Query 000560
Match_columns 1421
No_of_seqs 489 out of 5433
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:37:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000560.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_333-336//hhsearch_pdb/000560hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1557.7 113.8 1182 222-1421 2-1294(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1252.8 106.0 1133 273-1421 46-1248(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 729.6 63.8 492 928-1421 137-631 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 698.6 53.2 492 928-1421 109-603 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 667.7 54.9 537 878-1421 26-568 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 663.6 60.6 543 874-1421 8-556 (587)
7 4a82_A Cystic fibrosis transme 1.0 1 1 646.8 57.9 538 879-1421 4-554 (578)
8 3b60_A Lipid A export ATP-bind 1.0 1 1 642.1 66.0 537 878-1421 14-557 (582)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 640.5 67.9 538 877-1421 13-557 (582)
10 2yl4_A ATP-binding cassette SU 1.0 1 1 632.3 67.5 523 896-1421 24-560 (595)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1557.74 Aligned_cols=1182 Identities=18% Similarity=0.211 Sum_probs=884.9
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-----------C----CCCHHHHHHHHH-HHHHHH---HH
Q ss_conf 98413-4977878899999589499999999999985127-----------9----998789999999-999999---99
Q 000560 222 FQRGR-IQKLELLHIPPIPQSETANDASSLLEESLRKQKT-----------D----ATSLPQVIIHAV-WKSLAL---NA 281 (1421)
Q Consensus 222 ~~~g~-~~~L~~~dl~~l~~~~~~~~~~~~f~~~~~~~~~-----------~----~~~l~~al~~~~-~~~~l~---~~ 281 (1421)
++.|. +++|+..|.+.+.|+|..+...+.+++.|..... + ++.-++.+++.- +.+.++ +.
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~ 81 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGT 81 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 87731006876354456795011100001134542435543343100122320256877999973156767899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------CCC-------CC-CH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999864-------999-------87-41----6---8999999999999999999999999
Q 000560 282 AFAGVNTIASYIGPFLITNFVSFLS-------GKH-------DH-SS----Y---HYGLVLASVFLFAKTVESLTQRQWY 339 (1421)
Q Consensus 282 ~~~l~~~~~~~~~P~ll~~~i~~~~-------~~~-------~~-~~----~---~~g~~l~~~l~~~~~~~~l~~~~~~ 339 (1421)
+++++..++.-+.++++..+++.+. ... .. .. . ...+.++...+...++..+....|.
T Consensus 82 ~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 161 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYL 161 (1321)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999970100014543000344310016899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997011248---99968999999874999999999-9999999999999989999788556
Q 000560 340 FGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA 415 (1421)
Q Consensus 340 ~~~~~~g~rir~~L~~~iy~K~L~ls~~---~~~~G~ivNlms~D~~~i~~~~~-~~~~~~~~plqi~~~l~~L~~~lG~ 415 (1421)
+.+.++. ..++..+|+|.++++.. .+++|+++|++++|++++.+++. .+..++..+++++.++++++. ++|
T Consensus 162 ~~~~r~~----~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~-~~~ 236 (1321)
T 4f4c_A 162 YVAEQMN----NRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFT-HSW 236 (1321)
T ss_dssp HHHHHHH----HHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH-HCH
T ss_pred HHHHHHH----HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9999999----99999999999788989987998489999999999999999999999999999999999999999-989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999999981269999864099999999999999999999999
Q 000560 416 APAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYL 495 (1421)
Q Consensus 416 ~~~l~gl~~~~~~~~~~~~l~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~ 495 (1421)
..+++.++++++.+++...++++..++..+.++..+++.+.++|.++|||+||+|+||+.+.+++.+..+...+...+..
T Consensus 237 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 316 (1321)
T 4f4c_A 237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKG 316 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998399999821429999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99899999999998--9999999999998338878888999999999999999999999999999999999999986244
Q 000560 496 YTCSAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED 573 (1421)
Q Consensus 496 ~~~~~~~~~~~~~p--~~v~~~tf~~~~~~~~~L~~~~vft~la~~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 573 (1421)
...+.......... ..+.++.++.+.+.++.+++|.+++++.++..+..|+..++..++.+.++.+|++||.+|++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 396 (1321)
T 4f4c_A 317 LFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999959986999999999999999999989999999999999999999997178
Q ss_pred CCCCCC--CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 899998--8889889984089974599807865456788533247-6685189499999358999488998870776589
Q 000560 574 NQKKPI--TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1421)
Q Consensus 574 e~~~~~--~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~llGe~~~~ 650 (1421)
+..+.. ...+.......|+++|++|+|+.. +..+.|+| ||++++|++++|+|++|||||||+++|+|++++.
T Consensus 397 ~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSR-----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp CCSSCSSSCCCCCCCCCCCEEEEEEEECCSSS-----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-----CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 53456665565677888767999855407999-----9874333318862288278998058985778888754565164
Q ss_pred CCCEEEECC-------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
Q ss_conf 984899889-------------7799837776888758899603988-99788999999811100577511799742367
Q 000560 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1421)
Q Consensus 651 ~G~vi~~~g-------------~iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vl~~c~L~~di~~l~~Gd~t~iGe 716 (1421)
+|++ .++| +++||+|+||++++||||||+||++ .+++++.++++.|++++|++.+|+||+|+|||
T Consensus 472 ~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 472 KGKI-TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp EEEE-EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCCC-CCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 4861-579965011259998504666587533207861678864155220999999998756546887088888607558
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEECCE
Q ss_conf 98867917999999999861399799960888888976799999999966319957999817954021058899993987
Q 000560 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1421)
Q Consensus 717 ~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~~D~i~~l~~G~ 796 (1421)
+|.+|||||||||+||||+|+||+|++|||||||||++++ +++++++.+++++||+|+|||+++.++.||+|++|++|+
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te-~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQ 629 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH-HHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCE
T ss_conf 9887777787999999987259998998455446887899-999999999847988999736387898689899963996
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC-C---CCC----CCCCCCHHHHHCCC-CCCCCCCC
Q ss_conf 99941702456420069999999732003-----67999987865-6---667----65664012110048-88878889
Q 000560 797 IEQSGKYEDLIADQNSELVRQMKAHRKSL-----DQVNPPQEDKC-L---SRV----PCQMSQITEERFAR-PISCGEFS 862 (1421)
Q Consensus 797 i~~~G~~~~l~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~~-~~~~~~~~ 862 (1421)
|+++|+|+||++ .++.|.+++..+.... .+.....++.. . ... +.........+... ........
T Consensus 630 ive~Gth~eL~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1321)
T 4f4c_A 630 VVEVGDHRALMA-QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNG 708 (1321)
T ss_dssp EEEEECHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred EECCCCHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 513689999998-5327999999622122223323344332232111222223422222221102211101321245677
Q ss_pred CCCCCCHHHCCCC---------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCC
Q ss_conf 8873000002851---------------17879999998412369-999999999999997426778885200---2344
Q 000560 863 GRSQDEDTELGRV---------------KWTVYSAFITLVYKGAL-VPVILLCQVLFQALQMGSNYWIAWATD---EKRK 923 (1421)
Q Consensus 863 ~~~~~e~~~~g~v---------------~~~~y~~y~~~~~g~~~-~~~~~~~~~~~~~~~i~~~~wl~~~~~---~~~~ 923 (1421)
....++++..|.. .+..++.|.. ..+.+. +.+.+++..+.........+|+..|.+ ..+.
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1321)
T 4f4c_A 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYH-ARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA 787 (1321)
T ss_dssp -------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHH-TGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 40257775315403899999999707863109999999-87789999999999999999999999999999987517934
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCHHHHHH
Q ss_conf ---652104556798676799999999999999999999999999999984488432134--681347898620045755
Q 000560 924 ---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVD 998 (1421)
Q Consensus 924 ---~~~~~~i~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~sffd~--tp~GrilnR~s~D~~~id 998 (1421)
.....+..+|++++++..++.+++.++....+.++++++|.+++++++++|++|||+ +|+|+++||+++|+..+|
T Consensus 788 ~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~ 867 (1321)
T 4f4c_A 788 DFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLR 867 (1321)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHH
T ss_conf 55667899999999999999999999999999999999999999998887349933321678884888850250599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 21699999999999999999999999977899999999999999999999999999999957312078799998710799
Q 000560 999 TDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078 (1421)
Q Consensus 999 ~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~t 1078 (1421)
..++..+..++..++.+++.+++++.++|.+.+++++++++.++...++.+..+...+......++...++.|++.|+.+
T Consensus 868 ~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 947 (1321)
T 4f4c_A 868 TAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRT 947 (1321)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986537777022137868999999998889999999999999999999999988898899999962798
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--CCCCCCHHHHHHHHHHHHH-
Q ss_conf 987231789999999999998888999986767999999999999999999999-871--2787788899999999999-
Q 000560 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTL--PRSAIDPSLAGLAATYGLN- 1154 (1421)
Q Consensus 1079 IRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~-~~l--~~~~~~~~~~gl~lsy~l~- 1154 (1421)
||+|++|++|.+++.+..+...+..+.......+.......+..+...++..+. ... ......++.+ +...+++.
T Consensus 948 Ira~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~-~~~~~~~~~ 1026 (1321)
T 4f4c_A 948 VQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRV-LRVMYAITI 1026 (1321)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHH-HHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHH
T ss_conf 8861414889999999999999999999999999999999999999999998757887537654214789-999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCEEEEEEEEE
Q ss_conf 9999999999999999843179999985169998853347999999999987479974554617998-951110027850
Q 000560 1155 LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFP 1233 (1421)
Q Consensus 1155 l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vLk~is~~i~ 1233 (1421)
....+.++...+.++++.+.+++|+.++.+.++|.+ +...+++.||..|.|+|+||+|+|+.+. .+||+|+||+|+
T Consensus 1027 ~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~ 1103 (1321)
T 4f4c_A 1027 STSTLGFATSYFPEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVE 1103 (1321)
T ss_dssp TTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 788999999999999999999998999860766577---76677878888881899987985799998821245169988
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC---CCCC
Q ss_conf 9949999889999988999998416789861899969617999967774012888367765556576604879---9999
Q 000560 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHS 1310 (1421)
Q Consensus 1234 ~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~---~~~s 1310 (1421)
||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||+++++|||||+||+||||+||..+ ++++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCC
T ss_conf 98999998999981999999995686389978999999865499999985459987899732723999974549999999
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999983828999841035575345799989904999999999861599889984667899989799999999987
Q 000560 1311 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1390 (1421)
Q Consensus 1311 d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~ 1390 (1421)
|+|+|+|+++++++++|.++|+||||.|+|+|.|||||||||+|||||+||+|+|||||||||+||++||+.||++|++.
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999982984999717678999823889156999999999999997179989996811157899999999999997
Q ss_pred CCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 4994799972491333002989998298329
Q 000560 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1391 f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
+++||+|+||||++||++||||+|||+|+|+
T Consensus 1264 ~~~~TvI~IAHRLsTi~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1264 REGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp SSSSEEEEECSSSSTTTTCSEEEEESSSSEE
T ss_pred CCCCEEEEECCCHHHHHHCCEEEEEECCEEE
T ss_conf 3999899960689999969999999898999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1252.75 Aligned_cols=1133 Identities=18% Similarity=0.206 Sum_probs=817.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCC---------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999864999--------874---------16899999999999999999999
Q 000560 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH--------DHS---------SYHYGLVLASVFLFAKTVESLTQ 335 (1421)
Q Consensus 273 ~~~~~l~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~--------~~~---------~~~~g~~l~~~l~~~~~~~~l~~ 335 (1421)
.|..+++..++.++..++..+.|+++..+++...... ... .......++..++...++..++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1284)
T 3g5u_A 46 DRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVA 125 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999861344433222222111110024468899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999997011248---999689999998749999999999-99999999999998999978
Q 000560 336 RQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYK 411 (1421)
Q Consensus 336 ~~~~~~~~~~g~rir~~L~~~iy~K~L~ls~~---~~~~G~ivNlms~D~~~i~~~~~~-~~~~~~~plqi~~~l~~L~~ 411 (1421)
....+...+.+.++-..+...+|+|.++++.. ..++|+++|.++.|++.+.+++.. +..+....+.++.++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~- 204 (1284)
T 3g5u_A 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF- 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999999999999999986998997568877899999988999999999999999999999999999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 85568999999999999999999999999999999999999999999998126999986409999999999999999999
Q 000560 412 NLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491 (1421)
Q Consensus 412 ~lG~~~~l~gl~~~~~~~~~~~~l~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l 491 (1421)
.+.|..+++.++.++++..+...+.+...+...+.++..++......|.++||++||.|++|+.+.++..+.-+.-.+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999999999999999999999999999999999999999999787999984653999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998999999999--98999999999999833887888899999999999999999999999999999999999998
Q 000560 492 KKYLYTCSAIAFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (1421)
Q Consensus 492 ~~~~~~~~~~~~~~~~--~p~~v~~~tf~~~~~~~~~L~~~~vft~la~~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (1421)
.+.....+....+... ....+.++.+|.+.+..+.+++|.+++++..+.....|+..+...+..+.++..+.+|+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999992998899999999999999999999999999999999999999999
Q ss_pred HCCCCCCCC--CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 624489999--88889889984089974599807865456788533247-668518949999935899948899887077
Q 000560 570 IKEDNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1421)
Q Consensus 570 L~~~e~~~~--~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~i~G~~GsGKStLl~~llGe 646 (1421)
++.+++.+. ....+.......|+++|++|+|+.. +..+.|+| ||++++|++++|+|++|||||||+++|+|+
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~-----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSR-----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSST-----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-----CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 728986776665677777777718999989976999-----987101254589759988999899999799999998078
Q ss_pred CCCCCCCEEEECCE-------------EEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf 65899848998897-------------799837776888758899603988-9978899999981110057751179974
Q 000560 647 IPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1421)
Q Consensus 647 ~~~~~G~vi~~~g~-------------iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vl~~c~L~~di~~l~~Gd~t 712 (1421)
+++.+|++ .++|. ++||+|+||++++||+|||.||.+ .++++++++++.|++.++++.+|+|++|
T Consensus 440 ~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 440 YDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp SCCSEEEE-EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCCEEE-EECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCC
T ss_conf 89997389-99999877579999986548986887537766999974579899999999999982969999746563345
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEE
Q ss_conf 23679886791799999999986139979996088888897679999999996631995799981795402105889999
Q 000560 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1421)
Q Consensus 713 ~iGe~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~~D~i~~l 792 (1421)
.+||+|.+|||||||||+||||++++|+|++||||||+||++++..+ .+++....+++|+|+|||+++.+..||+|++|
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl 597 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGRTTIVIAHRLSTVRNADVIAGF 597 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTSEEEEECSCHHHHTTCSEEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHCCCEEEEE
T ss_conf 01478786599999999999999529998999798777799999999-99999973999899994077899749989999
Q ss_pred ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCC-CCCCCCCC-CH-HHHHCCC---CCCCCCCC
Q ss_conf 3987999417024564200699999997320036799998----78656-66765664-01-2110048---88878889
Q 000560 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ----EDKCL-SRVPCQMS-QI-TEERFAR---PISCGEFS 862 (1421)
Q Consensus 793 ~~G~i~~~G~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~-~~-~~~~~~~---~~~~~~~~ 862 (1421)
++|++++.|+++++++ .++.+.++............... ..... ...+.... .. ...+... ........
T Consensus 598 ~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1284)
T 3g5u_A 598 DGGVIVEQGNHDELMR-EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDR 676 (1284)
T ss_dssp SSSCCCCEECHHHHHH-TTSHHHHHHHHTC--------------------------------------------------
T ss_pred ECCEEEEECCHHHHHH-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999999788999986-787799999974300221113333332222234433333333200034543334456422332
Q ss_pred CCCCCCHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCC----CCCCCCHHHH
Q ss_conf 88730000--02851178799999984123699999999999999974267788----85200234----4652104556
Q 000560 863 GRSQDEDT--ELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI----AWATDEKR----KVSREQLIGV 932 (1421)
Q Consensus 863 ~~~~~e~~--~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl----~~~~~~~~----~~~~~~~i~~ 932 (1421)
....+|+. ......+..++.|.+..+....+ .+++.++..+......+++ ..+....+ ......+..+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 754 (1284)
T 3g5u_A 677 KLSTKEALDEDVPPASFWRILKLNSTEWPYFVV--GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLL 754 (1284)
T ss_dssp -------CCCCCSCCCTTHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 110245553136625899999984515799999--999999999999999999999999985568503367799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 79867679999999999999999999999999999998448843213--4681347898620045755216999999999
Q 000560 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFD--STPSSRILNRCSTDQSTVDTDIPYRLAGLAF 1010 (1421)
Q Consensus 933 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~sffd--~tp~GrilnR~s~D~~~id~~l~~~l~~~~~ 1010 (1421)
|+++++...++.+++.+.+...+.+...++|.+++++++++|++||| .+|+|+++||+++|+..++..++..+..++.
T Consensus 755 ~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~ 834 (1284)
T 3g5u_A 755 FLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQ 834 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999839988875789988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999977899999999999999999999999999999957312078799998710799987231789999
Q 000560 1011 ALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLL 1090 (1421)
Q Consensus 1011 ~~~~~l~~i~v~~~~~~~~~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~ 1090 (1421)
.++.+++.+++++.+.|.+.++++.++++.+.+...+.+..+...+......+....++.|++.|+.+||+|+.|+++.+
T Consensus 835 ~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~ 914 (1284)
T 3g5u_A 835 NIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET 914 (1284)
T ss_dssp HHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999999969999999999999999999999999999999999999999999999988999998465999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998888999986767999999999999999---99999-98712787788899999999999999999999999
Q 000560 1091 RSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF---LVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1166 (1421)
Q Consensus 1091 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~---~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~ 1166 (1421)
++.+..+...+...... .|.+....+...+..+ .+..+ ......+.++.+.......+..........+....
T Consensus 915 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 991 (1284)
T 3g5u_A 915 MYAQSLQIPYRNAMKKA---HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA 991 (1284)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999---999999999999999999999999999999098069999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCC
Q ss_conf 999984317999998516999885334799999999998747997455461799-8951110027850994999988999
Q 000560 1167 CNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTG 1245 (1421)
Q Consensus 1167 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekigIVGrTG 1245 (1421)
.++.....+.+|+.++.+.+++.+... ..+.+.++..|.|+++||+++|+.. ..++|+|+||++++||++||||+||
T Consensus 992 ~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sG 1069 (1284)
T 3g5u_A 992 PDYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069 (1284)
T ss_dssp CCSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCC
T ss_conf 999999999999999983887666655--566545677785799998997799998700203059976998899988999
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC---CCCCHHHHHHHHHHCC
Q ss_conf 9988999998416789861899969617999967774012888367765556576604879---9999999999999838
Q 000560 1246 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHSDQEIWEVINKCH 1322 (1421)
Q Consensus 1246 SGKSTLi~~L~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~---~~~sd~eI~~aL~~~~ 1322 (1421)
||||||+++|+|+++|++|+|.+||+|+++++++++|+++++|||||.+|++|||+|+.+. ...+++++++++++++
T Consensus 1070 sGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~ 1149 (1284)
T 3g5u_A 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN 1149 (1284)
T ss_dssp TTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 97899999994686789977989999800078999970268987787406666999974668778999999999999839
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28999841035575345799989904999999999861599889984667899989799999999987499479997249
Q 000560 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1402 (1421)
Q Consensus 1323 L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHR 1402 (1421)
+++++.++|+||||.++|+|.+||||||||+|||||++++|+||+||||||++|.+|+..|++.|++..+++|+|+||||
T Consensus 1150 ~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1150 IHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp CHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 59999727042456117888933899999999999997499999986875557999999999999986799989999558
Q ss_pred HHHHHCCCEEEEEECCEEC
Q ss_conf 1333002989998298329
Q 000560 1403 IPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1403 l~ti~~~DrIlvLd~G~iv 1421 (1421)
++++.+||||+||++|+++
T Consensus 1230 l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1230 LSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp TTGGGSCSEEEEEETBEEE
T ss_pred HHHHHCCCEEEEEECCEEE
T ss_conf 7999809989999899899
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=729.60 Aligned_cols=492 Identities=20% Similarity=0.245 Sum_probs=432.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 04556798676799999999999999999999999999999984488432134681347898620045755216999999
Q 000560 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1421)
Q Consensus 928 ~~i~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~ 1007 (1421)
.++..|++++++..++.++..+++.+.+.+...+++.++++++++.|++|||++++|++++|+++|++.++..+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879984899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999977899999999999999999999999999999957312078799998710799987231789
Q 000560 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1421)
Q Consensus 1008 ~~~~~~~~l~~i~v~~~~~~~~~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~ 1087 (1421)
++...+.+++.+++++.++|.+.++++..+++..++..++.+..+...+......+...+++.|++.|+.+||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999999999989999999999999999999999999999999999999999999999983999998214299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999888899998676799999999999999999999-98712787788899999999999999999999999
Q 000560 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1166 (1421)
Q Consensus 1088 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~ 1166 (1421)
+.+++.+..+...+..........+......++..+....+.++ ...+..+.+++|.+...+.|...+...+..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999599869999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCC
Q ss_conf 999984317999998516999885334799999999998747997455461799-8951110027850994999988999
Q 000560 1167 CNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTG 1245 (1421)
Q Consensus 1167 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekigIVGrTG 1245 (1421)
..+.....+.+|+.++.+.+++.+.. ........+..|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSS--SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCS--SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCC
T ss_conf 99999999999999997178534566--6556567788876799985540799998743333188622882789980589
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCH
Q ss_conf 99889999984167898618999696179999677740128883677655565766048799-99999999999983828
Q 000560 1246 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLA 1324 (1421)
Q Consensus 1246 SGKSTLi~~L~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~~-~~sd~eI~~aL~~~~L~ 1324 (1421)
||||||+++|.|+|+|++|+|.+||+||+++++++||+++++|||||.||+||||+||..+. .++|+++++|++.|+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf 85778888754565164486157996501125999850466658753320786167886415522099999999875654
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 99984103557534579998990499999999986159988998466789998979999999998749947999724913
Q 000560 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404 (1421)
Q Consensus 1325 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1404 (1421)
+++..+|+|+||.|||+|.|||||||||+|||||++++|+|++||||||++|++||..+++.|++..+++|+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred HHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 68870888886075589887777787999999987259998998455446887899999999999847988999736387
Q ss_pred HHHCCCEEEEEECCEEC
Q ss_conf 33002989998298329
Q 000560 1405 TVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1405 ti~~~DrIlvLd~G~iv 1421 (1421)
|+.+||+|+||++|+|+
T Consensus 615 ~i~~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVV 631 (1321)
T ss_dssp TTTTCSEEEEEETTEEE
T ss_pred HHHHCCEEEEEECCEEE
T ss_conf 89868989996399651
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=698.62 Aligned_cols=492 Identities=20% Similarity=0.254 Sum_probs=420.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 04556798676799999999999999999999999999999984488432134681347898620045755216999999
Q 000560 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1421)
Q Consensus 928 ~~i~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~ 1007 (1421)
.+..+|++++++..++.+++.++....+.+...++|.+++++++++|++|||++++|+++||+++|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998699899756887789999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999977899999999999999999999999999999957312078799998710799987231789
Q 000560 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1087 (1421)
Q Consensus 1008 ~~~~~~~~l~~i~v~~~~~~~~~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~ 1087 (1421)
++..++.+++.+++++.++|.+.+++++++++++++..++.+..++..+......++..+++.|++.|+.+||+|++|++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHH
T ss_conf 99999999999999999989999999999999999999999999999999999999999999999978799998465399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999888899998676799999999999999999999-98712787788899999999999999999999999
Q 000560 1088 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1166 (1421)
Q Consensus 1088 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~ 1166 (1421)
+.+++.+..+.+.+..........+......++..+....+.++ ......+.+++|.+.....+.+.....+..+...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999299889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCC
Q ss_conf 999984317999998516999885334799999999998747997455461799-8951110027850994999988999
Q 000560 1167 CNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTG 1245 (1421)
Q Consensus 1167 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekigIVGrTG 1245 (1421)
..+.+...+.+|+.++.+.+++.+...+...++ .+..|.|+|+||+|+|+.+ .+++|+|+||++++||++||||+||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCC
T ss_conf 999999999999999972898677666567777--777771899998997699998710125458975998899989999
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCH
Q ss_conf 9988999998416789861899969617999967774012888367765556576604879-999999999999983828
Q 000560 1246 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLA 1324 (1421)
Q Consensus 1246 SGKSTLi~~L~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~-~~~sd~eI~~aL~~~~L~ 1324 (1421)
||||||+++|.|+++|++|+|.+||+|+++++++++|+++++|||||.+|++|||+|+.+. ...++++++++++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCH
T ss_conf 97999999980788999738999999877579999986548986887537766999974579899999999999982969
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 99984103557534579998990499999999986159988998466789998979999999998749947999724913
Q 000560 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404 (1421)
Q Consensus 1325 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1404 (1421)
+++.++|+|+|+.++|+|.+||||||||+|||||++++|+||+||||||++|++|+..+++.+++..+++|+|+||||++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 99974656334501478786599999999999999529998999798777799999999999999739998999940778
Q ss_pred HHHCCCEEEEEECCEEC
Q ss_conf 33002989998298329
Q 000560 1405 TVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1405 ti~~~DrIlvLd~G~iv 1421 (1421)
++.+||+|+||++|+++
T Consensus 587 ~i~~~d~i~vl~~G~i~ 603 (1284)
T 3g5u_A 587 TVRNADVIAGFDGGVIV 603 (1284)
T ss_dssp HHTTCSEEEECSSSCCC
T ss_pred HHHCCCEEEEEECCEEE
T ss_conf 99749989999899999
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=667.70 Aligned_cols=537 Identities=23% Similarity=0.314 Sum_probs=455.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879999998412369999999999999997426778885200234-465---2104556798676799999999999999
Q 000560 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1421)
Q Consensus 878 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~-~~~---~~~~i~~y~~l~~~~~~~~~~~~~~~~~ 953 (1421)
..++.|++..+ ..+.+.+++.++..++.+..++++....+.-. ..+ ...++.+++++.+...++.+++.+....
T Consensus 26 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (598)
T 3qf4_B 26 RRLLGYLRPHT--FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLT 103 (598)
T ss_dssp HHHGGGTGGGH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999--9999999999999999999999999999999736888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998448843213468134789862004575521699999999999999999999999977899999
Q 000560 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1421)
Q Consensus 954 ~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i~ 1033 (1421)
.+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++...+.+++.+++++.++|.+.+++
T Consensus 104 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~ 183 (598)
T 3qf4_B 104 LSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVT 183 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999779999976888899999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999995731207879999871079998723178999999999999888899998676799
Q 000560 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1421)
Q Consensus 1034 i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1421)
+.++++++++..++.+..++..+......++..+++.|++.|+.+||+|++|+.+.+++.+..+...+..........+.
T Consensus 184 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (598)
T 3qf4_B 184 LSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVL 263 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999973799999748709999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999999999999-9871278778889999999999999999999999999998431799999851699988533
Q 000560 1114 CLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1421)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1421)
....+++..+....+..+ ......+.+++|.....+.|...+...+..+...+..++..+.+.+|+.++.+.|+|.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~- 342 (598)
T 3qf4_B 264 PPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD- 342 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 9999999999999999999999985997899999999999999999999999999999999999999999768877777-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 47999999999987479974554617998951110027850994999988999998899999841678986189996961
Q 000560 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1421)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDGvd 1272 (1421)
..+.+.++..|.|+++|++++|+++ .++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+||+|
T Consensus 343 ---~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 343 ---PDAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp ---SSCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred ---CCCCCCCCCCCEEEEEEEEEECCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEE
T ss_conf ---7777777777718999989977999-860122279986998899989999969999999945857998089999998
Q ss_pred CCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 79999677740128883677655565766048799-99999999999983828999841035575345799989904999
Q 000560 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351 (1421)
Q Consensus 1273 I~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1351 (1421)
+++++.+++|++++++||||.+|++|+|+|+.... ..++++++++++.+++++++..+|+|+|+.++|+|.+|||||||
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Q 498 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHH
T ss_pred HHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHH
T ss_conf 30188999984108990798232463999974479999999999999996978889746453236422788987999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 9999998615998899846678999897999999999874994799972491333002989998298329
Q 000560 1352 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1352 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
|+|||||++++|+||+||||||++|++++..+++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 499 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEE
T ss_conf 9999999964999999989766799999999999999980899899994277899719989999899999
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=663.60 Aligned_cols=543 Identities=20% Similarity=0.267 Sum_probs=443.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCC---CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51178799999984123699999999999999974267788852002344-652---10455679867679999999999
Q 000560 874 RVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRK-VSR---EQLIGVFIFLSGGSSFFILGRAV 949 (1421)
Q Consensus 874 ~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~~-~~~---~~~i~~y~~l~~~~~~~~~~~~~ 949 (1421)
...++.++.|++..++. +.+.+++.++..++.+..+++++++.+.... .+. ..+...++++.+...++.+++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 8 GGGSKTLARYLKPYWIF--AVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCCCCCGGGGTGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53499999999999999--9999999999999999999999999999873698799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999844884321346813478986200457552169999999999999999999999997789
Q 000560 950 LLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQV 1029 (1421)
Q Consensus 950 ~~~~~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~ 1029 (1421)
+....+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++...+.+++.+++++.++|.+
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 165 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999978897997658889999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999573120787999987107999872317899999999999988889999867
Q 000560 1030 FPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT 1109 (1421)
Q Consensus 1030 ~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1109 (1421)
.++++..+++...+..++.+..+...+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998559999986214999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6799999999999999999999-987127877888999999999999999999999999999843179999985169998
Q 000560 1110 MEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSE 1188 (1421)
Q Consensus 1110 ~~wl~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E 1188 (1421)
..+......++..+....+.++ ......+.++.|.......|...+...+..+...+..+.....+.+|+.++.+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 246 IVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999984993899999999999999999999999999999999999999999768976
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 85334799999999998747997455461799895111002785099499998899999889999984167898618999
Q 000560 1189 APLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1421)
Q Consensus 1189 ~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~I 1268 (1421)
.+. ...+.+.++..|.|+++|++++|+++.+++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 326 ~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 326 IEE---ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp CCC---CTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred CCC---CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 578---87765668888807997889984899976421117998699889998999997999999992786699867989
Q ss_pred CCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 69617999967774012888367765556576604879-99999999999998382899984103557534579998990
Q 000560 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1347 (1421)
Q Consensus 1269 DGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1347 (1421)
||+|+++++.+++|++++++||||.+|++|+|+|+... +..++++++++++.+++++++..+|+|+|+.++++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCH
T ss_conf 99983407899998413897789867675599998524889999999999999684999975653121275189899299
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 49999999998615998899846678999897999999999874994799972491333002989998298329
Q 000560 1348 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1348 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
|||||+|||||++++|+|++||||||++|++++..|++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEE
T ss_conf 99999999999972999999979754479999999999999867999899982276889819989999899899
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=646.80 Aligned_cols=538 Identities=19% Similarity=0.253 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCC-C-------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999841236999999999999999742677888520023---4465-2-------104556798676799999999
Q 000560 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKVS-R-------EQLIGVFIFLSGGSSFFILGR 947 (1421)
Q Consensus 879 ~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~---~~~~-~-------~~~i~~y~~l~~~~~~~~~~~ 947 (1421)
.++.|++..++.. .+.+++.++..+..+..++.+.+..+.- .... . ..+...+.++.+...++.+++
T Consensus 4 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 4 RYLQFVKPYKYRI--FATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHGGGHHHH--HHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988999999--99999999999999999999999999998168711467788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998448843213468134789862004575521699999999999999999999999977
Q 000560 948 AVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAW 1027 (1421)
Q Consensus 948 ~~~~~~~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~ 1027 (1421)
.+.....+.+...+++.++++++++.|++||+++++|++++|+++|++.++..+...+..++...+.+++.+++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999878999976898699999999999999999999999999999999999999999969
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999995731207879999871079998723178999999999999888899998
Q 000560 1028 QVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNC 1107 (1421)
Q Consensus 1028 ~~~~i~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1107 (1421)
++.++.+..+++++.+..++.+..++..+......++..+++.|++.|+.+||+|+.|+.+.+++.+..+...+......
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999982499999816649999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 676799999999999999999999-9871278778889999999999999999999999999998431799999851699
Q 000560 1108 GTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1186 (1421)
Q Consensus 1108 ~~~~wl~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~ 1186 (1421)
....+......++..+....+..+ ......+.+++|.......|...+...+..+...+..+.....+.+|+.++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999859958999999999999999999999999999999999999999997689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 98853347999999999987479974554617998951110027850994999988999998899999841678986189
Q 000560 1187 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266 (1421)
Q Consensus 1187 ~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I 1266 (1421)
+|.+. ...+.+.++..|.|+++|++++|+++.+++|+|+||++++||++|||||||||||||+++|.|+++|++|+|
T Consensus 322 ~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 322 YDIKN---GVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp CSSCC---CTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCCCC---CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 76667---877666677788079999999758999741343379987999999989999859999999846788999679
Q ss_pred EECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9969617999967774012888367765556576604879-999999999999983828999841035575345799989
Q 000560 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1345 (1421)
Q Consensus 1267 ~IDGvdI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1345 (1421)
.+||.|+++++.+++|++++++||+|.+|++|+|+|+... +..++++++++++.+++++++..+|+|+|+.++|+|.+|
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred EECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCC
T ss_conf 99999844278999960068992898347645999985279998899999999880959999757330102530688967
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 9049999999998615998899846678999897999999999874994799972491333002989998298329
Q 000560 1346 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1346 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
|||||||++||||++++|+|++||||||++|++++..+++.+++..+++|+|+||||++++..||+|++|++|+++
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEE
T ss_conf 9999999999999974999999978654579999999999999980899799983178999719989999899899
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=642.05 Aligned_cols=537 Identities=20% Similarity=0.235 Sum_probs=454.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCC--CCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8799999984123699999999999999974267788852002344-652--1045-56798676799999999999999
Q 000560 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRK-VSR--EQLI-GVFIFLSGGSSFFILGRAVLLAT 953 (1421)
Q Consensus 878 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~~-~~~--~~~i-~~y~~l~~~~~~~~~~~~~~~~~ 953 (1421)
+.++.|++..++ .+.+.+++.++..++....++++.++.+.-.. .+. ..++ ..++++.+...++.+++.+....
T Consensus 14 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (582)
T 3b60_A 14 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 91 (582)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999988436865799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998448843213468134789862004575521699999999999999999999999977899999
Q 000560 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1421)
Q Consensus 954 ~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i~ 1033 (1421)
.+.+...+++.++++++++.|++||+++++|++++|+++|++.++..+...+..++...+.+++.+++++.++|++.+++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 171 (582)
T 3b60_A 92 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999809999978898658999999879999999999999999999999999999999809999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999995731207879999871079998723178999999999999888899998676799
Q 000560 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1421)
Q Consensus 1034 i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1421)
+..+++++++..++.+..++..+......++..+++.|++.|+.+||+|+.|+.+.+++.+..+...+..........|.
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3b60_A 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 251 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999996199999837689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999999999999-871278778889999999999999999999999999998431799999851699988533
Q 000560 1114 CLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192 (1421)
Q Consensus 1114 ~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1192 (1421)
....+++..+....+.++. .....+.+++|.......|...+...+..+...+.++.....+.+|+.++.+.|+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~- 330 (582)
T 3b60_A 252 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE- 330 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 9999999999999999999999984999899999999999999999999999999999999999999999759987667-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 47999999999987479974554617998951110027850994999988999998899999841678986189996961
Q 000560 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1421)
Q Consensus 1193 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDGvd 1272 (1421)
. +.+.++..+.|+++|++++|+++..++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+||.|
T Consensus 331 --~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 331 --G--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp --C--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred --C--CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEE
T ss_conf --7--777778888479998899739999744156159976999899989999989999999861068989769799998
Q ss_pred CCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 79999677740128883677655565766048799--9999999999998382899984103557534579998990499
Q 000560 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350 (1421)
Q Consensus 1273 I~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1350 (1421)
+++++.+++|++++++||+|.+|++|+|+|+.... +.++++++++++++++++++.++|+|+|+.++++|.+||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred CCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 23069999996080880687477878999985459999899999999998497999984504114511479887899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 99999998615998899846678999897999999999874994799972491333002989998298329
Q 000560 1351 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1351 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
||++||||++++|+|++||||||++|++++..+++.|++..+++|+|+|+||++++..||+|++|++|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEE
T ss_conf 99999999972899899978655579899999999999996799799994547789859989999788898
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=640.52 Aligned_cols=538 Identities=20% Similarity=0.305 Sum_probs=453.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7879999998412369999999999999997426778885200234---46521045-5679867679999999999999
Q 000560 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR---KVSREQLI-GVFIFLSGGSSFFILGRAVLLA 952 (1421)
Q Consensus 877 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~---~~~~~~~i-~~y~~l~~~~~~~~~~~~~~~~ 952 (1421)
++.++.|++..++. + .+.+++.++..++....++++.+..+... ......++ ..++++.+...++.+++.+...
T Consensus 13 ~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 13 FKRLWTYIRLYKAG-L-VVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998899999-9-999999999999999999999999999864686679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999844884321346813478986200457552169999999999999999999999997789999
Q 000560 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1421)
Q Consensus 953 ~~~~~~s~~l~~~l~~~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i 1032 (1421)
..+.+...+++.++++++++.|++||+++++|++++|+++|++.++..+...+..++...+.+++.+++++.++|++.++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999986999997789878999999988999999999999999999999999999999982999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999573120787999987107999872317899999999999988889999867679
Q 000560 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1421)
Q Consensus 1033 ~i~~~~l~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1421)
++..+++++++..++.+..++..+......+...+++.|++.|+.+||+|+.|+.+.+++.+..+...+..........|
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999519999970875999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999-987127877888999999999999999999999999999843179999985169998853
Q 000560 1113 LCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1421)
Q Consensus 1113 l~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1191 (1421)
.....+++..+....+.++ ......+.+++|.......+...+...+..+...+..+.....+.+|+.++.+.++|.+
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~- 329 (582)
T 3b5x_A 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD- 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 9999999999999999999999998599889999999999999999999999999999999999999999975897677-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 34799999999998747997455461799895111002785099499998899999889999984167898618999696
Q 000560 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1421)
Q Consensus 1192 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDGv 1271 (1421)
+.. .+.++..+.|+++|++++|+++.+++|+|+|+++++||++||||+||||||||+++|.|+++|++|+|.+||.
T Consensus 330 --~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 330 --NGK--YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred --CCC--CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf --777--7777788828999989972899865400416998799989998999997999999996577899987989999
Q ss_pred ECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 179999677740128883677655565766048799--999999999999838289998410355753457999899049
Q 000560 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1349 (1421)
Q Consensus 1272 dI~~i~l~~LR~~isiIPQdp~LF~GTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1349 (1421)
|+.+++.+++|++++++||+|.+|++|+++|+.... +.++++++++++.+++++++.++|+|+|+.++++|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred EHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHH
T ss_conf 85638899996485898279905310299998566889999999999999879899998476533451068888479999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 999999998615998899846678999897999999999874994799972491333002989998298329
Q 000560 1350 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1350 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
|||++||||++++|+|++||||||++|++++..+++.|++..+++|+|+|+||++++..||+|++|++|+++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEE
T ss_conf 999999999974999999978544689999999999999972899899993688999819989999899899
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=632.25 Aligned_cols=523 Identities=21% Similarity=0.265 Sum_probs=437.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC--CC-CC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999742677888520023--44-65----2104556798676799999999999999999999999999999
Q 000560 896 ILLCQVLFQALQMGSNYWIAWATDEK--RK-VS----REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMIT 968 (1421)
Q Consensus 896 ~~~~~~~~~~~~i~~~~wl~~~~~~~--~~-~~----~~~~i~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~ 968 (1421)
.+++.++..++....++++.+..+.- .. .+ ...++..++++.+...++.+++.+.....+.+...+++.++++
T Consensus 24 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 103 (595)
T 2yl4_A 24 AVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFS 103 (595)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999735740266799999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98448843213468134789862004575521699999999999999999999999977899999999999999999999
Q 000560 969 SVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYI 1048 (1421)
Q Consensus 969 ~il~ap~sffd~tp~GrilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~i~v~~~~~~~~~~i~i~~~~l~~~~~~~y~ 1048 (1421)
++++.|++||+++++|++++|+++|++.++..+...+..++...+.+++.+++++.++|.+.++++..+++.+.+...+.
T Consensus 104 ~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 183 (595)
T 2yl4_A 104 SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183 (595)
T ss_dssp HHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99819999977798488999999999999999999999999999999999999999819999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999995731207879999871079998723178999999999999888899998676799999999999999999
Q 000560 1049 TTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV 1128 (1421)
Q Consensus 1049 ~~sr~l~rl~~~~~spi~~~~~Eti~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1128 (1421)
+..++..+......+...+++.|++.|+.+||+|+.|+++.+++.+..+...+..........|......++..+....+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (595)
T 2yl4_A 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 263 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999981199999837569999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-9871278778889999999999999999999999999998431799999851699988533479999999999874
Q 000560 1129 LII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK 1207 (1421)
Q Consensus 1129 ~~~-~~~l~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1207 (1421)
.++ ......+.+++|.......|...+...+..+...+..+.....+.+|+.++.+.++|.+. +...+ +..+..|.
T Consensus 264 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~--~~~~~-~~~~~~~~ 340 (595)
T 2yl4_A 264 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF--NEGVI-LNEKSFQG 340 (595)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCS--SCSBC-CCTTTCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC-CCCCCCCC
T ss_conf 9999999986997899999999999999999999999999999999999999999838976677--77877-77678998
Q ss_pred -EEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf -7997455461799-89511100278509949999889999988999998416789861899969617999967774012
Q 000560 1208 -IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1421)
Q Consensus 1208 -I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1285 (1421)
|+++|++++|+.+ ..++|+|+||++++||++|||||||||||||+++|.|+++|++|+|.+||.|+.+++.+++|+++
T Consensus 341 ~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp CEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCE
T ss_conf 38999889985899888120112799849988999899999799999998258578983799999981117999997322
Q ss_pred EEECCCCCCCCCCHHHHCCCCC----CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8883677655565766048799----999999999999838289998410355753457999899049999999998615
Q 000560 1286 SIIPQDPMLFQGTVRTNLDPLE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1361 (1421)
Q Consensus 1286 siIPQdp~LF~GTIR~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1361 (1421)
+++||+|.+|++|+++|+.... ..++++++++++.+++++++.++|+|+|+.++++|.+||||||||++||||+++
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 89836883268779999840587766568999999999869799997473201350168878689999999999999975
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEC
Q ss_conf 998899846678999897999999999874994799972491333002989998298329
Q 000560 1362 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKLK 1421 (1421)
Q Consensus 1362 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlvLd~G~iv 1421 (1421)
+|+|++||||||++|++++..+++.|++..+++|+|+|+||++++..||+|++|++|+++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEE
T ss_conf 999999988666899899999999999996599799994687899759989999899899
Done!