Query 000560
Match_columns 1421
No_of_seqs 697 out of 5433
Neff 7.5
Searched_HMMs 46136
Date Mon Apr 1 19:19:06 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-271 2E-276 2574.1 141.3 1207 201-1421 122-1352(1381)
2 PLN03130 ABC transporter C fam 100.0 8E-207 2E-211 2089.2 168.5 1388 7-1421 29-1451(1622)
3 PLN03232 ABC transporter C fam 100.0 7E-203 2E-207 2053.6 167.8 1388 8-1421 30-1448(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 2E-200 5E-205 2032.1 169.0 1210 199-1421 199-1498(1522)
5 TIGR01271 CFTR_protein cystic 100.0 3E-195 7E-200 1974.7 148.7 1209 201-1421 3-1430(1490)
6 PTZ00243 ABC transporter; Prov 100.0 1E-185 2E-190 1880.4 148.1 1217 199-1421 57-1523(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 6E-137 1E-141 1292.9 110.9 1058 333-1421 90-1203(1228)
8 PTZ00265 multidrug resistance 100.0 4E-127 9E-132 1294.5 136.9 1138 266-1420 51-1440(1466)
9 KOG0058 Peptide exporter, ABC 100.0 3.8E-85 8.2E-90 784.3 58.3 540 876-1421 134-681 (716)
10 COG2274 SunT ABC-type bacterio 100.0 1.3E-78 2.9E-83 760.9 65.5 524 894-1421 157-686 (709)
11 COG1132 MdlB ABC-type multidru 100.0 9E-75 1.9E-79 733.5 64.8 519 897-1421 20-542 (567)
12 PRK11174 cysteine/glutathione 100.0 7.1E-74 1.5E-78 729.3 67.4 537 878-1421 11-562 (588)
13 TIGR00958 3a01208 Conjugate Tr 100.0 1E-73 2.2E-78 738.2 66.4 533 879-1421 151-692 (711)
14 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9E-73 2E-77 730.0 68.3 519 895-1421 140-663 (686)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-72 2.4E-77 732.5 66.8 540 877-1421 142-690 (710)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-72 2.8E-77 731.0 66.6 537 877-1421 144-687 (708)
17 PRK10790 putative multidrug tr 100.0 3.5E-72 7.5E-77 713.9 67.7 519 896-1421 28-553 (592)
18 TIGR03375 type_I_sec_LssB type 100.0 7.1E-72 1.5E-76 722.6 68.7 538 877-1421 135-678 (694)
19 TIGR02868 CydC thiol reductant 100.0 6.3E-72 1.4E-76 702.7 64.4 505 896-1403 18-529 (529)
20 PRK11176 lipid transporter ATP 100.0 4.8E-71 1E-75 702.9 66.6 482 935-1421 73-557 (582)
21 PRK11160 cysteine/glutathione 100.0 6.8E-71 1.5E-75 696.9 66.9 535 880-1421 7-552 (574)
22 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-70 5.3E-75 695.6 66.5 520 897-1421 20-546 (571)
23 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-69 2.5E-74 701.4 68.1 539 876-1421 126-670 (694)
24 TIGR02857 CydD thiol reductant 100.0 1.2E-69 2.7E-74 682.0 64.9 513 898-1415 10-529 (529)
25 COG4988 CydD ABC-type transpor 100.0 5.3E-69 1.2E-73 635.5 60.5 490 928-1421 41-533 (559)
26 COG4987 CydC ABC-type transpor 100.0 4.5E-69 9.8E-74 623.9 57.7 475 941-1421 72-551 (573)
27 KOG0055 Multidrug/pheromone ex 100.0 1.8E-70 4E-75 691.5 46.5 490 927-1421 71-566 (1228)
28 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-68 8.3E-73 675.9 68.2 525 893-1421 21-548 (588)
29 TIGR02204 MsbA_rel ABC transpo 100.0 2.9E-68 6.3E-73 676.9 67.0 540 878-1421 7-553 (576)
30 TIGR01192 chvA glucan exporter 100.0 9.4E-67 2E-71 660.0 68.3 535 880-1421 10-548 (585)
31 PRK10789 putative multidrug tr 100.0 2.5E-67 5.3E-72 664.5 62.8 486 931-1421 40-528 (569)
32 PRK11174 cysteine/glutathione 100.0 2.4E-66 5.2E-71 660.2 71.8 539 266-820 13-583 (588)
33 KOG0056 Heavy metal exporter H 100.0 4.3E-69 9.3E-74 606.4 34.6 473 940-1421 272-751 (790)
34 KOG0057 Mitochondrial Fe/S clu 100.0 1.1E-66 2.3E-71 604.3 54.1 488 927-1421 74-564 (591)
35 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-65 8.4E-70 642.1 65.3 513 897-1421 12-532 (544)
36 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-64 2.6E-69 637.6 62.6 513 898-1421 25-549 (555)
37 KOG0058 Peptide exporter, ABC 100.0 3.7E-64 8.1E-69 603.5 62.9 541 268-821 140-704 (716)
38 PTZ00265 multidrug resistance 100.0 5.2E-64 1.1E-68 680.3 64.9 487 929-1419 99-656 (1466)
39 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.1E-63 1.3E-67 641.4 71.4 534 267-816 146-707 (710)
40 COG1123 ATPase components of v 100.0 1.2E-65 2.6E-70 610.8 41.7 443 590-1421 5-509 (539)
41 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.7E-62 3.8E-67 634.3 73.2 537 265-819 126-683 (686)
42 TIGR03375 type_I_sec_LssB type 100.0 1.6E-62 3.4E-67 635.5 72.1 530 265-808 137-688 (694)
43 COG5265 ATM1 ABC-type transpor 100.0 1.7E-65 3.7E-70 575.7 37.5 470 948-1421 3-476 (497)
44 PRK10261 glutathione transport 100.0 3.7E-65 8.1E-70 648.0 45.4 463 589-1421 11-543 (623)
45 TIGR00958 3a01208 Conjugate Tr 100.0 2.4E-62 5.2E-67 632.4 71.9 525 270-808 156-702 (711)
46 PRK09700 D-allose transporter 100.0 1E-64 2.2E-69 633.5 44.9 430 590-1421 5-488 (510)
47 COG2274 SunT ABC-type bacterio 100.0 6.7E-62 1.5E-66 610.3 70.4 541 264-818 143-705 (709)
48 PRK13549 xylose transporter AT 100.0 1.3E-64 2.9E-69 631.3 45.6 430 590-1421 5-484 (506)
49 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-63 3E-68 676.1 55.8 243 1165-1421 716-983 (1394)
50 PRK15134 microcin C ABC transp 100.0 2.3E-64 4.9E-69 632.6 42.9 436 590-1421 5-505 (529)
51 TIGR02633 xylG D-xylose ABC tr 100.0 6.9E-64 1.5E-68 624.9 44.7 430 591-1421 2-482 (500)
52 TIGR02203 MsbA_lipidA lipid A 100.0 6.2E-61 1.3E-65 609.5 71.8 538 267-818 6-565 (571)
53 PRK10762 D-ribose transporter 100.0 8.7E-64 1.9E-68 623.3 44.5 423 590-1421 4-474 (501)
54 PRK11176 lipid transporter ATP 100.0 6.2E-61 1.3E-65 610.2 71.5 539 267-819 17-577 (582)
55 TIGR03269 met_CoM_red_A2 methy 100.0 8.6E-64 1.9E-68 626.6 43.0 209 1207-1421 279-507 (520)
56 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-63 4E-68 620.8 45.6 435 590-1421 11-482 (510)
57 PRK15064 ABC transporter ATP-b 100.0 4.6E-63 9.9E-68 621.0 48.7 190 1206-1421 318-514 (530)
58 TIGR01193 bacteriocin_ABC ABC- 100.0 1.1E-60 2.3E-65 619.7 71.7 531 268-817 149-705 (708)
59 PRK10790 putative multidrug tr 100.0 4.9E-60 1.1E-64 602.5 74.5 537 268-820 16-574 (592)
60 PRK11288 araG L-arabinose tran 100.0 7.2E-63 1.6E-67 615.1 45.7 425 590-1421 4-475 (501)
61 PRK10522 multidrug transporter 100.0 9.6E-61 2.1E-65 602.2 63.6 467 934-1421 55-528 (547)
62 PRK10982 galactose/methyl gala 100.0 1.1E-62 2.4E-67 612.3 45.1 422 594-1421 2-470 (491)
63 PRK10938 putative molybdenum t 100.0 5.7E-63 1.2E-67 615.2 41.9 436 590-1421 3-482 (490)
64 TIGR02204 MsbA_rel ABC transpo 100.0 9.3E-60 2E-64 599.0 71.2 540 266-817 9-571 (576)
65 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-59 2.6E-64 592.3 69.0 521 271-808 2-542 (544)
66 PRK11819 putative ABC transpor 100.0 2.8E-61 6E-66 606.7 51.5 471 589-1420 5-521 (556)
67 PRK10789 putative multidrug tr 100.0 3.2E-59 7E-64 590.6 70.5 524 285-820 5-549 (569)
68 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-61 6.1E-66 606.7 51.0 470 590-1420 4-519 (552)
69 PRK13657 cyclic beta-1,2-gluca 100.0 5.4E-59 1.2E-63 592.0 72.3 533 269-820 13-569 (588)
70 TIGR02868 CydC thiol reductant 100.0 2.4E-59 5.3E-64 588.7 67.9 498 269-780 7-529 (529)
71 TIGR01257 rim_protein retinal- 100.0 3.8E-59 8.2E-64 627.9 73.3 205 1205-1421 1935-2149(2272)
72 PRK11160 cysteine/glutathione 100.0 1.6E-58 3.5E-63 584.3 72.0 537 269-818 10-571 (574)
73 TIGR01846 type_I_sec_HlyB type 100.0 3E-58 6.5E-63 595.1 72.1 540 266-819 130-690 (694)
74 PRK10636 putative ABC transpor 100.0 4.7E-60 1E-64 601.5 50.1 190 1207-1421 312-506 (638)
75 TIGR01192 chvA glucan exporter 100.0 3.4E-57 7.4E-62 572.9 72.7 532 269-819 13-568 (585)
76 PLN03232 ABC transporter C fam 100.0 1.7E-58 3.8E-63 632.9 65.0 451 952-1421 366-818 (1495)
77 TIGR02857 CydD thiol reductant 100.0 1.4E-57 3.1E-62 572.6 67.2 506 274-792 2-529 (529)
78 PLN03130 ABC transporter C fam 100.0 3.4E-58 7.5E-63 629.2 65.3 450 952-1421 366-818 (1622)
79 COG1132 MdlB ABC-type multidru 100.0 7E-57 1.5E-61 570.3 70.7 529 273-820 13-563 (567)
80 PRK11147 ABC transporter ATPas 100.0 4.9E-59 1.1E-63 593.9 49.8 190 1207-1421 319-517 (635)
81 COG4172 ABC-type uncharacteriz 100.0 1E-59 2.2E-64 524.3 36.4 438 589-1421 5-506 (534)
82 COG4988 CydD ABC-type transpor 100.0 4.4E-56 9.5E-61 525.9 65.5 523 279-821 4-555 (559)
83 PLN03073 ABC transporter F fam 100.0 2.2E-57 4.8E-62 577.4 51.4 191 1206-1421 507-703 (718)
84 PLN03140 ABC transporter G fam 100.0 1.6E-56 3.5E-61 603.9 57.5 205 1207-1421 867-1100(1470)
85 COG4618 ArpD ABC-type protease 100.0 2.9E-56 6.4E-61 511.9 49.0 475 936-1420 72-549 (580)
86 COG0488 Uup ATPase components 100.0 3.9E-57 8.6E-62 550.7 44.2 470 590-1417 3-511 (530)
87 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-54 5E-59 593.1 70.8 466 344-820 1031-1519(1522)
88 TIGR00954 3a01203 Peroxysomal 100.0 2.5E-55 5.4E-60 560.2 57.1 509 892-1417 97-653 (659)
89 PRK13409 putative ATPase RIL; 100.0 1.3E-56 2.9E-61 561.5 39.5 184 1207-1417 340-529 (590)
90 KOG0057 Mitochondrial Fe/S clu 100.0 1.7E-53 3.7E-58 494.4 57.6 514 289-817 44-582 (591)
91 PTZ00243 ABC transporter; Prov 100.0 2.5E-52 5.5E-57 571.0 70.1 460 352-820 1032-1545(1560)
92 COG4987 CydC ABC-type transpor 100.0 7E-52 1.5E-56 481.0 60.2 459 344-817 84-569 (573)
93 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.4E-52 1.6E-56 521.6 64.0 504 269-800 11-551 (555)
94 COG1129 MglA ABC-type sugar tr 100.0 2.7E-53 5.9E-58 502.4 42.0 431 589-1421 7-480 (500)
95 PRK10522 multidrug transporter 100.0 2.5E-50 5.5E-55 507.7 64.0 500 265-800 3-530 (547)
96 COG4618 ArpD ABC-type protease 100.0 9.3E-51 2E-55 466.6 53.7 525 263-808 11-560 (580)
97 TIGR01271 CFTR_protein cystic 100.0 7.2E-50 1.6E-54 547.1 72.2 465 345-822 952-1453(1490)
98 KOG0054 Multidrug resistance-a 100.0 2.2E-50 4.7E-55 522.5 60.6 452 951-1421 266-721 (1381)
99 KOG0056 Heavy metal exporter H 100.0 5.7E-52 1.2E-56 468.1 39.9 521 285-819 225-772 (790)
100 COG3845 ABC-type uncharacteriz 100.0 1.1E-50 2.3E-55 468.8 38.9 435 589-1421 3-482 (501)
101 TIGR00954 3a01203 Peroxysomal 100.0 6.8E-48 1.5E-52 491.9 61.1 501 276-794 97-653 (659)
102 cd03289 ABCC_CFTR2 The CFTR su 100.0 3E-50 6.4E-55 460.0 25.3 215 1206-1421 1-215 (275)
103 PRK14257 phosphate ABC transpo 100.0 1.6E-47 3.4E-52 448.6 24.3 244 1171-1421 35-303 (329)
104 COG5265 ATM1 ABC-type transpor 100.0 3.7E-45 8.1E-50 411.8 39.1 447 357-816 21-493 (497)
105 KOG0927 Predicted transporter 100.0 2.8E-46 6.1E-51 432.0 26.7 190 1207-1420 389-584 (614)
106 PRK14257 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 413.6 24.0 261 525-809 23-314 (329)
107 KOG0062 ATPase component of AB 100.0 2.3E-42 5.1E-47 397.7 29.2 192 1204-1421 359-558 (582)
108 COG1135 AbcC ABC-type metal io 100.0 2.6E-43 5.6E-48 386.0 19.4 203 1208-1421 2-221 (339)
109 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-42 3.5E-47 387.0 25.8 216 1206-1421 1-216 (221)
110 COG1126 GlnQ ABC-type polar am 100.0 5.4E-43 1.2E-47 365.8 19.7 202 1207-1421 2-215 (240)
111 cd03288 ABCC_SUR2 The SUR doma 100.0 3.6E-42 7.9E-47 392.6 26.4 218 1204-1421 16-233 (257)
112 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-41 3.8E-46 382.8 24.8 214 1208-1421 1-215 (237)
113 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.1E-41 1.1E-45 371.0 24.6 202 1202-1421 1-202 (207)
114 COG1117 PstB ABC-type phosphat 100.0 1E-41 2.2E-46 353.9 16.7 207 1206-1421 6-227 (253)
115 COG1126 GlnQ ABC-type polar am 100.0 3.5E-41 7.6E-46 352.2 20.5 203 590-812 2-229 (240)
116 cd03245 ABCC_bacteriocin_expor 100.0 1E-40 2.3E-45 372.2 25.4 216 1206-1421 1-217 (220)
117 cd03254 ABCC_Glucan_exporter_l 100.0 1.2E-40 2.6E-45 374.1 24.1 215 1206-1421 1-216 (229)
118 cd03251 ABCC_MsbA MsbA is an e 100.0 1.8E-40 4E-45 373.8 25.3 214 1208-1421 1-215 (234)
119 KOG0065 Pleiotropic drug resis 100.0 2.8E-39 6.1E-44 408.0 38.0 189 1220-1418 802-1007(1391)
120 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-40 5E-45 370.9 24.0 217 1204-1420 8-226 (226)
121 cd03253 ABCC_ATM1_transporter 100.0 4.8E-40 1E-44 370.9 25.0 213 1208-1421 1-214 (236)
122 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.9E-40 8.5E-45 372.1 24.3 214 1208-1421 1-216 (238)
123 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.5E-40 5.4E-45 363.0 21.4 197 1207-1419 4-216 (254)
124 COG1136 SalX ABC-type antimicr 100.0 7E-40 1.5E-44 354.8 23.3 202 1208-1420 2-220 (226)
125 cd03250 ABCC_MRP_domain1 Domai 100.0 7.4E-40 1.6E-44 360.9 24.0 199 1208-1419 1-204 (204)
126 TIGR00960 3a0501s02 Type II (G 100.0 3.8E-40 8.1E-45 366.6 21.4 202 1208-1420 2-216 (216)
127 COG1120 FepC ABC-type cobalami 100.0 3.3E-40 7.1E-45 364.2 20.6 202 1207-1421 2-218 (258)
128 COG1125 OpuBA ABC-type proline 100.0 1.9E-40 4.1E-45 352.4 17.9 201 1208-1421 2-215 (309)
129 COG4178 ABC-type uncharacteriz 100.0 8.1E-37 1.7E-41 368.8 49.7 467 927-1417 86-588 (604)
130 cd03260 ABC_PstB_phosphate_tra 100.0 1.1E-39 2.3E-44 365.8 21.6 203 1208-1421 1-219 (227)
131 TIGR02314 ABC_MetN D-methionin 100.0 9.1E-40 2E-44 383.5 21.9 203 1208-1421 2-220 (343)
132 COG2884 FtsE Predicted ATPase 100.0 6E-40 1.3E-44 335.0 17.4 202 1208-1421 2-216 (223)
133 COG1124 DppF ABC-type dipeptid 100.0 7.9E-40 1.7E-44 349.6 18.6 204 1207-1421 3-221 (252)
134 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-39 3.5E-44 362.1 20.8 202 1208-1420 1-218 (218)
135 PRK13631 cbiO cobalt transport 100.0 2.1E-39 4.7E-44 378.9 22.7 207 1205-1421 19-255 (320)
136 cd03226 ABC_cobalt_CbiO_domain 100.0 2.3E-39 5E-44 357.3 21.5 198 1209-1421 1-205 (205)
137 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-39 4.8E-44 365.1 21.2 201 1208-1421 1-216 (235)
138 COG1122 CbiO ABC-type cobalt t 100.0 2E-39 4.3E-44 358.8 20.2 203 1207-1421 3-218 (235)
139 COG4615 PvdE ABC-type sideroph 100.0 2.7E-36 5.8E-41 335.9 44.6 468 928-1421 49-527 (546)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 6.2E-39 1.3E-43 358.2 23.4 203 1208-1421 2-220 (221)
141 cd03290 ABCC_SUR1_N The SUR do 100.0 8.1E-39 1.8E-43 356.4 23.9 211 1208-1419 1-218 (218)
142 PRK13650 cbiO cobalt transport 100.0 4.1E-39 9E-44 371.3 22.2 204 1207-1421 4-219 (279)
143 cd03225 ABC_cobalt_CbiO_domain 100.0 3.3E-39 7.2E-44 357.8 20.3 200 1209-1419 1-211 (211)
144 cd03292 ABC_FtsE_transporter F 100.0 4.6E-39 1E-43 357.4 21.2 201 1208-1420 1-214 (214)
145 PRK11629 lolD lipoprotein tran 100.0 5.5E-39 1.2E-43 361.4 22.0 204 1207-1421 5-224 (233)
146 cd03259 ABC_Carb_Solutes_like 100.0 3.8E-39 8.3E-44 357.8 20.4 199 1208-1421 1-210 (213)
147 PRK14269 phosphate ABC transpo 100.0 5.9E-39 1.3E-43 364.0 22.1 206 1207-1421 2-220 (246)
148 TIGR02673 FtsE cell division A 100.0 4.7E-39 1E-43 357.4 20.2 200 1208-1419 2-214 (214)
149 COG3638 ABC-type phosphate/pho 100.0 4.3E-39 9.4E-44 340.8 18.7 203 1207-1421 3-227 (258)
150 cd03247 ABCC_cytochrome_bd The 100.0 6.6E-39 1.4E-43 345.5 20.6 175 1208-1421 1-175 (178)
151 COG1125 OpuBA ABC-type proline 100.0 4E-39 8.7E-44 342.3 18.5 210 591-818 2-235 (309)
152 PRK13647 cbiO cobalt transport 100.0 6.7E-39 1.4E-43 368.6 21.8 203 1207-1421 4-217 (274)
153 COG1116 TauB ABC-type nitrate/ 100.0 5.1E-39 1.1E-43 347.3 19.4 194 1207-1418 3-207 (248)
154 cd03246 ABCC_Protease_Secretio 100.0 1.1E-38 2.4E-43 342.1 21.7 172 1208-1420 1-173 (173)
155 cd03263 ABC_subfamily_A The AB 100.0 7.1E-39 1.5E-43 357.5 21.0 202 1208-1421 1-211 (220)
156 cd03266 ABC_NatA_sodium_export 100.0 8.7E-39 1.9E-43 356.2 21.3 202 1208-1421 2-215 (218)
157 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.2E-38 4.9E-43 362.2 24.9 220 590-819 2-235 (275)
158 PRK14250 phosphate ABC transpo 100.0 1.7E-38 3.7E-43 359.1 22.7 202 1207-1421 3-211 (241)
159 PRK13635 cbiO cobalt transport 100.0 1.4E-38 3E-43 366.7 22.4 204 1207-1421 5-219 (279)
160 COG1116 TauB ABC-type nitrate/ 100.0 1E-38 2.2E-43 345.0 19.7 188 590-797 3-211 (248)
161 PRK13637 cbiO cobalt transport 100.0 1.3E-38 2.9E-43 368.4 21.9 203 1208-1421 3-224 (287)
162 cd03264 ABC_drug_resistance_li 100.0 1.2E-38 2.6E-43 353.3 20.5 199 1208-1421 1-208 (211)
163 cd03256 ABC_PhnC_transporter A 100.0 1.4E-38 3.1E-43 360.1 21.4 202 1208-1421 1-224 (241)
164 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-38 3.6E-43 351.4 21.3 199 1208-1421 1-205 (208)
165 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-38 3.7E-43 337.2 20.2 204 1205-1421 6-225 (263)
166 PRK11153 metN DL-methionine tr 100.0 1.3E-38 2.9E-43 376.4 21.1 203 1208-1421 2-220 (343)
167 TIGR02315 ABC_phnC phosphonate 100.0 2.2E-38 4.8E-43 359.0 21.8 202 1208-1421 2-225 (243)
168 PRK10744 pstB phosphate transp 100.0 3.2E-38 7E-43 360.9 23.2 208 1205-1421 11-234 (260)
169 PRK10908 cell division protein 100.0 5E-38 1.1E-42 351.0 24.2 202 1208-1421 2-216 (222)
170 COG1135 AbcC ABC-type metal io 100.0 1.9E-38 4.2E-43 347.8 20.0 214 591-816 2-239 (339)
171 PRK14242 phosphate transporter 100.0 2.9E-38 6.3E-43 360.1 22.0 206 1207-1421 6-227 (253)
172 PRK14273 phosphate ABC transpo 100.0 2.8E-38 6.2E-43 360.3 21.6 206 1207-1421 7-228 (254)
173 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-38 5E-43 357.2 20.6 201 1208-1421 1-222 (236)
174 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.2E-38 4.8E-43 353.4 20.2 198 1208-1421 1-213 (220)
175 COG1120 FepC ABC-type cobalami 100.0 2.9E-38 6.2E-43 348.8 20.7 199 590-808 2-228 (258)
176 cd03262 ABC_HisP_GlnQ_permease 100.0 2.7E-38 5.9E-43 351.0 20.6 200 1208-1420 1-213 (213)
177 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.3E-38 1.2E-42 344.6 22.5 198 589-808 3-227 (254)
178 PRK13632 cbiO cobalt transport 100.0 5.1E-38 1.1E-42 361.2 23.4 204 1207-1421 7-221 (271)
179 cd03258 ABC_MetN_methionine_tr 100.0 2.8E-38 6E-43 355.8 20.8 203 1208-1421 2-220 (233)
180 PRK10584 putative ABC transpor 100.0 5E-38 1.1E-42 352.6 22.8 204 1207-1421 6-225 (228)
181 cd03296 ABC_CysA_sulfate_impor 100.0 4.1E-38 8.9E-43 355.7 22.1 199 1208-1421 3-216 (239)
182 cd03301 ABC_MalK_N The N-termi 100.0 2.6E-38 5.7E-43 351.1 20.1 199 1208-1421 1-210 (213)
183 cd03235 ABC_Metallic_Cations A 100.0 2.5E-38 5.4E-43 351.2 19.7 194 1209-1420 1-210 (213)
184 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.7E-37 3.6E-42 356.3 26.9 200 1205-1421 37-237 (282)
185 TIGR00972 3a0107s01c2 phosphat 100.0 3.8E-38 8.2E-43 357.8 21.3 205 1208-1421 2-222 (247)
186 PRK13646 cbiO cobalt transport 100.0 3.9E-38 8.4E-43 364.5 21.7 204 1208-1421 3-225 (286)
187 cd03224 ABC_TM1139_LivF_branch 100.0 3E-38 6.4E-43 353.0 19.9 202 1208-1421 1-211 (222)
188 cd03298 ABC_ThiQ_thiamine_tran 100.0 6E-38 1.3E-42 347.7 22.2 197 1208-1421 1-208 (211)
189 COG3839 MalK ABC-type sugar tr 100.0 4.1E-38 8.9E-43 360.3 21.3 200 1207-1421 3-213 (338)
190 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3E-38 6.5E-43 357.4 19.9 204 1208-1421 1-215 (242)
191 PRK13643 cbiO cobalt transport 100.0 5.1E-38 1.1E-42 363.7 21.8 203 1208-1421 2-223 (288)
192 PRK11650 ugpC glycerol-3-phosp 100.0 6.8E-38 1.5E-42 370.8 23.0 201 1207-1421 3-214 (356)
193 PRK14235 phosphate transporter 100.0 7.5E-38 1.6E-42 359.0 22.6 209 1204-1421 16-241 (267)
194 cd03265 ABC_DrrA DrrA is the A 100.0 7.2E-38 1.6E-42 349.3 21.7 200 1208-1421 1-211 (220)
195 PRK13636 cbiO cobalt transport 100.0 7E-38 1.5E-42 361.9 22.2 203 1207-1421 5-221 (283)
196 PRK11247 ssuB aliphatic sulfon 100.0 1E-37 2.2E-42 354.6 23.1 198 1206-1421 11-213 (257)
197 PRK13640 cbiO cobalt transport 100.0 1.3E-37 2.7E-42 359.5 23.9 205 1206-1421 4-222 (282)
198 PRK14247 phosphate ABC transpo 100.0 8E-38 1.7E-42 355.8 21.6 206 1207-1421 3-224 (250)
199 PRK14267 phosphate ABC transpo 100.0 6.3E-38 1.4E-42 357.4 20.7 206 1207-1421 4-227 (253)
200 PRK11432 fbpC ferric transport 100.0 8.4E-38 1.8E-42 368.9 22.1 201 1206-1421 5-216 (351)
201 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.6E-38 1.9E-42 352.4 21.2 200 1208-1421 2-211 (236)
202 COG3840 ThiQ ABC-type thiamine 100.0 7E-38 1.5E-42 316.8 18.0 197 1208-1421 2-209 (231)
203 PRK14259 phosphate ABC transpo 100.0 1.7E-37 3.8E-42 356.1 23.7 205 1204-1417 10-228 (269)
204 PRK13644 cbiO cobalt transport 100.0 1.4E-37 3E-42 357.7 22.8 202 1208-1421 2-214 (274)
205 PRK10619 histidine/lysine/argi 100.0 1.3E-37 2.8E-42 355.4 22.1 205 1205-1421 3-231 (257)
206 cd03269 ABC_putative_ATPase Th 100.0 7.2E-38 1.6E-42 346.8 19.3 197 1208-1421 1-207 (210)
207 PRK10575 iron-hydroxamate tran 100.0 1.1E-37 2.4E-42 357.4 21.5 202 1207-1421 11-227 (265)
208 cd03257 ABC_NikE_OppD_transpor 100.0 2E-37 4.3E-42 347.8 23.0 204 1208-1421 2-225 (228)
209 PRK14237 phosphate transporter 100.0 1.6E-37 3.5E-42 356.2 22.7 207 1206-1421 19-241 (267)
210 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-37 2.9E-42 352.3 21.8 201 1208-1421 3-221 (242)
211 cd03218 ABC_YhbG The ABC trans 100.0 1E-37 2.3E-42 351.0 20.6 201 1208-1421 1-212 (232)
212 cd03291 ABCC_CFTR1 The CFTR su 100.0 9E-37 1.9E-41 350.3 28.5 212 586-808 35-247 (282)
213 COG1127 Ttg2A ABC-type transpo 100.0 2.7E-37 5.8E-42 328.1 22.2 205 588-814 6-240 (263)
214 PRK13652 cbiO cobalt transport 100.0 1.7E-37 3.7E-42 357.7 22.5 202 1208-1421 4-217 (277)
215 PRK13634 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 360.8 21.4 204 1208-1421 3-225 (290)
216 PRK13642 cbiO cobalt transport 100.0 2.1E-37 4.6E-42 357.0 23.2 204 1207-1421 4-219 (277)
217 PRK11231 fecE iron-dicitrate t 100.0 1.4E-37 3.1E-42 354.7 21.5 201 1208-1421 3-217 (255)
218 PRK14251 phosphate ABC transpo 100.0 9.7E-38 2.1E-42 355.4 20.1 206 1207-1421 4-225 (251)
219 PRK13633 cobalt transporter AT 100.0 1.9E-37 4.1E-42 357.9 22.8 204 1207-1421 4-223 (280)
220 PRK13651 cobalt transporter AT 100.0 1.6E-37 3.4E-42 361.2 22.1 204 1207-1421 2-244 (305)
221 PRK09536 btuD corrinoid ABC tr 100.0 1.6E-37 3.4E-42 370.6 22.7 202 1207-1421 3-218 (402)
222 PRK14240 phosphate transporter 100.0 2.3E-37 5E-42 352.1 22.6 207 1206-1421 2-224 (250)
223 PRK13648 cbiO cobalt transport 100.0 1.6E-37 3.4E-42 356.8 21.5 204 1207-1421 7-221 (269)
224 TIGR01186 proV glycine betaine 100.0 8.5E-38 1.8E-42 368.6 19.5 189 1222-1421 6-209 (363)
225 TIGR03005 ectoine_ehuA ectoine 100.0 1.8E-37 4E-42 353.2 21.4 201 1208-1421 1-226 (252)
226 PRK09493 glnQ glutamine ABC tr 100.0 2E-37 4.3E-42 350.4 21.6 201 1208-1421 2-215 (240)
227 PRK13537 nodulation ABC transp 100.0 1.4E-37 3.1E-42 362.3 20.8 202 1206-1421 6-217 (306)
228 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.8E-38 2.1E-42 358.2 19.1 200 1209-1421 26-240 (269)
229 PRK14245 phosphate ABC transpo 100.0 1.6E-37 3.4E-42 353.4 20.6 206 1207-1421 3-224 (250)
230 PRK14244 phosphate ABC transpo 100.0 9.4E-38 2E-42 355.4 18.8 205 1208-1421 6-227 (251)
231 TIGR01277 thiQ thiamine ABC tr 100.0 2.2E-37 4.8E-42 343.5 21.3 197 1208-1421 1-208 (213)
232 PRK14249 phosphate ABC transpo 100.0 3E-37 6.4E-42 351.3 22.8 206 1207-1421 4-225 (251)
233 PRK14268 phosphate ABC transpo 100.0 1.7E-37 3.7E-42 354.5 20.8 206 1207-1421 12-232 (258)
234 PRK14239 phosphate transporter 100.0 1.9E-37 4E-42 353.3 21.1 206 1207-1421 5-226 (252)
235 cd03228 ABCC_MRP_Like The MRP 100.0 2.6E-37 5.7E-42 330.7 20.9 171 1208-1419 1-171 (171)
236 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-37 3.4E-42 367.3 21.1 200 1207-1421 4-214 (353)
237 PRK11124 artP arginine transpo 100.0 2.2E-37 4.9E-42 350.4 21.5 201 1208-1421 3-220 (242)
238 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-37 3.9E-42 346.0 20.4 203 1208-1421 2-220 (220)
239 PRK14256 phosphate ABC transpo 100.0 3.1E-37 6.7E-42 351.4 22.5 208 1205-1421 2-226 (252)
240 COG1118 CysA ABC-type sulfate/ 100.0 8.6E-38 1.9E-42 341.5 17.0 205 591-815 3-234 (345)
241 PRK10247 putative ABC transpor 100.0 3E-37 6.6E-42 345.2 22.0 202 1207-1420 7-217 (225)
242 PRK14236 phosphate transporter 100.0 3.3E-37 7.2E-42 354.6 22.9 208 1205-1421 23-246 (272)
243 PRK10851 sulfate/thiosulfate t 100.0 2.8E-37 6.1E-42 365.1 22.7 200 1207-1421 2-216 (353)
244 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-37 2.5E-42 350.1 18.4 202 1208-1421 1-211 (230)
245 PRK14248 phosphate ABC transpo 100.0 2.6E-37 5.6E-42 355.0 21.6 206 1207-1421 21-242 (268)
246 PRK14262 phosphate ABC transpo 100.0 1.9E-37 4.2E-42 352.7 20.3 206 1207-1421 3-224 (250)
247 COG3839 MalK ABC-type sugar tr 100.0 2E-37 4.3E-42 354.7 20.3 205 590-814 3-229 (338)
248 PRK14266 phosphate ABC transpo 100.0 3.2E-37 6.9E-42 350.9 21.5 206 1207-1421 3-224 (250)
249 PRK14274 phosphate ABC transpo 100.0 4.3E-37 9.3E-42 351.5 22.4 206 1207-1421 12-233 (259)
250 PRK15079 oligopeptide ABC tran 100.0 3.5E-37 7.6E-42 361.6 22.2 205 1207-1421 8-241 (331)
251 PRK14270 phosphate ABC transpo 100.0 4.3E-37 9.4E-42 350.0 22.3 206 1207-1421 4-225 (251)
252 PRK14252 phosphate ABC transpo 100.0 3.5E-37 7.7E-42 353.3 21.6 211 1202-1421 11-239 (265)
253 PRK10253 iron-enterobactin tra 100.0 3.5E-37 7.5E-42 353.2 21.5 203 1206-1421 6-223 (265)
254 PRK14254 phosphate ABC transpo 100.0 6.1E-37 1.3E-41 354.0 23.6 207 1206-1421 38-259 (285)
255 PRK11831 putative ABC transpor 100.0 3.2E-37 6.9E-42 354.1 21.1 202 1207-1421 7-223 (269)
256 PRK13649 cbiO cobalt transport 100.0 2.9E-37 6.4E-42 356.8 20.8 204 1208-1421 3-224 (280)
257 PRK13645 cbiO cobalt transport 100.0 3.5E-37 7.5E-42 357.5 21.5 206 1205-1421 4-230 (289)
258 PRK11000 maltose/maltodextrin 100.0 3.2E-37 7E-42 367.5 21.7 200 1207-1421 3-213 (369)
259 PRK13548 hmuV hemin importer A 100.0 7.2E-37 1.6E-41 349.0 23.7 201 1208-1421 3-220 (258)
260 PRK14238 phosphate transporter 100.0 5.7E-37 1.2E-41 352.3 23.0 208 1205-1421 22-245 (271)
261 cd03300 ABC_PotA_N PotA is an 100.0 2.3E-37 4.9E-42 348.0 19.2 199 1208-1421 1-210 (232)
262 PRK11264 putative amino-acid A 100.0 4.3E-37 9.2E-42 349.9 21.4 202 1207-1421 3-223 (250)
263 PRK11308 dppF dipeptide transp 100.0 4.5E-37 9.7E-42 360.4 21.9 205 1207-1421 5-234 (327)
264 COG1117 PstB ABC-type phosphat 100.0 1.8E-37 3.9E-42 322.4 16.3 205 589-810 6-239 (253)
265 PRK11614 livF leucine/isoleuci 100.0 6.5E-37 1.4E-41 345.6 22.3 202 1207-1421 5-216 (237)
266 cd03250 ABCC_MRP_domain1 Domai 100.0 8.3E-37 1.8E-41 336.7 22.7 200 591-796 1-204 (204)
267 PRK13641 cbiO cobalt transport 100.0 5.2E-37 1.1E-41 355.4 22.0 204 1207-1421 2-224 (287)
268 cd03230 ABC_DR_subfamily_A Thi 100.0 5.3E-37 1.2E-41 329.0 20.5 170 1208-1420 1-173 (173)
269 COG1245 Predicted ATPase, RNas 100.0 1.8E-36 3.9E-41 343.1 25.6 162 1231-1417 363-531 (591)
270 PRK14260 phosphate ABC transpo 100.0 4.9E-37 1.1E-41 350.9 21.3 207 1206-1421 6-233 (259)
271 TIGR03258 PhnT 2-aminoethylpho 100.0 3.7E-37 8E-42 364.5 20.9 202 1205-1421 3-218 (362)
272 COG3842 PotA ABC-type spermidi 100.0 2.7E-37 5.9E-42 355.4 19.2 209 589-817 4-235 (352)
273 cd03229 ABC_Class3 This class 100.0 6.3E-37 1.4E-41 330.0 20.9 172 1208-1419 1-178 (178)
274 PRK09452 potA putrescine/sperm 100.0 6.4E-37 1.4E-41 363.7 23.0 201 1206-1421 13-224 (375)
275 PRK14261 phosphate ABC transpo 100.0 5.8E-37 1.3E-41 349.3 21.6 206 1207-1421 6-227 (253)
276 PRK11300 livG leucine/isoleuci 100.0 7.6E-37 1.6E-41 348.9 22.4 202 1207-1421 5-233 (255)
277 PRK10895 lipopolysaccharide AB 100.0 9.5E-37 2.1E-41 345.1 22.8 202 1207-1421 3-216 (241)
278 TIGR00968 3a0106s01 sulfate AB 100.0 6.9E-37 1.5E-41 345.0 21.6 199 1208-1421 1-210 (237)
279 TIGR02769 nickel_nikE nickel i 100.0 7.8E-37 1.7E-41 350.3 22.1 204 1208-1421 3-230 (265)
280 PRK13638 cbiO cobalt transport 100.0 6.2E-37 1.3E-41 352.3 21.1 201 1208-1421 2-215 (271)
281 TIGR03522 GldA_ABC_ATP gliding 100.0 6.1E-37 1.3E-41 357.0 21.2 200 1208-1421 3-211 (301)
282 PRK14253 phosphate ABC transpo 100.0 9.2E-37 2E-41 346.9 22.0 206 1207-1421 3-223 (249)
283 TIGR03873 F420-0_ABC_ATP propo 100.0 8E-37 1.7E-41 348.7 21.6 201 1208-1421 2-216 (256)
284 PRK14243 phosphate transporter 100.0 1.1E-36 2.3E-41 348.9 22.6 206 1207-1421 10-238 (264)
285 PRK10771 thiQ thiamine transpo 100.0 1.6E-36 3.5E-41 341.2 23.6 197 1208-1421 2-209 (232)
286 cd03252 ABCC_Hemolysin The ABC 100.0 2.3E-36 4.9E-41 341.2 24.9 210 591-808 1-225 (237)
287 TIGR01288 nodI ATP-binding ABC 100.0 7.9E-37 1.7E-41 356.6 21.8 201 1207-1421 4-214 (303)
288 PRK14271 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 349.9 23.0 206 1207-1421 21-241 (276)
289 PRK14264 phosphate ABC transpo 100.0 1.2E-36 2.5E-41 355.0 22.8 208 1205-1421 43-279 (305)
290 PRK13639 cbiO cobalt transport 100.0 9.9E-37 2.1E-41 351.0 21.8 202 1208-1421 2-216 (275)
291 PRK11248 tauB taurine transpor 100.0 8.8E-37 1.9E-41 347.4 21.0 196 1208-1421 2-210 (255)
292 PRK14265 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 348.8 23.3 208 1205-1421 18-248 (274)
293 PRK10070 glycine betaine trans 100.0 8.1E-37 1.8E-41 364.3 21.5 188 1223-1421 42-244 (400)
294 PRK13536 nodulation factor exp 100.0 7.5E-37 1.6E-41 359.7 20.7 201 1207-1421 41-251 (340)
295 PRK14241 phosphate transporter 100.0 1.1E-36 2.4E-41 347.9 21.3 206 1207-1421 4-232 (258)
296 cd03299 ABC_ModC_like Archeal 100.0 1.1E-36 2.3E-41 343.1 20.7 198 1208-1421 1-209 (235)
297 PRK14255 phosphate ABC transpo 100.0 1.2E-36 2.6E-41 346.7 21.1 206 1207-1421 5-226 (252)
298 COG1131 CcmA ABC-type multidru 100.0 7.7E-37 1.7E-41 352.7 19.5 202 1207-1421 4-216 (293)
299 TIGR01978 sufC FeS assembly AT 100.0 1E-36 2.2E-41 345.4 20.2 203 1208-1421 1-224 (243)
300 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-36 2.3E-41 329.4 19.3 172 1207-1420 4-182 (182)
301 PRK14263 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 346.4 21.8 206 1207-1421 8-235 (261)
302 PRK14258 phosphate ABC transpo 100.0 1.6E-36 3.6E-41 346.9 21.5 207 1206-1421 6-235 (261)
303 COG3842 PotA ABC-type spermidi 100.0 9.9E-37 2.1E-41 350.8 19.5 201 1206-1421 4-216 (352)
304 PRK11022 dppD dipeptide transp 100.0 1.6E-36 3.5E-41 355.9 21.7 207 1207-1421 3-233 (326)
305 PRK15112 antimicrobial peptide 100.0 1.6E-36 3.4E-41 348.0 20.9 204 1207-1421 4-229 (267)
306 PRK14275 phosphate ABC transpo 100.0 1.7E-36 3.8E-41 350.6 21.2 207 1206-1421 38-260 (286)
307 PRK14272 phosphate ABC transpo 100.0 1.9E-36 4.2E-41 345.0 20.8 206 1207-1421 4-226 (252)
308 PRK13547 hmuV hemin importer A 100.0 3.2E-36 7E-41 345.1 22.7 201 1208-1421 2-234 (272)
309 TIGR03608 L_ocin_972_ABC putat 100.0 1.3E-36 2.8E-41 335.8 18.7 193 1210-1415 1-206 (206)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 2.8E-36 6.1E-41 320.9 20.3 164 1208-1419 1-164 (166)
311 PRK11607 potG putrescine trans 100.0 2.4E-36 5.2E-41 359.5 21.7 201 1206-1421 18-229 (377)
312 cd03288 ABCC_SUR2 The SUR doma 100.0 9E-36 1.9E-40 340.0 25.4 213 589-809 18-244 (257)
313 COG1136 SalX ABC-type antimicr 100.0 5E-36 1.1E-40 324.8 22.0 194 591-799 2-222 (226)
314 cd03254 ABCC_Glucan_exporter_l 100.0 6.1E-36 1.3E-40 335.9 23.6 210 590-808 2-226 (229)
315 TIGR01188 drrA daunorubicin re 100.0 1.8E-36 3.9E-41 353.4 20.0 192 1216-1421 2-203 (302)
316 PRK09473 oppD oligopeptide tra 100.0 2.7E-36 5.8E-41 354.3 21.1 207 1207-1421 12-241 (330)
317 KOG0066 eIF2-interacting prote 100.0 2.5E-36 5.5E-41 337.0 19.4 186 1207-1417 586-776 (807)
318 COG3840 ThiQ ABC-type thiamine 100.0 2.3E-36 4.9E-41 305.9 17.2 197 591-809 2-220 (231)
319 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.4E-36 2E-40 336.4 24.3 211 591-808 1-226 (238)
320 TIGR03740 galliderm_ABC gallid 100.0 5.6E-36 1.2E-40 334.8 21.6 197 1208-1421 1-203 (223)
321 cd03234 ABCG_White The White s 100.0 2.3E-36 4.9E-41 338.6 18.3 200 1208-1421 4-223 (226)
322 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-35 2.5E-40 334.8 24.1 210 591-808 1-225 (234)
323 cd03233 ABC_PDR_domain1 The pl 100.0 4.6E-36 9.9E-41 329.8 20.1 187 1207-1421 3-199 (202)
324 cd03253 ABCC_ATM1_transporter 100.0 1.6E-35 3.5E-40 334.0 24.8 209 591-808 1-224 (236)
325 PRK11650 ugpC glycerol-3-phosp 100.0 8.7E-36 1.9E-40 352.8 23.6 203 590-811 3-227 (356)
326 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-35 3.2E-40 331.0 24.1 205 590-802 2-220 (221)
327 PRK14246 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 341.1 21.1 207 1206-1421 9-231 (257)
328 COG1122 CbiO ABC-type cobalt t 100.0 5E-36 1.1E-40 331.7 20.0 200 590-808 3-228 (235)
329 PRK09984 phosphonate/organopho 100.0 6.9E-36 1.5E-40 342.2 21.7 202 1207-1421 4-232 (262)
330 PRK10418 nikD nickel transport 100.0 6.2E-36 1.4E-40 340.8 21.0 202 1207-1421 4-220 (254)
331 cd03297 ABC_ModC_molybdenum_tr 100.0 5.9E-36 1.3E-40 332.4 20.3 197 1208-1421 2-211 (214)
332 PRK15093 antimicrobial peptide 100.0 6.2E-36 1.4E-40 352.2 21.6 207 1207-1421 3-238 (330)
333 PRK11701 phnK phosphonate C-P 100.0 7.3E-36 1.6E-40 341.2 21.4 203 1207-1421 6-231 (258)
334 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-36 1E-40 327.5 18.7 179 1207-1421 3-191 (194)
335 TIGR01186 proV glycine betaine 100.0 5.5E-36 1.2E-40 353.3 19.7 196 611-815 6-226 (363)
336 TIGR03415 ABC_choXWV_ATP choli 100.0 7.4E-36 1.6E-40 353.5 20.7 188 1223-1421 38-244 (382)
337 PRK11144 modC molybdate transp 100.0 1.1E-35 2.4E-40 352.9 22.1 198 1208-1421 2-208 (352)
338 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.1E-35 2.4E-40 326.3 20.4 177 1208-1421 1-184 (200)
339 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-35 2.8E-40 348.4 22.2 205 591-811 2-233 (343)
340 cd03231 ABC_CcmA_heme_exporter 100.0 1.7E-35 3.7E-40 325.3 21.7 194 1208-1415 1-198 (201)
341 cd03232 ABC_PDR_domain2 The pl 100.0 6.6E-36 1.4E-40 326.0 18.2 178 1207-1421 3-189 (192)
342 cd03245 ABCC_bacteriocin_expor 100.0 3.2E-35 6.9E-40 328.1 23.9 204 590-801 2-220 (220)
343 cd03214 ABC_Iron-Siderophores_ 100.0 9.9E-36 2.2E-40 321.3 19.0 174 1209-1421 1-177 (180)
344 PRK00349 uvrA excinuclease ABC 100.0 6.4E-35 1.4E-39 376.1 29.2 95 714-808 483-585 (943)
345 COG3638 ABC-type phosphate/pho 100.0 6.2E-36 1.3E-40 316.9 16.1 201 589-808 2-237 (258)
346 COG4619 ABC-type uncharacteriz 100.0 7.1E-36 1.5E-40 298.0 15.5 196 1215-1420 9-212 (223)
347 COG1124 DppF ABC-type dipeptid 100.0 2.7E-35 5.8E-40 315.0 20.9 212 590-816 3-239 (252)
348 PRK10419 nikE nickel transport 100.0 2.6E-35 5.6E-40 338.0 21.8 205 1207-1421 3-231 (268)
349 PRK13538 cytochrome c biogenes 100.0 2.9E-35 6.3E-40 324.2 20.9 194 1208-1415 2-202 (204)
350 TIGR02142 modC_ABC molybdenum 100.0 2.1E-35 4.5E-40 351.0 21.0 195 1212-1421 4-211 (354)
351 PRK11432 fbpC ferric transport 100.0 3.6E-35 7.8E-40 346.5 22.6 204 590-814 6-232 (351)
352 PRK13631 cbiO cobalt transport 100.0 4.4E-35 9.5E-40 342.6 23.0 207 588-808 19-265 (320)
353 PRK15056 manganese/iron transp 100.0 3.8E-35 8.3E-40 337.5 22.1 198 1207-1421 6-220 (272)
354 cd03261 ABC_Org_Solvent_Resist 100.0 3.5E-35 7.5E-40 331.1 21.3 198 591-808 1-226 (235)
355 PRK09544 znuC high-affinity zi 100.0 4.3E-35 9.3E-40 332.4 22.0 189 1207-1420 4-198 (251)
356 COG0410 LivF ABC-type branched 100.0 3.1E-35 6.8E-40 312.5 19.5 203 1207-1421 3-216 (237)
357 cd03216 ABC_Carb_Monos_I This 100.0 5.2E-35 1.1E-39 310.2 20.9 158 1208-1421 1-161 (163)
358 TIGR03265 PhnT2 putative 2-ami 100.0 4.3E-35 9.3E-40 346.6 22.2 205 590-814 4-230 (353)
359 CHL00131 ycf16 sulfate ABC tra 100.0 4.6E-35 1E-39 333.6 21.5 204 1207-1421 7-231 (252)
360 TIGR02323 CP_lyasePhnK phospho 100.0 6.4E-35 1.4E-39 332.6 21.5 203 1207-1421 3-228 (253)
361 COG4555 NatA ABC-type Na+ tran 100.0 2.1E-35 4.5E-40 304.0 15.6 201 1208-1421 2-212 (245)
362 cd03296 ABC_CysA_sulfate_impor 100.0 1E-34 2.3E-39 327.9 22.9 197 591-808 3-226 (239)
363 cd03267 ABC_NatA_like Similar 100.0 4.4E-35 9.4E-40 330.1 19.7 188 1222-1421 34-233 (236)
364 PRK09452 potA putrescine/sperm 100.0 1E-34 2.2E-39 344.8 23.6 203 589-811 13-237 (375)
365 PRK13643 cbiO cobalt transport 100.0 7.7E-35 1.7E-39 337.2 22.0 203 591-808 2-233 (288)
366 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-34 2.3E-39 323.3 22.3 197 592-796 2-218 (218)
367 PRK13540 cytochrome c biogenes 100.0 7.3E-35 1.6E-39 320.1 20.3 193 1208-1414 2-198 (200)
368 PRK13637 cbiO cobalt transport 100.0 7.6E-35 1.6E-39 337.1 21.5 205 590-808 2-234 (287)
369 PRK13634 cbiO cobalt transport 100.0 8.2E-35 1.8E-39 337.3 21.7 203 591-808 3-235 (290)
370 COG1118 CysA ABC-type sulfate/ 100.0 3.1E-35 6.8E-40 321.5 16.9 200 1207-1421 2-217 (345)
371 PRK13543 cytochrome c biogenes 100.0 1.3E-34 2.8E-39 321.5 22.1 195 1207-1417 11-212 (214)
372 TIGR01184 ntrCD nitrate transp 100.0 7.1E-35 1.5E-39 327.1 20.2 181 1225-1421 1-194 (230)
373 TIGR03258 PhnT 2-aminoethylpho 100.0 9.5E-35 2.1E-39 344.0 22.3 203 589-811 4-231 (362)
374 PRK11000 maltose/maltodextrin 100.0 1.1E-34 2.4E-39 345.7 22.8 202 590-811 3-226 (369)
375 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-34 2.3E-39 327.4 21.0 198 591-808 1-232 (236)
376 PRK10851 sulfate/thiosulfate t 100.0 1.6E-34 3.5E-39 341.6 23.4 202 590-811 2-229 (353)
377 PRK13539 cytochrome c biogenes 100.0 1.6E-34 3.5E-39 319.0 21.7 193 1208-1417 3-200 (207)
378 TIGR02324 CP_lyasePhnL phospho 100.0 1.1E-34 2.5E-39 324.5 20.5 198 1208-1415 2-222 (224)
379 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-34 2.6E-39 325.0 20.6 194 591-805 1-226 (227)
380 PRK09580 sufC cysteine desulfu 100.0 1E-34 2.2E-39 330.1 20.0 202 1208-1421 2-225 (248)
381 PRK14250 phosphate ABC transpo 100.0 3.1E-34 6.7E-39 324.3 23.9 199 590-808 3-221 (241)
382 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-34 2.7E-39 321.7 20.2 190 591-801 1-213 (213)
383 PRK13650 cbiO cobalt transport 100.0 1.7E-34 3.8E-39 332.9 22.2 201 590-808 4-229 (279)
384 TIGR01189 ccmA heme ABC export 100.0 1.7E-34 3.7E-39 316.7 21.0 193 1208-1415 1-198 (198)
385 TIGR00972 3a0107s01c2 phosphat 100.0 2.2E-34 4.7E-39 327.0 22.5 202 590-808 1-232 (247)
386 PRK03695 vitamin B12-transport 100.0 1.4E-34 3.1E-39 328.2 21.1 196 1208-1421 1-212 (248)
387 PRK13651 cobalt transporter AT 100.0 1.9E-34 4.1E-39 335.3 22.4 203 591-808 3-254 (305)
388 PRK14242 phosphate transporter 100.0 2.4E-34 5.1E-39 327.9 22.5 203 589-808 5-237 (253)
389 TIGR00960 3a0501s02 Type II (G 100.0 1.2E-34 2.6E-39 322.5 19.1 188 591-797 2-216 (216)
390 cd03265 ABC_DrrA DrrA is the A 100.0 1.6E-34 3.4E-39 322.4 19.9 196 591-806 1-219 (220)
391 PRK14269 phosphate ABC transpo 100.0 3E-34 6.5E-39 325.6 22.4 202 590-808 2-230 (246)
392 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.1E-34 1.1E-38 315.3 23.7 188 589-802 5-206 (207)
393 PRK13647 cbiO cobalt transport 100.0 1.8E-34 4E-39 331.9 20.9 198 590-806 4-225 (274)
394 PRK14273 phosphate ABC transpo 100.0 4.2E-34 9.1E-39 326.0 23.5 203 589-808 6-238 (254)
395 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.1E-34 4.5E-39 321.5 20.5 197 591-803 1-218 (220)
396 PRK13646 cbiO cobalt transport 100.0 2.8E-34 6.1E-39 332.4 21.7 204 590-808 2-235 (286)
397 PRK13549 xylose transporter AT 100.0 3.2E-34 7E-39 358.2 23.9 202 1207-1421 5-222 (506)
398 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-34 6.7E-39 317.3 21.0 191 591-801 1-208 (208)
399 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-34 4.8E-39 317.6 19.8 186 593-798 2-205 (205)
400 TIGR00630 uvra excinuclease AB 100.0 1.3E-33 2.9E-38 363.2 30.0 94 714-807 481-582 (924)
401 TIGR02315 ABC_phnC phosphonate 100.0 3.2E-34 6.9E-39 325.0 21.5 197 591-807 2-234 (243)
402 PRK11607 potG putrescine trans 100.0 3.8E-34 8.3E-39 340.6 23.2 205 588-812 17-243 (377)
403 PRK13537 nodulation ABC transp 100.0 3.2E-34 7E-39 334.1 22.0 199 589-808 6-227 (306)
404 COG1137 YhbG ABC-type (unclass 100.0 1.9E-35 4.1E-40 303.9 10.2 202 1206-1420 3-217 (243)
405 PRK11153 metN DL-methionine tr 100.0 3.5E-34 7.5E-39 338.9 22.4 202 591-809 2-231 (343)
406 cd03256 ABC_PhnC_transporter A 100.0 3.3E-34 7.1E-39 324.5 21.1 198 591-807 1-233 (241)
407 PRK15439 autoinducer 2 ABC tra 100.0 3.9E-34 8.5E-39 357.3 23.9 202 1207-1421 11-219 (510)
408 PRK10762 D-ribose transporter 100.0 4.1E-34 8.9E-39 356.9 23.7 202 1207-1421 4-220 (501)
409 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.4E-34 5.2E-39 320.6 19.3 190 591-797 1-218 (218)
410 PRK11288 araG L-arabinose tran 100.0 4E-34 8.7E-39 357.0 23.5 202 1207-1421 4-219 (501)
411 cd03263 ABC_subfamily_A The AB 100.0 3.9E-34 8.5E-39 319.3 20.9 197 591-806 1-219 (220)
412 cd03248 ABCC_TAP TAP, the Tran 100.0 6.4E-34 1.4E-38 318.9 22.3 203 588-797 9-226 (226)
413 PRK09700 D-allose transporter 100.0 3.8E-34 8.3E-39 358.2 22.9 202 1207-1421 5-224 (510)
414 TIGR01166 cbiO cobalt transpor 100.0 1.8E-34 3.9E-39 314.5 17.3 173 1222-1405 5-189 (190)
415 cd03235 ABC_Metallic_Cations A 100.0 4E-34 8.6E-39 317.6 20.1 187 593-800 2-212 (213)
416 PRK11247 ssuB aliphatic sulfon 100.0 7.6E-34 1.6E-38 322.9 22.8 195 589-804 11-219 (257)
417 PRK13644 cbiO cobalt transport 100.0 5.7E-34 1.2E-38 327.8 21.9 199 591-808 2-224 (274)
418 PRK13635 cbiO cobalt transport 100.0 7.1E-34 1.5E-38 327.6 22.7 201 589-808 4-229 (279)
419 PRK10744 pstB phosphate transp 100.0 1.1E-33 2.3E-38 323.6 24.0 203 589-808 12-244 (260)
420 TIGR01288 nodI ATP-binding ABC 100.0 5.8E-34 1.3E-38 332.5 22.2 201 588-808 2-224 (303)
421 cd03218 ABC_YhbG The ABC trans 100.0 5.7E-34 1.2E-38 320.6 21.4 197 591-808 1-222 (232)
422 cd03224 ABC_TM1139_LivF_branch 100.0 5.6E-34 1.2E-38 318.5 21.1 197 591-807 1-220 (222)
423 TIGR02770 nickel_nikD nickel i 100.0 1.7E-34 3.6E-39 324.3 16.8 188 1224-1421 1-205 (230)
424 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.8E-34 8.3E-39 328.5 20.0 185 611-808 37-250 (269)
425 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7E-34 1.5E-38 320.6 21.7 197 591-808 2-221 (236)
426 cd03301 ABC_MalK_N The N-termi 100.0 4.6E-34 9.9E-39 317.1 19.8 191 591-801 1-213 (213)
427 COG0444 DppD ABC-type dipeptid 100.0 3E-34 6.4E-39 320.6 18.0 206 1208-1421 2-233 (316)
428 PRK13641 cbiO cobalt transport 100.0 7.5E-34 1.6E-38 329.0 22.1 204 590-808 2-234 (287)
429 PRK11629 lolD lipoprotein tran 100.0 8.1E-34 1.7E-38 319.5 21.4 196 590-802 5-228 (233)
430 PRK09536 btuD corrinoid ABC tr 100.0 6.6E-34 1.4E-38 339.6 21.7 198 590-808 3-228 (402)
431 cd03258 ABC_MetN_methionine_tr 100.0 8.1E-34 1.7E-38 319.6 21.2 201 591-808 2-230 (233)
432 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.6E-34 1.9E-38 321.1 21.5 201 591-808 1-225 (242)
433 PRK13541 cytochrome c biogenes 100.0 5.3E-34 1.1E-38 312.0 19.0 188 1208-1413 2-193 (195)
434 PRK13636 cbiO cobalt transport 100.0 9.1E-34 2E-38 327.6 22.1 199 590-808 5-231 (283)
435 cd03266 ABC_NatA_sodium_export 100.0 7.4E-34 1.6E-38 316.6 20.5 194 591-801 2-218 (218)
436 COG4175 ProV ABC-type proline/ 100.0 4.1E-34 8.9E-39 312.3 17.6 194 613-818 43-264 (386)
437 PRK14235 phosphate transporter 100.0 1.3E-33 2.8E-38 323.9 22.6 205 587-808 16-251 (267)
438 PRK09493 glnQ glutamine ABC tr 100.0 1.4E-33 3.1E-38 319.0 22.6 197 591-808 2-225 (240)
439 PRK14251 phosphate ABC transpo 100.0 1.1E-33 2.3E-38 322.2 21.7 202 590-808 4-235 (251)
440 PRK14274 phosphate ABC transpo 100.0 1.4E-33 3E-38 322.6 22.6 202 590-808 12-243 (259)
441 cd03264 ABC_drug_resistance_li 100.0 6.9E-34 1.5E-38 315.2 19.5 189 591-801 1-211 (211)
442 PRK00635 excinuclease ABC subu 100.0 4.8E-33 1E-37 370.7 31.1 199 1207-1420 600-895 (1809)
443 COG4615 PvdE ABC-type sideroph 100.0 7.2E-31 1.6E-35 292.7 43.2 500 266-800 4-529 (546)
444 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-33 2.3E-38 305.0 20.2 165 591-801 1-178 (178)
445 PRK14268 phosphate ABC transpo 100.0 1.4E-33 3E-38 322.4 22.2 203 589-808 11-242 (258)
446 PRK14259 phosphate ABC transpo 100.0 2.7E-33 6E-38 321.4 24.7 204 588-808 11-253 (269)
447 PRK10938 putative molybdenum t 100.0 7.5E-34 1.6E-38 354.0 21.8 201 1207-1421 3-214 (490)
448 PRK13536 nodulation factor exp 100.0 1.1E-33 2.5E-38 332.8 21.9 201 588-808 39-261 (340)
449 cd03269 ABC_putative_ATPase Th 100.0 9E-34 1.9E-38 314.0 19.9 191 591-801 1-210 (210)
450 PRK14270 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 320.3 22.8 202 590-808 4-235 (251)
451 PRK14245 phosphate ABC transpo 100.0 1.2E-33 2.6E-38 321.5 21.3 202 590-808 3-234 (250)
452 PRK14248 phosphate ABC transpo 100.0 2E-33 4.4E-38 322.8 23.4 203 589-808 20-252 (268)
453 PRK13640 cbiO cobalt transport 100.0 1.3E-33 2.8E-38 326.2 21.8 202 588-808 3-232 (282)
454 PRK11831 putative ABC transpor 100.0 1.5E-33 3.2E-38 323.8 22.1 199 589-808 6-233 (269)
455 PRK14239 phosphate transporter 100.0 1.6E-33 3.4E-38 321.1 22.1 202 590-808 5-236 (252)
456 PRK14249 phosphate ABC transpo 100.0 2.5E-33 5.4E-38 319.1 23.3 202 590-808 4-235 (251)
457 PRK14247 phosphate ABC transpo 100.0 2.4E-33 5.1E-38 319.1 23.1 202 590-808 3-234 (250)
458 PRK13649 cbiO cobalt transport 100.0 1.4E-33 2.9E-38 326.3 21.3 204 590-808 2-234 (280)
459 PRK11264 putative amino-acid A 100.0 1.7E-33 3.6E-38 320.4 21.6 198 590-808 3-233 (250)
460 TIGR02211 LolD_lipo_ex lipopro 100.0 1.6E-33 3.5E-38 314.6 20.8 191 591-798 2-220 (221)
461 PRK10619 histidine/lysine/argi 100.0 2.1E-33 4.6E-38 320.7 22.2 200 589-808 4-241 (257)
462 cd03298 ABC_ThiQ_thiamine_tran 100.0 2E-33 4.4E-38 311.4 21.3 188 591-801 1-211 (211)
463 PRK10261 glutathione transport 100.0 8.6E-34 1.9E-38 361.1 21.0 207 1207-1421 12-248 (623)
464 TIGR03411 urea_trans_UrtD urea 100.0 1.9E-33 4.2E-38 318.4 21.5 197 591-808 3-231 (242)
465 PRK14237 phosphate transporter 100.0 2.7E-33 5.9E-38 321.3 23.0 204 588-808 18-251 (267)
466 KOG0060 Long-chain acyl-CoA tr 100.0 8E-31 1.7E-35 306.2 43.7 337 1070-1418 269-642 (659)
467 PRK11231 fecE iron-dicitrate t 100.0 2.2E-33 4.8E-38 320.2 22.1 198 591-808 3-227 (255)
468 PRK13632 cbiO cobalt transport 100.0 2E-33 4.3E-38 323.1 21.8 202 589-808 6-231 (271)
469 TIGR03410 urea_trans_UrtE urea 100.0 1.7E-33 3.7E-38 316.3 20.8 198 591-807 1-220 (230)
470 TIGR02633 xylG D-xylose ABC tr 100.0 2E-33 4.3E-38 351.1 23.7 202 1208-1421 2-220 (500)
471 PRK13645 cbiO cobalt transport 100.0 1.7E-33 3.7E-38 326.7 21.3 205 589-808 5-240 (289)
472 PRK11300 livG leucine/isoleuci 100.0 2.3E-33 5.1E-38 320.2 22.0 199 590-808 5-243 (255)
473 PRK14243 phosphate transporter 100.0 3.3E-33 7.2E-38 320.0 23.2 203 589-808 9-248 (264)
474 PRK15079 oligopeptide ABC tran 100.0 2.6E-33 5.5E-38 329.0 22.7 217 588-816 6-259 (331)
475 PRK14240 phosphate transporter 100.0 3.3E-33 7.1E-38 318.0 22.9 202 590-808 3-234 (250)
476 PRK13548 hmuV hemin importer A 100.0 3.9E-33 8.6E-38 318.3 23.4 197 591-808 3-230 (258)
477 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-33 3.1E-38 334.1 20.2 188 611-810 37-256 (382)
478 PRK14267 phosphate ABC transpo 100.0 2.9E-33 6.2E-38 319.0 22.0 202 590-808 4-237 (253)
479 PRK10253 iron-enterobactin tra 100.0 3.2E-33 6.9E-38 320.5 22.4 202 587-808 4-233 (265)
480 COG2884 FtsE Predicted ATPase 100.0 1.8E-33 3.8E-38 287.7 17.9 192 591-801 2-219 (223)
481 TIGR02673 FtsE cell division A 100.0 1.4E-33 3.1E-38 313.4 18.8 187 591-796 2-214 (214)
482 cd03292 ABC_FtsE_transporter F 100.0 1.7E-33 3.7E-38 312.8 19.3 188 591-797 1-214 (214)
483 cd03257 ABC_NikE_OppD_transpor 100.0 1.8E-33 4E-38 315.7 19.7 195 591-801 2-228 (228)
484 COG4178 ABC-type uncharacteriz 100.0 8.7E-30 1.9E-34 308.0 52.7 435 338-793 106-587 (604)
485 PRK10895 lipopolysaccharide AB 100.0 3.3E-33 7.1E-38 316.2 21.8 198 590-808 3-226 (241)
486 PRK10982 galactose/methyl gala 100.0 2.4E-33 5.2E-38 349.4 22.7 199 1210-1421 1-213 (491)
487 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-33 3.8E-38 312.0 19.2 186 593-796 2-211 (211)
488 PRK10575 iron-hydroxamate tran 100.0 3.1E-33 6.8E-38 320.6 21.8 200 588-808 9-237 (265)
489 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-33 6.5E-38 297.6 20.1 160 591-795 1-163 (166)
490 PRK10247 putative ABC transpor 100.0 2.7E-33 5.9E-38 313.3 20.7 197 588-804 5-223 (225)
491 PRK11124 artP arginine transpo 100.0 3.7E-33 8E-38 316.0 22.1 198 590-808 2-230 (242)
492 PRK11614 livF leucine/isoleuci 100.0 4.1E-33 8.9E-38 314.6 22.4 204 590-808 5-226 (237)
493 PRK10584 putative ABC transpor 100.0 3.9E-33 8.4E-38 313.0 22.0 195 589-800 5-227 (228)
494 PRK15134 microcin C ABC transp 100.0 2E-33 4.2E-38 353.1 21.6 207 1207-1421 5-236 (529)
495 TIGR01188 drrA daunorubicin re 100.0 1.6E-33 3.5E-38 328.6 19.3 185 611-808 6-213 (302)
496 COG1123 ATPase components of v 100.0 1.8E-33 4E-38 335.9 20.1 206 1207-1421 5-234 (539)
497 PRK14238 phosphate transporter 100.0 4.4E-33 9.5E-38 320.1 22.6 203 589-808 23-255 (271)
498 PRK13648 cbiO cobalt transport 100.0 3.7E-33 8.1E-38 320.6 22.0 200 590-808 7-231 (269)
499 PRK13642 cbiO cobalt transport 100.0 3.6E-33 7.8E-38 321.8 21.9 201 590-808 4-229 (277)
500 PRK14236 phosphate transporter 100.0 4.8E-33 1E-37 320.1 22.8 204 588-808 23-256 (272)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-271 Score=2574.13 Aligned_cols=1207 Identities=43% Similarity=0.740 Sum_probs=1128.4
Q ss_pred CCCcccCCH--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 000560 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1421)
Q Consensus 201 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1421)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.++++|+++|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999999854 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1421)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~ 355 (1421)
++++.++++.+.+.+.|++|.+|+.+++|+++++. ..+. ||++|+++|++.++++++.|||+|..+++|+|+|++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998843 3445 999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000560 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1421)
Q Consensus 356 ~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1421)
+||+|+|++++.++ +.|+|+|+|++|++|+.++++++|.+|.+|+|+++++++||+++| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999999886 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1421)
Q Consensus 433 ~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 512 (1421)
.+++++++++|++.|+.+|+|++.|||+|+|||+|||||||++|.++|+++|++|++++||..|..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 000560 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1421)
Q Consensus 513 ~~~tF~~~~-~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1421)
+++||++|+ ..|+.++++++|+++|+||+|+.|+.++|..++.++|++||++|+++||..+| +++..++.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999999 5555544455556778
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCEEEEEcCCCc
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv~Q~~~ 669 (1421)
|+++|++|+|+++ ++.++|+| ||+|++|+++||||++||||||||++|+||+++.+|++ .++|++|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999985 45679999 99999999999999999999999999999999999998 99999999999999
Q ss_pred CCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCC
Q 000560 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1421)
Q Consensus 670 i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 749 (1421)
|+|+||||||+||.|||++||++|+++|+|++|++.+|+||+|+|||+|.||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCC
Q 000560 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1421)
Q Consensus 750 aLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (1421)
|||+|+++|||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++ .+.++.++..+.+. +..+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~~--~~~~ 749 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEES--EQEE 749 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccch--hhcc
Confidence 99999999999999999999999999999999999999999999999999999999997 67777776322211 1111
Q ss_pred CCCCCcccc---cCcc-----cccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000560 830 PPQEDKCLS---RVPC-----QMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQV 901 (1421)
Q Consensus 830 ~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~ 901 (1421)
+........ ..+. .......+ +....+.+..+..++|+++.|.++|++|+.|+++.+|+..+++++++.+
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v 827 (1381)
T KOG0054|consen 750 EASEKDLESGESSRESESRSLESLSSEEE--KSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFV 827 (1381)
T ss_pred ccccccccccccccchhhhhhhhhccccc--ccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 000000000 0000 00000000 0011112245667788999999999999999999888888888888999
Q ss_pred HHHHHHhhhHHHHHhhccccc--c---ccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000560 902 LFQALQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1421)
Q Consensus 902 ~~~~~~~~~~~wl~~~~~~~~--~---~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~s 976 (1421)
+.++++++++||+++|++... . .+...|+++|++++++++++.+++++.+..+++++|+++|++|+++++|+||+
T Consensus 828 ~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~ 907 (1381)
T KOG0054|consen 828 LTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMS 907 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 999999999999999996432 1 35678999999999999999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056 (1421)
Q Consensus 977 ffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~r 1056 (1421)
|||+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||++|
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR 987 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR 987 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLP 1136 (1421)
Q Consensus 1057 l~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~ 1136 (1421)
+++.+|||+++||+||+.|+.|||||++|++|.+++..++|.+++++|+..+++||+++|+|+++++++++++++++..+
T Consensus 988 LesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~ 1067 (1381)
T KOG0054|consen 988 LESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP 1067 (1381)
T ss_pred hhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeee
Q 000560 1137 RSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQ 1216 (1421)
Q Consensus 1137 ~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~ 1216 (1421)
.+..+||.+|++++|+++++..++|.+++.+++|++|+||||+.||.++|+|+|+..+..+||++||++|+|+|+|+++|
T Consensus 1068 ~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~R 1147 (1381)
T KOG0054|consen 1068 SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLR 1147 (1381)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEE
Confidence 66678999999999999999999999999999999999999999999999998877777779999999999999999999
Q ss_pred eCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCcccc
Q 000560 1217 YNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296 (1421)
Q Consensus 1217 Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1296 (1421)
|+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||+++++|||||+||+
T Consensus 1148 Yrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs 1227 (1381)
T KOG0054|consen 1148 YRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS 1227 (1381)
T ss_pred eCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCC
Q 000560 1297 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1376 (1421)
Q Consensus 1297 gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD 1376 (1421)
||||+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|
T Consensus 1228 GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1228 GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1377 TATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1377 ~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
++||..||++||++|+|||||+||||++||+|||||+|||+|+|+
T Consensus 1308 ~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 999999999999999999999999999999999999999999985
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.3e-207 Score=2089.16 Aligned_cols=1388 Identities=31% Similarity=0.504 Sum_probs=1152.5
Q ss_pred chhhcchhhhhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhHHHHHHHHHHHHHHHHHhHhhHhhhhhc-ccc
Q 000560 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSF 83 (1421)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (1421)
+...-.|.++.++..+++++++...+....+......... ...+....+.++|+....+++...+... ....+ .+
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 106 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNLDGQTS- 106 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccc-
Confidence 3344467677777777776666655554422111111101 1222345556666666666654443332 11111 12
Q ss_pred ccchhHHHHHHHHHHHHHH--HHHHH---hccccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhH
Q 000560 84 KSVSLVVTWALATVVALCS--RYYRT---LGEHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155 (1421)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1421)
+...+...+..+++..+++ ++.+. ..+.+++++.+++||++. .++.+ . ........... ....+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~ 180 (1622)
T PLN03130 107 LPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNL-V---LSVKEYYSSFV--LYLYISE 180 (1622)
T ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHH-H---HHHHHHHhccc--cceehhH
Confidence 2334444355566666652 11111 111456799999999998 65544 2 11222222110 0112222
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCCCCCCC----C--CccccccccccCCCCcccCCHhHHHHHHhHHHHHHhhccCC
Q 000560 156 VDFVSLPLLVLLCFNATYACCCARDPSDLDIP----L--LREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQK 229 (1421)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~ 229 (1421)
+.+.+.+.+..+. .+.|..+. ..+.| . ..+.++.+.+.+++||++||+|||++|||++|++++||+++
T Consensus 181 ~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~ 254 (1622)
T PLN03130 181 VAAQVLFGILLLV----YFPNLDPY--PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRP 254 (1622)
T ss_pred HHHHHHHHHHHHH----HHhcCCCC--cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 2222221111100 01112211 01111 0 00111123346789999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000560 230 LELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGK 308 (1421)
Q Consensus 230 L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~ 308 (1421)
|+.+|||+|+++|+++.++++|++.|+++.+ ++|+|+++++++||+.++..++++++.+++.+++|++++.+++++.++
T Consensus 255 L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~ 334 (1622)
T PLN03130 255 LTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG 334 (1622)
T ss_pred CChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998754 458999999999999999999999999999999999999999999764
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHHhHHHH
Q 000560 309 HDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERI 385 (1421)
Q Consensus 309 ~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri 385 (1421)
+. ... |+++++++++..++.+++.++|++...++++++|+.+...||+|.++++.... ++|+++|+|++|++++
T Consensus 335 ~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i 411 (1622)
T PLN03130 335 EP--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEAL 411 (1622)
T ss_pred Cc--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHH
Confidence 42 344 78888877777777788888999999999999999999999999999987544 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000560 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMR 465 (1421)
Q Consensus 386 ~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik 465 (1421)
.+++.++|.+|..|+++++++++||..+| +++++|++++++++|++.++++++++.++++|+.+|+|++.++|+|+|||
T Consensus 412 ~~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~ 490 (1622)
T PLN03130 412 QQICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMD 490 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000560 466 VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1421)
Q Consensus 466 ~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~p 545 (1421)
+||+||||+.|.+++++.|++|+++.++..+..++..+++...|.++++++|++|.+.++++|++.+|+++++|++++.|
T Consensus 491 ~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~p 570 (1622)
T PLN03130 491 TVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 570 (1622)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888889888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCc
Q 000560 546 IYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGS 624 (1421)
Q Consensus 546 l~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~ 624 (1421)
+..+|..+..+.++++|++||++||..+|..+... .+.......|+++|++|+|+.+ ++.++|+| ||++++|+
T Consensus 571 l~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDSK-----AERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccCC-----CCCceeeceeEEecCCC
Confidence 99999999999999999999999998776321111 1111123469999999999854 34678999 99999999
Q ss_pred EEEEEccCCCChHHHHHHHcCCccCCC-CcEEEECCEEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhH
Q 000560 625 KVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1421)
Q Consensus 625 ~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~vi~~~g~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl 703 (1421)
+++|+||+|||||||+++|+|+++|.+ |++ .+++++|||+|+||++++||||||+||+++++++|++++++|+|.+|+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999 887 899999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccch
Q 000560 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1421)
Q Consensus 704 ~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 783 (1421)
+.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+|++++++++++.+.+++||+|+|||+++.+
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l 803 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL 803 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCc-c-cccCcccc--cchhhhhcc-CCCCC
Q 000560 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK-C-LSRVPCQM--SQITEERFA-RPISC 858 (1421)
Q Consensus 784 ~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~-~~~~~ 858 (1421)
+.||+|++|+||+|+++|+++|+.+ .+..+.++...+....+..+...+.. . ....+... ......... .....
T Consensus 804 ~~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1622)
T PLN03130 804 SQVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSK 882 (1622)
T ss_pred HhCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999987 55566665543321110000000000 0 00000000 000000000 00000
Q ss_pred CCCCCCCccchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccc--cccccchhhhHHHh
Q 000560 859 GEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFL 936 (1421)
Q Consensus 859 ~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l 936 (1421)
.......++|+++.|.++|++|+.|+++.++.+.+.+++++.++.+++.+++++|+++|++... ......|+++|+++
T Consensus 883 ~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l 962 (1622)
T PLN03130 883 EGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALL 962 (1622)
T ss_pred ccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHH
Confidence 1112345678889999999999999998776666666666777788888999999999986322 12234678889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHH
Q 000560 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1421)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l 1016 (1421)
+++..++.+++.+++...+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.++
T Consensus 963 ~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i 1042 (1622)
T PLN03130 963 SFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL 1042 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 000560 1017 SIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLI 1096 (1421)
Q Consensus 1017 ~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~ 1096 (1421)
+.++++++++|..+++++|+.++++.++++|.+++|+++|.+.++++|+++|+.|+++|+.|||+|+++++|.+++.+..
T Consensus 1043 ~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~ 1122 (1622)
T PLN03130 1043 STFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSM 1122 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHH
Confidence 99999998888777778888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1097 DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA-----IDPSLAGLAATYGLNLNVLQAWVIWNLCNVEN 1171 (1421)
Q Consensus 1097 d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~ 1171 (1421)
|.+.+..+.....++|++.++++++++++.+.+.+.+.. .+. ..++.+|++++|++.+...+.++++.+.++|+
T Consensus 1123 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1123 DNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887665554443322 221 12678899999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHH
Q 000560 1172 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251 (1421)
Q Consensus 1172 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTL 1251 (1421)
.++|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTL 1281 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSM 1281 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999999988765444455667899999999999999999887789999999999999999999999999999
Q ss_pred HHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcc
Q 000560 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1331 (1421)
Q Consensus 1252 i~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp 1331 (1421)
+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|
T Consensus 1282 l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130 1282 LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCE
Q 000560 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1411 (1421)
Q Consensus 1332 ~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~Dr 1411 (1421)
+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+++|||
T Consensus 1362 ~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~Dr 1441 (1622)
T PLN03130 1362 LGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1441 (1622)
T ss_pred cccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeeC
Q 000560 1412 VLVLDEGKLK 1421 (1421)
Q Consensus 1412 IlvL~~G~Iv 1421 (1421)
|+|||+|+|+
T Consensus 1442 IlVLd~G~Iv 1451 (1622)
T PLN03130 1442 ILVLDAGRVV 1451 (1622)
T ss_pred EEEEECCEEE
Confidence 9999999985
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.5e-203 Score=2053.63 Aligned_cols=1388 Identities=30% Similarity=0.497 Sum_probs=1148.4
Q ss_pred hhhcchhhhhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhHHHHHHHHHHHHHHHHHhHhhHhhhhhc-cccc
Q 000560 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSFK 84 (1421)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (1421)
...-.|.++..+..++++++....+....+++....+.. ...+....+.++|+....+++...+... ....+ .. +
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 107 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISL-FDMDEETD-L 107 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccc-c
Confidence 334456666677777776666665554432222211101 1222345556666666666553333222 11111 12 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-----cccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 000560 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1421)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1421)
...+...+..+++..+++.+.+.++ +.+++++.+++||++. .++.+ . ........... ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1495)
T PLN03232 108 PPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDL-V---LPLKNSINRTA--LYLCISSR 181 (1495)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3344443555666666621111111 1456799999999998 65544 2 11111111100 01122222
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCCC----CCCc--cccccccccCCCCcccCCHhHHHHHHhHHHHHHhhccCCC
Q 000560 157 DFVSLPLLVLLCFNATYACCCARDPSDLDI----PLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKL 230 (1421)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L 230 (1421)
.+.+.+.+..+.. +.|..+. +... +..+ +.+..+.+.+++||++||+|||++|||++|++++||+++|
T Consensus 182 ~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L 255 (1495)
T PLN03232 182 CCQALFGILLLVY----IPELDPY--PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPI 255 (1495)
T ss_pred HHHHHHHHHHHHh----cccCCCC--CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222211111000 1112111 0010 0011 0011233567899999999999999999999999999999
Q ss_pred CCCCCCCCCcCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000560 231 ELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH 309 (1421)
Q Consensus 231 ~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~ 309 (1421)
+.+|||+|+++|+++.++++|++.|+++.+ ++++++++++++||+.++..++++++.+++.+++|++++.+++++++++
T Consensus 256 ~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~ 335 (1495)
T PLN03232 256 TEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD 335 (1495)
T ss_pred ChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998754 4589999999999999999999999999999999999999999997654
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHHhHHHHH
Q 000560 310 DHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIG 386 (1421)
Q Consensus 310 ~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~ 386 (1421)
. ... |+.+++++++..++.+++.++|++...+++.++|+.+...+|+|.++++.... ++|+++|+|++|++++.
T Consensus 336 ~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~ 412 (1495)
T PLN03232 336 P--AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQ 412 (1495)
T ss_pred c--cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2 334 88889899999999999999999999999999999999999999999987643 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000560 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466 (1421)
Q Consensus 387 ~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~ 466 (1421)
++..++|.+|..|++++++++++|..+| +++++|++++++++|++..+++++++.++++|+.+|+|.+.++|+|+|||+
T Consensus 413 ~~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~ 491 (1495)
T PLN03232 413 QIAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDT 491 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999899999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000560 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (1421)
Q Consensus 467 IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl 546 (1421)
||+|+||+.|.+++++.|++|++..++..+..+...++....|.++++++|++|.+.++++|++.+|+++++++.+..|+
T Consensus 492 IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl 571 (1495)
T PLN03232 492 VKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPL 571 (1495)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888887777777888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcE
Q 000560 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSK 625 (1421)
Q Consensus 547 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~ 625 (1421)
..+|..+..+.++++|++||++||+.+|+.+... .+.......|+++|++|+|+.+ ++.++|+| ||++++||+
T Consensus 572 ~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~ 645 (1495)
T PLN03232 572 NMLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSL 645 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCE
Confidence 9999999999999999999999998776321111 1111123469999999999864 34679999 999999999
Q ss_pred EEEEccCCCChHHHHHHHcCCccCCCCcEEEECCEEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHh
Q 000560 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1421)
Q Consensus 626 ~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~ 705 (1421)
++|+||+|||||||+++|+|+++|.+|++..+++++|||+|+||++++||||||+||+++++++|++++++|+|.+|++.
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~ 725 (1495)
T PLN03232 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDL 725 (1495)
T ss_pred EEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHh
Confidence 99999999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc
Q 000560 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785 (1421)
Q Consensus 706 ~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 785 (1421)
+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.
T Consensus 726 Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~ 805 (1495)
T PLN03232 726 LPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL 805 (1495)
T ss_pred CCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred cCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCC-CCcccccCcccccchhhhhccCCC-CCCCCCC
Q 000560 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ-EDKCLSRVPCQMSQITEERFARPI-SCGEFSG 863 (1421)
Q Consensus 786 ~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 863 (1421)
||+|++|+||+|+++|+++|+.+ .+..+.++...+....+..+..+ .+......+.......+....... .+.....
T Consensus 806 aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1495)
T PLN03232 806 MDRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSV 884 (1495)
T ss_pred CCEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhh
Confidence 99999999999999999999987 55556665543321110000000 000000000000000000000000 0001123
Q ss_pred CCccchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccc--cccccchhhhHHHhHhHHH
Q 000560 864 RSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSS 941 (1421)
Q Consensus 864 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~ 941 (1421)
..++|+++.|.++|++|+.|+++.++.+.+.+++++.++.+++.+++++|+++|++... ......|+++|++++++..
T Consensus 885 ~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~ 964 (1495)
T PLN03232 885 LVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQV 964 (1495)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHH
Confidence 45678889999999999999999876666666666677788888999999999985321 2234578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000560 942 FFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1421)
Q Consensus 942 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v 1021 (1421)
++.+++.+++...+.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.+++
T Consensus 965 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 965 AVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000560 1022 MSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1101 (1421)
Q Consensus 1022 ~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~ 1101 (1421)
++..++...++++|+.++++.++.+|.+++|+++|.+..+++|+++|++|+++|+.|||+|+.+++|.+++.+..|.+.+
T Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1045 IGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 88888777777778777777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000560 1102 VTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI-----DPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISV 1176 (1421)
Q Consensus 1102 ~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sv 1176 (1421)
..+.....++|+..++++++.+++.+.+.+.+.. .+.. .++.+|++++|+..+...+.++++.+.++|+.++|+
T Consensus 1125 ~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 1203 (1495)
T PLN03232 1125 FTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSV 1203 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999899999999999988766555444333322 2221 256788899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh
Q 000560 1177 ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF 1256 (1421)
Q Consensus 1177 eRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1421)
||+.+|.+.|+|++...++..+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+
T Consensus 1204 eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~ 1283 (1495)
T PLN03232 1204 ERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283 (1495)
T ss_pred HHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999999888865433334456689999999999999999887778999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCc
Q 000560 1257 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1336 (1421)
Q Consensus 1257 rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt 1336 (1421)
|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|+||||
T Consensus 1284 rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt 1363 (1495)
T PLN03232 1284 RIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDA 1363 (1495)
T ss_pred CCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEe
Q 000560 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1416 (1421)
Q Consensus 1337 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~ 1416 (1421)
+++|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+++||||+|||
T Consensus 1364 ~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLS 1443 (1495)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeC
Q 000560 1417 EGKLK 1421 (1421)
Q Consensus 1417 ~G~Iv 1421 (1421)
+|+|+
T Consensus 1444 ~G~iv 1448 (1495)
T PLN03232 1444 SGQVL 1448 (1495)
T ss_pred CCEEE
Confidence 99985
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.1e-200 Score=2032.14 Aligned_cols=1210 Identities=33% Similarity=0.592 Sum_probs=1075.9
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhc-------------------
Q 000560 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (1421)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~------------------- 259 (1421)
.+.+||++||++||++|||+||++++||+++|+.+|||+++++++++.++++|++.|+++.
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999998651
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 000560 260 -----------------------TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1421)
Q Consensus 260 -----------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~ 316 (1421)
.++++|+++++++||+.++..++++++.+++.+++|++++.+++|+.++.. ....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-
Confidence 023689999999999999999999999999999999999999999976543 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHHhHHHHHHHHHHHH
Q 000560 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1421)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~h 393 (1421)
||++++++++..++.+++.+||+|...++|+++|++|++.||+|+|+++.... ++|+++|+|++|++|+.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999987654 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccH
Q 000560 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1421)
Q Consensus 394 ~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE 473 (1421)
.+|..|+++++++++||.++| +++++|++++++++|++..++++++++++++|+.+|+|++.++|+|+|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1421)
Q Consensus 474 ~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~tF~~~~~~--~~~L~~~~vft~lalf~~l~~pl~~lp~ 551 (1421)
+.|.+++++.|++|++..++..+...+..+.++.+|.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888889999999999999876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCC-CCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEE
Q 000560 552 LISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1421)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~i 628 (1421)
.++.+.++++|++||++||+.+| +++..+.... ......|+++|++|+|+.+ ..+.|+| ||++++|++++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 99999999999999999998776 2221111111 1122379999999999753 3578999 999999999999
Q ss_pred EccCCCChHHHHHHHcCCccCCCCcEEEECCEEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcC
Q 000560 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1421)
Q Consensus 629 vG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~ 708 (1421)
+||||||||||+++|+|+++|.+|++ .++|++|||||+||++++||+|||.||.++++++|++++++|++.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHh--hhcCCcEEEEEcCCccchhcc
Q 000560 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM--GLLSQKTVLYTTHQLEFLDAA 786 (1421)
Q Consensus 709 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~--~~~~~~tvilvtH~~~~l~~~ 786 (1421)
||+|.+|++|.+|||||||||+||||+|++||+|||||||||||+++++++++.++. +.++++|+|+|||++++++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 999999999999999999999999999999999999999999999999999998873 466789999999999999999
Q ss_pred CEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCC--CCC------CCCcccc--c----------Ccc-c--
Q 000560 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPP------QEDKCLS--R----------VPC-Q-- 843 (1421)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~--~----------~~~-~-- 843 (1421)
|+|++|++|+|.++|+++++.+ .+..+.++...+....+.. +.. .+..... . .+. .
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999987 4455555554322110000 000 0000000 0 000 0
Q ss_pred --ccc-hhh-hh----c---cCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHH
Q 000560 844 --MSQ-ITE-ER----F---ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1421)
Q Consensus 844 --~~~-~~~-~~----~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1421)
... ... .+ . ..........+..++|+++.|++++++|+.|+++.+. ..+.+++++.++.+++..++++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00 0 0000000112344567788999999999999998754 4444455556677788899999
Q ss_pred HHHhhccccc----cccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHH
Q 000560 913 WIAWATDEKR----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1421)
Q Consensus 913 wl~~~~~~~~----~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~iln 988 (1421)
|+++|++... ..+...|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+++|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 9999986321 122346778999999999999888888999999999999999999999999999999999999999
Q ss_pred HhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHH
Q 000560 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1421)
Q Consensus 989 R~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~ 1068 (1421)
||++|++.+|..+|..+..++..++.+++.++++++.+|.++++++|+++++++++++|.+++|+++|++.++++|+++|
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~ 1146 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSH 1146 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999888888888888888888999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000560 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLA 1148 (1421)
Q Consensus 1069 ~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 1148 (1421)
+.|+++|+.|||+|++|++|.+++.+..|.++++.+.....++|+..++++++.+++.++..+.+ ...+.+++|.+|++
T Consensus 1147 ~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~ 1225 (1522)
T TIGR00957 1147 FNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLS 1225 (1522)
T ss_pred HHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765554444333 33567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeee
Q 000560 1149 ATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228 (1421)
Q Consensus 1149 l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~i 1228 (1421)
++|++.+...+.++++.+.++|+.++|+||+.+|.+.|+|++...+...++++||..|.|+|+||+|+|+++.++||+||
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~i 1305 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccce
Confidence 99999999999999999999999999999999999988876533334456678999999999999999988777899999
Q ss_pred eEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCC
Q 000560 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ 1308 (1421)
Q Consensus 1229 s~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~ 1308 (1421)
||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+||||+||||+++
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 000560 1309 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1388 (1421)
Q Consensus 1309 ~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~ 1388 (1421)
++|+|||+||++|+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|+
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1389 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1389 ~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+.+++||||+||||++|+++||||+|||+|+|+
T Consensus 1466 ~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1466 TQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999985
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.1e-195 Score=1974.71 Aligned_cols=1209 Identities=27% Similarity=0.469 Sum_probs=1057.5
Q ss_pred CCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHH
Q 000560 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1421)
Q Consensus 201 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (1421)
.+||++||+|||++|||+||++++||+++|+.+|||+|+++++++.++++|++.|+++. .++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998753 245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1421)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~I 357 (1421)
++.++++++.+++.+++|++++.+|+|++.++. .....||+++++++++.++++++.++++|...++|+++|++|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999964332 2222389999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCC---ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000560 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1421)
Q Consensus 358 y~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~ 434 (1421)
|+|+|+++..+. ++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++| +++++|++++++++|++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999986543 789999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1421)
Q Consensus 435 ~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~ 514 (1421)
+++++.++|+++|+++|+|++.++|+|+|||+||+||||+.|.++++++|++|++.+++..+..++..++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000560 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1421)
Q Consensus 515 ~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1421)
++|++|.+.++ ++++++||++++|++++.|+. .+|..+..+.++++|++||++||..+|.++... ......+++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceEE
Confidence 99999988754 789999999999999999985 799999999999999999999999877322111 112336999
Q ss_pred EeeEEEeCCcc--------cc------cC------------CCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCC
Q 000560 594 EAGEYAWDARE--------EN------FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1421)
Q Consensus 594 ~~~~fsw~~~~--------~~------~~------------~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 646 (1421)
+|++|+|+... .. .. ...+.|+| ||++++|++++|+|||||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999996420 00 00 02468999 999999999999999999999999999999
Q ss_pred ccCCCCcEEEECCEEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 647 ~~~~~G~vi~~~g~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
++|++|++ .++|++|||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||.|.+|++|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999997 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l 806 (1421)
|||+||||+|++|++|||||||||||+++++++++.|+.+.++++|+|+|||+++.++.||+|++|++|+|.+.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888877789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhh---h----c-------------cc----------CC-----CCCCC--Cc--------------
Q 000560 807 IADQNSELVRQMKAHR---K----S-------------LD----------QV-----NPPQE--DK-------------- 835 (1421)
Q Consensus 807 ~~~~~~~~~~~~~~~~---~----~-------------~~----------~~-----~~~~~--~~-------------- 835 (1421)
.+ .+..+...+.... + . .+ .. .+..+ ..
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76 3344443332100 0 0 00 00 00000 00
Q ss_pred ---------------c-c--ccCcc-------------------ccc---------chh--------h-----h-h----
Q 000560 836 ---------------C-L--SRVPC-------------------QMS---------QIT--------E-----E-R---- 851 (1421)
Q Consensus 836 ---------------~-~--~~~~~-------------------~~~---------~~~--------~-----~-~---- 851 (1421)
. . ...+. ... +.. . . +
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 0 00000 000 000 0 0 0
Q ss_pred --cc-------------------CCCCC-------------CCCCCCCccchhhcCcchHHHHHHHHHHhhhhhHHHHHH
Q 000560 852 --FA-------------------RPISC-------------GEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1421)
Q Consensus 852 --~~-------------------~~~~~-------------~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~ 897 (1421)
.. +.... .......++|+++.|.++|++|+.|+++.+++.++.+++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 00 00000 000112445677889999999999999876655555556
Q ss_pred HHHHHHHHHHhhhHHHHHhhcccc--------c-c-----------c-cccch-hhhHHHhHhHHHHHHHHHHHHHHHHH
Q 000560 898 LCQVLFQALQMGSNYWIAWATDEK--------R-K-----------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1421)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~~--------~-~-----------~-~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~ 955 (1421)
++.++.+++..+.++|+.+|.+.. + . . ...+| +++|++++.+..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788899999999998775311 0 0 0 11122 45555555556677788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1421)
Q Consensus 956 ~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip 1035 (1421)
.++++++|.+++++++++|++|||++|+|+++|||++|++.+|..+|..+..++..++.+++.++++++.+|.++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 000560 1036 ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1115 (1421)
Q Consensus 1036 ~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1115 (1421)
+++++++++++|.+++|++++++..+++|+++|+.|++.|+.|||+||++++|.+++.+..|.+++.++.....++|+..
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccC-
Q 000560 1116 RINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK- 1194 (1421)
Q Consensus 1116 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~- 1194 (1421)
++++++.+.+..++++.+. ....+++.+|++++|++.+...+.++++.+.++|+.+.|+||+.+|.+.|+|++...+
T Consensus 1114 ~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 9998876654443333222 2235678899999999999999999999999999999999999999998877542111
Q ss_pred -------------CCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC
Q 000560 1195 -------------NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1421)
Q Consensus 1195 -------------~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p 1261 (1421)
...+++.||..|.|+|+||+++|+++.++||+|+||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 123456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCC
Q 000560 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341 (1421)
Q Consensus 1262 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~ 1341 (1421)
.+|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||+|+|+
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1342 G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+.+||||+|||+|+|+
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-185 Score=1880.39 Aligned_cols=1217 Identities=29% Similarity=0.481 Sum_probs=1053.8
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHH----------HHhhcC--------
Q 000560 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEES----------LRKQKT-------- 260 (1421)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~----------w~~~~~-------- 260 (1421)
..+.||++||||.++++.|++|++.+..|..|+.+|+|+-..+.++-++..++.+. |+-.-+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 35679999999999999999999999999999999999999998887665555433 321000
Q ss_pred ---------------------------------C----------------------------------------------
Q 000560 261 ---------------------------------D---------------------------------------------- 261 (1421)
Q Consensus 261 ---------------------------------~---------------------------------------------- 261 (1421)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000560 262 --------------ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1421)
Q Consensus 262 --------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1421)
..+|+|+++++||+.+++.++++++.+++.+++|++++.+++|+++++. .+..|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 0379999999999999999999999999999999999999999976543 333488999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000560 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1421)
Q Consensus 328 ~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~-----~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi 402 (1421)
.++++++.++|+|...+.|+++|++|.+.||+|+++++..+. ++|+++|+|++|++++.+++.++|.+|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987432 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHH
Q 000560 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1421)
Q Consensus 403 ~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~ 482 (1421)
++++++||+.+| +++++|++++++++|++.++++++.++++++|+++|+|++.++|+++|||+||+||||+.|.++|++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1421)
Q Consensus 483 ~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS 562 (1421)
.|++|++.+++..+..++..++.+++|.++++++|++|++.|++||++++||++++|++++.|+.++|..++.+.++++|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC-CCCC----CC-----CCCC-----------------------------------------------
Q 000560 563 LYRIQEFIKEDNQ-KKPI----TE-----PTSK----------------------------------------------- 585 (1421)
Q Consensus 563 ~~RI~~fL~~~e~-~~~~----~~-----~~~~----------------------------------------------- 585 (1421)
++||++||..+|. .+.+ +. ....
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999987661 1100 00 0000
Q ss_pred --CCCccEEEEeeEEEeCCccc--------------------c-----------c-CCCcccccC-ceEeeCCcEEEEEc
Q 000560 586 --ASDVAIDIEAGEYAWDAREE--------------------N-----------F-KKPTIKLTD-KMKIMKGSKVAVCG 630 (1421)
Q Consensus 586 --~~~~~I~i~~~~fsw~~~~~--------------------~-----------~-~~~~~~L~~-nl~i~~G~~~~ivG 630 (1421)
.....+.++|++|+|+.... . + ..+++.|+| ||++++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 00123556666666642110 0 0 013457999 99999999999999
Q ss_pred cCCCChHHHHHHHcCCccCCCCcEEEECCEEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCC
Q 000560 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1421)
Q Consensus 631 ~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd 710 (1421)
|||||||||+++|+|+++|++|++ .+++++|||||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999997 7889999999999999999999999999888889999999999999999999999
Q ss_pred CccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEE
Q 000560 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1421)
Q Consensus 711 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~ 790 (1421)
.|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+.++|+|+|++||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999988877778999999999999999999999
Q ss_pred EEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCC--CCCCCcccccCc---ccccc--hhhhhccC----CCCCC
Q 000560 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN--PPQEDKCLSRVP---CQMSQ--ITEERFAR----PISCG 859 (1421)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~--~~~~~~~~----~~~~~ 859 (1421)
+|++|++.++|+++++.+ .+ .+..+........+..+ ...+.......+ ..... .......+ .....
T Consensus 853 ~l~~G~i~~~G~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMR-TS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHh-Ch-HHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999986 22 34333322111100000 000000000000 00000 00000000 00011
Q ss_pred CCCCCCccchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhH
Q 000560 860 EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1421)
Q Consensus 860 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~ 939 (1421)
...++.++|+++.|.++|++|+.|++..++...+.+++++.++.+++..++++|+++|++.....+...|+++|+++.++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 12345567788889999999999999987665555555555677788889999999988644334456788899988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 000560 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1421)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~ 1019 (1421)
..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887888887788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 000560 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1099 (1421)
Q Consensus 1020 ~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1099 (1421)
+++++.+|.++++++|+.++++.++++|.+.+|+++|....+++|++++++|++.|+.|||+|+.++.|.+++.+..|.+
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999998877778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000560 1100 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISV 1176 (1421)
Q Consensus 1100 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sv 1176 (1421)
.+..+.....++|+..+++++++++.++++++.+ ....+..++|.++++++|+..+...+.++++.+.++|+.+.|+
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776554433322 2234456789999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCccc-----------------------cCCCCCC---CCCCCCCcEEEEeeeeeeCCCCCcceeeee
Q 000560 1177 ERILQFTN-IPSEAPLV-----------------------IKNSRPS---PEWPSSGKIELENLLVQYNPTLPMVLKGIT 1229 (1421)
Q Consensus 1177 eRi~~~~~-~~~E~~~~-----------------------~~~~~~~---~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is 1229 (1421)
||+.+|.+ .|+|+... .+...++ +.||..|.|+|+||+|+|+++.++||+|||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vs 1330 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecce
Confidence 99999996 44432110 0011122 245677999999999999988788999999
Q ss_pred EEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCC
Q 000560 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309 (1421)
Q Consensus 1230 ~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~ 1309 (1421)
|+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+||+||||+||||++++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEA 1410 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEeccCCCCCHHHHHHHHHHHH
Q 000560 1310 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK-KRILVLDEATASIDTATDNVIQQTIR 1388 (1421)
Q Consensus 1310 sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~-~~ILiLDEaTsslD~~Td~~Iq~~I~ 1388 (1421)
+|+|||+||++|+++++|.++|+||||.++|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|+
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred HHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1389 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1389 ~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+.+++||||+||||++|+.+||||+|||+|+|+
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999985
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-137 Score=1292.90 Aligned_cols=1058 Identities=21% Similarity=0.266 Sum_probs=802.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 000560 333 LTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALV 407 (1421)
Q Consensus 333 l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~~-----~~h~~w~~plqi~~al~ 407 (1421)
+....|.+.+.|...|+|.....+|.||-....... ++|++++-|+.|+++|.|++. ++|.+-....-++++++
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678899999999999999999999887665544 349999999999999999863 34444333222333332
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHH
Q 000560 408 ILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIE 487 (1421)
Q Consensus 408 lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~E 487 (1421)
. +|..+++++.+..++......+++.+.+.-.+.+++-.+--+...|.+.+||+|-.|+-|+.-.++-.+.
T Consensus 169 ~-----~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~---- 239 (1228)
T KOG0055|consen 169 Y-----GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKA---- 239 (1228)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHH----
Confidence 2 6677888888888888888888888888888888888888899999999999999999998766655443
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 488 RDSLKKYLYTCSAIAFLFW------ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561 (1421)
Q Consensus 488 l~~l~~~~~~~~~~~~~~~------~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~v 561 (1421)
++..+|+...+++...+.. .-......++||..+++.+..+++++|+.+...-+-...+.+..+.++.+.+|++
T Consensus 240 L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~ 319 (1228)
T KOG0055|consen 240 LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARA 319 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhcccc
Confidence 3333333333332222111 1122334567777777777899999999987777777888888889999999999
Q ss_pred HHHHHHHHhcccCCCCC--CCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHH
Q 000560 562 SLYRIQEFIKEDNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSS 638 (1421)
Q Consensus 562 S~~RI~~fL~~~e~~~~--~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKST 638 (1421)
+..+|.+-++...+.++ .+.......+..|+++|+.|+|+.+ ++.++|++ ||+|++|+.+|+|||+||||||
T Consensus 320 aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST 394 (1228)
T KOG0055|consen 320 AAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKST 394 (1228)
T ss_pred chHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHH
Confidence 99999999987662222 1222333456789999999999988 56789999 9999999999999999999999
Q ss_pred HHHHHcCCccCCCCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHH
Q 000560 639 LLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIE 704 (1421)
Q Consensus 639 Ll~~ilG~~~~~~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~ 704 (1421)
++++|.|.++|++|+| .++| +||.|.|+|.+|++||+|||.||+|- .++..+++.+.....+.+.
T Consensus 395 ~i~LL~RfydP~~G~V-~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 395 LIQLLARFYDPTSGEV-LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred HHHHHHHhcCCCCceE-EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 9999999999999997 7776 47999999999999999999999964 4566666666667778899
Q ss_pred hhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchh
Q 000560 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1421)
Q Consensus 705 ~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 784 (1421)
.+|+|.+|.+||+|..|||||||||||||||.+||+||||||||||||++. +++.++.+....+|+|.|+|+|+++.++
T Consensus 474 ~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIr 552 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIR 552 (1228)
T ss_pred hhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhh
Confidence 999999999999999999999999999999999999999999999999986 5666788888899999999999999999
Q ss_pred ccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCC-CCCCCccc----ccCcccccchhhh---h--c--
Q 000560 785 AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDKCL----SRVPCQMSQITEE---R--F-- 852 (1421)
Q Consensus 785 ~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~---~--~-- 852 (1421)
+||+|++|++|+|++.|+++||.+. +..+.+++..++......+ +.+++... +...........+ + .
T Consensus 553 naD~I~v~~~G~IvE~G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~ 631 (1228)
T KOG0055|consen 553 NADKIAVMEEGKIVEQGTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLS 631 (1228)
T ss_pred ccCEEEEEECCEEEEecCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccc
Confidence 9999999999999999999999994 4888888876643321110 00000000 0000000000000 0 0
Q ss_pred cCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHH----HHhhhHHHHHhhc-cccc--cc
Q 000560 853 ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYK-GALVPVILLCQVLFQA----LQMGSNYWIAWAT-DEKR--KV 924 (1421)
Q Consensus 853 ~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~wl~~~~-~~~~--~~ 924 (1421)
.++..+...... .+++ -.+ .+++-++...+ |.++.+-+++.++..+ +.......+.... ++.. ..
T Consensus 632 ~~~~~e~~~~~~-~~~~---~~~---s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~ 704 (1228)
T KOG0055|consen 632 VKPEGEDPEEPV-SEED---EKV---SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKR 704 (1228)
T ss_pred cccccccccccc-cccc---ccc---cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 000000000000 1111 112 23333333332 2222222222222222 2222222222111 1111 11
Q ss_pred cccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--cChhhHHHHhhchhhHhhhhhH
Q 000560 925 SREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIP 1002 (1421)
Q Consensus 925 ~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~--tp~G~ilnR~s~D~~~vd~~l~ 1002 (1421)
....|...|+++++++.++.++..+++.+.|.+..+++|.++|+++++.++.|||. +. |++.+|+.+|...+...+.
T Consensus 705 ~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~ 783 (1228)
T KOG0055|consen 705 EVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVG 783 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHH
Confidence 22348889999999999999999999999999999999999999999999999996 45 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHh
Q 000560 1003 YRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1082 (1421)
Q Consensus 1003 ~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf 1082 (1421)
..+..++.++..++..+++.++++|.+.++++.+.++.+.....+.+......+.+............|++.+++||++|
T Consensus 784 ~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 784 DRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999988766555444433333333333333333444445567889999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH---HHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 000560 1083 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF---FLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVL 1158 (1421)
Q Consensus 1083 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~---~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~ 1158 (1421)
+.|++|.+.+.+.++...+..+... .|-++...+-.++++ +++..+ ......+..++..+-..+.-...-...
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~ 940 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMA 940 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999998888776655432 233332222222222 222222 233445666665443322222222233
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcE
Q 000560 1159 QAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKK 1237 (1421)
Q Consensus 1159 ~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Gek 1237 (1421)
.........+.-+...|+.++.+..+-+++-+...+... ...+.+|+|+|+||+|+|+.. ..+||+|+|++|++|+.
T Consensus 941 ~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~--~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 941 LGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGG--KLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--ccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCE
Confidence 344455667777888899999999876553221111111 111358999999999999632 12699999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHH
Q 000560 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWE 1316 (1421)
Q Consensus 1238 vgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~ 1316 (1421)
+|+||||||||||++.+|.|+|+|.+|.|.|||.||++++++.||+++++|.|||.||++||||||.++ .+.+.+||.+
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~ 1098 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIE 1098 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 4579999999
Q ss_pred HHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEE
Q 000560 1317 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTV 1396 (1421)
Q Consensus 1317 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TV 1396 (1421)
|++.++.++||.++|+||||.|||.|.+||||||||+|||||++||||||+||||||+||.++|+.+|++|++...++|.
T Consensus 1099 Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~ 1178 (1228)
T KOG0055|consen 1099 AAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTT 1178 (1228)
T ss_pred HHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhccCEEEEEeCCeeC
Q 000560 1397 ITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1397 I~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|+|||||+||++||.|.|+++|+|+
T Consensus 1179 IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1179 IVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred EEEecchhhhhcCCEEEEEECCEEE
Confidence 9999999999999999999999985
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.3e-127 Score=1294.53 Aligned_cols=1138 Identities=17% Similarity=0.173 Sum_probs=813.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1421)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1421)
++...+.+++.++++.++.++..++..+.|+++..+++-+...+. ... ++..+++..++..++...+.+...++
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VND----IIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567778888888888888888899999999986642221 111 11122222222333333333444555
Q ss_pred HHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000560 346 GIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1421)
Q Consensus 346 g~riR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1421)
+.++...+...+|+|.++++. .....|++.|.++.|++.+.+++. .+-.+...++.++.++++++. +.|..+++.
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 555555555666666666552 123779999999999999988763 355555556666666555443 444556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1421)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~ 501 (1421)
++++.+++.+...+.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....++.
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777788888888888888888999999999999999999999999988888765444344333333333332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 502 AFLFWASP--TLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1421)
Q Consensus 502 ~~~~~~~p--~~v~~~tF~~~~~~~~--------~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1421)
..+..... ..+.+++||.+.+..+ .++++.+++.+....+...++..+...+..+.++.+|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222211 2233456777766643 5788888876655544455566666678899999999999999998
Q ss_pred ccCCCC-CCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC
Q 000560 572 EDNQKK-PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1421)
Q Consensus 572 ~~e~~~-~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 649 (1421)
.++..+ ..+..... ....|+++|++|+|+.. +..++|+| ||++++||+++|+||||||||||+++|+|.++|
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 364 RKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred CCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 765211 11111111 12369999999999854 23578999 999999999999999999999999999999999
Q ss_pred CCCcEEEE-CC-------------EEEEEcCCCcCCCCcHHHHhccCCC-------------------------------
Q 000560 650 ISGAAIKV-HG-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------- 684 (1421)
Q Consensus 650 ~~G~vi~~-~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~------------------------------- 684 (1421)
++|++ .+ +| .+|||+|+|.+|++||+|||.+|..
T Consensus 438 ~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1466)
T PTZ00265 438 TEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRA 516 (1466)
T ss_pred CCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccc
Confidence 99997 66 33 3799999999999999999999742
Q ss_pred ---------------------------CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhcc
Q 000560 685 ---------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1421)
Q Consensus 685 ---------------------------~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1421)
..++...++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+||||+++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~ 596 (1466)
T PTZ00265 517 KCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR 596 (1466)
T ss_pred cccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhc
Confidence 12244556667778888899999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEeCC--------------------
Q 000560 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG-------------------- 795 (1421)
Q Consensus 738 ~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G-------------------- 795 (1421)
+|+|+|||||||+||+++.+.+.+ .+..+. +|+|+|+|||+++.+..||+|++|++|
T Consensus 597 ~P~ILlLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~ 675 (1466)
T PTZ00265 597 NPKILILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNK 675 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccc
Confidence 999999999999999999887765 455443 489999999999999889999999986
Q ss_pred ---------------------------EEEEecCchhhhhhhhhHHHHHHHHhhhcccCCC-C-CCCCc----cc-c-cC
Q 000560 796 ---------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P-PQEDK----CL-S-RV 840 (1421)
Q Consensus 796 ---------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~-~-~~ 840 (1421)
+|+++|+++|+++..+..+..++..+........ . .+... .. . ..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1466)
T PTZ00265 676 ENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSE 755 (1466)
T ss_pred ccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccc
Confidence 5999999999987446677777654422111000 0 00000 00 0 00
Q ss_pred cc---cc-cch--hhhh-ccCCCCC----CCCCCCCcc-c-----h----hhcCcchHHHHHHHHHHhhhhhHHHHHHHH
Q 000560 841 PC---QM-SQI--TEER-FARPISC----GEFSGRSQD-E-----D----TELGRVKWTVYSAFITLVYKGALVPVILLC 899 (1421)
Q Consensus 841 ~~---~~-~~~--~~~~-~~~~~~~----~~~~~~~~~-e-----~----~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~ 899 (1421)
+. .. ... .... ....... ....+...+ + + .......+..++.++.......+ +.+++
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 833 (1466)
T PTZ00265 756 RGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALS 833 (1466)
T ss_pred cccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHH
Confidence 00 00 000 0000 0000000 000000000 0 0 00000112223344433222211 11122
Q ss_pred HHHHHHHHhhhHHHHHhhccc---cc--cccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000560 900 QVLFQALQMGSNYWIAWATDE---KR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1421)
Q Consensus 900 ~~~~~~~~~~~~~wl~~~~~~---~~--~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 974 (1421)
.++..++....++.++.+.+. .. ......+..++++++++..++.+++.++....+.+...+++.++++++++.|
T Consensus 834 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~ 913 (1466)
T PTZ00265 834 ILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQE 913 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222222333333333332210 00 1112245566677777788888999999999999999999999999999999
Q ss_pred cccccc--cChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000560 975 ISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT--T 1050 (1421)
Q Consensus 975 ~sffd~--tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~--~ 1050 (1421)
++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.+.++++|+.++.........+ .
T Consensus 914 ~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 993 (1466)
T PTZ00265 914 ISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTA 993 (1466)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 889999999999999999999988999999999999999999999998887766654433222111111 1
Q ss_pred HHHHHHH-------------HhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 000560 1051 ARELARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRI 1117 (1421)
Q Consensus 1051 sr~l~rl-------------~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1117 (1421)
.++.++. +.+..+.....+.|++.|+.|||+|+.|+++.+++.+..+...+..........++....
T Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1466)
T PTZ00265 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS 1073 (1466)
T ss_pred HHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121111 223345678899999999999999999999999999988887776665544444444444
Q ss_pred HHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCC
Q 000560 1118 NLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNS 1196 (1421)
Q Consensus 1118 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1196 (1421)
+++..+..+++.++ ......+.++.+.+..++.+.+........+...+.++++...+.+|+.++++.+++.+......
T Consensus 1074 ~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~ 1153 (1466)
T PTZ00265 1074 QSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGG 1153 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcc
Confidence 44433333332222 23344677777765554444333333445566778888999999999999998655432111111
Q ss_pred CC-CCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-------------
Q 000560 1197 RP-SPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP------------- 1261 (1421)
Q Consensus 1197 ~~-~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p------------- 1261 (1421)
.+ ++..+..|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1154 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1154 IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred cccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 11 0112346889999999999742 23699999999999999999999999999999999999999
Q ss_pred -----------------------------------------CccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHh
Q 000560 1262 -----------------------------------------SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1300 (1421)
Q Consensus 1262 -----------------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR 1300 (1421)
++|+|+|||+||+++++++||++|+||||||+||+||||
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHH
Confidence 699999999999999999999999999999999999999
Q ss_pred hhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHH
Q 000560 1301 TNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1379 (1421)
Q Consensus 1301 ~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~T 1379 (1421)
|||..+ ++++|+||++|++.++++|||.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++|
T Consensus 1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 999987 4689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeC----Cee
Q 000560 1380 DNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDE----GKL 1420 (1421)
Q Consensus 1380 d~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~----G~I 1420 (1421)
|+.|+++|++.. +++|+|+||||++++.+||+|+||++ |++
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 999999999873 68999999999999999999999999 884
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-85 Score=784.30 Aligned_cols=540 Identities=23% Similarity=0.330 Sum_probs=461.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcc-----ccccccccchhhhHHHhHhHHHHHHHHHHHH
Q 000560 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATD-----EKRKVSREQLIGVFIFLSGGSSFFILGRAVL 950 (1421)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~-----~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~ 950 (1421)
.+...+.|.+..+++.. ...++.++.....+..++++...++ ++..........+..++.++++++..+|.++
T Consensus 134 ~~~rl~~l~~~~~~~l~--~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLV--AAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHH--HHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665433322 2223333444445566665543322 1111223345566677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVF 1030 (1421)
Q Consensus 951 ~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~ 1030 (1421)
+...+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...+.+.++.++.++.|+..+|.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000560 1031 PLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110 (1421)
Q Consensus 1031 ~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1110 (1421)
.+.+..+++...+.++|-+..|++.+..+++-+...+...|.+++++|+|+|+.|++..+++.+.++...+.........
T Consensus 292 lv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~ 371 (716)
T KOG0058|consen 292 LVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAY 371 (716)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888888888888899999999999999999999999999999999999999999998888888877666554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCC
Q 000560 1111 EWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1189 (1421)
Q Consensus 1111 ~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1189 (1421)
--+....++.+++....++.. ......+.+++|.....+.|...+...+.++...+.++.+.+.|.+|+.||++.++.-
T Consensus 372 ~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i 451 (716)
T KOG0058|consen 372 GIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRI 451 (716)
T ss_pred hHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCC
Confidence 333334445555444333333 3445678899999999999999999999999999999999999999999999876554
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEE
Q 000560 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1421)
Q Consensus 1190 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~I 1268 (1421)
+.. ....|. +-+|.|+|+||+|.|+.. ..+||||+||+|+|||.||+||||||||||++++|.|+|+|++|+|++
T Consensus 452 ~~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 452 PLT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 321 112223 568999999999999643 235999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1269 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
||+||++++.+.||++||+|.|||+||+|||||||.+. ...+||||.+|+++++.+|||.++|+|+||.|||.|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999875 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+||||++||+.+|+|+|+|+|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-78 Score=760.88 Aligned_cols=524 Identities=26% Similarity=0.374 Sum_probs=466.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccc-ccccc---cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 894 PVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1421)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 969 (1421)
.-+++..++.+++.+++++...+..|.- +..+. ......+++.++...++.++|++++...+.+....+-.+++++
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~h 236 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH 236 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455566777888888888888777521 22222 2223444555667788999999999999999999999999999
Q ss_pred HhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1421)
Q Consensus 970 ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~ 1049 (1421)
+++.|++||+++++|++++|+. |++.|...+...+...+..++.++..+++|++++|+++++.+..++++..+.-+..+
T Consensus 237 ll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 237 LLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 888899999999999999999999999999999999999888877777777667777
Q ss_pred HHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000560 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL 1129 (1421)
Q Consensus 1050 ~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~ 1129 (1421)
..|+..+...+..+...++..|++.|+.|||+.+.|.++..++.+..+++.+..+.......|......++..+....++
T Consensus 316 ~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL 395 (709)
T COG2274 316 LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLIL 395 (709)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888889999999999999999999999999999999999999999988888888888888877766666
Q ss_pred HH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcE
Q 000560 1130 II-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1421)
Q Consensus 1130 ~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1208 (1421)
++ ......+.++.|..-.+.+..-.++..+..++..+.+++....+.+|+.+..+.|+|.+. +..+...|+..|+|
T Consensus 396 ~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I 472 (709)
T COG2274 396 WFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEI 472 (709)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceE
Confidence 55 334456778888777777777788888999999999999999999999999999888642 22244556778999
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++|
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1289 PQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1289 pQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
|||++||+||||||+...+ +.+|||+++|++.++++|||.++|.||||++||+|.|||||||||++|||||++||+||+
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl 632 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL 632 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999998764 578899999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||||+||++||+.|.+.|.+..++||+|+||||++|+++||||+|||+|||+
T Consensus 633 LDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 633 LDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred EeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999999999985
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9e-75 Score=733.52 Aligned_cols=519 Identities=27% Similarity=0.387 Sum_probs=433.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhhccccc-c-ccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000560 897 LLCQVLFQALQMGSNYWIAWATDEKR-K-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1421)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~~-~-~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 974 (1421)
.++.++...+....++++.+..+.-. . .....++..++++.++..++.++..++....+.+...+++.++++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444555666666666665443221 1 112234444555555666677777777778889999999999999999999
Q ss_pred cccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 975 ISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAREL 1054 (1421)
Q Consensus 975 ~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l 1054 (1421)
+++|+++++|++++|+++|++.++..+......+..+++.+++.+++++..+|.+.++++...+++.+...++.+..++.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888866666678888999999999999988887777777777777777667888
Q ss_pred HHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HH
Q 000560 1055 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LV 1133 (1421)
Q Consensus 1055 ~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~ 1133 (1421)
.+......+.+.+.+.|+++|.++||+|+.++...+++.+..+...+...........+.....++..+....+..+ ..
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999887777777666666554444444444433444444333332222 22
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEee
Q 000560 1134 TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213 (1421)
Q Consensus 1134 ~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nv 1213 (1421)
....+.++.|.....+.|...+...+..+...+..++....+.||+.++.+.+++... ... +..+..|.|+|+||
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~v 334 (567)
T COG1132 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFENV 334 (567)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEEE
Confidence 2345567888888888999988888999999999999999999999999987554211 111 13445688999999
Q ss_pred eeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCc
Q 000560 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1421)
Q Consensus 1214 s~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1293 (1421)
+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.|||+||+++++++||++|++|||||+
T Consensus 335 sf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 335 SFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred EEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 9999863 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHhhhcCCCCC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccC
Q 000560 1294 LFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1421)
Q Consensus 1294 LF~gTIR~NLdp~~~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaT 1372 (1421)
||+||||+||+++.+ ++|||+++|+++++++|++.++|+|+||.+||+|.+||||||||+|||||++|+|+||||||||
T Consensus 414 LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT 493 (567)
T COG1132 414 LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493 (567)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 999999999999865 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1373 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1373 sslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|++|++||+.|++.+++..+++|+|+||||++|+.+||+|+|||+|+|+
T Consensus 494 SalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~ 542 (567)
T COG1132 494 SALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542 (567)
T ss_pred cccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEE
Confidence 9999999999999999888899999999999999999999999999974
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.1e-74 Score=729.27 Aligned_cols=537 Identities=18% Similarity=0.222 Sum_probs=427.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc--cccc---ccchhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+.++.|++..++.. .+.+++.++...+....++.+.+..+.- +..+ ...++..++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666543332 2333444555556666666666554321 1111 112233344445556667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
..+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..++.+++.+++.+++++.++|.+.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888899999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
++.++++..++...+.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777777777788889999999999999999999999999999988888877766555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 000560 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA---------GLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~ 1183 (1421)
......++..+...+++++......+.++.|.. -.++.+...+...+..+...+.++.....+.+|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332222211111111233333321 11223444455666677777888888999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000560 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1421)
Q Consensus 1184 ~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~ 1263 (1421)
+.|++.+. +...+. ..+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|.|++ |++
T Consensus 329 ~~~~~~~~--~~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQ--QGEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccC--CCcccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 87654321 111111 11234679999999887654 56999999999999999999999999999999999999 999
Q ss_pred cEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000560 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1421)
Q Consensus 1264 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1421)
|+|.+||+|+++++.+++|++|+||||||+||+|||||||... ++++|||+++|+++|++++++.++|+|+||.+||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999999999999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
.|||||||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999999999985
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-73 Score=738.18 Aligned_cols=533 Identities=21% Similarity=0.288 Sum_probs=441.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccc-ccc---ccchhhhHHHhHhHHHHHHHHHHHHHHHH
Q 000560 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATI 954 (1421)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 954 (1421)
.++.|++..++ .+...+++.++...+.+..++++....+.-. ..+ ....+..++++.++..++..++..+....
T Consensus 151 ~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554322 2333444555666677777777765554211 111 12234445555666777888888899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFL 1034 (1421)
Q Consensus 955 ~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~i 1034 (1421)
+.+...+++.++++++++.|++||++++.|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhH---hH
Q 000560 1035 VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT---ME 1111 (1421)
Q Consensus 1035 p~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~---~~ 1111 (1421)
..+++.+++.+.+.+..++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+........ ..
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766776777777777777777777788888999999999999999999999999999988888776655443322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
|....+..+..+++.. +.......+.+++|.+..++.|...+...+..+...+.++.+...+.+|+.++.+.+++.+.
T Consensus 389 ~~~~~~~~~~~~~il~--~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLY--YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3333222222222111 12223446788999888888999999999999999999999999999999999987655321
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1270 (1421)
. . ....++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||
T Consensus 467 ~---~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T---G-TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C---C-CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 1 11123457889999999999753 35799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
+|+++++.+++|++|++|||||++|+|||||||... ++.+|+++++++++++++++++++|+|+||.+||+|.+|||||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999865 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||+|||||++++|+|||||||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++|+|+
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999 3345799999999999999999999999999985
No 14
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9e-73 Score=730.01 Aligned_cols=519 Identities=21% Similarity=0.255 Sum_probs=436.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhcccc-ccccc---cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 895 VILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1421)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~l 970 (1421)
.++++.++...+.+..++.+....+.- +..+. ..+...++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777666554321 11111 12234455555666778888899999999999999999999999
Q ss_pred hcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1421)
Q Consensus 971 l~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~ 1050 (1421)
++.|++||++.++|++++|++ |++.+...+...+...+..++.+++.+++++.++|++.++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7888988888877777777777788888899999998887776666555555555555
Q ss_pred HHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000560 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1421)
Q Consensus 1051 sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~ 1130 (1421)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666778899999999999999999999999999999999988888887777777777666655544433333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEE
Q 000560 1131 I-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1421)
Q Consensus 1131 ~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1209 (1421)
+ ......+.++.|.+..+.++...+...+..+...+.++.....+.+|+.++.+.|+|.+. ...+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEE
Confidence 3 223346778888777777777778888888888999999999999999999987665431 1111 123457899
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEc
Q 000560 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1421)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1289 (1421)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999866677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1290 QDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1290 Qdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
|||.+|+|||||||...++.+|+++++|++.+++++++.++|+|+||++||+|.+||||||||++||||++++|+||+||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987668999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||+||++|++.|++.|++. ++|+|+||||++++.+||+|+|||+|+|+
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 999999999999999999986 68999999999999999999999999984
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-72 Score=732.46 Aligned_cols=540 Identities=21% Similarity=0.257 Sum_probs=448.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc-ccccc---cchhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+..++.+++..++. ...++++.++..++.++.++++....+.- +.... ..+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGA--LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666644322 22333444555666666677766554321 11111 12333444455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
..+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.+++++.++|++.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 57888888888888888999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
.+.++++++++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777888999999999999999999999999999998888887777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
......++..+...++.++ ......+.++.|.+..+.++...+...+..+...+.++.....+.+|+.++.+.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6666666555443333332 233456788888888888888888888888899999999999999999999988766532
Q ss_pred ccCC--C-CCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEE
Q 000560 1192 VIKN--S-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1421)
Q Consensus 1192 ~~~~--~-~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~I 1268 (1421)
.... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+++|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456889999999999876677999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1269 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
||+|+++++.+++|++++||||||.+|+|||||||..++ +++|+++++|++++++++++.++|+|+||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||||++||||++++|+||+||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999984
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.3e-72 Score=730.96 Aligned_cols=537 Identities=21% Similarity=0.266 Sum_probs=440.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc-ccccc---cchhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+..++.|++...+. +..++++.++..++.++.++++....+.- +.... ..+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666654332 23344445566667777788877666421 11111 11223333444556677788888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
..+.+...+++.++++++++.|++||++.++|++++|++ |.+.+...+...+...+..++.+++.++++++.+|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888877777667777777777777888888899998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
++..+++++.+...+.+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666677777777888888888889999999999999999999999999999888888777766655444444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1113 LCLRINLLFNFAFFLVL-IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
......++..+...++. +.......+.++.|.+..+..+...+...+..+...+.++.....+++|+.++.+.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 33333333322222222 22233447788888888888888888888888899999999999999999999988776532
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~ 1271 (1421)
. ....+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234457899999999999744 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEccCCccccccHhhhcCCC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
|+++++.+++|++++||||||++|+|||||||... ++++|++++++++.+++++++.++|+||||.++|+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999976 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||++||||++++|+|||||||||+||++|++.|++.|++. +++|+|+||||++++..||+|+||++|+++
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999974 789999999999999999999999999974
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.5e-72 Score=713.90 Aligned_cols=519 Identities=24% Similarity=0.361 Sum_probs=425.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhcccc-ccccc-cch----hhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 896 ILLCQVLFQALQMGSNYWIAWATDEK-RKVSR-EQL----IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1421)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~-~~~----l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 969 (1421)
.+++.++...+....++++.+..+.. +..+. ... +.+++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666667777777655421 11111 111 1223333445556677778888889999999999999999
Q ss_pred HhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1421)
Q Consensus 970 ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~ 1049 (1421)
+++.|+++|+..+.|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.++++..+++.+.+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888899999998876655444444444444555
Q ss_pred HHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHH
Q 000560 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL-CLRINLLFNFAFFLV 1128 (1421)
Q Consensus 1050 ~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~ 1128 (1421)
..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666677888999999999999999999999999998887777666555443333332 222333333222222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcE
Q 000560 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1421)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1208 (1421)
.+.......+.++.|....+..|...+...+..+...+.++++...+.+|+.++.+.+++++. .. ..++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 122222346778888888888888888899999999999999999999999999876544221 11 122345789
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+|+||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000560 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1421)
Q Consensus 1289 pQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1368 (1421)
||||.+|+||||+||.++++++|++++++++++|++++++++|+|+||.++|+|.+||||||||++|||||+++|+||+|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999988899999999999999999999999999974
No 18
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.1e-72 Score=722.59 Aligned_cols=538 Identities=21% Similarity=0.248 Sum_probs=443.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc-cccccc---chhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSRE---QLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~---~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+..++.+++..++. +..++++.++..++..+.++.+....+.. +..+.. .+...++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPL--YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666544332 23344444556666677777776555421 111111 1222333344556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
..+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+...+...+...+..++.++..++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999988888778888888888888888999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
.+..+++++.+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666667777777777778889999999999999999999999999999998888877777666555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
......++..+...++.++ ......+.+++|....+.++...+...+..+...+.++.....+.+|+.++.+.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 5545554444333222222 233446788888888888888888888888899999999999999999999988766432
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~ 1271 (1421)
. ....+..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112346789999999999766667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
|+++++++++|+++++|||||++|+|||||||...+ +++|+|++++++++++++++.++|+|+||.++|+|.|||||||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999999875 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||++|+|+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~ 678 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999988999999999999999999999999999985
No 19
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.3e-72 Score=702.71 Aligned_cols=505 Identities=20% Similarity=0.250 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhccccccccccchhh-h---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000560 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIG-V---FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1421)
Q Consensus 896 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~-v---y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 971 (1421)
.+++.++..++.+..++.+++..+..........+. . .+++.++..++.++..++....+.+...+++.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445556666666777766654211111111111 1 112334455666677777788889999999999999999
Q ss_pred cCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000560 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITT 1050 (1421)
Q Consensus 972 ~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~-~~~y~~~ 1050 (1421)
+.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++..++++.++ ..++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999888776655444333 3444555
Q ss_pred HHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000560 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1421)
Q Consensus 1051 sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~ 1130 (1421)
.++..+...+..+.+.+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677889999999999999999999999999999999888887776666555555444444444433333222
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEE
Q 000560 1131 I-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1421)
Q Consensus 1131 ~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1209 (1421)
+ ......|.++.|.....+.|...+...+..+...+.++.+...+.+|+.++.+.++|.+.. +...+...+|..+.|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEE
Confidence 2 2234467788888888888888888888888888889999999999999999876653211 1111111234567899
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEc
Q 000560 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1421)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1289 (1421)
|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++|||
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 999999997654 599999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000560 1290 QDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1421)
Q Consensus 1290 Qdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1368 (1421)
|||++|+|||||||..+ ++.+||++++|+++++++|++.++|+|+||++||+|.+||||||||+|||||++++|+||||
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliL 494 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 494 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999985 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCh
Q 000560 1369 DEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1421)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl 1403 (1421)
|||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999988999999999995
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.8e-71 Score=702.90 Aligned_cols=482 Identities=22% Similarity=0.292 Sum_probs=424.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHH
Q 000560 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014 (1421)
Q Consensus 935 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~ 1014 (1421)
++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..++.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHH
Q 000560 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1421)
Q Consensus 1015 ~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1421)
+++.+++++..+|+++++++.++++.+++..+..+..++..+......+...+++.|.++|+.+||+|+.++.+.+++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 99999999999999887777666666666666666667777777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000560 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1421)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~ 1173 (1421)
..+...+..........|.....+++..+...++..+ ......+.+++|....+.++...+...+..+...+.++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777777777776776665544333332 233456788999988888888888888899999999999999
Q ss_pred hHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH
Q 000560 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1421)
Q Consensus 1174 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~ 1253 (1421)
.+.+|+.++.+.++|.+. +.. ...|..+.|+++||+|+|+++.+++|+|+||+|++||++||||+||||||||++
T Consensus 313 ~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 313 AACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999987655321 111 112345689999999999876567999999999999999999999999999999
Q ss_pred HHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC--CCCCHHHHHHHHHHcCcHHHHHhcc
Q 000560 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQ 1331 (1421)
Q Consensus 1254 ~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp 1331 (1421)
+|+|+++|++|+|.+||+|+++++.+++|++++||||||++|+||||+||... ++++|++++++++++++++++.++|
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999864 3489999999999999999999999
Q ss_pred cccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCE
Q 000560 1332 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1411 (1421)
Q Consensus 1332 ~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~Dr 1411 (1421)
+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++..||+
T Consensus 468 ~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCeeC
Q 000560 1412 VLVLDEGKLK 1421 (1421)
Q Consensus 1412 IlvL~~G~Iv 1421 (1421)
|++||+|+|+
T Consensus 548 Ii~l~~g~i~ 557 (582)
T PRK11176 548 ILVVEDGEIV 557 (582)
T ss_pred EEEEECCEEE
Confidence 9999999974
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.8e-71 Score=696.91 Aligned_cols=535 Identities=20% Similarity=0.237 Sum_probs=427.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc---ccc---cccc--hhhhHHHhHhHHHHHHHHHHHHH
Q 000560 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKV---SREQ--LIGVFIFLSGGSSFFILGRAVLL 951 (1421)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~---~~~~--~l~vy~~l~~~~~~~~~~~~~~~ 951 (1421)
++.|++...+.. .+.+++.++..++.++.++.+.|..+.. ... .... .+..+.+++++..++.++..++.
T Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 7 FLKLYKRHWFML--SLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555433222 2333344455555566666666655421 110 0011 11223334455566677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
...+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..++.+++.+++.++++++.+|++.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000560 1032 LFLVILGIS-IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110 (1421)
Q Consensus 1032 v~ip~~~~~-~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1110 (1421)
+++..+++. ..+..++.+..++..+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..++..+.........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (574)
T PRK11160 165 TLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLT 244 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665444333 3344556666677777777888899999999999999999999999999999999888888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCC
Q 000560 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1189 (1421)
Q Consensus 1111 ~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~-l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1189 (1421)
.+.....+++..+...++..+......+.++.|....++.|. +.....+..+...+.++.....+.+|+.++.+.|+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 245 GLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 666666665555444333333222234555565544444443 2223344455566777888899999999999876553
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc
Q 000560 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269 (1421)
Q Consensus 1190 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ID 1269 (1421)
+.. ...+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+|
T Consensus 325 ~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 325 TFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 211 1111 113457899999999997654569999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1270 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
|+|+++++.+++|+++++|||||.+|+|||||||... ++.+|++++++++++++++++.+ |+||||.+||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999875 46899999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||++||||++++|+|||||||||++|++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 9999999999999999999999999999999999999999988899999999999999999999999999984
No 22
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-70 Score=695.59 Aligned_cols=520 Identities=22% Similarity=0.308 Sum_probs=449.5
Q ss_pred HHHHHHHHHHHhhhHHHHHhhcccccc---cc-ccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 897 LLCQVLFQALQMGSNYWIAWATDEKRK---VS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1421)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~~~---~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~ 972 (1421)
+++.++..++....+++++...+.... .. ...+...++++.+...++.+++.++....+.+....++..+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 20 GVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555555566666543321111 11 11223345566666777788888999999999999999999999999
Q ss_pred CCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1421)
Q Consensus 973 ~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr 1052 (1421)
.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++.+.++.+++..++.+..+
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~ 179 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-
Q 000560 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII- 1131 (1421)
Q Consensus 1053 ~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~- 1131 (1421)
+..+......++..+.+.|+++|+.+||+++.++++.+++.+..++..+..........+.....+++..+...++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (571)
T TIGR02203 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIA 259 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999999999888887777777777666666655444333332
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEE
Q 000560 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1421)
Q Consensus 1132 ~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~ 1211 (1421)
......+.+++|.+..+.++...+...+..+...+.++.+...+.+|+.++.+.++|.+. ...+.+ +..+.|+++
T Consensus 260 ~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~ 334 (571)
T TIGR02203 260 LFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFR 334 (571)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEE
Confidence 233456788999888888888888888888999999999999999999999987655421 111111 245789999
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccC
Q 000560 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1421)
Q Consensus 1212 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQd 1291 (1421)
||+|+|+++.+++|+|+||+|++||+|+|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++|+|||
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 99999976556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHhhhcCCCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1292 PMLFQGTVRTNLDPLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1292 p~LF~gTIR~NLdp~~--~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
|++|+||||+||..+. +.+|++++++++++++++++.++|+||||+++|+|.+||||||||+|||||++++|+||+||
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999998763 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999998999999999999999999999999999974
No 23
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-69 Score=701.44 Aligned_cols=539 Identities=21% Similarity=0.282 Sum_probs=443.8
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhcccc-cccc---ccchhhhHHHhHhHHHHHHHHHHHHH
Q 000560 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVS---REQLIGVFIFLSGGSSFFILGRAVLL 951 (1421)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1421)
++..++.+++...+. +..++++.++...+..+.++.+....+.- +..+ ...+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666543322 22333344555556666677776555421 1111 11223344455556677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
...+.+...+++.++++++++.|++||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988887777777777777778888999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000560 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1421)
Q Consensus 1032 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1421)
+++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555555555555544555555556677888999999999999999999999999999999888888777776677
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCc
Q 000560 1112 WLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP 1190 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1190 (1421)
+.....+++..+...++.++ ......+.++.|.+..+.++...+...+..+...+.+++....+.+|+.++.+.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666655444333332 23344678888888778888888888888899999999999999999999998776643
Q ss_pred cccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000560 1191 LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1421)
Q Consensus 1191 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1270 (1421)
.. ...+.+ ...|.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||
T Consensus 443 ~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 11 111111 23578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
+|+++++.+++|+++++|||||.+|+|||||||... ++++|++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~ 670 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999988899999999999999999999999999984
No 24
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-69 Score=681.98 Aligned_cols=513 Identities=21% Similarity=0.267 Sum_probs=422.4
Q ss_pred HHHHHHHHHHhhhHHHHHhhcccc--cccc---ccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 898 LCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1421)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~ 972 (1421)
++.++..++....++.+++..+.- +... ...+++.+++++++..++.+++.++....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666555422 1111 11233445555666777788888888999999999999999999999
Q ss_pred CCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1421)
Q Consensus 973 ~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr 1052 (1421)
.|.++|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++...++..++...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888888888888889999998777666555444444444555555
Q ss_pred HHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-HH
Q 000560 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-II 1131 (1421)
Q Consensus 1053 ~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~ 1131 (1421)
+..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+.....+++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677889999999999999999999999999999888887777666655566665555555544333322 22
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEE
Q 000560 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1421)
Q Consensus 1132 ~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~ 1211 (1421)
......+.++.|....+..|...+...+..+...+..+.....+.+|+.++.+.+++... .. +...+..+.|+++
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~~-~~~~~~~~~i~~~ 324 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----KA-PVTAAPAPSLEFS 324 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----Cc-CCCCCCCCeEEEE
Confidence 222336778888777777777777777777888889999999999999999875433211 11 1112234689999
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccC
Q 000560 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1421)
Q Consensus 1212 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQd 1291 (1421)
||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||||
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 99999986555799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000560 1292 PMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1421)
Q Consensus 1292 p~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1370 (1421)
|.+|+|||||||... ++.+|+++++++++++++++++++|+||||.++|+|.+||||||||++||||++++|+|++|||
T Consensus 405 ~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE 484 (529)
T TIGR02857 405 PFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484 (529)
T ss_pred CcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999875 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEE
Q 000560 1371 ATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1415 (1421)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL 1415 (1421)
|||+||++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 485 ~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 485 PTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999988899999999999999999999986
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-69 Score=635.50 Aligned_cols=490 Identities=22% Similarity=0.285 Sum_probs=406.6
Q ss_pred chhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHH
Q 000560 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1421)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~ 1007 (1421)
.+++..+++.++..+....+.......+.++-..++.++++++.+.+..+-...|+|.+...++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666777777777788888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHH
Q 000560 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1421)
Q Consensus 1008 ~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~ 1087 (1421)
++.+.+..+.+++.+++.+|...++++..+++...+.......++...+..-.+-..+.+||.+.++|+.|+|+|+..+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999876665443333332223334445555556666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPR-SAIDPSLAGLAATYGLNLNVLQAWVIWN 1165 (1421)
Q Consensus 1088 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gl~l~~~l~l~~~~~~~i~~ 1165 (1421)
..++..+...++.+..+.....+---+..+|++..+.++.+++.... +.. |.++-...-+++..+.-+-..+..+-..
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999888888888887776666666778888888877776665432 222 3343332223333333344444444445
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCC
Q 000560 1166 LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTG 1245 (1421)
Q Consensus 1166 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTG 1245 (1421)
+-...+...+.+.+..+.+.|.+.+.. .......|.....|+.+|++++|+++. ++++|+||+++||+++||||+||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCC
Confidence 555566677889999999877664321 111122333345667779999998765 79999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcH
Q 000560 1246 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLA 1324 (1421)
Q Consensus 1246 SGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~ 1324 (1421)
||||||+++|.|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+ +.+||||+++++++++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999999999999998765 48999999999999999
Q ss_pred HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChh
Q 000560 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404 (1421)
Q Consensus 1325 ~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ 1404 (1421)
|++.. |+|||+.+||+|.+|||||+||++||||++++++++++|||||+||.+||+.|++.|.+.++++|||+||||++
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~ 516 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCEEEEEeCCeeC
Q 000560 1405 TVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1405 ti~~~DrIlvL~~G~Iv 1421 (1421)
.+.++|+|+|||+|+++
T Consensus 517 ~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 517 DAADADRIVVLDNGRLV 533 (559)
T ss_pred HHhcCCEEEEecCCcee
Confidence 99999999999999985
No 26
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-69 Score=623.95 Aligned_cols=475 Identities=21% Similarity=0.297 Sum_probs=405.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000560 941 SFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020 (1421)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~ 1020 (1421)
.+.-++..+.......+.-..++.++|+++...+..-..+-..|+++||+..|++.+|..+-..+...+.++...+...+
T Consensus 72 t~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i 151 (573)
T COG4987 72 TAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTI 151 (573)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 33334444455677888889999999999999988899999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 000560 1021 LMSQAAWQVFPLFLV-ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1099 (1421)
Q Consensus 1021 v~~~~~~~~~~v~ip-~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1099 (1421)
.+.+.+|++.+.+.. ++++.+.+...+.+.+|...+.-...++.+.++|.|.+.|....+.||+++.|.+.....-+..
T Consensus 152 ~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~ 231 (573)
T COG4987 152 GLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231 (573)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence 888888888665443 4455556677777888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHH
Q 000560 1100 SCVTFHNCGTMEWLCLRINLLFNFAFF-LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI-WNLCNVENKMISVE 1177 (1421)
Q Consensus 1100 ~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i-~~~~~le~~~~sve 1177 (1421)
.+..........|....+.++..+.+. ..++.......|..+...+.+++.-.+.....+.-+. ..+.++....-|.+
T Consensus 232 ~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 999999999999999999988887766 3334343344454442222222221122222222233 45577888888999
Q ss_pred HHHHhhcCCCCCccccCCCCCCCCCCCCC-cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh
Q 000560 1178 RILQFTNIPSEAPLVIKNSRPSPEWPSSG-KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF 1256 (1421)
Q Consensus 1178 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1421)
|+.+..+.++|.... .. .-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+||||||||||+++|.
T Consensus 312 Rl~~i~~q~~e~~~~---~~---~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 312 RLNDILDQKPEVTFP---DE---QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHhhhccCCcccCCC---cc---ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 999988766654321 11 112222 79999999999998889999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccC
Q 000560 1257 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLD 1335 (1421)
Q Consensus 1257 rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLd 1335 (1421)
|-++|++|+|..+|.+++.++.+++|+.|++++|.+++|+||+|+||... ++.||||+|++|+++||.+++++.|+||+
T Consensus 386 ~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred hccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhh
Confidence 99999999999999999999999999999999999999999999999864 46899999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEE
Q 000560 1336 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1415 (1421)
Q Consensus 1336 t~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL 1415 (1421)
|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+.-+..||||+||
T Consensus 466 t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl 545 (573)
T COG4987 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVL 545 (573)
T ss_pred chhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeC
Q 000560 1416 DEGKLK 1421 (1421)
Q Consensus 1416 ~~G~Iv 1421 (1421)
|+|+++
T Consensus 546 ~~Gkii 551 (573)
T COG4987 546 DNGKII 551 (573)
T ss_pred ECCeee
Confidence 999975
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-70 Score=691.52 Aligned_cols=490 Identities=23% Similarity=0.318 Sum_probs=407.7
Q ss_pred cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHH
Q 000560 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1421)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~ 1006 (1421)
..+...|+.++++..+..++...++...+.+...+++.+.+++++|++++|||.+..|.+..|+++|++.+...+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45667788888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHH
Q 000560 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQEN 1086 (1421)
Q Consensus 1007 ~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~ 1086 (1421)
.++..+.++++.+++.++..|++.++++++.++.......+.+..-.+...+..+.+..-+...|++.+++|+.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999888887777666666666666666666777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH---HHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000560 1087 RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF---FLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWV 1162 (1421)
Q Consensus 1087 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~ 1162 (1421)
+..+++.+.++...+...... -|.++...+...++. +...++. ..+..+..++|.+...+...+.-...+...
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 999999998888776554322 122222222211111 1122221 122234455554433333333333334444
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCC-CcceeeeeEEeeCCcEEEEE
Q 000560 1163 IWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVV 1241 (1421)
Q Consensus 1163 i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIV 1241 (1421)
...+..+.+...+..+|.+.++..++.....+..++ .-..+|.|+|+||+|+|+... .++|+|+||+|++||.||+|
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 455666777788899999987643332111111111 123579999999999996442 26999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHH
Q 000560 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINK 1320 (1421)
Q Consensus 1242 GrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~ 1320 (1421)
|+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+||+.... +.|++|+.+|++.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 6899999999999
Q ss_pred cCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Q 000560 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1400 (1421)
Q Consensus 1321 ~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IA 1400 (1421)
++.++||.++|+|+||.+||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhccCEEEEEeCCeeC
Q 000560 1401 HRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1401 HRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||+||+++|+|+||++|+||
T Consensus 546 HRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred eehhhhhccCEEEEEECCEEE
Confidence 999999999999999999986
No 28
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-68 Score=675.87 Aligned_cols=525 Identities=18% Similarity=0.249 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccccccc-ccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000560 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1421)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 971 (1421)
+.+++++.++..++....++++.+..+.-.... ...++..++++.++..+..+....+......+....+..+++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666777777888776654221111 1112222333333333333333333344445555556669999999
Q ss_pred cCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1421)
Q Consensus 972 ~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~s 1051 (1421)
+.|+.+|++.+.|++++|+++|++.+...+...+..++..++..++.+++++..+|++.++++.++++++.+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777777777777777788888888999988887777777777777888888
Q ss_pred HHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000560 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1421)
Q Consensus 1052 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1131 (1421)
++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999888888777766555555555544444443333332222
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEE
Q 000560 1132 -LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1421)
Q Consensus 1132 -~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1421)
......|.+++|.+..+..+...+...+..+...+.++.....+.+|+.++.+.+++.+.. ....+.. +..+.|++
T Consensus 261 g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~~-~~~~~I~~ 337 (588)
T PRK13657 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDLG-RVKGAVEF 337 (588)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCcC-CCCCeEEE
Confidence 3334567888888888888888888888888888888888888999999987754432110 1111111 23467999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEcc
Q 000560 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1421)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1421)
+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++|+||
T Consensus 338 ~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 338 DDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 9999999744 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1291 dp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
||.+|+||||+||... ++.+|++++++++++++++++.++|+|+||.++++|.+||||||||+|||||++++|+|||||
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999876 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999988899999999999999999999999999974
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.9e-68 Score=676.94 Aligned_cols=540 Identities=22% Similarity=0.300 Sum_probs=441.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccc-ccccc---ccchhhhHHHhHhHHHHHHHHHHHHHHH
Q 000560 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDE-KRKVS---REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1421)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~-~~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1421)
+.++.|++...+.. .+.+++.++...+....++.+....+. -+..+ ...++..++++.+...++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555433222 223334455555666666665544432 11111 1123333444445556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1421)
Q Consensus 954 ~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ 1033 (1421)
.+.+....++..+++++++.|.++|++...|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 000560 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1421)
Q Consensus 1034 ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1421)
+...++.+.+..++.+..+...+.....++...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555556666667777777777888889999999999999999999999999999998888777666655555565
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccc
Q 000560 1114 CLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1421)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1421)
......+..+...+..++ ......+.++.|....+..+...+...+..+...+.++.+...+.+|+.++.+.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 555544433322222222 2334567788888888888888888889999999999999999999999998866543211
Q ss_pred cCCCCCCCCCCCCCcEEEEeeeeeeCCCC-CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe
Q 000560 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1421)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~ 1271 (1421)
....+..+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 325 --~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 --AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred --CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 111112234457899999999997543 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
|+++++.+++|++++|+||||.+|+||||+||.+.. +.+|++++++++++++.+++.++|+|+||+++|+|.+||||||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 999999999999999999999999999999998754 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|+||+||||||++|.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIV 553 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999988899999999999999999999999999974
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.4e-67 Score=660.04 Aligned_cols=535 Identities=19% Similarity=0.269 Sum_probs=423.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccc-cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000560 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR-EQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958 (1421)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~-~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 958 (1421)
++.|++...+ .+.+.+++.++..++.++.++.+++..+.-...+. ..++..++++.+...+..++...+......+.
T Consensus 10 l~~~l~~~k~--~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKN--RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554322 22334445556666777777777665542111111 11122222222223333333344444555555
Q ss_pred HHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1421)
Q Consensus 959 s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~ 1038 (1421)
..+++.++++++++.|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.+.++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667799999999999999999999999999999999998888888887888888888888889999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 000560 1039 ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRIN 1118 (1421)
Q Consensus 1039 ~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1118 (1421)
+++++.+.+.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..+.......+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888899999999999999999999999999988888887776665544433333333333
Q ss_pred HHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCC
Q 000560 1119 LLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSR 1197 (1421)
Q Consensus 1119 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~ 1197 (1421)
++..+...++.++ ......+.++.|.+..+..|...+...+..+...+.++.....+.+|+.+..+.+++.+. ...
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~ 324 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Ccc
Confidence 3333322222222 233446778888887778888777777777888888888888999999998876543211 111
Q ss_pred CCCCCC-CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC
Q 000560 1198 PSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276 (1421)
Q Consensus 1198 ~~~~wp-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i 1276 (1421)
+ +.++ ..+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+.++
T Consensus 325 ~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 A-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred C-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 1 1122 35679999999999754 3589999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1277 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
+.+++|++++++||||.+|++|+|+||... ++.+|++++++++.+++++++.++|+|+||.++++|.+||||||||++|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~l 482 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999875 4679999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||+++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 483 ARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 483 ARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999888899999999999999999999999999974
No 31
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.5e-67 Score=664.45 Aligned_cols=486 Identities=22% Similarity=0.263 Sum_probs=404.9
Q ss_pred hhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHH
Q 000560 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAF 1010 (1421)
Q Consensus 931 ~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~ 1010 (1421)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+...+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~ 119 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVD 119 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444455566666777778889999999999999999999999999999999999999999998777777777777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHH
Q 000560 1011 ALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1421)
Q Consensus 1011 ~~~~~l~~~~v~-~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~ 1089 (1421)
.++..++.++++ +..+|++.++++..+++..++.+.+.+..++..+......+.+.+++.|++.|+.+||+|+.|+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 120 SLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 666655555555 4788888777766666666666666666666666677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCN 1168 (1421)
Q Consensus 1090 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~ 1168 (1421)
+++.+..++..+..+.......+..........+...++.. .......+.++.|.+..+..|...+...+..+...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 279 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNI 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777666655444444333333333222222211 12334467788888777777777777777778888889
Q ss_pred HHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCH
Q 000560 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGK 1248 (1421)
Q Consensus 1169 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGK 1248 (1421)
+.....+.+|+.++.+.++|.+. ...+.+ +..+.|+++|++|+|+++.+++|+|+||+|+|||++||||+|||||
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 354 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCH
Confidence 99999999999999876644321 111111 2356899999999998655579999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHH
Q 000560 1249 STLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIV 1327 (1421)
Q Consensus 1249 STLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i 1327 (1421)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|+||||+||... .+++|++++++++.+++++++
T Consensus 355 STLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i 434 (569)
T PRK10789 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDI 434 (569)
T ss_pred HHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 468999999999999999999
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 000560 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI 1407 (1421)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~ 1407 (1421)
.++|+|+||.++++|.+||||||||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++.
T Consensus 435 ~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT 514 (569)
T ss_pred HhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccCEEEEEeCCeeC
Q 000560 1408 DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1408 ~~DrIlvL~~G~Iv 1421 (1421)
.||+|++|++|+++
T Consensus 515 ~~d~i~~l~~G~i~ 528 (569)
T PRK10789 515 EASEILVMQHGHIA 528 (569)
T ss_pred cCCEEEEEeCCEEE
Confidence 99999999999974
No 32
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-66 Score=660.21 Aligned_cols=539 Identities=19% Similarity=0.243 Sum_probs=421.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1421)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1421)
++...+.+++.+++..++.++..++..+.|+++..+++.+..++. .... .+.+++++++..++..++.....+...+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PREA-LLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788889999999999999999999999999997642211 1111 23334445555566666666667777889
Q ss_pred HHHHHHHHHHHHHHHHhccccCC---CChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000560 346 GIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1421)
Q Consensus 346 g~riR~~L~~~Iy~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1421)
+.++...+...+|+|.++++... .++|+++|.++.|++++.+++. .+..++...+.+++++++++. ++|..+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999987542 3899999999999999998864 466666666655555544432 343444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000560 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYT 497 (1421)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I----~~~R~~El~~l~~~~~~ 497 (1421)
++++++...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556678888889999999999999999999999999999999999877766 55566665555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 498 CSAIAFLFWASPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (1421)
Q Consensus 498 ~~~~~~~~~~~p~~v~~~tF~~~~~~~~--------~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (1421)
..+..++... +.+ .++.++.+.+.|. .+++..+|.++.+...+..|+..++..+..+.++++|.+||.++
T Consensus 250 ~~~~~~~~~~-~~~-~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 250 SAVLEFFASI-SIA-LVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHH-HHH-HHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222 221 1223333333332 23334455666677778899999999999999999999999999
Q ss_pred hcccCCCCCCCCCC-CCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCc
Q 000560 570 IKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1421)
Q Consensus 570 L~~~e~~~~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 647 (1421)
++.++.++.....+ .......|+++|++|.|.++ +++|+| ||++++|+++||+||+|||||||+++|+|++
T Consensus 328 l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 328 LETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 98765221111111 11123469999999877533 478999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCcc
Q 000560 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (1421)
Q Consensus 648 ~~~~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ 713 (1421)
|++|++ .++| .++||||+|++|++||+|||.+|++ .++++++++++.|+++++++.+|+|++|.
T Consensus 401 -p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 401 -PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred -CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 899997 7877 5899999999999999999999965 78899999999999999999999999999
Q ss_pred ccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEe
Q 000560 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1421)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~ 793 (1421)
+||+|.+||||||||++||||+++||+|+||||||||||+++++++.+ .+....+++|+|+|||+++.+..||+|++|+
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999886 5666678999999999999999999999999
Q ss_pred CCEEEEecCchhhhhhhhhHHHHHHHH
Q 000560 794 DGKIEQSGKYEDLIADQNSELVRQMKA 820 (1421)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1421)
+|+|+++|+++|+.+ .+..+.++...
T Consensus 558 ~G~i~e~G~~~eL~~-~~~~y~~l~~~ 583 (588)
T PRK11174 558 DGQIVQQGDYAELSQ-AGGLFATLLAH 583 (588)
T ss_pred CCeEeecCCHHHHHh-cchHHHHHHHH
Confidence 999999999999997 55566665543
No 33
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-69 Score=606.41 Aligned_cols=473 Identities=22% Similarity=0.353 Sum_probs=387.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 000560 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1421)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~ 1019 (1421)
+.++.-+|+++......-+.+.+-.++++++....+.|.-....|+.+.-+.+-.+.+. .+...+.++.-.+..+...+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 45667778888888888899999999999999999999999999998877776666555 33333333333333333333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHH
Q 000560 1020 IL-MSQAAWQVFPLFLVILGISIWYQ----AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1421)
Q Consensus 1020 ~v-~~~~~~~~~~v~ip~~~~~~~~~----~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1421)
+. ....+|++.+++..++.++..+. .+--+..|.+...+.++ ...-.+++-+.+|+|-|++|+...+++.+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 22 23356777766666655554332 22222233333333333 44567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000560 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1421)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~ 1173 (1421)
.++++++..+........++..-+.+..+......+ .++....+..+.|...+..+|.+++-+.++|+-.-+-.++++.
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 999999988877766666666555555444333222 2333345667777778999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH
Q 000560 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1421)
Q Consensus 1174 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~ 1253 (1421)
+-.|++.+..+.++|- .+.+..+|---.+|.|+|+||+|.|+|+.| ||+||||+++||+.||+|||||+||||+++
T Consensus 507 iDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 9999999998754443 222222222235899999999999998765 999999999999999999999999999999
Q ss_pred HHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhccc
Q 000560 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQR 1332 (1421)
Q Consensus 1254 ~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~ 1332 (1421)
+|+|++|.++|+|.|||+||+.+..+.||+.||+||||.+||++||..||... ..++|||+.+|++.++++|.|.+.|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999875 46899999999999999999999999
Q ss_pred ccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEE
Q 000560 1333 LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV 1412 (1421)
Q Consensus 1333 gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrI 1412 (1421)
|++|.|||+|-.||||||||+++||++||+|.|++||||||+||..||+.||..+.+..+++|.|+||||++||.++|.|
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~I 742 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLI 742 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeeC
Q 000560 1413 LVLDEGKLK 1421 (1421)
Q Consensus 1413 lvL~~G~Iv 1421 (1421)
+|+++|+|+
T Consensus 743 Lvi~~G~Iv 751 (790)
T KOG0056|consen 743 LVISNGRIV 751 (790)
T ss_pred EEEeCCeEe
Confidence 999999985
No 34
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-66 Score=604.28 Aligned_cols=488 Identities=22% Similarity=0.333 Sum_probs=374.6
Q ss_pred cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHH
Q 000560 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1421)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~ 1006 (1421)
...+..|.+..+++.+|..++.+.+++...++-+....+.+.+.++..+++|.+..+|.+.+....-...+...+.-.+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999998887777776666666655555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccH
Q 000560 1007 GLAFALIQLLSIIILMS-QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085 (1421)
Q Consensus 1007 ~~~~~~~~~l~~~~v~~-~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e 1085 (1421)
.++..++.+......+. -..+.+.++++..+..|..+..+..+.-...++....+.....+..-|++.+..+||.|+.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 55555444433332222 22333433333333333221111111112223333344455567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIW 1164 (1421)
Q Consensus 1086 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~ 1164 (1421)
++..+++...+.++-+......+....+.+.-..+.+.....+..... -...+..+.+...+.-+...++...+..+-.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 999999999998888877666655555554444444333222222211 1122334444444555555566666666665
Q ss_pred HHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCC
Q 000560 1165 NLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244 (1421)
Q Consensus 1165 ~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrT 1244 (1421)
.+.++-..+.-.+-.....+ .+.. +.+. +++--+..|.|+|+||++.|.|+. ++|+|+||+|++||||||||+|
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~--~~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLE--VDED--IQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhh--hhhh--hhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCC
Confidence 56665555444433332211 1110 1111 122223467899999999998764 5999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCc
Q 000560 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHL 1323 (1421)
Q Consensus 1245 GSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L 1323 (1421)
||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.++++++++
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999998765 6899999999999999
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCh
Q 000560 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1421)
Q Consensus 1324 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl 1403 (1421)
+|.+.++|+|++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|+....++|+|+|+||+
T Consensus 467 hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 467 HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRL 546 (591)
T ss_pred HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhhhccCEEEEEeCCeeC
Q 000560 1404 PTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1404 ~ti~~~DrIlvL~~G~Iv 1421 (1421)
+++++||+|++||+|+|+
T Consensus 547 ~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 547 DLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred hhHhcCCEEEEEECCeeE
Confidence 999999999999999974
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.9e-65 Score=642.11 Aligned_cols=513 Identities=17% Similarity=0.161 Sum_probs=408.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhccccc-cccc---cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 897 LLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1421)
Q Consensus 897 ~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~ 972 (1421)
+++.++...+.+..++.+....+.-. ..+. ..++.+++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566666666665553211 1111 1233344444555667777888888899999999999999999999
Q ss_pred CCcccccccChhhHHHHhhchhhHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1421)
Q Consensus 973 ~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~-~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~s 1051 (1421)
.|++. .|...+++++|++.+...+.. .+..++..++.++ .+++++..+|++.++++...++.+.+..++.+..
T Consensus 92 ~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred CcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99842 366789999999999887765 3444444444443 3456788888887665544444444555555555
Q ss_pred HHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-H
Q 000560 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-I 1130 (1421)
Q Consensus 1052 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~ 1130 (1421)
++..+...+..+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..........+......++..+...++. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677788899999999999999999999999999998888877666655444444433333333333222222 2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEE
Q 000560 1131 ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1421)
Q Consensus 1131 ~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~ 1210 (1421)
.......|.+++|.+..+..+...+...+..+...+.++.....+.+|+.++.+.++|.+. . .+.+ +..+.|++
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~-~~~~--~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A-MPLP--EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-CCCC--CCCCeEEE
Confidence 2233456788999888888888888888888899999999999999999999976655321 1 1111 23468999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEcc
Q 000560 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1421)
Q Consensus 1211 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1290 (1421)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++++||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1291 dp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
||.+|++|+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998654 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||+||.+|++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999875 689999999999999999999999999974
No 36
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-64 Score=637.57 Aligned_cols=513 Identities=17% Similarity=0.135 Sum_probs=398.1
Q ss_pred HHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000560 898 LCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISF 977 (1421)
Q Consensus 898 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sf 977 (1421)
++.++.....+..++.++.+.+.... .....+..++++.++..++.++..++....+.+...+++.++++++++.|++|
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~ 103 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENF-LGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEE 103 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33444455555666666655432111 11112333555555666777888888889999999999999999999999999
Q ss_pred ccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 978 FDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARM 1057 (1421)
Q Consensus 978 fd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl 1057 (1421)
|++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.+.++++.++++.+.+..+..+..++..+.
T Consensus 104 ~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (555)
T TIGR01194 104 IDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHA 182 (555)
T ss_pred HHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 467777888888888889999999998877666665555555555555555556
Q ss_pred HhHhhccHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000560 1058 VGTRKAPILHHFSESIAGATTIRCFNQEN--RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135 (1421)
Q Consensus 1058 ~~~~~sp~~~~~~Etl~G~~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~ 1135 (1421)
.....+.+.+++.|.+.|+.++|+|+.++ ...+++.+..++..+................+++..+...+..++. .
T Consensus 183 ~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 260 (555)
T TIGR01194 183 ARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAA--A 260 (555)
T ss_pred HHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 66677889999999999999999999854 4455555555555554433222222222222222222111111111 1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcccc--CCCC-C--CCCCCCCCcEEE
Q 000560 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI--KNSR-P--SPEWPSSGKIEL 1210 (1421)
Q Consensus 1136 ~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~--~~~~-~--~~~wp~~g~I~~ 1210 (1421)
..+.++.|.+.....|...+...+..+...+.++++...+.+|+.++.+.+.+++... ++.. . .+.....+.|++
T Consensus 261 ~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (555)
T TIGR01194 261 MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIEL 340 (555)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEE
Confidence 1256777777777778878888888888999999999999999999976432221110 0000 0 011123468999
Q ss_pred EeeeeeeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1211 ENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1211 ~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++
T Consensus 341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 420 (555)
T TIGR01194 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420 (555)
T ss_pred EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcE
Confidence 9999999753 2369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
+||||++|++|+|+|+. ++.+|++++++++++++++++.++|+|+||. .+||||||||++||||++++|+|||
T Consensus 421 v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 421 IFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred EccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999974 3578999999999999999999999999995 6899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHH-H-cCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1368 LDEATASIDTATDNVIQQTIRE-E-TSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~-~-~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+|+
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999887643 2 3689999999999999999999999999984
No 37
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-64 Score=603.52 Aligned_cols=541 Identities=23% Similarity=0.324 Sum_probs=428.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1421)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1421)
.+.+..|+.+..+.++.++.......-|.++.++++.+.. .+... ..+.-..++++.+...+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568888888889999988888899999999998876 22201 112234444444444444444455566667778
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000560 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1421)
Q Consensus 346 g~riR~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~-~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1421)
..|+|..+...+-++-...-... .+|++++.++.|++-+.+.+ .++.+..-..+|...++.++.. +.|--++..+++
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i~ 297 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHH
Confidence 88888877777666655443332 79999999999999999876 4577777777788877766553 232444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSA 500 (1421)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~----f~~~I~~~R~~El~~l~~~~~~~~~ 500 (1421)
+.+++.+..++++.+++.-++..++..+-.+...|.|++||+||.|+-|+. |.+++++.++.-.+.-....+....
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~ 377 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS 377 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhH
Confidence 556666667777777777777777777778899999999999999999975 5555555544332221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC
Q 000560 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKP 578 (1421)
Q Consensus 501 ~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~~ 578 (1421)
..++. --..++++.+|.+...++.+|++...+++-+-..+..++..+...++.++++..+-+|+.+|++.++ +.+
T Consensus 378 ~~~~~--~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~- 454 (716)
T KOG0058|consen 378 TNLLG--NLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT- 454 (716)
T ss_pred HHHHH--hHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-
Confidence 11111 1235667778888888999999999999999999999999999999999999999999999999876 222
Q ss_pred CCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEE
Q 000560 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1421)
Q Consensus 579 ~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~ 657 (1421)
-...|. .-...|+++|++|+|+.+ ++.++|+| ||+|+|||.||+|||+||||||+.++|+..++|++|+| .+
T Consensus 455 G~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-ll 527 (716)
T KOG0058|consen 455 GTLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-LL 527 (716)
T ss_pred Cccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-EE
Confidence 111222 345789999999999988 67899999 99999999999999999999999999999999999997 77
Q ss_pred CC-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 658 ~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
+| +||+|.|+|.+|++||+|||.+|.+ .+++..+++.+.+..++.+..+|+|.+|.+||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 77 4899999999999999999999987 345667777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCc
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1421)
||||||||||||++||.|+||||.|||||++. +++.++.+....+++|||+|.|+++.++.||+|+++++|++++.|++
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999975 66778888888899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHh
Q 000560 804 EDLIADQNSELVRQMKAH 821 (1421)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~ 821 (1421)
+|+++..+..+.+++..+
T Consensus 687 ~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred HHHhhCcccHHHHHHHHh
Confidence 999996656777777654
No 38
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.2e-64 Score=680.27 Aligned_cols=487 Identities=18% Similarity=0.236 Sum_probs=401.9
Q ss_pred hhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHH
Q 000560 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1421)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~ 1008 (1421)
+...+++++++..++.+++.++....+.+...+++.++++++++.|++|||..+.|++.+|++.|+..+...+...+..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHH
Q 000560 1009 AFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1421)
Q Consensus 1009 ~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f 1088 (1421)
+..++.+++.++++++.+|.+.++++.++++++++..++.+..+...+......+...+.+.|++.|+.+||+|+.|+++
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 258 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTI 258 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHH
Confidence 99999999999999999999998887777777777777777777777777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HhcC--------CCCCHHHHHHHHHHHHHHHHHH
Q 000560 1089 LLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-TLPR--------SAIDPSLAGLAATYGLNLNVLQ 1159 (1421)
Q Consensus 1089 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~-~~~~--------~~~~~~~~gl~l~~~l~l~~~~ 1159 (1421)
.+++.+..+...+..+.......+......++..+..+++.++.. .... +.++++.+...+.+.+.....+
T Consensus 259 ~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l 338 (1466)
T PTZ00265 259 LKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFML 338 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence 999998888777766554444443333333333222222222211 1112 2234443332222222222233
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCC-CcceeeeeEEeeCCcEE
Q 000560 1160 AWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKI 1238 (1421)
Q Consensus 1160 ~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~Gekv 1238 (1421)
..+...+..+.....|.+|+.+.++.+++.+. .. .....|..+.|+|+||+|+|+... .++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~--~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVEN--ND--DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CC--CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 44555677888889999999999886654321 11 111123345899999999997432 36999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCCCCccEEEE-cCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC----------
Q 000560 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILI-DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---------- 1307 (1421)
Q Consensus 1239 gIVGrTGSGKSTLi~~L~rl~~p~~G~I~I-DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---------- 1307 (1421)
||||+||||||||+++|.|+|+|++|+|.+ ||.|+++++.+++|++|++|||+|.||++||++||....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 579999999999999999999999999999999997521
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000560 1308 ------------------------------------------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339 (1421)
Q Consensus 1308 ------------------------------------------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~ 1339 (1421)
+.+|++++++++++++++++.++|+|+||.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 35789999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeC
Q 000560 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1421)
Q Consensus 1340 e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~ 1417 (1421)
++|.+||||||||++|||||+++|+|||||||||+||++++..|++.|++.. +++|+|+||||++++..||+|+||++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 48999999999999999999999999
Q ss_pred Ce
Q 000560 1418 GK 1419 (1421)
Q Consensus 1418 G~ 1419 (1421)
|+
T Consensus 655 g~ 656 (1466)
T PTZ00265 655 RE 656 (1466)
T ss_pred Cc
Confidence 84
No 39
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.1e-63 Score=641.42 Aligned_cols=534 Identities=16% Similarity=0.210 Sum_probs=435.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1421)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 346 (1421)
+..++.+++.++...+..++..++..+.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDW-LRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888889999999999999987654332 111 334455555555666666666677788899
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000560 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1421)
Q Consensus 347 ~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1421)
.++...+...+|+|.++++.. .+++|+++|.++.| +.+.+++. .+..+....+.+++.+++++..=+ +.+++.+
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~l 300 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999998653 34999999999988 67887754 344445555555555555554333 6666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1421)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~ 502 (1421)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++..+.+.++.+...+.....+...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888888999999999999999999999999999999999999999999888887776655554444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000560 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1421)
Q Consensus 503 ~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1421)
.+...... .+.++.++++.+.++.++.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22222222 2334567778788889999999999999999999999999999999999999999999998765221111
Q ss_pred -------CCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCC
Q 000560 581 -------EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1421)
Q Consensus 581 -------~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1421)
..+.......|+++|++|+|++. +++.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 01101223579999999999864 3578999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCC-CCCHHHHHHHHHHhccchhHHhhcCCCCccccCCC
Q 000560 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1421)
Q Consensus 653 ~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~-~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g 718 (1421)
++ .++| .++||||+|+++++||+|||.++. +.++++..++++.+++++++..+|+|.+|.+||+|
T Consensus 535 ~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 535 EI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred EE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 97 7766 479999999999999999999886 47788899999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEE
Q 000560 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1421)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~ 798 (1421)
.+||||||||++||||++++|+|+||||||||||+++++++++.+.+ .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999886543 589999999999999999999999999999
Q ss_pred EecCchhhhhhhhhHHHH
Q 000560 799 QSGKYEDLIADQNSELVR 816 (1421)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~ 816 (1421)
+.|+++|+++ .+..+.+
T Consensus 691 ~~G~~~~Ll~-~~~~y~~ 707 (710)
T TIGR03796 691 QRGTHEELWA-VGGAYAR 707 (710)
T ss_pred EecCHHHHHH-cCCcHHH
Confidence 9999999987 4444444
No 40
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-65 Score=610.78 Aligned_cols=443 Identities=26% Similarity=0.399 Sum_probs=337.0
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCC----CCcEEEECC-----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~----~G~vi~~~g----- 659 (1421)
.++++|.+.++.... ...+.++| ||++.+||++||+|++||||||+.++|+|.+++. +|+| .++|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 688999888887541 22468999 9999999999999999999999999999999876 7886 5544
Q ss_pred ------------EEEEEcCCCcC-CC--CcHHHHhcc----CCCC-CHHHHHH---HHHHhccchhHHhhcCCCCccccC
Q 000560 660 ------------KKAYVPQSSWI-QT--GTIRENILF----GKDM-RQSFYEE---VLEGCALNQDIEMWADGDLSVVGE 716 (1421)
Q Consensus 660 ------------~iayv~Q~~~i-~~--~Ti~enI~f----g~~~-~~~~y~~---v~~~c~l~~dl~~~~~gd~t~ig~ 716 (1421)
.|||++|+|+- +| .||.+-|.- .... .++..++ .++..+|.+. ... +.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~-------~~~--~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDP-------ERR--DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCCh-------hhh--cc
Confidence 47999999862 33 577766643 2222 2222233 3333333322 211 56
Q ss_pred CCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEEEEe
Q 000560 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1421)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~ 793 (1421)
.+..|||||||||.||+|+..+|+++|+||||+|||+.++.+|.+. ++.+. .|.++|+||||++.+.+ ||+|+||+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 8899999999999999999999999999999999999999999874 44443 58999999999999876 99999999
Q ss_pred CCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcC
Q 000560 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELG 873 (1421)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 873 (1421)
+|++++.|+.++++++...++.+.+-+
T Consensus 230 ~G~iVE~G~~~~i~~~p~hpYT~~Ll~----------------------------------------------------- 256 (539)
T COG1123 230 KGEIVETGPTEEILSNPQHPYTRGLLA----------------------------------------------------- 256 (539)
T ss_pred CCEEEEecCHHHHHhccCCcccHHHHh-----------------------------------------------------
Confidence 999999999999886321111100000
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHH
Q 000560 874 RVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1421)
Q Consensus 874 ~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1421)
..|....
T Consensus 257 ----------------------------------------------a~p~~~~--------------------------- 263 (539)
T COG1123 257 ----------------------------------------------AVPRLGD--------------------------- 263 (539)
T ss_pred ----------------------------------------------hCCCccc---------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1421)
Q Consensus 954 ~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ 1033 (1421)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 000560 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1421)
Q Consensus 1034 ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1421)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcccc
Q 000560 1114 CLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI 1193 (1421)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~ 1193 (1421)
. .+ ...+.+.
T Consensus 264 ------------------------~--------------------------------------~~----~~~~~~~---- 273 (539)
T COG1123 264 ------------------------E--------------------------------------KI----IRLPRRG---- 273 (539)
T ss_pred ------------------------c--------------------------------------cc----ccccccc----
Confidence 0 00 0000000
Q ss_pred CCCCCCCCCCCCCcEEEEeeeeeeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCcc
Q 000560 1194 KNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1421)
Q Consensus 1194 ~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G 1264 (1421)
+ -+...-++++|++.+|.. ....+++||||++++||.+||||.||||||||.++|+|+++|++|
T Consensus 274 ----~---~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G 346 (539)
T COG1123 274 ----P---LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG 346 (539)
T ss_pred ----c---cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0 002235889999999974 124689999999999999999999999999999999999999999
Q ss_pred EEEEcCee--CCCCChHHHhcccEEEccCCccc---cccHhhhcC-CCC---CC----CHHHHHHHHHHcCcHH-HHHhc
Q 000560 1265 RILIDGVD--ISMIGLQDLRSRLSIIPQDPMLF---QGTVRTNLD-PLE---QH----SDQEIWEVINKCHLAE-IVRQD 1330 (1421)
Q Consensus 1265 ~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~---~~----sdeeI~~aL~~~~L~~-~i~~l 1330 (1421)
+|.++|.| .+.-....+|+++-+|.|||+-. ..||+++|. |.. .. ..+.+-+.|++++|.+ +..+.
T Consensus 347 ~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 99999977 33333556888999999999633 459999985 432 11 2234777789998875 33333
Q ss_pred ccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc
Q 000560 1331 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID 1408 (1421)
Q Consensus 1331 p~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~ 1408 (1421)
| ..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|++..+ +.|.|+|||++..+..
T Consensus 427 P-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 427 P-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred c-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 3 45999999999999999999999999999999999999999999987543 6899999999999976
Q ss_pred -cCEEEEEeCCeeC
Q 000560 1409 -NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1409 -~DrIlvL~~G~Iv 1421 (1421)
||||+||++|+||
T Consensus 496 i~drv~vm~~G~iV 509 (539)
T COG1123 496 IADRVAVMYDGRIV 509 (539)
T ss_pred hCceEEEEECCeEE
Confidence 9999999999986
No 41
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.7e-62 Score=634.30 Aligned_cols=537 Identities=20% Similarity=0.236 Sum_probs=430.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1421)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1421)
+++..++.+++.++...++.++..++..+.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSL-LVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778888888899999999999999999999987653322 111 3334455555556666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000560 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-I-HRIWLLPVQVFLALVILYKNLGAAPAF 419 (1421)
Q Consensus 345 ~g~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~-h~~w~~plqi~~al~lL~~~lG~~a~l 419 (1421)
++.++...+...+|+|.++++.. .+++|+++|.++ |++.+.+++.. + ..+...++ +++++++++..-+ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSW-KLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998643 348999999997 89999887643 2 23333333 3334444443333 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1421)
Q Consensus 420 ~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~ 499 (1421)
+.++++++...+...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677778888889999999999999999999999999999999999999888877765554444444333333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000560 500 AIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1421)
Q Consensus 500 ~~~~~~~~~p~~--v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1421)
....+......+ +.++.++.|...++.++.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 322222222222 223456777777888999999999999999999999999999999999999999999998765221
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEE
Q 000560 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1421)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~ 656 (1421)
.... ........|+++|++|+|+++ +++.|+| ||++++||++||+|+||||||||+++|+|+++|++|++ .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111123469999999999754 3578999 99999999999999999999999999999999999997 7
Q ss_pred ECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
++| .++||||+|++|++||+|||.+|++.++++..++++.|+++++++.+|+|.+|.+||+|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 776 4799999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCc
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1421)
|||||++||||++++|+|++||||||+||+++++++.+.+ ... ++|+|+|||+++.++.||+|++|++|+|+++|++
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999988764 333 6899999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHH
Q 000560 804 EDLIADQNSELVRQMK 819 (1421)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1421)
+|+++ .+..+.++..
T Consensus 669 ~~Ll~-~~~~y~~l~~ 683 (686)
T TIGR03797 669 DELMA-REGLFAQLAR 683 (686)
T ss_pred HHHHh-CCcHHHHHHH
Confidence 99987 5556655543
No 42
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.6e-62 Score=635.46 Aligned_cols=530 Identities=22% Similarity=0.311 Sum_probs=433.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1421)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1421)
.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888899999999999999999987653322 111 2334444444555556666556667778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC--CCChHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000560 345 IGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1421)
Q Consensus 345 ~g~riR~~L~~~Iy~K~L~ls~~--~~~~G~ivnlms~D~~ri~~~~~~--~h~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1421)
++.++...+...+|+|.++++.. .+++|++++.+ .|++.+.++... +..+...++-+ +.+++++..-+ +.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAIIGG-PLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHh-HHHHH
Confidence 89999999999999999998654 33899999999 799999987643 23333444433 33334443333 66677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1421)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~ 500 (1421)
.++++++.+++..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+.....+.
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999999988887777666655555444
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 000560 501 IAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1421)
Q Consensus 501 ~~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~ 577 (1421)
...+...... .+.++.++++.+.++.++.+.++.++.++..+..|+..++..+..+.+++++++|+.++++.+++ ++
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3333322222 22345677787888899999999999999999999999999999999999999999999987652 21
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEE
Q 000560 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1421)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~ 656 (1421)
.....+.......|+++|++|+|+.. .++.|+| ||++++||+++|+|+||||||||+++|+|+++|++|++ .
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 523 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-L 523 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-E
Confidence 11111111223569999999999753 3578999 99999999999999999999999999999999999997 7
Q ss_pred ECC-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
++| .++||||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 776 5899999999999999999999986 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecC
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1421)
||||||++||||++++|++++||||||+||+++++++.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999999999999999888764 566667899999999999999999999999999999999
Q ss_pred chhhhh
Q 000560 803 YEDLIA 808 (1421)
Q Consensus 803 ~~~l~~ 808 (1421)
++|+++
T Consensus 683 ~~eLl~ 688 (694)
T TIGR03375 683 KDQVLE 688 (694)
T ss_pred HHHHHH
Confidence 999876
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-65 Score=575.68 Aligned_cols=470 Identities=22% Similarity=0.381 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000560 948 AVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL-MSQAA 1026 (1421)
Q Consensus 948 ~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v-~~~~~ 1026 (1421)
..++...+..+-+.+-.+.|.++....+.|.-+..+|-+..-...-..-++..+-..+...+-.++.+....++ ...++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34556667777778888889999999999988877765433333333334444444444444444544443333 34567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1027 WQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106 (1421)
Q Consensus 1027 ~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1106 (1421)
|++..+.+..+++|.++.-......-..+|....+.+...+.-.+++-+.+|++.||.|+.+..++.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 88888887777777665544444445566666777777888899999999999999999999999999999999999998
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q 000560 1107 CGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI 1185 (1421)
Q Consensus 1107 ~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1185 (1421)
.....||++.-..+........... ..-...+..+.|...+.-.+.+++...++.+-..+.++.+.....|++.+..+.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888899887776665544332222 223446678888888888999999999999999999999999999999988877
Q ss_pred CCCCccccCCCCCCCCCC-CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCcc
Q 000560 1186 PSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1421)
Q Consensus 1186 ~~E~~~~~~~~~~~~~wp-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G 1264 (1421)
+.|.. +....++-|| ..|.|.|+||+|.|.+..| +|+|+||++++|+++||||++|+||||+.++|+|+|++++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 65542 2334455674 4688999999999998765 99999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCC
Q 000560 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343 (1421)
Q Consensus 1265 ~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~ 1343 (1421)
+|.|||+||.++..+.||+.||+||||.+||+.|+..|+...+ ..|++|++.|+++++++++|+++|+|+||.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999998764 689999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1344 nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
.||||||||+++||++||+|+||+||||||+||..||+.||.+|++..+++|.++||||++||.++|.|+||++|+|+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 44
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-65 Score=647.96 Aligned_cols=463 Identities=23% Similarity=0.347 Sum_probs=337.7
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|.+++|.... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4689999999996420 12468999 99999999999999999999999999999999999986 4322
Q ss_pred -------------------EEEEEcCCC--cCC-CCcHHHHhccCCC----CCH----HHHHHHHHHhccchhHHhhcCC
Q 000560 660 -------------------KKAYVPQSS--WIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADG 709 (1421)
Q Consensus 660 -------------------~iayv~Q~~--~i~-~~Ti~enI~fg~~----~~~----~~y~~v~~~c~l~~dl~~~~~g 709 (1421)
.+|||+|+| -++ ..||+||+.++.. .+. ++..++++..++...
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 343 5699999988632 222 223333444433210
Q ss_pred CCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhc-c
Q 000560 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-A 786 (1421)
Q Consensus 710 d~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~ 786 (1421)
......+..+|||||||||+||||++.+|+++||||||++||+.+...+.+ ++..+. + |+|||+||||++++.. |
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 112346788999999999999999999999999999999999999888876 444443 3 8999999999999865 9
Q ss_pred CEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCc
Q 000560 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQ 866 (1421)
Q Consensus 787 D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1421)
|+|++|++|+|++.|+++++.......+...... . . +. .
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~---~---~--------------------------~~-------~-- 275 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLA---A---V--------------------------PQ-------L-- 275 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhcCCCChhhhhhhh---c---c--------------------------Cc-------c--
Confidence 9999999999999998877653110000000000 0 0 00 0
Q ss_pred cchhhcCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHH
Q 000560 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILG 946 (1421)
Q Consensus 867 ~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~ 946 (1421)
... .|. .
T Consensus 276 -~~~-~~~----------------------------------------------~------------------------- 282 (623)
T PRK10261 276 -GAM-KGL----------------------------------------------D------------------------- 282 (623)
T ss_pred -ccc-ccc----------------------------------------------c-------------------------
Confidence 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026 (1421)
Q Consensus 947 ~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~ 1026 (1421)
.| ++ .+
T Consensus 283 --------------------------~~---------~~---------------~~------------------------ 288 (623)
T PRK10261 283 --------------------------YP---------RR---------------FP------------------------ 288 (623)
T ss_pred --------------------------CC---------cc---------------cc------------------------
Confidence 00 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1027 WQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106 (1421)
Q Consensus 1027 ~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1106 (1421)
T Consensus 289 -------------------------------------------------------------------------------- 288 (623)
T PRK10261 289 -------------------------------------------------------------------------------- 288 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCC
Q 000560 1107 CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1186 (1421)
Q Consensus 1107 ~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~ 1186 (1421)
. .. ...+
T Consensus 289 ------------------------------~--~~-----------------------------------------~~~~ 295 (623)
T PRK10261 289 ------------------------------L--IS-----------------------------------------LEHP 295 (623)
T ss_pred ------------------------------c--cc-----------------------------------------cccc
Confidence 0 00 0000
Q ss_pred C-CCccccCCCCCCCCCCCCCcEEEEeeeeeeCCC---------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh
Q 000560 1187 S-EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT---------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF 1256 (1421)
Q Consensus 1187 ~-E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~ 1256 (1421)
. +.+..... ..+ +...-++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.
T Consensus 296 ~~~~~~~~~~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 296 AKQEPPIEQD-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371 (623)
T ss_pred cccCcccccc-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 0 00000000 000 011249999999999621 135999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEcCeeCCCCChH---HHhcccEEEccCC--cccc-ccHhhhcCC-C---CCCC----HHHHHHHHHHcC
Q 000560 1257 RVVEPSGGRILIDGVDISMIGLQ---DLRSRLSIIPQDP--MLFQ-GTVRTNLDP-L---EQHS----DQEIWEVINKCH 1322 (1421)
Q Consensus 1257 rl~~p~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~-gTIR~NLdp-~---~~~s----deeI~~aL~~~~ 1322 (1421)
|+.+|++|+|.++|.++...+.. .+|++++||||+| .++. -||++|+.. . +..+ ++++.+.|+.++
T Consensus 372 Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~g 451 (623)
T PRK10261 372 RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451 (623)
T ss_pred cCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999877643 4678899999998 3665 499999852 1 1111 245677888888
Q ss_pred cH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEE
Q 000560 1323 LA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITV 1399 (1421)
Q Consensus 1323 L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~I 1399 (1421)
+. +.. +..+ ..||||||||++|||||+.+|++|||||||++||..+.+.|.+.|++.. .+.|||+|
T Consensus 452 L~~~~~-------~~~~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~i 520 (623)
T PRK10261 452 LLPEHA-------WRYP----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFI 520 (623)
T ss_pred CCHHHh-------hCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 74 332 3333 3599999999999999999999999999999999999999999998754 37899999
Q ss_pred ecChhhhhc-cCEEEEEeCCeeC
Q 000560 1400 AHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1400 AHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++.+.. ||||++|++|+|+
T Consensus 521 sHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 521 SHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE
Confidence 999999876 9999999999984
No 45
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.4e-62 Score=632.42 Aligned_cols=525 Identities=20% Similarity=0.271 Sum_probs=403.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1421)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1421)
++.+|+.++...++.++..++..+.|+++..+++.+......... ...+++++..++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888889999999999999999999988643320111 1011122222222222333333334444555555
Q ss_pred HHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000560 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1421)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1421)
+| ..+|+|.++.+. ....+|+++|.++.|++.+.+.+. .++.+....++++.++++++. ++|..+++.++.
T Consensus 236 lr----~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~ 310 (711)
T TIGR00958 236 IR----EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLIN 310 (711)
T ss_pred HH----HHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 55 555666666543 234899999999999999988764 466666666777766666654 343555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1421)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~ 504 (1421)
+++...+...+.+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777888888888888999999999999999999999999999876666655443332222222211211111
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000560 505 FWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (1421)
Q Consensus 505 ~~~~--p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 582 (1421)
.... -..+.++.++.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++++.+||.+|++.+++.+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 1111 11233455677777788899999999999999999999999999999999999999999999876522111111
Q ss_pred CCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--
Q 000560 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1421)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-- 659 (1421)
...+....|+++|++|+|+.+ ++.++|+| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~~ 544 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVP 544 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEE
Confidence 111223469999999999864 34679999 99999999999999999999999999999999999997 7776
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
+++||||+|+++++||||||.+|.+ .++++..++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 5799999999999999999999965 5678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
|++||||++++|+|++||||||+||+++.+.+.+ ....+++|+|+|||+++.+..||+|++|++|+|+++|+++|++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999999999999999999999888876 2234689999999999999999999999999999999999998
Q ss_pred h
Q 000560 808 A 808 (1421)
Q Consensus 808 ~ 808 (1421)
+
T Consensus 702 ~ 702 (711)
T TIGR00958 702 E 702 (711)
T ss_pred h
Confidence 7
No 46
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-64 Score=633.54 Aligned_cols=430 Identities=21% Similarity=0.313 Sum_probs=328.1
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4889999999853 358899 99999999999999999999999999999999999997 6654
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCCCC----------CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~~~----------~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++ +.|++||+.++... +. ++.++.++.+++. ...+.+..
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-----------VDLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-----------CCcccchh
Confidence 389999998765 46999999886421 11 1122233333322 12345678
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+|||||||||+||||++.+|+++||||||++||+.+...+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999888876443333358999999999999865 9999999999999
Q ss_pred EecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHH
Q 000560 799 QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWT 878 (1421)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 878 (1421)
+.|+++++... . . .. .
T Consensus 225 ~~g~~~~~~~~-~--~---~~------------------------------~---------------------------- 240 (510)
T PRK09700 225 CSGMVSDVSND-D--I---VR------------------------------L---------------------------- 240 (510)
T ss_pred eecchhhCCHH-H--H---HH------------------------------H----------------------------
Confidence 88876554320 0 0 00 0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000560 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958 (1421)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 958 (1421)
..+.
T Consensus 241 --------~~~~-------------------------------------------------------------------- 244 (510)
T PRK09700 241 --------MVGR-------------------------------------------------------------------- 244 (510)
T ss_pred --------hcCC--------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1421)
Q Consensus 959 s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~ 1038 (1421)
+
T Consensus 245 ---------------~---------------------------------------------------------------- 245 (510)
T PRK09700 245 ---------------E---------------------------------------------------------------- 245 (510)
T ss_pred ---------------C----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 000560 1039 ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRIN 1118 (1421)
Q Consensus 1039 ~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1118 (1421)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCC
Q 000560 1119 LLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198 (1421)
Q Consensus 1119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1198 (1421)
.. .+ +...+... .+
T Consensus 246 ---------------------~~-----------------------------------~~---~~~~~~~~-------~~ 259 (510)
T PRK09700 246 ---------------------LQ-----------------------------------NR---FNAMKENV-------SN 259 (510)
T ss_pred ---------------------cc-----------------------------------cc---cccccccc-------cc
Confidence 00 00 00000000 00
Q ss_pred CCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh
Q 000560 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278 (1421)
Q Consensus 1199 ~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l 1278 (1421)
+ +....++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 260 ~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 260 L---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred C---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH
Confidence 0 0112599999999773 28999999999999999999999999999999999999999999999999876543
Q ss_pred -HHHhcccEEEccCC---ccccc-cHhhhcCCCCC------------CC----HHHHHHHHHHcCcHHHHHhcccccCcc
Q 000560 1279 -QDLRSRLSIIPQDP---MLFQG-TVRTNLDPLEQ------------HS----DQEIWEVINKCHLAEIVRQDQRLLDAP 1337 (1421)
Q Consensus 1279 -~~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~ 1337 (1421)
+.+|++++|+||++ .+|.+ |+++|+..... .+ .+++.+++++.++. ++..+.+
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ 406 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQN 406 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCc
Confidence 45788999999984 57765 99999864211 01 12344556655542 1223444
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEE
Q 000560 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVL 1415 (1421)
Q Consensus 1338 v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL 1415 (1421)
++ .||||||||++|||||+++|+||||||||++||..+...+.+.|++.. ++.|||+|||+++.+.. ||||++|
T Consensus 407 ~~----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 407 IT----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred cc----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 44 599999999999999999999999999999999999999999998753 47899999999998864 9999999
Q ss_pred eCCeeC
Q 000560 1416 DEGKLK 1421 (1421)
Q Consensus 1416 ~~G~Iv 1421 (1421)
++|+++
T Consensus 483 ~~G~i~ 488 (510)
T PRK09700 483 CEGRLT 488 (510)
T ss_pred ECCEEE
Confidence 999974
No 47
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.7e-62 Score=610.32 Aligned_cols=541 Identities=23% Similarity=0.284 Sum_probs=444.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1421)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1421)
+-++..++-+|+.+.-..+..++..++..+.|++.+.++|.+--..+ ...=.+++.++.+..+.+.+....-.|...
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666678888888888888999999999999999997754432 122445666777777788777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000560 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1421)
Q Consensus 344 ~~g~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l 419 (1421)
+++.|+...+...+|++.|+++.. .|++|++++.++ |.++|.+++.. +-.+..-.+-.++.+++++..=+ +-++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~-~L~l 297 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW-KLTL 297 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999854 459999999987 89999998753 22222222222333334444444 7778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1421)
Q Consensus 420 ~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~ 499 (1421)
.+++.+++.+.+..++.+..++.-++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.+......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999988876666665544444443
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000560 500 AIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1421)
Q Consensus 500 ~~~~~~~~~p~~--v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1421)
.........+.+ +.+++||++..+++.+|.|..+++-.+...+..|+..+.+....+.+++++.+|+.+.++.|.+.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 333222222222 345789999999999999999999999999999999999999999999999999999999876222
Q ss_pred CCC-CCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEE
Q 000560 578 PIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1421)
Q Consensus 578 ~~~-~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi 655 (1421)
... .......+..|+++|++|+|+.+ +.++|+| |++|++||.+||+|+||||||||+|.|+|.++|.+|++
T Consensus 458 ~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I- 530 (709)
T COG2274 458 GDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI- 530 (709)
T ss_pred cccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-
Confidence 111 12223345689999999999876 3479999 99999999999999999999999999999999999997
Q ss_pred EECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCH-HHHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 656 ~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~-~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++| .++||+|++.+|+|||+|||.++.|... +...++++..+.++++..+|.|.+|.+||+|.+|
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L 610 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence 8877 4799999999999999999999998654 5555566666789999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEec
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1421)
|||||||++||||++++|+|+||||||||||+++.+.+.++ +.....|+|+|+|||+++.+..||+|+||++|+|+++|
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 99999999999999999999999999999999998888775 45566789999999999999999999999999999999
Q ss_pred CchhhhhhhhhHHHHHH
Q 000560 802 KYEDLIADQNSELVRQM 818 (1421)
Q Consensus 802 ~~~~l~~~~~~~~~~~~ 818 (1421)
+++|+++ .++.+.++.
T Consensus 690 s~~ell~-~~g~y~~l~ 705 (709)
T COG2274 690 SHEELLA-QGGLYARLY 705 (709)
T ss_pred CHHHHHH-hcChHHHHH
Confidence 9999998 455555554
No 48
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-64 Score=631.33 Aligned_cols=430 Identities=23% Similarity=0.383 Sum_probs=327.8
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC--CCCcEEEECC-------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~vi~~~g------- 659 (1421)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 5899999999953 368999 999999999999999999999999999999986 79987 6654
Q ss_pred -------EEEEEcCCCcCC-CCcHHHHhccCCCC------CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 -------~iayv~Q~~~i~-~~Ti~enI~fg~~~------~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|++.++ +.|++||+.++... +.+ +.+++++..++. .....+..+|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNL 144 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhC
Confidence 389999998765 46999999987532 111 122222222221 1234567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
|||||||++||||++.+|+++||||||++||+.....+.+.+.+...+|+|+|++|||++++.. ||+|++|++|++++.
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 9999999999999999999999999999999998888876443333358999999999999865 999999999999987
Q ss_pred cCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHH
Q 000560 801 GKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVY 880 (1421)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 880 (1421)
|+.+++... .. .
T Consensus 225 ~~~~~~~~~---~~---~-------------------------------------------------------------- 236 (506)
T PRK13549 225 RPAAGMTED---DI---I-------------------------------------------------------------- 236 (506)
T ss_pred cccccCCHH---HH---H--------------------------------------------------------------
Confidence 754332110 00 0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000560 881 SAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960 (1421)
Q Consensus 881 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 960 (1421)
... .
T Consensus 237 ----~~~------------------------------~------------------------------------------ 240 (506)
T PRK13549 237 ----TMM------------------------------V------------------------------------------ 240 (506)
T ss_pred ----HHh------------------------------h------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGIS 1040 (1421)
Q Consensus 961 ~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~ 1040 (1421)
T Consensus 241 -------------------------------------------------------------------------------- 240 (506)
T PRK13549 241 -------------------------------------------------------------------------------- 240 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 000560 1041 IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1120 (1421)
Q Consensus 1041 ~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1120 (1421)
+
T Consensus 241 ------------------------------------------~------------------------------------- 241 (506)
T PRK13549 241 ------------------------------------------G------------------------------------- 241 (506)
T ss_pred ------------------------------------------C-------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCC
Q 000560 1121 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSP 1200 (1421)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1200 (1421)
. .. .+ . .|.++ ++
T Consensus 242 ----------------~-~~------------------------------------~~---~--~~~~~--------~~- 254 (506)
T PRK13549 242 ----------------R-EL------------------------------------TA---L--YPREP--------HT- 254 (506)
T ss_pred ----------------c-Cc------------------------------------cc---c--ccccc--------cC-
Confidence 0 00 00 0 00000 00
Q ss_pred CCCCCCcEEEEeeeeeeCC-CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-CCccEEEEcCeeCCCCCh
Q 000560 1201 EWPSSGKIELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGRILIDGVDISMIGL 1278 (1421)
Q Consensus 1201 ~wp~~g~I~~~nvs~~Y~~-~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-p~~G~I~IDG~dI~~i~l 1278 (1421)
+....|+++|++++|+. +...+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+.
T Consensus 255 --~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 255 --IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred --CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH
Confidence 11124899999999952 22359999999999999999999999999999999999998 599999999999875543
Q ss_pred -HHHhcccEEEccCC---cccc-ccHhhhcCCC--CC------CCH----HHHHHHHHHcCcHHHHHhcccccCccccCC
Q 000560 1279 -QDLRSRLSIIPQDP---MLFQ-GTVRTNLDPL--EQ------HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341 (1421)
Q Consensus 1279 -~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~ 1341 (1421)
+..|.+++|+||+| .+|. -|+.+|+... .. .+. +++.++++++++.+ +..|.++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--- 403 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELAI--- 403 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCccccc---
Confidence 44677899999996 3564 5999999631 11 111 23555666665521 1123344
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1342 G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
..||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+
T Consensus 404 -~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 404 -ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999998753 47899999999999865 99999999999
Q ss_pred eC
Q 000560 1420 LK 1421 (1421)
Q Consensus 1420 Iv 1421 (1421)
++
T Consensus 483 i~ 484 (506)
T PRK13549 483 LK 484 (506)
T ss_pred EE
Confidence 74
No 49
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.4e-63 Score=676.11 Aligned_cols=243 Identities=22% Similarity=0.294 Sum_probs=196.7
Q ss_pred HHHHHHHhhhHHHHHHHhh--cCCCCCccccCCCCCCCCCCCCC--cEEEEeeeeeeC--CCCCcceeeeeEEeeCCcEE
Q 000560 1165 NLCNVENKMISVERILQFT--NIPSEAPLVIKNSRPSPEWPSSG--KIELENLLVQYN--PTLPMVLKGITCTFPGEKKI 1238 (1421)
Q Consensus 1165 ~~~~le~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~~~nvs~~Y~--~~~~~vL~~is~~I~~Gekv 1238 (1421)
...+.|+++.++||..++. +.+.|.+.......++. ..| .++++||+++|+ ++.+.+|+|||++++|||++
T Consensus 716 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 792 (1394)
T TIGR00956 716 AGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLT 792 (1394)
T ss_pred cccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEE
Confidence 3456777888999998863 34444432222111221 134 379999999985 33457999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCC---CCccEEEEcCeeCCCCChHHHhcccEEEccCCc-cccccHhhhcCCC------CC
Q 000560 1239 GVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQGTVRTNLDPL------EQ 1308 (1421)
Q Consensus 1239 gIVGrTGSGKSTLi~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~gTIR~NLdp~------~~ 1308 (1421)
||+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++. ++..||||||+.. .+
T Consensus 793 aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~ 868 (1394)
T TIGR00956 793 ALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKS 868 (1394)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999999998 78999999999985 358899999999875 4567999999731 12
Q ss_pred CCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC-EEEEeccCCCCCHHHHHHH
Q 000560 1309 HSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR-ILVLDEATASIDTATDNVI 1383 (1421)
Q Consensus 1309 ~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~-ILiLDEaTsslD~~Td~~I 1383 (1421)
.+++ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||+.+...|
T Consensus 869 ~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i 941 (1394)
T TIGR00956 869 VSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941 (1394)
T ss_pred CCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHH
Confidence 3443 3567777777654 36889998888999999999999999999997 9999999999999999999
Q ss_pred HHHHHHH-cCCcEEEEEecChhhh--hccCEEEEEeCC-eeC
Q 000560 1384 QQTIREE-TSRCTVITVAHRIPTV--IDNDLVLVLDEG-KLK 1421 (1421)
Q Consensus 1384 q~~I~~~-~~~~TVI~IAHRl~ti--~~~DrIlvL~~G-~Iv 1421 (1421)
++.|++. .+++|||+++|+++.. ..||+|++|++| +++
T Consensus 942 ~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 942 CKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 9999986 4689999999999974 569999999997 874
No 50
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-64 Score=632.63 Aligned_cols=436 Identities=27% Similarity=0.406 Sum_probs=330.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g---- 659 (1421)
.++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996320 12468999 999999999999999999999999999999986 68986 4433
Q ss_pred -------------EEEEEcCCCc--CC-CCcHHHHhccCC----CCCH----HHHHHHHHHhccchhHHhhcCCCCcccc
Q 000560 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1421)
Q Consensus 660 -------------~iayv~Q~~~--i~-~~Ti~enI~fg~----~~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig 715 (1421)
.++|++|+|. +. ..|+++|+.++. .... ++.+++++.+++.... ....
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 4899999984 33 459999987431 1121 2334445545443210 0123
Q ss_pred CCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEE
Q 000560 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVM 792 (1421)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l 792 (1421)
.+..+|||||||||+||||++.+|+++||||||++||+.....+.+ ++..+ . .++|+|+||||++++.. ||+|++|
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 5678999999999999999999999999999999999999888876 44443 2 37999999999999865 9999999
Q ss_pred eCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhc
Q 000560 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1421)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1421)
++|++++.|+++++..... ..
T Consensus 231 ~~G~i~~~g~~~~~~~~~~-------------------------------------~~---------------------- 251 (529)
T PRK15134 231 QNGRCVEQNRAATLFSAPT-------------------------------------HP---------------------- 251 (529)
T ss_pred ECCEEEEeCCHHHHhhCCC-------------------------------------CH----------------------
Confidence 9999998887655432000 00
Q ss_pred CcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+....
T Consensus 252 ----------~~~~~----------------------------------------------------------------- 256 (529)
T PRK15134 252 ----------YTQKL----------------------------------------------------------------- 256 (529)
T ss_pred ----------HHHHH-----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
T Consensus 257 -------------------------------------------------------------------------------- 256 (529)
T PRK15134 257 -------------------------------------------------------------------------------- 256 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
+ . .
T Consensus 257 --------------~-~---------~----------------------------------------------------- 259 (529)
T PRK15134 257 --------------L-N---------S----------------------------------------------------- 259 (529)
T ss_pred --------------H-H---------h-----------------------------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccc
Q 000560 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1421)
.+ + .+...+
T Consensus 260 ----------------------~~-----------------------------------------~------~~~~~~-- 268 (529)
T PRK15134 260 ----------------------EP-----------------------------------------S------GDPVPL-- 268 (529)
T ss_pred ----------------------Cc-----------------------------------------c------cccccc--
Confidence 00 0 000000
Q ss_pred cCCCCCCCCCCCCCcEEEEeeeeeeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000560 1193 IKNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1421)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~ 1263 (1421)
++ +....|+++|++++|+. +...+|+|+||+|++||++||+|+||||||||+++|.|++ |++
T Consensus 269 -----~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~ 339 (529)
T PRK15134 269 -----PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQ 339 (529)
T ss_pred -----CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCC
Confidence 00 01124899999999952 1245999999999999999999999999999999999998 489
Q ss_pred cEEEEcCeeCCCCChHH---HhcccEEEccCC--cccc-ccHhhhcCCC---C--CCC----HHHHHHHHHHcCcH-HHH
Q 000560 1264 GRILIDGVDISMIGLQD---LRSRLSIIPQDP--MLFQ-GTVRTNLDPL---E--QHS----DQEIWEVINKCHLA-EIV 1327 (1421)
Q Consensus 1264 G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~-gTIR~NLdp~---~--~~s----deeI~~aL~~~~L~-~~i 1327 (1421)
|+|.+||.++...+.++ +|++++|+||+| .+|. .|+++|+... . ..+ ++++.++++..++. +..
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 419 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR 419 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999998776544 477899999998 3665 4999999631 1 111 24566777777774 222
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhh
Q 000560 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1405 (1421)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~t 1405 (1421)
+.++ .+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.
T Consensus 420 -------~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 420 -------HRYP----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred -------hcCC----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 2233 4699999999999999999999999999999999999999999999764 37899999999999
Q ss_pred hhc-cCEEEEEeCCeeC
Q 000560 1406 VID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1406 i~~-~DrIlvL~~G~Iv 1421 (1421)
+.. ||+|++|++|+|+
T Consensus 489 ~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 489 VRALCHQVIVLRQGEVV 505 (529)
T ss_pred HHHhcCeEEEEECCEEE
Confidence 875 9999999999974
No 51
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.9e-64 Score=624.89 Aligned_cols=430 Identities=24% Similarity=0.364 Sum_probs=324.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC--CCCcEEEECC--------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~vi~~~g-------- 659 (1421)
++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 688999999853 358999 999999999999999999999999999999986 79987 6654
Q ss_pred ------EEEEEcCCCcCC-CCcHHHHhccCCCC-------CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 ------~iayv~Q~~~i~-~~Ti~enI~fg~~~-------~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++... ....+..+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD----------NVTRPVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC----------cccCchhhC
Confidence 389999998765 46999999987432 111 12223333322110 012346789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
|||||||++||||++.+|+++||||||++||+.....+.+.+.+-..+|+|||++|||++++.. ||+|++|++|+++..
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999999999888876443333458999999999999875 999999999999865
Q ss_pred cCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHH
Q 000560 801 GKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVY 880 (1421)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 880 (1421)
|+.+++... .
T Consensus 223 ~~~~~~~~~----------------------------------------~------------------------------ 232 (500)
T TIGR02633 223 KDMSTMSED----------------------------------------D------------------------------ 232 (500)
T ss_pred cCcccCCHH----------------------------------------H------------------------------
Confidence 532211000 0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000560 881 SAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960 (1421)
Q Consensus 881 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 960 (1421)
.+... .
T Consensus 233 --~~~~~------------------------------~------------------------------------------ 238 (500)
T TIGR02633 233 --IITMM------------------------------V------------------------------------------ 238 (500)
T ss_pred --HHHHH------------------------------h------------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGIS 1040 (1421)
Q Consensus 961 ~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~ 1040 (1421)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T TIGR02633 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 000560 1041 IWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1120 (1421)
Q Consensus 1041 ~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1120 (1421)
+
T Consensus 239 ------------------------------------------~------------------------------------- 239 (500)
T TIGR02633 239 ------------------------------------------G------------------------------------- 239 (500)
T ss_pred ------------------------------------------C-------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCC
Q 000560 1121 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSP 1200 (1421)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1200 (1421)
. .. ++ ..+.++ .+
T Consensus 240 ----------------~-~~------------------------------------~~-----~~~~~~-------~~-- 252 (500)
T TIGR02633 240 ----------------R-EI------------------------------------TS-----LYPHEP-------HE-- 252 (500)
T ss_pred ----------------c-cc------------------------------------cc-----cccccc-------cC--
Confidence 0 00 00 000000 00
Q ss_pred CCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-CccEEEEcCeeCCCCCh
Q 000560 1201 EWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGVDISMIGL 1278 (1421)
Q Consensus 1201 ~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-~~G~I~IDG~dI~~i~l 1278 (1421)
+..-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+.
T Consensus 253 --~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 253 --IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred --CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH
Confidence 011248999999999432 23599999999999999999999999999999999999995 89999999999875443
Q ss_pred -HHHhcccEEEccCC---cccc-ccHhhhcCCCC-----C---CC----HHHHHHHHHHcCcHHHHHhcccccCccccCC
Q 000560 1279 -QDLRSRLSIIPQDP---MLFQ-GTVRTNLDPLE-----Q---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341 (1421)
Q Consensus 1279 -~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~~-----~---~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~ 1341 (1421)
..+|++++++||++ .+|. -|+++|+.... . .. .+++.++++++++.+ .-.|.++
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--- 401 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI--- 401 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc---
Confidence 56788999999996 3665 49999997421 1 11 123556666665421 1134444
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1342 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1342 G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
..||||||||++|||||+++|++|||||||++||+.+...+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|+
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 3599999999999999999999999999999999999999999998753 47899999999999875 99999999999
Q ss_pred eC
Q 000560 1420 LK 1421 (1421)
Q Consensus 1420 Iv 1421 (1421)
++
T Consensus 481 i~ 482 (500)
T TIGR02633 481 LK 482 (500)
T ss_pred EE
Confidence 74
No 52
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.2e-61 Score=609.47 Aligned_cols=538 Identities=19% Similarity=0.228 Sum_probs=430.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1421)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 346 (1421)
+.+++.+++.+++..++.++..++....|++++.+++..-.... ... -+.+++++++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSV-LWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999999999998875543222 111 122232333444444444444455667777
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000560 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1421)
Q Consensus 347 ~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1421)
.++...+...+|+|.++.+.. ..+.|+++|.++.|++++.++.. .+..++...+.+++++.+++. ++|+.+++.+
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~l 161 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 888888888889998877643 23899999999999999998764 455566556666666665554 3435566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1421)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~ 502 (1421)
+++++.+.+...+.++.++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888899999999999999999999999999999999999999888888776655554444333333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000560 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1421)
Q Consensus 503 ~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1421)
.+...... .+.++.++.+....+.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 22222222 2234556777777888999999999999999999999999999999999999999999998765322111
Q ss_pred CCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC
Q 000560 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1421)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g 659 (1421)
. +.......|+++|++|+|++. +.+.|+| |+++++||+++|+|+||||||||+++|+|.++|.+|++ .++|
T Consensus 322 ~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~g 393 (571)
T TIGR02203 322 R-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDG 393 (571)
T ss_pred C-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECC
Confidence 1 111123469999999999754 3578999 99999999999999999999999999999999999997 7776
Q ss_pred -------------EEEEEcCCCcCCCCcHHHHhccCC--CCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 -------------~iayv~Q~~~i~~~Ti~enI~fg~--~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++||||+|++|++|++|||.++. +.++++.+++++.|++++++..+|+|.+|.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 479999999999999999999996 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||++||||++++|+|++||||||+||+++++++.+. +....+++|+|+|||+.+.+..||+|++|++|++++.|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999998765 45556789999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHH
Q 000560 805 DLIADQNSELVRQM 818 (1421)
Q Consensus 805 ~l~~~~~~~~~~~~ 818 (1421)
++.+ .+..+.+..
T Consensus 553 ~l~~-~~~~~~~~~ 565 (571)
T TIGR02203 553 ELLA-RNGLYAQLH 565 (571)
T ss_pred HHHH-cCCHHHHHH
Confidence 9987 344454443
No 53
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.7e-64 Score=623.31 Aligned_cols=423 Identities=23% Similarity=0.376 Sum_probs=324.1
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4889999999853 368999 99999999999999999999999999999999999997 5654
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCCCC-------CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~~~-------~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.++|++|++.++ +.|++||+.++... +.. +.+++++.+++.. ....+..+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCC
Confidence 379999998665 56999999987432 111 1222333333211 1235678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||||||++||||+..+|+++||||||++||+.+...+.+.+.....+++|+|++|||++++.. ||+|++|++|+++..|
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999888876433322357899999999999865 9999999999998876
Q ss_pred CchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000560 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1421)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1421)
+.+++..+ .. . +
T Consensus 224 ~~~~~~~~---~~---~-------------------------------~------------------------------- 235 (501)
T PRK10762 224 EVADLTED---SL---I-------------------------------E------------------------------- 235 (501)
T ss_pred CcCcCCHH---HH---H-------------------------------H-------------------------------
Confidence 54332110 00 0 0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1421)
Q Consensus 882 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1421)
.. +.
T Consensus 236 ----~~-----------------------------~~------------------------------------------- 239 (501)
T PRK10762 236 ----MM-----------------------------VG------------------------------------------- 239 (501)
T ss_pred ----Hh-----------------------------cC-------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1421)
Q Consensus 962 l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~ 1041 (1421)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 000560 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLF 1121 (1421)
Q Consensus 1042 ~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1121 (1421)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCC
Q 000560 1122 NFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPE 1201 (1421)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~ 1201 (1421)
. +... ..|. .+ .+
T Consensus 240 ---------------~----------------------------------------~~~~--~~~~-~~-------~~-- 252 (501)
T PRK10762 240 ---------------R----------------------------------------KLED--QYPR-LD-------KA-- 252 (501)
T ss_pred ---------------C----------------------------------------Cccc--cccc-cc-------cC--
Confidence 0 0000 0000 00 00
Q ss_pred CCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh-HH
Q 000560 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QD 1280 (1421)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l-~~ 1280 (1421)
|..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.
T Consensus 253 -~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 253 -PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred -CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 1112489999984 27999999999999999999999999999999999999999999999999987665 34
Q ss_pred HhcccEEEccCC---cccc-ccHhhhcCCCC-----C----CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCC
Q 000560 1281 LRSRLSIIPQDP---MLFQ-GTVRTNLDPLE-----Q----HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343 (1421)
Q Consensus 1281 LR~~i~iIpQdp---~LF~-gTIR~NLdp~~-----~----~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~ 1343 (1421)
+|++++|+||+| .+|. -|+++|+.... . .+ ++++.++++++++.+ +..|.++ .
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~ 394 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQAI----G 394 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCch----h
Confidence 678899999997 3554 59999996311 0 11 223555666655420 1234444 4
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1344 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1344 nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
.||||||||++|||||+.+|++|+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 699999999999999999999999999999999999999999999864 47899999999999865 9999999999974
No 54
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.2e-61 Score=610.21 Aligned_cols=539 Identities=18% Similarity=0.220 Sum_probs=421.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1421)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 346 (1421)
+..++.+++.++...+..++..++..+.|++++.+++.+.+... ... ...++.++++..++..++.....+...+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSV-LKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777788888888889999999887654322 111 122222233344444454444445567778
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000560 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1421)
Q Consensus 347 ~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1421)
.++...+...+|+|.++++.. .++.|+++|.++.|++++.+... .+..++..++.+++.+.+++.. +|+.++..+
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~l 172 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888899999999987653 34899999999999999998653 4555666667777776666643 335555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1421)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~ 502 (1421)
+++++...+...+.+..++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+.........
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667788888888899999999999999999999999999999988877777654433333323222222222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000560 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1421)
Q Consensus 503 ~~~~~~p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1421)
.+..... ..+.++.++.+....+.++.+.+..++.++..+..|+..+...+..+.+++.+++|+.++++.++..+...
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 2111111 22334456666667788999999999999999999999999999999999999999999998765221111
Q ss_pred CCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC
Q 000560 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1421)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g 659 (1421)
.........|+++|++|+|++. ..+.|+| |+++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 333 -~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 404 (582)
T PRK11176 333 -RVIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDG 404 (582)
T ss_pred -cCCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECC
Confidence 1111123469999999999753 3579999 99999999999999999999999999999999999997 7776
Q ss_pred -------------EEEEEcCCCcCCCCcHHHHhccCCC--CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 -------------~iayv~Q~~~i~~~Ti~enI~fg~~--~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++||||+|.++++||+|||.+|.+ .++++++++++.+++.++++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 4699999999999999999999863 6888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||++||||++++|++++|||||||||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765 45555789999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHH
Q 000560 805 DLIADQNSELVRQMK 819 (1421)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1421)
++.+ .+..+.++..
T Consensus 564 ~l~~-~~~~y~~l~~ 577 (582)
T PRK11176 564 ELLA-QNGVYAQLHK 577 (582)
T ss_pred HHHh-CCChHHHHHH
Confidence 9998 4556666554
No 55
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.6e-64 Score=626.57 Aligned_cols=209 Identities=26% Similarity=0.413 Sum_probs=169.6
Q ss_pred cEEEEeeeeeeCC---CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc-Ce---eCCCCC--
Q 000560 1207 KIELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID-GV---DISMIG-- 1277 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~---~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ID-G~---dI~~i~-- 1277 (1421)
.++++|++++|.. +...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22469999999999999999999999999999999999999999999996 64 344433
Q ss_pred -hHHHhcccEEEccCCccccc-cHhhhcCC-CC-CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1278 -LQDLRSRLSIIPQDPMLFQG-TVRTNLDP-LE-QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1278 -l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~-~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
...+|++++|+||++.+|.. |+++|+.. .. .. .++++.++++.+++.+.- .++-++.++ ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHH
Confidence 23567789999999988875 99999962 11 11 123466677777764210 000123344 4599999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||||++|++|+++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998764 37899999999999875 9999999999974
No 56
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.8e-63 Score=620.75 Aligned_cols=435 Identities=22% Similarity=0.370 Sum_probs=329.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|.|+++|++|++ .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 358899 99999999999999999999999999999999999997 6654
Q ss_pred -----EEEEEcCCCcCCC-CcHHHHhccCCCCCH---HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~-~Ti~enI~fg~~~~~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
.++|++|++.++. .|++||+.++..... ++.++.++..++.. ....+..+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHH
Confidence 3799999987654 699999998754322 23334444444321 123567899999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhhh
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIAD 809 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1421)
||||++.+|+++||||||++||+.....+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|+++++..+
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 9999999999999999999999999888876543333358999999999999865 999999999999999887765431
Q ss_pred hhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhhh
Q 000560 810 QNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYK 889 (1421)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~ 889 (1421)
. ..+... . . .. .+ .
T Consensus 231 ~---~~~~~~---~--------------------------~----~~-----~~----------~--------------- 244 (510)
T PRK15439 231 D---IIQAIT---P--------------------------A----AR-----EK----------S--------------- 244 (510)
T ss_pred H---HHHHHh---C--------------------------c----cc-----cc----------c---------------
Confidence 0 000000 0 0 00 00 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1421)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 969 (1421)
...
T Consensus 245 ------------------------------~~~----------------------------------------------- 247 (510)
T PRK15439 245 ------------------------------LSA----------------------------------------------- 247 (510)
T ss_pred ------------------------------ccc-----------------------------------------------
Confidence 000
Q ss_pred HhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1421)
Q Consensus 970 ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~ 1049 (1421)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000560 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL 1129 (1421)
Q Consensus 1050 ~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~ 1129 (1421)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEE
Q 000560 1130 IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1421)
Q Consensus 1130 ~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1209 (1421)
.++. .+ ..|...+ .++ +..-.|+
T Consensus 248 ----------------------------------------------~~~~-~~-~~~~~~~------~~~---~~~~~l~ 270 (510)
T PRK15439 248 ----------------------------------------------SQKL-WL-ELPGNRR------QQA---AGAPVLT 270 (510)
T ss_pred ----------------------------------------------cccc-cc-ccccccc------ccC---CCCceEE
Confidence 0000 00 0000000 000 0112489
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-HhcccEEE
Q 000560 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSII 1288 (1421)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~iI 1288 (1421)
++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|.+++|+
T Consensus 271 ~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 271 VEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 999983 1699999999999999999999999999999999999999999999999998776654 46789999
Q ss_pred ccCC---ccccc-cHhhhcCCC-----CC--CC---HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1289 PQDP---MLFQG-TVRTNLDPL-----EQ--HS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1289 pQdp---~LF~g-TIR~NLdp~-----~~--~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
||++ .+|.. |+++|+... .. .. ++++.++++..++. ++..+.++ ..||||||||++
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgG~kqrl~ 413 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA----RTLSGGNQQKVL 413 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc----ccCCcHHHHHHH
Confidence 9996 36654 999998421 10 01 12344555555542 12234444 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999998753 47899999999999976 9999999999974
No 57
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-63 Score=620.95 Aligned_cols=190 Identities=18% Similarity=0.331 Sum_probs=163.9
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEccCCc--ccc-ccHhhhcCCCC--CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1286 SIIPQDPM--LFQ-GTVRTNLDPLE--QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1286 ~iIpQdp~--LF~-gTIR~NLdp~~--~~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+|+||++. ++. .|+++|+.... ...++++.++|+..++. +. .|.++ .+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~----~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD-------IKKSV----KVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-------hcCcc----cccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986432 23456678888888873 32 23333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999875 4699999999999875 9999999999873
No 58
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-60 Score=619.72 Aligned_cols=531 Identities=22% Similarity=0.267 Sum_probs=418.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1421)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 347 (1421)
..++.+++.++...++.++..++..+.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888999999999999999987643322 111 2233334444445555555555566778888
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000560 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1421)
Q Consensus 348 riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~--h~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1421)
++...+...+|+|.++++.. .+++|+++|.++ |++.+.++.... ..+...+. +++.+.+++. ++|+.++..+
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~l~li~l 302 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVR-QNMLLFLLSL 302 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhHHHHHHHH
Confidence 99999999999999988753 459999999998 999999876432 22223333 3333333433 2325555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000560 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC---- 498 (1421)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~---- 498 (1421)
+++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+.....
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (708)
T TIGR01193 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677788888899999999999999999999999999999999999988887766554443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 000560 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1421)
Q Consensus 499 ~~~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~ 577 (1421)
++..++.... .+.++++|++.+..+.+|.+.++++..++..+..|+..+...+..+.+++++++|+.++++.+++ ++
T Consensus 383 ~~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 383 AIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222 23355678888888999999999999999999999999999999999999999999999987652 21
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEE
Q 000560 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1421)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~ 656 (1421)
.....+..+....|+++|++|+|+.+ .+.|+| |++|++||.++|+|+||||||||+++|+|+++|++|++ .
T Consensus 461 ~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I-~ 532 (708)
T TIGR01193 461 KKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-L 532 (708)
T ss_pred cccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-E
Confidence 11111112224579999999999743 478999 99999999999999999999999999999999999997 7
Q ss_pred ECC-------------EEEEEcCCCcCCCCcHHHHhccCC--CCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~--~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
++| .++||||+|++|++||+|||.+|. ..++++..++++.++++++++.+|+|.+|.+|++|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 877 479999999999999999999983 46678889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEec
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1421)
|||||||++||||++++|+|++||||||+||+++.+++.+.+. . .+++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-N-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-H-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999988877654 3 3689999999999999999999999999999999
Q ss_pred CchhhhhhhhhHHHHH
Q 000560 802 KYEDLIADQNSELVRQ 817 (1421)
Q Consensus 802 ~~~~l~~~~~~~~~~~ 817 (1421)
+++|+++ .+..+.++
T Consensus 691 ~~~~L~~-~~~~y~~l 705 (708)
T TIGR01193 691 SHDELLD-RNGFYASL 705 (708)
T ss_pred CHHHHHh-cCCcHHHH
Confidence 9999987 44444443
No 59
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.9e-60 Score=602.50 Aligned_cols=537 Identities=20% Similarity=0.247 Sum_probs=411.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1421)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 347 (1421)
..++.+++.++...++.++..++..+.|+++..+++.+..... .+......++.++++..++..++.....+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888999999999999999987643222 111111222333444444555555556666778888
Q ss_pred HHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000560 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1421)
Q Consensus 348 riR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~~~h-~~w~~plqi~~al~lL~~~lG~~a~l~gl~ 423 (1421)
++...+...+|+|.++.+. ...++|+++|.++.|++++.++..... .+....+.+++++.+++ .++|+.+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~ 173 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888999999988764 334899999999999999998765432 33333333333333332 244344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000560 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA--- 500 (1421)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~--- 500 (1421)
++.+.+.+.....++.++..++..+..++-.+...|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555666677777777888888889999999999999999999999988887655443332221111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000560 501 -IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1421)
Q Consensus 501 -~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1421)
...++.....++ ++..+.+ ...+.++.+.+++++.++..+..|+..++..+..+.+++.|.+||.++++.++++...
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111 1112223 3466799999999999999999999999999999999999999999999866522111
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC
Q 000560 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1421)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~ 658 (1421)
... ......|+++|++|+|+.+ .+.|+| ||++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 332 ~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~id 401 (592)
T PRK10790 332 DDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-RLD 401 (592)
T ss_pred Ccc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EEC
Confidence 111 1123469999999999743 468999 99999999999999999999999999999999999987 777
Q ss_pred C-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
| .++||||+|.+|++||+|||.+|.+.++++.+++++.+++.++++.+|+|.+|.+|++|.+|||||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 6 379999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchh
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~ 805 (1421)
|||++||||++++|+|+|||||||+||+++.+++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++|
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998888664 455567899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHH
Q 000560 806 LIADQNSELVRQMKA 820 (1421)
Q Consensus 806 l~~~~~~~~~~~~~~ 820 (1421)
+++ .+..+.++...
T Consensus 561 L~~-~~~~y~~l~~~ 574 (592)
T PRK10790 561 LLA-AQGRYWQMYQL 574 (592)
T ss_pred HHh-CCCHHHHHHHH
Confidence 997 56677776654
No 60
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-63 Score=615.05 Aligned_cols=425 Identities=23% Similarity=0.341 Sum_probs=322.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 5889999999963 358999 99999999999999999999999999999999999997 5544
Q ss_pred -----EEEEEcCCCcCCC-CcHHHHhccCCC------CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~-~Ti~enI~fg~~------~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.++|++|++.++. .|++||+.++.. .+. ++.++.++.+++.. ....+..+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCH
Confidence 3899999987765 599999998642 111 12233333333321 12356789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecC
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1421)
|||||++||||++.+|+++||||||++||+.+...+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..++
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999888876544333358999999999999865 99999999999975432
Q ss_pred chhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHH
Q 000560 803 YEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSA 882 (1421)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 882 (1421)
..+... .+ +
T Consensus 224 ~~~~~~----------------------------------------~~------------------~------------- 232 (501)
T PRK11288 224 DMAQVD----------------------------------------RD------------------Q------------- 232 (501)
T ss_pred ccccCC----------------------------------------HH------------------H-------------
Confidence 100000 00 0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 883 FITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRL 962 (1421)
Q Consensus 883 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 962 (1421)
+.... . .
T Consensus 233 ~~~~~------------------------------~-~------------------------------------------ 239 (501)
T PRK11288 233 LVQAM------------------------------V-G------------------------------------------ 239 (501)
T ss_pred HHHHh------------------------------c-C------------------------------------------
Confidence 00000 0 0
Q ss_pred HHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIW 1042 (1421)
Q Consensus 963 ~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~ 1042 (1421)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK11288 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 000560 1043 YQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFN 1122 (1421)
Q Consensus 1043 ~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~ 1122 (1421)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK11288 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCC
Q 000560 1123 FAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEW 1202 (1421)
Q Consensus 1123 ~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~w 1202 (1421)
... ++. .+.++ .+
T Consensus 240 ---------------~~~------------------------------------~~~-----~~~~~-------~~---- 252 (501)
T PRK11288 240 ---------------REI------------------------------------GDI-----YGYRP-------RP---- 252 (501)
T ss_pred ---------------CCc------------------------------------ccc-----ccccc-------cC----
Confidence 000 000 00000 00
Q ss_pred CCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC-hHHH
Q 000560 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDL 1281 (1421)
Q Consensus 1203 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~-l~~L 1281 (1421)
+....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..
T Consensus 253 ~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 253 LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 01125889999842 3899999999999999999999999999999999999999999999999987543 3456
Q ss_pred hcccEEEccCCc---cc-cccHhhhcCCCC--C-------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1282 RSRLSIIPQDPM---LF-QGTVRTNLDPLE--Q-------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1282 R~~i~iIpQdp~---LF-~gTIR~NLdp~~--~-------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
|++++|+||+|. +| ..|+.+|+.... . .. ++++.+.++..++. ++..++++ .+
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~ 396 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLI----MN 396 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCcc----cc
Confidence 789999999973 55 469999986421 0 01 12355566666552 11234454 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||||++|||||+.+|++|||||||++||..+...+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+++
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~ 475 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 47899999999999865 9999999999974
No 61
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.6e-61 Score=602.18 Aligned_cols=467 Identities=17% Similarity=0.204 Sum_probs=360.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHH
Q 000560 934 IFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALI 1013 (1421)
Q Consensus 934 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~ 1013 (1421)
+++.++..++.++..++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++.+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~ 133 (547)
T PRK10522 55 LGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGII 133 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHH
Confidence 333333445666778888889999999999999999999999999999999999999999999987654 4667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccH---HHHHH
Q 000560 1014 QLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---NRFLL 1090 (1421)
Q Consensus 1014 ~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e---~~f~~ 1090 (1421)
.+++.+++++..+|.++++++..+++.+++..++.+..+...+...+..+...+++.|.++|+.+++ ++.+ +.+.+
T Consensus 134 ~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~ 212 (547)
T PRK10522 134 LTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFEN 212 (547)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHH
Confidence 8888899999999999888777766666666666666666666666778899999999999999995 4443 35566
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 1091 RSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF-LVLIILVTL-PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCN 1168 (1421)
Q Consensus 1091 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~ 1168 (1421)
++.+..++..+...... ++......+..+... ..+++.+.. ..+....+..+....+.+.+...+..+...+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~ 288 (547)
T PRK10522 213 EYEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPT 288 (547)
T ss_pred HHhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665554333321 111111111111111 111111111 011122333333333334444566677777888
Q ss_pred HHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCH
Q 000560 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGK 1248 (1421)
Q Consensus 1169 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGK 1248 (1421)
+.....+.+|+.++.+.|.|++. ++..+. |..+.|+++||+|+|+++ +++|+|+||+|+|||++||||+|||||
T Consensus 289 ~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGK 362 (547)
T PRK10522 289 LLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGK 362 (547)
T ss_pred HHHHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCH
Confidence 88999999999998765443211 111111 223579999999999743 469999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHH
Q 000560 1249 STLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1328 (1421)
Q Consensus 1249 STLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~ 1328 (1421)
|||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+.
T Consensus 363 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 363 STLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred HHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh
Confidence 999999999999999999999999999999999999999999999999999999 24678899999999999887764
Q ss_pred hcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhh
Q 000560 1329 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV 1406 (1421)
Q Consensus 1329 ~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti 1406 (1421)
. ++|. .+|.+||||||||++||||++++|+|||||||||+||++|++.|.+.+.+.. +++|+|+||||++++
T Consensus 440 ~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~ 513 (547)
T PRK10522 440 L-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF 513 (547)
T ss_pred c-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH
Confidence 2 4432 1478999999999999999999999999999999999999999999997654 489999999999999
Q ss_pred hccCEEEEEeCCeeC
Q 000560 1407 IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1407 ~~~DrIlvL~~G~Iv 1421 (1421)
..||+|++|++|+++
T Consensus 514 ~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 514 IHADRLLEMRNGQLS 528 (547)
T ss_pred HhCCEEEEEECCEEE
Confidence 999999999999974
No 62
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-62 Score=612.28 Aligned_cols=422 Identities=21% Similarity=0.335 Sum_probs=317.6
Q ss_pred EeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------------
Q 000560 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1421)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------------- 659 (1421)
+|.+++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 567777753 368999 99999999999999999999999999999999999997 6655
Q ss_pred -EEEEEcCCCcCC-CCcHHHHhccCCC-C-----CHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 660 -KKAYVPQSSWIQ-TGTIRENILFGKD-M-----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 660 -~iayv~Q~~~i~-~~Ti~enI~fg~~-~-----~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
.++|++|++.++ +.|++||+.++.. . +.+. .+++++.+++. .....+..+|||||||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHH
Confidence 379999998764 5699999998642 1 1111 12222222221 1234567899999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1421)
||+||||++.+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999888876543333358999999999999865 999999999999987654332
Q ss_pred hhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHH
Q 000560 807 IADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITL 886 (1421)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 886 (1421)
... . .. ..
T Consensus 222 ~~~---~---~~------------------------------------------------------------------~~ 229 (491)
T PRK10982 222 TMD---K---II------------------------------------------------------------------AM 229 (491)
T ss_pred CHH---H---HH------------------------------------------------------------------HH
Confidence 100 0 00 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 887 VYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNM 966 (1421)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l 966 (1421)
.
T Consensus 230 ~------------------------------------------------------------------------------- 230 (491)
T PRK10982 230 M------------------------------------------------------------------------------- 230 (491)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 967 ITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAY 1046 (1421)
Q Consensus 967 ~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~ 1046 (1421)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 000560 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126 (1421)
Q Consensus 1047 y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~ 1126 (1421)
++
T Consensus 231 -----------------------------------~~------------------------------------------- 232 (491)
T PRK10982 231 -----------------------------------VG------------------------------------------- 232 (491)
T ss_pred -----------------------------------hC-------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCC
Q 000560 1127 LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSG 1206 (1421)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g 1206 (1421)
. . + .+ ..+.+. .+ +...
T Consensus 233 ----------~-~---------------------------------~---~~-----~~~~~~-------~~----~~~~ 249 (491)
T PRK10982 233 ----------R-S---------------------------------L---TQ-----RFPDKE-------NK----PGEV 249 (491)
T ss_pred ----------C-C---------------------------------c---cc-----cccccc-------CC----CCCc
Confidence 0 0 0 00 000000 00 1112
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1421)
.|+++|++++|+ .+|+|+||++++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+..+ +|+.+
T Consensus 250 ~i~~~~l~~~~~----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLRQ----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCcccccC----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 589999999852 4899999999999999999999999999999999999999999999999998776543 57789
Q ss_pred EEEccCCc---ccc-ccHhhh-----cCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1286 SIIPQDPM---LFQ-GTVRTN-----LDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1286 ~iIpQdp~---LF~-gTIR~N-----Ldp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
+|+||++. +|. .|+++| +... +..+ ++++.+.++..++. .+.+|.++ .+||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgG 395 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRTQI----GSLSGG 395 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCccccc----ccCCcH
Confidence 99999963 555 466666 3211 1112 12234444444432 11234444 469999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||++||||++++|+||||||||++||+.+...+.+.|++.. ++.|||+|||+++.+.. ||||++|++|+++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999997743 57899999999999865 9999999999974
No 63
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.7e-63 Score=615.16 Aligned_cols=436 Identities=20% Similarity=0.277 Sum_probs=327.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+.. +.|++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSDT--------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCCe--------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 37899999999632 48999 99999999999999999999999999999999999987 5543
Q ss_pred ----EEEEEcCCCcC---------CCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~~i---------~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|++-. +..|++||+.++.. ++++.++.++..++.+. .+.+..+||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHH
Confidence 26899998643 14589999876532 23344555555554321 2356789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||++||||++.+|+++||||||++||+...+.+.+.+.+-..+|+|+|++||+++++.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888876543333357999999999998865 99999999999998887655
Q ss_pred hhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHH
Q 000560 806 LIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFIT 885 (1421)
Q Consensus 806 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 885 (1421)
+.+. . ....... .+ . .
T Consensus 222 ~~~~-~-~~~~~~~-----------------------------~~----~--------~--------------------- 237 (490)
T PRK10938 222 ILQQ-A-LVAQLAH-----------------------------SE----Q--------L--------------------- 237 (490)
T ss_pred Hhcc-h-hhhhhhh-----------------------------hh----c--------c---------------------
Confidence 4320 0 0000000 00 0 0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 886 LVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965 (1421)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ 965 (1421)
. ..
T Consensus 238 --------------------------------~-~~-------------------------------------------- 240 (490)
T PRK10938 238 --------------------------------E-GV-------------------------------------------- 240 (490)
T ss_pred --------------------------------C-cc--------------------------------------------
Confidence 0 00
Q ss_pred HHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQA 1045 (1421)
Q Consensus 966 l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~ 1045 (1421)
+
T Consensus 241 --------~----------------------------------------------------------------------- 241 (490)
T PRK10938 241 --------Q----------------------------------------------------------------------- 241 (490)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 000560 1046 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF 1125 (1421)
Q Consensus 1046 ~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~ 1125 (1421)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCC
Q 000560 1126 FLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS 1205 (1421)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1205 (1421)
.+ + ..++.. .. ..+ +..
T Consensus 242 ---------~~-----------------------------------------~-------~~~~~~--~~-~~~---~~~ 258 (490)
T PRK10938 242 ---------LP-----------------------------------------E-------PDEPSA--RH-ALP---ANE 258 (490)
T ss_pred ---------cC-----------------------------------------c-------cccccc--cc-ccC---CCC
Confidence 00 0 000000 00 000 012
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-CccEEEEcCeeCCC-CChHHHhc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGVDISM-IGLQDLRS 1283 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-~~G~I~IDG~dI~~-i~l~~LR~ 1283 (1421)
..|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.++|.++.. ......|+
T Consensus 259 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 25999999999964 3599999999999999999999999999999999998876 69999999987642 23345788
Q ss_pred ccEEEccCCcccc---ccHhhhcCCC--------CCCC---HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1284 RLSIIPQDPMLFQ---GTVRTNLDPL--------EQHS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~---gTIR~NLdp~--------~~~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
+++++||++.++. .|+++++.+. .... ++++.++++.+++.+. -.|.++ ..|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR------TADAPF----HSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh------hccCch----hhCCHHH
Confidence 9999999986642 4777776421 1111 2356677777777531 123344 4599999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhc--cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID--NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHRl~ti~~--~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+++|++|+|||||++||+.+...+.+.|++..+ + .|||+|+|+++.+.. ||+|++|++|+|+
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999998643 3 479999999999974 7999999999974
No 64
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.3e-60 Score=599.01 Aligned_cols=540 Identities=19% Similarity=0.261 Sum_probs=415.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1421)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1421)
++.+++.+++.+.+..++.++..++..+.|+++..+++.+-.... ... -..++..+++..++..+......+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SGL--LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888899999999999999999987332221 111 11122222333333444445556677788
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000560 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1421)
Q Consensus 346 g~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1421)
+.++...+...+|+|.++.+.. ..+.|+++|.++.|++.+.++.. .+..++...+.++.++++++..-. +.+++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 9999999999999999987543 23889999999999999988753 344444444444444444332222 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1421)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~ 501 (1421)
++.+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444567788888889999999999999999999999999999999988888776655444433332222221
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 000560 502 AFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1421)
Q Consensus 502 ~~~~~~--~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~ 578 (1421)
..+... ....+..+.++.+.+..+.++.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++ +..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 111111 11233444567777778889999999999999999999999999999999999999999999986542 111
Q ss_pred CCC-CCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEE
Q 000560 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1421)
Q Consensus 579 ~~~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~ 656 (1421)
... ....+....|+++|++|+|+.+ +.++.|+| ||++++||+++|+|+||||||||+++|+|+++|.+|++ .
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~ 398 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L 398 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-E
Confidence 111 1111123469999999999854 23578999 99999999999999999999999999999999999997 7
Q ss_pred ECC-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
++| .++|+||+|+++++||+|||.+|.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 776 4799999999999999999999875 46778888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecC
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1421)
||||||++||||++++|++++||||||+||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 9999999999999999999999999999999998877664 555567899999999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHH
Q 000560 803 YEDLIADQNSELVRQ 817 (1421)
Q Consensus 803 ~~~l~~~~~~~~~~~ 817 (1421)
++++.+ ....+.++
T Consensus 558 ~~~l~~-~~~~~~~l 571 (576)
T TIGR02204 558 HAELIA-KGGLYARL 571 (576)
T ss_pred HHHHHH-cCChHHHH
Confidence 999877 44445443
No 65
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-59 Score=592.25 Aligned_cols=521 Identities=20% Similarity=0.226 Sum_probs=409.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1421)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR 350 (1421)
+.+++.++...++.++..++..+.|++++.+++.+-.... ... -+.+++++++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999999999986543221 111 2334445555666666777677777888999999
Q ss_pred HHHHHHHHHHHhccccCCCChHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000560 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1421)
Q Consensus 351 ~~L~~~Iy~K~L~ls~~~~~~G~ivnlms~D~~ri~~~~~~--~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~ 428 (1421)
..+...+|+|.++++.. ..+...+.++.|++++.++... +..+...++.++..++ ++..-+ +.++..++.+++.
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~-~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLV-CFLLHP-WIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHhh-HHHHHHHHHHHHH
Confidence 99999999999998763 3456678889999999987543 3334444444333322 222112 3333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1421)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~ 508 (1421)
..+.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888888999999999999999999999999999999999888776665554444333333332222222
Q ss_pred H--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000560 509 P--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1421)
Q Consensus 509 p--~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1421)
. ..+.++.++.+...++.+|++.+++++.++..+..|+..++..+..+.++++|++||.++++.++..+.... ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCC
Confidence 1 123345677787788899999999999999999999999999999999999999999999987652211111 111
Q ss_pred CCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC------
Q 000560 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1421)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------ 659 (1421)
.+..++++|++|+|+.. +.+.++| |+++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 313 ~~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~ 385 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQW 385 (544)
T ss_pred CCCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhC
Confidence 23469999999999753 3578999 99999999999999999999999999999999999997 7765
Q ss_pred -------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHH
Q 000560 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1421)
Q Consensus 660 -------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1421)
.++||||+|+++++|++|||.++.+ .+++...++++.+++++.++.+|+|.+|.+|++|.+||||||||++|
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 4799999999999999999986654 67788888999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 732 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
|||++++|+++|||||||+||+++++.+.+. +... .+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999998888764 4444 36899999999999888899999999999999999988764
No 66
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-61 Score=606.70 Aligned_cols=471 Identities=22% Similarity=0.316 Sum_probs=323.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC--CEEEEEc
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVP 665 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~--g~iayv~ 665 (1421)
..++++|.+++|+.+ .+.+++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .++ ..++||+
T Consensus 5 ~~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLP 76 (556)
T ss_pred EEEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEe
Confidence 358999999999621 468999 99999999999999999999999999999999999997 554 4799999
Q ss_pred CCCcCCC-CcHHHHhccCCC-CCH--H---------------------HHHHHHHHhc------cchhHHhh-cCCCCcc
Q 000560 666 QSSWIQT-GTIRENILFGKD-MRQ--S---------------------FYEEVLEGCA------LNQDIEMW-ADGDLSV 713 (1421)
Q Consensus 666 Q~~~i~~-~Ti~enI~fg~~-~~~--~---------------------~y~~v~~~c~------l~~dl~~~-~~gd~t~ 713 (1421)
|+|+++. .|++||+.++.. +.. . .+.++.+.+. ..+.++.. ..-....
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 9998865 599999987631 000 0 0111111110 01111110 0000012
Q ss_pred ccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEE
Q 000560 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1421)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l 792 (1421)
...+..+|||||||||+||||++.+|+++|||||||+||+.....+.+ ++... ++|+|+|||+++++.. ||+|++|
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 346778999999999999999999999999999999999998887765 45544 3699999999999876 9999999
Q ss_pred eCCEEE-EecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhh
Q 000560 793 KDGKIE-QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTE 871 (1421)
Q Consensus 793 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 871 (1421)
++|+++ +.|+++++.+.............. . ...
T Consensus 234 ~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------------~-----------------~~~- 268 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLEQKAKRLAQEEKQEA---------------------------A-----------------RQK- 268 (556)
T ss_pred eCCEEEEecCCHHHHHHHHHHHHHHHHHHHH---------------------------H-----------------HHH-
Confidence 999986 889998876521110000000000 0 000
Q ss_pred cCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHH
Q 000560 872 LGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951 (1421)
Q Consensus 872 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1421)
-+.... -|.
T Consensus 269 -----------~~~~~~-----------------------~~~------------------------------------- 277 (556)
T PRK11819 269 -----------ALKREL-----------------------EWV------------------------------------- 277 (556)
T ss_pred -----------HHHHHH-----------------------HHH-------------------------------------
Confidence 000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
T Consensus 278 -------------------------------------------------------------------------------- 277 (556)
T PRK11819 278 -------------------------------------------------------------------------------- 277 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000560 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1421)
Q Consensus 1032 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1421)
++ ++. + + .. +
T Consensus 278 -----------------------~~------~~~---------~----~----~~----~-------------------- 287 (556)
T PRK11819 278 -----------------------RQ------SPK---------A----R----QA----K-------------------- 287 (556)
T ss_pred -----------------------HH------hhh---------h----h----HH----H--------------------
Confidence 00 000 0 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
.+......+|..+. .+.+.+.
T Consensus 288 ---------------------------------------------------------~~~~~~~~~~~~~~--~~~~~~~ 308 (556)
T PRK11819 288 ---------------------------------------------------------SKARLARYEELLSE--EYQKRNE 308 (556)
T ss_pred ---------------------------------------------------------HHHHHHHHHHhhcc--cccccCC
Confidence 00000000111100 0000000
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~ 1271 (1421)
......++...+....|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 385 (556)
T PRK11819 309 TNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE- 385 (556)
T ss_pred CceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 0000001111112335999999999964 3599999999999999999999999999999999999999999999954
Q ss_pred eCCCCChHHHhcccEEEccCC-cccc-ccHhhhcCCCCC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1272 DISMIGLQDLRSRLSIIPQDP-MLFQ-GTVRTNLDPLEQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1272 dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
++ +++|+||++ .++. -|+++|+..... ..+++..++++..++.+. ..+.++ ..
T Consensus 386 ~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~ 445 (556)
T PRK11819 386 TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV----GV 445 (556)
T ss_pred ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch----hh
Confidence 21 699999997 5655 499999864211 123345566777666321 123344 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeC-Cee
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-GKL 1420 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~-G~I 1420 (1421)
||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++
T Consensus 446 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 9999999999999999999999999999999999999999999875 3 499999999998865 999999986 665
No 67
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.2e-59 Score=590.55 Aligned_cols=524 Identities=21% Similarity=0.267 Sum_probs=406.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000560 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1421)
Q Consensus 285 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~l 364 (1421)
++..++..+.|++++.+++.+.+... .... .+.+++.+++..++..++.....+...+.+.++...+...+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHM-TTGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555667789999999997754321 1111 233344444444555555555555666778888888999999999987
Q ss_pred ccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 365 KFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1421)
Q Consensus 365 s~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~ 440 (1421)
+.. ..++|+++|.++.|++.+..... .+..++..++.+++++++++..++|..+++.++++++.+.+...+.++..
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 34899999999999999986653 45666666666555555554456645566666666666666677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 000560 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP--TLVSVITFG 518 (1421)
Q Consensus 441 ~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p--~~v~~~tF~ 518 (1421)
+..++..+..++..+...|.++|+++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999999997777666433322222222222222111111111 122344567
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEEeeEE
Q 000560 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1421)
Q Consensus 519 ~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1421)
.+.+.++.++.+.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+.... +....+..|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 777778889999999999999999999999999999999999999999999987542111110 1111234699999999
Q ss_pred EeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------------EEEEE
Q 000560 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1421)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------------~iayv 664 (1421)
+|+.. ..+.|++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++| .++|+
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99753 3578999 99999999999999999999999999999999999997 7765 37999
Q ss_pred cCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEE
Q 000560 665 PQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1421)
Q Consensus 665 ~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1421)
+|+|+++++|++|||.+|.+ .+++.++++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999964 67788889999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHH
Q 000560 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1421)
Q Consensus 744 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1421)
||||||+||+++.+++.+. +....+++|+|++||+++.++.||+|++|++|++++.|+++++.+ ....+.++...
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~ 549 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRY 549 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHH
Confidence 9999999999999988775 455567899999999999999999999999999999999999987 44556555543
No 68
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-61 Score=606.70 Aligned_cols=470 Identities=22% Similarity=0.315 Sum_probs=324.6
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC--CEEEEEcC
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~--g~iayv~Q 666 (1421)
.++++|++++|+.+ .+.++| ||++++|++++|+||||||||||+++|+|+.+|++|++ .++ ..++|++|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58899999999622 368999 99999999999999999999999999999999999997 565 46999999
Q ss_pred CCcCC-CCcHHHHhccCCCC------------------CH---------HHHHHHHHHhccc---hhHHhh-cCCCCccc
Q 000560 667 SSWIQ-TGTIRENILFGKDM------------------RQ---------SFYEEVLEGCALN---QDIEMW-ADGDLSVV 714 (1421)
Q Consensus 667 ~~~i~-~~Ti~enI~fg~~~------------------~~---------~~y~~v~~~c~l~---~dl~~~-~~gd~t~i 714 (1421)
+|+++ +.|++|||.++... +. .++.+.++.++.. ..++.. ..-.....
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 155 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW 155 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc
Confidence 99886 56999999876310 01 1123333344322 111111 00011113
Q ss_pred cCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEe
Q 000560 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1421)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~ 793 (1421)
+.+..+||||||||++||||++.+|+++||||||++||+++...+.+ .+... ++|+|+|||+++++.. ||+|++|+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEE
Confidence 46778999999999999999999999999999999999998887765 44443 4699999999999876 99999999
Q ss_pred CCEEE-EecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhc
Q 000560 794 DGKIE-QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1421)
Q Consensus 794 ~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1421)
+|+++ +.|+++++.+.............. .
T Consensus 233 ~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------------~---------------------- 263 (552)
T TIGR03719 233 RGRGIPWEGNYSSWLEQKEKRLEQEEKEES---------------------------A---------------------- 263 (552)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHHHHHHH---------------------------H----------------------
Confidence 99975 789998876521110000000000 0
Q ss_pred CcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHH
Q 000560 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1421)
+...+... ..|+.
T Consensus 264 -------~~~~~~~~-----------------------~~~~~------------------------------------- 276 (552)
T TIGR03719 264 -------RQKALKRE-----------------------LEWVR------------------------------------- 276 (552)
T ss_pred -------HHHHHHHH-----------------------HHHHH-------------------------------------
Confidence 00000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v 1032 (1421)
T Consensus 277 -------------------------------------------------------------------------------- 276 (552)
T TIGR03719 277 -------------------------------------------------------------------------------- 276 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
+ .+.. . ++ +.
T Consensus 277 -----------------------~------~~~~---~---------~~---------~~-------------------- 286 (552)
T TIGR03719 277 -----------------------S------SPKA---R---------QA---------KS-------------------- 286 (552)
T ss_pred -----------------------h------hhhh---H---------HH---------HH--------------------
Confidence 0 0000 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccc
Q 000560 1113 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1421)
+......++..+. . +..++..
T Consensus 287 ---------------------------------------------------------~~~~~~~~~~~~~-~-~~~~~~~ 307 (552)
T TIGR03719 287 ---------------------------------------------------------KARLARYEELLSQ-E-FQKRNET 307 (552)
T ss_pred ---------------------------------------------------------HHHHHHHHhhhhh-c-ccccCCC
Confidence 0000000111110 0 0000000
Q ss_pred cCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCee
Q 000560 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1421)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~d 1272 (1421)
.....+...-+.+..++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~ 384 (552)
T TIGR03719 308 AEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T 384 (552)
T ss_pred ceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c
Confidence 000000000011235999999999964 3599999999999999999999999999999999999999999999964 2
Q ss_pred CCCCChHHHhcccEEEccCCc-ccc-ccHhhhcCCCC---CC--CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1273 ISMIGLQDLRSRLSIIPQDPM-LFQ-GTVRTNLDPLE---QH--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1273 I~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~~---~~--sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
+ +++|+||++. ++. -|+++|+.... .. .+.+..++++..++.+. -.+.++ ..|
T Consensus 385 ~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~L 444 (552)
T TIGR03719 385 V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------DQQKKV----GQL 444 (552)
T ss_pred e----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------HhcCch----hhC
Confidence 1 6999999973 554 49999996421 11 13344566666665321 123333 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeC-Cee
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-GKL 1420 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~-G~I 1420 (1421)
|||||||++|||||+.+|++|+|||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++
T Consensus 445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHV 519 (552)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeE
Confidence 999999999999999999999999999999999999999999986 3 489999999999876 999999997 565
No 69
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.4e-59 Score=592.03 Aligned_cols=533 Identities=19% Similarity=0.258 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1421)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1421)
.++.+++.+.+..++.++..++..+.|+++..+++.+..... . +. ++..+++..++..+......+...++..+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I---FP-LLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888899999999999999999987754321 1 11 11111111222222233334456778888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000560 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1421)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1421)
+|..+...+|+|.++++.. ..+.|++++.++.|++.+.+... .+..+....+..++.+++++ .++++.+++.+++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~l~~ 165 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL-FMNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8998999999999988642 33899999999999999876532 23333323222222222222 2332444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000560 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLR----EIERDSLKKYLYTCSA 500 (1421)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R----~~El~~l~~~~~~~~~ 500 (1421)
+++...+...+.++.++.+++.++..++..+...|.++|++.||.|+.|+.+.++..+.- +.+.+..+.......+
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVL 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777888888999999999999999999999999999999999998766665543 3333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CC
Q 000560 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-PI 579 (1421)
Q Consensus 501 ~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~~ 579 (1421)
..+.. .-..+.+++++.+.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..+ ..
T Consensus 246 ~~~~~--~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 246 NRAAS--TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 22111 1223445567888888889999999999999999999999999999999999999999999998754211 11
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC
Q 000560 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1421)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~ 658 (1421)
...+....+..|+++|++|+|+.+ .+.|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~ 395 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LID 395 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111111223469999999999742 468999 99999999999999999999999999999999999997 777
Q ss_pred C-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
| .++||||+|+++++|++|||.++++ .+++..+++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 6 5799999999999999999999964 5677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||++||||++++|+|++||||||+||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|++.+.|+++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999887754 4445689999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHH
Q 000560 805 DLIADQNSELVRQMKA 820 (1421)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1421)
++.+ .+..+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (588)
T PRK13657 555 ELVA-RGGRFAALLRA 569 (588)
T ss_pred HHHH-CCChHHHHHHH
Confidence 9987 45566665543
No 70
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.4e-59 Score=588.67 Aligned_cols=498 Identities=17% Similarity=0.203 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV-LASVFLFAKTVESLTQRQWYFGANRIGI 347 (1421)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~-l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 347 (1421)
..+.+++.++...++.++..++..+.|++++.+++....... .. .+. +..++++..++..+......+...+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VL--YLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888999999999999999986643221 11 111 1111212233344444444455667788
Q ss_pred HHHHHHHHHHHHHHhccccCC---CChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000560 348 RVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1421)
Q Consensus 348 riR~~L~~~Iy~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~ 423 (1421)
++...+...+|+|.++++... .++|+++|.++.|++++.+.+.. +..+....+.+++++++++. +.|..++..++
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l~ 161 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 888889999999999887642 38999999999999999987654 33344444444444444332 23244444443
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 424 STIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1421)
Q Consensus 424 ~~~~~~~~~~~~-~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~ 502 (1421)
.++++..+...+ .+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333233 3344556677778889999999999999999999999999999988876665555444444444333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000560 503 FLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1421)
Q Consensus 503 ~~~~~~p~~--v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1421)
.+......+ +.++.++.+.+.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 332222222 223456667777888999999999999999999999999999999999999999999998765211111
Q ss_pred -C--CCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEE
Q 000560 581 -E--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1421)
Q Consensus 581 -~--~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~ 656 (1421)
. .+.......|+++|++|+|+++ +++|+| ||++++||+++|+||+|||||||+++|+|+++|++|++ .
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~ 393 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-T 393 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-E
Confidence 0 0011123469999999999753 368999 99999999999999999999999999999999999997 8
Q ss_pred ECC------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 657 VHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 657 ~~g------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
++| .++||||+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|.+|.+||+|.+|||
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 887 7899999999999999999999865 578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCc
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 780 (1421)
|||||++||||++++|+|++|||||||||+++++.+.+.+ ....+++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999887764 4556789999999985
No 71
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.8e-59 Score=627.90 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=177.0
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcc
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1421)
...|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34599999999997533469999999999999999999999999999999999999999999999999975 45678899
Q ss_pred cEEEccCCccccc-cHhhhcCCC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
|||+||++.+++. |+||||... ...+. +.+.++++.++|.++.. ..+ ..||||||||+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-------k~~----~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-------RLA----GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-------CCh----hhCCHHHHHHHHHH
Confidence 9999999988865 999999642 11222 33556788888876543 333 35999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||+.+|+||+|||||++||+.+.+.+++.|++. .+++|||++||+++.+.. ||||++|++|+++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999885 357999999999999875 9999999999973
No 72
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-58 Score=584.26 Aligned_cols=537 Identities=20% Similarity=0.245 Sum_probs=402.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHD-HSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1421)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~-~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 346 (1421)
.++.+++.+++..++.++..++..+.|.++..+++..- .... ..... .+..++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999998542 2110 00111 111122333334445555555556677888
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000560 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1421)
Q Consensus 347 ~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l~gl 422 (1421)
.++...+...+|+|.++++.. ..++|++++.++.|++++.++... +..+....+.+++++++++. +.|..++..+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 899999999999999988653 338999999999999999997743 44444445555444444432 2223333322
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 423 FSTIFVM-VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1421)
Q Consensus 423 ~~~~~~~-~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~ 501 (1421)
+++.+.. .+...+.++.++..++..++.++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 233455677777888888888888999999999999999999999888887776554433333333322222
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000560 502 AFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1421)
Q Consensus 502 ~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1421)
..+...... .+.++.++.+. .++.++.+..++++.+..+ ...|+..++..+..+.++++|++||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 222221111 22233455555 4667888887776655433 3568888999999999999999999999987642111
Q ss_pred CCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEE
Q 000560 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1421)
Q Consensus 579 ~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~ 657 (1421)
.+..+.......|+++|++|+|+++ .++.|+| |+++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223569999999999753 3478999 99999999999999999999999999999999999997 77
Q ss_pred CC-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 658 ~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
+| .++||||+|+++++||+|||.++.+ .+++...++++.++++++++. |+|.+|.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 76 3799999999999999999999875 577888999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCc
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1421)
|||||++||||++++|++++||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999998888764 5555678999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHH
Q 000560 804 EDLIADQNSELVRQM 818 (1421)
Q Consensus 804 ~~l~~~~~~~~~~~~ 818 (1421)
+|+++ .+..+.++.
T Consensus 558 ~~l~~-~~g~y~~l~ 571 (574)
T PRK11160 558 QELLA-QQGRYYQLK 571 (574)
T ss_pred HHHHh-cCcHHHHHH
Confidence 99987 555555543
No 73
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3e-58 Score=595.10 Aligned_cols=540 Identities=19% Similarity=0.227 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1421)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1421)
++..++.+++.+....+..++..++..+.|++++.+++.+-.... ... -+.+++++++..++..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LST-LSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677778888888888888899999999999987643221 111 23344444555555666666666677788
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000560 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1421)
Q Consensus 346 g~riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~g 421 (1421)
+.++...+...+|+|.++++.. .+++|+++|.+ .|++.+.+++. .+..+....+.+++.+++++.. +|+.+++.
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~li~ 284 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY-SPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999998653 34899999999 59999998763 2333333333333334444432 32555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1421)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~ 501 (1421)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666777888888888889999999999999999999999999999888888776555444444433333332
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000560 502 AFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1421)
Q Consensus 502 ~~~~~~~p~--~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1421)
......... .+.++.+|.+....+.+|.+.++++..+...+..|+..+...+..+.+++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 222222211 233456777877788899999999999999999999999999999999999999999999876522211
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC
Q 000560 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1421)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~ 658 (1421)
...+....+..|+++|++|+|+++ .++.|+| |+++++||+++|+|+||||||||+++|+|+++|++|++ .++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~id 517 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVD 517 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Confidence 111111223579999999999754 3468999 99999999999999999999999999999999999997 777
Q ss_pred C-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
| .++||||+|.++++||+|||.++.+ .+++...++++.+++.+.++.+|+|.+|.+|++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 6 3799999999999999999999864 5677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||++||||++++|+++|||||||+||+++.+.+.+. +....+++|+|++||+++.++.||+|++|++|+|++.|+++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998888765 45556789999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHH
Q 000560 805 DLIADQNSELVRQMK 819 (1421)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1421)
++.+ .+..+.++..
T Consensus 677 ~l~~-~~~~y~~l~~ 690 (694)
T TIGR01846 677 ELLA-LQGLYARLWQ 690 (694)
T ss_pred HHHH-cCChHHHHHH
Confidence 9987 4556666543
No 74
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-60 Score=601.47 Aligned_cols=190 Identities=21% Similarity=0.361 Sum_probs=159.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEccCC--cccc-ccHhhhcCC-CCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000560 1287 IIPQDP--MLFQ-GTVRTNLDP-LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1421)
Q Consensus 1287 iIpQdp--~LF~-gTIR~NLdp-~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1421)
|+||++ .+.. .|+.+++.. .....++++.+.|+..++.+. -.+.++ ..||||||||++|||+++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 378887642 122345667788888877421 123344 35999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1363 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1363 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||||++||..+...+.+.|++. +.|||+|||+.+.+.. ||+|++|++|+++
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999885 4599999999999865 9999999999973
No 75
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.4e-57 Score=572.92 Aligned_cols=532 Identities=18% Similarity=0.274 Sum_probs=409.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1421)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1421)
.++.+++.+++..++.++..++..+.|+++..+++.+...+. . . . ++..+++..++..+....+.+...++..+
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V-L-P--TLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H-H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888899999999999999999999997654321 1 1 1 11111122233334344445566788888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000560 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1421)
Q Consensus 349 iR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1421)
+|..+...+|+|.++++.. .+++|++++.++.|++.+.+++. .+..+....+.+++++++++. +.|..++..+++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~ 165 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999998753 34899999999999999987654 333444445555444443332 332444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000560 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCSA 500 (1421)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~----El~~l~~~~~~~~~ 500 (1421)
+++...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.++..+.-++ +.+..+.......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677778888888888888999999999999999999999999887776665433 22222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCC
Q 000560 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPI 579 (1421)
Q Consensus 501 ~~~~~~~~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~ 579 (1421)
..++.... .+.++.++.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.++. ++..
T Consensus 246 ~~~~~~~~--~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 246 NRMASTIS--MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 22211111 23345677777778889999999999999999999999999999999999999999999986542 1111
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC
Q 000560 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1421)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~ 658 (1421)
...+.......++++|++|+|+++ .+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~ 395 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LID 395 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EEC
Confidence 111111123469999999999743 357999 99999999999999999999999999999999999997 666
Q ss_pred C-------------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
| .++||||+|+++++|++|||.++.+ .+++..+++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 5 4799999999999999999999865 4566677788888888889999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||++||||++++|++++||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999888865 455556789999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHH
Q 000560 805 DLIADQNSELVRQMK 819 (1421)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1421)
++.+ .+..+.++..
T Consensus 555 ~l~~-~~~~y~~l~~ 568 (585)
T TIGR01192 555 ELIQ-KDGRFYKLLR 568 (585)
T ss_pred HHHH-CCChHHHHHH
Confidence 9987 4555655554
No 76
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-58 Score=632.90 Aligned_cols=451 Identities=19% Similarity=0.224 Sum_probs=350.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
...+.+.-..+...+++++++.|..+|++.++|+++||+++|++.++... ..+..+....+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777778889999999999999999999999999999999999875 34444444444444443333221001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000560 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1421)
Q Consensus 1032 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1421)
+.++++++++.+..++.+..++.++.....+....+.++|.++|+++||+|++|+.+.+++.+..++..+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222223344455555666666667777789999999999999999999999999988877665554444332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
+.......... ++.++.+.......+.++++.+..++++...+...+..+...+..+.+..+|.+|+.++.+.+++.+.
T Consensus 525 ~~~~~~~~~~~-~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPV-VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22221111111 11111222223346678888888888887777777888888888999999999999999976544211
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1270 (1421)
..+ +..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ----~~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 ----QNP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred ----ccC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 111 111234579999999999753 35699999999999999999999999999999999999999998763
Q ss_pred eeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1271 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
.+|++++||||+|.+|+|||||||....++++++++++++.|++.++++.+|+|+||.|||+|.+||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHH-HHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||+|||||++++|+|++||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999977 45577777899999999999999999999999999974
No 77
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-57 Score=572.63 Aligned_cols=506 Identities=21% Similarity=0.253 Sum_probs=386.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1421)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~ 352 (1421)
|+.+++..++.++..++..+.|+++..+++.+. +... ... -+.+++.+++..++..++.....+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888889999999999999999999773 3221 111 222333444444555555555666777788888888
Q ss_pred HHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000560 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1421)
Q Consensus 353 L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~ 428 (1421)
+...+|+|.++++.. ..++|+++|.++.|++++.++.. .+..+....+.+++++++++. ++|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888899999887543 33899999999999999998764 355666555555555444432 2223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1421)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~ 508 (1421)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++..+.-++..+...+..........+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567777777888889999999999999999999999999999888876654333222222111122211111111
Q ss_pred HHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000560 509 PTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1421)
Q Consensus 509 p~~v--~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1421)
..+. .++.++.+.+..+.++.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.++........+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 1111 11223444445678999999999999999999999999999999999999999999997543211111111 11
Q ss_pred CCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC------
Q 000560 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1421)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------ 659 (1421)
....|+++|++|+|++. +++.++| |+++++||+++|+||+|||||||+++|+|+++|++|++ .++|
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 12469999999999754 3478999 99999999999999999999999999999999999997 7776
Q ss_pred -------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHH
Q 000560 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1421)
Q Consensus 660 -------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1421)
.++||+|+|+++++||+|||.+|.+ .+++..+++++.+++.++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 3899999999999999999999865 56788899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEE
Q 000560 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1421)
Q Consensus 732 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l 792 (1421)
|||++++|++++||||||+||+++.+.+++. +....+++|+|+|||+++.+..||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999998765 45556789999999999999999999985
No 78
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-58 Score=629.21 Aligned_cols=450 Identities=19% Similarity=0.222 Sum_probs=352.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
...+.+.-..+...+++++++.|..++++.++|+++|++++|++.++.... .+..+....+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788889999999999999999999999999999999998763 4555555555555444443321111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000560 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1421)
Q Consensus 1032 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1421)
+.++++++.+.++.++.+..+..++.....+....+.+.|.++|+++||+|++|+.|.++..+..++..+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333344455555556666666677778889999999999999999999999999988776664443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
+.......... .+.++.+.......+.++++.+..++++...+...+..+...+..+.+..+|.+|+.++.+.+++.+.
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22221111111 11111222223346778888887777777777777777788888999999999999999976543211
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc-cEEEEc
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-GRILID 1269 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~-G~I~ID 1269 (1421)
..++ .-+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|.+
T Consensus 604 ----~~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 ----PNPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ----cCCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 0111 11224579999999999753 3569999999999999999999999999999999999999999 99973
Q ss_pred CeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1270 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
|++++||||+|.+|+|||||||..+.++++++++++++.|+|.+++..+|+|+||.|||+|.||||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 67899999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHH-HHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||++||||++++|+|++||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999876 56787777899999999999999999999999999974
No 79
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7e-57 Score=570.29 Aligned_cols=529 Identities=26% Similarity=0.361 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1421)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~ 352 (1421)
++ .+....++.++..++....|.++..+++.+.. .. .. ...+...+++..++..++.....+....++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-DL--GE--LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888888999999999999999987761 11 11 111122222222233344444445556666888888
Q ss_pred HHHHHHHHHhccccC--CC-ChHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000560 353 LTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1421)
Q Consensus 353 L~~~Iy~K~L~ls~~--~~-~~G~ivnlms~D~~ri~~~~~~~h~~w~-~plqi~~al~lL~~~lG~~a~l~gl~~~~~~ 428 (1421)
+...+|+|.++++.. .+ .+|++++.++.|++.+...+........ .++-++..+++++ .++|..++..++..+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 888999999998732 22 7799999999999999998776522222 3333333333333 34433445445544555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000560 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-FWA 507 (1421)
Q Consensus 429 ~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~-~~~ 507 (1421)
......+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++..+.-+...+...+.....+..... ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666688888888889999999999999999999999999776665554433333222212222222111 111
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 000560 508 SP-TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1421)
Q Consensus 508 ~p-~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~ 585 (1421)
.. ..+.++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 11 123334455666667779999999999999999999999999999999999999999999998652 221111 12
Q ss_pred CCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----
Q 000560 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1421)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g----- 659 (1421)
..+..|+++|++|+|+++ +++++| ||++++||++|||||+|||||||+++|+|.++|++|++ .++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 234569999999999853 589999 99999999999999999999999999999999999997 7776
Q ss_pred --------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 --------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
+++||||+|++|++||+|||.+|++ ..++...++++.+++++.++.+|+|.+|.+||+|.+||||||||++
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 4799999999999999999999988 4777888888888899999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhh
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~ 810 (1421)
||||+++||+|++||||||+||+++.+.+.+.+ ....++||+|+|+|+++.+..||+|+||++|+|++.|+++|+++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDAL-KKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 999999999999999999999999988887654 45557899999999999999999999999999999999999998 4
Q ss_pred hhHHHHHHHH
Q 000560 811 NSELVRQMKA 820 (1421)
Q Consensus 811 ~~~~~~~~~~ 820 (1421)
++.+.++...
T Consensus 554 ~g~y~~l~~~ 563 (567)
T COG1132 554 GGLYARLYQA 563 (567)
T ss_pred CCHHHHHHHH
Confidence 6677776654
No 80
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.9e-59 Score=593.90 Aligned_cols=190 Identities=25% Similarity=0.382 Sum_probs=159.2
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEccCC-ccccc-cHhhhcCCC-CCC--C--HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1287 IIPQDP-MLFQG-TVRTNLDPL-EQH--S--DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1287 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++.+ +..+.+++ .||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~----~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPVK----ALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChhh----hCCHHHHHHHHHHHHH
Confidence 999986 46554 999999642 111 2 445666777766632 11244443 5999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe-CCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-EGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~-~G~Iv 1421 (1421)
+++|++|||||||++||..+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|+|+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 9999999999999999999999999999875 5699999999999865 99999998 89873
No 81
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1e-59 Score=524.32 Aligned_cols=438 Identities=28% Similarity=0.422 Sum_probs=329.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g--- 659 (1421)
..++++|.+.++...+ ......++ +|++++||.+|+||++|||||-..++++|+++. -+|++ ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 3577888777766431 24567889 999999999999999999999999999999975 34565 4443
Q ss_pred --------------EEEEEcCCCcC-CC--CcHHHHhc----cCCCCCH----HHHHHHHHHhccchhHHhhcCCCCccc
Q 000560 660 --------------KKAYVPQSSWI-QT--GTIRENIL----FGKDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1421)
Q Consensus 660 --------------~iayv~Q~~~i-~~--~Ti~enI~----fg~~~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~i 714 (1421)
+|++++|+|.- .| -||...|. ..+.+.. ++.-+.++..++.+ -...+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl 151 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRL 151 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhh
Confidence 68999999963 23 37665554 3333322 22222223233221 11234
Q ss_pred cCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEEE
Q 000560 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1421)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~ 791 (1421)
...+++|||||||||.||.||..+||++|-||||.|||..+..+|.+ +++.+. .|..++++|||+..... ||+|+|
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 56789999999999999999999999999999999999999999987 444443 38999999999999876 999999
Q ss_pred EeCCEEEEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhh
Q 000560 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTE 871 (1421)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 871 (1421)
|.+|++++.|+.++++..+...+.+.+-+
T Consensus 231 M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------- 259 (534)
T COG4172 231 MQHGEIVETGTTETLFAAPQHPYTRKLLA--------------------------------------------------- 259 (534)
T ss_pred EeccEEeecCcHHHHhhCCCChHHHHHHh---------------------------------------------------
Confidence 99999999998877765322222111100
Q ss_pred cCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHH
Q 000560 872 LGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951 (1421)
Q Consensus 872 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1421)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1421)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~ 1031 (1421)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000560 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1421)
Q Consensus 1032 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1421)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1112 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
.|+.
T Consensus 260 ---------------------------------------------------------------------------aeP~- 263 (534)
T COG4172 260 ---------------------------------------------------------------------------AEPS- 263 (534)
T ss_pred ---------------------------------------------------------------------------cCCC-
Confidence 0110
Q ss_pred ccCCCCCCCCCCCCCcEEEEeeeeeeCCC---------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPT---------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~ 1262 (1421)
...+|..-...--++.+|+.+.|+-. .-.+.+||||+.++||.+||||+||||||||-++|+|+++++
T Consensus 264 ---g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 264 ---GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ---CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 00001000011236667777766321 124799999999999999999999999999999999999876
Q ss_pred ccEEEEcCeeCCCCChHH---HhcccEEEccCCc--cc-cccHhhhcC-------CC--CCCCHHHHHHHHHHcCcHHHH
Q 000560 1263 GGRILIDGVDISMIGLQD---LRSRLSIIPQDPM--LF-QGTVRTNLD-------PL--EQHSDQEIWEVINKCHLAEIV 1327 (1421)
Q Consensus 1263 ~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF-~gTIR~NLd-------p~--~~~sdeeI~~aL~~~~L~~~i 1327 (1421)
|+|..+|.||...+.++ +|+++-+|+|||+ |= .-||-+-+. |. ....|+.+.+||+.+||+.-.
T Consensus 341 -G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~ 419 (534)
T COG4172 341 -GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT 419 (534)
T ss_pred -ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH
Confidence 99999999999988766 7899999999996 11 124444332 11 112466789999999987654
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhh
Q 000560 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1405 (1421)
Q Consensus 1328 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~t 1405 (1421)
.. .-...+|||||||++||||+.-+|++++||||||+||..-.+.|.+.+|+.. .+-+-++|+|++..
T Consensus 420 r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V 489 (534)
T COG4172 420 RN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV 489 (534)
T ss_pred hh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 32 1234699999999999999999999999999999999999999999998754 46799999999999
Q ss_pred hhc-cCEEEEEeCCeeC
Q 000560 1406 VID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1406 i~~-~DrIlvL~~G~Iv 1421 (1421)
++. ||+|+||.+||||
T Consensus 490 vrAl~~~viVm~~GkiV 506 (534)
T COG4172 490 VRALCHRVIVMRDGKIV 506 (534)
T ss_pred HHHhhceEEEEeCCEEe
Confidence 965 9999999999996
No 82
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-56 Score=525.93 Aligned_cols=523 Identities=21% Similarity=0.290 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1421)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy 358 (1421)
+.+++..+..++...+-+++-..++-+-..+. ... -+.++++++++.++.+++.-.-....++.+.++|..|...++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777776666654433221 111 233445555555666666555556677889999999999999
Q ss_pred HHHhccccCC---CChHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000560 359 KRSMAIKFAG---PSSGIIINMINVDVERIGDFF----LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1421)
Q Consensus 359 ~K~L~ls~~~---~~~G~ivnlms~D~~ri~~~~----~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~ 431 (1421)
+|..+++... ..+|++.++++.-++.+..++ ..+...-..|+-+.++++.+.+.-| +.-++++.+...+
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa----lIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA----LILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHH
Confidence 9999987432 388999999999999887764 3334445567777777777775444 4333444343344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKK----LLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1421)
Q Consensus 432 ~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~----I~~~R~~El~~l~~~~~~~~~~~~~~~~ 507 (1421)
...+++..++..+++++.-..=-...-+-|+|+.++|.|+-.+...++ =++.|+.-++.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677766666667778899999999999986655544 4567888888888765555544444333
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCC-CCC
Q 000560 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITE-PTS 584 (1421)
Q Consensus 508 ~p~~v~~~tF~~~~~~~-~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~-~~~ 584 (1421)
+- .+..+ +...-+.+ ++++-...|.+|-+---.-.|++.+...++.-.++..+.+++..|++.|+. .+..+. ...
T Consensus 237 si-AlvAv-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SI-ALVAV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HH-HHHHH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 32 22233 33344456 589999999999988889999999999999999999999999999998873 222211 111
Q ss_pred CCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----
Q 000560 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1421)
Q Consensus 585 ~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---- 659 (1421)
......+..+|.+|.|++. ++.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 1223345556999999864 388999 99999999999999999999999999999999999997 8876
Q ss_pred ---------EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 ---------~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
+++||+|+|.++.+|+||||.++++ -+++...++++..+|.+.++. |+|-+|.+||+|.+|||||+||+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 4899999999999999999999998 457788899999999988888 99999999999999999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1421)
+||||+++++++|||||||++||+++++.+.+ .+..+.++|||+++||+++.+..+|+|++|++|+++++|+++++.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 99999999999999999999999998776654 5667778899999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHh
Q 000560 810 QNSELVRQMKAH 821 (1421)
Q Consensus 810 ~~~~~~~~~~~~ 821 (1421)
++..+.+++..+
T Consensus 544 ~~~~y~~l~~~q 555 (559)
T COG4988 544 KQGLYANLLKQQ 555 (559)
T ss_pred cCcHHHHHHHHH
Confidence 566676666543
No 83
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.2e-57 Score=577.43 Aligned_cols=191 Identities=22% Similarity=0.318 Sum_probs=159.6
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..++++|++++|+++ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3599999999999999999999999999999999999999999999875 3479
Q ss_pred EEEccCCccccccHhhhcC-----CCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000560 1286 SIIPQDPMLFQGTVRTNLD-----PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1421)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLd-----p~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1421)
+|+||++. ...++.+|.. .....+++++.++|+..++.+.. .+.+ ...||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~------~~~~----~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQP----MYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH------hcCC----ccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 12234677888999998885321 1222 3469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1361 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|++|||||||++||..+...+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999874 3 599999999999875 9999999999873
No 84
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-56 Score=603.89 Aligned_cols=205 Identities=22% Similarity=0.284 Sum_probs=171.2
Q ss_pred cEEEEeeeeeeCC-----------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CccEEEEcCeeC
Q 000560 1207 KIELENLLVQYNP-----------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDI 1273 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~-----------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p--~~G~I~IDG~dI 1273 (1421)
.+.|+||++..+. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999988742 123599999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHHHhcccEEEccCCcccc-ccHhhhcCCC------CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000560 1274 SMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL------EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1421)
Q Consensus 1274 ~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~------~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1421)
. ....|+.++|+||++.++. .||||||... .+.+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 2457788999999988776 4999999631 122333 36678888887653 366776544
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh-h-hccCEEEEEeC-
Q 000560 1343 -ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE- 1417 (1421)
Q Consensus 1343 -~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i-~~~DrIlvL~~- 1417 (1421)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999864 47899999999984 4 56999999996
Q ss_pred CeeC
Q 000560 1418 GKLK 1421 (1421)
Q Consensus 1418 G~Iv 1421 (1421)
|+++
T Consensus 1097 G~~v 1100 (1470)
T PLN03140 1097 GQVI 1100 (1470)
T ss_pred CEEE
Confidence 7863
No 85
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.9e-56 Score=511.88 Aligned_cols=475 Identities=19% Similarity=0.200 Sum_probs=350.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHH
Q 000560 936 LSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015 (1421)
Q Consensus 936 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~ 1015 (1421)
+.++..++..+|+..+...+.+.-..+....+...+++|..--...+..+.+ +|.+.+..++...-...++..-.+
T Consensus 72 ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~ 147 (580)
T COG4618 72 LYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM 147 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH
Confidence 3445667888899999999999999999999999988776544333333333 466666665543222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHH
Q 000560 1016 LSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSL 1095 (1421)
Q Consensus 1016 l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~ 1095 (1421)
-.-+++++...|++.++.+...++.+.+...--..+|+-.+...+....-.++..-+..+.++|+|.|......+++.+.
T Consensus 148 P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~ 227 (580)
T COG4618 148 PLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRF 227 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHH
Confidence 34455666677777666554444333333333333444444445555666788889999999999999987766666554
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000560 1096 IDDYSCVTFHNCGTMEWLCLRINLLFNFAFF-LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMI 1174 (1421)
Q Consensus 1096 ~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~ 1174 (1421)
...+....-.....+.-++...-.+=.++.. +..+.......+.+++|.+-..-...-..-..+-..+..|-+.-....
T Consensus 228 ~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~ 307 (580)
T COG4618 228 NAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQ 307 (580)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHH
Confidence 4443332222211111111111111111111 112223334567777775432211111112334456778888888889
Q ss_pred HHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHH
Q 000560 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQA 1254 (1421)
Q Consensus 1175 sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~ 1254 (1421)
|..|+.+..+..++.... -+-|. .+|.+.++++++.=++...++|+|+||+++|||-+||+||||||||||.++
T Consensus 308 s~~Rl~~lL~~~p~~~~~----m~LP~--P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~ 381 (580)
T COG4618 308 SYKRLNELLAELPAAAER----MPLPA--PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381 (580)
T ss_pred HHHHHHHHHHhCccccCC----CCCCC--CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHH
Confidence 999999998654333211 11111 368999999999666666689999999999999999999999999999999
Q ss_pred HhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccc
Q 000560 1255 LFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRL 1333 (1421)
Q Consensus 1255 L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~g 1333 (1421)
|.|...|.+|.|.+||-|+++.+.+++-++|||.|||-.||+|||+|||.-++ +.+++.|.+|.+.++.+|.|.++|+|
T Consensus 382 lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~G 461 (580)
T COG4618 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQG 461 (580)
T ss_pred HHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999998776 77888899999999999999999999
Q ss_pred cCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEE
Q 000560 1334 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLV 1412 (1421)
Q Consensus 1334 Ldt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrI 1412 (1421)
|||.|||+|..||||||||++||||+..+|+++|||||-||||.+-|+.+.++|.+.. +++|+|+||||++.+..+|+|
T Consensus 462 YdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 462 YDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred ccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhccee
Confidence 9999999999999999999999999999999999999999999999999999997754 689999999999999999999
Q ss_pred EEEeCCee
Q 000560 1413 LVLDEGKL 1420 (1421)
Q Consensus 1413 lvL~~G~I 1420 (1421)
+||++|++
T Consensus 542 lvl~~G~~ 549 (580)
T COG4618 542 LVLQDGRI 549 (580)
T ss_pred eeecCChH
Confidence 99999986
No 86
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.9e-57 Score=550.70 Aligned_cols=470 Identities=22% Similarity=0.324 Sum_probs=331.1
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--EEEEEcC
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--~iayv~Q 666 (1421)
.|.++|.++++.. .+.+++ |+++.+|+++||||+||+||||||++|.|++.|++|+| ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4788999999953 478899 99999999999999999999999999999999999998 5554 7999999
Q ss_pred CCcCCC-CcHHHHhccCCCCCH---HHHHHHHH---------------------HhccchhHHhhcCC--CCccccCCCC
Q 000560 667 SSWIQT-GTIRENILFGKDMRQ---SFYEEVLE---------------------GCALNQDIEMWADG--DLSVVGERGI 719 (1421)
Q Consensus 667 ~~~i~~-~Ti~enI~fg~~~~~---~~y~~v~~---------------------~c~l~~dl~~~~~g--d~t~ig~~g~ 719 (1421)
++.... .||.|.+.-|...-. ..|++... ...++.+++..-.| .... ..+..
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 998864 599999988753211 11111111 01111222222111 1111 45678
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEE-
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI- 797 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i- 797 (1421)
+||||||.||+|||||..+||++||||||++||..+..++- +.+.. .+| |+|+||||.+||+. |++|+.+++|++
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe-~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE-DYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999877664 34443 245 99999999999987 999999999987
Q ss_pred EEecCchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchH
Q 000560 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKW 877 (1421)
Q Consensus 798 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 877 (1421)
.+.|+|+.+.+.+.........+.+.. +++.+
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~------------------------------------------~~~~~------ 261 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQ------------------------------------------QKELA------ 261 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHH------
Confidence 478999998763222111110000000 00000
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000560 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIK 957 (1421)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~ 957 (1421)
....++..
T Consensus 262 -~~~~~i~r----------------------------------------------------------------------- 269 (530)
T COG0488 262 -KEQEWIRR----------------------------------------------------------------------- 269 (530)
T ss_pred -HHHHHHHH-----------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 958 TAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVIL 1037 (1421)
Q Consensus 958 ~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~ 1037 (1421)
+.
T Consensus 270 --------------------------------~~---------------------------------------------- 271 (530)
T COG0488 270 --------------------------------GK---------------------------------------------- 271 (530)
T ss_pred --------------------------------HH----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 000560 1038 GISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRI 1117 (1421)
Q Consensus 1038 ~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1117 (1421)
....+++
T Consensus 272 --------~~~~~~k----------------------------------------------------------------- 278 (530)
T COG0488 272 --------AAASKAK----------------------------------------------------------------- 278 (530)
T ss_pred --------hccchHH-----------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--hcCCCCCcccc-C
Q 000560 1118 NLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF--TNIPSEAPLVI-K 1194 (1421)
Q Consensus 1118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~--~~~~~E~~~~~-~ 1194 (1421)
..+..+...+++.+- ...|.+..... -
T Consensus 279 --------------------------------------------------~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~ 308 (530)
T COG0488 279 --------------------------------------------------KAKSRIKRLEKLEARLAEERPVEEGKPLAF 308 (530)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhhhhhccccccccccee
Confidence 000000111222211 00111100000 0
Q ss_pred CCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC
Q 000560 1195 NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274 (1421)
Q Consensus 1195 ~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~ 1274 (1421)
.-.+++.-+.+-.++++|+++.|.++ .++++++||.|++|++||||||||+|||||+++|.|-..|.+|+|.+.-.
T Consensus 309 ~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--- 384 (530)
T COG0488 309 RFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--- 384 (530)
T ss_pred eccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---
Confidence 00111111123358999999999765 56999999999999999999999999999999999999999999998632
Q ss_pred CCChHHHhcccEEEccCC-ccc-cccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1275 MIGLQDLRSRLSIIPQDP-MLF-QGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1275 ~i~l~~LR~~i~iIpQdp-~LF-~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
-++||.+|+. .++ +.|+-+++.... +..+.++...|.+.++..- ...++|+ .||||||-
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v~----~LSGGEk~ 446 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPVG----VLSGGEKA 446 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCchh----hcCHhHHH
Confidence 2699999997 444 338999887543 4448899999999988542 2345554 59999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
|+.||+.++.+|++|||||||++||.+|...+.++|.+. +.|||+|||+...+.. |++|+++++
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 999999999999999999999999999999999999874 4599999999999976 999999986
No 87
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.3e-54 Score=593.09 Aligned_cols=466 Identities=18% Similarity=0.205 Sum_probs=354.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000560 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1421)
Q Consensus 344 ~~g~riR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l 419 (1421)
..+.+.-..+-..+|++.++.+. ....+|+|+|.++.|++.+.+.+. .+..+...++.++.++++++..-. +.++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~~~ 1109 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34445555555556666666543 233899999999999999998765 355556666666666665544222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1421)
Q Consensus 420 ~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~ 499 (1421)
+.+.++++...+..+..+..+..++...+.+....+..+|.++|+++||.|+||+.|.++..+.-+...+..........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455555555666677778999999999999999999999988877765544443222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Q 000560 500 AIAFLFWASPTLVSVITFGVCILL-KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK- 577 (1421)
Q Consensus 500 ~~~~~~~~~p~~v~~~tF~~~~~~-~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~- 577 (1421)
...........++ ++..+.+.+. .+.++++.+..++.+...+..|+..+...+..+.++.+|.+||.+|++.++..+
T Consensus 1190 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 1111111111111 1112222333 467999999999999999999999999999999999999999999997654211
Q ss_pred CCC--CCCC-CCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCc
Q 000560 578 PIT--EPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1421)
Q Consensus 578 ~~~--~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 653 (1421)
..+ ..+. .+.+..|+++|++|+|+++ ..++|+| ||+|++||++||||++|||||||+++|+|.++|++|+
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 111 1111 1234679999999999864 3479999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 654 vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
+ .++| +++||||+|.+|+|||||||....+++++...++++.|++.+.++.+|+|.+|.+||+|.+
T Consensus 1343 I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1343 I-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred E-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 7 7776 4799999999999999999983336777888899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEe
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~ 800 (1421)
||||||||++||||++++|+|+|||||||+||+++.+.+. +.++...+++|+|+|+|+++.+..||+|+||++|+|++.
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999976665 456666789999999999999999999999999999999
Q ss_pred cCchhhhhhhhhHHHHHHHH
Q 000560 801 GKYEDLIADQNSELVRQMKA 820 (1421)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~~ 820 (1421)
|+++|+++ .++.|.++..+
T Consensus 1501 G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHh-CCCHHHHHHHH
Confidence 99999998 45667666543
No 88
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.5e-55 Score=560.18 Aligned_cols=509 Identities=13% Similarity=0.084 Sum_probs=397.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhccccccccc---cchhhhHHH----hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR---EQLIGVFIF----LSGGSSFFILGRAVLLATIAIKTAQRLFL 964 (1421)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~---~~~l~vy~~----l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 964 (1421)
.+.+.+++.++...+.+..+++.....+.-...+. ..++..+++ ++++..+..++...+......+..+++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677777788887766542111111 111222333 33333444445555556666677777777
Q ss_pred HHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000560 965 NMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWY 1043 (1421)
Q Consensus 965 ~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~-~~~~~~~v~ip~~~~~~~~ 1043 (1421)
+.+++....++.|||. ++|++++|+++|++.+...+...+..++..++.+++.++.++. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 7777777788899997 8899999999999999999999999999999999988887775 8898888888788888888
Q ss_pred HHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000560 1044 QAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1123 (1421)
Q Consensus 1044 ~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1123 (1421)
.+++.+..+++.+......+.+.+.+.|.++|+.+||+|+.++.+.+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998888888888777777777777777666542
Q ss_pred HHHHH--HHH-H-HHhcC----CCCCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCcc
Q 000560 1124 AFFLV--LII-L-VTLPR----SAIDPSL-AGLAATY---GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1124 ~~~~~--~~~-~-~~~~~----~~~~~~~-~gl~l~~---~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
....+ .+. . +.... +.++.+. ++...+| ...+...+..+.....++.....+.+|+.++.+.++|...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21111 111 1 22211 4556553 3334444 3455666777888889999999999999999864332110
Q ss_pred ------ccCC---C-----CC------CCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHH
Q 000560 1192 ------VIKN---S-----RP------SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251 (1421)
Q Consensus 1192 ------~~~~---~-----~~------~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTL 1251 (1421)
..++ . ++ .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 0 00 0000134679999999999643 369999999999999999999999999999
Q ss_pred HHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCC--------CCCCHHHHHHHHHHcCc
Q 000560 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--------EQHSDQEIWEVINKCHL 1323 (1421)
Q Consensus 1252 i~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sdeeI~~aL~~~~L 1323 (1421)
+++|.|+++|++|+|.+|+ |++++++||+|.+|++|+|+|+... .+.++++++++++++++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999742 24678999999999999
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCh
Q 000560 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1403 (1421)
Q Consensus 1324 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl 1403 (1421)
.+++.+ |.|+|+..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999874 89999999999
Q ss_pred hhhhccCEEEEEeC
Q 000560 1404 PTVIDNDLVLVLDE 1417 (1421)
Q Consensus 1404 ~ti~~~DrIlvL~~ 1417 (1421)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999974
No 89
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-56 Score=561.48 Aligned_cols=184 Identities=26% Similarity=0.367 Sum_probs=158.2
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ . +++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------KIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------eEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1 599
Q ss_pred EEccCCcc-ccccHhhhcCCC-CCC-CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1287 IIPQDPML-FQGTVRTNLDPL-EQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1287 iIpQdp~L-F~gTIR~NLdp~-~~~-sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+.. |.++ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-------DKNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-------hCCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 466999999642 122 234567788888886543 3444 359999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
+||||||||++||.++...+.+.|++.. .++|||+|+|+++.+.. ||||++|++
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 9999999999999999999999999864 37899999999998865 999999975
No 90
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-53 Score=494.41 Aligned_cols=514 Identities=22% Similarity=0.302 Sum_probs=388.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000560 289 IASYIGPFLITNFVSFLSGKHDHSS--YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366 (1421)
Q Consensus 289 ~~~~~~P~ll~~~i~~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~ 366 (1421)
.+....|++++..++-+++-+. .+ .......+.+++++.+..+++.-.-.+....+..++--....-+|+..+.++.
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~-~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADG-NPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred HhheehHHHHHHHHhhhhhccc-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4445569999999998863322 12 11122334445555555555544444444445555555555666777766654
Q ss_pred C---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 367 A---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERF 442 (1421)
Q Consensus 367 ~---~~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~ 442 (1421)
. ++++|++.+.|..-...|.+++.. +..+....+++.++...+|...|...++..++.+.....++..+.++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 3 348999999999999888888653 455666778888889999999993333344444445556666778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000560 443 HSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLF---WASPTLVSVITFG 518 (1421)
Q Consensus 443 q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~-R~~El~~l~~~~~~~~~~~~~~---~~~p~~v~~~tF~ 518 (1421)
+++++++.|+-.+..-+.|.|-.+||.|+=|+.-.++..+. ++.|-..++....+ ++.++.- +++| ++.++..+
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~~iFsv~-~~~im~l~ 280 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQKAIFSVA-LTFIMVLG 280 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999876665543 44444433332222 2222211 1111 11112222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEEeeEE
Q 000560 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1421)
Q Consensus 519 ~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1421)
..-+....+|.+...-.-+++..|..|+..|...+..+.|+..-++-....+..+++.... ..|....+..|+++|++|
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~f 359 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVHF 359 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeEE
Confidence 2223456799999999999999999999999999999999888777665554444422110 122223345699999999
Q ss_pred EeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------------EEEEE
Q 000560 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1421)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------------~iayv 664 (1421)
+|.++ .++|++ ||+|++||++||+|+|||||||++++|++..+ .+|++ .++| .||||
T Consensus 360 ~y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 360 SYGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EeCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEe
Confidence 99854 579999 99999999999999999999999999999999 99997 8877 37999
Q ss_pred cCCCcCCCCcHHHHhccCCCCC-HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEE
Q 000560 665 PQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1421)
Q Consensus 665 ~Q~~~i~~~Ti~enI~fg~~~~-~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1421)
||+..+||+||.+||.+|.+.. .+...++++..++++-+..+|+|.+|.+||+|..|||||||||+||||+.+||+|++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 9999999999999999998753 333334445557888899999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHH
Q 000560 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1421)
Q Consensus 744 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1421)
+|||||+||.++.+.+++. +++...+||+|+|-|+++.++.||+|+++++|++.+.|+++|++. +++.+.++
T Consensus 511 ~DEaTS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred ecCcccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 9999999999999999975 455778999999999999999999999999999999999999998 55555544
No 91
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-52 Score=571.04 Aligned_cols=460 Identities=17% Similarity=0.186 Sum_probs=345.4
Q ss_pred HHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000560 352 ALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1421)
Q Consensus 352 ~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~ 427 (1421)
.+-..+|++.++.+. ....+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++..-. +..++.+.++++
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344556666666543 233899999999999999998764 355555566666666555543322 322222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000560 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFW- 506 (1421)
Q Consensus 428 ~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~- 506 (1421)
...+...+.+..+..++.....++.-....+|.++|+++||.|++|+.|.++..+.-+...+...+.............
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666666677777789999999999999999999998887755433333221111111111111111
Q ss_pred HH-HHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--C---
Q 000560 507 AS-PTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK--P--- 578 (1421)
Q Consensus 507 ~~-p~~v~~~tF~~~~--~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~--~--- 578 (1421)
.. ...+.++.++++. .....++++.+..++.+...+..|+..+...++.+.++++|++||.+|++..++++ .
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 11 1111122222222 22334788888888888888899999999999999999999999999996322110 0
Q ss_pred --------------------CCC--C----CCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEcc
Q 000560 579 --------------------ITE--P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGS 631 (1421)
Q Consensus 579 --------------------~~~--~----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~ 631 (1421)
.+. . +.......|+++|++|+|+++ ..++|+| ||+|++||++||||+
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEECC
Confidence 000 0 011123569999999999754 3469999 999999999999999
Q ss_pred CCCChHHHHHHHcCCccCCCCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhc
Q 000560 632 VGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1421)
Q Consensus 632 ~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~ 698 (1421)
+|||||||+++|+|.++|.+|+| .++| .++||||+|.+|++||||||..+.+++++...++++.|+
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 99999999999999999999997 7776 479999999999999999999877788888999999999
Q ss_pred cchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccC-CCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEc
Q 000560 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1421)
Q Consensus 699 l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvt 777 (1421)
+.+.++.+|+|.+|.+|++|.|||||||||++||||++++ |+|+|||||||+||+++.+.+. +.++...+++|+|+|+
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIA 1502 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999996 8999999999999999987775 4566677899999999
Q ss_pred CCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHHHH
Q 000560 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1421)
Q Consensus 778 H~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1421)
|+++.+..||+|++|++|+|++.|+++|++++++..|.+++..
T Consensus 1503 HRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred ccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999997446677776654
No 92
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-52 Score=480.96 Aligned_cols=459 Identities=21% Similarity=0.317 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH
Q 000560 344 RIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL--YKNLGAAPA 418 (1421)
Q Consensus 344 ~~g~riR~~L~~~Iy~K~L~ls~~~~---~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL--~~~lG~~a~ 418 (1421)
..-.|+=+.+.-.+|+|...++.... .+|++.|.+..|++.+++....+...|...+-+++++.+. +..++ .+.
T Consensus 84 ~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~Al 162 (573)
T COG4987 84 DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LAL 162 (573)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence 34457778888889999988776543 8999999999999999999888887777665554444333 44445 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1421)
Q Consensus 419 l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~ 498 (1421)
+.++..++..+.+...+.+..++..++..+.+..--....+.+.|+.-++++|-++.|.+.+++ .|..|.+.-+...
T Consensus 163 ll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~---~e~~~~~~q~k~~ 239 (573)
T COG4987 163 LLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA---TEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5666655555566666677777777777777777677888999999999999999999887765 3444443322222
Q ss_pred HHH---HHHHHHH-HHHHHHHHHHHHH-HhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000560 499 SAI---AFLFWAS-PTLVSVITFGVCI-LLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1421)
Q Consensus 499 ~~~---~~~~~~~-p~~v~~~tF~~~~-~~~~~L~-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1421)
.+. .+...+. ..++....++... .-.+.++ +..+...++.|..+-.-....|.++...-|...|.+|+.+.+..
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 222 2221111 1111111111111 1112233 22222222223222211122346778888999999999999987
Q ss_pred cCCCCCC-CCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCC
Q 000560 573 DNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1421)
Q Consensus 573 ~e~~~~~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~ 650 (1421)
++..... +..+. .+..++++|++|+|+.+ +.+.|+| ||++++||++||+|++|||||||++.|.|-++|+
T Consensus 320 ~~e~~~~~~~~~~--~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 320 KPEVTFPDEQTAT--TGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred CcccCCCccccCC--ccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 7622111 11111 12279999999999976 5689999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccC
Q 000560 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1421)
Q Consensus 651 ~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~ 716 (1421)
+|++ ..+| .+++++|.+.+|++|+|||+.++++- .++...++++..+|++-++..|+|.+|.+||
T Consensus 392 ~G~i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 392 QGSI-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred CCee-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 9997 7776 46899999999999999999999875 4566778899999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCE
Q 000560 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1421)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1421)
.|..||||||||++|||++.+|++++||||||.+||+.|++++.+.+ ....+|||+|+|||++..++.||+|++|++|+
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~Gk 549 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGK 549 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECCe
Confidence 99999999999999999999999999999999999999999998754 44567999999999999999999999999999
Q ss_pred EEEecCchhhhhhhhhHHHHH
Q 000560 797 IEQSGKYEDLIADQNSELVRQ 817 (1421)
Q Consensus 797 i~~~g~~~~l~~~~~~~~~~~ 817 (1421)
|+++|+|++++. .+..+.++
T Consensus 550 iie~G~~~~Ll~-~~g~~~~l 569 (573)
T COG4987 550 IIEEGTHAELLA-NNGRYKRL 569 (573)
T ss_pred eeecCCHHhhhc-cccHHHHH
Confidence 999999999998 45555443
No 93
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.4e-52 Score=521.60 Aligned_cols=504 Identities=14% Similarity=0.154 Sum_probs=364.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1421)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 347 (1421)
+++ .+|+.+++..++.++..++..+.|.+++.+++... .. .....+.+++ +++. ..++.....+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~--~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEEN--FL--GQGSLFSFGG-LCLL---ALLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc--cchHHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Confidence 456 67888888889999999999999999988875221 11 0010111222 2222 22233333444566788
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000560 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1421)
Q Consensus 348 riR~~L~~~Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~ 424 (1421)
++...+...+|+|.++++.. ..++|+++|.++.|++.+.++...+..+....+.+++++++++. +.|..++..++.
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAY-LSVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 88888888899999987653 34899999999999999999876555555555555544444432 232334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHH----HHHHHHHHHHHHHHHHHH
Q 000560 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKL----LRLREIERDSLKKYLYTC 498 (1421)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~--~f~~~I----~~~R~~El~~l~~~~~~~ 498 (1421)
+++.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.|+ ...+++ ++.|+...+..+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 237 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI----F 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----H
Confidence 44444445555666677777778888888999999999999999999854 333333 3333332222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-
Q 000560 499 SAIAFLFWASPTLVSVITFGVCILL---KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN- 574 (1421)
Q Consensus 499 ~~~~~~~~~~p~~v~~~tF~~~~~~---~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e- 574 (1421)
..........+ .+.++.+++. .+.++.+.+++++.+...+..|+..+...+..+.++++|++||.++++.++
T Consensus 238 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~ 313 (555)
T TIGR01194 238 IAAENFGQLLF----FLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNE 313 (555)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11111111111 1111111111 247899999999999999999999999999999999999999999986422
Q ss_pred C-CC--CCCCC-----CCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcC
Q 000560 575 Q-KK--PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1421)
Q Consensus 575 ~-~~--~~~~~-----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG 645 (1421)
+ .. ..+.. +.......|+++|++|+|++.+. ...+.|+| ||++++||+++|+||||||||||+++|+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 314 PEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred ccccccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 1 10 00000 11112356999999999975300 12468999 99999999999999999999999999999
Q ss_pred CccCCCCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCc
Q 000560 646 EIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1421)
Q Consensus 646 ~~~~~~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t 712 (1421)
+++|++|++ .++| .++||+|+|+++++|+++|+ ..+.++++.+++++.+++.++++.+|+|++|
T Consensus 391 ~~~p~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999997 7765 36999999999999999995 2334566777889999999999999999887
Q ss_pred cccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhccCEEEE
Q 000560 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLV 791 (1421)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~D~i~~ 791 (1421)
. .+||||||||++||||++++|+|+|||||||+||+++.+.+.+.+++.. .+++|+|+|||+++.+..||+|++
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 3 7999999999999999999999999999999999999998887665443 468999999999998889999999
Q ss_pred EeCCEEEEe
Q 000560 792 MKDGKIEQS 800 (1421)
Q Consensus 792 l~~G~i~~~ 800 (1421)
|++|++++.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999864
No 94
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-53 Score=502.41 Aligned_cols=431 Identities=24% Similarity=0.383 Sum_probs=329.8
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE-------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~------- 660 (1421)
..++++|.+-+++. ...|++ ||++.+||+++++|.||+|||||+|.|.|.++|++|++ .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 35789999888864 478999 99999999999999999999999999999999999997 78874
Q ss_pred -------EEEEcCCCcC-CCCcHHHHhccCCCCCH-------HHHH----HHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 661 -------KAYVPQSSWI-QTGTIRENILFGKDMRQ-------SFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 661 -------iayv~Q~~~i-~~~Ti~enI~fg~~~~~-------~~y~----~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
|+.|.|+..+ ++.||.|||.+|++... ...+ ++++..++. . .......+|
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---------~--~~~~~v~~L 146 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---------I--DPDTLVGDL 146 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---------C--ChhhhhhhC
Confidence 6999999876 67899999999876432 2211 122211111 0 134567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
|+||||-|+||||++.++++++||||||+|+.+..+++|+.+.+-..+|.++|+|||+++++.. ||+|.||+||+.+..
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999999999999999999999999999999999999998554444579999999999998765 999999999999865
Q ss_pred cCc-hhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHH
Q 000560 801 GKY-EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTV 879 (1421)
Q Consensus 801 g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 879 (1421)
++. +++.. ++
T Consensus 227 ~~~~~~~~~----------------------------------------~~----------------------------- 237 (500)
T COG1129 227 RPTAAETSE----------------------------------------DE----------------------------- 237 (500)
T ss_pred cccccCCCH----------------------------------------HH-----------------------------
Confidence 442 21110 00
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000560 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959 (1421)
Q Consensus 880 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s 959 (1421)
-++.+
T Consensus 238 ---lv~~M------------------------------------------------------------------------ 242 (500)
T COG1129 238 ---LVRLM------------------------------------------------------------------------ 242 (500)
T ss_pred ---HHHHh------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGI 1039 (1421)
Q Consensus 960 ~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~ 1039 (1421)
.|
T Consensus 243 -----------------------vG------------------------------------------------------- 244 (500)
T COG1129 243 -----------------------VG------------------------------------------------------- 244 (500)
T ss_pred -----------------------hC-------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000560 1040 SIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1119 (1421)
Q Consensus 1040 ~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1119 (1421)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-CCCCCccccCCCCC
Q 000560 1120 LFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN-IPSEAPLVIKNSRP 1198 (1421)
Q Consensus 1120 l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~-~~~E~~~~~~~~~~ 1198 (1421)
| +..+ .|. + +
T Consensus 245 ----------------------------------------------------------r--~~~~~~~~-~--------~ 255 (500)
T COG1129 245 ----------------------------------------------------------R--ELEDLFPE-P--------P 255 (500)
T ss_pred ----------------------------------------------------------c--chhhhccc-c--------c
Confidence 0 0000 000 0 0
Q ss_pred CCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh
Q 000560 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278 (1421)
Q Consensus 1199 ~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l 1278 (1421)
+ .-+....++++|++.. ..++|+||++++||.+||.|==|||+|-++++|||.-++.+|+|.+||.++.--++
T Consensus 256 ~-~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 256 E-EGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSP 328 (500)
T ss_pred c-cCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCH
Confidence 0 0011224678887643 25899999999999999999999999999999999999999999999998887766
Q ss_pred H-HHhcccEEEccCCc---c-ccccHhhhcCCC--CCCCHH-HHHHHHHHcCcHHHHHhcc---cccCccccCCCCCCCh
Q 000560 1279 Q-DLRSRLSIIPQDPM---L-FQGTVRTNLDPL--EQHSDQ-EIWEVINKCHLAEIVRQDQ---RLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1279 ~-~LR~~i~iIpQdp~---L-F~gTIR~NLdp~--~~~sde-eI~~aL~~~~L~~~i~~lp---~gLdt~v~e~G~nLSg 1347 (1421)
+ ..+..|+|||-|-- + ..-+|++|+... ..++.. -+...-++.-..+++..+. ...+.++ .+|||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSG 404 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSG 404 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCc
Confidence 5 58889999999862 4 456999999632 111100 1223333333445555442 2344445 46999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|.+|+++|||.|..+|+||||||||-++|..+.+.|.+.|++.. +|.+||+|+-.++.+. -||||+||.+|+|+
T Consensus 405 GNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred hhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999865 5799999999999987 69999999999985
No 95
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-50 Score=507.65 Aligned_cols=500 Identities=15% Similarity=0.160 Sum_probs=349.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1421)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1421)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+.. .. -+.+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~---~~--~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL---LV--LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---hH--HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 566777888888888888888888888774 677788887553211 11 11111111112222222 223334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000560 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1421)
Q Consensus 344 ~~g~riR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1421)
+++.++...+...+|+|.++++. ...++|+++|.++.|++.+..+...+..++...+.+++++++++.. .|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~-~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWL-SPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 45555555566667777776653 2348999999999999999987666677788888887777766653 4356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--c----HHHHHHHHHHHHHHHHHHHHHH
Q 000560 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--W----EQEFLKKLLRLREIERDSLKKY 494 (1421)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~--w----E~~f~~~I~~~R~~El~~l~~~ 494 (1421)
.++++++.+.+...+.++..+..++.++..+++.+.++|.++|++++++.+ . ++.|.+..++.++...+..+
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 230 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT-- 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH--
Confidence 666666666677778888888888999999999999999999999998433 2 33344444444333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000560 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1421)
Q Consensus 495 ~~~~~~~~~~~~~~p~~v~~~tF~~~~~~~~~---L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1421)
......... .++..+.++.+.+.++. .+.+.+.....++..+..|+..+...+..+.+++++++||.+++.
T Consensus 231 --~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 231 --FHLSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred --HHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111 11111122222222211 222222222222333678999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCC
Q 000560 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1421)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~ 650 (1421)
.++.++..+..+. +....++++|++|+|+.+ .+.|+| |+++++||+++|+||||||||||+++|+|+++|+
T Consensus 305 ~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 305 APYKAEFPRPQAF-PDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred ccccccccccccc-CcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5442111111111 112469999999999743 468999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCC
Q 000560 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1421)
Q Consensus 651 ~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~ 717 (1421)
+|++ .++| .++|++|+|.++++|++|| +...+++..++.++.+++..+++. ++|. .+
T Consensus 377 ~G~i-~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~ 446 (547)
T PRK10522 377 SGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----IS 446 (547)
T ss_pred CeEE-EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CC
Confidence 9997 6665 4799999999999999999 445566667777777777655542 2221 24
Q ss_pred CCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhccCEEEEEeCCE
Q 000560 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1421)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1421)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..||+|++|++|+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 789999999999999999999999999999999999998888765543332 4899999999999999999999999999
Q ss_pred EEEe
Q 000560 797 IEQS 800 (1421)
Q Consensus 797 i~~~ 800 (1421)
+.+.
T Consensus 527 i~e~ 530 (547)
T PRK10522 527 LSEL 530 (547)
T ss_pred EEEe
Confidence 9876
No 96
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.3e-51 Score=466.64 Aligned_cols=525 Identities=21% Similarity=0.264 Sum_probs=414.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1421)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1421)
.....+....+++.++..+++..+-.+...++|+.+-+.-|-+-...+ .+. =..+.+.....++++.+.+.--.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~T--Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPT--LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888888888888899887666655443332 222 33344555566666777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC---hHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 000560 343 NRIGIRVRSALTVLIYKRSMAIKFAGPS---SGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLG 414 (1421)
Q Consensus 343 ~~~g~riR~~L~~~Iy~K~L~ls~~~~~---~G~ivnlms~D~~ri~~~~~-----~~h~~w~~plqi~~al~lL~~~lG 414 (1421)
.|+|.++-..|..-||.-+++.....+. ..+.+ .|.+.+..|+. -+.++.-.|+-+++ +|++.-.+|
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG 162 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG 162 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH
Confidence 9999999999999999988654443332 23333 37788877753 34454446765443 456666899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000560 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1421)
Q Consensus 415 ~~a~l~gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~ 494 (1421)
+.+++|.++++++..+|-.+.++- -++-.+..-+|....+..++|..+|+.+|..+...++..+....-+.+..+.
T Consensus 163 -~~a~~ga~iLv~la~ln~~~t~~p---~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~a 238 (580)
T COG4618 163 -LIALAGAIILVVLALLNERATRKP---LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERA 238 (580)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888877766543 3445566677888999999999999999999999999888877777766655
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000560 495 LYTCSAIAFLFWASPTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1421)
Q Consensus 495 ~~~~~~~~~~~~~~p~~v--~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1421)
.........+.-..=.+. .+...|.|..+++++|++.++..--+..-.-.|+......+.++..++.|.+|++++|..
T Consensus 239 sd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 239 SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554443333322222222 234567777788899999999887777777799999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCC
Q 000560 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1421)
Q Consensus 573 ~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 651 (1421)
....+. +.+-+..+..+.+++.++.-+.. ++|++++ ||++++||-++|+||+|||||||.++|.|..+|.+
T Consensus 319 ~p~~~~--~m~LP~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 319 LPAAAE--RMPLPAPQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred CccccC--CCCCCCCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC
Confidence 553222 23333445679999999976654 5799999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------EEEEEcCCCcCCCCcHHHHhc-cCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCC
Q 000560 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1421)
Q Consensus 652 G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~-fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~ 717 (1421)
|.| +++| .|||.||+--+|.|||.|||. |+.+.|.++.-+..+..+.++-+-.+|+|++|.||+.
T Consensus 391 G~V-RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~ 469 (580)
T COG4618 391 GSV-RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469 (580)
T ss_pred CcE-EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC
Confidence 998 8876 589999999999999999997 7777787776666677777778889999999999999
Q ss_pred CCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEE
Q 000560 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1421)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1421)
|.+|||||||||+||||+|.||.+++||||-|+||.+-+..+.+.+..-..+|.|+|+|||+++.+..+|+|++|+||++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999999999999987777766554555679999999999999999999999999999
Q ss_pred EEecCchhhhh
Q 000560 798 EQSGKYEDLIA 808 (1421)
Q Consensus 798 ~~~g~~~~l~~ 808 (1421)
...|+-+|+++
T Consensus 550 ~~FG~r~eVLa 560 (580)
T COG4618 550 AAFGPREEVLA 560 (580)
T ss_pred HhcCCHHHHHH
Confidence 99999988876
No 97
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.2e-50 Score=547.08 Aligned_cols=465 Identities=20% Similarity=0.223 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000560 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1421)
Q Consensus 345 ~g~riR~~L~~~Iy~K~L~ls~---~~~~~G~ivnlms~D~~ri~~~~~-~~h~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1421)
.+.+.-..+-..++++.++.+. ....+|+|+|.++.|++.+.+.+. .+..+....+.++..+++++..-+ +.+++
T Consensus 952 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p-~l~l~ 1030 (1490)
T TIGR01271 952 TLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP-YIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444455555555555432 234889999999999999998764 355555566666666665554444 43333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1421)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~ 500 (1421)
.+.++++...+..+..+..+..++.....+....+..+|.++|+.+||.|+||+.|.++..+.-+...+...........
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555556666667777888889999999999999999999999888776644322111111110001
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-C
Q 000560 501 IAFLFWA-SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-P 578 (1421)
Q Consensus 501 ~~~~~~~-~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~ 578 (1421)
..+.... ...++..+++. .+.....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.++..+ .
T Consensus 1111 l~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~ 1188 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP 1188 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 0000000 00111111111 111123456666666666777788888888888999999999999999997654211 0
Q ss_pred CC--------------C-C-C-CCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHH
Q 000560 579 IT--------------E-P-T-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL 640 (1421)
Q Consensus 579 ~~--------------~-~-~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl 640 (1421)
.+ . . + ..+....|+++|++|+|+++ ..++|+| ||+|++||++||||++|||||||+
T Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred cccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC------CcceeeccEEEEcCCCEEEEECCCCCCHHHHH
Confidence 00 0 0 0 11234579999999999864 3579999 999999999999999999999999
Q ss_pred HHHcCCccCCCCcEEEECC-------------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhc
Q 000560 641 SSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWA 707 (1421)
Q Consensus 641 ~~ilG~~~~~~G~vi~~~g-------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~ 707 (1421)
++|+|.++ .+|+| .++| +++|+||+|.+|+|||||||....+++++...++++.|+|.+.+..+|
T Consensus 1263 ~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271 1263 SALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred HHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 99999997 78987 7776 479999999999999999998777778888999999999999999999
Q ss_pred CCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccC
Q 000560 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD 787 (1421)
Q Consensus 708 ~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D 787 (1421)
+|.+|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.+.+ .+....+++|||+|||+++.+..||
T Consensus 1341 ~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~ti~~~D 1419 (1490)
T TIGR01271 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEALLECQ 1419 (1490)
T ss_pred cccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999877765 5566678999999999999999999
Q ss_pred EEEEEeCCEEEEecCchhhhhhhhhHHHHHHHHhh
Q 000560 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1421)
Q Consensus 788 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 822 (1421)
+|++|++|+|++.|+++++++ .+..|.+++....
T Consensus 1420 rIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1420 QFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 999999999999999999997 5677877776544
No 98
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-50 Score=522.49 Aligned_cols=452 Identities=20% Similarity=0.224 Sum_probs=346.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000560 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQV 1029 (1421)
Q Consensus 951 ~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~-~~~~~ 1029 (1421)
....|.+.-..+-..++++.++..-+--..++.|+|+|-++.|.+.+++..++. ..+...-++++..+.++.. ..|.
T Consensus 266 ~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~s- 343 (1381)
T KOG0054|consen 266 SFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPS- 343 (1381)
T ss_pred HHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChH-
Confidence 345666666666677777888877777677889999999999999999876643 3333333444433333322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000560 1030 FPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT 1109 (1421)
Q Consensus 1030 ~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1109 (1421)
.++.+.++++++-++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++..+.-++-.+........
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344455555666666667777777777778888999999999999999999999998877666544433332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCC
Q 000560 1110 MEWLCLRINLLFNFAFFLVLIILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSE 1188 (1421)
Q Consensus 1110 ~~wl~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E 1188 (1421)
.....+....... ++.++.+.... ...+..++..+-.++++.-.+...+..+-..+..+-+..+|++|+.+|...++-
T Consensus 424 ~~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 424 SALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 2222222222222 22222222222 335566776776677666666666666666667777779999999999976544
Q ss_pred CccccCCCCCCCCCCCCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEE
Q 000560 1189 APLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267 (1421)
Q Consensus 1189 ~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ 1267 (1421)
.+...+. .+.-+.+-.|+++|.+++++++ .++.|+||||+|++|+.+||||++|||||||+++++|..+..+|++.
T Consensus 503 ~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~ 579 (1381)
T KOG0054|consen 503 DPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA 579 (1381)
T ss_pred Ccccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE
Confidence 3322111 1122344569999999999864 34599999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1268 IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
++|. ++|+||.|.+|+|||||||-++.+++++.-.++++.|+|.+.++.+|.|-.|.|||+|.||||
T Consensus 580 v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 580 VNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred EcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 9984 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHH-HHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||||++||||+.++++|.+||.|-|+||..+.+.| ++.|+...+++|+|.+||.++.+.+||+|+||++|+|+
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999998765 67788888999999999999999999999999999984
No 99
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-52 Score=468.12 Aligned_cols=521 Identities=17% Similarity=0.282 Sum_probs=380.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000560 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVE--SLTQRQWYFGANRIGIRVRSALTVLIYKRSM 362 (1421)
Q Consensus 285 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~l~~~~~~~~~~~~g~riR~~L~~~Iy~K~L 362 (1421)
.+.-++...-|.+.+.+++-+..+.. +.+..-+.+++..|+-.... .+..+--.|..-++..-.--.+-..+|++.+
T Consensus 225 ~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh 303 (790)
T KOG0056|consen 225 IIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLH 303 (790)
T ss_pred HHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHH
Confidence 33344444558899999888875543 33332333333333221110 1111111111111111111123334455555
Q ss_pred ccccC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 363 AIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANR 438 (1421)
Q Consensus 363 ~ls~~---~~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~ 438 (1421)
.||-. .|.+||+...|..-...+. +..+ +..+--..+.++++++..+....+|-.+..+..|.+..-++..+...
T Consensus 304 ~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeW 382 (790)
T KOG0056|consen 304 NLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEW 382 (790)
T ss_pred hhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehh
Confidence 55432 3578999988887666655 3333 33444445667777776666666555555555555555556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 439 QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ----EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1421)
Q Consensus 439 ~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~----~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~ 514 (1421)
..++|+++..+-.+--..-.+.|-|..++|.|+-|+ .+.+.|.+.-++|-+.+.....+...-+.++-.. +...
T Consensus 383 RTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg--ll~g 460 (790)
T KOG0056|consen 383 RTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG--LLAG 460 (790)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--Hhhh
Confidence 777887776654443344557778899999999886 4777787878888776655444433322222111 2222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEE
Q 000560 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDI 593 (1421)
Q Consensus 515 ~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~i 593 (1421)
..+.+|....+.++.+...-.+.++-.|.+|++.+.....++....+-++|+-+.|++++ -.|.....|-....+.|++
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~f 540 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEF 540 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEE
Confidence 335556666677999998888888899999999999999999999999999999998766 2222222333334578999
Q ss_pred EeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------------
Q 000560 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1421)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------------- 659 (1421)
+|++|+|++. +|+|+| ||++++|+.+|+|||+|+||||+++.+.+.++..+|.+ .++|
T Consensus 541 snvtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 541 SNVTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIRNVTQSSLRS 612 (790)
T ss_pred EEeEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHHHHHHHHHHH
Confidence 9999999865 799999 99999999999999999999999999999999999997 8877
Q ss_pred EEEEEcCCCcCCCCcHHHHhccCCCC--CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhcc
Q 000560 660 KKAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1421)
Q Consensus 660 ~iayv~Q~~~i~~~Ti~enI~fg~~~--~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1421)
.||.|||+..+||.||..||.+|++- +++-| ++.++...++.+-.+|+|..|.+||||-.||||+||||++||++.+
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~~Asneevy-aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY-AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred hcCcccCcceeecceeeeheeecCCCCChHHHH-HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 47999999999999999999999874 44444 4567788899999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHH
Q 000560 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1421)
Q Consensus 738 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1421)
+|.|++|||.|||||.++.+.| +.++....+++|.|+|.|+++.+-+||.|++++||+|++.|+++|+.+..++.+.+.
T Consensus 692 ~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 9999999999999999998887 567888889999999999999999999999999999999999999998556666665
Q ss_pred HH
Q 000560 818 MK 819 (1421)
Q Consensus 818 ~~ 819 (1421)
-.
T Consensus 771 Wq 772 (790)
T KOG0056|consen 771 WQ 772 (790)
T ss_pred HH
Confidence 43
No 100
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-50 Score=468.79 Aligned_cols=435 Identities=24% Similarity=0.399 Sum_probs=332.2
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE-------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~------- 660 (1421)
..+++++.+-.++. ...+++ ||++++||++|++|+||+|||||+++|.|.++|++|++ .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46888888888763 245677 99999999999999999999999999999999999997 88884
Q ss_pred -------EEEEcCCCcCC-CCcHHHHhccCCCCC----------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 661 -------KAYVPQSSWIQ-TGTIRENILFGKDMR----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 661 -------iayv~Q~~~i~-~~Ti~enI~fg~~~~----------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
||+|.|++.+. +.||.|||..|.+-. .++.++..+.+++.-|. .++..+||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-----------~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-----------DAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-----------cceeecCC
Confidence 69999998874 679999999998632 23344455555554443 25678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
=||||||.|-+|||++|+++|||||||.|-|...+++|+.+-+-...|+|||+|||.++++.. ||++.||++|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg-- 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG-- 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe--
Confidence 999999999999999999999999999999999999998655545579999999999998766 99999999999763
Q ss_pred CchhhhhhhhhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000560 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1421)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1421)
+++...+....+..+++
T Consensus 221 t~~~~~~~t~~ela~lM--------------------------------------------------------------- 237 (501)
T COG3845 221 TVDPVAETTEEELAELM--------------------------------------------------------------- 237 (501)
T ss_pred eecCCCCCCHHHHHHHh---------------------------------------------------------------
Confidence 32210000000000000
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhHHHHHhhccccccccccchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1421)
Q Consensus 882 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1421)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1421)
Q Consensus 962 l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~ 1041 (1421)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 000560 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLF 1121 (1421)
Q Consensus 1042 ~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1121 (1421)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCC
Q 000560 1122 NFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPE 1201 (1421)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~ 1201 (1421)
..+ .+ ..+.+ . ++.
T Consensus 238 -------------vG~-~v-------------------------------------------~~~~~--------~-~~~ 251 (501)
T COG3845 238 -------------VGR-EV-------------------------------------------VLRVV--------K-PPS 251 (501)
T ss_pred -------------cCC-cc-------------------------------------------ccccc--------c-CCC
Confidence 000 00 00000 0 111
Q ss_pred CCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeC-CCCChHH
Q 000560 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI-SMIGLQD 1280 (1421)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI-~~i~l~~ 1280 (1421)
-|..--++++|+++.=+.+ -..+++|||++++||.+||.|-.|-|-+-|+.+|.|+..|.+|+|.++|.|+ ...+...
T Consensus 252 ~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 1233458999999875433 3579999999999999999999999999999999999999999999999998 6667777
Q ss_pred Hhc-ccEEEccCCc----cccccHhhhcCCCCCC----------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1281 LRS-RLSIIPQDPM----LFQGTVRTNLDPLEQH----------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1281 LR~-~i~iIpQdp~----LF~gTIR~NLdp~~~~----------sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
.|. .+++||.|.+ ..+-|+.+|+-+.... .-.++.+..++. +.+| .=.+.+.++++ .+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l-i~~f-dVr~~~~~~~a----~~L 404 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL-IEEF-DVRAPSPDAPA----RSL 404 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH-HHHc-CccCCCCCcch----hhc
Confidence 554 6999999984 5667999998542211 112232222111 1111 00123344444 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||+.|++-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|+.|+-+++.+.. ||||.||.+|+|+
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 9999999999999999999999999999999999999999988764 68899999999999865 9999999999985
No 101
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.8e-48 Score=491.92 Aligned_cols=501 Identities=17% Similarity=0.169 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354 (1421)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~riR~~L~ 354 (1421)
.++...++.++.+++....|++...+++.+.+.+. ... ...+.+++++++.. +......|..+++..++|.-+.
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~----~~~~~~~~~~~~~~~~~r~~l~ 171 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPAS----FINSAIKYLLKELKLRFRVRLT 171 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888899999999999999998764332 001 10111222222333 3333344446666777777777
Q ss_pred HHHHHHHhcc----c--cCCCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000560 355 VLIYKRSMAI----K--FAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1421)
Q Consensus 355 ~~Iy~K~L~l----s--~~~~~~G~ivnlms~D~~ri~~~~~~-~h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~ 427 (1421)
..++++.++- + ..+..+|++++.+++|++.+.+.... +..+...++.++.+++.|+..++|..++..++.+.+
T Consensus 172 ~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 172 RYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7777666542 1 11124799999999999999988754 556666777888888888877885565666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1421)
Q Consensus 428 ~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~~f~~~I~~~R~~El~~l~~~~~~~~~~~~~~~~ 507 (1421)
.+.+...+.+...+..++..+..++-....+|.++|++.||.|+-|+...++..+.=++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77777888888899999999999999999999999999999999999888777665444444444444333333322222
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000560 508 SP----TLVSVITFGVCILL-K----TPLTSGAVLSA----LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1421)
Q Consensus 508 ~p----~~v~~~tF~~~~~~-~----~~L~~~~vft~----lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1421)
.. ..+..+..+..++. . +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11212222232332 1 46887765442 334667789999999999999999999999999997533
Q ss_pred C-C-----C-CCCC-----------------CCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEE
Q 000560 575 Q-K-----K-PITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1421)
Q Consensus 575 ~-~-----~-~~~~-----------------~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~iv 629 (1421)
+ . + .... .........|+++|++|+|+.+ .+.+++ ||++++||+++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~Iv 484 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLIC 484 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEE
Confidence 1 0 0 0000 0000123459999999998633 368999 9999999999999
Q ss_pred ccCCCChHHHHHHHcCCccCCCCcEEEEC--CEEEEEcCCCcCCCCcHHHHhccCCC--------CCHHHHHHHHHHhcc
Q 000560 630 GSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCAL 699 (1421)
Q Consensus 630 G~~GsGKSTLl~~ilG~~~~~~G~vi~~~--g~iayv~Q~~~i~~~Ti~enI~fg~~--------~~~~~y~~v~~~c~l 699 (1421)
||||||||||+++|+|++++.+|++ ..+ ..++||||+|+++++|++|||.++.. ..+++.+++++.+++
T Consensus 485 G~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 485 GPNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999986 554 46999999999999999999998742 345566778888888
Q ss_pred chhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCC
Q 000560 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1421)
Q Consensus 700 ~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~ 779 (1421)
.+.++. +.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+ .. .|+|+|+|||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~--~~~tvI~isH~ 638 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE--FGITLFSVSHR 638 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH--cCCEEEEEeCc
Confidence 876666 888888776 57799999999999999999999999999999999999988877643 33 38999999999
Q ss_pred ccchhccCEEEEEeC
Q 000560 780 LEFLDAADLVLVMKD 794 (1421)
Q Consensus 780 ~~~l~~~D~i~~l~~ 794 (1421)
++.++.||+|++|++
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999989999999973
No 102
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3e-50 Score=459.96 Aligned_cols=215 Identities=38% Similarity=0.670 Sum_probs=207.8
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.|+.+++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997655679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000560 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1421)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1421)
+||||+|.+|++|+++|++++...+++++|++++.+++.+++.++|+++|+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|+|||||++||+.++..+++.|++.+++||||+||||++++..||||++|++|+|+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~ 215 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVR 215 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEe
Confidence 99999999999999999999999988899999999999999999999999999985
No 103
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=448.56 Aligned_cols=244 Identities=21% Similarity=0.367 Sum_probs=207.9
Q ss_pred HhhhHHHHHHHhhcCCCCCccccC------CC---CCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEE
Q 000560 1171 NKMISVERILQFTNIPSEAPLVIK------NS---RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1421)
Q Consensus 1171 ~~~~sveRi~~~~~~~~E~~~~~~------~~---~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIV 1241 (1421)
..+.+++|+.+|...+.|.....+ +. ..+..||..+.|+++|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 345677777777766554322111 11 113469999999999999999765567999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCC--CCChHHHhcccEEEccCCccccccHhhhcCC---CCCCCH
Q 000560 1242 GRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP---LEQHSD 1311 (1421)
Q Consensus 1242 GrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp---~~~~sd 1311 (1421)
||||||||||+++|+|+++ |++|+|.|||+|+. ++++.++|++++||||+|.+|++|+++|++. ...+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 4667889999999999999999999999983 233555
Q ss_pred HHH-----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000560 1312 QEI-----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386 (1421)
Q Consensus 1312 eeI-----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1386 (1421)
++. .++++.++++ +++++.+++.|.+||||||||+|||||++++|+||+|||||++||++++..+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 4566777764 3456788899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1387 IREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1387 I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++.++++|+|+||||++++.+ ||||+||++|+|+
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999889999999999999988 9999999999984
No 104
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=411.76 Aligned_cols=447 Identities=22% Similarity=0.296 Sum_probs=342.4
Q ss_pred HHHHHhccccC---CCChHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000560 357 IYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1421)
Q Consensus 357 Iy~K~L~ls~~---~~~~G~ivnlms~D~~ri~~~~~~~-h~~w~~plqi~~al~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1421)
.|++.+.||-. ++.+|.+.--|.--.+-|+...+++ ..+....+++.++..++++..||+.+...++.+++...+.
T Consensus 21 ~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ft 100 (497)
T COG5265 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFT 100 (497)
T ss_pred HHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhh
Confidence 34455444421 2245544444444444555555543 3444566899999999999999888887777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 433 TPLANRQERFHSMIMEAKDAR-IKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCSAIAFLFWA 507 (1421)
Q Consensus 433 ~~~~~~~~~~q~~~m~~~D~R-v~~~sE~L~~ik~IK~~~wE~~f~~~I~~----~R~~El~~l~~~~~~~~~~~~~~~~ 507 (1421)
.....+--.++++.. ..|.. -...-+.|-|-.++|.|+=|+.+..+-.+ .++.+++......++...-..++..
T Consensus 101 v~~s~wr~~~rr~~n-~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~ 179 (497)
T COG5265 101 VIVSDWRTDFRRLMN-NADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST 179 (497)
T ss_pred eeehhhhHHHHHhhh-hhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666555555544 44554 45666889999999999999876665444 4444444333322222222222111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC-
Q 000560 508 SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK- 585 (1421)
Q Consensus 508 ~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~- 585 (1421)
. +....+....-+..+.+|.+...-.-++...+..|++.+......+-|++...++..+.+..+- ..+...-++-.
T Consensus 180 ~--l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~ 257 (497)
T COG5265 180 G--LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP 257 (497)
T ss_pred H--HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc
Confidence 1 1112233333345678999999999999999999999999999999999999999998887654 22221111111
Q ss_pred CCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE----
Q 000560 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---- 660 (1421)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~---- 660 (1421)
.....|.+++++|.|+++ .|.|++ ++.+++|+.++++|++|+||||+++.|.+.+++.+|.+ .++|+
T Consensus 258 ~~~g~v~F~~V~F~y~~~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qdir~ 329 (497)
T COG5265 258 VRLGAVAFINVSFAYDPR-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRD 329 (497)
T ss_pred cccceEEEEEEEeecccc-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchhHHH
Confidence 334679999999999875 789999 99999999999999999999999999999999999987 77763
Q ss_pred ---------EEEEcCCCcCCCCcHHHHhccCCCCC-HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 661 ---------KAYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 661 ---------iayv~Q~~~i~~~Ti~enI~fg~~~~-~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
||.|||+..+||.|+..||.+|++-. ++....+.++.++..-++.+|+|.+|.|||+|-.||||+||||+
T Consensus 330 vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred hHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 79999999999999999999998753 44556677888888999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhh
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~ 810 (1421)
+||++.++|+|++|||.|||||.||.+.|- ..++...+|+|.+++.|+++.+-.||.|+||+||+|++.|+++|+++ .
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq-~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~-~ 487 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQ-AALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA-A 487 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHH-HHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH-c
Confidence 999999999999999999999999987774 45667778999999999999999999999999999999999999998 4
Q ss_pred hhHHHH
Q 000560 811 NSELVR 816 (1421)
Q Consensus 811 ~~~~~~ 816 (1421)
++.+.+
T Consensus 488 ~g~ya~ 493 (497)
T COG5265 488 GGLYAE 493 (497)
T ss_pred CChHHH
Confidence 555443
No 105
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2.8e-46 Score=432.03 Aligned_cols=190 Identities=23% Similarity=0.374 Sum_probs=158.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|.++||+|+|.++ +.++++++|-|.++++|++|||||+|||||++++.+.+.|+.|.+.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 48999999999876 47999999999999999999999999999999999999999998865422 1334
Q ss_pred EEccC---CccccccHhhhcCC-CC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1287 IIPQD---PMLFQGTVRTNLDP-LE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1287 iIpQd---p~LF~gTIR~NLdp-~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
..-|. -.-++-|.-+++.| +. .-..+++...|.++||... ..+.++ ++||+|||.|++.||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd------~q~~p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGD------AQVVPM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcc------ccccch----hhcccccchhHHHHHHHhc
Confidence 44443 34566777777765 34 3567788899999999642 334555 3699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
.|.||+|||||++||.+|-..+.++|.+. ..+||+|+|+...|.. +++|++.++|.+
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCce
Confidence 99999999999999999999999999874 5699999999999976 889998888765
No 106
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=413.57 Aligned_cols=261 Identities=21% Similarity=0.308 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEEeeEEEeCCc
Q 000560 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAR 603 (1421)
Q Consensus 525 ~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~i~~~~fsw~~~ 603 (1421)
++++|+++|++++.|+.+..|+..+|..... .+|+++|+..+| +...+.+ ..+....|+++|++++|+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 4689999999999999999999988876543 579999998776 2211111 12334679999999999743
Q ss_pred ccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEE---------------CCEEE
Q 000560 604 EENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKV---------------HGKKA 662 (1421)
Q Consensus 604 ~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~---------------~g~ia 662 (1421)
..+.|++ ||+|++||+++|+|+||||||||+++|+|+++ |++|++ .+ .+.++
T Consensus 94 ------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i~ 166 (329)
T PRK14257 94 ------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRIG 166 (329)
T ss_pred ------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccEE
Confidence 3468999 99999999999999999999999999999986 468976 33 34689
Q ss_pred EEcCCCcCCCCcHHHHhccCCCCC----HH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 663 YVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 663 yv~Q~~~i~~~Ti~enI~fg~~~~----~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
||||+||++++|++|||.|+..++ ++ .|+++++.|+|..+++ +.+++++.+||||||||++||||
T Consensus 167 ~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 167 MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999875322 22 2677788888765543 56789999999999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhhh
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIAD 809 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1421)
++++|+|+||||||+|||+++.+++ .+++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999998874 5677777778999999999999877 999999999999999999998763
No 107
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-42 Score=397.65 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=163.0
Q ss_pred CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhc
Q 000560 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1421)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1283 (1421)
+...+++.+|+|.|.|+.++.++++++.++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3446999999999999887899999999999999999999999999999999999999999888765 67
Q ss_pred ccEEEccCCccccccHhhhc---C----CCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1284 RLSIIPQDPMLFQGTVRTNL---D----PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NL---d----p~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|++-.|.-+=| ..-|. | -++..++||+.+.|...|+..-+.. .+ + ..||||||-|+++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~-----~s-i----~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELAL-----QS-I----ASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhh-----cc-c----cccCCcchhHHHHH
Confidence 899999976533 22222 1 1233499999999999888654432 22 2 35999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
-....+|.+|||||||++||.++-..+-++|+. | +.-||+|+|+.+.+.. |+.+++.++|+|.
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F-~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-F-NGGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHh-c-CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 999999999999999999999999999999987 4 3469999999999975 9999999999873
No 108
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-43 Score=385.98 Aligned_cols=203 Identities=31% Similarity=0.497 Sum_probs=179.3
Q ss_pred EEEEeeeeeeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC---hHHH
Q 000560 1208 IELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDL 1281 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~---l~~L 1281 (1421)
|+++||++.|... ...+|+||||+|++||+.||+|+||||||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999762 346999999999999999999999999999999999999999999999999888776 5667
Q ss_pred hcccEEEccCCcccc-ccHhhhcC-CCC--CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1282 RSRLSIIPQDPMLFQ-GTVRTNLD-PLE--QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
|++||+|+|++.|++ -||.+|+. |.. ..+.+ .+.+.|+.+||.|...+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999997 69999997 432 34444 4567888888877655444 57999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++.. -|-|+++|||.++.+++ ||||.||++|+|+
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv 221 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE
Confidence 99999999999999999999999999999999988643 47899999999999977 9999999999985
No 109
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-42 Score=387.03 Aligned_cols=216 Identities=59% Similarity=0.946 Sum_probs=204.9
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975444699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000560 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1421)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1421)
+|+||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++..++.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|+|||||++||+.+...+.+.|++..++.|||+++|+++.+..||+|++|++|+++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 99999999999999999999999877789999999999999999999999999974
No 110
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-43 Score=365.82 Aligned_cols=202 Identities=29% Similarity=0.446 Sum_probs=179.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC-CChHHHhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-IGLQDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~-i~l~~LR~~i 1285 (1421)
-|+++|++.+|... .||||||++|++||++.|+||||||||||+++|.++-+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 59999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEEccCCccccc-cHhhhcCCCC----CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLE----QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~----~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
|+|+|...||+- |+-+|+.... ..+ .+.-.+.|+++||.|....-|. .|||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999976 9999986321 222 2334567899999988777664 5999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||.-+|+++++|||||+|||+.-..+.+++++.. .|.|+|+|||.+....+ +|||+.||+|+|+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii 215 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE
Confidence 99999999999999999999999999999999865 57899999999999977 9999999999874
No 111
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.6e-42 Score=392.57 Aligned_cols=218 Identities=49% Similarity=0.782 Sum_probs=205.0
Q ss_pred CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhc
Q 000560 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1421)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1283 (1421)
..|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754346999999999999999999999999999999999999999999999999999998889999
Q ss_pred ccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876545677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
++|+|||||++||+++...+.+.+++..+++|+|+++|+++.+..||||++|++|+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~ 233 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999877789999999999999899999999999974
No 112
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-41 Score=382.80 Aligned_cols=214 Identities=31% Similarity=0.552 Sum_probs=198.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+.+.+++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997543 34566788888889999999999999999888888999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 215 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999887789999999999999889999999999974
No 113
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.1e-41 Score=371.01 Aligned_cols=202 Identities=60% Similarity=0.964 Sum_probs=183.9
Q ss_pred CCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH
Q 000560 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1421)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1281 (1421)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +......||+||+||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998765556665555543 234556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|++|+|||||++||+++...+.+.|++..+++|+|+++|+++.+..||+|++|++|+++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999887789999999999999889999999999973
No 114
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-41 Score=353.90 Aligned_cols=207 Identities=28% Similarity=0.426 Sum_probs=185.4
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc-----cEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-----GRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~-----G~I~IDG~dI~~--i~l 1278 (1421)
..++++|+++.|.. ..+|+|||+.|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 359999999999999999999999999999999999999875 999999999987 568
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCCC---C----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
-.||+++|+|.|.|.-|..||++|+.... . .-||-+.++|+++.|||.|.. .|+ +.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~----~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLH----KSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hhh----CCccCCChhHHH
Confidence 89999999999999999999999997542 1 224557889999999999864 343 445679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||||.-+|+||+||||||+||+-+...|.+.|.+..++-|||+|||.+.-... +|+...+..|+++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 999999999999999999999999999999999999999899999999999998754 8999999999875
No 115
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=352.24 Aligned_cols=203 Identities=30% Similarity=0.382 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.|+++|.+-+|.. ..+|++ |++|++||+++||||+||||||||+||.|+.++++|++ .++|
T Consensus 2 mi~i~~l~K~fg~--------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC--------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 4788999888864 468999 99999999999999999999999999999999999997 8887
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCCC----CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~~----~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
++|+|+|+.-+| ..||.|||..+.- ..+ ++-.+.++..+|.+... ..+.+|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHH
Confidence 368999998876 6799999998732 222 22233444444443332 5677999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCch
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1421)
||||+|||||+.+|+++|+|||||||||+....+.+-+......|.|.|+|||++.|... ||||+.|++|+|+++|+++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999988887544445578999999999999987 9999999999999999999
Q ss_pred hhhhhhhh
Q 000560 805 DLIADQNS 812 (1421)
Q Consensus 805 ~l~~~~~~ 812 (1421)
++..++..
T Consensus 222 ~~f~~p~~ 229 (240)
T COG1126 222 EFFDNPKS 229 (240)
T ss_pred HHhcCCCC
Confidence 99875443
No 116
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1e-40 Score=372.22 Aligned_cols=216 Identities=33% Similarity=0.537 Sum_probs=198.8
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965334599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999754 2345667888999999999999999999999988889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||||++||.++...+.+.|++..+++|||+++|+++.+..||+|++|++|+++
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 999999999999999999999999876668999999999988789999999999974
No 117
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=374.09 Aligned_cols=215 Identities=38% Similarity=0.624 Sum_probs=199.7
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|.|+++|++++|+.. +++++|+||++++||++||+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999643 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCccccccHhhhcCCCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1286 SIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1286 ~iIpQdp~LF~gTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
+|+||+|.+|++|+++|+.... ...++++.++++.+++.+++..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345678888999999999999999999999888889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1365 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|+|||||++||..+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|+++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKII 216 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEE
Confidence 999999999999999999999999876789999999999999889999999999973
No 118
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-40 Score=373.83 Aligned_cols=214 Identities=34% Similarity=0.540 Sum_probs=198.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
+||+|.+|+.|+++|+... ...+.+++.+.++.+++.+++..+|.|+++.......+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999764 334566777888889999999999999999888888999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||++||..+...+.+.|++..++.|||+++|+++.+..||+|++|++|+++
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~ 215 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIV 215 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEe
Confidence 9999999999999999999999887889999999999999889999999999974
No 119
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-39 Score=407.99 Aligned_cols=189 Identities=26% Similarity=0.325 Sum_probs=160.6
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--CCccEEEEcCeeCCCCChHHHhcccEEEccCC-cccc
Q 000560 1220 TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQ 1296 (1421)
Q Consensus 1220 ~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~ 1296 (1421)
+....|+|||=-++||--.|++|.||||||||++.|.+-.+ ..+|+|+|||.+..+ +..++++|||.|++ ++=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999999864 347999999998765 77999999999977 5656
Q ss_pred ccHhhhcCC------CCCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC-CE
Q 000560 1297 GTVRTNLDP------LEQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK-RI 1365 (1421)
Q Consensus 1297 gTIR~NLdp------~~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~-~I 1365 (1421)
-||||-|.. -.+.+++| +.++.+..+|.++- |..||..|..||..||.|+.||--|..|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699999853 13445554 45566666665543 56799989999999999999999999999 89
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh--hccCEEEEEeCC
Q 000560 1366 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV--IDNDLVLVLDEG 1418 (1421)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti--~~~DrIlvL~~G 1418 (1421)
|.||||||+||+++...|.+++|+.. .|+||++.-|+++.. +.+|+++.|++|
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999999864 789999999998853 569999999875
No 120
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.3e-40 Score=370.95 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=197.9
Q ss_pred CCCcEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHh
Q 000560 1204 SSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR 1282 (1421)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999643 23599999999999999999999999999999999999999999999999999888777888
Q ss_pred cccEEEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1283 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
++++|+||+|.+|++|+++|++.. ...+.+++++..+..++.+++..+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999853 3344556677777788899999998889988888899999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCee
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~I 1420 (1421)
+|++|||||||++||+++...+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999985
No 121
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-40 Score=370.92 Aligned_cols=213 Identities=38% Similarity=0.625 Sum_probs=198.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999753 345677888899999999999999999999998888999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1367 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||++||+++...+.+.|++..++.|||+++|+++.+..||++++|++|+++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~ 214 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIV 214 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999876688999999999999889999999999974
No 122
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.9e-40 Score=372.06 Aligned_cols=214 Identities=35% Similarity=0.604 Sum_probs=197.1
Q ss_pred EEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1208 IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
|+++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccccccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000560 1287 IIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1421)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1421)
|+||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||+|||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 33456778888888999999999999999998888899999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1366 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|+|||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|+++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~ 216 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999876789999999999999889999999999973
No 123
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=362.98 Aligned_cols=197 Identities=30% Similarity=0.445 Sum_probs=173.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+.+ + ||+||||++++||.+||+||||||||||+++++|++.|++|+|.++|.+++.... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 4 9999999999999999999999999999999999999999999999998776432 57999
Q ss_pred EEccCC---ccccccHhhhcCCCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1287 IIPQDP---MLFQGTVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1287 iIpQdp---~LF~gTIR~NLdp~~-----------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
||||.. .-|.-||++-+.... ..+.+++.+||+++++.++. |.++++ |||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHHH
Confidence 999965 457889999875421 12247899999999999875 556765 99999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
+.|||||+++|++|+|||||+++|+.++..|.+.|++..+ ||||++|+|+++.+++ +|+|+.|.+..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 9999999999999999999999999999999999988764 8999999999999976 99999998653
No 124
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-40 Score=354.78 Aligned_cols=202 Identities=29% Similarity=0.441 Sum_probs=174.2
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---H-
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L- 1281 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L- 1281 (1421)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++-++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996543 36999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcccEEEccCCccccc-cHhhhcC-C--CCCCC----HHHHHHHHHHcCcHHHHH-hcccccCccccCCCCCCChhHHHH
Q 000560 1282 RSRLSIIPQDPMLFQG-TVRTNLD-P--LEQHS----DQEIWEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~s----deeI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
|++||+|+|+..|++. |++||+. | +.... ++...+.++.+++.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5579999999988866 9999987 2 22222 345666677778876543 223 4599999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCee
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~I 1420 (1421)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999874 37899999999999999999999999974
No 125
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.4e-40 Score=360.93 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=183.0
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcc
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1421)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
++|+||+|.+|++|+++|+.+....++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHHc-CCcEEEEEecChhhhhccCEEEEEeCCe
Q 000560 1365 ILVLDEATASIDTATDNVIQQ-TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~-~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1419 (1421)
+++|||||++||.++.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566553 4689999999999998899999999996
No 126
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.8e-40 Score=366.63 Aligned_cols=202 Identities=24% Similarity=0.363 Sum_probs=176.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1284 (1421)
|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434599999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEccCCcccc-ccHhhhcCCC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++|+||+|.+|. .|+++|+... + ...++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999999632 1 113456788899998876654433 36999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
|||+++|++|+|||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998763 47899999999999875 899999999986
No 127
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.3e-40 Score=364.18 Aligned_cols=202 Identities=32% Similarity=0.514 Sum_probs=178.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCc-cccccHhhhcC----C----CCCCC--HH-HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1287 IIPQDPM-LFQGTVRTNLD----P----LEQHS--DQ-EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1287 iIpQdp~-LF~gTIR~NLd----p----~~~~s--de-eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
|+||++. -|.-||+|-+. | +...+ |+ .+.+||+.+++.++..+ .+. .||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-------~~~----~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-------PVD----ELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-------ccc----ccChhHHHHHH
Confidence 9999974 45558888764 2 22222 33 47788999999887643 343 49999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhh-hccCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti-~~~DrIlvL~~G~Iv 1421 (1421)
|||||.++|+||+|||||++||....-.+++.+++.. ++.|||+|.|+++.. ..||++++|++|+|+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999865 469999999999876 569999999999984
No 128
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=352.39 Aligned_cols=201 Identities=30% Similarity=0.434 Sum_probs=179.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+|+||+++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999974 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
|-|..-||.. ||.+|+..-. ..+ ++++.|.|+.++|. +|..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 9999996322 233 44567788888885 3665555 359999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhh-hccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti-~~~DrIlvL~~G~Iv 1421 (1421)
||..+|+||+||||.++||+-|...+|+-+.+.. -++|+|+|||+++.. .-+|||.||++|+|+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence 9999999999999999999999999999887643 378999999999976 559999999999985
No 129
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=8.1e-37 Score=368.77 Aligned_cols=467 Identities=20% Similarity=0.190 Sum_probs=326.7
Q ss_pred cchhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChh------hHHHHhhchhhHhhhh
Q 000560 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS------RILNRCSTDQSTVDTD 1000 (1421)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G------~ilnR~s~D~~~vd~~ 1000 (1421)
...+.+|..++++.......+.++......+.-.-+-..++++-+..- .||--...| ..=+|+..|+...-..
T Consensus 86 ~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 86 WQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhh
Confidence 345678888888888888888888888888888888888888888766 444433333 2236888888776665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHhHh
Q 000560 1001 IPYRLAGLAFALIQLLSIIILMSQAA--------------WQVFPL-FLVIL----GISIWYQAYYITTARELARMVGTR 1061 (1421)
Q Consensus 1001 l~~~l~~~~~~~~~~l~~~~v~~~~~--------------~~~~~v-~ip~~----~~~~~~~~~y~~~sr~l~rl~~~~ 1061 (1421)
.-.....++.+++++++..+++.-.+ +.+++. ++..+ .+.+++.+...+-.-+-.+.+..-
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 55555566666666655555544111 111111 11111 122234444444444445555544
Q ss_pred hccHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q 000560 1062 KAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAI 1140 (1421)
Q Consensus 1062 ~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~~~~~~~~ 1140 (1421)
|. .+.-.-+....|-.|+.|+...++..+..+.-.+.+......+.++...-...+-+.+.+. .+.+-.+..|.+
T Consensus 245 R~----~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i 320 (604)
T COG4178 245 RY----SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQI 320 (604)
T ss_pred HH----HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcC
Confidence 43 3344456777888888887766666665555444444444444333333332222222111 111222345677
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC------CCCCccccCCCCCC-CCCCCCCcEEEEee
Q 000560 1141 DPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI------PSEAPLVIKNSRPS-PEWPSSGKIELENL 1213 (1421)
Q Consensus 1141 ~~~~~gl~l~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~------~~E~~~~~~~~~~~-~~wp~~g~I~~~nv 1213 (1421)
+-|-...+.+-..++...+.|++..+..+.+-.....|+.++.+. +.+.+.... .+.. .+-. +..|+++|+
T Consensus 321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~nl 398 (604)
T COG4178 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNA-DHGITLENL 398 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccc-cceeEEeee
Confidence 777777777777778888999999999999999999999998731 222111100 0000 0101 467999999
Q ss_pred eeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCc
Q 000560 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1421)
Q Consensus 1214 s~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1293 (1421)
++.-+++. ..+++++++++|||.+-|.|+||||||||+++|.|+.+-.+|+|.+-. -+++-++||.|+
T Consensus 399 ~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY 466 (604)
T COG4178 399 SLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPY 466 (604)
T ss_pred eEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCC
Confidence 99987665 689999999999999999999999999999999999999999987641 135899999999
Q ss_pred cccccHhhhcC-CCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000560 1294 LFQGTVRTNLD-PLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1421)
Q Consensus 1294 LF~gTIR~NLd-p~~--~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1370 (1421)
+-.||+||-|. |.. +++|+|+.++|.+|+|.+++.++.+- +. =..-||+|||||+++||.||+||++++|||
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 99999999996 443 38999999999999999999987432 22 234599999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeC
Q 000560 1371 ATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1421)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1417 (1421)
|||+||.+++..+.+.++++.+++|||.|+||.....-.++.+-+++
T Consensus 542 ATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 542 ATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred chhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999999999666555666666543
No 130
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.1e-39 Score=365.81 Aligned_cols=203 Identities=32% Similarity=0.487 Sum_probs=177.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC-----CCCccEEEEcCeeCCCCC--hHH
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV-----EPSGGRILIDGVDISMIG--LQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~-----~p~~G~I~IDG~dI~~i~--l~~ 1280 (1421)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 5999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhcccEEEccCCccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 23467788888888765443221 35799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|+|||||++||+++...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999987656899999999998865 9999999999974
No 131
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.1e-40 Score=383.47 Aligned_cols=203 Identities=28% Similarity=0.446 Sum_probs=177.6
Q ss_pred EEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---Hh
Q 000560 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1282 (1421)
|+++|++++|+.+ ...+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEccCCcccc-ccHhhhcCC-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1283 SRLSIIPQDPMLFQ-GTVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp-~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
++|++|||++.+|. .|+++|+.. . ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 699999963 1 1222 245678889898876544332 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+.+|+||+||||||+||+.|...+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+|+
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999998653 7899999999999966 9999999999984
No 132
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-40 Score=334.99 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=182.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---Hhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1284 (1421)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+||||||||+++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 77999999999999999999999999999999999999999999999999999998665 8999
Q ss_pred cEEEccCCccccc-cHhhhcCC-CC--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDP-LE--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp-~~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
||+|.||.-|... |+.||+.. .. ..+ .+++.++|+.+||.+-...+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999987755 99999863 21 222 3457889999999999988884 5899999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhcc-CEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDN-DLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~-DrIlvL~~G~Iv 1421 (1421)
||+..+|++|+-||||.+||+++...|++.+.+.. .|.||++.||+.+.+.++ -|++.+++|+++
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 99999999999999999999999999999998754 588999999999999774 689999999985
No 133
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-40 Score=349.63 Aligned_cols=204 Identities=28% Similarity=0.448 Sum_probs=172.8
Q ss_pred cEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC-hHHHhc
Q 000560 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~ 1283 (1421)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997543 14999999999999999999999999999999999999999999999997766543 345788
Q ss_pred ccEEEccCCcc-c--cccHhhhcC-CCC----CCCHHHHHHHHHHcCcHHHH-HhcccccCccccCCCCCCChhHHHHHH
Q 000560 1284 RLSIIPQDPML-F--QGTVRTNLD-PLE----QHSDQEIWEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1284 ~i~iIpQdp~L-F--~gTIR~NLd-p~~----~~sdeeI~~aL~~~~L~~~i-~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
.+.+|+|||.- + .-||++-|. |.. .-..++++++|+.+||.+-. .+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999952 2 226666653 332 22456699999999997644 3333 359999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCc--EEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC--TVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~--TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||.-+|++||||||||+||.-..+.|.+.+.+..+++ |.|+|||++..+.. ||||+||++|+++
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 9999999999999999999999999999999998876554 99999999999976 9999999999985
No 134
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-39 Score=362.10 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=174.1
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH----H
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----L 1281 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~----L 1281 (1421)
|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEccCCccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1282 RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999987 999998642 111 13456777777777554332 2347999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCee
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~I 1420 (1421)
+|||||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998654 7899999999999888999999999985
No 135
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=378.88 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=174.3
Q ss_pred CCcEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC-----
Q 000560 1205 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----- 1276 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----- 1276 (1421)
...|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34599999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred -----------ChHHHhcccEEEccCC--ccccccHhhhcCCCC---CCCHHH----HHHHHHHcCcHHHHHhcccccCc
Q 000560 1277 -----------GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLAEIVRQDQRLLDA 1336 (1421)
Q Consensus 1277 -----------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sdee----I~~aL~~~~L~~~i~~lp~gLdt 1336 (1421)
....+|++++|+||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 689999999996431 223333 233444444421 2
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEE
Q 000560 1337 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLV 1414 (1421)
Q Consensus 1337 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlv 1414 (1421)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||||++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 3445567899999999999999999999999999999999999999999998753 5789999999999874 5999999
Q ss_pred EeCCeeC
Q 000560 1415 LDEGKLK 1421 (1421)
Q Consensus 1415 L~~G~Iv 1421 (1421)
|++|+++
T Consensus 249 l~~G~i~ 255 (320)
T PRK13631 249 MDKGKIL 255 (320)
T ss_pred EECCEEE
Confidence 9999974
No 136
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-39 Score=357.29 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=173.3
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+++|++++|+.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 359999999999999999999999999999999999999999999999999864 4577889999
Q ss_pred ccCC--ccccccHhhhcCCCC---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1289 PQDP--MLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1289 pQdp--~LF~gTIR~NLdp~~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
||+| .+|..|+++|+.... ...++++.++++.+++.++..+.| ..||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997432 123457889999999876644333 369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|+|||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 357899999999999875 9999999999986
No 137
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=365.15 Aligned_cols=201 Identities=32% Similarity=0.452 Sum_probs=174.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh---HHHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999987764 567889
Q ss_pred cEEEccCCccccc-cHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++. +..+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-------DLYP----AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHHHHHH
Confidence 9999999999986 999999642 1123 23456677777775543 2233 4699999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 9999999999999999999999999999999998643 7899999999999875 9999999999974
No 138
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=358.80 Aligned_cols=203 Identities=32% Similarity=0.479 Sum_probs=183.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC-CCChHHHhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~-~i~l~~LR~~i 1285 (1421)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 67999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEccCC--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
|+|.|+| .+|..||.+.+.+.. ..+. +.+.++|+.+++.++....| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999998542 2344 34778899999987743333 47999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
.+|..+|++||||||||+||+...+.+.+.+++..+ +.|+|+|+|+++.+.. |||++||++|+++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~ 218 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe
Confidence 999999999999999999999999999999998754 4799999999999988 9999999999973
No 139
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=335.85 Aligned_cols=468 Identities=21% Similarity=0.253 Sum_probs=340.3
Q ss_pred chhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHhhchhhHhhhhhHHHHHH
Q 000560 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1421)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~sffd~tp~G~ilnR~s~D~~~vd~~l~~~l~~ 1007 (1421)
.++-.|+++.....+...+........|...-.+++.++.++++.+|+.-+++-..++++.++++|+..|. .-...+..
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHH
Confidence 44555555555555556666777788999999999999999999999999999999999999999999998 33344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHhhHHHHHHhccHHH
Q 000560 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1421)
Q Consensus 1008 ~~~~~~~~l~~~~v~~~~~~~~~~v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~ 1087 (1421)
+.++.+-.+++.+.+++.+|+++.+.+..+++.++.+.+.++..-+-.+...+....+.++++..+.|.+..+..+...+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 78888889999999999999998888777777666555544444444444555667789999999999999988765444
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HHHHH
Q 000560 1088 FLLRSHSLID------DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL---NLNVL 1158 (1421)
Q Consensus 1088 f~~~~~~~~d------~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~l---~l~~~ 1158 (1421)
........-+ ...+..........|-++.+-.+..+++... +..+- ++.. .+.++.+ -+-..
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la------l~~~w--~st~-~a~tivlvlLflr~p 278 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA------LSLGW--ASTN-VAATIVLVLLFLRTP 278 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhcc--chhh-HHHHHHHHHHHHhhH
Confidence 3332221111 1111111222344455443332222221111 11110 0111 2222332 23445
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcCCCCCccccCCCCCCCCCCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEE
Q 000560 1159 QAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKI 1238 (1421)
Q Consensus 1159 ~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Gekv 1238 (1421)
+..++..+..+-...++..+|.++...|..+. .....+.|+| ..||++||.|.|.++. .-+..||++|+.||.|
T Consensus 279 L~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelv 352 (546)
T COG4615 279 LLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELV 352 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEE
Confidence 55666667777778889999998876332221 1222333445 4799999999998764 4578899999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccccccHhhhcCCCCCCCHHHHHHHH
Q 000560 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1318 (1421)
Q Consensus 1239 gIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL 1318 (1421)
-|+|.|||||||++++|.|++.|++|+|++||.+++.-.+++.|+-++-|.-|-+||+.++ -|-+..+.+.|..-|
T Consensus 353 FliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~L 428 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWL 428 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 333446788787777
Q ss_pred HHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHH--cCCcEE
Q 000560 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE--TSRCTV 1396 (1421)
Q Consensus 1319 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~--~~~~TV 1396 (1421)
++..+....+- .+|=-++ ..||-|||.|+++--|++.+.+|+++||=-|--||.=.+..-+.+--. ..|+||
T Consensus 429 qrLel~~ktsl-~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 429 QRLELAHKTSL-NDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHhhhhcc-cCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 77666544322 1221111 258999999999999999999999999999999999998876655332 258999
Q ss_pred EEEecChhhhhccCEEEEEeCCeeC
Q 000560 1397 ITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1397 I~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+.|+|+-+-...+||++.|++|+++
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCcee
Confidence 9999999999999999999999975
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.2e-39 Score=358.21 Aligned_cols=203 Identities=27% Similarity=0.408 Sum_probs=174.3
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH---h
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---R 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L---R 1282 (1421)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 359999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -cccEEEccCCcccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1283 -SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1283 -~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
++++|+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 68999999999985 5999999641 1222 2346677777777544322 2346999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+||||++++|+||+|||||++||..+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999985
No 141
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.1e-39 Score=356.38 Aligned_cols=211 Identities=22% Similarity=0.348 Sum_probs=187.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh----HHHhc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRS 1283 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~ 1283 (1421)
+.+.|+.++|+++ .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999765 459999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ccEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
.++|+||+|.+|+.|+++|+.....+++++..++++.+++.+.+..+|.|+++..+....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999865455677788899999999999889999999888888999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHH--HHHHHc-CCcEEEEEecChhhhhccCEEEEEeCCe
Q 000560 1364 RILVLDEATASIDTATDNVIQQ--TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~--~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1419 (1421)
++|||||||++||..+...+.+ .++... .+.|+|+++|+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888776 444332 3689999999999998899999999984
No 142
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-39 Score=371.31 Aligned_cols=204 Identities=25% Similarity=0.410 Sum_probs=180.4
Q ss_pred cEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
.|+++||+++|+.. .+.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+++||+| .++..||++|+.... ..+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356779999997431 122 345788899999876654433 46999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|||+++.+..||||++|++|+++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~ 219 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVE 219 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999988643 79999999999998889999999999974
No 143
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.3e-39 Score=357.76 Aligned_cols=200 Identities=31% Similarity=0.463 Sum_probs=173.3
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+++|++++|+.+...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975324699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCC--ccccccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1289 PQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1289 pQdp--~LF~gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
||+| .++..|+++|+... ...+ ++++.+.++..++.+...+ ....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 2345667777777654432 2356999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
+++|++|+|||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998864 37899999999999987 99999999996
No 144
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.6e-39 Score=357.41 Aligned_cols=201 Identities=26% Similarity=0.372 Sum_probs=174.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh---HHHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1421)
++++|++++|+.+ +.+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 5789999999643 459999999999999999999999999999999999999999999999999987754 347889
Q ss_pred cEEEccCCccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++++||+|.+|.+ |+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999975 999999642 112 2345778888888866543322 36999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
|||+++|++++|||||++||+.+...+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 57999999999999976 899999999985
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=361.36 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=176.2
Q ss_pred cEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---H
Q 000560 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1281 (1421)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccCCccccc-cHhhhcCC---CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1282 R-SRLSIIPQDPMLFQG-TVRTNLDP---LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
| ++++|+||+|.+|.+ |+++|+.. ..... ++++.++++..++.+...+ ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999999876 99999864 11222 2456777888777554322 235699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
++||||++++|+||+|||||++||+++...+.+.|++.. +++|||+|+|+++.+..+|++++|++|+|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~ 224 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEE
Confidence 999999999999999999999999999999999999863 478999999999999999999999999974
No 146
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=357.77 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=171.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998654 35778999
Q ss_pred EccCCcccc-ccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|. .|+++|+.... ..+ ++++.++++.+++.+.....| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999998886 59999996321 112 345677888888766543332 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+++...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999864 37899999999998865 9999999999974
No 147
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=364.01 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=181.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCeeCCCCChHHHhc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~ 1283 (1421)
.|+++|++++|+. +++|+|+||++++||++||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999964 359999999999999999999999999999999999985 69999999999999888888899
Q ss_pred ccEEEccCCccccccHhhhcCCCC---C------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1284 RLSIIPQDPMLFQGTVRTNLDPLE---Q------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~gTIR~NLdp~~---~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ....+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996431 1 1234577888888886655432 23345689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 99999999999999999999999999999999998777899999999999886 49999999999974
No 148
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.7e-39 Score=357.38 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=175.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1284 (1421)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4599999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEEccCCcccc-ccHhhhcCCC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++|+||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999998642 1 112456788899988876544332 36999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
|||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999976 89999999996
No 149
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=340.81 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=180.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC---hHHHhc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~ 1283 (1421)
.|+++||+.+|+. ...+|+||||+|++||.|+|+|+||||||||+++|.|+++|++|+|.++|.++.... ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4899999999974 456999999999999999999999999999999999999999999999999999988 677889
Q ss_pred ccEEEccCCccccc-cHhhhcCC------------CCCCCH---HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1284 RLSIIPQDPMLFQG-TVRTNLDP------------LEQHSD---QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp------------~~~~sd---eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
++|+|.|+|.|-.. |+-+|+.- ++-++. .+..++|+++++.+..-.. -++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999988755 89999731 233443 3477899999998876543 246999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+||++|||||.++|+|++-|||||+||+.+.+.|++.|++.. .|.|||+.-|.++.... ||||+-|++|+|+
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999754 57899999999999865 9999999999985
No 150
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.6e-39 Score=345.49 Aligned_cols=175 Identities=36% Similarity=0.566 Sum_probs=163.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 35799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||||++||..+...+.+.|++..+++|+|+++|+++.+..||++++|++|+++
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~ 175 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999887789999999999999889999999999974
No 151
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-39 Score=342.33 Aligned_cols=210 Identities=27% Similarity=0.381 Sum_probs=175.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++..|.. ...++| ||+|++||+++++||+||||||+|++|.++++|++|++ .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999863 367888 99999999999999999999999999999999999997 7776
Q ss_pred ---EEEEEcCCCcCC-CCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ---KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ---~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
+||||-|+.-+| +.||.|||.+-.. ++++ +.++.++..+|+.. ....+.+.+|||||+||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQR 143 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQR 143 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhH
Confidence 479999998775 7899999997643 3443 34444555555431 12236789999999999
Q ss_pred HHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccch-hccCEEEEEeCCEEEEecCchhh
Q 000560 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 729 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l 806 (1421)
|.+||||+.+|+|+|+||||+||||-++.++-++...-.. -+||+|+||||+++. ..+|||.+|++|+|++.++++++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999998888666543322 389999999999985 56999999999999999999999
Q ss_pred hhhhhhHHHHHH
Q 000560 807 IADQNSELVRQM 818 (1421)
Q Consensus 807 ~~~~~~~~~~~~ 818 (1421)
+.++..+|.+.+
T Consensus 224 l~~Pan~FV~~f 235 (309)
T COG1125 224 LANPANDFVEDF 235 (309)
T ss_pred HhCccHHHHHHH
Confidence 987777776654
No 152
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=368.64 Aligned_cols=203 Identities=27% Similarity=0.408 Sum_probs=179.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 688899999997421 122 346778889999876654433 369999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+. -||||++|++|+++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998764 4789999999999985 49999999999974
No 153
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-39 Score=347.29 Aligned_cols=194 Identities=25% Similarity=0.357 Sum_probs=172.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999976 4699999999999999999999999999999999999999999999999988443 45799
Q ss_pred EEccCCccccc-cHhhhcCCCCC-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLEQ-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
||+|++.||.- ||++|+...-+ ...+.+.+.|+++||.++-...|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999998 99999864211 134468889999999998877764 599999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhh-hccCEEEEEeCC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEG 1418 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti-~~~DrIlvL~~G 1418 (1421)
|+.+|+||+||||.++||..|...+|+-+.+.. .++||++|||+++.. .-+|||+||.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999888754 458999999999975 459999999994
No 154
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-38 Score=342.08 Aligned_cols=172 Identities=35% Similarity=0.611 Sum_probs=162.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEEEEEeCCee
Q 000560 1368 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~I 1420 (1421)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 47899999999999988999999999985
No 155
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.1e-39 Score=357.48 Aligned_cols=202 Identities=24% Similarity=0.358 Sum_probs=175.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++||+++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999965324699999999999999999999999999999999999999999999999998764 3667889999
Q ss_pred EccCCccc-cccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLF-QGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHHH
Confidence 99999998 579999986321 122 24567788888876543 3333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999987777999999999999865 9999999999974
No 156
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.7e-39 Score=356.23 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=175.4
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 356788999
Q ss_pred EEEccCCccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998531 112 23456778888888665433 23569999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++++|++|+|||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+++
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 9999999999999999999999999999998864 47899999999998865 9999999999974
No 157
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-38 Score=362.20 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=194.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.|+++|++++|+.. ..+.|+| ||+|++||+++|+|+||||||||+++|.|+++ .+|++ .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48899999999743 2468999 99999999999999999999999999999998 78987 6766
Q ss_pred ----EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|+||+|+++++|++||+....++..++..+.++.++|...+..+|++.++.+++.|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999964444566778888999999988999999999999999999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhhhhhHHH
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 815 (1421)
+.+|+|+||||||++||+++.+.+.+ .+....+++|+|+|||+++++..||+|++|++|++++.|+++++++ ....+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 99999999999999999998776665 4554456899999999999988899999999999999999999988 445555
Q ss_pred HHHH
Q 000560 816 RQMK 819 (1421)
Q Consensus 816 ~~~~ 819 (1421)
.++.
T Consensus 232 ~~~~ 235 (275)
T cd03289 232 QAIS 235 (275)
T ss_pred HHHh
Confidence 5554
No 158
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=359.06 Aligned_cols=202 Identities=33% Similarity=0.512 Sum_probs=177.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccccccHhhhcCCCC---CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000560 1287 IIPQDPMLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1421)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~---~~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1421)
|+||+|.+|+.|+++|+.... ...++++.+.++..++. +... .....||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997432 22345677778887774 2221 23457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1363 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1363 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||||++||..+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999998864 37899999999999875 9999999999974
No 159
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=366.72 Aligned_cols=204 Identities=25% Similarity=0.406 Sum_probs=181.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
|+||+| .+++.|+++||.... ..+ ++++.++++.++|.+++...| ..||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 566789999997421 123 244777888888877665544 369999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||+.+|+||+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|+++
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999998653 78999999999999889999999999974
No 160
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=345.04 Aligned_cols=188 Identities=32% Similarity=0.437 Sum_probs=158.9
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------E
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------~ 660 (1421)
.+++++++.++.. ..+|+| ||+|++||+++|+||+||||||||++|.|+.+|++|+| .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4788888888864 478999 99999999999999999999999999999999999997 7766 5
Q ss_pred EEEEcCCCcCC-CCcHHHHhccCCCCC-------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHH
Q 000560 661 KAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1421)
Q Consensus 661 iayv~Q~~~i~-~~Ti~enI~fg~~~~-------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1421)
++||+|++-++ -.||+|||.||.+.. +++.++.++..+|...- +..+.+|||||||||+||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHH
Confidence 79999998775 469999999997652 23445555555554322 256789999999999999
Q ss_pred HHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeC--CEE
Q 000560 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKD--GKI 797 (1421)
Q Consensus 733 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~--G~i 797 (1421)
||+..+|+++||||||+|||+.|+.++-+.+.+-+. .++||++||||+++.-. +|||++|.+ |+|
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999988887766555 37999999999998655 999999998 444
No 161
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=368.36 Aligned_cols=203 Identities=33% Similarity=0.492 Sum_probs=175.0
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC--hHHHh
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR 1282 (1421)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996532 36999999999999999999999999999999999999999999999999998743 45788
Q ss_pred cccEEEccCC--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHH
Q 000560 1283 SRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1283 ~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
++++|+||+| .+|+.|+++|+.... ..++ +++.++++.++|. +. .|. ....|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~~----~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-------KDK----SPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-------ccC----CcccCCHHHHH
Confidence 9999999998 578899999996421 2333 3466778888774 22 222 33579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. -||||++|++|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999998653 789999999999985 59999999999974
No 162
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=353.29 Aligned_cols=199 Identities=31% Similarity=0.453 Sum_probs=175.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. .++++|+||++++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 25999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EccCCccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.. |+.+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1112 34577888888887553 3333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. |||+++|++|+++
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999987777999999999999865 9999999999974
No 163
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-38 Score=360.09 Aligned_cols=202 Identities=28% Similarity=0.446 Sum_probs=174.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC---hHHHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~~ 1284 (1421)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999998876 4568889
Q ss_pred cEEEccCCcccc-ccHhhhcCCC------------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1285 LSIIPQDPMLFQ-GTVRTNLDPL------------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~------------~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
++++||++.+|. .|+++|+... + ...++++.++++..++.+.. + ..+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-------Y----QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-------C----CCcccCCHH
Confidence 999999998887 6999999631 0 11234566777777775432 2 234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+. -||+|++|++|+++
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999864 3789999999999997 59999999999974
No 164
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-38 Score=351.37 Aligned_cols=199 Identities=24% Similarity=0.381 Sum_probs=175.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 3699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCccc-cccHhhhcCCC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1288 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+||++.+| ..|+++|+... ...+++++.++++..++.+...+. ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 56999999642 123567788899999987665432 2469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999998754 47899999999999865 9999999999974
No 165
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-38 Score=337.20 Aligned_cols=204 Identities=31% Similarity=0.502 Sum_probs=178.1
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HH
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DL 1281 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~L 1281 (1421)
...|++++|+++|.. ..|++||||+|++||..||+|+||||||||++++.|+..|++|+|.|+|.||.+++-+ .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 346999999999965 3699999999999999999999999999999999999999999999999999999854 56
Q ss_pred hcccEEEccCCccccc-cHhhhcC-CCCC---CCHHHHHH----HHHHcCcHHHHH-hcccccCccccCCCCCCChhHHH
Q 000560 1282 RSRLSIIPQDPMLFQG-TVRTNLD-PLEQ---HSDQEIWE----VINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLd-p~~~---~sdeeI~~----aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
|+++|++.|.--||+. ||+||+. |..+ .+++++.+ -|+.+||...+. ..| +.||||.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 9999999999999977 9999997 4444 45555543 467788776532 223 459999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||+.-+|+||++|||||+||+-+...+-+.|++.. -+.|+|+|||+++++.. ||||+++.+|+|+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 9999999999999999999999999999999999888754 37899999999999976 8999999999984
No 166
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=376.41 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=175.4
Q ss_pred EEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---Hh
Q 000560 1208 IELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1282 (1421)
|+++|++++|+. +...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEccCCcccc-ccHhhhcCCC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
++++|+||+|.+|. .|+++|+... ...++ +++.+.++..++.+.... . ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~----~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-------Y----PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-------C----hhhCCHHHHHHHH
Confidence 89999999999886 6999999632 12222 356677777777654332 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+++
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999998643 7899999999999876 9999999999974
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.2e-38 Score=358.98 Aligned_cols=202 Identities=29% Similarity=0.429 Sum_probs=173.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh---HHHhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1284 (1421)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999622 459999999999999999999999999999999999999999999999999987654 447889
Q ss_pred cEEEccCCcccc-ccHhhhcCCCC------------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1285 LSIIPQDPMLFQ-GTVRTNLDPLE------------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~~------------~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
++|+||++.+|. .|+++|+.... . ..++++.++++.+++.+... ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 59999996311 0 12345677788777765432 234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||++|||||+++|++|+|||||++||+++...+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|+++
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999864 37899999999999865 9999999999974
No 168
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=360.88 Aligned_cols=208 Identities=28% Similarity=0.421 Sum_probs=179.5
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CC
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1277 (1421)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHHhcccEEEccCCccccccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. .......+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999742 1122 3457788888887543322 2234456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+++|+||||||||++||..+...+.+.|++..++.|||++||+++.+.. ||+|++|++|+++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999987677899999999999865 9999999999974
No 169
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5e-38 Score=351.02 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=174.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---Hhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1284 (1421)
|+++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEEccCCccc-cccHhhhcCCC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLF-QGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF-~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++|+||+|.+| ..|+++|+... ...+++ ++.++++..++.+...+. ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 67999999742 122322 456777887776544322 246999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999863 46899999999999976 8999999999975
No 170
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=347.77 Aligned_cols=214 Identities=26% Similarity=0.343 Sum_probs=175.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|++++++..|... .......++| ||+|++||+.+|+|.+|+|||||+++|.++-.|++|++ .++|
T Consensus 2 I~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 7889999888753 0123467899 99999999999999999999999999999999999998 7777
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCCC----CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~~----~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
+||+++|++-+.+ .||.+||.|..+. .++..++|.+.+.+.. +++ .-+.++.+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVg----L~d----k~~~yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG----LSD----KADRYPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcC----Chh----hhccCchhcCcchhhH
Confidence 4799999998876 7999999997653 2445555555443321 111 2346789999999999
Q ss_pred HHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhh
Q 000560 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 729 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1421)
|+|||||..+|+|+|.|||||||||++.+.|.+.+..-- .-|-|+++|||.++.++. ||||.||++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999987543221 248999999999999987 999999999999999999999
Q ss_pred hhhhhhHHHH
Q 000560 807 IADQNSELVR 816 (1421)
Q Consensus 807 ~~~~~~~~~~ 816 (1421)
..++..+..+
T Consensus 230 F~~Pk~~~t~ 239 (339)
T COG1135 230 FANPKHAITQ 239 (339)
T ss_pred hcCcchHHHH
Confidence 8766555444
No 171
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=360.09 Aligned_cols=206 Identities=27% Similarity=0.418 Sum_probs=177.6
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 689999999999875 3455
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC----CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||++.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999632 11 124567788888888654432 123345679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|+|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999974
No 172
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=360.30 Aligned_cols=206 Identities=24% Similarity=0.366 Sum_probs=178.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999863 3455
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC----CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE----QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~----~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+ ++.+|+. ..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHHH
Confidence 6889999999999999999999996421 11 234577788888875443 2344554 4579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998777999999999999865 9999999999974
No 173
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-38 Score=357.23 Aligned_cols=201 Identities=26% Similarity=0.423 Sum_probs=171.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1421)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999988876664 67899
Q ss_pred EEccCCccccc-cHhhhcCCCC----CC-------------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLE----QH-------------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
|+||+|.+|.+ |+++|+.... .. ..+++.++++..++.+ ........||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCHH
Confidence 99999999987 9999986321 10 1123445555555432 223344579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||++|||||+++|++|+|||||++||..+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|+++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999998864 67899999999999866 9999999999974
No 174
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=353.36 Aligned_cols=198 Identities=26% Similarity=0.332 Sum_probs=171.3
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 369999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEccCCcccc-ccHhhhcCCCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~---~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+|+||+|.+|. .|+++|+.... .. .++++.+++++.++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 69999986321 11 2356778888888876554333 469999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEe--CCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~--~G~Iv 1421 (1421)
||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+++
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 9999999999999999999999999999998863 37899999999998765 99999999 79974
No 175
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.9e-38 Score=348.81 Aligned_cols=199 Identities=30% Similarity=0.427 Sum_probs=168.7
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+|+|+. .+.++| ||++++||+++|+|||||||||||++|+|.++|.+|+| .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 4789999999974 489999 99999999999999999999999999999999999997 8887
Q ss_pred ----EEEEEcCCCcC-CCCcHHHHhccCCCC--------CHH---HHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 ----KKAYVPQSSWI-QTGTIRENILFGKDM--------RQS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 ----~iayv~Q~~~i-~~~Ti~enI~fg~~~--------~~~---~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.+||+||++.. +..||+|-+.+|+.. .++ ..+++++.+++.+ + ..+...+|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~----l-------a~r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH----L-------ADRPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH----H-------hcCcccccCh
Confidence 58999999765 466999999999642 122 2333455554432 2 2245678999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccch-hccCEEEEEeCCEEEEec
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g 801 (1421)
||||||.|||||+++|+++|||||||+||...+-++++.+.+.. .+|+|+|+|+||++.. .+||++++|++|++..+|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999987654433 3589999999999985 569999999999999999
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
+++|.+.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9999886
No 176
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.7e-38 Score=351.02 Aligned_cols=200 Identities=29% Similarity=0.463 Sum_probs=172.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC--CChHHHhccc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1285 (1421)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 3456788999
Q ss_pred EEEccCCcccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999886 5999999642 1222 23456677777775543332 246999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
||++++|++|||||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999965 999999999985
No 177
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-38 Score=344.63 Aligned_cols=198 Identities=33% Similarity=0.513 Sum_probs=165.4
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..|+++|.+|+|+.+ +.|+| ||++++|++++|+||||||||||+|+|+|.++|.+|++ .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 358999999999742 69999 99999999999999999999999999999999999997 6543
Q ss_pred --EEEEEcCC---CcCCCCcHHHHhccCCCCC-----------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 --KKAYVPQS---SWIQTGTIRENILFGKDMR-----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 --~iayv~Q~---~~i~~~Ti~enI~fg~~~~-----------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
+||||||. .|-|..||+|-+..|.... .+..+++++..++. |+ .+.+..+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~----------~~r~i~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DL----------RDRQIGELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hh----------hCCcccccCc
Confidence 59999996 4667889999999985432 24455555555543 22 2256678999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEec
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1421)
||+|||-|||||.++||+++|||||+|+|+.++..+++ ++..+. +|+||++||||++.+. ++|+|+.|+ +++...|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 99999999999999999999999999999999888876 455443 5999999999999865 599999995 5778889
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
++++..+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9999876
No 178
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-38 Score=361.15 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=177.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644456999999999999999999999999999999999999999999999999998888788999999
Q ss_pred EEccCC--ccccccHhhhcCCC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp--~LF~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
|+||+| .++..|+++|+... ...+++ .+.+++++.++.++.... ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999642 123333 355677777776654433 3579999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|+++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999998643 48999999999998889999999999973
No 179
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-38 Score=355.81 Aligned_cols=203 Identities=29% Similarity=0.450 Sum_probs=175.3
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HHh
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1282 (1421)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEccCCcccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
++++|+||+|.+|. .|+++|+... ... .++++.++++..++.+..... ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 5999998631 112 234577788888876554332 2469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||++++|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+.. ||++++|++|+++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999864 37899999999999865 9999999999974
No 180
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5e-38 Score=352.55 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=177.1
Q ss_pred cEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH---H
Q 000560 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1281 (1421)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcccEEEccCCccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1282 -RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 -R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
+++++++||+|.+|.+ |+++|+... ... ..+++.++++.+++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999875 999998631 111 2346778888888876654433 3699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998763 278999999999999889999999999974
No 181
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-38 Score=355.68 Aligned_cols=199 Identities=25% Similarity=0.409 Sum_probs=171.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EccCCcccc-ccHhhhcCCCCC---C----C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLEQ---H----S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~~---~----s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
+||+|.+|. .|+++|+..... . . ++++.++++..++.+..... ..+||+|||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999986 599999974211 1 1 23456777777776544332 24699999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999988643 7899999999998765 9999999999974
No 182
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.6e-38 Score=351.10 Aligned_cols=199 Identities=22% Similarity=0.407 Sum_probs=171.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EccCCcccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999885 5999999642 1122 234667788888766543332 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999998864 37899999999999876 9999999999974
No 183
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.5e-38 Score=351.24 Aligned_cols=194 Identities=29% Similarity=0.452 Sum_probs=168.3
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998774 578899999
Q ss_pred ccCCcc---ccccHhhhcCCCCC-----------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1289 PQDPML---FQGTVRTNLDPLEQ-----------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1289 pQdp~L---F~gTIR~NLdp~~~-----------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
||+|.+ |+.|+++|+..... ..++++.++++..++.+.... ++ .+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-------QI----GELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-------Cc----ccCCHHHHHHHH
Confidence 999976 66899999863211 123467888888888765433 22 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
|||||+++|++|+|||||++||+++...+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|.+
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999999999999999999999864 57899999999999876 899999999854
No 184
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-37 Score=356.31 Aligned_cols=200 Identities=26% Similarity=0.365 Sum_probs=181.2
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcc
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1284 (1421)
.+.|+++|++++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4569999999852 3599999999999999999999999999999999999999999999998 4
Q ss_pred cEEEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1285 i~iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
++|+||++.+|++|+++|+.......+.++.++++.+++.+.+..+|.+.++.+++.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998644445556778888899999999999999999998899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1365 ILVLDEATASIDTATDNVIQQT-IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~-I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||||++||+++...+.+. +++..+++|||+|+|+++.+..||+|++|++|+++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 9999999999999999988765 45555689999999999999889999999999974
No 185
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.8e-38 Score=357.78 Aligned_cols=205 Identities=30% Similarity=0.465 Sum_probs=176.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCeeCCCC--ChHH
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~~ 1280 (1421)
++++|++++|+.. .+++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999643 5999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred HhcccEEEccCCccccccHhhhcCCC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
.|++++|+||++.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .++. ...+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLHD----SALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---HhhC----CcccCCHHHHHH
Confidence 78899999999999999999999631 11 12 3456778888888644321 1233 345799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++++|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|+++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987667899999999998865 9999999999974
No 186
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-38 Score=364.55 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=172.4
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC----ChHH
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1280 (1421)
|+++||+++|++.. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhcccEEEccCC--ccccccHhhhcCCCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
+|++++|+||+| .+|..|+++|+.... ..+.+ ++.++++.+++.. ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 899999999998 588899999996421 22332 3445555555431 1122345679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|+++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999864 4799999999999985 58999999999974
No 187
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-38 Score=352.99 Aligned_cols=202 Identities=25% Similarity=0.428 Sum_probs=169.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1421)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEccCCccccc-cHhhhcCCCCC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLEQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1421)
|+||+|.+|.+ |+++|+..... +. .+++.++++..+ .+++.+++ ...+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~~----~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRKQ----LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhhC----chhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964321 11 112223333321 12222333 34569999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1361 KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|++|+|||||++||.++...+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|+++
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 9999999999999999999999999998864 57899999999998865 9999999999974
No 188
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-38 Score=347.68 Aligned_cols=197 Identities=29% Similarity=0.426 Sum_probs=172.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987653 4678999
Q ss_pred EccCCccccc-cHhhhcCCCCC-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLEQ-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+..... .+++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 99999974211 23456888999999876654443 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+++
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 99999999999999999999999999999864 37899999999999866 9999999999974
No 189
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=360.34 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=180.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++||+.+|.+.. +++|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|+.++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997643 999999999999999999999999999999999999999999999999999998886 7899
Q ss_pred EEccCCccccc-cHhhhcCCC-C------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
+|+|+..||+. ||++|+.+. . +.-++++.++++..++.+...+.|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999987 999999742 2 1236678899999999998888774 589999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|.++|++++||||.|+||......+...|++..+ +.|+|.|||+....+. +|||.||++|+|.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~ 213 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee
Confidence 9999999999999999999999999888887543 5799999999888765 9999999999974
No 190
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=357.45 Aligned_cols=204 Identities=25% Similarity=0.381 Sum_probs=174.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++||+++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCcccc-ccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+- ........+||+|||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999986 69999996421 112 3356667777776430 011233457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||..+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|+++
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999864 37999999999998754 9999999999974
No 191
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-38 Score=363.67 Aligned_cols=203 Identities=28% Similarity=0.372 Sum_probs=173.9
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC----CChHH
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1280 (1421)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEccCC--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHH
Q 000560 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
+|++++|++|+| .+|..|+.+|+.... ..+. +++.++++.+++. ++. + ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-------E----KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-------c----CCcccCCHHHH
Confidence 899999999998 789999999996421 1222 3466777777774 222 2 23357999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. -||||++|++|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999998754 4789999999999885 59999999999974
No 192
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-38 Score=370.78 Aligned_cols=201 Identities=22% Similarity=0.350 Sum_probs=176.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999433 3599999999999999999999999999999999999999999999999999987765 47899
Q ss_pred EEccCCccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
||||++.+|.. ||++|+.... ..+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997421 122 345678899999987766554 3699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999987653 7899999999998764 9999999999974
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=358.97 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=179.6
Q ss_pred CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--C
Q 000560 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--I 1276 (1421)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i 1276 (1421)
+.+.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4568999999999964 3599999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHHHhcccEEEccCCccccccHhhhcCCCC---CC--C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH--S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1277 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~--s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
+...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 4567889999999999999999999996321 11 1 3456788888888654421 12234457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999987667899999999999865 8999999999974
No 194
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-38 Score=349.29 Aligned_cols=200 Identities=27% Similarity=0.396 Sum_probs=173.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ++ .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-------LV----KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-------Ch----hhCCHHHHHHHHHHHHH
Confidence 9999998875 999999531 111 23467788888888765433 33 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+.+|++|+|||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999988643 6899999999999865 9999999999974
No 195
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=361.88 Aligned_cols=203 Identities=31% Similarity=0.463 Sum_probs=175.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC--CCChHHHhcc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSR 1284 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~ 1284 (1421)
-|+++|++++|+++ +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 45999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred cEEEccCC--ccccccHhhhcCCC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1285 LSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1285 i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.++. |. ...+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-------~~----~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-------DK----PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-------hC----CcccCCHHHHHHHHH
Confidence 99999998 57899999999642 12232 3466777888876543 22 345799999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||||+.+|+||||||||++||+.+...+.+.|++..+ ++|||+++|+++.+. .||||++|++|+++
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999988753 789999999999987 59999999999974
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=354.57 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=173.7
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999964 35999999999999999999999999999999999999999999999998763 568899
Q ss_pred EEEccCCcccc-ccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+|+||+|.+|. .|+++|+... ....++++.++++..++.+.... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 5999999753 22235678888888888654432 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999998753 37899999999998854 9999999999974
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=359.53 Aligned_cols=205 Identities=27% Similarity=0.443 Sum_probs=180.8
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc---cEEEEcCeeCCCCChHHHh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~---G~I~IDG~dI~~i~l~~LR 1282 (1421)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996543459999999999999999999999999999999999999987 8999999999887777889
Q ss_pred cccEEEccCC--ccccccHhhhcCCC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1283 SRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1283 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999742 12333 34778888898877654443 47999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+|||||+++|++|||||||++||..+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|+++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998653 78999999999999889999999999974
No 198
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=355.84 Aligned_cols=206 Identities=29% Similarity=0.433 Sum_probs=178.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCCChHHH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQDL 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i~l~~L 1281 (1421)
.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEccCCccc-cccHhhhcCCCC---C---C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1282 RSRLSIIPQDPMLF-QGTVRTNLDPLE---Q---H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF-~gTIR~NLdp~~---~---~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
|++++|+||+|.+| +.|+++|+.... . . .++++.++++.+++.+.+. ..+|..+ .+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHHH
Confidence 99999999999755 679999996321 1 1 1346788888888865432 2244444 569999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+. -||+|++|++|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 99999999999999999999999999999999999998767899999999999985 59999999999973
No 199
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-38 Score=357.35 Aligned_cols=206 Identities=31% Similarity=0.409 Sum_probs=176.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCC--CCChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS--MIGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~--~i~l~ 1279 (1421)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcccEEEccCCccccc-cHhhhcCCC---CC--CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ--HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~--~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
++|++++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.+.. .++ ....+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLN----DYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhc----cChhhCCHHH
Confidence 788999999999999976 999999631 11 11 2456777888777543321 123 3446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999987667999999999999865 9999999999974
No 200
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-38 Score=368.86 Aligned_cols=201 Identities=25% Similarity=0.417 Sum_probs=176.7
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999964 3589999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEccCCccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
++++|++.+|.. |+++|+... . ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999742 1 122 356778888888876544333 469999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+||||||+||..+...+++.|++..+ ++|+|+|||+.+.+.. ||||+||++|+|+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999988654 7899999999999865 9999999999984
No 201
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.6e-38 Score=352.37 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=171.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+ .+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999964 3599999999999999999999999999999999999999999999999999877654 3458999
Q ss_pred EccCCcc-ccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPML-FQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~L-F~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996431 122 2345556666665432 2333457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+++|+||+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|+++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~ 211 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999865 478999999999999889999999999973
No 202
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7e-38 Score=316.78 Aligned_cols=197 Identities=28% Similarity=0.435 Sum_probs=174.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|.+++|.++|.. .| =..+++|++||+|||+|+||||||||++++.||..|.+|.|.|+|+|...-++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 34 257899999999999999999999999999999999999999999999876654 467999
Q ss_pred EccCCccccc-cHhhhcCCC----CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL----EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~----~~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+.||..||.- ||++|+... -. ...+.+..++.++|+..+..++|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 999998642 22 234568899999999999999985 4899999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+|||+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 99999999999999999999999988887754 57899999999998865 9999999999984
No 203
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=356.12 Aligned_cols=205 Identities=24% Similarity=0.448 Sum_probs=175.7
Q ss_pred CCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--C
Q 000560 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--I 1276 (1421)
Q Consensus 1204 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i 1276 (1421)
....|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999964 359999999999999999999999999999999999987 689999999999863 5
Q ss_pred ChHHHhcccEEEccCCccccccHhhhcCCCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1277 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
+..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .+| ....+||+|||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLN----ESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhC----CCcccCCHHHH
Confidence 6677899999999999999999999997432 11 23556777888877543221 233 33457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||+|++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 9999999999999999999999999999999999999987667899999999998865 999999997
No 204
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=357.72 Aligned_cols=202 Identities=27% Similarity=0.425 Sum_probs=175.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC-hHHHhcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~~i~ 1286 (1421)
++++|++++|+++ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998765 467888999
Q ss_pred EEccCCc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
++||+|. +++.|+++|+.... ..+ ++++.++++..++.+.... . ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-------S----PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-------C----cccCCHHHHHHHHHHH
Confidence 9999985 56789999996431 122 3456677888887655432 2 2469999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
||+++|+||+|||||++||+.+...+.+.|++.. +++|||++||+++.+..||+|++|++|+++
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998754 478999999999999889999999999974
No 205
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=355.44 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=175.9
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC-------
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG------- 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~------- 1277 (1421)
.+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 35999999999999999999999999999999999999999999999999986431
Q ss_pred ------hHHHhcccEEEccCCccccc-cHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000560 1278 ------LQDLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1421)
Q Consensus 1278 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1421)
...+|++++|+||+|.+|.+ |+++|+... .... ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34678899999999999975 999999631 1112 345677777777755431 2234
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
..||+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998864 47999999999999986 999999999997
Q ss_pred C
Q 000560 1421 K 1421 (1421)
Q Consensus 1421 v 1421 (1421)
+
T Consensus 231 ~ 231 (257)
T PRK10619 231 E 231 (257)
T ss_pred E
Confidence 4
No 206
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-38 Score=346.77 Aligned_cols=197 Identities=26% Similarity=0.449 Sum_probs=169.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 359999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EccCCccccc-cHhhhcCCCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||++.+|.+ |+++|+.... .. .++++.++++..++.+... ....+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999986421 11 1345566777777655432 22356999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||++++|++|+++
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999998764 47899999999999865 9999999999974
No 207
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=357.35 Aligned_cols=202 Identities=28% Similarity=0.389 Sum_probs=177.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccccc-cHhhhcCCCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~-----------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+..... + .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-------V----DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-------c----ccCCHHHHHHHH
Confidence 99999877665 9999996321 11245678889999887654333 2 369999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||||+.+|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+. .||+|++|++|+++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999998864 3799999999999986 49999999999974
No 208
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-37 Score=347.78 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=169.5
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh---HHHh
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR 1282 (1421)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 259999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cccEEEccCC--ccc-cccHhhhcCC----CC-CCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1283 SRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1283 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sdeeI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
++++|+||+| .++ ..|+++|+.. .. ...+++. .+.++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 8999999999 344 5699999852 11 1112211 24555555521 122233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+. .||+|++|++|+++
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 999999999999999999999999999999999999998654 789999999999987 59999999999974
No 209
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=356.17 Aligned_cols=207 Identities=26% Similarity=0.420 Sum_probs=178.9
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1278 (1421)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 459999999999999999999999999999999999997 589999999999864 345
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
..+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999642 111 23456778888888655432 23344567999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|++|+|||||++||..+...+.+.|++..++.|||+|+|+++.+.. ||+|++|++|+++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999988778999999999998865 9999999999974
No 210
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-37 Score=352.27 Aligned_cols=201 Identities=24% Similarity=0.369 Sum_probs=174.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1421)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.+++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999988776654 56799
Q ss_pred EEccCCccccc-cHhhhcCCCCC------------C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLEQ------------H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~~------------~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
|+||++.+|.+ |+++|+..... . .++++.++++..++.+.. + ....+||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-------D----RLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-------c----CChhhCCHHHH
Confidence 99999999987 99999974211 0 233456667666664332 2 33457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999987677899999999999975 9999999999974
No 211
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1e-37 Score=350.98 Aligned_cols=201 Identities=26% Similarity=0.473 Sum_probs=170.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1286 (1421)
|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988776654 57899
Q ss_pred EEccCCccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||+|.+|.+ |+++|+... .... ++++.+.++..++.+. ......+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1122 2234455666655432 233345799999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++++|++|+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999998764 47899999999987765 9999999999973
No 212
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9e-37 Score=350.27 Aligned_cols=212 Identities=38% Similarity=0.662 Sum_probs=189.9
Q ss_pred CCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCEEEEE
Q 000560 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV 664 (1421)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv 664 (1421)
+.+..++++|+++.+ .+.+++ ||++++||+++|+|+||||||||+++|+|+++|.+|++ .++|.++|+
T Consensus 35 ~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I-~i~g~i~yv 103 (282)
T cd03291 35 SDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSGRISFS 103 (282)
T ss_pred CCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEEEE
Confidence 345679999999862 258999 99999999999999999999999999999999999997 899999999
Q ss_pred cCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEe
Q 000560 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1421)
Q Consensus 665 ~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1421)
+|++++++.|++||+.++....+.++.+.++++.+.+.+..++.+..+.+++++.+||||||||++||||++.+|+++||
T Consensus 104 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiL 183 (282)
T cd03291 104 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (282)
T ss_pred eCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999988999999999865555566777888888888888888888888899999999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
||||++||+.+...+.+.++..+.+++|+|++||+++++..||++++|++|++++.|+.+++..
T Consensus 184 DEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 184 DSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999888787766555556899999999999988899999999999999999988875
No 213
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-37 Score=328.10 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=172.4
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
...|+++++++++.. ..+++| ||+|++||+++|+||+||||||||++|+|+++|++|+| .+.|
T Consensus 6 ~~~I~vr~v~~~fG~--------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD--------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC--------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 457999999999964 478999 99999999999999999999999999999999999997 6665
Q ss_pred ---------EEEEEcCCCcCCC-CcHHHHhccCC----CCCHHHHHH----HHHHhccchh-HHhhcCCCCccccCCCCc
Q 000560 660 ---------KKAYVPQSSWIQT-GTIRENILFGK----DMRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ---------~iayv~Q~~~i~~-~Ti~enI~fg~----~~~~~~y~~----v~~~c~l~~d-l~~~~~gd~t~ig~~g~~ 720 (1421)
++|+++|+.-+|+ .||+||+.|.. .+.++..++ -+++++|..+ .+ ..+.+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~-----------~~PsE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD-----------LYPSE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh-----------hCchh
Confidence 4799999999886 59999999953 234444433 2466666655 33 34679
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
||||++.|++||||+..||+++++|||||+|||.++ ..|++++..+.+ +-|+++||||++.+.. ||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a-~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA-GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchH-HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 999999999999999999999999999999999865 455677766543 7999999999998765 999999999999
Q ss_pred EEecCchhhhhhhhhHH
Q 000560 798 EQSGKYEDLIADQNSEL 814 (1421)
Q Consensus 798 ~~~g~~~~l~~~~~~~~ 814 (1421)
...|+++|+.+ .+..+
T Consensus 225 ~~~Gt~~el~~-sd~P~ 240 (263)
T COG1127 225 IAEGTPEELLA-SDDPW 240 (263)
T ss_pred EEeCCHHHHHh-CCCHH
Confidence 99999999988 44333
No 214
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=357.69 Aligned_cols=202 Identities=26% Similarity=0.423 Sum_probs=177.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++++
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 349999999999999999999999999999999999999999999999999988777889999999
Q ss_pred EccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1288 IPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1288 IpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999996321 223 235778888888876554433 3699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|+.+|++|||||||++||+.+...+.+.+++..+ ++|||++||+++.+. -||||++|++|+++
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999988653 789999999999985 59999999999974
No 215
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=360.81 Aligned_cols=204 Identities=27% Similarity=0.381 Sum_probs=173.4
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC----CChHH
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1280 (1421)
|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEccCC--ccccccHhhhcCCCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.|++++|+||+| .+|+.|+++|+.... ..+.+ .+.++++.++|.+.+ .+. ....||+||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~----~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LAR----SPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhC----CcccCCHHHHH
Confidence 888999999998 688889999996321 12332 456677777774221 122 33569999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+. .||||++|++|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988643 789999999999986 49999999999974
No 216
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=356.95 Aligned_cols=204 Identities=24% Similarity=0.402 Sum_probs=178.9
Q ss_pred cEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccccccHhhhcCCC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|+||+| .++..|+.+|+... ...+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 47788999999742 123333 356778888887654332 246999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|+++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~ 219 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEII 219 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999987653 78999999999999889999999999974
No 217
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=354.66 Aligned_cols=201 Identities=27% Similarity=0.443 Sum_probs=176.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccCCccccc-cHhhhcCCC--------CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL--------EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~--------~~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
+||++.+|.+ |+++|++.. +. ..++++.++++.+++.+... +. ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-------RR----LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-------CC----cccCCHHHHHHHHH
Confidence 9999998877 999999742 11 12345677888888865433 22 34699999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++++|++|||||||++||+++...+.+.|++.. +++|||++||+++.+.. ||+|++|++|+++
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 999999999999999999999999999999998764 47899999999999865 9999999999973
No 218
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-38 Score=355.37 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=175.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC---CC-----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++.. +..++. ...+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~----~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDR----NAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhcc----ChhhCCHHHHH
Confidence 6788999999999999999999997421 11 123566777777774321 122333 34579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|++|||||||++||+++...+.+.|++..+++|||+|||+++.+.. ||+|++|++|+++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987777899999999999876 9999999999974
No 219
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=357.90 Aligned_cols=204 Identities=25% Similarity=0.405 Sum_probs=178.3
Q ss_pred cEEEEeeeeeeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC-hHHH
Q 000560 1207 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDL 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~-l~~L 1281 (1421)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4568
Q ss_pred hcccEEEccCCc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1282 RSRLSIIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
|++++|+||+|. +|..|+++|+.... ..+ ++++.++++.+++.++..+.| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67679999996421 112 456788899999877655443 4699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+..||+|++|++|+++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~ 223 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999864 378999999999999889999999999974
No 220
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=361.18 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=172.6
Q ss_pred cEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC--------
Q 000560 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-------- 1275 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~-------- 1275 (1421)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996532 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHHhcccEEEccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcH-HHHHh
Q 000560 1276 ----------------IGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLA-EIVRQ 1329 (1421)
Q Consensus 1276 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~-~~i~~ 1329 (1421)
.+...+|++++|+||+| .+|..||++||.... ..+ ++++.++++.++|. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-- 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL-- 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh--
Confidence 13456889999999986 688889999997421 223 23467777777774 332
Q ss_pred cccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-
Q 000560 1330 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI- 1407 (1421)
Q Consensus 1330 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~- 1407 (1421)
+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.
T Consensus 160 -----~----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 160 -----Q----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred -----h----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2 2335799999999999999999999999999999999999999999998763 4789999999999875
Q ss_pred ccCEEEEEeCCeeC
Q 000560 1408 DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1408 ~~DrIlvL~~G~Iv 1421 (1421)
.||||++|++|+++
T Consensus 231 ~adrv~vl~~G~i~ 244 (305)
T PRK13651 231 WTKRTIFFKDGKII 244 (305)
T ss_pred hCCEEEEEECCEEE
Confidence 59999999999974
No 221
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.6e-37 Score=370.57 Aligned_cols=202 Identities=27% Similarity=0.458 Sum_probs=180.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcc-ccccHhhhcCCCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1287 IIPQDPML-FQGTVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1287 iIpQdp~L-F~gTIR~NLdp~~-----------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
++||++.+ |+.|+++|+.... ...++.+.++++.+++.++.. .++ .+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-------~~~----~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-------RPV----TSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHHHHH
Confidence 99999987 6789999996421 112346888999999876543 333 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||||+++|+||+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+. -||||++|++|+++
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999865 4789999999999995 59999999999974
No 222
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=352.09 Aligned_cols=207 Identities=26% Similarity=0.412 Sum_probs=176.7
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1278 (1421)
|.|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3599999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
..+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67899999999999999999999996421 1 1 23456667777776544321 12234457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++|||||+++|++|+|||||++||..+...+.+.|++..+++|||++||+++.+.+ ||+|++|++|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987668899999999998865 9999999999974
No 223
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=356.82 Aligned_cols=204 Identities=24% Similarity=0.407 Sum_probs=176.9
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|++..+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp~--LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
|+||+|. ++..|+++|+.... ... ++++.++++..++.+... . ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-------Y----EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-------C----CcccCCHHHHHHHHHHH
Confidence 9999994 44568999985321 112 345667777777755432 2 23579999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
|++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+..||||++|++|+++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~ 221 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEE
Confidence 99999999999999999999999999999998643 78999999999998889999999999974
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.5e-38 Score=368.65 Aligned_cols=189 Identities=25% Similarity=0.379 Sum_probs=167.9
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH----hcccEEEccCCccccc
Q 000560 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG 1297 (1421)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1297 (1421)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -cHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1298 -TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1298 -TIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
||++|+... ... .++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999632 112 2356778888888876654443 369999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+. -||||++|++|+++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999998764 3799999999999875 49999999999984
No 225
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.8e-37 Score=353.24 Aligned_cols=201 Identities=24% Similarity=0.415 Sum_probs=173.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC----------
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---------- 1277 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~---------- 1277 (1421)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHHhcccEEEccCCcccc-ccHhhhcCCC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1278 ---LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1278 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999998885 7999999641 111 234567778888776554332 3569
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|+++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999865 9999999999974
No 226
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-37 Score=350.38 Aligned_cols=201 Identities=25% Similarity=0.395 Sum_probs=172.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC--hHHHhccc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1285 (1421)
++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999964 35999999999999999999999999999999999999999999999999998643 45678899
Q ss_pred EEEccCCcccc-ccHhhhcCCCC----CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPLE----QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~----~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|+||++.+|. .|+++|+.... ..+ ++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998886 59999996421 112 2345566777766544332 2356999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++++|++|+|||||++||.++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999998764 47899999999999865 9999999999974
No 227
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.4e-37 Score=362.31 Aligned_cols=202 Identities=25% Similarity=0.385 Sum_probs=175.1
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEccCCcccc-ccHhhhcCCCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+|+||+|.+|. .|+++|+..+. ..++ +++.++++.+++.+ ..+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 59999997422 1232 23456666666643 3455553 69999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+.+|++|+|||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||||++|++|+++
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999864 47899999999999966 9999999999974
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-38 Score=358.20 Aligned_cols=200 Identities=25% Similarity=0.395 Sum_probs=172.5
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH----hcc
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSR 1284 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~ 1284 (1421)
.++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 358999999999999999999999999999999999999999999999999988765543 468
Q ss_pred cEEEccCCcccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1285 LSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1285 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++|+||+|.+|. .|+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 6999999631 111 2345778888888877655443 36999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||+++|+||||||||++||..+...+.+.|++.. .++|||+++|+++.+.. ||+|++|++|+++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999998864 37899999999998865 9999999999974
No 229
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=353.39 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=175.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc---CCC--CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---VEP--SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl---~~p--~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999997 444 589999999999764 345
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC---CC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 778899999999999999999999631 11 123456778888887554421 223445679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|+++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999974
No 230
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-38 Score=355.37 Aligned_cols=205 Identities=24% Similarity=0.397 Sum_probs=175.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCCCC--hHH
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMIG--LQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~i~--l~~ 1280 (1421)
-+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 369999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcccEEEccCCccccccHhhhcCCC---CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78999999999999999999998632 11 12345677888888755322 1223345679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|++|+|||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987778999999999999875 9999999999974
No 231
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.2e-37 Score=343.51 Aligned_cols=197 Identities=24% Similarity=0.415 Sum_probs=172.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. +++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 568999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EccCCccccc-cHhhhcCC-CC-C-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDP-LE-Q-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp-~~-~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 99999863 21 1 13456778899999877655444 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++++|||||++||.++...+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|+++
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 99999999999999999999999999999864 37899999999999865 9999999999974
No 232
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=351.29 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=176.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|.. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999964 35999999999999999999999999999999999999997 69999999998753 456
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC---C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|..|+++|+.... . .. ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7899999999999999999999997421 1 11 2345556677777654432 233455679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||++||+++.+.+ ||+|++|++|+++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV 225 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE
Confidence 999999999999999999999999999999999999987667999999999999876 7999999999873
No 233
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=354.51 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=175.9
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 3599999999999999999999999999999999999985 799999999998653 345
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+ +..++++ ..+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~----~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET---SDRLKSP----ALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch---hhhhcCC----hhhCCHHHHHH
Confidence 678899999999999999999999632 1122 23466788888775332 1223443 45699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|+||+|||||++||..+...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987667999999999999865 9999999999974
No 234
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=353.31 Aligned_cols=206 Identities=25% Similarity=0.392 Sum_probs=175.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~--p---~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 359999999999999999999999999999999999953 6 499999999999753 345
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|+.++|+||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 111 23456677888877554322 123344579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+++|+++.+.. ||||++|++|+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987667999999999998865 9999999999974
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-37 Score=330.73 Aligned_cols=171 Identities=44% Similarity=0.745 Sum_probs=162.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+...+.+++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCe
Q 000560 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1419 (1421)
|||||++||..+...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998777799999999999998899999999996
No 236
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-37 Score=367.31 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=175.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+. ..+|+|+||++++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999887664 67899
Q ss_pred EEccCCcccc-ccHhhhcCCC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQ-GTVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~-gTIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||++.+|. .|+++|+... . ..+ ++++.++++..+|.++..+. ..+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 5999999742 1 122 34577788888876654433 34699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||||++|++|+++
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999987653 7899999999998765 9999999999984
No 237
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=350.42 Aligned_cols=201 Identities=25% Similarity=0.355 Sum_probs=171.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC------CCChHHH
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS------MIGLQDL 1281 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~------~i~l~~L 1281 (1421)
++++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcccEEEccCCccccc-cHhhhcCC--C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1282 RSRLSIIPQDPMLFQG-TVRTNLDP--L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp--~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
|++++|+||+|.+|.+ |+++|+.. . .... .+++.+.++..++.++.... ..+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHH
Confidence 8899999999999976 99999962 1 1112 23455667777765544332 34799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++||||++++|++|+|||||++||.++...+.+.|++.. +++|+|+++|+++.+.+ ||++++|++|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999998764 47999999999999865 9999999999974
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-37 Score=346.00 Aligned_cols=203 Identities=24% Similarity=0.319 Sum_probs=176.1
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HHh
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1282 (1421)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEccCCcccc-ccHhhhcCCCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1283 SRLSIIPQDPMLFQ-GTVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
+.++++||+|.+|. .|+.+|+.... ..+. +++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999997421 2222 34667777887766655443 46999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~Iv 1421 (1421)
+||||++++|++|+|||||++||.++...+.+.|++.. .++|+|+|+|+++....||+|++|++|++.
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999998865 379999999999977779999999999873
No 239
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=351.37 Aligned_cols=208 Identities=25% Similarity=0.445 Sum_probs=177.3
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCeeCCCC--C
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--G 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~--p---~~G~I~IDG~dI~~i--~ 1277 (1421)
+|.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999974 359999999999999999999999999999999999986 4 689999999999753 3
Q ss_pred hHHHhcccEEEccCCcccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1278 LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
...+|++++|+||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+... ++ ....+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~----~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR---LK----SNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hh----CCcCcCCHH
Confidence 4568899999999999998 5999999631 1112 24466778888876544321 22 345679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||++||||++++|++|+|||||++||..+...+.+.|++..++.|||++||+++.+.. ||++++|++|+|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999974
No 240
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=341.55 Aligned_cols=205 Identities=32% Similarity=0.422 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE---------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~--------- 660 (1421)
|.+++.+-.|+. .+.++| +++|+.||.+|+.|||||||||||++|+|+..|++|.| .++|+
T Consensus 3 i~i~~~~~~~~~--------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~~ 73 (345)
T COG1118 3 IRINNVKKRFGA--------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNLA 73 (345)
T ss_pred eeehhhhhhccc--------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhccc
Confidence 566666666653 356778 99999999999999999999999999999999999997 67664
Q ss_pred -----EEEEcCCCcCC-CCcHHHHhccCCCCC---------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 661 -----KAYVPQSSWIQ-TGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 661 -----iayv~Q~~~i~-~~Ti~enI~fg~~~~---------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
||||+|+.-+| ..||.|||.||.+.. +.+.++.++.|.|+.-- ..++..|||||
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQ 142 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQ 142 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHH
Confidence 79999997765 789999999997432 34455667777664321 25678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccch-hccCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~D~i~~l~~G~i~~~g~~ 803 (1421)
||||+||||+..+|+++||||||+|||++..+.+-..+.+-..+ |.|+++||||.++. ..||+|++|++|+|.+.|++
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 99999999999999999999999999999987765443332333 89999999999986 55999999999999999999
Q ss_pred hhhhhhhhhHHH
Q 000560 804 EDLIADQNSELV 815 (1421)
Q Consensus 804 ~~l~~~~~~~~~ 815 (1421)
+|+...++..|.
T Consensus 223 ~ev~~~P~s~fV 234 (345)
T COG1118 223 DEVYDHPASRFV 234 (345)
T ss_pred HHHhcCCCccce
Confidence 999876665543
No 241
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3e-37 Score=345.17 Aligned_cols=202 Identities=25% Similarity=0.375 Sum_probs=175.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccccccHhhhcCCC----CC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1287 IIPQDPMLFQGTVRTNLDPL----EQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~----~~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
|+||+|.+|+.|+++|+... .. ..++++.++++..++.+. .......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 123455677777776431 1123345799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhccCEEEEEe--CCee
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLD--EGKL 1420 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~--~G~I 1420 (1421)
+|+++||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|++|+ +|+|
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 999999999999999999999999999864 3789999999999998899999996 5654
No 242
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=354.59 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=179.3
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CC
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IG 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1277 (1421)
.+.|+++|++++|.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3599999999999999999999999999999999999884 89999999999875 34
Q ss_pred hHHHhcccEEEccCCccccccHhhhcCCC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999642 11 11 2447778888887654432 2234456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++||||++++|+||||||||++||..+...+.+.|++..+++|+|++||+++.+.. ||||++|++|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999987778999999999999865 9999999999974
No 243
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=365.08 Aligned_cols=200 Identities=25% Similarity=0.419 Sum_probs=174.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 359999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEccCCccccc-cHhhhcCCC-C------CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~------~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999742 1 122 345677888888866544333 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|+
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999998654 6899999999998765 9999999999974
No 244
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-37 Score=350.13 Aligned_cols=202 Identities=27% Similarity=0.442 Sum_probs=169.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-HhcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~ 1286 (1421)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998877655 467899
Q ss_pred EEccCCccccc-cHhhhcCCC-CC--CCHHH-HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPL-EQ--HSDQE-IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~-~~--~sdee-I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
|+||++.+|.+ |+++|+... .. ..+++ ..++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999632 11 12222 233333332 12222233445799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999998653 7899999999999985 9999999999974
No 245
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=355.00 Aligned_cols=206 Identities=25% Similarity=0.436 Sum_probs=175.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 359999999999999999999999999999999999865 789999999999875 3445
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|.+|+++|+... ... .++.+.++++.+++.+.+.. .......+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998632 111 13446777777776532211 122344679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|+|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||||++|++|+++
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988667899999999998864 9999999999974
No 246
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=352.72 Aligned_cols=206 Identities=26% Similarity=0.426 Sum_probs=176.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 3599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999732 111 23346677888877654322 223445679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987778999999999998755 9999999999974
No 247
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-37 Score=354.71 Aligned_cols=205 Identities=30% Similarity=0.401 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.|+++|.+.+|... . .+++ |++|++||+++++|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58899999999753 2 8999 99999999999999999999999999999999999997 7776
Q ss_pred --EEEEEcCCCcC-CCCcHHHHhccCCCCC-------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i-~~~Ti~enI~fg~~~~-------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.+|+|+|+.-+ ++.||+|||.||.... +++.+++.+...+..-++ .++.+|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHH
Confidence 47999999877 5679999999997654 345555666666555443 56789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
|||||+.++|+++|||||+|+||++.+..+-.++.+-.. -+.|+|+||||..++. -+|+|++|++|+|.+.|++.|+.
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 999999999999999999999999988877665443222 3789999999998865 49999999999999999999998
Q ss_pred hhhhhHH
Q 000560 808 ADQNSEL 814 (1421)
Q Consensus 808 ~~~~~~~ 814 (1421)
.++...+
T Consensus 223 ~~P~n~f 229 (338)
T COG3839 223 ERPANLF 229 (338)
T ss_pred hCccchh
Confidence 7554444
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=350.93 Aligned_cols=206 Identities=25% Similarity=0.447 Sum_probs=178.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 359999999999999999999999999999999999975 389999999999875 3466
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC-C--CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL-E--QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~-~--~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
++|++++|+||+|.+|.+|+++|+... . .. + ++++.++++.+++.+.+... +|. .+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~----~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDK----SALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhC----CcccCCHHHHH
Confidence 789999999999999999999999742 1 11 2 23467788888887765432 333 45679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+||||||+++|+||+|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999988778999999999998876 8999999999974
No 249
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=351.52 Aligned_cols=206 Identities=23% Similarity=0.390 Sum_probs=175.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 359999999999999999999999999999999999987 3 59999999999864 4456
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|.+|+++|+.... ..++ +++.++++..++.+.+.. .++ ....+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l~----~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD---RLH----TQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---hhh----CCcccCCHHHHH
Confidence 7889999999999999999999996321 1122 235566777777554321 123 344579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987778999999999999865 9999999999974
No 250
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.5e-37 Score=361.58 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=173.4
Q ss_pred cEEEEeeeeeeCCC-----------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC
Q 000560 1207 KIELENLLVQYNPT-----------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~-----------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~ 1275 (1421)
-++++|++++|+.. ...+++||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2359999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhcccEEEccCC--ccc-cccHhhhcCC----CC-CCCH----HHHHHHHHHcCcHHHHHhcccccCccccC
Q 000560 1276 IGLQD---LRSRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1421)
Q Consensus 1276 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1421)
++.++ +|++++||||+| .++ ..||++|+.. .. ..+. +.+.++++.+++.+. .++.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~------~~~~---- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN------LINR---- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH------HhcC----
Confidence 87544 678999999999 477 4799999852 11 2333 334566777777321 1222
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2346999999999999999999999999999999999999999999987643 7899999999999976 999999999
Q ss_pred CeeC
Q 000560 1418 GKLK 1421 (1421)
Q Consensus 1418 G~Iv 1421 (1421)
|+|+
T Consensus 238 G~iv 241 (331)
T PRK15079 238 GHAV 241 (331)
T ss_pred CEEE
Confidence 9985
No 251
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=349.95 Aligned_cols=206 Identities=26% Similarity=0.385 Sum_probs=176.6
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC---CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||++.+|..|+++|+.... .. + ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6789999999999999999999997321 11 1 23466788888875443221 22344579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|+||+|||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|+++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999987767899999999999865 9999999999974
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-37 Score=353.30 Aligned_cols=211 Identities=23% Similarity=0.367 Sum_probs=181.0
Q ss_pred CCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCC--
Q 000560 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS-- 1274 (1421)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~-- 1274 (1421)
-|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 356788999999999964 3599999999999999999999999999999999999875 7999999998874
Q ss_pred --CCChHHHhcccEEEccCCccccccHhhhcCCCC--------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1275 --MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1275 --~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
....+.+|++++|+||+|.+|.+|+++|+.... ...++++.++++.+++.+.+. ........+
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCccc
Confidence 334567889999999999999999999996421 122466788888888764332 223334567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+|||||++|||||+++|++++|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987777899999999999965 9999999999974
No 253
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-37 Score=353.23 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=178.2
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
-.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCCcccc-ccHhhhcCCCC--C---------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPLE--Q---------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~~--~---------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
+|+||++.+|. .|+++|+.... . ..++++.++++..++.+... . ....||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-------Q----SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-------C----CcccCChHHHHHH
Confidence 99999998875 59999996421 1 12345778888888876532 2 2357999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+||||++++|++|+|||||++||..+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999988643 7899999999998865 9999999999973
No 254
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=353.96 Aligned_cols=207 Identities=25% Similarity=0.427 Sum_probs=177.0
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1278 (1421)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35899999999964 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCC------CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~------~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
..+|++++|+||+|.+|.+|+++|+... ....++++.++++..++.+.+.. .++ ....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~----~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD---QLD----SSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH---HHh----CCcccCCHHHHHH
Confidence 6788999999999999989999999632 11124567888888887544322 122 3345799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEE-EEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVL-VLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIl-vL~~G~Iv 1421 (1421)
++|||||+++|+||||||||++||..+...+.+.|++..+++|||+++|+++.+.. |||++ +|++|+|+
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 99999999999999999999999999999999999998777899999999999876 99975 57999974
No 255
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.2e-37 Score=354.14 Aligned_cols=202 Identities=23% Similarity=0.358 Sum_probs=173.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH---HHhc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~ 1283 (1421)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ccEEEccCCccccc-cHhhhcCCC----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1284 RLSIIPQDPMLFQG-TVRTNLDPL----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
+++|+||++.+|.+ |+++|+... ...+. +++.++++..++.+.. +..+ .+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-------KLMP----SELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-------hCCh----hhCCHHHHHHHH
Confidence 89999999999986 999999631 11222 3455677777775433 2232 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 99999999999999999999999999999999998643 7899999999999866 9999999999973
No 256
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=356.82 Aligned_cols=204 Identities=28% Similarity=0.397 Sum_probs=171.8
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC----ChHH
Q 000560 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1280 (1421)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhcccEEEccCC--ccccccHhhhcCCC---CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1281 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
+|++++|+||+| .+|+.|+++|+... ...++++ +.++++..++.+.. ++ ....+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------FE----KNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hh----CCcccCCHHHHH
Confidence 889999999998 68889999999632 1123332 34556666654211 12 234569999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||+++...+.+.|++.. .++|||+++|+++.+.. ||+|++|++|+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998764 37899999999998865 9999999999973
No 257
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-37 Score=357.54 Aligned_cols=206 Identities=28% Similarity=0.387 Sum_probs=171.8
Q ss_pred CCcEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC----C-
Q 000560 1205 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----I- 1276 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~----i- 1276 (1421)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47799999999996532 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHHhcccEEEccCC--ccccccHhhhcCCCC---CCCHHH----HHHHHHHcCcH-HHHHhcccccCccccCCCCCCC
Q 000560 1277 GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1277 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sdee----I~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
+...+|++++|+||+| .+|..|+++|+.... ....++ +.+.++..++. ++ .+ .....||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~----~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-------VK----RSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-------hc----CChhhCC
Confidence 3567888999999998 477889999996421 123322 33455555542 11 22 3345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+. .||+|++|++|+++
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998764 3789999999999875 49999999999974
No 258
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=367.50 Aligned_cols=200 Identities=23% Similarity=0.342 Sum_probs=174.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEccCCccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999997421 122 345778888888866543333 4699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999987643 7899999999998865 9999999999974
No 259
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=349.04 Aligned_cols=201 Identities=27% Similarity=0.393 Sum_probs=175.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EccCCcc-ccccHhhhcCCCC--C-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPML-FQGTVRTNLDPLE--Q-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~L-F~gTIR~NLdp~~--~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||++.+ +..|+++|+.... . ..++++.++++..++.+... .. ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-------RD----YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-------CC----cccCCHHHHHHHHHHHHH
Confidence 9999987 6779999986421 1 12345777888888865432 22 346999999999999999
Q ss_pred c------cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1360 L------KKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 L------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
+ ++|++|+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+. -||+|++|++|+++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 9 5999999999999999999999999998764 4789999999999986 59999999999974
No 260
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=352.25 Aligned_cols=208 Identities=22% Similarity=0.369 Sum_probs=175.5
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CC
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1277 (1421)
...++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999964 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred hHHHhcccEEEccCCccccccHhhhcCCC---CCCCH-----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHSD-----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~sd-----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
...+|++++|+||+|.+|..|+++|+... ...++ +.+.++++..++.+.+. ......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 56788999999999999999999999631 12222 23455566655433222 22334456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999988778999999999999865 9999999999974
No 261
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-37 Score=347.96 Aligned_cols=199 Identities=26% Similarity=0.404 Sum_probs=174.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EccCCccccc-cHhhhcCCC-C------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~-~------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+... . ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999631 1 112456778888888876654443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++++|||||+++|..+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+++
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999988643 7999999999999865 8999999999973
No 262
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.3e-37 Score=349.95 Aligned_cols=202 Identities=26% Similarity=0.422 Sum_probs=171.6
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC--------h
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--------L 1278 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~--------l 1278 (1421)
.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEccCCcccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1279 QDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
..+|++++|+||+|.+|. .|+++|+... .... ++.+.++++..++.+. ......+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 467889999999999886 6999999631 1122 2335566666665432 223446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+.+|++|||||||++||..+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998764 37899999999999865 9999999999974
No 263
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-37 Score=360.43 Aligned_cols=205 Identities=26% Similarity=0.401 Sum_probs=173.8
Q ss_pred cEEEEeeeeeeCCC--------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh
Q 000560 1207 KIELENLLVQYNPT--------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~--------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l 1278 (1421)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999998874
Q ss_pred H---HHhcccEEEccCCc--ccc-ccHhhhcC-CC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1279 Q---DLRSRLSIIPQDPM--LFQ-GTVRTNLD-PL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1279 ~---~LR~~i~iIpQdp~--LF~-gTIR~NLd-p~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
. .+|+++++|||||. |+. -||.+|+. +. ...+ .+++.++|+++++.+ ..++... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence 3 56889999999994 554 38888874 11 1122 245678888888853 2234433 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988643 7899999999999975 9999999999985
No 264
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=322.36 Aligned_cols=205 Identities=24% Similarity=0.363 Sum_probs=171.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCC-----CcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~vi~~~g--- 659 (1421)
..++++|.++.|.. ...|++ |++|++++++|++||+||||||||+++....+..+ |+| .++|
T Consensus 6 ~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCeec
Confidence 46899999999974 368999 99999999999999999999999999999877665 555 4444
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCCCCH-------HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~~~~-------~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
++|+|+|.|--|..||.|||.+|..... +..++.++..+|.+.... .+.+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 4699999999999999999999964321 223444455555544432 23467788
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
|||||+||++||||+.-+|+|+|||||+|||||-+..+| ++++..+.++-|+|+|||+++.... +|+...+.+|++++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999887776 5678887788999999999998765 99999999999999
Q ss_pred ecCchhhhhhh
Q 000560 800 SGKYEDLIADQ 810 (1421)
Q Consensus 800 ~g~~~~l~~~~ 810 (1421)
.|+.+++..++
T Consensus 229 ~g~T~~iF~~P 239 (253)
T COG1117 229 FGPTDKIFTNP 239 (253)
T ss_pred EcCHHhhhcCc
Confidence 99999988743
No 265
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=345.55 Aligned_cols=202 Identities=23% Similarity=0.341 Sum_probs=169.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1421)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEccCCccccc-cHhhhcCCCCC-CCHH----HHHHHHHHc-CcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-HSDQ----EIWEVINKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~sde----eI~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
+|+||++.+|.+ |+++|+..... .+.+ ++.++++.. ++.+ ..+. ....||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~----~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRIQ----RAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHhC----chhhCCHHHHHHHHHHHH
Confidence 999999999985 99999964211 1222 233333333 1221 1222 345799999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
++++|+||+|||||++||+.+...+.+.|++.. +++|||++||+++.+. .||||++|++|+++
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 999999999999999999999999999998764 4799999999999775 49999999999974
No 266
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.3e-37 Score=336.65 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=180.0
Q ss_pred EEEEeeEEEeCCcccccCCC--cccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCEEEEEcCC
Q 000560 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~--~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~iayv~Q~ 667 (1421)
++++|++++|+.. .. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|+++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4689999999643 11 368999 99999999999999999999999999999999999997 899999999999
Q ss_pred CcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCC
Q 000560 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1421)
Q Consensus 668 ~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 747 (1421)
|.+++.|++||+.++..++.++..+..+.+++.+.+..+|.|..+..++++.+||||||||++||||++++|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999877766677778888889888999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhccCEEEEEeCCE
Q 000560 748 FSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1421)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1421)
|++||++..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999998888887666544 34799999999999987899999999985
No 267
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=355.36 Aligned_cols=204 Identities=32% Similarity=0.439 Sum_probs=172.4
Q ss_pred cEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC----ChH
Q 000560 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----~l~ 1279 (1421)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 3599999999999999999999999999999999999999999999999998753 245
Q ss_pred HHhcccEEEccCC--ccccccHhhhcCCC---CCCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhH
Q 000560 1280 DLRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
..|+.++|+||+| .+|..|+++|+... ...+. +.+.++++.+++. ++. +. ...+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~----~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-------SK----SPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-------hC----CcccCCHHH
Confidence 6788999999998 57888999999631 12222 2356667777764 232 22 234699999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. ++.|||++||+++.+. -||+|++|++|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999864 4789999999999985 59999999999974
No 268
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-37 Score=329.00 Aligned_cols=170 Identities=31% Similarity=0.533 Sum_probs=157.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+.. ++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999642 5999999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999887 9999974 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCee
Q 000560 1367 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKL 1420 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~I 1420 (1421)
+|||||++||..+...+.+.|++.. ++.|+|+++|+.+.+. .||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 4689999999999887 5999999999985
No 269
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=343.14 Aligned_cols=162 Identities=27% Similarity=0.422 Sum_probs=125.6
Q ss_pred EeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCC-ccccccHhhhcCCCC--
Q 000560 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNLDPLE-- 1307 (1421)
Q Consensus 1231 ~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1307 (1421)
+|..||.+|++||||-||||++++|.|.++|++|+ ..++ +++|=||-- .-|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45678899999999999999999999999999998 2322 689999942 238999998774211
Q ss_pred CCCHHHHH-HHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000560 1308 QHSDQEIW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1386 (1421)
Q Consensus 1308 ~~sdeeI~-~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1386 (1421)
.+.+.-.+ +..+-.+|.+ -+|.++ .+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~-------i~e~~v----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLED-------LLERPV----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcCccchHH-------HHhccc----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 12222111 1222233322 234455 46999999999999999999999999999999999999999999
Q ss_pred HHHH--cCCcEEEEEecChhhhh-ccCEEEEEeC
Q 000560 1387 IREE--TSRCTVITVAHRIPTVI-DNDLVLVLDE 1417 (1421)
Q Consensus 1387 I~~~--~~~~TVI~IAHRl~ti~-~~DrIlvL~~ 1417 (1421)
||+. ..++|.++|-|++-.+. -+||++|.+.
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9874 36789999999998874 3999999863
No 270
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=350.94 Aligned_cols=207 Identities=25% Similarity=0.394 Sum_probs=176.9
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1278 (1421)
+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
..+|.+++++||+|.+|..|+++|+... +... ++.+.++++.+++.+.+... ++ ..+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LN----KSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hc----CCcccCCHHHH
Confidence 6788899999999999999999999632 1112 23456788888886554322 23 34457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe-----CCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-----EGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~-----~G~Iv 1421 (1421)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||++++|+ +|+++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 9999999999999999999999999999999999999987777999999999999865 99999997 48874
No 271
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.7e-37 Score=364.49 Aligned_cols=202 Identities=23% Similarity=0.406 Sum_probs=176.4
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCc--cEEEEcCeeCCCCChHHHh
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG--GRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~--G~I~IDG~dI~~i~l~~LR 1282 (1421)
.|.|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999964 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cccEEEccCCccccc-cHhhhcCC-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1283 SRLSIIPQDPMLFQG-TVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp-~--~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
+++++++|++.+|.. |+++|+.. . ...+ ++++.++++.++|.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 99999973 2 1223 234667788888876654443 369999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC---CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS---RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~---~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+++
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999987643 6899999999998765 9999999999974
No 272
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=355.42 Aligned_cols=209 Identities=33% Similarity=0.430 Sum_probs=175.9
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE-------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~------- 660 (1421)
..++++|++-+|.. ...++| ||+|++||+++++|||||||||||++|+|..+|++|+| .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46899999999873 478999 99999999999999999999999999999999999997 77773
Q ss_pred ----EEEEcCCCcCC-CCcHHHHhccCCCCC-----H---HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 661 ----KAYVPQSSWIQ-TGTIRENILFGKDMR-----Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 661 ----iayv~Q~~~i~-~~Ti~enI~fg~~~~-----~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
+++|+|+--+| +.||+|||.||.... + ++.++.++..+|.. .-.+++.+|||||||
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHH
Confidence 69999997775 789999999997722 2 24455555444433 123678899999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccc-hhccCEEEEEeCCEEEEecCchh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||+|||||..+|+++|||||+||||.+.+.++-.++..... .|.|.|+||||.++ +..+|||++|++|+|.+.|+++|
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999998888776654333 38999999999987 56699999999999999999999
Q ss_pred hhhhhhhHHHHH
Q 000560 806 LIADQNSELVRQ 817 (1421)
Q Consensus 806 l~~~~~~~~~~~ 817 (1421)
+...+...|...
T Consensus 224 iY~~P~~~fVA~ 235 (352)
T COG3842 224 IYERPATRFVAD 235 (352)
T ss_pred HhhCcchHHHHH
Confidence 988666655543
No 273
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-37 Score=330.02 Aligned_cols=172 Identities=35% Similarity=0.530 Sum_probs=159.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC--hHHHhccc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1285 (1421)
|+++|++++|+. +++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
+|+||+|.+|.+ |+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998753 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1365 ILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
+++|||||++||..+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988654 5899999999999985 99999999995
No 274
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.4e-37 Score=363.68 Aligned_cols=201 Identities=23% Similarity=0.412 Sum_probs=177.2
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..++++|++++|.. ..+|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
++++|++.+|.. ||++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999742 1 122 345677888888887766555 369999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||+|++|++|+|+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999998653 7899999999998764 9999999999974
No 275
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-37 Score=349.30 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=176.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.|+++|++++|++ +.+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
..|++++|+||+|.+|++|+++|+.... . . .++.+.++++.+++.+.+. ......+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 7888999999999999999999997421 1 1 1334667777777654332 2234445679999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++.+|++++|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|+++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987777999999999999965 9999999999974
No 276
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-37 Score=348.95 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=171.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1285 (1421)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999964 359999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEEccCCccccc-cHhhhcCCCCC-------------------CC---HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-------------------HS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-------------------~s---deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1421)
+|+||+|.+|.+ |+++|+..... .. .+++.+.++..++.+. .....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999986 99999874210 00 1234444555555432 33344
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCe
Q 000560 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1419 (1421)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1419 (1421)
.+||+|||||++||||++.+|++|+|||||++||..+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 57999999999999999999999999999999999999999999987643 7899999999999866 99999999999
Q ss_pred eC
Q 000560 1420 LK 1421 (1421)
Q Consensus 1420 Iv 1421 (1421)
++
T Consensus 232 i~ 233 (255)
T PRK11300 232 PL 233 (255)
T ss_pred EE
Confidence 74
No 277
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-37 Score=345.10 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=171.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1421)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999964 35999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEccCCccccc-cHhhhcCCCC----CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLE----QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~----~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+++||+|.+|.+ |+++|+.... ..+. +.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998875 9999997431 1122 234455555555432 2333457999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++++|++|+|||||++||+.+...+.+.+++.. +++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence 99999999999999999999999999999998754 47899999999987754 9999999999974
No 278
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.9e-37 Score=345.03 Aligned_cols=199 Identities=26% Similarity=0.425 Sum_probs=173.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|++ +.+|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999986643 4788999
Q ss_pred EccCCccccc-cHhhhcCCCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+.... .. .++++.+++++.++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996421 11 234567778888776554332 246999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+++
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999987643 7899999999999866 9999999999974
No 279
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.8e-37 Score=350.32 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=171.8
Q ss_pred EEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH
Q 000560 1208 IELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~ 1280 (1421)
|+++||+++|++. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcccEEEccCCc--cc-cccHhhhcCC----CCC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000560 1281 ---LRSRLSIIPQDPM--LF-QGTVRTNLDP----LEQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1281 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
+|++++|+||+|. ++ ..|+++|+.. ... ..++++.++++..++.+.. +| ....+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~----~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------AD----KLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hh----CChhhCC
Confidence 6788999999983 44 4699999842 111 1234566777777764211 22 2345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||++|||||+.+|++|+|||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||++++|++|+++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999975 9999999999974
No 280
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=352.30 Aligned_cols=201 Identities=28% Similarity=0.429 Sum_probs=172.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC--CCChHHHhccc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~i 1285 (1421)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999964 35999999999999999999999999999999999999999999999999985 33456788899
Q ss_pred EEEccCCc--cccccHhhhcCCC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPM--LFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~--LF~gTIR~NLdp~---~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|+||+|. +|..|+.+|+... ...++ +++.++++..++.++. +.+ ..+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQP----IQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cCC----chhCCHHHHHHHHHH
Confidence 99999985 6778999998642 11222 3456677777776543 333 346999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~ 215 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999998864 47899999999999865 9999999999974
No 281
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.1e-37 Score=356.96 Aligned_cols=200 Identities=24% Similarity=0.371 Sum_probs=175.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999977 44678999999
Q ss_pred EccCCccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++||.... ..+ .+++.++++..++.+.. +. ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-------HK----KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-------cC----chhhCCHHHHHHHHHHHHH
Confidence 9999999977 9999996321 122 34566677777765443 22 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++|+|||||++||+.+...+++.|++..+++|||+++|+++.+.+ ||||++|++|+++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998778999999999999876 9999999999974
No 282
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=346.92 Aligned_cols=206 Identities=26% Similarity=0.416 Sum_probs=176.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCC-CCChHH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS-MIGLQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~-~i~l~~ 1280 (1421)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999964 4599999999999999999999999999999999999986 5999999999986 455677
Q ss_pred HhcccEEEccCCccccccHhhhcCCC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. +.++. ....||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~----~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK---DRLKS----HAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh---HHhhc----CcccCCHHHHHH
Confidence 89999999999999999999999742 111 1 234566777777765432 12233 345799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|+|||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988777999999999999876 9999999999974
No 283
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8e-37 Score=348.71 Aligned_cols=201 Identities=26% Similarity=0.390 Sum_probs=175.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCc-cccccHhhhcCCCC----C-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000560 1288 IPQDPM-LFQGTVRTNLDPLE----Q-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1355 (1421)
Q Consensus 1288 IpQdp~-LF~gTIR~NLdp~~----~-------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1355 (1421)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.. |.. ...||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-------DRD----MSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-------cCC----cccCCHHHHHHHHH
Confidence 999985 45679999996421 0 1233577888888886543 333 34699999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1356 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1356 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||++.+|++++|||||++||..+...+.+.|++.. ++.|||+++|+++.+. -||+|++|++|+++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 999999999999999999999999999999999764 3689999999999995 59999999999974
No 284
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=348.88 Aligned_cols=206 Identities=22% Similarity=0.400 Sum_probs=176.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 359999999999999999999999999999999999986 479999999999853 4556
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
.+|++++++||+|.+|+.|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7889999999999999899999997421 11 234566678888887655321 2334567999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe---------CCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~---------~G~Iv 1421 (1421)
+|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||||++|+ +|+|+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999999999987777899999999998865 89999998 78874
No 285
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=341.18 Aligned_cols=197 Identities=24% Similarity=0.410 Sum_probs=172.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++||+++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999987644 3678999
Q ss_pred EccCCccccc-cHhhhcCC-CC-C-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQG-TVRTNLDP-LE-Q-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp-~~-~-----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|.+ |+++|+.. .. . ..++++.++++.+++.+.+...| ..||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999973 21 1 12456888999999987765544 25999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|+++||||||++||.++...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999998643 7899999999999865 8999999999973
No 286
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.3e-36 Score=341.18 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=179.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|+++.|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4688999999642 2468999 99999999999999999999999999999999999987 6665
Q ss_pred ---EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|++|++++++.|++||+.++.. .......+.++...+.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3799999999988999999998653 233334444555566666777777777778889999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+.+|+++||||||++||+.+...+.+. +..+.+++|+|++||+++++..||++++|++|++++.|+.+++.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999988877764 444456899999999999987899999999999999999988876
No 287
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.9e-37 Score=356.57 Aligned_cols=201 Identities=25% Similarity=0.356 Sum_probs=172.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEccCCcccc-ccHhhhcCCC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQ-GTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~-gTIR~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||+|.++. .|+++|+... ...+++ ++.++++.+++.+ .++..+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999632 123333 3445566666543 234444 3699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999998864 47899999999999865 9999999999974
No 288
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=349.89 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=175.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCCC-hHH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIG-LQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i~-l~~ 1280 (1421)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 3599999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEccCCccccccHhhhcCCC----CCCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1281 LRSRLSIIPQDPMLFQGTVRTNLDPL----EQHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sdeeI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
+|++++|+||+|.+|..|+++|+... ...+++++ .+.++.+++.+.. ++.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 78999999999999999999999742 12344443 3455666654332 122334556899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|+++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987667899999999999865 9999999999974
No 289
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=354.97 Aligned_cols=208 Identities=27% Similarity=0.456 Sum_probs=178.0
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCCC--C
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--G 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1277 (1421)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhcccEEEccCCccccccHhhhcCCCC--------------------CCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000560 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--------------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1337 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~ 1337 (1421)
...+|++++|+||++.+|.+|+++|+.... +..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 567889999999999999999999997320 012345777788887754332 23
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEE-EEE
Q 000560 1338 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLV-LVL 1415 (1421)
Q Consensus 1338 v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrI-lvL 1415 (1421)
......+||||||||++|||||+++|+||||||||++||..+...+.+.|++..++.|||+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34455689999999999999999999999999999999999999999999988777899999999999865 9997 578
Q ss_pred eCCeeC
Q 000560 1416 DEGKLK 1421 (1421)
Q Consensus 1416 ~~G~Iv 1421 (1421)
++|+++
T Consensus 274 ~~G~i~ 279 (305)
T PRK14264 274 TGGELV 279 (305)
T ss_pred cCCEEE
Confidence 999974
No 290
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-37 Score=351.03 Aligned_cols=202 Identities=28% Similarity=0.427 Sum_probs=173.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC--CChHHHhccc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1285 (1421)
|+++|++++|+.+ +++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 359999999999999999999999999999999999999999999999999853 2345688999
Q ss_pred EEEccCC--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.++. |..+ .+||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------NKPP----HHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------cCCh----hhCCHHHHHHHHHH
Confidence 9999998 578899999996311 122 24566788888875432 3333 46999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999864 37899999999999875 9999999999974
No 291
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-37 Score=347.39 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=168.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EccCCcccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999642 1122 2356778888887654332 2356999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEe--CCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~--~G~Iv 1421 (1421)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|+ +|+|+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 99999999999999999999999999998863 47999999999999865 99999998 48874
No 292
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=348.84 Aligned_cols=208 Identities=26% Similarity=0.415 Sum_probs=177.3
Q ss_pred CCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CC
Q 000560 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IG 1277 (1421)
Q Consensus 1205 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1277 (1421)
...|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 346999999999964 3599999999999999999999999999999999999863 69999999999864 34
Q ss_pred hHHHhcccEEEccCCccccccHhhhcCCCC---C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1278 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~---~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
...+|++++|+||++.+|.+|+++|+.... . ..++++.++++.+++.+.+.. .++ .....|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHHH
Confidence 456789999999999999899999996421 1 124456677888887655432 223 334579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe---------CCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~---------~G~Iv 1421 (1421)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999865 99999997 78874
No 293
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-37 Score=364.27 Aligned_cols=188 Identities=26% Similarity=0.410 Sum_probs=165.1
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH----hcccEEEccCCccccc-
Q 000560 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG- 1297 (1421)
Q Consensus 1223 ~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1297 (1421)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998877654 3589999999999975
Q ss_pred cHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000560 1298 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1421)
Q Consensus 1298 TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1370 (1421)
|+++|+... ...+ ++++.++++.++|.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999642 1122 345778888888876654443 3699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1371 ATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++||+.+...+++.|++.. .++|||+|||+++.+.. ||+|++|++|+++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998864 47899999999999865 9999999999974
No 294
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.5e-37 Score=359.68 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=173.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56889999
Q ss_pred EEccCCccc-cccHhhhcCCCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLF-QGTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF-~gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||++.++ ..|+++|+..+. ..+.+ .+.++++.+++.+ ..+..++ +||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~~----~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARVS----DLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCChh----hCCHHHHHHHHHHHH
Confidence 999999887 559999997422 12222 3445566665543 3455553 699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+.+|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.+ ||+|++|++|+++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999864 47999999999999965 9999999999974
No 295
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=347.88 Aligned_cols=206 Identities=24% Similarity=0.417 Sum_probs=174.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.++++|++++|+.. .+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999642 599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhcccEEEccCCcccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1280 DLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
.+|+.++++||++.+|. .|+++|+... +..+ ++.+.++++.+++.+.+.. .++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLD----KPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---Hhh----CCcccCCHHHH
Confidence 78899999999999997 4999998631 1111 3456677888877543321 123 33457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe------CCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD------EGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~------~G~Iv 1421 (1421)
||++||||++++|++|+|||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|+|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999987667899999999999864 99999997 79874
No 296
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=343.07 Aligned_cols=198 Identities=27% Similarity=0.439 Sum_probs=173.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EccCCcccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
+||++.+|. .|+++|+... ... .++++.++++.+++.+.+.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999631 111 2345678888888876654433 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+++|++++|||||++||..+.+.+.+.+++..+ ++|+|+++|+++.+.+ ||+|++|++|+++
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999998643 7999999999999876 9999999999974
No 297
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=346.67 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=174.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1279 (1421)
.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 459999999999999999999999999999999999975 4 59999999999864 3445
Q ss_pred HHhcccEEEccCCccccccHhhhcCCC---CC--C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ--H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~--~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
.+|++++|+||+|.+|..|+++|+... .. . .++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 11 1 1345666777777654332 1123334579999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI 226 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999974
No 298
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.7e-37 Score=352.70 Aligned_cols=202 Identities=29% Similarity=0.504 Sum_probs=178.9
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++.+|..+ ..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999732 3599999999999999999999999999999999999999999999999998765 678999999
Q ss_pred EEccCCccccc-cHhhhcCCCC-------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPLE-------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~~-------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +.++ ..||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHHH
Confidence 99999998866 9999998532 12356788999999987621 3333 4599999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII 216 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999765 4 699999999999987 9999999999974
No 299
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1e-36 Score=345.37 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=169.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCeeCCCCChHHH-hcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDL-RSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~--~p~~G~I~IDG~dI~~i~l~~L-R~~ 1284 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999964 35999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred cEEEccCCccccc-cHhhhcCCC----CC------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQ------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1349 (1421)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999886 899998521 10 11 23456667776664211 233332 2499999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc--cCEEEEEeCCeeC
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~--~DrIlvL~~G~Iv 1421 (1421)
|||++|||||+++|++|+|||||++||..+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 999999999999999999999999999999999999999864 47899999999999976 7999999999974
No 300
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-36 Score=329.41 Aligned_cols=172 Identities=27% Similarity=0.480 Sum_probs=156.9
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh-HHHhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1285 (1421)
.|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988874 4568899
Q ss_pred EEEccCC----ccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1286 SIIPQDP----MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1286 ~iIpQdp----~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864210 99999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999977 999999999985
No 301
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=346.41 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=178.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCC--ChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1279 (1421)
.+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999987 799999999998653 444
Q ss_pred HHhcccEEEccCCccccccHhhhcCCCCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1280 DLRSRLSIIPQDPMLFQGTVRTNLDPLEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999974311 1235678889998886655322 2345568999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEe--------CCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD--------EGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~--------~G~Iv 1421 (1421)
+|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|+++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999988777899999999999865 99999996 78874
No 302
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=346.87 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=176.9
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCeeCCC--CCh
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~-----~G~I~IDG~dI~~--i~l 1278 (1421)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
..+|+.++++||++.+|..|+++|+... +..+ ++++.++++.+++.+++..+ .......||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 5788999999999999999999999632 1112 23467788888886655422 2334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeC-----CeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDE-----GKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~-----G~Iv 1421 (1421)
||++|||||+++|++|+|||||+++|.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 99999999999999999999999999999999999998742 47999999999999865 899999999 9874
No 303
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-37 Score=350.81 Aligned_cols=201 Identities=23% Similarity=0.384 Sum_probs=180.1
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.+||.||..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 34699999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEccCCccccc-cHhhhcCCC-C---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPL-E---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1356 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1356 (1421)
++|+|+..||+- ||++|+.+. . ...+ +.+.++|+.++|.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999976 999998753 2 1233 367899999999998877764 5899999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhh-hccCEEEEEeCCeeC
Q 000560 1357 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1357 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti-~~~DrIlvL~~G~Iv 1421 (1421)
|||..+|++|+||||-|+||..-...+|.-+++.. .+.|.|.|||+-+.. .-+|||.||++|+|.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 99999999999999999999999999998888753 378999999998875 459999999999984
No 304
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=355.95 Aligned_cols=207 Identities=21% Similarity=0.346 Sum_probs=171.1
Q ss_pred cEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC----CCccEEEEcCeeCCCCChHH
Q 000560 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1280 (1421)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEccCCc--ccc-ccHhhhc----CCCCCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1281 LRS----RLSIIPQDPM--LFQ-GTVRTNL----DPLEQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1281 LR~----~i~iIpQdp~--LF~-gTIR~NL----dp~~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
+|+ ++++|||+|. ++. -|+.+|+ ...... ..+++.++|++++|.+.... ++ ....+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~----~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LD----VYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hh----CCchhC
Confidence 654 6999999995 332 2555544 322111 23457788888888642211 22 334579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999864 3789999999999985 59999999999985
No 305
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-36 Score=348.03 Aligned_cols=204 Identities=26% Similarity=0.387 Sum_probs=172.1
Q ss_pred cEEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH
Q 000560 1207 KIELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1279 (1421)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 23599999999999999999999999999999999999999999999999999765566
Q ss_pred HHhcccEEEccCCc--cccc-cHhhhcCC---CC-C----CCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCCh
Q 000560 1280 DLRSRLSIIPQDPM--LFQG-TVRTNLDP---LE-Q----HSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp---~~-~----~sdeeI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
..|++++|+||+|. ++.. |+.+|+.. .. . ..++++.++++.+++. +.. +..+ .+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SYYP----HMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hcCc----hhcCH
Confidence 66778999999985 4443 78888752 11 1 1235678888888884 322 2222 46999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999864 37899999999999986 9999999999974
No 306
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=350.55 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=174.7
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCeeCCCC--Ch
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--GL 1278 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-----p~~G~I~IDG~dI~~i--~l 1278 (1421)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999964 359999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HHHhcccEEEccCCccccccHhhhcCCCC---CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
..+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++..++.+.+. +.++. ....||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK----NALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC----ChhhCCHHHH
Confidence 46788999999999999899999997321 11 1 234567777777653322 22333 3457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++|||||+++|++|||||||++||.++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987667899999999999865 9999999999974
No 307
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=345.00 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=172.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCeeCCC--CChH
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~-----~G~I~IDG~dI~~--i~l~ 1279 (1421)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999964 35999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred HHhcccEEEccCCccccc-cHhhhcCCC---CC-CCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ-HSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~-~sdeeI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
.+|++++|+||+|.+|.+ |+++|+... .. ..+++. .+.++..++.+.+ ++.++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 999999631 11 123333 3334455554332 2334444 357999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|++|+|||||++||..+...+.+.|++..+++|+|+++|+++.+.+ ||||++|++|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987677999999999999886 8999999999974
No 308
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-36 Score=345.11 Aligned_cols=201 Identities=23% Similarity=0.350 Sum_probs=174.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC--------ccEEEEcCeeCCCCChH
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--------GGRILIDGVDISMIGLQ 1279 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~--------~G~I~IDG~dI~~i~l~ 1279 (1421)
++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhcccEEEccCCc-cccccHhhhcCCCC--------CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000560 1280 DLRSRLSIIPQDPM-LFQGTVRTNLDPLE--------QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1347 (1421)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+.. + .....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-------G----RDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-------c----CCcccCCH
Confidence 88889999999985 67889999996421 11 123467778887775432 2 23457999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEE
Q 000560 1348 GQRQLVCLARVLL---------KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVL 1415 (1421)
Q Consensus 1348 GQrQrl~LARALL---------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL 1415 (1421)
|||||++|||||+ .+|++|+|||||++||+.+...+.+.|++..+ ++|||+|+|+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998643 689999999999986 49999999
Q ss_pred eCCeeC
Q 000560 1416 DEGKLK 1421 (1421)
Q Consensus 1416 ~~G~Iv 1421 (1421)
++|+|+
T Consensus 229 ~~G~i~ 234 (272)
T PRK13547 229 ADGAIV 234 (272)
T ss_pred ECCeEE
Confidence 999974
No 309
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.3e-36 Score=335.76 Aligned_cols=193 Identities=25% Similarity=0.348 Sum_probs=165.2
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh----HHHhccc
Q 000560 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSRL 1285 (1421)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~i 1285 (1421)
++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 359999999999999999999999999999999999999999999999999775542 2467889
Q ss_pred EEEccCCcccc-ccHhhhcCCC---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQ-GTVRTNLDPL---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~-gTIR~NLdp~---~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+++||+|.+|. .|+++|+... .. ..++++.++++..++.+.. |.. ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-------KQK----IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-------cCC----hhhCCHHHHHHHHHHH
Confidence 99999999997 6999999641 11 1245577788888875543 233 3469999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEEEEE
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL 1415 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL 1415 (1421)
||+++|++|+|||||++||+++...+.+.|++.. ++.|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 478999999999988889999986
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.8e-36 Score=320.86 Aligned_cols=164 Identities=34% Similarity=0.422 Sum_probs=150.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 45999999999999999999999999999999999999999999999973 68999
Q ss_pred EccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1288 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1288 IpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999642 135799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCCe
Q 000560 1368 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1419 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1419 (1421)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 589999999998888899999999864
No 311
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=359.46 Aligned_cols=201 Identities=25% Similarity=0.423 Sum_probs=174.2
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhccc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1285 (1421)
..++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 359999999999999999999999999999999999999999999999999987664 47789
Q ss_pred EEEccCCccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+|++|++.+|.. |+++|+... . ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999742 1 222 245667788888865544333 369999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|+++
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999988887653 36899999999998755 9999999999974
No 312
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9e-36 Score=340.00 Aligned_cols=213 Identities=30% Similarity=0.368 Sum_probs=187.2
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 18 ~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCCH
Confidence 469999999999742 2468999 99999999999999999999999999999999999987 6654
Q ss_pred -----EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
.++|++|+|+++++|++||+........+...+.++...+.+.++.++.|..+.+++++.+||||||||++||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 479999999999999999997664444555667777778888888888888899999999999999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhhh
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 809 (1421)
++++|++++|||||++||+++...+++ ++....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999998776655 45555568999999999999888999999999999999999888763
No 313
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-36 Score=324.82 Aligned_cols=194 Identities=30% Similarity=0.408 Sum_probs=155.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+-.|.... .....|++ ||+|++||+++|+||+||||||||++|.|...|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 45677777675431 12568999 99999999999999999999999999999999999987 6766
Q ss_pred -------EEEEEcCCCcC-CCCcHHHHhccCC----CCC---HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 -------KKAYVPQSSWI-QTGTIRENILFGK----DMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 -------~iayv~Q~~~i-~~~Ti~enI~fg~----~~~---~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.+|||+|+.-+ ++.|++|||.+.. ... .++.++.++..+|.+.. ...++.+||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHH
Confidence 37999999664 6789999999532 221 23333344433443221 12567899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhccCEEEEEeCCEEEE
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~ 799 (1421)
||||||||||++.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++..
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999875544433 4899999999999999999999999999543
No 314
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-36 Score=335.94 Aligned_cols=210 Identities=29% Similarity=0.467 Sum_probs=183.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 47899999999632 358999 99999999999999999999999999999999999987 6654
Q ss_pred ----EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
.++|++|+++++..|++||+.++.+. ...+.++.++.+++...++.++.|..+..+.+..+||||||||++||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 37999999999888999999987543 3455566677778887788888888888888999999999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
++++|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++.++.||++++|++|++.+.|+.+++..
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999998887765 4555556899999999999988899999999999999998877654
No 315
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-36 Score=353.35 Aligned_cols=192 Identities=25% Similarity=0.415 Sum_probs=166.2
Q ss_pred eeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCccc
Q 000560 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1421)
Q Consensus 1216 ~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1295 (1421)
+|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 359999999999999999999999999999999999999999999999999976 3456789999999999999
Q ss_pred cc-cHhhhcCCCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000560 1296 QG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1367 (1421)
Q Consensus 1296 ~g-TIR~NLdp~~---~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1367 (1421)
.+ |+++|+.... ..+ ++++.++++.+++.+.. +..+ .+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 112 34577788888876533 3333 4699999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1368 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1368 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999998864 47899999999999875 9999999999974
No 316
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-36 Score=354.31 Aligned_cols=207 Identities=25% Similarity=0.374 Sum_probs=171.3
Q ss_pred cEEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC---ccEEEEcCeeCCCCChHHH
Q 000560 1207 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIGLQDL 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~---~G~I~IDG~dI~~i~l~~L 1281 (1421)
.++++|++++|+. +...+++||||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 2236999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEccCC--cccc-ccHhhhcC----CCCCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000560 1282 R----SRLSIIPQDP--MLFQ-GTVRTNLD----PLEQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1282 R----~~i~iIpQdp--~LF~-gTIR~NLd----p~~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
| ++|++||||| .++. -|+.+|+. .....+. +++.+.|+.+++.+ +. ..+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 4 4799999999 4554 37777663 2222232 23556666666532 11 12344556799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999864 9999999999985
No 317
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-36 Score=337.01 Aligned_cols=186 Identities=25% Similarity=0.332 Sum_probs=144.2
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.+-+.||+|.|+... +.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|...=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 467899999997654 58999999999999999999999999999999999999999976432 355789
Q ss_pred EEccCCc--c-ccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1287 IIPQDPM--L-FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1287 iIpQdp~--L-F~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
..-|... | -+.|--+.|.-.-...-++-+.+|...||..... |. .-..|||||+-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------Ti---kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------TI---KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------eE---eeeecCCcchHHHHHHHHhcCCC
Confidence 8888652 1 2224444443222334456667777777654322 21 12469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhc--cCEEEEEeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID--NDLVLVLDE 1417 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~--~DrIlvL~~ 1417 (1421)
+||||||||.+||.++-..+-++|+++ +..||+|+|+-..|.. |.- +|+++
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~L-wVvE~ 776 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNL-WVVEN 776 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceE-EEEcc
Confidence 999999999999999999999999985 4479999999888754 543 44443
No 318
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-36 Score=305.85 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=164.2
Q ss_pred EEEEeeEEEeCCcccccCCCcccccCceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g----------- 659 (1421)
+.+++++|+|+.. . +.-++.|++||++||+||+||||||||+.|.|...|.+|++ .++|
T Consensus 2 l~L~~V~~~y~~~-------~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL-------P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc-------e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567888888643 1 11168999999999999999999999999999999999997 7776
Q ss_pred EEEEEcCCCcCCC-CcHHHHhccCCC-------CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHH
Q 000560 660 KKAYVPQSSWIQT-GTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1421)
Q Consensus 660 ~iayv~Q~~~i~~-~Ti~enI~fg~~-------~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~L 731 (1421)
.+++++|+.-+|. .||++||-+|.. .++++.+.+....+|....+.+| .+|||||||||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHH
Confidence 3699999998885 699999999954 23456666677777766555544 5899999999999
Q ss_pred HHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhh
Q 000560 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 732 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
||++.++.+|+|||||||||||.-+...... +..+. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~L-v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLAL-VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHHH-HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 9999999999999999999999987776653 33332 57899999999998865 99999999999999999999876
Q ss_pred h
Q 000560 809 D 809 (1421)
Q Consensus 809 ~ 809 (1421)
.
T Consensus 220 ~ 220 (231)
T COG3840 220 G 220 (231)
T ss_pred c
Confidence 3
No 319
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.4e-36 Score=336.38 Aligned_cols=211 Identities=32% Similarity=0.475 Sum_probs=181.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|+++.|+.. ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4688999999643 23468999 99999999999999999999999999999999999997 6655
Q ss_pred ---EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|++|++.+++.|++||+.++... ..+...+.++.+.+.+.++.++.|..+..+.+..+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 38999999998888999999987543 33444556666777777778888877788888999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+.+|+++||||||++||++..+.+.+. +..+.+++|+|++||+++++..||+|++|++|++++.|+.+++..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEA-LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999988877664 444447899999999999988899999999999999998877765
No 320
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.6e-36 Score=334.76 Aligned_cols=197 Identities=28% Similarity=0.436 Sum_probs=171.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... . ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999987642 2 357999
Q ss_pred EccCCcccc-ccHhhhcCCC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+||++.+|. .|+++|+... ...+++++.++++..++.+.... . ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-------K----AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-------h----HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998631 23456788889999988765433 2 2469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
++|+|||||++||..+.+.+.+.|++.. +++|+|++||+++.+. -||+|++|++|+++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 9999999999999999999999998764 4789999999999985 49999999999973
No 321
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.3e-36 Score=338.58 Aligned_cols=200 Identities=24% Similarity=0.344 Sum_probs=165.9
Q ss_pred EEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCeeCCCCChHHHh
Q 000560 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR 1282 (1421)
++|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cccEEEccCCccccc-cHhhhcCCC---C--CCCHH-----HHHH-HHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1283 SRLSIIPQDPMLFQG-TVRTNLDPL---E--QHSDQ-----EIWE-VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sde-----eI~~-aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999988 999999732 1 11111 1112 333333322 22234457999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCh-hhh-hccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRI-PTV-IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl-~ti-~~~DrIlvL~~G~Iv 1421 (1421)
||++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+++|++ ..+ ..||+|++|++|+++
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999998764 478999999998 355 569999999999984
No 322
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=334.82 Aligned_cols=210 Identities=31% Similarity=0.490 Sum_probs=182.2
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4688999999643 2368999 99999999999999999999999999999999999987 6655
Q ss_pred ---EEEEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|++|++++++.|++||+.++.. .....+.+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 3799999999988999999998754 334455666667777777888887877788889999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+++|+++||||||++||+.+...+.+ ++....+++|+|++||+++++..||++++|++|++.+.|+.+++.+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999998877765 5555556899999999999988899999999999999999887765
No 323
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-36 Score=329.78 Aligned_cols=187 Identities=25% Similarity=0.297 Sum_probs=159.1
Q ss_pred cEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCeeCCCCChHHH
Q 000560 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDL 1281 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~---p~~G~I~IDG~dI~~i~l~~L 1281 (1421)
.+.++||+|.|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998764 457
Q ss_pred hcccEEEccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000560 1282 RSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1421)
|++++|+||++.+|.+ |+++|+...... . .+.. ...||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~~~----~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GNEF----VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cccc----hhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 2222 3469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEe-cChhhh-hccCEEEEEeCCeeC
Q 000560 1361 KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVA-HRIPTV-IDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1361 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IA-HRl~ti-~~~DrIlvL~~G~Iv 1421 (1421)
++|++|+|||||++||+++.+.+.+.|++..+ ++|+|+++ |+.+.+ ..||+|++|++|+++
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 99999999999999999999999999998653 46766655 555666 459999999999974
No 324
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-35 Score=334.03 Aligned_cols=209 Identities=33% Similarity=0.527 Sum_probs=181.5
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.. .+.+++ |+++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4688999998632 358899 99999999999999999999999999999999999997 6665
Q ss_pred ---EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|++|++++++.|++||+.++... ......+.++.+.+.+.++.++.|..+.++.++.+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 27999999999999999999987542 33344556677778777888888888888889999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhhh
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+++|+++||||||++||+++...+.+. +....+++|+|++||+++++..||++++|++|++.+.|+.+++.+
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAA-LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999998877764 444444899999999999988899999999999999998887765
No 325
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-36 Score=352.84 Aligned_cols=203 Identities=27% Similarity=0.374 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+.+ .+.|++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 37899999999422 368999 99999999999999999999999999999999999997 6766
Q ss_pred --EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.+|||+|++.++ +.||+|||.|+... .. ++.+++++..++... .+.+..+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHH
Confidence 389999999887 57999999998542 22 223444554444322 2356779999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
+|||||+.+|+++|||||||+||+...+.+.+.+.+-..+ |.|+|+||||++++. .||+|++|++|++.+.|+++++.
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999988887755433233 799999999999875 49999999999999999999987
Q ss_pred hhhh
Q 000560 808 ADQN 811 (1421)
Q Consensus 808 ~~~~ 811 (1421)
+++.
T Consensus 224 ~~p~ 227 (356)
T PRK11650 224 EKPA 227 (356)
T ss_pred hCCc
Confidence 6443
No 326
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-35 Score=331.03 Aligned_cols=205 Identities=29% Similarity=0.398 Sum_probs=181.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 47899999999743 2468999 99999999999999999999999999999999999987 5654
Q ss_pred ----EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHh
Q 000560 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl 735 (1421)
.++|++|+|.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4799999999988999999987766666666677788888888888899999999999999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecC
Q 000560 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 736 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1421)
+.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++..||++++|++|++.+.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999998777765 4555556799999999999988899999999999998775
No 327
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=341.07 Aligned_cols=207 Identities=29% Similarity=0.415 Sum_probs=174.5
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC------eeCCCCChH
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG------VDISMIGLQ 1279 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG------~dI~~i~l~ 1279 (1421)
..|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 4599999999999999999999999999999999999999986666554 677777777
Q ss_pred HHhcccEEEccCCccccc-cHhhhcCCC----CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1280 DLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1280 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
.+|++++|+||+|.+|.+ |+++|+... +...++ .+.++++..++.+.+.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999976 999999732 111222 34566777777543311 12234567999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||++||||++++|++++|||||++||..+...+.+.|++..+++|||++||+++.+. -||++++|++|+++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998777899999999999995 59999999999973
No 328
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-36 Score=331.70 Aligned_cols=200 Identities=31% Similarity=0.452 Sum_probs=171.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.+++++.+|+|+.. .+.+++ |+++++|+.++|+|+||||||||++.+.|.++|++|.+ .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 47899999999753 578999 99999999999999999999999999999999999997 6654
Q ss_pred -----EEEEEcCCCc--CCCCcHHHHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~~--i~~~Ti~enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
++|||+|+|. ++..||.|.+.||.. .. +++.+++++.|++.+.. .+...+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcc
Confidence 4899999995 678899999999954 22 24455667777765442 25678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
||||+||.+|..+|++++||||||+||+...+.+.+.+.+-... ++|+|++|||++.+.. ||++++|++|+++.+|++
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999988887654333334 6899999999999866 999999999999999999
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 88876
No 329
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.9e-36 Score=342.16 Aligned_cols=202 Identities=23% Similarity=0.362 Sum_probs=172.2
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC---ccEEEEcCeeCCCCC-----h
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIG-----L 1278 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~---~G~I~IDG~dI~~i~-----l 1278 (1421)
-++++||+++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 35999999999999999999999999999999999999986 499999999987542 3
Q ss_pred HHHhcccEEEccCCccccc-cHhhhcCCCC---------------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000560 1279 QDLRSRLSIIPQDPMLFQG-TVRTNLDPLE---------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342 (1421)
Q Consensus 1279 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~---------------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1342 (1421)
..+|++++|+||++.+|.+ |+++|+.... ...++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998874 9999996321 1123456778888877654322 23
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCe
Q 000560 1343 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGK 1419 (1421)
Q Consensus 1343 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~ 1419 (1421)
.+||+|||||++||||++.+|++|+|||||++||..+...+.+.|++.. .++|||+++|+++.+. -||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999864 3789999999999875 599999999998
Q ss_pred eC
Q 000560 1420 LK 1421 (1421)
Q Consensus 1420 Iv 1421 (1421)
++
T Consensus 231 i~ 232 (262)
T PRK09984 231 VF 232 (262)
T ss_pred EE
Confidence 73
No 330
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.2e-36 Score=340.84 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=169.1
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC----CccEEEEcCeeCCCCChHHHh
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR 1282 (1421)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEccCCc-ccc--ccHhhhcCC----CC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1283 SRLSIIPQDPM-LFQ--GTVRTNLDP----LE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1283 ~~i~iIpQdp~-LF~--gTIR~NLdp----~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+. ++.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 11 2345678888998887542 11223344679999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|+||||||||++||..+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999998643 7899999999999865 9999999999974
No 331
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-36 Score=332.39 Aligned_cols=197 Identities=23% Similarity=0.377 Sum_probs=166.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC----ChHHHhc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1283 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1283 (1421)
+++ ||+++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999753 24 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ccEEEccCCcccc-ccHhhhcCCC-CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1284 RLSIIPQDPMLFQ-GTVRTNLDPL-EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~-gTIR~NLdp~-~~~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
+++|+||++.+|. .|+++|+... ..+ .++++.+.++..++.+... ....+||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 9999999999986 4999999742 211 2345667777777754432 234579999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999988643 7899999999999864 9999999999974
No 332
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=352.16 Aligned_cols=207 Identities=20% Similarity=0.329 Sum_probs=172.0
Q ss_pred cEEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC----CCccEEEEcCeeCCCCChHH
Q 000560 1207 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1280 (1421)
-++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999953 22359999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEccCCcc--c-cccHhhhcCC-C------CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccC
Q 000560 1281 LR----SRLSIIPQDPML--F-QGTVRTNLDP-L------EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1340 (1421)
Q Consensus 1281 LR----~~i~iIpQdp~L--F-~gTIR~NLdp-~------~~------~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e 1340 (1421)
++ +++++|||+|.. + .-||.+|+.. . +. ..++++.++|++++|.+.-. -++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~----~~~~---- 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD----AMRS---- 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH----HHhC----
Confidence 53 479999999963 3 3488888741 1 10 11346778888888864211 1222
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1341 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1341 ~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
....||||||||++|||||+.+|+|||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2346999999999999999999999999999999999999999999998653 7899999999999965 999999999
Q ss_pred CeeC
Q 000560 1418 GKLK 1421 (1421)
Q Consensus 1418 G~Iv 1421 (1421)
|+|+
T Consensus 235 G~iv 238 (330)
T PRK15093 235 GQTV 238 (330)
T ss_pred CEEE
Confidence 9985
No 333
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.3e-36 Score=341.19 Aligned_cols=203 Identities=21% Similarity=0.356 Sum_probs=167.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCee-----CCCCChHH-
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1280 (1421)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcccEEEccCCc--cc-cccHhhhcCC----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000560 1281 ---LRSRLSIIPQDPM--LF-QGTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1281 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
.|+.++|+||+|. ++ ..|+++|+.. +.... ++++.++++..++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 33 3478888742 12111 223444555554421 22344556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||++|||||+++|+||+|||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 9999999999974
No 334
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.8e-36 Score=327.49 Aligned_cols=179 Identities=27% Similarity=0.392 Sum_probs=158.6
Q ss_pred cEEEEeeeeeeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCeeCCCCChHH
Q 000560 1207 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~--~p~~G~I~IDG~dI~~i~l~~ 1280 (1421)
.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1281 LRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1281 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
.|++++++||++.+|.+ |+++|+.... .. + .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 9999984210 00 0 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChh-hhh-ccCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~-ti~-~~DrIlvL~~G~Iv 1421 (1421)
+++|++++|||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+. -||+|++|++|+++
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999864 4789999999997 454 49999999999974
No 335
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.5e-36 Score=353.29 Aligned_cols=196 Identities=29% Similarity=0.361 Sum_probs=160.8
Q ss_pred cccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----------------EEEEEcCCCcCCC
Q 000560 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1421)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-----------------~iayv~Q~~~i~~ 672 (1421)
.+.++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457899 99999999999999999999999999999999999987 6654 4899999999986
Q ss_pred -CcHHHHhccCCCC---C-HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCC
Q 000560 673 -GTIRENILFGKDM---R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1421)
Q Consensus 673 -~Ti~enI~fg~~~---~-~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 747 (1421)
.||+|||.|+.++ + +++++++.+.+... ++ ....++++.+|||||||||+|||||+.+|+++|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-gL-------~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV-GL-------EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CC-------chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6999999987543 2 23334443333211 11 1234577889999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhhhhhhhhHHH
Q 000560 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1421)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 815 (1421)
|||||+.+++.+++.+..... .++|+|+||||++++. .||+|++|++|++++.|+++++..++..++.
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999887665433 4899999999999865 5999999999999999999998764444443
No 336
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.4e-36 Score=353.51 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=162.6
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe----eCCCCChHHHh----cccEEEccCCcc
Q 000560 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV----DISMIGLQDLR----SRLSIIPQDPML 1294 (1421)
Q Consensus 1223 ~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~----dI~~i~l~~LR----~~i~iIpQdp~L 1294 (1421)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+| ++++|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 67777655543 579999999999
Q ss_pred cc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1295 FQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1295 F~-gTIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
|+ .|+++|+... ...+ .+...++++.++|.++....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 6999999632 1122 235677888888876543332 359999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1367 VLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
+||||||+||+.+...+++.|++..+ ++|+|+|||+++.+. -||||++|++|+++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999988653 789999999999975 49999999999974
No 337
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=352.87 Aligned_cols=198 Identities=26% Similarity=0.417 Sum_probs=172.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCC----ChHHHhc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1283 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1283 (1421)
|++ |++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 899999642 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ccEEEccCCcccc-ccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1284 RLSIIPQDPMLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~-gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
+++|+||++.+|. .|+++|+... ....++++.++++.+++.+...+.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999996 5999999743 3345667888999988866554433 4699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~ 208 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999988653 6899999999998865 9999999999974
No 338
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.1e-35 Score=326.31 Aligned_cols=177 Identities=25% Similarity=0.351 Sum_probs=157.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCccEEEEcCeeCCCCChHHH-hcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDL-RSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl--~~p~~G~I~IDG~dI~~i~l~~L-R~~ 1284 (1421)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred cEEEccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999876 5655550 0 11369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh--ccCEEEEEeCCeeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI--DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~--~~DrIlvL~~G~Iv 1421 (1421)
+||+|||||++||..+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|+++
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999998864 3789999999999987 59999999999873
No 339
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-35 Score=348.39 Aligned_cols=205 Identities=24% Similarity=0.320 Sum_probs=166.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++++|+..+ ...+.|+| ||++++||+++|+||||||||||+++|.|+.+|++|++ .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996420 12468999 99999999999999999999999999999999999987 5554
Q ss_pred ------EEEEEcCCCcCC-CCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
+++|++|++.++ +.|++||+.++.. .+.+ +..++++..+|.+ ..+.++.+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 489999999887 5799999998643 2221 2223344333322 2335678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
||||+|||||+.+|+++|||||||+||+.+...+.+.+.+-..+ |.|+|++||+++.+.. ||+|++|++|+|++.|+.
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999998887644332233 8999999999999865 999999999999999999
Q ss_pred hhhhhhhh
Q 000560 804 EDLIADQN 811 (1421)
Q Consensus 804 ~~l~~~~~ 811 (1421)
+++..++.
T Consensus 226 ~~v~~~p~ 233 (343)
T TIGR02314 226 SEIFSHPK 233 (343)
T ss_pred HHHHcCCC
Confidence 99876433
No 340
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.7e-35 Score=325.25 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=168.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987643 568899999
Q ss_pred EccCCccc-cccHhhhcCCC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000560 1288 IPQDPMLF-QGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1365 (1421)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1365 (1421)
+||++.++ ..|+++|+... ....++++.++++..++.+.. ++.+ .+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------DRPV----AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCch----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999654 234677888899999987543 2333 46999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh-hccCEEEEE
Q 000560 1366 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV-IDNDLVLVL 1415 (1421)
Q Consensus 1366 LiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti-~~~DrIlvL 1415 (1421)
|||||||++||+.+...+.+.|++.. +++|+|++||+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998753 478999999987765 569999887
No 341
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-36 Score=325.96 Aligned_cols=178 Identities=24% Similarity=0.312 Sum_probs=157.3
Q ss_pred cEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCeeCCCCChHHHh
Q 000560 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR 1282 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR 1282 (1421)
.|+++|++++|++. .+++|+|+||++++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cccEEEccCCccccc-cHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1283 SRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1283 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998621 0000 699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh-h-hccCEEEEEeC-CeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE-GKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i-~~~DrIlvL~~-G~Iv 1421 (1421)
+|++|+|||||+++|.++...+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |+++
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 999999999999999999999999999864 47899999999984 4 56999999999 9974
No 342
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.2e-35 Score=328.09 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=177.0
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.++.|+.. ..+.++| ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 37899999999642 2468999 99999999999999999999999999999999999987 6665
Q ss_pred ----EEEEEcCCCcCCCCcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
.++|++|+++++..|++||+.++... .+++.++.++.+++.+.++..|.|..|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 37999999998888999999887543 4445667778888888788888888888888899999999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEec
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1421)
+..+|+++||||||++||+.+...+.+. +..+.+++|+|++||+++++..||++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988877764 55554458999999999988779999999999998654
No 343
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.9e-36 Score=321.27 Aligned_cols=174 Identities=32% Similarity=0.525 Sum_probs=158.4
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEE
Q 000560 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1421)
Q Consensus 1209 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1288 (1421)
+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000560 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1368 (1421)
Q Consensus 1289 pQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1368 (1421)
|| +++.+++.++... .+.+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765432 2357999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1369 DEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1369 DEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
||||++||.++...+.+.|++..+ ++|+|+++|+++.+. -||++++|++|+++
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999988654 789999999999985 49999999999974
No 344
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=6.4e-35 Score=376.06 Aligned_cols=95 Identities=24% Similarity=0.374 Sum_probs=83.2
Q ss_pred ccCCCCcCChHHHHHHHHHHHhccCC--CEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEE
Q 000560 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1421)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~ 791 (1421)
.+.+..+|||||||||+|||||.++| ++|+|||||++||++....+++.+.+...+|+|||+|+|+++++..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46778899999999999999999997 9999999999999999888877543333458999999999999888999999
Q ss_pred E------eCCEEEEecCchhhhh
Q 000560 792 M------KDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 792 l------~~G~i~~~g~~~~l~~ 808 (1421)
| ++|+|+.+|+++++..
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhc
Confidence 9 8999999998877643
No 345
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-36 Score=316.90 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=166.5
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..|+++|++-.|+.. ...|++ |++|++||+++|+|++||||||||++|.|..+|++|++ .++|
T Consensus 2 ~~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-Eecccchhccch
Confidence 358999999999743 678999 99999999999999999999999999999999999987 6655
Q ss_pred --------EEEEEcCCCcC-CCCcHHHHhccCCCCC------------HHHHHHHHH---HhccchhHHhhcCCCCcccc
Q 000560 660 --------KKAYVPQSSWI-QTGTIRENILFGKDMR------------QSFYEEVLE---GCALNQDIEMWADGDLSVVG 715 (1421)
Q Consensus 660 --------~iayv~Q~~~i-~~~Ti~enI~fg~~~~------------~~~y~~v~~---~c~l~~dl~~~~~gd~t~ig 715 (1421)
++||++|++-+ ...||.+|++.|+--. ++....+++ ..++.+. .-
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~ 142 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AY 142 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HH
Confidence 47999999876 5679999999886322 222222222 2222111 12
Q ss_pred CCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchh-ccCEEEEEe
Q 000560 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMK 793 (1421)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~D~i~~l~ 793 (1421)
.+..+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++.. +||||+-|+
T Consensus 143 qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 4678999999999999999999999999999999999999999998655433 35899999999999975 599999999
Q ss_pred CCEEEEecCchhhhh
Q 000560 794 DGKIEQSGKYEDLIA 808 (1421)
Q Consensus 794 ~G~i~~~g~~~~l~~ 808 (1421)
+|+|+++|+.+|+.+
T Consensus 223 ~G~ivfDg~~~el~~ 237 (258)
T COG3638 223 AGRIVFDGPASELTD 237 (258)
T ss_pred CCcEEEeCChhhhhH
Confidence 999999999998644
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.1e-36 Score=298.03 Aligned_cols=196 Identities=27% Similarity=0.441 Sum_probs=172.6
Q ss_pred eeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCcc
Q 000560 1215 VQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294 (1421)
Q Consensus 1215 ~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1294 (1421)
.+|.....++|+++||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|+++.+++.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHhhhcC-CC---CC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1295 FQGTVRTNLD-PL---EQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1295 F~gTIR~NLd-p~---~~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
|.+||.+||- |+ ++ .+...-.+-|+++++.+.+ |+ .+..+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~------L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI------LT----KNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhh------hc----chhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999986 43 22 2334455667777776554 33 344579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhh-hhccCEEEEEeCCee
Q 000560 1370 EATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT-VIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~t-i~~~DrIlvL~~G~I 1420 (1421)
|+||+||..+.+.|.+.|..++ ++..++.|||+.+. +..+||++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999998877 56899999999987 788999999998864
No 347
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-35 Score=314.97 Aligned_cols=212 Identities=25% Similarity=0.370 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.++.|+... ...+.+++ +|++.+||.++|+|++|||||||.++|+|..+|++|+| .++|
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 578999999998651 11268999 99999999999999999999999999999999999997 7766
Q ss_pred -----EEEEEcCCCcC---CCCcHHHHhccCCCC-----CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 -----KKAYVPQSSWI---QTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 -----~iayv~Q~~~i---~~~Ti~enI~fg~~~-----~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.+-+|+|+|.- +..||++-|.-+... .+++..++++..+|.+.. ...++.+|||||+
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHH
Confidence 36899999863 456998887644322 234455566666665433 3367889999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCch
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1421)
|||||||||..+|+++|||||||+||+.++..|++.+.+.. .++-|.|+||||+..+.+ ||||+||++|+|++.++.+
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999987544322 246799999999999987 9999999999999999999
Q ss_pred hhhhhhhhHHHH
Q 000560 805 DLIADQNSELVR 816 (1421)
Q Consensus 805 ~l~~~~~~~~~~ 816 (1421)
++......++.+
T Consensus 228 ~l~~~~~h~ytr 239 (252)
T COG1124 228 ELLSHPSHPYTR 239 (252)
T ss_pred hhhcCCccHHHH
Confidence 987643334433
No 348
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.6e-35 Score=338.02 Aligned_cols=205 Identities=23% Similarity=0.383 Sum_probs=169.7
Q ss_pred cEEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH
Q 000560 1207 KIELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1279 (1421)
.|+++||+++|+.+ .+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 24699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcccEEEccCCc--cc-cccHhhhcCC-C---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1280 ---DLRSRLSIIPQDPM--LF-QGTVRTNLDP-L---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1280 ---~LR~~i~iIpQdp~--LF-~gTIR~NLdp-~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
.+|++++|+||+|. ++ ..|+++|+.. . ...+ ++.+.+.++..++.. .........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 46889999999983 43 4699999742 1 1111 123445555554421 1223345679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|+|||||++|||||+++|++|||||||++||..+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 99999999999999999999999999999999999999999987643 7899999999999975 9999999999974
No 349
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-35 Score=324.25 Aligned_cols=194 Identities=25% Similarity=0.396 Sum_probs=168.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 35999999999999999999999999999999999999999999999999997654 457788999
Q ss_pred EccCCcccc-ccHhhhcCCCC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccC
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1362 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~----~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1362 (1421)
+||++.++. .|+++|+.... ...++++.++++..++.++. |.++ ..||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-------DVPV----RQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-------hCCh----hhcCHHHHHHHHHHHHHhcC
Confidence 999998876 59999996421 13456788899999987654 2232 46999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEE
Q 000560 1363 KRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVL 1415 (1421)
Q Consensus 1363 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL 1415 (1421)
|++|+|||||++||+++...+.+.|++.. +++|+|+++|+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998763 47899999999999954 5688777
No 350
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.1e-35 Score=351.02 Aligned_cols=195 Identities=26% Similarity=0.407 Sum_probs=166.5
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCC----hHHHhcccEE
Q 000560 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQDLRSRLSI 1287 (1421)
Q Consensus 1212 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~----l~~LR~~i~i 1287 (1421)
|++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 789999642 35 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EccCCccccc-cHhhhcCCC-CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1288 IPQDPMLFQG-TVRTNLDPL-EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1288 IpQdp~LF~g-TIR~NLdp~-~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
+||+|.+|.+ |+++|+... .... ++++.+.++..++.+...+. ..+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 999999742 1111 23467778887776544332 34699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999998643 7899999999999865 9999999999974
No 351
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=346.53 Aligned_cols=204 Identities=27% Similarity=0.364 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|.. .+.+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999997 6665
Q ss_pred --EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++||+|++.++ +.||+|||.|+... .+ ++.+++++..++.. ..+.++.+|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHH
Confidence 479999999887 56999999998532 22 22233333333321 22456789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 806 (1421)
+|||||+.+|+++|||||||+||+.....+.+.+ ..+. .++|+|+||||.+++. .||+|++|++|+|.+.|+++++
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKI-RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999988887644 4443 2799999999999875 5999999999999999999998
Q ss_pred hhhhhhHH
Q 000560 807 IADQNSEL 814 (1421)
Q Consensus 807 ~~~~~~~~ 814 (1421)
...+...+
T Consensus 225 ~~~p~~~~ 232 (351)
T PRK11432 225 YRQPASRF 232 (351)
T ss_pred HhCCCchH
Confidence 76444333
No 352
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-35 Score=342.62 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=167.3
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
+..++++|.+|+|+.... ...+.|+| ||++++||+++|+|+||||||||+++|+|+++|++|+| .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE---NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 457999999999974300 12468999 99999999999999999999999999999999999987 5542
Q ss_pred ----------------------EEEEEcCCC--cCCCCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcC
Q 000560 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1421)
Q Consensus 660 ----------------------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~ 708 (1421)
.++||+|+| .+++.||+|||.|+.. .+.+ +.++.++.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------- 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------- 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 379999998 6788899999998742 2222 2222333333321
Q ss_pred CCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchh-ccC
Q 000560 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AAD 787 (1421)
Q Consensus 709 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~D 787 (1421)
...++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+..-..+|+|+|+|||+++++. .||
T Consensus 168 ---~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 168 ---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 1245778899999999999999999999999999999999999988887644332235899999999999875 599
Q ss_pred EEEEEeCCEEEEecCchhhhh
Q 000560 788 LVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 788 ~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+|++|++|++++.|+++++..
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999998875
No 353
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=337.47 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=166.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHh-ccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1285 (1421)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 58999999999633 359999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEccCCcc---ccccHhhhcCCC--------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000560 1286 SIIPQDPML---FQGTVRTNLDPL--------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1286 ~iIpQdp~L---F~gTIR~NLdp~--------~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1351 (1421)
+|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. |+.+ .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHH
Confidence 999999865 456889987521 0 11234567788888886543 3444 359999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 rl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|++|||||+++|+||+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+. -||+++++ +|+++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 9999999999999999999999999999999999998864 4789999999999885 49999777 89873
No 354
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-35 Score=331.05 Aligned_cols=198 Identities=28% Similarity=0.363 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.++| ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 467899999853 368999 99999999999999999999999999999999999987 5544
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC----CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~----~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++|++|++.++. .|++||+.++.. .+.+ +.+++++.+++.. ....+..+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 3799999998776 599999988632 1221 2233344443321 123566799999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecC
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1421)
||||++||||++.+|+++||||||++||+.+...+.+.+..... .++|+|++||+++++.. ||+|++|++|++.+.|+
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999998887764433223 37999999999998765 99999999999999999
Q ss_pred chhhhh
Q 000560 803 YEDLIA 808 (1421)
Q Consensus 803 ~~~l~~ 808 (1421)
++++..
T Consensus 221 ~~~~~~ 226 (235)
T cd03261 221 PEELRA 226 (235)
T ss_pred HHHHcC
Confidence 887754
No 355
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.3e-35 Score=332.37 Aligned_cols=189 Identities=29% Similarity=0.461 Sum_probs=165.8
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999987 34799
Q ss_pred EEccCCcccc---ccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1287 IIPQDPMLFQ---GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1287 iIpQdp~LF~---gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
|+||+|.++. .|+++|+......+++++.++++.+++.+.... + ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-------P----MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-------C----hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 389999754334567889999999998766533 2 2469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCee
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKL 1420 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~I 1420 (1421)
++|+|||||++||..+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++ ++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i 198 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HI 198 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ce
Confidence 99999999999999999999999987643 7899999999999865 999999975 44
No 356
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=312.50 Aligned_cols=203 Identities=27% Similarity=0.446 Sum_probs=172.3
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1421)
-++++|++..|.+ -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||...+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999976 35999999999999999999999999999999999999999999999999999999987 68889
Q ss_pred EEEccCCccccc-cHhhhcCCCCC-CCH-----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-HSD-----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1358 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~sd-----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1358 (1421)
++|||...+|.. ||.|||..... ..+ ..+.++.+. .|. |.......+.+|||||+|-++||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP~-Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FPR-LKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Chh-HHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999966 99999974321 111 112222221 221 3333445567899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1359 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1359 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
|+.+||+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++..... -+||.+||++|+|+
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 9999999999999999999999999999998764 569999999999875 59999999999985
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.2e-35 Score=310.16 Aligned_cols=158 Identities=32% Similarity=0.547 Sum_probs=146.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChH-HHhcccE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLS 1286 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~i~ 1286 (1421)
|+++|++++|+.. ++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999643 599999999999999999999999999999999999999999999999999888764 4678899
Q ss_pred EEccCCccccccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000560 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1366 (1421)
Q Consensus 1287 iIpQdp~LF~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1366 (1421)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1367 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1367 iLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|+++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999998864 47899999999998865 9999999999974
No 358
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.3e-35 Score=346.56 Aligned_cols=205 Identities=29% Similarity=0.351 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999997 6765
Q ss_pred --EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++||+|++-++ +.||+|||.|+... +. ++.+++++..+|.. ....++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHH
Confidence 379999999887 57999999997432 22 23344444444332 23467789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
+|||||+.+|+++|||||||+||+....++.+.+.+-.. .+.|+|+||||.+++. .||+|++|++|++.+.|+++++.
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999998888765443333 3799999999999875 49999999999999999999998
Q ss_pred hhhhhHH
Q 000560 808 ADQNSEL 814 (1421)
Q Consensus 808 ~~~~~~~ 814 (1421)
+++...+
T Consensus 224 ~~p~~~~ 230 (353)
T TIGR03265 224 RHPATPF 230 (353)
T ss_pred hCCCCHH
Confidence 7544343
No 359
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.6e-35 Score=333.63 Aligned_cols=204 Identities=23% Similarity=0.290 Sum_probs=170.6
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCccEEEEcCeeCCCCChHHHhc-
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDLRS- 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl--~~p~~G~I~IDG~dI~~i~l~~LR~- 1283 (1421)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEccCCccccc-cHhhhcCCC-C---------CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000560 1284 RLSIIPQDPMLFQG-TVRTNLDPL-E---------QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1348 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~-~---------~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1348 (1421)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++|+.+++.+. .++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCHH
Confidence 58999999999986 789987531 1 001 1335566777766421 1233332 249999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc--cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~--~DrIlvL~~G~Iv 1421 (1421)
||||++|||||+++|+||||||||++||..+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|+++
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999998864 47999999999999875 8999999999974
No 360
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.4e-35 Score=332.62 Aligned_cols=203 Identities=19% Similarity=0.325 Sum_probs=167.2
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCee-----CCCCChHH-
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1280 (1421)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77766543
Q ss_pred ---HhcccEEEccCCc--c-ccccHhhhcCC----CCC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000560 1281 ---LRSRLSIIPQDPM--L-FQGTVRTNLDP----LEQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1281 ---LR~~i~iIpQdp~--L-F~gTIR~NLdp----~~~----~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
.|+.++++||+|. + +..|+.+|+.. ... ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 34578888631 111 12344555555555531 22333456799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||++|||||+++|++|+|||||++||+.+...+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|+++
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998764 37899999999999975 9999999999974
No 361
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=303.97 Aligned_cols=201 Identities=28% Similarity=0.428 Sum_probs=174.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
+++.+++.+|.+- ..+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+..- +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6789999999762 3489999999999999999999999999999999999999999999999999884 5678999999
Q ss_pred EccCCcccc-ccHhhhcCCCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHh
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
++-+.-++. -|+||||.+++ +.++. ++.+.-+..++.++. |..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHHH
Confidence 997666664 49999998753 33333 455555566666654 45555 4999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1360 LKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1360 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
.++|+|+|||||||+||..|.+.+++.|++... +++||.-+|-++.+. -||||+++.+|+++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 999999999999999999999999999998764 899999999999997 69999999999975
No 362
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=327.94 Aligned_cols=197 Identities=32% Similarity=0.439 Sum_probs=161.7
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 368999 99999999999999999999999999999999999987 5654
Q ss_pred -EEEEEcCCCcCCC-CcHHHHhccCCCC-------CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 -~iayv~Q~~~i~~-~Ti~enI~fg~~~-------~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+|.++. .|++||+.++... +.. +.++.++.+++. .....+..+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHH
Confidence 4799999998774 6999999986432 111 122233333332 123456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
||++||||++.+|+++||||||++||+++.+.+.+ ++..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99999999999999999999999999998887766 444443 3 7899999999998765 999999999999999998
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++.+
T Consensus 222 ~~~~~ 226 (239)
T cd03296 222 DEVYD 226 (239)
T ss_pred HHHhc
Confidence 88764
No 363
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.4e-35 Score=330.08 Aligned_cols=188 Identities=28% Similarity=0.414 Sum_probs=157.3
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEc-cCCccc-cccH
Q 000560 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLF-QGTV 1299 (1421)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp-Qdp~LF-~gTI 1299 (1421)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987653 346788999998 667676 5699
Q ss_pred hhhcCCC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccC
Q 000560 1300 RTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1372 (1421)
Q Consensus 1300 R~NLdp~---~~~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaT 1372 (1421)
++|+... ...+++ ++.++++..++.+. +|+.+ ..||+|||||++|||||+.+|++|+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122333 34455666665433 34444 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1373 ASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1373 sslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++||+++.+.+.+.|++.. .++|||+++|+++.+.. ||+|++|++|+++
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999864 37899999999998865 9999999999974
No 364
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1e-34 Score=344.83 Aligned_cols=203 Identities=27% Similarity=0.352 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|.. .+.+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45899999999963 357899 99999999999999999999999999999999999997 6665
Q ss_pred ---EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ---~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
.++||+|++.++ ..||+|||.|+... .. ++.+++++..++... ...+..+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 379999999876 56999999998542 21 223334444444322 235678999999999
Q ss_pred HHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhh
Q 000560 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 729 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 806 (1421)
|+|||||+.+|+++|||||||+||++....+.+.+..-.. .+.|+|+||||.+++. .||+|++|++|+|.+.|+++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999998887665433222 3899999999999865 5999999999999999999998
Q ss_pred hhhhh
Q 000560 807 IADQN 811 (1421)
Q Consensus 807 ~~~~~ 811 (1421)
..++.
T Consensus 233 ~~~p~ 237 (375)
T PRK09452 233 YEEPK 237 (375)
T ss_pred HhCcc
Confidence 76443
No 365
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-35 Score=337.17 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=166.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++|+|+.... ...+.++| ||+|++||+++|+||||||||||+++|.|+++|++|++ .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 689999999974300 01358999 99999999999999999999999999999999999987 6654
Q ss_pred -------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 -------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.++||+|+| .++..|+.||+.|+.. ... +++++.++..++..++ .++.+.+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCH
Confidence 369999998 6778899999998753 121 2344455555543221 2366789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchh-ccCEEEEEeCCEEEEec
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1421)
|||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+ .+|+|||++||+++++. .||+|++|++|+++++|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999998888776 44443 35899999999999886 49999999999999999
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9998865
No 366
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-34 Score=323.26 Aligned_cols=197 Identities=40% Similarity=0.746 Sum_probs=173.4
Q ss_pred EEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----------
Q 000560 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1421)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g----------- 659 (1421)
.+.|+.|+|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 567899999753 468999 99999999999999999999999999999999999986 4432
Q ss_pred ------EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHH
Q 000560 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LAR 733 (1421)
.++|++|+|.+++.|++||+.++.+.+.++.+++++++++.+.++..|.|+.+.++.+..+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 48999999998888999999988766666667888888888888888889989889999999999999999999
Q ss_pred HhccCCCEEEeeCCCCCCCHhHHHHHHHH-HHhhhc-CCcEEEEEcCCccchhccCEEEEEeCCE
Q 000560 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1421)
Q Consensus 734 Al~~~~~illLDep~saLD~~~~~~i~~~-~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~ 796 (1421)
|++.+|+++||||||++||+.+...+.+. +++... .++|+|++||+.+++..||++++|++|.
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999988877763 444433 4799999999999988899999999884
No 367
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.3e-35 Score=320.08 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=165.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999875 34567899999
Q ss_pred EccCCccc-cccHhhhcCCC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1288 IPQDPMLF-QGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
+||++.++ ..|+++|+... ....++++.++++..++.+. .|.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 57999998632 11234456777777766432 23333 3599999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhccCEEEE
Q 000560 1365 ILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLV 1414 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIlv 1414 (1421)
+|+|||||++||..+...+.+.|++. .+++|+|++||+...+.+||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999985 357899999999999998986543
No 368
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-35 Score=337.07 Aligned_cols=205 Identities=25% Similarity=0.376 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.... ...+.|++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974300 01468999 99999999999999999999999999999999999987 5544
Q ss_pred ------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 ------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.. .+..+.++.+||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHH
Confidence 479999998 4678899999998642 222 22344455555430 11234677899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEec
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1421)
||||++|||||+.+|+++||||||++||+.+...+.+ ++..+. .|+|||++||+++++. .||+|++|++|++.+.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999888876 454443 3899999999999875 59999999999999999
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 9988765
No 369
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-35 Score=337.28 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.... ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999964300 12468999 99999999999999999999999999999999999987 5655
Q ss_pred -------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 -------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.++||+|+| .+++.||+|||.|+.. .+. ++.+++++.++|..++ .+.++.+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCH
Confidence 379999998 5677899999998742 222 2345555556554322 1356789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
|||||++||||++.+|+++||||||++||+.+...+.+. ++.+ . .|.|||++|||++++.. ||+|++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999998887764 4444 3 38999999999999765 999999999999999
Q ss_pred cCchhhhh
Q 000560 801 GKYEDLIA 808 (1421)
Q Consensus 801 g~~~~l~~ 808 (1421)
|+++++.+
T Consensus 228 g~~~~~~~ 235 (290)
T PRK13634 228 GTPREIFA 235 (290)
T ss_pred CCHHHHhc
Confidence 99888765
No 370
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=321.55 Aligned_cols=200 Identities=25% Similarity=0.383 Sum_probs=173.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCe---eCCCCChHHHhc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV---DISMIGLQDLRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~---dI~~i~l~~LR~ 1283 (1421)
.|+++|++.+|+.- .+++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.++. +.-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 37888898888643 5899999999999999999999999999999999999999999999999 77773 33446
Q ss_pred ccEEEccCCccccc-cHhhhcCCCC---------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1284 RLSIIPQDPMLFQG-TVRTNLDPLE---------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~~---------~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
+||+|.||.-||.- ||++|+.+.- ...+..+.+.|+.|+|...-.+.| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 89999999999865 9999997542 123445677788899887766655 36999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
+|||||...|++|+||||.++||..-.+.+++-+++.. -++|++.|||+.+.+. -||||+||++|+|.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 99999999999999999999999999999999998754 3789999999999875 49999999999974
No 371
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.50 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=167.4
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.++++|++++|++ +.+++++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999998752 4466799
Q ss_pred EEccCCccccc-cHhhhcCCC----CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1287 IIPQDPMLFQG-TVRTNLDPL----EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1287 iIpQdp~LF~g-TIR~NLdp~----~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
|+||+|.+|.+ |+++|+... +...++.+.++++..++.+. ++..+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999887 999998532 22234456677777776433 34444 4699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDE 1417 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1417 (1421)
+|++|+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998753 46899999999999865 899999975
No 372
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.1e-35 Score=327.08 Aligned_cols=181 Identities=29% Similarity=0.412 Sum_probs=155.1
Q ss_pred eeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEEEccCCcccc-ccHhhhc
Q 000560 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNL 1303 (1421)
Q Consensus 1225 L~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1303 (1421)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCC
Q 000560 1304 DPL-----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1374 (1421)
Q Consensus 1304 dp~-----~~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTss 1374 (1421)
... ...++ +++.+.++.+++.+.. +..+ ..||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-------DKRP----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-------cCCh----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 22332 2356777777776543 2333 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1375 IDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1375 lD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 99999999999998764 37899999999999865 9999999999974
No 373
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.5e-35 Score=343.97 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=168.2
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCC--CcEEEECC------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~--G~vi~~~g------ 659 (1421)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++ |++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 46899999999963 357999 99999999999999999999999999999999999 987 6665
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++||+|++.++ ..||+|||.|+... .. ++.+++++..+|.+. .+.+..+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHH
Confidence 379999999887 56999999987432 21 233444444444322 2356789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
|||+|||||..+|+++|||||||+||+.....+.+.+.+-..+ |.|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988887654433333 7899999999998755 999999999999999999
Q ss_pred hhhhhhhh
Q 000560 804 EDLIADQN 811 (1421)
Q Consensus 804 ~~l~~~~~ 811 (1421)
+++...+.
T Consensus 224 ~~~~~~p~ 231 (362)
T TIGR03258 224 QALYDAPA 231 (362)
T ss_pred HHHHhCcC
Confidence 99987443
No 374
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=345.68 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 4789999999963 357899 99999999999999999999999999999999999987 6655
Q ss_pred --EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.++ ..|++|||.|+... .. ++.+++++.+++.. ..+.+..+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHH
Confidence 389999999886 46999999987432 21 23344455554432 22356779999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
+|||||+.+|+++|||||||+||+...+.+.+.+.+-..+ ++|+|+||||++++.. ||+|++|++|++.+.|+++++.
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988877644332233 7999999999998765 9999999999999999999987
Q ss_pred hhhh
Q 000560 808 ADQN 811 (1421)
Q Consensus 808 ~~~~ 811 (1421)
..+.
T Consensus 223 ~~p~ 226 (369)
T PRK11000 223 HYPA 226 (369)
T ss_pred hCcc
Confidence 6433
No 375
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-34 Score=327.39 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=160.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 367899999863 358999 99999999999999999999999999999999999987 5554
Q ss_pred ----EEEEEcCCCcCCC-CcHHHHhccCCCCC-------------HH----HHHHHHHHhccchhHHhhcCCCCccccCC
Q 000560 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR-------------QS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~-~Ti~enI~fg~~~~-------------~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~ 717 (1421)
.++|++|++.++. .|++||+.++.... .. +.++.++..++ ....+.+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCC
Confidence 3799999988765 59999998764211 11 12222222222 1234567
Q ss_pred CCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCE
Q 000560 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1421)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1421)
..+||||||||++||||++.+|++++|||||++||+.+...+.+.+.....+++|+|++||+++++.. ||+|++|++|+
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 88999999999999999999999999999999999999888876443322368999999999999865 99999999999
Q ss_pred EEEecCchhhhh
Q 000560 797 IEQSGKYEDLIA 808 (1421)
Q Consensus 797 i~~~g~~~~l~~ 808 (1421)
+.+.|+++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999998877654
No 376
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=341.64 Aligned_cols=202 Identities=33% Similarity=0.436 Sum_probs=165.7
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3788999999863 358999 99999999999999999999999999999999999987 6655
Q ss_pred --EEEEEcCCCcCCC-CcHHHHhccCCCC-------CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 --~iayv~Q~~~i~~-~Ti~enI~fg~~~-------~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++||+|++.++. .|++|||.|+... +. ++.++.++..++.. ....+..+|||||
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq 141 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQ 141 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 4899999998875 6999999997532 11 12233344443321 2235678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
||||+|||||+.+|+++|||||||+||++....+.+.+.+-..+ ++|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999988887644332223 7899999999998765 999999999999999999
Q ss_pred hhhhhhhh
Q 000560 804 EDLIADQN 811 (1421)
Q Consensus 804 ~~l~~~~~ 811 (1421)
+++..++.
T Consensus 222 ~~i~~~p~ 229 (353)
T PRK10851 222 DQVWREPA 229 (353)
T ss_pred HHHHhCcc
Confidence 99876443
No 377
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-34 Score=318.99 Aligned_cols=193 Identities=26% Similarity=0.362 Sum_probs=167.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 2 28889999
Q ss_pred EccCCccc-cccHhhhcCCC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1288 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1288 IpQdp~LF-~gTIR~NLdp~---~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+||++.++ ..|+++|+... ....++++.++++..++.+.. +.++ .+||+|||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-------HLPF----GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-------cCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 67999998642 223466788999999987643 2222 369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhccCEEEEEeC
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLVLDE 1417 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1417 (1421)
++|+|||||++||..+...+.+.|++. .+++|+|+++|+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999874 357899999999999887 99988753
No 378
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-34 Score=324.50 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=163.8
Q ss_pred EEEEeeeeeeCC----C-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc--C--eeCCCCCh
Q 000560 1208 IELENLLVQYNP----T-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID--G--VDISMIGL 1278 (1421)
Q Consensus 1208 I~~~nvs~~Y~~----~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ID--G--~dI~~i~l 1278 (1421)
|+++|++++|+. + .+.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hcccEEEccCCccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000560 1279 QD---L-RSRLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346 (1421)
Q Consensus 1279 ~~---L-R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1346 (1421)
.+ + +++++|+||+|.+|.. |+++|+... .... ++++.++++..++.+... +. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL----PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC----CcccCC
Confidence 54 3 4579999999988865 999998631 1121 345666777776644221 22 245799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEE
Q 000560 1347 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVL 1415 (1421)
Q Consensus 1347 gGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL 1415 (1421)
+|||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+. -||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999864 4789999999999886 59999876
No 379
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-34 Score=325.03 Aligned_cols=194 Identities=28% Similarity=0.409 Sum_probs=158.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCc-----cCCCCcEEEECC-----
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~vi~~~g----- 659 (1421)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.. +|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468899999853 368999 9999999999999999999999999999999 8999987 5544
Q ss_pred ----------EEEEEcCCCcCCCCcHHHHhccCCCC----C----HHHHHHHHHHhccchhHHhhcCCCCccccCC--CC
Q 000560 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER--GI 719 (1421)
Q Consensus 660 ----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~--g~ 719 (1421)
.++|++|++.+++.|++||+.++... . +++.+++++.+++.+.. ..+ +.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~ 140 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHAL 140 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcc
Confidence 37999999988888999999886421 1 12223344444443221 123 57
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++.+|+++||||||++||+.+.+.+++. +....+++|+|++||+++++.. ||+|++|++|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999988888764 4444334899999999998765 9999999999999
Q ss_pred EecCchh
Q 000560 799 QSGKYED 805 (1421)
Q Consensus 799 ~~g~~~~ 805 (1421)
+.|+.++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9988765
No 380
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1e-34 Score=330.12 Aligned_cols=202 Identities=20% Similarity=0.293 Sum_probs=160.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCeeCCCCChHHHh-cc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR-SR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR-~~ 1284 (1421)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 35999999999999999999999999999999999995 69999999999999887776654 57
Q ss_pred cEEEccCCccccc-cHhhhcC-------CCCCC---C----HHHHHHHHHHcCcHHHHHhccccc-CccccCCCCCCChh
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLD-------PLEQH---S----DQEIWEVINKCHLAEIVRQDQRLL-DAPVAEDGENWSVG 1348 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLd-------p~~~~---s----deeI~~aL~~~~L~~~i~~lp~gL-dt~v~e~G~nLSgG 1348 (1421)
++++||+|.++.. |..+++. ..... . ++.+.+.++..++ |+++ +..+ ..+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~---~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV---NVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC---CCCCCHH
Confidence 9999999987754 4444332 11100 1 1112223333322 2222 2222 1369999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhc--cCEEEEEeCCeeC
Q 000560 1349 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID--NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1349 QrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHRl~ti~~--~DrIlvL~~G~Iv 1421 (1421)
||||++||||++++|+||+|||||++||.++...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999987643 6899999999999876 8999999999974
No 381
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=324.31 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++++. .+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999853 358999 99999999999999999999999999999999999987 5654
Q ss_pred ----EEEEEcCCCcCCCCcHHHHhccCCCCC---HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHH
Q 000560 660 ----KKAYVPQSSWIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~Ti~enI~fg~~~~---~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1421)
.++|++|++.++..|++||+.++.... .++.++.++.+++..+. ..+.+.+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHH
Confidence 379999999888889999998864322 23344555555553221 2356779999999999999
Q ss_pred HHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhh
Q 000560 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 733 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
||++.+|+++||||||++||+.+.+.+.+ ++... . .|+|+|++||+++++.. ||+|++|++|++++.|+.+++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999998777765 44443 3 38999999999999875 99999999999999999888765
No 382
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=321.66 Aligned_cols=190 Identities=32% Similarity=0.434 Sum_probs=155.1
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 467899999863 368999 99999999999999999999999999999999999987 6654
Q ss_pred -EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 -~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
.++|++|++.++ +.|++||+.++... +. ++.++.++.+++.. ..+....+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-----------LLNRYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 479999998776 46999999876321 21 22334444444432 233566799999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||||+..+|+++||||||++||+.+...+.+. +..+ . .++|+|++||+++++.. ||+|++|++|++.+.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998887764 4443 3 38999999999998765 9999999999998765
No 383
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=332.90 Aligned_cols=201 Identities=28% Similarity=0.427 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.. ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48899999999743 22458999 99999999999999999999999999999999999987 6655
Q ss_pred ----EEEEEcCCCc--CCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+|. ++..||+|||.|+.. .++ ++.+++++..++... ......+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF-----------KEREPARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHH
Confidence 3699999984 567799999998743 222 233445555555322 2355679999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||++||||++.+|+++||||||++||+.+.+.+++ ++..+. + |+|+|++||+++.+..||+|++|++|+++..|+.+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998887765 444443 3 89999999999988779999999999999999988
Q ss_pred hhhh
Q 000560 805 DLIA 808 (1421)
Q Consensus 805 ~l~~ 808 (1421)
++..
T Consensus 226 ~~~~ 229 (279)
T PRK13650 226 ELFS 229 (279)
T ss_pred HHHc
Confidence 8765
No 384
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.7e-34 Score=316.74 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=165.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998765 457789999
Q ss_pred EccCCcccc-ccHhhhcCCCC---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCC
Q 000560 1288 IPQDPMLFQ-GTVRTNLDPLE---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1363 (1421)
Q Consensus 1288 IpQdp~LF~-gTIR~NLdp~~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1363 (1421)
+||++.+|. .|+++|+.... ...++++.++++..++.+.. +..+ .+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------DLPA----AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-------cCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 69999985321 11244688899999987654 2333 469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhccCEEEEE
Q 000560 1364 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLVL 1415 (1421)
Q Consensus 1364 ~ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIlvL 1415 (1421)
++|+|||||++||..+...+.+.|++. .++.|+|+++|+... ..||+++.+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~~~~~ 198 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-LVEARELRL 198 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-ccceEEeeC
Confidence 999999999999999999999999875 357899999999754 456887653
No 385
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.2e-34 Score=327.02 Aligned_cols=202 Identities=27% Similarity=0.393 Sum_probs=164.9
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCC-----CCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|.++|+ +|++ .++|
T Consensus 1 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGE--------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECC--------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEcc
Confidence 3688999999963 257899 9999999999999999999999999999999988 9986 5543
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|+++++..|++||+.++... .. ++.+++++..++..+++ ...+.++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 144 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALG 144 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCccc
Confidence 37999999998889999999875321 11 22333444444432221 123467789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998887765 55555456899999999998865 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 224 ~~~~~~~~~ 232 (247)
T TIGR00972 224 YGPTEQIFT 232 (247)
T ss_pred eCCHHHHHh
Confidence 999888765
No 386
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.4e-34 Score=328.18 Aligned_cols=196 Identities=23% Similarity=0.333 Sum_probs=165.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 356788875 279999999999999999999999999999999999864 9999999999998888888889999
Q ss_pred EccCCc-cccccHhhhcCCCCC-C-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhc
Q 000560 1288 IPQDPM-LFQGTVRTNLDPLEQ-H-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1360 (1421)
Q Consensus 1288 IpQdp~-LF~gTIR~NLdp~~~-~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1360 (1421)
+||+|. .+..|+++|+..... . + ++++.++++..++.+.. +. ....||+|||||++|||||+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-------GR----SVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-------cC----CcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999975321 1 1 23566777777775433 22 23469999999999999999
Q ss_pred c-------CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh-ccCEEEEEeCCeeC
Q 000560 1361 K-------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1361 r-------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL~~G~Iv 1421 (1421)
+ +|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+. -||+|++|++|+++
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 7 679999999999999999999999998864 4789999999999775 49999999999974
No 387
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=335.34 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=164.3
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++++|+.... ...+.+++ ||+|++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 3 i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~~ 78 (305)
T PRK13651 3 IKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceecccccccc
Confidence 789999999974300 11368999 99999999999999999999999999999999999987 4431
Q ss_pred ---------------------------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhH
Q 000560 660 ---------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDI 703 (1421)
Q Consensus 660 ---------------------------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl 703 (1421)
.++||+|+| -++..||+|||.|+.. .++ ++.+++++.++|..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~- 157 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES- 157 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh-
Confidence 369999987 4677899999998742 222 223444444444321
Q ss_pred HhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccc
Q 000560 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF 782 (1421)
Q Consensus 704 ~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~ 782 (1421)
..+.+..+||||||||++||||++.+|+++||||||++||+.....+.+. +..+ ..|+|||++|||+++
T Consensus 158 ---------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 158 ---------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHH
Confidence 13367789999999999999999999999999999999999988777664 4443 358999999999998
Q ss_pred hh-ccCEEEEEeCCEEEEecCchhhhh
Q 000560 783 LD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 783 l~-~~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+. .||+|++|++|++++.|+.+++..
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 75 599999999999999999988865
No 388
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=327.94 Aligned_cols=203 Identities=24% Similarity=0.360 Sum_probs=165.3
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g--- 659 (1421)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999864 578986 5543
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCCC----C----HHHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~~----~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++..|++||+.++... . +++.++.++.+++.+.+. +..++.+.
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 48999999988878999999876321 1 122334444444432221 12356788
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++.+|+++||||||++||+++...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998877765 45555557999999999999865 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++.+
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999888765
No 389
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.2e-34 Score=322.47 Aligned_cols=188 Identities=24% Similarity=0.398 Sum_probs=153.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6789999999642 2368999 99999999999999999999999999999999999987 6654
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++. .|++||+.++.. .. +++.+++++.+++... ......+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 3799999998764 699999987532 11 1233444555544322 234567999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..+ .+++|+|++||+++++.. ||+|++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999998888764 4443 358999999999999875 999999999975
No 390
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=322.37 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=159.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 468899998853 358999 99999999999999999999999999999999999987 5655
Q ss_pred --EEEEEcCCCcCCC-CcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.++. .|++||+.++.. .+. ++.++.++.+++... ...+..+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHH
Confidence 4799999987765 599999987522 111 223444454444321 2345679999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1421)
+||||++.+|+++||||||++||+++.+.+.+.+.....+ ++|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999988777644333333 7899999999999875 999999999999998877653
No 391
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=325.56 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=167.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc---CCCCcEEEECC------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~vi~~~g------ 659 (1421)
.|+++|+++.|+. .+.++| ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4788999999963 368999 99999999999999999999999999999974 689987 6655
Q ss_pred -------EEEEEcCCCcCCCCcHHHHhccCCCC---------CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 -------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 -------~iayv~Q~~~i~~~Ti~enI~fg~~~---------~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.++|++|++.++..|++||+.++... .+++.++.++.+++...+.. ...+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 37999999999889999999876321 11233455666666443322 23457789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecC
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1421)
|||||++||||++++|+++||||||++||+++...+.+ ++....+++|+|++||+++++.. ||+|++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999998777765 55555568999999999998865 99999999999999999
Q ss_pred chhhhh
Q 000560 803 YEDLIA 808 (1421)
Q Consensus 803 ~~~l~~ 808 (1421)
.+++..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 888765
No 392
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.1e-34 Score=315.26 Aligned_cols=188 Identities=26% Similarity=0.417 Sum_probs=159.4
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+.. ..+.+++ ||++++|++++|+|+||||||||+++|+|+.+|.+|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 458999999999742 2468999 99999999999999999999999999999999999997 6654
Q ss_pred -----EEEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
.++|++|+|.++++|++||+.+...++.+ ++.+.+. +++++.+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~---~~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDE---EIYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHH---HHHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 48999999999889999999875444332 2222221 346788999999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecC
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~ 802 (1421)
++.+|+++||||||++||+.+...+.+ .+....+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999998777665 4554456899999999999987799999999999988775
No 393
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=331.87 Aligned_cols=198 Identities=28% Similarity=0.387 Sum_probs=163.6
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.. .+.++| ||++++||+++|+|+||||||||+++|.|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 58899999999632 368999 99999999999999999999999999999999999987 6655
Q ss_pred ----EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+| .++..|++||+.|+.. .+. ++.+++++.+++... ......+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF-----------RDKPPYHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCChhhCCHHHH
Confidence 379999998 5678899999998742 222 234445555555322 2345679999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||++||||++.+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+.++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988887644333235899999999999985 599999999999999999865
Q ss_pred h
Q 000560 806 L 806 (1421)
Q Consensus 806 l 806 (1421)
+
T Consensus 225 ~ 225 (274)
T PRK13647 225 L 225 (274)
T ss_pred h
Confidence 4
No 394
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=326.00 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=165.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g--- 659 (1421)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36899999999963 358999 999999999999999999999999999999987 48986 5433
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.+++.|++|||.++... +. ++.++.++.+++...+. ...+.++.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcc
Confidence 37999999998889999999986421 11 12233344444322111 12345788
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999888776 45555567999999999999765 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++.+
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999988865
No 395
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-34 Score=321.46 Aligned_cols=197 Identities=32% Similarity=0.420 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------EE
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------~i 661 (1421)
++++|.+++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46889999986420 11468999 99999999999999999999999999999999999997 6655 48
Q ss_pred EEEcCCCcCCC-CcHHHHhccCCCC---C----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHH
Q 000560 662 AYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1421)
Q Consensus 662 ayv~Q~~~i~~-~Ti~enI~fg~~~---~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LAR 733 (1421)
+|++|+|.++. .|++||+.++... . .++.++.++.+++.+. ...+..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999998765 7999999875321 1 1223344444444322 23556789999999999999
Q ss_pred HhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEe--CCEEEEecCc
Q 000560 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK--DGKIEQSGKY 803 (1421)
Q Consensus 734 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~--~G~i~~~g~~ 803 (1421)
|++.+|+++||||||++||+.+...+++.+.+... .++|+|++||+++++.. ||++++|+ +|+++++++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999998888764433223 47999999999998765 99999999 7999988764
No 396
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-34 Score=332.38 Aligned_cols=204 Identities=24% Similarity=0.420 Sum_probs=164.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+... ....+.|+| ||+|++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999996430 012468999 99999999999999999999999999999999999987 5554
Q ss_pred --------EEEEEcCCC--cCCCCcHHHHhccCCC---CCHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 --------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.+|||+|+| .++..|++|||.|+.. ++.+. .++.++.++|..+ ..+..+.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 369999997 5677899999998742 23222 2233333333211 2235678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchh-ccCEEEEEeCCEEEE
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1421)
||||||++||||++.+|+++||||||++||+.+...+.+. +..+. .|+|+|++||+++++. .||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998887664 44432 4899999999999875 599999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988765
No 397
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-34 Score=358.23 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=171.6
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CccEEEEcCeeCCCCChHH-Hhc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRS 1283 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~ 1283 (1421)
-|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3599999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ccEEEccCCccccc-cHhhhcCCCCC------CCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1284 RLSIIPQDPMLFQG-TVRTNLDPLEQ------HSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1284 ~i~iIpQdp~LF~g-TIR~NLdp~~~------~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
+++|+||+|.+|.. |+++|+..... .+. +++.++++..++.+ -.+..+ .+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-------NPATPV----GNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHHHH
Confidence 89999999988865 99999974211 121 34556666665532 233344 4699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+.+|+|||||||||+||+.+...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|+++
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 999999999999999999999999999999999998863 47899999999999865 9999999999974
No 398
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-34 Score=317.27 Aligned_cols=191 Identities=26% Similarity=0.333 Sum_probs=157.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468899999853 368999 99999999999999999999999999999999999987 6655
Q ss_pred -EEEEEcCCCcCC-CCcHHHHhccCCC---CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHH
Q 000560 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1421)
Q Consensus 660 -~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARA 734 (1421)
.++|++|++.++ +.|++||+.++.. .++++.++.++..++... ...++.+||||||||++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHH
Confidence 479999998876 6799999987532 234445555555555332 234567899999999999999
Q ss_pred hccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 735 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999888776433322358999999999999865 9999999999998764
No 399
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-34 Score=317.60 Aligned_cols=186 Identities=32% Similarity=0.473 Sum_probs=153.8
Q ss_pred EEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------EE
Q 000560 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (1421)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g----------~i 661 (1421)
++|.+++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++| .+
T Consensus 2 ~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcce
Confidence 56788888531 368999 99999999999999999999999999999999999997 6655 47
Q ss_pred EEEcCCC--cCCCCcHHHHhccCCCC---CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhc
Q 000560 662 AYVPQSS--WIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1421)
Q Consensus 662 ayv~Q~~--~i~~~Ti~enI~fg~~~---~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1421)
+|++|+| .++..|++||+.++.+. ++++.+++++.+++.+. ......+||||||||++||||++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHH
Confidence 9999997 45678999999886432 22345566666665432 23456789999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 737 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999998887765 44444 458999999999999875 9999999999874
No 400
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-33 Score=363.23 Aligned_cols=94 Identities=28% Similarity=0.390 Sum_probs=82.5
Q ss_pred ccCCCCcCChHHHHHHHHHHHhccCC--CEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEE
Q 000560 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1421)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~ 791 (1421)
.++...+|||||+|||.||||+.++| ++|||||||++||++...++++.+.+...+|+|||+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46778999999999999999999986 8999999999999999888876543333458999999999999989999999
Q ss_pred E------eCCEEEEecCchhhh
Q 000560 792 M------KDGKIEQSGKYEDLI 807 (1421)
Q Consensus 792 l------~~G~i~~~g~~~~l~ 807 (1421)
| ++|+|+++|+++++.
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ecccccCCCCEEeeccCHHHHh
Confidence 9 899999998876654
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.2e-34 Score=325.02 Aligned_cols=197 Identities=27% Similarity=0.386 Sum_probs=159.9
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999998622 368999 99999999999999999999999999999999999987 5554
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCCC------------C---HHHHHHHHHHhccchhHHhhcCCCCccccCC
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~~------------~---~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~ 717 (1421)
.++|++|++.++. .|++||+.++... . .++.++.++.+++.. ..+.+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCC
Confidence 2799999988764 6999999876321 1 112233333333321 23456
Q ss_pred CCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeC
Q 000560 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1421)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~ 794 (1421)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+ . .++|+|++||+++++.. ||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 78999999999999999999999999999999999998877765 44444 3 37899999999999854 999999999
Q ss_pred CEEEEecCchhhh
Q 000560 795 GKIEQSGKYEDLI 807 (1421)
Q Consensus 795 G~i~~~g~~~~l~ 807 (1421)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (243)
T TIGR02315 222 GEIVFDGAPSELD 234 (243)
T ss_pred CEEEecCCHHHhC
Confidence 9999999988763
No 402
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-34 Score=340.58 Aligned_cols=205 Identities=26% Similarity=0.356 Sum_probs=167.8
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
...++++|++++|+. .+.+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 17 ~~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCC
Confidence 346999999999853 357899 99999999999999999999999999999999999997 6666
Q ss_pred ----EEEEEcCCCcCCC-CcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
.++||+|++-++. .||+|||.|+.. ... ++.++.++..++.. ....+..+|||||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQ 156 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHH
Confidence 3799999998874 699999999743 222 22233344444321 223567899999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||+|||||+.+|+++|||||||+||+.....+.+.+.+-.. .+.|+|+||||.+++. .||+|++|++|++.+.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99999999999999999999999999998887665443333 3799999999999865 599999999999999999999
Q ss_pred hhhhhhh
Q 000560 806 LIADQNS 812 (1421)
Q Consensus 806 l~~~~~~ 812 (1421)
+..++..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 8864443
No 403
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.2e-34 Score=334.12 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=164.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|.+++|+. ...++| ||+|++||+++++||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46899999999963 358999 99999999999999999999999999999999999987 6654
Q ss_pred ----EEEEEcCCCcCC-CCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 660 ----~iayv~Q~~~i~-~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
.+|||||++.++ +.|++||+.|.... +. ++.+++++.+++.. ....+..+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHH
Confidence 489999999876 57999999853221 11 12233344443321 123456789999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1421)
|++||||+.++|++++|||||++||+..++.+++. +..+ .+|+|+|++||++++++. ||+|++|++|++++.|++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998887764 4444 358999999999999876 99999999999999999988
Q ss_pred hhh
Q 000560 806 LIA 808 (1421)
Q Consensus 806 l~~ 808 (1421)
+.+
T Consensus 225 l~~ 227 (306)
T PRK13537 225 LIE 227 (306)
T ss_pred HHh
Confidence 865
No 404
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=303.94 Aligned_cols=202 Identities=24% Similarity=0.415 Sum_probs=171.8
Q ss_pred CcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhcc
Q 000560 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSR 1284 (1421)
Q Consensus 1206 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~ 1284 (1421)
+.+..+|+..+|.. ..|++||||++++||.||+.||||+||||.+.++.|++.|++|+|.+||.||+.+|++. -|-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999975 36999999999999999999999999999999999999999999999999999999987 5778
Q ss_pred cEEEccCCccccc-cHhhhcCCCCCCCH---------HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPLEQHSD---------QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~~sd---------eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
|||.||||.+|.+ ||++||...-+..+ +++.+.|+.-++.. .-...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHHHH
Confidence 9999999999987 99999975322222 12333344444332 223346789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChh-hhhccCEEEEEeCCee
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVIDNDLVLVLDEGKL 1420 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~-ti~~~DrIlvL~~G~I 1420 (1421)
|||||..+|+.++||||.|++||-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeE
Confidence 9999999999999999999999999999999998764 4667888889975 6677999999999997
No 405
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-34 Score=338.85 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=164.3
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68899999997320 12468999 99999999999999999999999999999999999987 5554
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++. .|++||+.++.. .... +.++.++..++.. ....++.+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-----------KADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 4899999998764 799999988632 2222 2223333333321 2345678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecC
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1421)
|||++||||++.+|+++||||||++||+.+...+.+. +..+ . .|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999998888764 4443 3 37999999999999875 99999999999999999
Q ss_pred chhhhhh
Q 000560 803 YEDLIAD 809 (1421)
Q Consensus 803 ~~~l~~~ 809 (1421)
.+++...
T Consensus 225 ~~~~~~~ 231 (343)
T PRK11153 225 VSEVFSH 231 (343)
T ss_pred HHHHHhC
Confidence 9988753
No 406
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-34 Score=324.52 Aligned_cols=198 Identities=27% Similarity=0.358 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4678999998641 368999 99999999999999999999999999999999999987 5544
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCCC------------CH---HHHHHHHHHhccchhHHhhcCCCCccccCC
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~~------------~~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~ 717 (1421)
.++|++|++.++. .|++||+.++... .+ ++.++.++..++. ...+.+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCC
Confidence 3799999987764 7999999875321 11 1122223333221 123467
Q ss_pred CCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCC
Q 000560 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1421)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G 795 (1421)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+.+..... .|+|+|++||+++.+. .||++++|++|
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999998888764433223 3899999999999987 59999999999
Q ss_pred EEEEecCchhhh
Q 000560 796 KIEQSGKYEDLI 807 (1421)
Q Consensus 796 ~i~~~g~~~~l~ 807 (1421)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (241)
T cd03256 222 RIVFDGPPAELT 233 (241)
T ss_pred EEEeecCHHHhh
Confidence 999999988763
No 407
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.9e-34 Score=357.30 Aligned_cols=202 Identities=27% Similarity=0.426 Sum_probs=174.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHh-ccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1285 (1421)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+..+.+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEccCCccccc-cHhhhcCCCCC-C--CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhcc
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLEQ-H--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~~-~--sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1361 (1421)
+|+||++.+|.+ |+++|+..... . .++++.++++..++.+. ++..+ .+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA----GSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh----hhCCHHHHHHHHHHHHHHc
Confidence 999999988876 99999975321 1 23456677777776432 33444 4699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|+++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999998853 47899999999999865 9999999999974
No 408
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=356.89 Aligned_cols=202 Identities=22% Similarity=0.352 Sum_probs=170.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHH-Hhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1285 (1421)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997665544 46789
Q ss_pred EEEccCCccccc-cHhhhcCCCC-------CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLE-------QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-------~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1353 (1421)
+|+||+|.+|.. |+++|+.... ..+. +++.++++..++.+ .+|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------CccCch----hhCCHHHHHHH
Confidence 999999988865 9999997421 1122 23455566665532 234444 46999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1354 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1354 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
+|||||+.+|++|+|||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|+++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999998753 46899999999999865 9999999999974
No 409
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.4e-34 Score=320.56 Aligned_cols=190 Identities=31% Similarity=0.424 Sum_probs=153.1
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+..+ ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46889999996420 11468999 99999999999999999999999999999999999987 4432
Q ss_pred -------EEEEEcCCCcCCC-CcHHHHhccCCCCC-------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 -------KKAYVPQSSWIQT-GTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 -------~iayv~Q~~~i~~-~Ti~enI~fg~~~~-------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++|++|++.++. .|++||+.++..+. +++.++.++..++.. ..+.++.+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHH
Confidence 4899999998776 49999999864321 122334444444322 234567899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEeCCEE
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1421)
||||++||||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++..||++++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999998877765 444443 37999999999998878999999999974
No 410
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=356.98 Aligned_cols=202 Identities=26% Similarity=0.391 Sum_probs=171.7
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh-HHHhccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1285 (1421)
.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred EEEccCCccccc-cHhhhcCCCC-----C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLE-----Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1354 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-----~-~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1354 (1421)
+|+||+|.+|.+ |+++|+.... . .. ++++.++++.+++.+ ..+..+ .+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPL----KYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCch----hhCCHHHHHHHH
Confidence 999999998876 9999997421 1 11 234566666666532 223333 469999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1355 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1355 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999998763 47899999999999865 9999999999974
No 411
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-34 Score=319.30 Aligned_cols=197 Identities=25% Similarity=0.441 Sum_probs=161.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|+++.|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4688999998642 2468999 99999999999999999999999999999999999987 5654
Q ss_pred --EEEEEcCCCcCC-CCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++-++ +.|++||+.++.. ... ++.+++++.+++... .+....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHH
Confidence 379999998876 6799999987531 111 234445555554321 2345678999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1421)
+||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999998887775 45555557999999999999865 999999999999999887664
No 412
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.4e-34 Score=318.89 Aligned_cols=203 Identities=30% Similarity=0.443 Sum_probs=168.2
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
...++++|++++|+.. ...+.+++ |+++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 3569999999999753 22468999 99999999999999999999999999999999999987 6654
Q ss_pred ------EEEEEcCCCcCCCCcHHHHhccCCCCC-HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHH
Q 000560 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~~Ti~enI~fg~~~~-~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1421)
.++|++|++.++..|++||+.++.... ...+.+..+...+.+-++.++.|..+..++++.+||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 379999999988889999999875422 2222222333344555667766666677888999999999999999
Q ss_pred HHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEE
Q 000560 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1421)
Q Consensus 733 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i 797 (1421)
||++++|+++||||||++||+++...+.+ .+..+.+++|+|++||+++++..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999887765 45455557899999999999877999999999974
No 413
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=358.17 Aligned_cols=202 Identities=21% Similarity=0.319 Sum_probs=172.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH-hccc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRL 1285 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1285 (1421)
-|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.+.. |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776654 4679
Q ss_pred EEEccCCccccc-cHhhhcCCCC-------CC---C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000560 1286 SIIPQDPMLFQG-TVRTNLDPLE-------QH---S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1286 ~iIpQdp~LF~g-TIR~NLdp~~-------~~---s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1350 (1421)
+|+||++.+|.. |+++|+.... .. + ++++.++++.+++.+ .+|.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHH
Confidence 999999988875 9999996421 10 1 134556666666532 234444 46999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||++|||||+++|+||+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 99999999999999999999999999999999999998853 47899999999999875 9999999999974
No 414
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.8e-34 Score=314.47 Aligned_cols=173 Identities=27% Similarity=0.435 Sum_probs=147.7
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCC--CChHHHhcccEEEccCC--ccccc
Q 000560 1222 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRLSIIPQDP--MLFQG 1297 (1421)
Q Consensus 1222 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i~iIpQdp--~LF~g 1297 (1421)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++++++||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 359999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHhhhcCCC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000560 1298 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1370 (1421)
Q Consensus 1298 TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1370 (1421)
|+++|+... ...+ ++++.++++..++.+..... + ..||+|||||++|||||+++|++|+|||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-------T----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-------h----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999642 1122 23567788888886654332 2 4699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh
Q 000560 1371 ATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT 1405 (1421)
Q Consensus 1371 aTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t 1405 (1421)
||++||+.+...+.+.|++.. +++|||+|+|+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 47899999999865
No 415
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4e-34 Score=317.57 Aligned_cols=187 Identities=31% Similarity=0.459 Sum_probs=150.9
Q ss_pred EEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------EEEE
Q 000560 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAY 663 (1421)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------~iay 663 (1421)
++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| .++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 5678888853 357899 99999999999999999999999999999999999997 7766 3899
Q ss_pred EcCCCcC---CCCcHHHHhccCCCC--------C---HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 664 VPQSSWI---QTGTIRENILFGKDM--------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 664 v~Q~~~i---~~~Ti~enI~fg~~~--------~---~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
++|++.+ ++.|++||+.++... . +++.+++++.+++.+. ...+..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-----------ADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHH
Confidence 9999875 457999999886431 1 1234445555554322 2245678999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
+||||+..+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|++| +++.
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999999888776443323368999999999999865 9999999986 4444
No 416
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-34 Score=322.85 Aligned_cols=195 Identities=28% Similarity=0.342 Sum_probs=161.7
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45999999999963 368999 99999999999999999999999999999999999997 5655
Q ss_pred EEEEEcCCCcCCC-CcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhcc
Q 000560 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1421)
Q Consensus 660 ~iayv~Q~~~i~~-~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1421)
.++|++|++.++. .|++||+.++... .+++.++.++..++.. ..+.++.+||||||||++||||++.
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhc
Confidence 4899999987765 6999999886421 1233444555554432 2345678999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCch
Q 000560 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 738 ~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 804 (1421)
+|+++||||||++||+.+...+.+. +..+ . .++|+|++||+++++.. ||+|++|++|+++++|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999988877664 4443 3 47999999999998765 9999999999999888754
No 417
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-34 Score=327.77 Aligned_cols=199 Identities=29% Similarity=0.408 Sum_probs=163.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+.. .+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6789999999632 358999 99999999999999999999999999999999999987 5544
Q ss_pred ----EEEEEcCCCc--CCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+|. +++.|++|||.++.. .+. ++.+++++.+++.. ..+..+.+||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-----------YRHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCCcccCCHHHH
Confidence 3799999986 457899999988642 122 22333444444322 23356789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l 806 (1421)
||++||||++.+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++.++.||+|++|++|++++.|+.+++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999998888776543322358999999999999878999999999999999998887
Q ss_pred hh
Q 000560 807 IA 808 (1421)
Q Consensus 807 ~~ 808 (1421)
..
T Consensus 223 ~~ 224 (274)
T PRK13644 223 LS 224 (274)
T ss_pred hc
Confidence 65
No 418
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-34 Score=327.63 Aligned_cols=201 Identities=27% Similarity=0.402 Sum_probs=166.8
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+.. ..+.+++ ||+|++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcH
Confidence 358999999999642 2468999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCC--cCCCCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~--~i~~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|+| .+++.|++|||.++... .. ++.+++++.++|... +.....+|||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~ 145 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDF-----------LNREPHRLSGGQ 145 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHH
Confidence 379999998 45678999999986321 21 233445555555432 234567999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhccCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~ 803 (1421)
|||++||||++.+|+++||||||++||+.+...+++. +..+. + |+|+|++||+++.+..||+|++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999998888764 44443 3 7999999999999888999999999999999998
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++..
T Consensus 225 ~~~~~ 229 (279)
T PRK13635 225 EEIFK 229 (279)
T ss_pred HHHhc
Confidence 88765
No 419
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=323.63 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=166.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g--- 659 (1421)
..++++|++++|+. .+.++| ||++++||+++|+||||||||||+++|+|.++ |++|++ .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 45899999999963 368999 99999999999999999999999999999986 478986 4543
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCC----CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~----~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ...+++..
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 4899999998888999999987632 222 22334444444433222 23456788
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||++++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998777765 45544567899999999999865 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999888765
No 420
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.8e-34 Score=332.49 Aligned_cols=201 Identities=30% Similarity=0.426 Sum_probs=163.2
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
+..++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~ 72 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRA 72 (303)
T ss_pred CcEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccH
Confidence 346899999999963 358999 99999999999999999999999999999999999987 6654
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccC-CC--CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFG-KD--MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg-~~--~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|++.++ ..|++||+.+. .. .+.. +.+++++.+++.. ....+..+||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMK 141 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHH
Confidence 489999998876 57999999752 21 2221 2223333333321 12356679999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||++||||++.+|+++||||||++||+.+...+.+.+..-..+|+|+|++||+++++.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888776443333358999999999999865 99999999999999999888
Q ss_pred hhh
Q 000560 806 LIA 808 (1421)
Q Consensus 806 l~~ 808 (1421)
+..
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 754
No 421
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.7e-34 Score=320.65 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=159.7
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468899999863 358999 99999999999999999999999999999999999987 5543
Q ss_pred ----EEEEEcCCCcCCCC-cHHHHhccCCCC---CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHH
Q 000560 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~-Ti~enI~fg~~~---~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkq 727 (1421)
.++|++|++.++.. |++||+.++.+. ... +.++.++..++. ...+....+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHH
Confidence 37999999987664 999999875321 111 122233333221 2334677899999999
Q ss_pred HHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchh
Q 000560 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 728 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1421)
|++||||++.+|+++||||||++||+.+.+.+.+. ++.. .+++|+|++||+++.+.. ||+|++|++|++.+.|+.++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 99999999999999999999999999988877764 4443 358999999999988765 99999999999999998887
Q ss_pred hhh
Q 000560 806 LIA 808 (1421)
Q Consensus 806 l~~ 808 (1421)
+..
T Consensus 220 ~~~ 222 (232)
T cd03218 220 IAA 222 (232)
T ss_pred hhc
Confidence 654
No 422
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.6e-34 Score=318.53 Aligned_cols=197 Identities=26% Similarity=0.421 Sum_probs=158.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468899998853 368999 99999999999999999999999999999999999987 5544
Q ss_pred ----EEEEEcCCCcCCC-CcHHHHhccCCCCC--HH---HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR--QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~-~Ti~enI~fg~~~~--~~---~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.++. .|++||+.++.... .+ +.+++++.+ ..++ ...+.++.+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHH
Confidence 3799999998766 49999998865432 11 112222222 1111 123467789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
+||||+..+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999988877764 4443 358999999999998765 9999999999999998877654
No 423
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-34 Score=324.30 Aligned_cols=188 Identities=23% Similarity=0.352 Sum_probs=155.7
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC----CccEEEEcCeeCCCCChHHHhcccEEEccCCc-ccc--
Q 000560 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ-- 1296 (1421)
Q Consensus 1224 vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-- 1296 (1421)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred ccHhhhcCC----CCCC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000560 1297 GTVRTNLDP----LEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1369 (1421)
Q Consensus 1297 gTIR~NLdp----~~~~---sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1369 (1421)
-|+++|+.. .+.. .++++.++++.+++.+. +........+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888631 1111 23457788888877521 11122334579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1370 EATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1370 EaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||++||..+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999998643 7899999999999864 9999999999974
No 424
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-34 Score=328.50 Aligned_cols=185 Identities=33% Similarity=0.462 Sum_probs=152.5
Q ss_pred cccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----------------EEEEEcCCCcCC-
Q 000560 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1421)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-----------------~iayv~Q~~~i~- 671 (1421)
.+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++| .++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 357899 99999999999999999999999999999999999986 5533 489999999887
Q ss_pred CCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEe
Q 000560 672 TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1421)
Q Consensus 672 ~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1421)
+.|++||+.++.. .+. ++.+++++.+++.+. ......+||||||||++||||++.+|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW-----------EHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 111 233444554444322 2355678999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhh
Q 000560 745 DDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
||||++||+.+.+.+.+. +..+ . .|+|+|++||+++++.. ||++++|++|++.+.|+.+++.+
T Consensus 185 DEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 185 DEAFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999988877764 4443 2 37999999999998765 99999999999999999988865
No 425
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7e-34 Score=320.61 Aligned_cols=197 Identities=22% Similarity=0.400 Sum_probs=162.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999863 368999 99999999999999999999999999999999999987 5554
Q ss_pred --EEEEEcCCCcC-CCCcHHHHhccCCCC---CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWI-QTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i-~~~Ti~enI~fg~~~---~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.+ +..|++||+.++... ... +.++.++..++. ...+.++.+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHH
Confidence 37999999877 568999999875321 111 112223322221 234567789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEeCCEEEEecCchhhh
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
+||||++.+|+++||||||++||+.+.+.+.+. +..+. +++|+|++||+++++..||+|++|++|++.+.|+.+++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999998888764 44443 489999999999998789999999999999999988776
Q ss_pred h
Q 000560 808 A 808 (1421)
Q Consensus 808 ~ 808 (1421)
+
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 5
No 426
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.6e-34 Score=317.11 Aligned_cols=191 Identities=29% Similarity=0.410 Sum_probs=154.7
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468899999863 358999 99999999999999999999999999999999999987 5554
Q ss_pred -EEEEEcCCCcCC-CCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 -~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
.++|++|++.++ +.|++||+.++.. ...+ +.++.++..++.. .......+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHH
Confidence 489999999887 4699999987632 1222 2223333333321 234567899999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||||++.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998887764433323 37999999999998765 9999999999998765
No 427
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-34 Score=320.63 Aligned_cols=206 Identities=27% Similarity=0.452 Sum_probs=167.2
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCC-C----CccEEEEcCeeCCCCChHH
Q 000560 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-P----SGGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~-p----~~G~I~IDG~dI~~i~l~~ 1280 (1421)
++++|+++.|.... -.+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996543 368999999999999999999999999999999999998 3 5899999999999999875
Q ss_pred Hh----cccEEEccCCcc-ccc--cHhhhcC----CCCCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1281 LR----SRLSIIPQDPML-FQG--TVRTNLD----PLEQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1281 LR----~~i~iIpQdp~L-F~g--TIR~NLd----p~~~~-s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
+| ++|++|||||.- |+- ||.+-+. ..... + .++..+.|+++++.+--+ .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 43 379999999841 221 3333321 11111 1 235777788888764311 12223456
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.. .++|+|+|||++..+.. ||||.||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998865 48999999999999865 9999999999986
No 428
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-34 Score=328.99 Aligned_cols=204 Identities=24% Similarity=0.400 Sum_probs=164.1
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.... ...+.++| ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4789999999974200 01468999 99999999999999999999999999999999999987 5544
Q ss_pred --------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 --------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.++|++|+| .++..|++|||.|+.. ... ++.++.++.+++..+ ....+..+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCC
Confidence 379999997 4667899999987632 221 223344444444321 1235678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
||||||++||||++.+|+++||||||++||+...+.+.+ ++..+. +|+|+|++||+++++.. ||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998777765 454443 58999999999999865 999999999999999
Q ss_pred cCchhhhh
Q 000560 801 GKYEDLIA 808 (1421)
Q Consensus 801 g~~~~l~~ 808 (1421)
|+.+++..
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99888764
No 429
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-34 Score=319.46 Aligned_cols=196 Identities=27% Similarity=0.346 Sum_probs=159.1
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997430 12468999 99999999999999999999999999999999999987 5544
Q ss_pred --------EEEEEcCCCcCCC-CcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 --------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
.++|++|++.++. .|++||+.++.. .+. ++.+++++.+++.. ..+++..+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCH
Confidence 3899999988765 599999987421 121 22334444444421 23456789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhccCEEEEEeCCEEEEec
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1421)
|||||++||||++.+|+++||||||++||+.+...+.+. +..+ . +|+|+|++||+++++..+|++++|++|+|++.|
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999988877654 4443 2 489999999999998888999999999999877
Q ss_pred C
Q 000560 802 K 802 (1421)
Q Consensus 802 ~ 802 (1421)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 5
No 430
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.6e-34 Score=339.58 Aligned_cols=198 Identities=26% Similarity=0.455 Sum_probs=165.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.|++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4789999999963 368999 99999999999999999999999999999999999987 6655
Q ss_pred ----EEEEEcCCCcC-CCCcHHHHhccCCC-----CC------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCCh
Q 000560 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----MR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1421)
Q Consensus 660 ----~iayv~Q~~~i-~~~Ti~enI~fg~~-----~~------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSG 723 (1421)
++|||+|++-+ ++.|++||+.+++. +. .++.+++++..++.+ .......+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCH
Confidence 37999999876 67899999998752 11 123334444444432 12356789999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
|||||++|||||+++|+++||||||++||+.+...+.+ +++.+. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999998888775 444443 58999999999999865 9999999999999999
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
++++++.
T Consensus 222 ~~~ev~~ 228 (402)
T PRK09536 222 PPADVLT 228 (402)
T ss_pred CHHHHhC
Confidence 9999875
No 431
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-34 Score=319.58 Aligned_cols=201 Identities=28% Similarity=0.404 Sum_probs=160.9
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 67899999986320 11378999 99999999999999999999999999999999999987 5543
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++. .|++||+.++.. .+.. +.++.++..++. ........+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-----------DKADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhhcChhhCCHHH
Confidence 3799999998875 699999987532 2211 122233333332 12345678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cC-CcEEEEEcCCccchhc-cCEEEEEeCCEEEEecC
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~ 802 (1421)
|||++||||++.+|+++||||||++||+.+...+.+. +..+ .+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999988877664 4443 33 8999999999999865 99999999999999998
Q ss_pred chhhhh
Q 000560 803 YEDLIA 808 (1421)
Q Consensus 803 ~~~l~~ 808 (1421)
.+++.+
T Consensus 225 ~~~~~~ 230 (233)
T cd03258 225 VEEVFA 230 (233)
T ss_pred HHHHhc
Confidence 877643
No 432
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-34 Score=321.10 Aligned_cols=201 Identities=27% Similarity=0.393 Sum_probs=160.9
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 3678999998641 358999 99999999999999999999999999999999999987 5554
Q ss_pred ---EEEEEcCCCcCCC-CcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~-~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
.++|++|+|.++. .|++||+.++..+ +. ++.++.++..++.. ....++++.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 4799999998774 7999999876322 21 12233333333321 012346678999999999
Q ss_pred HHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhh
Q 000560 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1421)
Q Consensus 729 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 806 (1421)
++||||++.+|++++|||||++||+.+...+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999987777654433223 38999999999998765 999999999999999988877
Q ss_pred hh
Q 000560 807 IA 808 (1421)
Q Consensus 807 ~~ 808 (1421)
.+
T Consensus 224 ~~ 225 (242)
T cd03295 224 LR 225 (242)
T ss_pred Hc
Confidence 54
No 433
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.3e-34 Score=311.99 Aligned_cols=188 Identities=20% Similarity=0.328 Sum_probs=160.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccEE
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1287 (1421)
++++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.+.. ++.+++
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999964 3344 599999999999999999999999999999999999999999999987542 456999
Q ss_pred EccCCc-cccccHhhhcCCCC-C-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000560 1288 IPQDPM-LFQGTVRTNLDPLE-Q-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1364 (1421)
Q Consensus 1288 IpQdp~-LF~gTIR~NLdp~~-~-~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1364 (1421)
+||++. +|..|+++|+.... . ..++++.++++.+++.+... ..+.+||+|||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 46789999996422 1 14567788888888865543 2345799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHH-cCCcEEEEEecChhhhhccCEEE
Q 000560 1365 ILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVL 1413 (1421)
Q Consensus 1365 ILiLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIl 1413 (1421)
+|+|||||+++|+.+...+.+.|++. .+++|+|+++|+++.+.++|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 36799999999999999998763
No 434
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-34 Score=327.60 Aligned_cols=199 Identities=24% Similarity=0.410 Sum_probs=165.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.+ .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 368999 99999999999999999999999999999999999987 5554
Q ss_pred ------EEEEEcCCC--cCCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 ------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++|++|+| .+++.|++||+.++.. +.. ++.+++++.+++.. ..+.++.+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHH
Confidence 379999998 4677899999987532 111 23344455555432 123678899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchh-ccCEEEEEeCCEEEEec
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g 801 (1421)
||||++||||++.+|+++||||||++||+.+...+.+. +..+. + |+|||++||+++++. .||+|++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999988877664 44443 3 899999999999987 59999999999999999
Q ss_pred Cchhhhh
Q 000560 802 KYEDLIA 808 (1421)
Q Consensus 802 ~~~~l~~ 808 (1421)
+++++..
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 9988865
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.4e-34 Score=316.59 Aligned_cols=194 Identities=23% Similarity=0.378 Sum_probs=156.3
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999996430 11268999 99999999999999999999999999999999999987 6654
Q ss_pred --EEEEEcCCCcCCC-CcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.++. .|++||+.+... ... ++.++.++..++.+ ..++++.+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHH
Confidence 4799999998776 599999976432 111 22333444444322 23457789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
+||||++.+|+++||||||++||+.+.+.+.+. +..+ .+++|+|++||+++++.. ||++++|++|++.+.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999988877664 4443 358999999999998765 9999999999998654
No 436
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-34 Score=312.34 Aligned_cols=194 Identities=32% Similarity=0.454 Sum_probs=161.9
Q ss_pred cccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-----------------EEEEEcCCCcC-CCC
Q 000560 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWI-QTG 673 (1421)
Q Consensus 613 ~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-----------------~iayv~Q~~~i-~~~ 673 (1421)
-++| ||+|+.||+..|.|-+|||||||++++.++++|++|++ .++| ++++|+|+--+ +..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 4677 99999999999999999999999999999999999997 7766 46999999654 678
Q ss_pred cHHHHhccCCCCC----HHHHHHH---HHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeC
Q 000560 674 TIRENILFGKDMR----QSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1421)
Q Consensus 674 Ti~enI~fg~~~~----~~~y~~v---~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 746 (1421)
||.||+.||.+.. +++.+++ ++..+|... . ..++.+||||+||||.|||||..||||+|+||
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~----~-------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGY----A-------DKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh----h-------hcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999998753 3444444 444444322 1 25678999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccc-hhccCEEEEEeCCEEEEecCchhhhhhhhhHHHHHH
Q 000560 747 PFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1421)
Q Consensus 747 p~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1421)
|||||||-.+..+-++++.-.. -+||+|+||||+++ +...|||.+|+||+|++.|+++|+..++..++.+..
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 9999999988887777664332 37999999999998 466999999999999999999999987766665544
No 437
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=323.91 Aligned_cols=205 Identities=22% Similarity=0.355 Sum_probs=166.8
Q ss_pred CCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC-
Q 000560 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG- 659 (1421)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g- 659 (1421)
++..++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 16 ~~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~ 86 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGE 86 (267)
T ss_pred CCceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCE
Confidence 3457999999999963 368999 999999999999999999999999999999974 88986 5543
Q ss_pred --------------EEEEEcCCCcCCCCcHHHHhccCCCC-----C----HHHHHHHHHHhccchhHHhhcCCCCccccC
Q 000560 660 --------------KKAYVPQSSWIQTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1421)
Q Consensus 660 --------------~iayv~Q~~~i~~~Ti~enI~fg~~~-----~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~ 716 (1421)
.++|++|+|.++..|++||+.++... . .++.++.++.+++.+++. +..++
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 159 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHE 159 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhC
Confidence 37999999988878999999876321 1 122344455555433221 12346
Q ss_pred CCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCC
Q 000560 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1421)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G 795 (1421)
.+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++++.. ||++++|++|
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 778999999999999999999999999999999999998777765 55555557899999999999865 9999999999
Q ss_pred EEEEecCchhhhh
Q 000560 796 KIEQSGKYEDLIA 808 (1421)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1421)
++.+.|+.+++..
T Consensus 239 ~i~~~g~~~~~~~ 251 (267)
T PRK14235 239 NLVEVGDTEKMFT 251 (267)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999888764
No 438
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-33 Score=319.01 Aligned_cols=197 Identities=29% Similarity=0.417 Sum_probs=161.2
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.++| ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999853 358999 99999999999999999999999999999999999987 5544
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCCC----CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~~----~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++ ..|++||+.++.. .+.. +..++++..++. ...+.+..+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHH
Confidence 379999998876 4699999988631 1221 122333333322 22345678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
|||++||||++.+|++++|||||++||+++...+.+ ++..+. +++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999999887776 454443 58999999999999865 999999999999999998
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++.+
T Consensus 221 ~~~~~ 225 (240)
T PRK09493 221 QVLIK 225 (240)
T ss_pred HHHhc
Confidence 88765
No 439
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=322.22 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=164.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 5889999999963 368999 99999999999999999999999999999986 478986 4443
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.++... ++ ++.+++++.+++..+.. ...+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhh
Confidence 37999999998889999999876321 11 22334444444432111 123467789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++.+
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998777765 45555557999999999999765 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999888764
No 440
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=322.64 Aligned_cols=202 Identities=22% Similarity=0.367 Sum_probs=163.6
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc--C---CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~vi~~~g---- 659 (1421)
.++++|+++.|+. .+.+++ ||+|++||+++|+|+||||||||+++|+|.++ | ++|++ .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999863 368999 99999999999999999999999999999987 3 58986 4443
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.++... +++. .+++++..++.+.+. +..+.++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCccc
Confidence 37999999998888999999886422 1111 222333333332211 223567889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+++...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998777755 55555567999999999999765 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999988765
No 441
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-34 Score=315.20 Aligned_cols=189 Identities=24% Similarity=0.381 Sum_probs=154.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|+++.|+. .+.+++ ||++++| +++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 468899999953 368999 9999999 999999999999999999999999999997 6655
Q ss_pred --EEEEEcCCCcCCC-CcHHHHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 --~iayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++.++. .|++||+.+... .+ +++.++.++.+++... ......+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHH
Confidence 4799999998875 599999987421 11 1223344444444322 1245678999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
+||||++++|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999888775 45555457999999999999865 9999999999998764
No 442
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=4.8e-33 Score=370.75 Aligned_cols=199 Identities=27% Similarity=0.272 Sum_probs=135.5
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH---------HHhccCCCCc----c----EEEEc
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ---------ALFRVVEPSG----G----RILID 1269 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~---------~L~rl~~p~~----G----~I~ID 1269 (1421)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2699999999999999999999999999999 4444332211 1 23455
Q ss_pred CeeCCCCC----h------HHHhc---------c-----cEEEccC------------------C---------------
Q 000560 1270 GVDISMIG----L------QDLRS---------R-----LSIIPQD------------------P--------------- 1292 (1421)
Q Consensus 1270 G~dI~~i~----l------~~LR~---------~-----i~iIpQd------------------p--------------- 1292 (1421)
-.+|..-+ . +++|+ + ..+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 44433211 1 24551 1 1122221 0
Q ss_pred -----ccccc-cHhhhcCCCCC-C-----CHHHHHHHHHHcCcHHHHHhcccccCcc-ccCCCCCCChhHHHHHHHHHHh
Q 000560 1293 -----MLFQG-TVRTNLDPLEQ-H-----SDQEIWEVINKCHLAEIVRQDQRLLDAP-VAEDGENWSVGQRQLVCLARVL 1359 (1421)
Q Consensus 1293 -----~LF~g-TIR~NLdp~~~-~-----sdeeI~~aL~~~~L~~~i~~lp~gLdt~-v~e~G~nLSgGQrQrl~LARAL 1359 (1421)
..+.+ ||.|||+.... + ..+++.+.++ .+.. -|++.. .+....+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 67777754211 0 1223332221 1111 134432 4555668999999999999999
Q ss_pred c---cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhccCEEEEEe------CCee
Q 000560 1360 L---KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLD------EGKL 1420 (1421)
Q Consensus 1360 L---r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~------~G~I 1420 (1421)
+ ++|+++||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~i 895 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYL 895 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEE
Confidence 8 5999999999999999999999999998764 5789999999999998899999996 5665
No 443
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-31 Score=292.73 Aligned_cols=500 Identities=16% Similarity=0.169 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch--h--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000560 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS--Y--HYGLVLASVFLFAKTVESLTQRQWYFG 341 (1421)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~--~--~~g~~l~~~l~~~~~~~~l~~~~~~~~ 341 (1421)
.-.++|.+++.++....+.+...+ ++-.++-.+-+++-.... .. . + -..+...++++..+. +.-..+.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~-~~~~~l~~-f~~llllf~~ss~is---~lg~t~~ 75 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETAD-TSLLVLPE-FLGLLLLFMVSSLIS---QLGLTTL 75 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcc-cceeeHHH-HHHHHHHHHHHHHHH---HHHHHHH
Confidence 346778888877765555544333 334444444444433221 11 1 1 111112222222222 2222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCC-ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000560 342 ANRIGIRVRSALTVLIYKRSMAIKFAGP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1421)
Q Consensus 342 ~~~~g~riR~~L~~~Iy~K~L~ls~~~~-~~G~ivnlms~D~~ri~~~~~~~h~~w~~plqi~~al~lL~~~lG~~a~l~ 420 (1421)
.+..-.++|.-++..|..--+. .-++ +++.++.-++.|+..|.-.+..+.++-.+.+-+..+...|++.-+ .....
T Consensus 76 gq~~I~klr~~~~~kil~tple--rier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l 152 (546)
T COG4615 76 GQHFIYKLRSEFIKKILDTPLE--RIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLL 152 (546)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH--HHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 3344445565555544332211 1112 788899999999999997777778777666666666777776666 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHH-HHHHHHHHHHHHHHHHH
Q 000560 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKL-LRLREIERDSLKKYLYT 497 (1421)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~q~~~m~~~D~Rv~~~sE~L~~ik~IK~~~wE~--~f~~~I-~~~R~~El~~l~~~~~~ 497 (1421)
.++.+++.+..++...++..++..+-.+.-|+-.+..+.++.|-|-+|+..=.. .+.+.. ...++.+-+ ..+.
T Consensus 153 ~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~ 228 (546)
T COG4615 153 TVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhh
Confidence 777777888888888777777777788888999999999999999999876321 122221 111222111 1111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000560 498 CSAI-AFLFWASPTLVSVITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1421)
Q Consensus 498 ~~~~-~~~~~~~p~~v~~~tF~~~~~~~~~L~-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1421)
..+. ....|+.-.+.+++....|+...-.+. ...+.|...++-.++.|+.+.-..++.+.+|.++++||.++=..|+.
T Consensus 229 n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 229 NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 233444444444443333333222222 22444555556678999999999999999999999999998776653
Q ss_pred CCCCCCCCCCCCCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcE
Q 000560 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1421)
Q Consensus 576 ~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~v 654 (1421)
.+-....+. ++-..++++|+.|+|+++ .+.+.. |++|++||++-|+|.||||||||++.++|+++|++|++
T Consensus 309 a~~~~~q~~-p~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 309 ADFPRPQAF-PDWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred ccCCCCCcC-CcccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 332111111 123469999999999875 366667 99999999999999999999999999999999999997
Q ss_pred EEECCEE-------------EEEcCCCcCCCCcHHHHhccCCC-CCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 655 IKVHGKK-------------AYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 655 i~~~g~i-------------ayv~Q~~~i~~~Ti~enI~fg~~-~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|+- +-|+-+-|+|.. .+-++. -.++..+.-++...+.... .+.+|.. ....
T Consensus 381 -~ldg~pV~~e~ledYR~LfSavFsDyhLF~~-----ll~~e~~as~q~i~~~LqrLel~~kt-sl~d~~f-----s~~k 448 (546)
T COG4615 381 -LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ-----LLGPEGKASPQLIEKWLQRLELAHKT-SLNDGRF-----SNLK 448 (546)
T ss_pred -eECCccCCCCCHHHHHHHHHHHhhhHhhhHh-----hhCCccCCChHHHHHHHHHHHHhhhh-cccCCcc-----cccc
Confidence 888752 122222333221 111111 1222222223322222221 1222222 1347
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhccCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~ 799 (1421)
||-|||.|+++--|+.-+.|||+|||=-+-=||+-++..++..+-.+. .||||+.||||-.+...|||++.|++|++++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 999999999999999999999999999999999998888877664443 5999999999999999999999999999987
Q ss_pred e
Q 000560 800 S 800 (1421)
Q Consensus 800 ~ 800 (1421)
.
T Consensus 529 ~ 529 (546)
T COG4615 529 L 529 (546)
T ss_pred c
Confidence 5
No 444
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-33 Score=304.99 Aligned_cols=165 Identities=28% Similarity=0.550 Sum_probs=147.3
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECCE---------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g~--------- 660 (1421)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|.
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4688999999643 2368999 99999999999999999999999999999999999997 67653
Q ss_pred ---EEEEcCCCcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhcc
Q 000560 661 ---KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1421)
Q Consensus 661 ---iayv~Q~~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1421)
++|++|+|++++.|++||+ +.+||||||||++||||++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 7999999999889999998 45899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCCEEEEec
Q 000560 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 738 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g 801 (1421)
+|+++||||||++||+++.+.+++. +....+++|+|++||++++++.||++++|++|++.+.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999988877764 44445689999999999999889999999999998754
No 445
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=322.37 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=164.4
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g--- 659 (1421)
..++++|+++.|+. .+.++| ||++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 35899999999853 358999 999999999999999999999999999999875 79986 4433
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.++.. .+.+ +.+++++.+++..++. ...+++..+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhh
Confidence 3799999998888999999988632 2222 1233444443322111 123467789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++++.. ||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998887765 45554457999999999999865 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+++++.+
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14268 234 FGQTRQIFH 242 (258)
T ss_pred eCCHHHHhc
Confidence 999988865
No 446
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=321.42 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=165.5
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC--
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g-- 659 (1421)
+..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|.++ |++|++ .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 356999999999963 358999 99999999999999999999999999999987 588986 5543
Q ss_pred -------------EEEEEcCCCcCCCCcHHHHhccCCCCC---H---HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -------------~iayv~Q~~~i~~~Ti~enI~fg~~~~---~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.++.... . ++.+++++.+++...++ +....+..+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCccc
Confidence 379999999888789999999875321 1 22233344443322221 234567789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeC-----
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD----- 794 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~----- 794 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999998887765 45555567999999999998865 999999996
Q ss_pred ------CEEEEecCchhhhh
Q 000560 795 ------GKIEQSGKYEDLIA 808 (1421)
Q Consensus 795 ------G~i~~~g~~~~l~~ 808 (1421)
|++++.|+.+++.+
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67899999988865
No 447
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.5e-34 Score=354.00 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=174.0
Q ss_pred cEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHHhcccE
Q 000560 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1286 (1421)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 24999999999999999999999999999999999999999999999999888777777888999
Q ss_pred EEccCCcc--c-------cccHhhhcCCCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1287 IIPQDPML--F-------QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1287 iIpQdp~L--F-------~gTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
++||+|.+ + .-|+++|+... ...++++.++++..++.+.. |.++ ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALL-------DRRF----KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhh-------hCCc----ccCCHHHHHHHHHHH
Confidence 99999753 2 45899998642 12345677888888886543 3333 359999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++|++|+|||||++||+++...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998864 36899999999999876 9999999999974
No 448
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-33 Score=332.80 Aligned_cols=201 Identities=29% Similarity=0.412 Sum_probs=164.5
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
...|+++|.+.+|+. ...|+| ||+|++|++++++||||||||||+++|+|+++|++|++ .++|
T Consensus 39 ~~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcch
Confidence 346999999999963 358999 99999999999999999999999999999999999987 6665
Q ss_pred -----EEEEEcCCCcCC-CCcHHHHhccCC-C--CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 -----KKAYVPQSSWIQ-TGTIRENILFGK-D--MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 -----~iayv~Q~~~i~-~~Ti~enI~fg~-~--~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.+||+||++.++ ..|++||+.+.. . .+. ++.+++++.++|.+ ....+..+||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~k 178 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMK 178 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHH
Confidence 379999999875 679999997532 1 121 12223333333321 12356679999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchh
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 805 (1421)
||++||||+.++|+++||||||++||+.+...+.+.+.+...+|+|||++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888876443333358999999999999875 99999999999999999988
Q ss_pred hhh
Q 000560 806 LIA 808 (1421)
Q Consensus 806 l~~ 808 (1421)
+..
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 865
No 449
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-34 Score=314.03 Aligned_cols=191 Identities=26% Similarity=0.415 Sum_probs=154.5
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------E
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------~ 660 (1421)
++++|.+++|+. .+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 467899998853 358899 99999999999999999999999999999999999997 6765 4
Q ss_pred EEEEcCCCcCCC-CcHHHHhccCCCC---C----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHH
Q 000560 661 KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1421)
Q Consensus 661 iayv~Q~~~i~~-~Ti~enI~fg~~~---~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1421)
++|++|++.++. .|++||+.++... . +++.++.++..++.. ....+..+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHH
Confidence 899999988765 5999999875321 1 112233333333321 23356789999999999999
Q ss_pred HHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 733 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999888876543333357999999999998865 9999999999998654
No 450
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=320.28 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g---- 659 (1421)
-++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4789999999863 358999 999999999999999999999999999999875 78986 5543
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.|+... .. ++.+++++.+++..+++. ..+.+..+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc
Confidence 37999999998889999999986421 11 223445555555433322 23457789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999998888765 55555557999999999999865 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999988765
No 451
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=321.53 Aligned_cols=202 Identities=26% Similarity=0.377 Sum_probs=164.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCC---ccC--CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~---~~~--~~G~vi~~~g---- 659 (1421)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|. .++ ++|++ .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 358899 999999999999999999999999999996 454 48986 4443
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++..|++||+.++... +. ++.+++++.+++.++++ +..++++.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 38999999988878999999876321 11 22344455555533222 123467889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998887765 45555568999999999999865 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999998865
No 452
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=322.76 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=163.8
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g--- 659 (1421)
..++++|.+++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999864 688986 4433
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCCCC----H----HHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~~~----~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++..|++||+.++.... . ++..+.++.+++..++. ...+.++.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcc
Confidence 479999999988889999998763211 1 11222333333322111 22356788
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998887765 55555557899999999998765 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999888765
No 453
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=326.25 Aligned_cols=202 Identities=27% Similarity=0.392 Sum_probs=166.2
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCC---CcEEEECC----
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG---- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~vi~~~g---- 659 (1421)
+..++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++ |++ .++|
T Consensus 3 ~~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~ 75 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLT 75 (282)
T ss_pred CceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECC
Confidence 3468999999999642 2468999 99999999999999999999999999999999987 776 5554
Q ss_pred ---------EEEEEcCCCc--CCCCcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 ---------KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 ---------~iayv~Q~~~--i~~~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|+|. +++.|++|||.|+... .. ++.++.++.+++.. ..+....+|
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~L 144 (282)
T PRK13640 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANL 144 (282)
T ss_pred cCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccC
Confidence 4799999985 5678999999986432 22 22344455555432 234567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhccCEEEEEeCCEEEE
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~ 799 (1421)
|||||||++||||++++|+++||||||++||+.+.+.+.+. +..+. + |+|||++||+++.+..||++++|++|++++
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998888764 44433 3 799999999999987799999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 224 ~g~~~~~~~ 232 (282)
T PRK13640 224 QGSPVEIFS 232 (282)
T ss_pred eCCHHHHhc
Confidence 999888765
No 454
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.5e-33 Score=323.78 Aligned_cols=199 Identities=25% Similarity=0.325 Sum_probs=162.1
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999853 368999 99999999999999999999999999999999999987 5543
Q ss_pred --------EEEEEcCCCcCCC-CcHHHHhccCCC----CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 --------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 --------~iayv~Q~~~i~~-~Ti~enI~fg~~----~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.++|++|++.++. .|++||+.++.. .+.. +..+.++..++.. ....+..+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCC
Confidence 3799999998876 499999987421 2221 1222333333321 2235678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||++||||++.+|+++||||||++||+.+.+.+.+. +..+. + |+|+|++||+++++.. ||+|++|++|++++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988777654 44432 3 7999999999998865 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++.+
T Consensus 225 ~g~~~~~~~ 233 (269)
T PRK11831 225 HGSAQALQA 233 (269)
T ss_pred eCCHHHHhc
Confidence 999988875
No 455
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=321.07 Aligned_cols=202 Identities=23% Similarity=0.370 Sum_probs=163.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc--C---CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+ | ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5889999999963 368999 99999999999999999999999999999853 5 48986 5443
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.+++.|++||+.++... +++ +.+++++.+++...+. +..+..+.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 48999999998889999999875321 111 1222344444332221 224567889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+++ ++....+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888875 45555557999999999998764 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T PRK14239 228 YNDTKQMFM 236 (252)
T ss_pred eCCHHHHHh
Confidence 999988865
No 456
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=319.12 Aligned_cols=202 Identities=25% Similarity=0.365 Sum_probs=163.9
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCC-----CCcEEEEC-----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVH----- 658 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~vi~~~----- 658 (1421)
.++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|. +|++ .++
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5889999999963 358999 9999999999999999999999999999999987 5876 433
Q ss_pred ----------CEEEEEcCCCcCCCCcHHHHhccCCCC----CHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 659 ----------GKKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 659 ----------g~iayv~Q~~~i~~~Ti~enI~fg~~~----~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
..++|++|+|.++..|++||+.++..+ .++. .++.++..++.+.++ +..+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCccc
Confidence 248999999998888999999986432 1111 222223233322111 234577889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++.+
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999998887765 55555568999999999999876 89999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999888765
No 457
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=319.15 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4789999999863 358999 999999999999999999999999999999974 68986 5554
Q ss_pred ---------EEEEEcCCCcC-CCCcHHHHhccCCCC-----CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 ---------KKAYVPQSSWI-QTGTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ---------~iayv~Q~~~i-~~~Ti~enI~fg~~~-----~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|+|-+ ++.|++||+.++... ... +.++.++.+++.+.+. ...+..+.+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 47999999875 567999999876421 111 2233344444432111 123466789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchh-ccCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||+.++|++++|||||++||+.+...+.+. +..+.+++|+|++||+++++. .||+|++|++|++.+
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999988887764 444455899999999999986 499999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 999988765
No 458
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=326.32 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=162.8
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTP---FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCc---cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccc
Confidence 3789999999974300 01368999 99999999999999999999999999999999999987 5544
Q ss_pred --------EEEEEcCCC--cCCCCcHHHHhccCCC---CCHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 --------~iayv~Q~~--~i~~~Ti~enI~fg~~---~~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.++|++|+| .+++.|++||+.++.. .+.+. .+++++..++..+ ....+..+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 147 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELS 147 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 379999997 5677899999987532 22221 2223333333211 1245678999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEe
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~ 800 (1421)
||||||++||||++.+|+++||||||++||+.+.+.+.+. +..+ ..++|||++||+++++.. ||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999988877764 4443 348999999999998865 999999999999999
Q ss_pred cCchhhhh
Q 000560 801 GKYEDLIA 808 (1421)
Q Consensus 801 g~~~~l~~ 808 (1421)
|+.+++.+
T Consensus 227 g~~~~~~~ 234 (280)
T PRK13649 227 GKPKDIFQ 234 (280)
T ss_pred CCHHHHhc
Confidence 99888755
No 459
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.7e-33 Score=320.44 Aligned_cols=198 Identities=28% Similarity=0.399 Sum_probs=161.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+. .+.++| ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 358999 99999999999999999999999999999999999986 4432
Q ss_pred ------------EEEEEcCCCcCCC-CcHHHHhccCC----CCCH----HHHHHHHHHhccchhHHhhcCCCCccccCCC
Q 000560 660 ------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~-~Ti~enI~fg~----~~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g 718 (1421)
.++|++|++.++. .|++||+.++. ..+. ++.++.++..++. ...+.++
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 4799999998764 79999998742 1121 1222333333332 1234577
Q ss_pred CcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCE
Q 000560 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1421)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1421)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..+. +++|+|++||+++++.. ||+|++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999988877764 44433 48999999999999865 99999999999
Q ss_pred EEEecCchhhhh
Q 000560 797 IEQSGKYEDLIA 808 (1421)
Q Consensus 797 i~~~g~~~~l~~ 808 (1421)
+++.|+.+++.+
T Consensus 222 i~~~~~~~~~~~ 233 (250)
T PRK11264 222 IVEQGPAKALFA 233 (250)
T ss_pred EEEeCCHHHHhc
Confidence 999999888765
No 460
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.6e-33 Score=314.61 Aligned_cols=191 Identities=30% Similarity=0.379 Sum_probs=153.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 67899999996420 12468999 99999999999999999999999999999999999987 5543
Q ss_pred -------EEEEEcCCCcCC-CCcHHHHhccCCC---CCHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 -------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 -------~iayv~Q~~~i~-~~Ti~enI~fg~~---~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++|++|++.++ +.|++||+.++.. ++.. +..+.++.+++.. .....+.+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHH
Confidence 489999999876 4699999987422 2221 2233334333321 234566899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEeCCEEE
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~ 798 (1421)
||||++||||++.+|+++||||||++||+++...+.+. +..+. .++|+|++||+++++..+|+|++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988877764 44442 379999999999998789999999999975
No 461
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=320.69 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=163.0
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccccc
Confidence 46899999999963 358999 99999999999999999999999999999999999986 4543
Q ss_pred ------------------EEEEEcCCCcCCC-CcHHHHhccCC----CCCH----HHHHHHHHHhccchhHHhhcCCCCc
Q 000560 660 ------------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLS 712 (1421)
Q Consensus 660 ------------------~iayv~Q~~~i~~-~Ti~enI~fg~----~~~~----~~y~~v~~~c~l~~dl~~~~~gd~t 712 (1421)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3799999998875 59999998742 1221 1222233333322111
Q ss_pred cccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEE
Q 000560 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1421)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~ 790 (1421)
.+..+.+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. .|+|+|++||+++++.. ||+|+
T Consensus 146 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 135678999999999999999999999999999999999999888876 444443 58999999999999886 99999
Q ss_pred EEeCCEEEEecCchhhhh
Q 000560 791 VMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~ 808 (1421)
+|++|++++.|+++++..
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999888764
No 462
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-33 Score=311.44 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=153.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++++|+.. . .+ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4688999998632 1 27 99999999999999999999999999999999999997 6665
Q ss_pred -EEEEEcCCCcCCC-CcHHHHhccCCCC-------CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 -~iayv~Q~~~i~~-~Ti~enI~fg~~~-------~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
.++|++|++.++. .|++||+.++... .+++.+++++.+++... ......+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL-----------EKRLPGELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHH
Confidence 3799999998875 5999999876431 12233444555544322 23456789999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||||++.+|+++||||||++||+++...+.+. +..+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998877664 44443 37999999999999876 9999999999998654
No 463
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-34 Score=361.11 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=169.3
Q ss_pred cEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCC----------
Q 000560 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS---------- 1274 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~---------- 1274 (1421)
-|+++|++++|+.. ..++|+||||++++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---HHh-cccEEEccCC--cccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000560 1275 MIGLQ---DLR-SRLSIIPQDP--MLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339 (1421)
Q Consensus 1275 ~i~l~---~LR-~~i~iIpQdp--~LF~-gTIR~NLdp~----~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~ 1339 (1421)
+.+.. .+| ++|++|+|+| .++. -||++|+... ...+ ++++.++|+.+++.+.- .-++..+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~~~~- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILSRYP- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHhCCC-
Confidence 22222 344 4799999999 5666 4999998631 1122 24566778887774210 0123333
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEe
Q 000560 1340 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD 1416 (1421)
Q Consensus 1340 e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~ 1416 (1421)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||||++|+
T Consensus 167 ---~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 167 ---HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4699999999999999999999999999999999999999999999864 27899999999999865 99999999
Q ss_pred CCeeC
Q 000560 1417 EGKLK 1421 (1421)
Q Consensus 1417 ~G~Iv 1421 (1421)
+|+|+
T Consensus 244 ~G~i~ 248 (623)
T PRK10261 244 QGEAV 248 (623)
T ss_pred CCeec
Confidence 99985
No 464
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-33 Score=318.38 Aligned_cols=197 Identities=22% Similarity=0.328 Sum_probs=162.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999863 358999 99999999999999999999999999999999999987 5544
Q ss_pred ----EEEEEcCCCcCCCC-cHHHHhccCCCCC---------------HHHHHHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~-Ti~enI~fg~~~~---------------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++.. |++||+.++...+ +++.++.++..++. .....+..
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChh
Confidence 37999999988764 9999998863211 11122222222221 23446778
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999998887765 45555557999999999999875 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999888754
No 465
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=321.27 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=167.8
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC--
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g-- 659 (1421)
...++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (267)
T PRK14237 18 EIALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGID 88 (267)
T ss_pred CeEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEE
Confidence 346999999999953 368999 99999999999999999999999999999986 478986 4443
Q ss_pred -------------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCC
Q 000560 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1421)
Q Consensus 660 -------------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g 718 (1421)
.++|++|++.++..|++||+.++... ++ ++..++++.+++.+++. +..++.+
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~ 161 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSA 161 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCc
Confidence 37999999998888999999886321 11 22344455555543332 2345778
Q ss_pred CcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
.+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||++++|++|++
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999998877765 45555567999999999998864 999999999999
Q ss_pred EEecCchhhhh
Q 000560 798 EQSGKYEDLIA 808 (1421)
Q Consensus 798 ~~~g~~~~l~~ 808 (1421)
++.|+.+++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988865
No 466
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8e-31 Score=306.22 Aligned_cols=337 Identities=19% Similarity=0.251 Sum_probs=235.5
Q ss_pred HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCHH
Q 000560 1070 SESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL------PRSAIDPS 1143 (1421)
Q Consensus 1070 ~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~------~~~~~~~~ 1143 (1421)
++-..+.+.|--|+.++......++..+..............|+.+..+.+--+.. ++..+++.. +.+..+|+
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~-ilsy~vi~~p~Fs~h~y~~~s~a 347 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGG-ILSYVVIAIPFFSGHVYDDLSPA 347 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeeEEeeeeecccccCCcCHH
Confidence 44456677777777765544444444444333334445566677777666552221 111111111 22334454
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC----C-------------CCCccccC-CCCCCCC
Q 000560 1144 LAGLAA----TYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI----P-------------SEAPLVIK-NSRPSPE 1201 (1421)
Q Consensus 1144 ~~gl~l----~~~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~----~-------------~E~~~~~~-~~~~~~~ 1201 (1421)
..--.+ .+.+.+...+..++....++..-..-..||-|+++. . .|..+... .+..+..
T Consensus 348 EL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~ 427 (659)
T KOG0060|consen 348 ELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKA 427 (659)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccc
Confidence 322111 122222233333333333333333345677776531 1 11111100 0112456
Q ss_pred CCCCCcEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCChHHH
Q 000560 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1421)
Q Consensus 1202 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1281 (1421)
||.+..|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||||||||++.|.|+.+..+|++.--...-.
T Consensus 428 ~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------- 500 (659)
T KOG0060|consen 428 EPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------- 500 (659)
T ss_pred ccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-------
Confidence 7888889999999998776677778899999999999999999999999999999999999999876432111
Q ss_pred hcccEEEccCCccccccHhhhcC-CC-------CCCCHHHHHHHHHHcCcHHHHHhcccccCcccc-CCCCCCChhHHHH
Q 000560 1282 RSRLSIIPQDPMLFQGTVRTNLD-PL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA-EDGENWSVGQRQL 1352 (1421)
Q Consensus 1282 R~~i~iIpQdp~LF~gTIR~NLd-p~-------~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~-e~G~nLSgGQrQr 1352 (1421)
+.+=++||.|++-.||+|+-+- |. +..+|++|.+.|+.++|.+.+.. .+|+|.++. +=.+-||+||+||
T Consensus 501 -~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHH
Confidence 4589999999999999999974 42 24689999999999999988765 589997764 3456799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhccCEEEEEeCC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEG 1418 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G 1418 (1421)
+|+||.++.+|++-+|||+||+||.+.|..+-+.+|+ .+-|.|+|.||-+.-+.-|.++-|+.+
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999998 488999999999888889999999853
No 467
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=320.21 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=161.7
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 788999999863 368999 99999999999999999999999999999999999987 6655
Q ss_pred ---EEEEEcCCCcCCCC-cHHHHhccCCC-----C---CH---HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChH
Q 000560 660 ---KKAYVPQSSWIQTG-TIRENILFGKD-----M---RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1421)
Q Consensus 660 ---~iayv~Q~~~i~~~-Ti~enI~fg~~-----~---~~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGG 724 (1421)
.++|++|++.++.. |+.||+.++.. + .+ ++.+++++.+++.. .....+..||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHH
Confidence 37999999877654 99999998631 1 11 12233334333321 223567899999
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 725 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++...|++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCH
Confidence 9999999999999999999999999999998887766443322358999999999999765 999999999999999998
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++..
T Consensus 223 ~~~~~ 227 (255)
T PRK11231 223 EEVMT 227 (255)
T ss_pred HHhcC
Confidence 88764
No 468
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=323.14 Aligned_cols=202 Identities=27% Similarity=0.413 Sum_probs=164.5
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|.+++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999632 2468999 99999999999999999999999999999999999987 5544
Q ss_pred -----EEEEEcCCCc--CCCCcHHHHhccCCC---CCHHH----HHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~~--i~~~Ti~enI~fg~~---~~~~~----y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|+|. +++.|++||+.++.. ++.+. .+++++..++.. ..+.+..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHH
Confidence 3799999984 567899999988632 22222 233344444432 2335678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
|||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||+|++|++|++.+.|+.+
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999888887644333333 58999999999988789999999999999999888
Q ss_pred hhhh
Q 000560 805 DLIA 808 (1421)
Q Consensus 805 ~l~~ 808 (1421)
++.+
T Consensus 228 ~~~~ 231 (271)
T PRK13632 228 EILN 231 (271)
T ss_pred HHhc
Confidence 7754
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-33 Score=316.30 Aligned_cols=198 Identities=27% Similarity=0.436 Sum_probs=160.1
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|+++.|+. .+.++| ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468899999863 368999 99999999999999999999999999999999999987 5543
Q ss_pred ----EEEEEcCCCcCCCC-cHHHHhccCCCCC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHH
Q 000560 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1421)
Q Consensus 660 ----~iayv~Q~~~i~~~-Ti~enI~fg~~~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~ 730 (1421)
.++|++|++.++.. |++||+.++.... .+.++++++.... + ....+.+..+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHH
Confidence 37999999987764 9999998764321 1222333332221 1 11234677899999999999
Q ss_pred HHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhh
Q 000560 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1421)
Q Consensus 731 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 807 (1421)
||||++++|+++||||||++||+.+...+.+.+.+... .++|+|++||+++++.. ||+|+++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999988877764433222 37999999999999875 9999999999999999988873
No 470
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-33 Score=351.08 Aligned_cols=202 Identities=24% Similarity=0.389 Sum_probs=169.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC--CccEEEEcCeeCCCCChHH-Hhcc
Q 000560 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRSR 1284 (1421)
Q Consensus 1208 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~~ 1284 (1421)
|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred cEEEccCCccccc-cHhhhcCCCCC-------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000560 1285 LSIIPQDPMLFQG-TVRTNLDPLEQ-------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352 (1421)
Q Consensus 1285 i~iIpQdp~LF~g-TIR~NLdp~~~-------~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1352 (1421)
++|+||+|.+|.. |+++|+..... .. ++++.++++..++.+.. .+.++ ..||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHHH
Confidence 9999999988865 99999864211 11 12345566666553210 12333 4699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1353 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1353 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 999999999999999999999999999999999998753 47899999999999875 9999999999974
No 471
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=326.71 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=161.7
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~~l~i~nl~~~~~~~~~---~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP---FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCc---cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccccc
Confidence 35899999999964300 01358999 99999999999999999999999999999999999987 4433
Q ss_pred ----------EEEEEcCCCc--CCCCcHHHHhccCCCC---CHH-H---HHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 ----------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS-F---YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ----------~iayv~Q~~~--i~~~Ti~enI~fg~~~---~~~-~---y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|+|. ++..|++||+.|+... ..+ . .++.++..++.. ...+..+.+
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~ 150 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFE 150 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhh
Confidence 3799999984 4567999999986421 111 1 112222222211 123467789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998877765 444433 37999999999998765 999999999999
Q ss_pred EEecCchhhhh
Q 000560 798 EQSGKYEDLIA 808 (1421)
Q Consensus 798 ~~~g~~~~l~~ 808 (1421)
++.|+.+++..
T Consensus 230 ~~~g~~~~~~~ 240 (289)
T PRK13645 230 ISIGSPFEIFS 240 (289)
T ss_pred EEeCCHHHHhc
Confidence 99999888754
No 472
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=320.21 Aligned_cols=199 Identities=19% Similarity=0.304 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|+++.|+. .+.+++ ||++++|++++|+||||||||||+++|.|+++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999853 368999 99999999999999999999999999999999999987 6654
Q ss_pred -----EEEEEcCCCcCCC-CcHHHHhccCCCC----------------CH------HHHHHHHHHhccchhHHhhcCCCC
Q 000560 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------------RQ------SFYEEVLEGCALNQDIEMWADGDL 711 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~-~Ti~enI~fg~~~----------------~~------~~y~~v~~~c~l~~dl~~~~~gd~ 711 (1421)
.++|++|+|.++. .|++||+.++... ++ ++.++.++..++ .
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------L 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------h
Confidence 2689999998876 5999999986310 00 111122222222 1
Q ss_pred ccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCccchhc-cCEE
Q 000560 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLV 789 (1421)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~D~i 789 (1421)
...+.++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+ ++|+|++||+++++.. ||++
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 2345678899999999999999999999999999999999999888776644332233 7899999999999865 9999
Q ss_pred EEEeCCEEEEecCchhhhh
Q 000560 790 LVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 790 ~~l~~G~i~~~g~~~~l~~ 808 (1421)
++|++|++++.|+.+++..
T Consensus 225 ~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEECCeEEecCCHHHHhh
Confidence 9999999999999887754
No 473
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=319.99 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=165.9
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g--- 659 (1421)
..++++|++++|+. .+.++| ||++++||+++|+|+||||||||+++|+|..+ |++|++ .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 368999 99999999999999999999999999999875 378986 5443
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCCCC------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~~~------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|++.+++.|++||+.++.... +++.+++++.+++..++.. ..+.++.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccC
Confidence 379999999888789999998864321 1223334455555433321 234678899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEe-------
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~------- 793 (1421)
|||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999998887765 55555557899999999999865 99999998
Q ss_pred --CCEEEEecCchhhhh
Q 000560 794 --DGKIEQSGKYEDLIA 808 (1421)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1421)
+|++++.|+.+++.+
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999998865
No 474
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.6e-33 Score=328.97 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=169.5
Q ss_pred CccEEEEeeEEEeCCcccc-----cCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--
Q 000560 588 DVAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~-----~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-- 659 (1421)
+..++++|.+.+++..... .......++| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEE
Confidence 4568999999998642100 0012457899 99999999999999999999999999999999999987 5543
Q ss_pred --------------EEEEEcCCCc--CC-CCcHHHHhccCC-----CCCHH----HHHHHHHHhccchhHHhhcCCCCcc
Q 000560 660 --------------KKAYVPQSSW--IQ-TGTIRENILFGK-----DMRQS----FYEEVLEGCALNQDIEMWADGDLSV 713 (1421)
Q Consensus 660 --------------~iayv~Q~~~--i~-~~Ti~enI~fg~-----~~~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ 713 (1421)
.++||+|+|. ++ ..||.|||.++. ..+++ +.++.++..++.++ .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------L 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------H
Confidence 4899999983 43 679999997642 12322 22334444444221 2
Q ss_pred ccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhc-cCEEE
Q 000560 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVL 790 (1421)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~D~i~ 790 (1421)
.+.++.+|||||||||+||||++.+|+++|+||||++||+.+...+.+. +..+. .+.|+|+||||++.+.. ||+|+
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3467789999999999999999999999999999999999998888764 44433 38999999999999875 99999
Q ss_pred EEeCCEEEEecCchhhhhhhhhHHHH
Q 000560 791 VMKDGKIEQSGKYEDLIADQNSELVR 816 (1421)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1421)
+|++|+|++.|+.+++.++....+.+
T Consensus 234 vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 234 VMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999987644444443
No 475
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=318.01 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=163.5
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.++| ||++++||+++|+||||||||||+++|+|..++ ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4789999999963 358899 999999999999999999999999999998763 68986 5543
Q ss_pred -----------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.+++.|++||+.++... .. ++.++.++.+++..++. ...+..+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 47999999988779999999986421 11 12223334444332222 123467889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~ 799 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998877765 55555568999999999998765 99999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999888764
No 476
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=318.31 Aligned_cols=197 Identities=26% Similarity=0.437 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 788999999863 358999 99999999999999999999999999999999999987 6655
Q ss_pred ---EEEEEcCCCcC-CCCcHHHHhccCCCCC-------HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ---KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ---~iayv~Q~~~i-~~~Ti~enI~fg~~~~-------~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
.++|++|++.+ ++.|++||+.++.... +++.++.++..++.. ..+....+||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHH
Confidence 37999999877 6789999998864211 122333444444322 2235678999999999
Q ss_pred HHHHHHhc------cCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchh-ccCEEEEEeCCEEEE
Q 000560 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1421)
Q Consensus 729 v~LARAl~------~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~ 799 (1421)
++||||++ .+|+++||||||++||+.+.+.+.+ ++..+. +++|||++||+++++. .||+|++|++|++++
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999 5999999999999999998887765 444443 5899999999999987 499999999999999
Q ss_pred ecCchhhhh
Q 000560 800 SGKYEDLIA 808 (1421)
Q Consensus 800 ~g~~~~l~~ 808 (1421)
.|+++++..
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 999888764
No 477
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-33 Score=334.06 Aligned_cols=188 Identities=31% Similarity=0.444 Sum_probs=156.0
Q ss_pred cccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------------------EEEEEcCCC
Q 000560 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1421)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------------------~iayv~Q~~ 668 (1421)
...++| ||++++||+++|+|+||||||||+++|+|+++|++|++ .++| .++|++|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456888 99999999999999999999999999999999999987 6654 389999999
Q ss_pred cCCC-CcHHHHhccCCCC---CH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCC
Q 000560 669 WIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1421)
Q Consensus 669 ~i~~-~Ti~enI~fg~~~---~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1421)
.++. .|++||+.++..+ ++ ++.++.++..+|... ......+||||||||++||||++.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9875 7999999987432 22 223344444444322 235667899999999999999999999
Q ss_pred EEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchh-ccCEEEEEeCCEEEEecCchhhhhhh
Q 000560 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQ 810 (1421)
Q Consensus 741 illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~~ 810 (1421)
|+|||||||+||+.+.+.+.+.+..... .++|+|++|||++++. .||+|++|++|++++.|+.+++...+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 9999999999999998888776554333 3899999999999875 59999999999999999999987633
No 478
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=319.03 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=162.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC----
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g---- 659 (1421)
.++++|++++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4789999999863 358999 999999999999999999999999999999987 48986 5543
Q ss_pred -----------EEEEEcCCCcCCC-CcHHHHhccCCCC-----CHH----HHHHHHHHhccchhHHhhcCCCCccccCCC
Q 000560 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1421)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Ti~enI~fg~~~-----~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g 718 (1421)
.++|++|++.++. .|++||+.++... ..+ +.+++++..++..+++ ...+.++
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 4799999998875 5999999875321 111 1222333333322221 1234678
Q ss_pred CcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+. +....+++|+|++||+++++.. ||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL-LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999988877764 4444457999999999999765 999999999999
Q ss_pred EEecCchhhhh
Q 000560 798 EQSGKYEDLIA 808 (1421)
Q Consensus 798 ~~~g~~~~l~~ 808 (1421)
++.|+.+++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999988765
No 479
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=320.48 Aligned_cols=202 Identities=19% Similarity=0.270 Sum_probs=164.6
Q ss_pred CCccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC------
Q 000560 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1421)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------ 659 (1421)
+...++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~ 74 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHY 74 (265)
T ss_pred cccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhC
Confidence 3457999999999963 358999 99999999999999999999999999999999999987 6655
Q ss_pred -------EEEEEcCCCcCC-CCcHHHHhccCC-CC-------CH---HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 -------KKAYVPQSSWIQ-TGTIRENILFGK-DM-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 -------~iayv~Q~~~i~-~~Ti~enI~fg~-~~-------~~---~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++-++ +.|++||+.++. +. .+ ++.+++++..++.+ ....++.+
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~ 143 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-----------LADQSVDT 143 (265)
T ss_pred CHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCccc
Confidence 379999998775 579999998752 11 11 12333344333321 13356789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+.+..... .++|+|++||+++.+.. ||+|++|++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888764433222 37899999999998765 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++..
T Consensus 224 ~~g~~~~~~~ 233 (265)
T PRK10253 224 AQGAPKEIVT 233 (265)
T ss_pred EeCCHHHHhh
Confidence 9999888764
No 480
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.8e-33 Score=287.74 Aligned_cols=192 Identities=29% Similarity=0.380 Sum_probs=162.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
|+++|++-.|+.. .+.|+| ||+|++||++-++||+|||||||+++|.++..|+.|++ .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 6788888888753 578999 99999999999999999999999999999999999997 5554
Q ss_pred ------EEEEEcCCCcC-CCCcHHHHhccCCCC---C----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWI-QTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i-~~~Ti~enI~fg~~~---~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
+||+|+|+--+ ...||.||+.|.... . +++..++++..+|......+| .+|||||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchH
Confidence 58999999765 678999999997542 2 244455667777776665554 5899999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEec
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g 801 (1421)
||||+||||+..+|+++|-||||-+|||..+..|++...+--..|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999987443334569999999999999876 6889999999998654
No 481
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-33 Score=313.44 Aligned_cols=187 Identities=25% Similarity=0.392 Sum_probs=151.6
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|.+++|+.+ .+.++| ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6789999998522 368999 99999999999999999999999999999999999987 5543
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+. ......+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 4799999998874 699999987532 11 1233444444444322 224567999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCE
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1421)
|||++||||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||++++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999888776443322358999999999999876 99999999985
No 482
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-33 Score=312.78 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=151.8
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4678999998532 358999 99999999999999999999999999999999999987 5554
Q ss_pred ------EEEEEcCCCcCCC-CcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++. .|++||+.++.. ... ++.++.++.+++... ......+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHH
Confidence 3799999998775 699999987632 111 123344444444321 234567999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
|||++||||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++++.. ||++++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887776443322358999999999999875 999999999974
No 483
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.8e-33 Score=315.68 Aligned_cols=195 Identities=31% Similarity=0.427 Sum_probs=153.0
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC----------
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g---------- 659 (1421)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 5543
Q ss_pred ------EEEEEcCCCc--C-CCCcHHHHhccCCCC-----CHHHHH----HHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 ------KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 ------~iayv~Q~~~--i-~~~Ti~enI~fg~~~-----~~~~y~----~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|+|. + ...|++||+.++... +++..+ +.++..++. ....+.++.+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 4899999983 3 357999999864211 111111 222222221 12345677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchh-ccCEEEEEeCCEEE
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~D~i~~l~~G~i~ 798 (1421)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.... + ++|+|++||+++.+. .||+|++|++|++.
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL-LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 99999999999999999999999999999999988777664 44443 3 799999999999987 49999999999998
Q ss_pred Eec
Q 000560 799 QSG 801 (1421)
Q Consensus 799 ~~g 801 (1421)
+.|
T Consensus 226 ~~g 228 (228)
T cd03257 226 EEG 228 (228)
T ss_pred ecC
Confidence 654
No 484
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=8.7e-30 Score=308.02 Aligned_cols=435 Identities=19% Similarity=0.223 Sum_probs=299.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--ChH------HHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000560 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLYIHR-IWLLPVQVFLALVI 408 (1421)
Q Consensus 338 ~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~--~~G------~ivnlms~D~~ri~~~~~~~h~-~w~~plqi~~al~l 408 (1421)
..|..+++.++.|.-|+..+.+|=|.-...-+ ..| ..=..++.|+..+.+....+-. +.-..++++-=..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999886553322 222 2235677777776665443332 22333344444456
Q ss_pred HHHHhhhHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHhcc
Q 000560 409 LYKNLGAAP---------AFAALF--STIFVMVSNTPLANRQERFHSMIME-----AKDARIKATSETLKSMRVLKLLSW 472 (1421)
Q Consensus 409 L~~~lG~~a---------~l~gl~--~~~~~~~~~~~~~~~~~~~q~~~m~-----~~D~Rv~~~sE~L~~ik~IK~~~w 472 (1421)
||..-| .. .++|.. ++++..++...++-+.++--.++.. .-|=|-.+ ..+.++-..|-+|+-
T Consensus 186 Lw~lsg-~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L-vrv~enaE~IAly~G 263 (604)
T COG4178 186 LWSLSG-GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL-VRVRENAEAIALYRG 263 (604)
T ss_pred HHHccC-cceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH-HHHHhhHHHHHHhcC
Confidence 775544 22 122221 2223333333333222222122222 22334333 356678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000560 473 EQEFLKKLLRLREIERDSLKKYL----YTCSAIAFLFWA---SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1421)
Q Consensus 473 E~~f~~~I~~~R~~El~~l~~~~----~~~~~~~~~~~~---~p~~v~~~tF~~~~~~~~~L~~~~vft~lalf~~l~~p 545 (1421)
|+.-++++.+.=..=++..++.. .+..+.....++ .|.++.+- .+..+.++-+.+.++-..|+.+...
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap-----~~f~g~i~~G~lmqa~~aF~~v~ss 338 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAP-----RYFSGQITFGGLMQAVGAFGQVHSS 338 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccH-----hhhcCcChHHHHHHHHHHHHHHHHH
Confidence 98766655543222222111111 011111112222 22222111 2356779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCC-C------CCCCccEEEEeeEEEeCCcccccCCCcccccC
Q 000560 546 IYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKPITEPT-S------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616 (1421)
Q Consensus 546 l~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~~~~~~~-~------~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~ 616 (1421)
++.+-+.+..+.+=+.++.|+.+|-.+-| +.+...... . +..+..|.++|.+..-++. .+.+++
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~ 411 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSE 411 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeecc
Confidence 99999999999999999999999985433 111100000 0 1115679999999987654 477888
Q ss_pred -ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEEC-C-EEEEEcCCCcCCCCcHHHHhccCCC---CCHHHH
Q 000560 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFY 690 (1421)
Q Consensus 617 -nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~-g-~iayv~Q~~~i~~~Ti~enI~fg~~---~~~~~y 690 (1421)
|+.+++||.+.|.|++|||||||+++|.|.-|--+|++ ..+ + .+-|+||.|.++.||.||-|.+... +.++.+
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 99999999999999999999999999999999999987 444 3 4799999999999999999999753 567889
Q ss_pred HHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCC
Q 000560 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770 (1421)
Q Consensus 691 ~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~ 770 (1421)
.+++..|+|.+-.+.+.+.+ .=...||||||||+++||.++++|++++|||.|||||+.+...+++ .+++.+.+
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~ 564 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPD 564 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCC
Confidence 99999999998887766544 2346899999999999999999999999999999999999888876 56777789
Q ss_pred cEEEEEcCCccchhccCEEEEEe
Q 000560 771 KTVLYTTHQLEFLDAADLVLVMK 793 (1421)
Q Consensus 771 ~tvilvtH~~~~l~~~D~i~~l~ 793 (1421)
.|+|-|.|+.......++.+.+.
T Consensus 565 ~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 565 ATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CEEEEeccchhhHHHHhhheeec
Confidence 99999999988777766666554
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=316.21 Aligned_cols=198 Identities=22% Similarity=0.383 Sum_probs=161.2
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG--------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3788999999853 368999 99999999999999999999999999999999999987 5554
Q ss_pred -----EEEEEcCCCcCCC-CcHHHHhccCCCC----CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHH
Q 000560 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~-~Ti~enI~fg~~~----~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQ 725 (1421)
.++|++|++.++. .|++||+.++... +.+ +.++.++..++. .....+..+|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHH
Confidence 3799999988765 6999999876322 111 222233322221 22346678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCc
Q 000560 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1421)
Q Consensus 726 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~ 803 (1421)
|||++||||++.+|+++||||||++||+.+...+.+ ++..+. +|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 999999999999999999999999999998877765 444433 58999999999988765 999999999999999998
Q ss_pred hhhhh
Q 000560 804 EDLIA 808 (1421)
Q Consensus 804 ~~l~~ 808 (1421)
+++.+
T Consensus 222 ~~~~~ 226 (241)
T PRK10895 222 TEILQ 226 (241)
T ss_pred HHHhc
Confidence 88764
No 486
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=349.39 Aligned_cols=199 Identities=20% Similarity=0.354 Sum_probs=165.8
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCeeCCCCCh-HHHhcccEEE
Q 000560 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRLSII 1288 (1421)
Q Consensus 1210 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i~iI 1288 (1421)
++|++++|++ ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 359999999999999999999999999999999999999999999999999976654 3467889999
Q ss_pred ccCCcccc-ccHhhhcCCCC----C--CCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000560 1289 PQDPMLFQ-GTVRTNLDPLE----Q--HSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1357 (1421)
Q Consensus 1289 pQdp~LF~-gTIR~NLdp~~----~--~sde----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1357 (1421)
||++.+|. .|+++|+.... . .+.+ ++.++++.+++. ........+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 99998775 49999997421 1 1222 234445544442 2223334579999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1358 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1358 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998853 47899999999999865 9999999999974
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-33 Score=311.95 Aligned_cols=186 Identities=31% Similarity=0.445 Sum_probs=149.6
Q ss_pred EEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC------------
Q 000560 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1421)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------------ 659 (1421)
++|++++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~~~l~~~~~~~------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPDG------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEecCCC------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccCCHHHHH
Confidence 57888888642 2468999 99999999999999999999999999999999999987 6654
Q ss_pred -EEEEEcCCCc--CCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHH
Q 000560 660 -KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1421)
Q Consensus 660 -~iayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv 729 (1421)
.++|++|++. +++.|++||+.++.. .+. ++.++.++..++.. ...++..+||||||||+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 143 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-----------LRDRSPFTLSGGQKQRV 143 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHH
Confidence 3799999983 567899999987532 221 12233344333322 23356789999999999
Q ss_pred HHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCE
Q 000560 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1421)
Q Consensus 730 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~ 796 (1421)
+||||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||+|++|++|+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999888876543333348999999999999876 99999999985
No 488
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-33 Score=320.56 Aligned_cols=200 Identities=24% Similarity=0.335 Sum_probs=163.1
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
+..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 9 ~~~l~i~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTFALRNVSFRVPG--------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWS 79 (265)
T ss_pred CceEEEeeEEEEECC--------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCC
Confidence 346999999999963 368999 99999999999999999999999999999999999987 6665
Q ss_pred ------EEEEEcCCCcCC-CCcHHHHhccCCC--------CC---HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcC
Q 000560 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1421)
Q Consensus 660 ------~iayv~Q~~~i~-~~Ti~enI~fg~~--------~~---~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~L 721 (1421)
.++|++|++-++ ..|+.||+.++.. .. .++.++.++.+++.. .......+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 148 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSL 148 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccC
Confidence 379999997654 5699999987631 11 122334444444432 123456789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
|||||||++||||+..+|+++||||||++||+.+.+.+.+ ++..+ . .++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999998877765 44444 3 37999999999999865 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+.+++..
T Consensus 228 ~~~~~~~~~~ 237 (265)
T PRK10575 228 AQGTPAELMR 237 (265)
T ss_pred EecCHHHhcC
Confidence 9999888764
No 489
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-33 Score=297.62 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=142.4
Q ss_pred EEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--EEEEEcCC
Q 000560 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1421)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--~iayv~Q~ 667 (1421)
++++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .+++ .++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4688999999632 368999 99999999999999999999999999999999999997 7766 79999999
Q ss_pred CcCCCCcHHHHhccCCCCCHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCC
Q 000560 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1421)
Q Consensus 668 ~~i~~~Ti~enI~fg~~~~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 747 (1421)
+.+++.|++||+.++ ++.+||||||||++||||++++|++++||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 998889999999764 2468999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhccCEEEEEeCC
Q 000560 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1421)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~D~i~~l~~G 795 (1421)
|++||+++.+.+.+. +... ++|+|++||+.+....||++++|++|
T Consensus 119 t~~LD~~~~~~l~~~-l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLYQL-LKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHHHH-HHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999998877664 4443 68999999999887779999999875
No 490
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-33 Score=313.32 Aligned_cols=197 Identities=24% Similarity=0.376 Sum_probs=159.3
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC-------
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------- 659 (1421)
+..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~ 75 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLK 75 (225)
T ss_pred CceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCC
Confidence 346899999999853 358999 99999999999999999999999999999999999987 5654
Q ss_pred ------EEEEEcCCCcCCCCcHHHHhccCCCC-----CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHH
Q 000560 660 ------KKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1421)
Q Consensus 660 ------~iayv~Q~~~i~~~Ti~enI~fg~~~-----~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqR 728 (1421)
.++|++|++.+++.|++||+.++..+ ++++.++.++.+++.. +..+.++.+||||||||
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQR 145 (225)
T ss_pred HHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHH
Confidence 37999999998888999999874321 1222333444443321 22356788999999999
Q ss_pred HHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEe-CCEEEEecCch
Q 000560 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1421)
Q Consensus 729 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~-~G~i~~~g~~~ 804 (1421)
++||||++++|+++||||||++||+.+...+.+ ++..+. .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998776665 454443 3789999999999988899999995 66666677764
No 491
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=315.98 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=160.0
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccc
Confidence 3788999999963 358999 99999999999999999999999999999999999987 5543
Q ss_pred ----------EEEEEcCCCcCCC-CcHHHHhccCC-C---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCc
Q 000560 660 ----------KKAYVPQSSWIQT-GTIRENILFGK-D---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1421)
Q Consensus 660 ----------~iayv~Q~~~i~~-~Ti~enI~fg~-~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~ 720 (1421)
.++|++|++.++. .|++||+.++. . ... ++..+.++..++. ...+....+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~ 141 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-----------PYADRFPLH 141 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhh
Confidence 3799999998765 59999997431 1 111 1122223333222 234456789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+. +++|+|++||+++++.. ||++++|++|+++
T Consensus 142 LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999998887776 454443 48999999999999865 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+++++.+
T Consensus 221 ~~~~~~~~~~ 230 (242)
T PRK11124 221 EQGDASCFTQ 230 (242)
T ss_pred EeCCHHHhcC
Confidence 9999887653
No 492
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-33 Score=314.62 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=160.9
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK--------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC--------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEecCCCCHH
Confidence 4889999999853 368999 99999999999999999999999999999999999987 5554
Q ss_pred -----EEEEEcCCCcCCC-CcHHHHhccCCCC-CHHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHH
Q 000560 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1421)
Q Consensus 660 -----~iayv~Q~~~i~~-~Ti~enI~fg~~~-~~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LA 732 (1421)
.++|++|++.++. .|++||+.++... .....++.++.. ++.++..+. ....+..+||||||||++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----l~~~~~l~~-~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHE-RRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHH-----HHHHHHHHH-HHhCchhhCCHHHHHHHHHH
Confidence 3799999988776 5999999886432 111122111110 111110110 12346779999999999999
Q ss_pred HHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhh
Q 000560 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 733 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998887776443323358999999999998754 99999999999999999988864
No 493
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.9e-33 Score=313.00 Aligned_cols=195 Identities=26% Similarity=0.363 Sum_probs=156.6
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC--------
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g-------- 659 (1421)
..++++|.+++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~~ 79 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE----HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV-SLVGQPLHQMDE 79 (228)
T ss_pred ceEEEeeeEEEccCCC----cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE-EECCEEcccCCH
Confidence 3589999999997430 11358999 99999999999999999999999999999999999987 5443
Q ss_pred ---------EEEEEcCCCcCCC-CcHHHHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCC
Q 000560 660 ---------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1421)
Q Consensus 660 ---------~iayv~Q~~~i~~-~Ti~enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LS 722 (1421)
.++|++|++.++. .|++||+.++.. .+ +++.++.++.+++.+. ...+..+||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 148 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKR-----------LDHLPAQLS 148 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCC
Confidence 4899999998765 599999987421 11 1233444555544322 234567899
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhh-c-CCcEEEEEcCCccchhccCEEEEEeCCEEEEe
Q 000560 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1421)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~ 800 (1421)
||||||++||||++.+|+++||||||++||+.+...+.+. +..+ . .++|||++||+++++..||++++|++|++.+.
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999988777664 4443 3 37899999999998877999999999999753
No 494
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-33 Score=353.10 Aligned_cols=207 Identities=25% Similarity=0.400 Sum_probs=170.8
Q ss_pred cEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCeeCCCCChH
Q 000560 1207 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQ 1279 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p-----~~G~I~IDG~dI~~i~l~ 1279 (1421)
-|+++|++++|+.+ ...+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23699999999999999999999999999999999999987 799999999999877654
Q ss_pred H---Hh-cccEEEccCCc--ccc-ccHhhhcCC----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000560 1280 D---LR-SRLSIIPQDPM--LFQ-GTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344 (1421)
Q Consensus 1280 ~---LR-~~i~iIpQdp~--LF~-gTIR~NLdp----~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1344 (1421)
+ .| ++++|+||+|. ++. -|+++|+.. ....+ .+++.++++.+++.+... -+|..+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~----~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----RLTDYP----HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH----HHhhCC----cc
Confidence 3 34 57999999985 443 489998752 11122 245677888888753211 123333 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1345 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1345 LSgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
||||||||++|||||+.+|++|+||||||+||+.+...+.+.|++.. .++|||+|+|+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998853 37899999999999865 9999999999974
No 495
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.6e-33 Score=328.62 Aligned_cols=185 Identities=26% Similarity=0.380 Sum_probs=153.8
Q ss_pred cccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC------------EEEEEcCCCcCCC-CcHH
Q 000560 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQT-GTIR 676 (1421)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g------------~iayv~Q~~~i~~-~Ti~ 676 (1421)
.+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| .++|+||++.++. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 467899 99999999999999999999999999999999999997 6665 3799999988765 5999
Q ss_pred HHhccCCC---CC----HHHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHHHHHHHHHHhccCCCEEEeeCCCC
Q 000560 677 ENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1421)
Q Consensus 677 enI~fg~~---~~----~~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 749 (1421)
||+.+... .. .++.+++++.+++... ...+..+||||||||++||||++++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987422 11 1234445555544321 235678999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCccchhc-cCEEEEEeCCEEEEecCchhhhh
Q 000560 750 AVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1421)
Q Consensus 750 aLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 808 (1421)
+||+.+.+.+.+. +..+ .+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999988877764 4443 358999999999999875 99999999999999999888754
No 496
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=335.89 Aligned_cols=206 Identities=26% Similarity=0.433 Sum_probs=173.3
Q ss_pred cEEEEeeeeeeCCCCC--cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhccCCCC----ccEEEEcCeeCCCCChHH
Q 000560 1207 KIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS----GGRILIDGVDISMIGLQD 1280 (1421)
Q Consensus 1207 ~I~~~nvs~~Y~~~~~--~vL~~is~~I~~GekvgIVGrTGSGKSTLi~~L~rl~~p~----~G~I~IDG~dI~~i~l~~ 1280 (1421)
-++++|+++.|..... .+++||||++.+||.+||||.|||||||+.++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999965432 5999999999999999999999999999999999999987 899999999999998766
Q ss_pred Hh----cccEEEccCCc-cccc--cHhhhcCC----CC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000560 1281 LR----SRLSIIPQDPM-LFQG--TVRTNLDP----LE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1281 LR----~~i~iIpQdp~-LF~g--TIR~NLdp----~~----~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
.| ++|++|||||. .++. ||.+-+.- .. +...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 47999999994 4544 56555531 11 1123456777888887554332 2234679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhc-cCEEEEEeCCeeC
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 SgGQrQrl~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~Iv 1421 (1421)
|||||||+.||+||..+|++||+||||.+||..|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||++|++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865 68899999999999976 9999999999985
No 497
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=320.10 Aligned_cols=203 Identities=20% Similarity=0.347 Sum_probs=164.3
Q ss_pred ccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCcc-----CCCCcEEEECC---
Q 000560 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1421)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~vi~~~g--- 659 (1421)
..++++|.++.|+. .+.+++ ||++++||+++|+|+||||||||+++|.|..+ |++|++ .++|
T Consensus 23 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE--------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI-LYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE-EECCEEc
Confidence 36999999999863 358999 99999999999999999999999999999987 689986 5544
Q ss_pred ------------EEEEEcCCCcCCCCcHHHHhccCCC---C-CHHHH----HHHHHHhccchhHHhhcCCCCccccCCCC
Q 000560 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M-RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1421)
Q Consensus 660 ------------~iayv~Q~~~i~~~Ti~enI~fg~~---~-~~~~y----~~v~~~c~l~~dl~~~~~gd~t~ig~~g~ 719 (1421)
.++|++|++.++..|++||+.++.. . ++... .+.++..++..++. ...++++.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcc
Confidence 3799999999888899999987532 1 11111 22222222222222 22356788
Q ss_pred cCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEEE
Q 000560 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1421)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i~ 798 (1421)
+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||++++|++|++.
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998887765 55555567999999999999865 9999999999999
Q ss_pred EecCchhhhh
Q 000560 799 QSGKYEDLIA 808 (1421)
Q Consensus 799 ~~g~~~~l~~ 808 (1421)
+.|+++++..
T Consensus 246 ~~g~~~~~~~ 255 (271)
T PRK14238 246 EYDDTDKIFS 255 (271)
T ss_pred EeCCHHHHHc
Confidence 9999988765
No 498
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=320.64 Aligned_cols=200 Identities=24% Similarity=0.328 Sum_probs=163.7
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.. ..+.++| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 7 ~l~i~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 58999999999643 2458999 99999999999999999999999999999999999987 6665
Q ss_pred ----EEEEEcCCCc--CCCCcHHHHhccCCCC---CHH----HHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~~--i~~~Ti~enI~fg~~~---~~~----~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+|+ ++..|+++|+.++... ..+ +.+++++..++.. ..+.++.+||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 148 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQK 148 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHH
Confidence 3799999986 4567999999887432 222 1222333333321 12356789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||++||||++.+|+++||||||++||+.+.+.+++. +..+. .++|+|++||+++++..||+|++|++|++.+.|+.+
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998887764 44443 379999999999988779999999999999999988
Q ss_pred hhhh
Q 000560 805 DLIA 808 (1421)
Q Consensus 805 ~l~~ 808 (1421)
++..
T Consensus 228 ~~~~ 231 (269)
T PRK13648 228 EIFD 231 (269)
T ss_pred HHhc
Confidence 8765
No 499
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-33 Score=321.82 Aligned_cols=201 Identities=27% Similarity=0.402 Sum_probs=165.3
Q ss_pred cEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccCCCCcEEEECC---------
Q 000560 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1421)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~vi~~~g--------- 659 (1421)
.++++|++++|+.. ...+.+++ ||++++||+++|+|+||||||||+++|+|.++|.+|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHH
Confidence 48899999999743 22458999 99999999999999999999999999999999999987 6654
Q ss_pred ----EEEEEcCCCc--CCCCcHHHHhccCCC---CCH----HHHHHHHHHhccchhHHhhcCCCCccccCCCCcCChHHH
Q 000560 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1421)
Q Consensus 660 ----~iayv~Q~~~--i~~~Ti~enI~fg~~---~~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g~~LSGGQk 726 (1421)
.++|++|+|. ++..|+.|||.++.. ... ++.+++++.+++.. ........||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHH
Confidence 3799999984 567899999987632 122 22334444444432 12346789999999
Q ss_pred HHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCccchhccCEEEEEeCCEEEEecCch
Q 000560 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1421)
Q Consensus 727 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~D~i~~l~~G~i~~~g~~~ 804 (1421)
||++||||++.+|+++||||||++||+.+.+.+.+. +..+. + |+|+|++||+++++..||+|++|++|++++.|+++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPS 225 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998887764 44443 3 89999999999998789999999999999999998
Q ss_pred hhhh
Q 000560 805 DLIA 808 (1421)
Q Consensus 805 ~l~~ 808 (1421)
++..
T Consensus 226 ~~~~ 229 (277)
T PRK13642 226 ELFA 229 (277)
T ss_pred HHhc
Confidence 8765
No 500
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-33 Score=320.13 Aligned_cols=204 Identities=27% Similarity=0.404 Sum_probs=165.4
Q ss_pred CccEEEEeeEEEeCCcccccCCCcccccC-ceEeeCCcEEEEEccCCCChHHHHHHHcCCccC-----CCCcEEEECC--
Q 000560 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1421)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~vi~~~g-- 659 (1421)
...++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..++ ++|++ .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 446999999999963 358999 999999999999999999999999999999873 78986 4433
Q ss_pred -------------EEEEEcCCCcCCCCcHHHHhccCCCC----CH----HHHHHHHHHhccchhHHhhcCCCCccccCCC
Q 000560 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1421)
Q Consensus 660 -------------~iayv~Q~~~i~~~Ti~enI~fg~~~----~~----~~y~~v~~~c~l~~dl~~~~~gd~t~ig~~g 718 (1421)
.++|++|++.++..|++||+.++... .+ ++.+++++..++.+++. +..++++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 47999999998878999999876321 11 12333344444433222 2345778
Q ss_pred CcCChHHHHHHHHHHHhccCCCEEEeeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCccchhc-cCEEEEEeCCEE
Q 000560 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1421)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~D~i~~l~~G~i 797 (1421)
.+||||||||++||||++.+|++++|||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999998777665 45555557899999999998764 999999999999
Q ss_pred EEecCchhhhh
Q 000560 798 EQSGKYEDLIA 808 (1421)
Q Consensus 798 ~~~g~~~~l~~ 808 (1421)
++.|+.+++..
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999888764
Done!