Query 000561
Match_columns 1419
No_of_seqs 360 out of 675
Neff 5.3
Searched_HMMs 46136
Date Mon Apr 1 19:21:06 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 3E-154 6E-159 1365.5 56.8 943 68-1417 118-1136(1163)
2 smart00761 HDAC_interact Histo 100.0 2.8E-43 6.1E-48 338.2 7.1 100 494-593 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 2.6E-41 5.5E-46 326.9 7.9 100 494-593 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 2.9E-38 6.4E-43 347.5 17.4 160 73-232 14-197 (231)
5 KOG4204 Histone deacetylase co 99.8 1.1E-19 2.3E-24 201.0 17.3 178 157-430 14-193 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 3.1E-19 6.7E-24 215.8 18.0 211 157-430 123-335 (1163)
7 PF02671 PAH: Paired amphipath 99.3 3.2E-12 6.9E-17 108.5 4.9 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.5E-11 3.2E-16 104.5 5.9 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 95.9 0.011 2.4E-07 68.8 6.1 8 485-492 265-272 (293)
10 KOG3973 Uncharacterized conser 94.6 0.036 7.7E-07 64.4 4.5 9 16-24 308-316 (465)
11 KOG3915 Transcription regulato 94.5 0.028 6.2E-07 67.1 3.5 12 179-190 200-211 (641)
12 PLN03138 Protein TOC75; Provis 93.9 0.046 1E-06 70.8 4.0 29 382-412 282-310 (796)
13 PLN03138 Protein TOC75; Provis 92.8 0.094 2E-06 68.1 4.3 14 198-211 182-195 (796)
14 KOG3915 Transcription regulato 92.6 0.11 2.3E-06 62.4 4.0 14 379-392 197-211 (641)
15 PHA00370 III attachment protei 91.5 0.37 8E-06 54.4 6.4 16 161-176 257-272 (297)
16 PHA00370 III attachment protei 89.2 0.49 1.1E-05 53.5 4.9 13 81-93 148-160 (297)
17 COG4371 Predicted membrane pro 87.2 0.72 1.6E-05 52.1 4.6 7 202-208 181-187 (334)
18 KOG1596 Fibrillarin and relate 86.6 1.2 2.6E-05 50.7 5.8 14 484-497 288-301 (317)
19 KOG3074 Transcriptional regula 85.7 0.25 5.4E-06 55.2 0.1 18 69-86 23-40 (263)
20 KOG1308 Hsp70-interacting prot 85.1 2.2 4.7E-05 50.9 7.2 34 96-130 337-376 (377)
21 COG4371 Predicted membrane pro 83.0 1.7 3.7E-05 49.2 5.0 16 118-133 181-196 (334)
22 PF02084 Bindin: Bindin; Inte 78.7 22 0.00048 40.3 11.6 9 127-135 137-145 (238)
23 PF04285 DUF444: Protein of un 73.2 4.6 0.0001 49.8 5.2 15 198-212 185-199 (421)
24 PF13865 FoP_duplication: C-te 71.8 11 0.00024 35.8 6.2 27 73-99 37-67 (74)
25 cd07354 HN_L-delphilin-R1_like 70.2 15 0.00032 35.5 6.6 68 163-231 3-72 (80)
26 PTZ00110 helicase; Provisional 68.3 12 0.00025 47.9 7.5 10 751-760 414-423 (545)
27 cd07354 HN_L-delphilin-R1_like 67.9 16 0.00034 35.3 6.3 68 79-147 3-72 (80)
28 COG4174 ABC-type uncharacteriz 67.5 12 0.00027 43.3 6.5 29 83-111 83-111 (364)
29 KOG3074 Transcriptional regula 67.3 3.5 7.5E-05 46.5 2.2 10 184-193 71-80 (263)
30 KOG3262 H/ACA small nucleolar 66.6 10 0.00022 41.6 5.4 16 214-229 128-143 (215)
31 PRK10930 FtsH protease regulat 66.1 6.3 0.00014 48.8 4.3 16 382-397 302-317 (419)
32 PF05387 Chorion_3: Chorion fa 66.0 6.2 0.00014 44.7 3.8 17 78-94 70-86 (277)
33 PF07466 DUF1517: Protein of u 64.8 12 0.00026 44.2 6.1 19 199-217 138-156 (289)
34 PF04285 DUF444: Protein of un 61.5 16 0.00034 45.3 6.5 18 160-177 161-178 (421)
35 PF07655 Secretin_N_2: Secreti 60.8 11 0.00024 37.5 4.1 29 65-93 52-80 (98)
36 PF05642 Sporozoite_P67: Sporo 59.5 13 0.00029 46.6 5.3 11 403-413 371-381 (727)
37 PRK04537 ATP-dependent RNA hel 59.1 16 0.00034 47.0 6.3 10 371-380 556-565 (572)
38 PF05642 Sporozoite_P67: Sporo 56.4 17 0.00038 45.7 5.6 7 374-380 363-369 (727)
39 KOG4462 WASP-interacting prote 56.3 11 0.00024 44.9 3.8 9 10-18 40-48 (437)
40 PRK05325 hypothetical protein; 52.2 17 0.00038 44.7 4.7 17 161-177 146-162 (401)
41 KOG3875 Peroxisomal biogenesis 50.2 27 0.00059 41.3 5.6 13 203-215 180-192 (362)
42 PF04094 DUF390: Protein of un 48.5 27 0.00059 45.3 5.6 9 129-137 196-204 (828)
43 PF11867 DUF3387: Domain of un 46.6 64 0.0014 38.8 8.3 47 166-212 178-229 (335)
44 KOG0775 Transcription factor S 44.2 56 0.0012 38.2 6.7 15 129-143 77-91 (304)
45 PF04228 Zn_peptidase: Putativ 44.0 23 0.00049 42.0 3.9 14 166-179 152-165 (292)
46 PF12174 RST: RCD1-SRO-TAF4 (R 41.8 65 0.0014 30.5 5.7 45 371-415 13-57 (70)
47 TIGR02877 spore_yhbH sporulati 40.9 27 0.00059 42.5 3.9 31 387-427 317-347 (371)
48 KOG1924 RhoA GTPase effector D 40.1 50 0.0011 43.3 6.1 19 679-697 968-986 (1102)
49 PF07466 DUF1517: Protein of u 39.9 46 0.00099 39.5 5.5 8 10-17 9-16 (289)
50 KOG1456 Heterogeneous nuclear 38.8 25 0.00054 42.4 3.1 20 131-150 46-65 (494)
51 PF04094 DUF390: Protein of un 37.7 35 0.00075 44.3 4.3 6 142-147 165-170 (828)
52 KOG1456 Heterogeneous nuclear 37.6 29 0.00063 41.9 3.4 26 401-428 360-385 (494)
53 KOG3570 MAPK-activating protei 37.2 30 0.00065 45.4 3.6 37 640-676 903-940 (1588)
54 PF08963 DUF1878: Protein of u 36.9 45 0.00097 34.3 4.1 65 364-428 41-110 (113)
55 PRK05325 hypothetical protein; 35.1 45 0.00098 41.2 4.6 10 387-396 338-347 (401)
56 KOG1924 RhoA GTPase effector D 34.6 76 0.0017 41.8 6.5 17 371-390 806-822 (1102)
57 KOG0775 Transcription factor S 32.8 45 0.00098 38.9 3.8 7 213-219 131-137 (304)
58 KOG0339 ATP-dependent RNA heli 32.2 60 0.0013 41.0 4.9 10 84-93 659-668 (731)
59 COG5324 Uncharacterized conser 30.5 60 0.0013 40.7 4.5 126 558-690 523-680 (758)
60 KOG3543 Ca2+-dependent activat 28.7 3.4E+02 0.0074 35.2 10.4 19 524-542 623-641 (1218)
61 TIGR02877 spore_yhbH sporulati 28.3 66 0.0014 39.4 4.4 14 163-176 160-173 (371)
62 KOG3590 Protein kinase A ancho 27.3 1.1E+02 0.0024 37.7 5.8 15 91-105 117-131 (602)
63 KOG3875 Peroxisomal biogenesis 27.1 3.9E+02 0.0086 32.2 10.0 9 101-109 149-157 (362)
64 PF09060 L27_N: L27_N; InterP 26.9 66 0.0014 28.4 2.9 28 1224-1252 2-29 (49)
65 KOG0037 Ca2+-binding protein, 26.6 69 0.0015 36.5 3.8 16 161-176 115-130 (221)
66 PF14181 YqfQ: YqfQ-like prote 26.4 60 0.0013 35.4 3.2 9 82-90 55-63 (161)
67 PF08349 DUF1722: Protein of u 25.8 1.4E+02 0.003 30.6 5.6 50 368-417 54-103 (117)
68 KOG3091 Nuclear pore complex, 25.1 1.1E+02 0.0023 38.7 5.4 7 500-506 324-330 (508)
69 KOG0037 Ca2+-binding protein, 23.1 85 0.0018 35.8 3.7 26 95-121 56-81 (221)
70 PF09579 Spore_YtfJ: Sporulati 23.0 36 0.00078 33.1 0.8 8 98-105 69-76 (83)
71 TIGR03601 B_an_ocin probable h 22.8 79 0.0017 29.8 2.8 7 12-18 26-32 (79)
72 cd07347 harmonin_N_like N-term 22.7 2.5E+02 0.0053 27.4 6.2 60 370-430 6-67 (78)
73 PLN02705 beta-amylase 22.6 68 0.0015 41.4 3.1 10 1186-1195 559-568 (681)
74 TIGR02874 spore_ytfJ sporulati 22.4 34 0.00073 35.9 0.5 76 38-128 46-122 (125)
75 KOG1308 Hsp70-interacting prot 22.0 1.2E+02 0.0027 36.8 4.9 8 3-10 250-257 (377)
76 PF14775 NYD-SP28_assoc: Sperm 21.9 1.6E+02 0.0036 27.0 4.7 56 372-427 2-60 (60)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-154 Score=1365.45 Aligned_cols=943 Identities=29% Similarity=0.435 Sum_probs=690.0
Q ss_pred CCCCCCCcccchhhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccc
Q 000561 68 AGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEI 147 (1419)
Q Consensus 68 gg~g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~~Vi~rV~~LF~ghpdLI~GFN~FLP~gy~I 147 (1419)
......++++|.||++||++||.+|..+|++|+.|||||+|||+|.||++|||+||+.||+|+|+||+|||+|||+||+|
T Consensus 118 p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYki 197 (1163)
T COG5602 118 PPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKI 197 (1163)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC--------------------------------------------CC-------------CCCcccHHHHHHHHH
Q 000561 148 TLDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVN 170 (1419)
Q Consensus 148 ~l~~de--------------------------------------------~p-------------p~~~vef~~Ai~fvn 170 (1419)
+++.+. || ++..+.|++||.|||
T Consensus 198 e~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vn 277 (1163)
T COG5602 198 EGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVN 277 (1163)
T ss_pred EEecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHH
Confidence 874210 10 023467999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCCCccccCCcccCCCC
Q 000561 171 KIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNER 250 (1419)
Q Consensus 171 KIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~~~~~~~~n~~~~~r 250 (1419)
+||.||+++|+.|..||++|+.|++.+++|++||.+|+.||+++|||+++|+.|||+....+.+..+.. +. .
T Consensus 278 kVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~a---q~-----p 349 (1163)
T COG5602 278 KVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANA---QK-----P 349 (1163)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcccccccccccccc---CC-----C
Confidence 999999999999999999999999999999999999999999999999999999999865442111100 00 1
Q ss_pred CCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCCcccccccccccccc
Q 000561 251 SAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFN 330 (1419)
Q Consensus 251 ~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~~~~~~~~~~~~~~~ 330 (1419)
+..+|+.+.+...+.- +.++.+++. ...|.. . .+..+ .+ .+...++.
T Consensus 350 ~~~lPPiG~Fs~p~~a-~~~~~ps~~-----~~~p~~-----~-----------~~~~~---~r--------~d~~~S~s 396 (1163)
T COG5602 350 SKRLPPIGSFSLPTAA-PEQNRPSLL-----WESPRS-----I-----------SNISR---YR--------ADLLTSFS 396 (1163)
T ss_pred cccCCCCCCCCCCCcc-cccCChHHh-----hcCcch-----h-----------ccccc---cc--------cchhhhhh
Confidence 2234444433322100 000000000 000000 0 00000 00 00000010
Q ss_pred cccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 000561 331 LQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNLV 409 (1419)
Q Consensus 331 ~q~~p~k~~~~~~~~~~~~~p~~~~~~~~~a~k~~~~~El~FFdKVKk~L~-~~~Y~eFLK~LnLYsqeiI~r~ELv~lV 409 (1419)
.+-.|.+. . .|.+. ..++.-.||++||..|. ...|++||||||||+|+|||+++||+++
T Consensus 397 ~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lver~ 456 (1163)
T COG5602 397 RNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVERL 456 (1163)
T ss_pred hhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 11111110 0 12110 01122279999999999 9999999999999999999999999999
Q ss_pred HHHhccChHHHHHHhhhhccccccccccccccccccccCCCCCccccccccchhhhhhhhhHhhhhhhhhhhhhhccccc
Q 000561 410 TDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQE 489 (1419)
Q Consensus 410 ~~fLG~~PDLm~~Fk~FLg~~e~~~~~~~g~~~~~~l~~~g~~~~~~~~~~~dr~~~~~~~~~ker~~~~~k~~~kp~~e 489 (1419)
-.|||.+.+||.|||+|++|.+... .| + +-..
T Consensus 457 ~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~----------------~-------------~~~~ 488 (1163)
T COG5602 457 FAFLGSNEELIRWFKAFINYSEPEK-------------------EP----------------L-------------RETR 488 (1163)
T ss_pred HHHhcCcHHHHHHHHHHhccCCCCC-------------------CC----------------c-------------cccc
Confidence 9999999999999999999975210 00 0 0023
Q ss_pred cccCCCcccCcccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhcccchhhHHHHHH
Q 000561 490 LDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLE 568 (1419)
Q Consensus 490 ldls~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfE~D~~IE 568 (1419)
.|++.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+||
T Consensus 489 ~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~Ie 568 (1163)
T COG5602 489 KDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHIE 568 (1163)
T ss_pred cCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHHHH
Q 000561 569 SVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQKQ 643 (1419)
Q Consensus 569 ~~~~ti~~Le~l~~~i~~~~~e~~~~~~l~~~l----~~i~~R~I~riYG-d~g~evi~~l~knP~~alPvVL~RLKqK~ 643 (1419)
++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+|+
T Consensus 569 a~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~Kd 648 (1163)
T COG5602 569 ATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKD 648 (1163)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHhh
Confidence 999999999999999999998888888888766 5899999999999 79999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhcccCccccccccccccchhHHHHHHHHHHHhhhccchhHHHhhhCCCCCCCCCce
Q 000561 644 EEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLE 723 (1419)
Q Consensus 644 eEWr~aq~e~nkvWrev~~Kny~KSLDH~~~~FKq~DkK~ls~K~Lv~EIe~i~ee~~~e~~~~~~~~~g~~~~~~p~l~ 723 (1419)
+|||+|+|+|||+||+|.+|||+|||||||++||+.|||.|++|.||.||+.++.++..- +. +....-++.
T Consensus 649 ~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fqf~ 719 (1163)
T COG5602 649 EEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQFV 719 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Cccccceee
Confidence 999999999999999999999999999999999999999999999999999776643211 11 122356899
Q ss_pred eecCChhHHHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHhhhcccCCCCCCCCccchhhhhccccCCCCCCCCCcccCC
Q 000561 724 YGYSDSNIHEDLYKLVQYSCEEMCS-TKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESD 802 (1419)
Q Consensus 724 f~y~D~~I~~D~~~li~~~~~~~~~-~~~~~~ki~~~~~~Fl~~~f~i~~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~ 802 (1419)
|.|+|.-|+.|++.|..-..-.+++ +..+++++..++.+||..||++-.-- .+..+-... ..+.+
T Consensus 720 fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~-------~nv~~-- 785 (1163)
T COG5602 720 FVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERL-------LNVKG-- 785 (1163)
T ss_pred eecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhh-------ccccc--
Confidence 9999999999999986533332222 35788999999999999999854210 111111100 00000
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCccccccccccccccCCCccccccccccccccccccchhhhhhhhhhccccccccccc
Q 000561 803 GSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSG 882 (1419)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 882 (1419)
.|.+. ++ +.|..++ .
T Consensus 786 -----------------~ni~g-----------------~k--------~~r~srs-----------------------~ 800 (1163)
T COG5602 786 -----------------LNIDG-----------------LK--------ADRSSRS-----------------------D 800 (1163)
T ss_pred -----------------cccCC-----------------cc--------ccccccc-----------------------c
Confidence 00000 00 0000000 0
Q ss_pred hhhhhhhcccccCCCCCCcccccCCCCCCCcccccCCCCCCCccccccccccCCCCCCCCcccccCCCCCcccccccccc
Q 000561 883 IIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALR 962 (1419)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 962 (1419)
...| .+.... +|-+
T Consensus 801 ~~~q---~~s~vk--------------------------------------------------------------sgn~- 814 (1163)
T COG5602 801 ESAQ---RYSKVK--------------------------------------------------------------SGNL- 814 (1163)
T ss_pred hhhh---hHHHhh--------------------------------------------------------------cccc-
Confidence 0000 000000 0000
Q ss_pred cCcccccccccCCCCCccccccCccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCCCC
Q 000561 963 DGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADA 1042 (1419)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~ereegelsp~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a 1042 (1419)
+.++ +.+++++-
T Consensus 815 ~qvs--------------~q~de~ai------------------------------------------------------ 826 (1163)
T COG5602 815 EQVS--------------KQIDEYAI------------------------------------------------------ 826 (1163)
T ss_pred hhcc--------------cCCchhHH------------------------------------------------------
Confidence 0000 00000000
Q ss_pred CccccCCccccCCCCCCCCCCCCccccchhhhhhcccccccCCccccccccccCccccccCCCCCCCCchhhhhcccCcc
Q 000561 1043 DDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPL 1122 (1419)
Q Consensus 1043 d~e~s~~~s~~~~~~s~~es~~~e~~~~~~~~e~~~~~~~~d~k~~s~gea~~~~~~~~~~~d~~~~~~~~~~~~~~kpl 1122 (1419)
+|| .. +.+ +| ++.++ .+.-.|.+. .
T Consensus 827 ede-------~k---~p~-----hp--d~l~e------------------------h~~skgi~e-----n--------- 851 (1163)
T COG5602 827 EDE-------IK---EPT-----HP--DGLKE------------------------HNISKGISE-----N--------- 851 (1163)
T ss_pred HHH-------hc---CCC-----CC--chHHH------------------------hhhhhccch-----h---------
Confidence 000 00 000 00 00000 000001100 0
Q ss_pred cccCCCCcccccCccceeeecCchHhHHHHHHHHHHHHHHHHHhchhhhhhcccCCCCCchHHHHHHHHHHHHhhcCCCC
Q 000561 1123 AKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSID 1202 (1419)
Q Consensus 1123 a~~~~~~~~~~~~~~~~FfgN~~~YvFfRL~qiLYeRL~~~K~~~~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG~iD 1202 (1419)
.++ -....||||.++||||||+..+||||+.+|....+..+- .....-|.+.|.+|++|+.|.++
T Consensus 852 ek~---------~i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~l~ 916 (1163)
T COG5602 852 EKQ---------VIALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGALT 916 (1163)
T ss_pred hHH---------HHHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhcccc
Confidence 001 112469999999999999999999999999766554321 12234899999999999999999
Q ss_pred chhhHHHHHhhhCCCceeeeeHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcCCC-ccccHHHHHHHHhhc-CCCCE
Q 000561 1203 NAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPG-KQIDSVYYENARVLL-HEENI 1280 (1419)
Q Consensus 1203 ~~~FED~lR~~fg~~aY~lFTiDKLI~~lvKQlq~ivsDe~~~~ll~L~~~Er~r~~~-~~~ei~Yr~~Ae~ll-~DEn~ 1280 (1419)
+.+||+.+|.+|++++|++||||||.+.|+||+|+|++|.|...++.||....+..++ ...++.||..+|.+| +||+|
T Consensus 917 ~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e~~ 996 (1163)
T COG5602 917 PCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDEIL 996 (1163)
T ss_pred HHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchhhe
Confidence 9999999999999999999999999999999999999999999999999776665543 357899999999776 89999
Q ss_pred EEEEEecCCCeEEEEEecCC---cCCccccccCCchHHHHHhhhhhcccccCCC----CCCcccccCccccccCchhhHH
Q 000561 1281 YRIQLSSSPSRLSIQLMDNV---IEKPEAFAVTMDPNFAAYLLNDFLSAFLGKK----EPHAVVLRRNKRRFEGLDELSA 1353 (1419)
Q Consensus 1281 yRie~~~~~~~ltIqLld~~---~d~~e~~~~s~d~~w~~Yv~s~fv~~~pte~----~~~~vFL~RNl~~~~~~~e~~~ 1353 (1419)
|||+|.+.-+++.||.|-.. .+++.++ ...|.+||+ +|.-.++||| ..+.|||.|||.+-+..+....
T Consensus 997 Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~~----~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~v~~l~s 1071 (1163)
T COG5602 997 FRFCWINKFKSFGIQIMKRADLTVDQSLDT----QRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERTVEQLVS 1071 (1163)
T ss_pred eeeeecchhheeeeeEeeccccccccccCh----HHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhhHHHHHh
Confidence 99999999999999999442 2222222 237999999 7998899998 3589999999987432222100
Q ss_pred --HhhhccCceeecCcEEEEecCceeEEEEcCCceEEEEecccccccccchhhhHHHHHHHHhhhc
Q 000561 1354 --ACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLS 1417 (1419)
Q Consensus 1354 --~~~~~~~v~v~~gLeckI~~~SyK~~Yv~~TED~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1417 (1419)
.......-...+||+..+|+.|||++|.|+|||..+-....+..- ..-..+++|.+||++|++
T Consensus 1072 ~~q~~l~~~h~~~s~lq~f~~~dt~k~~~~pnte~~yi~~s~l~~~~-s~fldcq~rk~~wr~We~ 1136 (1163)
T COG5602 1072 RLQTKLLRSHELVSGLQAFLCLDTFKLLYLPNTEDSYIDASYLRLRD-SDFLDCQKRKQRWRNWES 1136 (1163)
T ss_pred hhhHHHHHHHHHhccceeeeeeccceeeeccCCccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence 001111224468999999999999999999999988666555111 112346789999999986
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=2.8e-43 Score=338.22 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.6
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHHhhcccchhhHHHHHHHHHH
Q 000561 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 572 (1419)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~-SED~~F~~~rKNqyEE~LfrcEDERfE~D~~IE~~~~ 572 (1419)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000561 573 TAKRAEELLNSINENKITLET 593 (1419)
Q Consensus 573 ti~~Le~l~~~i~~~~~e~~~ 593 (1419)
||++||+|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887654
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=2.6e-41 Score=326.94 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.3
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHHhhcccchhhHHHHHHHHHHH
Q 000561 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 573 (1419)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~SED~~F~~~rKNqyEE~LfrcEDERfE~D~~IE~~~~t 573 (1419)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000561 574 AKRAEELLNSINENKITLET 593 (1419)
Q Consensus 574 i~~Le~l~~~i~~~~~e~~~ 593 (1419)
|+.|++|+++|..|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999987664
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-38 Score=347.49 Aligned_cols=160 Identities=63% Similarity=1.040 Sum_probs=148.4
Q ss_pred CCcccchhhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccccCCCC
Q 000561 73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDED 152 (1419)
Q Consensus 73 ~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~~Vi~rV~~LF~ghpdLI~GFN~FLP~gy~I~l~~d 152 (1419)
.+.++++||++||++||.+|+++|++|++||+||+|||+++||+++||+||++||+|||+||+|||+|||+||+|+++.+
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred C-------------CCCCCc-----------ccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 000561 153 E-------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVA 208 (1419)
Q Consensus 153 e-------------~pp~~~-----------vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va 208 (1419)
. .+++.. +++.+|++|+||||+||++++++|++||+||+||+++++++.+||++|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~ 173 (231)
T KOG4204|consen 94 AKDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVE 173 (231)
T ss_pred cccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 1 123333 8899999999999999999999999999999999999999999999999
Q ss_pred HhhccChhHHHHHhhhCCCCCCCc
Q 000561 209 SLFEDHADLLEEFTRFLPDTSATS 232 (1419)
Q Consensus 209 ~LF~~hpDLL~eF~~FLP~~~~~~ 232 (1419)
.||++|+||+.+|..|||......
T Consensus 174 ~L~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 174 ALLQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HHHccCHHHHHHHHhhccCCcccc
Confidence 999999999999999999985543
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.82 E-value=1.1e-19 Score=201.04 Aligned_cols=178 Identities=24% Similarity=0.440 Sum_probs=137.6
Q ss_pred CCcccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000561 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1419)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1419)
...+++++|++||++||.+|+++|++|.+||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||..........
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999987765211
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000561 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1419)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~ 316 (1419)
+.. . .+++... ...|.+.
T Consensus 94 ~~~-----~------~~~~~~~-----------------------~~~~~~~---------------------------- 111 (231)
T KOG4204|consen 94 AKD-----E------FTIYGAT-----------------------SYLPSPK---------------------------- 111 (231)
T ss_pred ccc-----c------ccccccc-----------------------ccCCCcc----------------------------
Confidence 100 0 0000000 0000000
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000561 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1419)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~p~k~~~~~~~~~~~~~p~~~~~~~~~a~k~~~~~El~FFdKVKk~L~--~~~Y~eFLK~LnL 394 (1419)
.. ++ .. -...++. ..+.+++.|.+|||+++. .++|+.||.+|++
T Consensus 112 ----------~~-----~~--~~---~~~~~~~--------------~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~ 157 (231)
T KOG4204|consen 112 ----------VA-----FH--EE---ILKLLED--------------VEFDRAISFVNKLKTRFQGDDHVYKSFLEILRM 157 (231)
T ss_pred ----------cc-----cc--ch---hhhhccc--------------chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00 00 00 0000010 145678999999999999 7899999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000561 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1419)
Q Consensus 395 YsqeiI~r~ELv~lV~~fLG~~PDLm~~Fk~FLg~~ 430 (1419)
|.++-.+..|+.+.|..+|++|+||+.+|..||..+
T Consensus 158 y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~ 193 (231)
T KOG4204|consen 158 YQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTD 193 (231)
T ss_pred HhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999754
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.81 E-value=3.1e-19 Score=215.81 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=143.8
Q ss_pred CCcccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000561 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1419)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1419)
-+++++.+|++||++||.+|..+|++|..||+||++|+.+.+++.+|+++|+.||+|.|+||++|+.|||..+....+.+
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999987765221
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000561 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1419)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~ 316 (1419)
.+ .+ .+... ++|++..+.++- ......+...++....+|.++.
T Consensus 203 ~~--~~--s~l~v---tTP~gp~s~~pv---~ss~y~a~~n~~qrts~p~lps--------------------------- 245 (1163)
T COG5602 203 QP--NG--SRLHV---TTPQGPLSSPPV---QSSYYVAPCNHDQRTSHPTLPS--------------------------- 245 (1163)
T ss_pred CC--CC--Ceeee---cCCCCCCCCCCc---ccccccccccccccccCCCCcc---------------------------
Confidence 10 00 01111 112111100000 0000000000000011111000
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000561 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1419)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~p~k~~~~~~~~~~~~~p~~~~~~~~~a~k~~~~~El~FFdKVKk~L~--~~~Y~eFLK~LnL 394 (1419)
+ .|+ +.-++..+++ +...-....++++++|..|||.++. ++.|.+||.+|.-
T Consensus 246 -----------~--~Q~-----------e~s~~~~~~s--d~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrt 299 (1163)
T COG5602 246 -----------D--SQP-----------EPSAPSHMPS--DARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRT 299 (1163)
T ss_pred -----------c--cCC-----------CCCCcccCCc--ccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 0 000 0000000000 0000111257899999999999999 9999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000561 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1419)
Q Consensus 395 YsqeiI~r~ELv~lV~~fLG~~PDLm~~Fk~FLg~~ 430 (1419)
|..+.-+.+|++..|+.+|..+|||+++||.||...
T Consensus 300 yq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 300 YQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccc
Confidence 999999999999999999999999999999999753
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.28 E-value=3.2e-12 Score=108.54 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCC
Q 000561 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1419)
Q Consensus 96 p~~Y~~FLeImkdfk~~~id~~~Vi~rV~~LF~ghpdLI~GFN~FLP 142 (1419)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.22 E-value=1.5e-11 Score=104.49 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000561 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1419)
Q Consensus 180 p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP 226 (1419)
|++|++||+||++|+++.++..+|+++|+.||++||||+.+|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=95.93 E-value=0.011 Score=68.77 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.4
Q ss_pred cccccccc
Q 000561 485 KSIQELDL 492 (1419)
Q Consensus 485 kp~~eldl 492 (1419)
+++..++|
T Consensus 265 ~~~e~v~L 272 (293)
T PTZ00146 265 KPKEQLTL 272 (293)
T ss_pred ceEEEEec
Confidence 33444444
No 10
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.59 E-value=0.036 Score=64.40 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.8
Q ss_pred CCccCCCCC
Q 000561 16 RPLTTAPPR 24 (1419)
Q Consensus 16 ~~~~~~~~~ 24 (1419)
||+--+||.
T Consensus 308 R~nE~~ppp 316 (465)
T KOG3973|consen 308 RTNEMVPPP 316 (465)
T ss_pred CcccCCCCC
Confidence 344444443
No 11
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=94.49 E-value=0.028 Score=67.09 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHH
Q 000561 179 DEHVYKSFLEIL 190 (1419)
Q Consensus 179 ~p~vYk~FLeIL 190 (1419)
=|.+|.-||+-|
T Consensus 200 LPQafdlFLKhl 211 (641)
T KOG3915|consen 200 LPQAFDLFLKHL 211 (641)
T ss_pred cHHHHHHHHHHH
Confidence 356666666643
No 12
>PLN03138 Protein TOC75; Provisional
Probab=93.90 E-value=0.046 Score=70.85 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000561 382 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDL 412 (1419)
Q Consensus 382 ~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~f 412 (1419)
+++.+||+..+ +.++.+++++|..-+..|
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I 310 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRV 310 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHH
Confidence 67788888777 466678888877665543
No 13
>PLN03138 Protein TOC75; Provisional
Probab=92.83 E-value=0.094 Score=68.13 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=7.3
Q ss_pred CcHHHHHHHHHHhh
Q 000561 198 KDINEVYSEVASLF 211 (1419)
Q Consensus 198 ~si~eV~~~Va~LF 211 (1419)
.+..+|.+.+..|+
T Consensus 182 ~trsqLq~dv~~I~ 195 (796)
T PLN03138 182 YTKAQLQKELETLA 195 (796)
T ss_pred cCHHHHHHHHHHHH
Confidence 34455555555554
No 14
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=92.57 E-value=0.11 Score=62.39 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=9.9
Q ss_pred hcC-hHHHHHHHHHH
Q 000561 379 KLC-SDDYQAFLKCL 392 (1419)
Q Consensus 379 ~L~-~~~Y~eFLK~L 392 (1419)
.|+ +++|+-|||.|
T Consensus 197 miCLPQafdlFLKhl 211 (641)
T KOG3915|consen 197 LICLPQAFDLFLKHL 211 (641)
T ss_pred EEecHHHHHHHHHHH
Confidence 455 77777787765
No 15
>PHA00370 III attachment protein
Probab=91.53 E-value=0.37 Score=54.44 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHHHHHc
Q 000561 161 EFEEAITFVNKIKKRF 176 (1419)
Q Consensus 161 ef~~Ai~fvnKIK~RF 176 (1419)
+|...-..|+.||-.|
T Consensus 257 e~~I~CdKId~~k~v~ 272 (297)
T PHA00370 257 EFIIGCDKINDFKGVF 272 (297)
T ss_pred hhhhcchhHHHHHHHH
Confidence 3334445555555444
No 16
>PHA00370 III attachment protein
Probab=89.22 E-value=0.49 Score=53.51 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=6.5
Q ss_pred hhhhHHHHHHhhh
Q 000561 81 ALTYLKEVKDMFQ 93 (1419)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1419)
+..--+++|..+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 3333456666554
No 17
>COG4371 Predicted membrane protein [Function unknown]
Probab=87.20 E-value=0.72 Score=52.10 Aligned_cols=7 Identities=43% Similarity=0.482 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 000561 202 EVYSEVA 208 (1419)
Q Consensus 202 eV~~~Va 208 (1419)
.|.++-+
T Consensus 181 ~vlQEA~ 187 (334)
T COG4371 181 RVLQEAA 187 (334)
T ss_pred HHHHHHH
Confidence 3333333
No 18
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.57 E-value=1.2 Score=50.68 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.0
Q ss_pred hccccccccCCCcc
Q 000561 484 AKSIQELDLSNCQR 497 (1419)
Q Consensus 484 ~kp~~eldls~c~r 497 (1419)
.+|...+-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 45555666665554
No 19
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=85.67 E-value=0.25 Score=55.21 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=12.1
Q ss_pred CCCCCCcccchhhhhhHH
Q 000561 69 GMGTSQKLTTSDALTYLK 86 (1419)
Q Consensus 69 g~g~~~~~~~~dAl~YL~ 86 (1419)
..-.+..|.++.-.-||+
T Consensus 23 ~eLask~l~iq~KrfYlD 40 (263)
T KOG3074|consen 23 QELASKRLQIQHKRFYLD 40 (263)
T ss_pred HHHhhhhhhhhhheEEEE
Confidence 344566777777777775
No 20
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.09 E-value=2.2 Score=50.88 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=20.7
Q ss_pred hHHHHHHHHHH------HHHHhccCChhhHHHHHHHHhccC
Q 000561 96 REKYDMFLEVM------KDFKAQRTDTAGVIARVKDLFKGH 130 (1419)
Q Consensus 96 p~~Y~~FLeIm------kdfk~~~id~~~Vi~rV~~LF~gh 130 (1419)
|++--.|.++| -.|.+.. -+..||..++.+|-|-
T Consensus 337 p~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 337 PEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred hHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 44445555553 3444432 2467899999999874
No 21
>COG4371 Predicted membrane protein [Function unknown]
Probab=82.98 E-value=1.7 Score=49.24 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=8.6
Q ss_pred hHHHHHHHHhccChhh
Q 000561 118 GVIARVKDLFKGHNNL 133 (1419)
Q Consensus 118 ~Vi~rV~~LF~ghpdL 133 (1419)
.|++...-.+-.||+-
T Consensus 181 ~vlQEA~LalLRHPEy 196 (334)
T COG4371 181 RVLQEAALALLRHPEY 196 (334)
T ss_pred HHHHHHHHHHHcCCce
Confidence 3555555555556654
No 22
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=78.71 E-value=22 Score=40.27 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=5.4
Q ss_pred hccChhhhh
Q 000561 127 FKGHNNLIF 135 (1419)
Q Consensus 127 F~ghpdLI~ 135 (1419)
|+.|-+|+.
T Consensus 137 LRHHSNLLA 145 (238)
T PF02084_consen 137 LRHHSNLLA 145 (238)
T ss_pred HHHHHHHHh
Confidence 455666665
No 23
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=73.20 E-value=4.6 Score=49.78 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=9.3
Q ss_pred CcHHHHHHHHHHhhc
Q 000561 198 KDINEVYSEVASLFE 212 (1419)
Q Consensus 198 ~si~eV~~~Va~LF~ 212 (1419)
..+.++-.+|..|..
T Consensus 185 ~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 185 RELRELEEELEELEA 199 (421)
T ss_pred ccHHHHHHHHHHHhc
Confidence 346666667766654
No 24
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=71.84 E-value=11 Score=35.78 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=14.6
Q ss_pred CCcccchh---hh-hhHHHHHHhhhcChHHH
Q 000561 73 SQKLTTSD---AL-TYLKEVKDMFQDQREKY 99 (1419)
Q Consensus 73 ~~~~~~~d---Al-~YL~~VK~~F~d~p~~Y 99 (1419)
.+++|.++ -| .|....+..+-.+-+-|
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y 67 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSY 67 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 12 67766666665444444
No 25
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=70.18 E-value=15 Score=35.47 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhh--ccChhHHHHHhhhCCCCCCC
Q 000561 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLF--EDHADLLEEFTRFLPDTSAT 231 (1419)
Q Consensus 163 ~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF--~~hpDLL~eF~~FLP~~~~~ 231 (1419)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++ ..|--|+++-..|+|.....
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 4689999999999999999989999999999664 45777778888777 46678999999999987654
No 26
>PTZ00110 helicase; Provisional
Probab=68.30 E-value=12 Score=47.92 Aligned_cols=10 Identities=0% Similarity=0.126 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 000561 751 DQLNKAMKLW 760 (1419)
Q Consensus 751 ~~~~ki~~~~ 760 (1419)
++++.++.-|
T Consensus 414 ~eR~~il~~F 423 (545)
T PTZ00110 414 EERTWVLNEF 423 (545)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 27
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=67.92 E-value=16 Score=35.27 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=56.9
Q ss_pred hhhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhcc--ChhhhhhhhccCCccccc
Q 000561 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEI 147 (1419)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~~Vi~rV~~LF~g--hpdLI~GFN~FLP~gy~I 147 (1419)
+-|..|..+|..-+.++|.+=....++++.|-+.+ ++..++..+.-++.. |--||...-.|+|.-++.
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 45889999999999999999999999999998755 677777777777765 556899999999986553
No 28
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.46 E-value=12 Score=43.29 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 000561 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1419)
Q Consensus 83 ~YL~~VK~~F~d~p~~Y~~FLeImkdfk~ 111 (1419)
..+++++.+|.=+...-+.|+..|.+|-.
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 46789999999544456899999999974
No 29
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=67.32 E-value=3.5 Score=46.54 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 000561 184 KSFLEILNMY 193 (1419)
Q Consensus 184 k~FLeIL~~y 193 (1419)
-.|+++|..|
T Consensus 71 aef~d~l~~f 80 (263)
T KOG3074|consen 71 AEFRDILNDF 80 (263)
T ss_pred HHHHHHHHHH
Confidence 3466666555
No 30
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=66.63 E-value=10 Score=41.62 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=10.7
Q ss_pred ChhHHHHHhhhCCCCC
Q 000561 214 HADLLEEFTRFLPDTS 229 (1419)
Q Consensus 214 hpDLL~eF~~FLP~~~ 229 (1419)
.||-|.=...|||...
T Consensus 128 ~p~KllPl~RFLP~p~ 143 (215)
T KOG3262|consen 128 DPDKLLPLDRFLPQPV 143 (215)
T ss_pred cccccCcHhhcCCCCC
Confidence 4555566678888773
No 31
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=66.13 E-value=6.3 Score=48.76 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHhhhc
Q 000561 382 SDDYQAFLKCLHIYSN 397 (1419)
Q Consensus 382 ~~~Y~eFLK~LnLYsq 397 (1419)
+-.=..|.++|.-|.+
T Consensus 302 eGda~rF~~i~~~Y~k 317 (419)
T PRK10930 302 QGEVARFAKLLPEYKA 317 (419)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 4445567777777764
No 32
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=65.96 E-value=6.2 Score=44.68 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.3
Q ss_pred chhhhhhHHHHHHhhhc
Q 000561 78 TSDALTYLKEVKDMFQD 94 (1419)
Q Consensus 78 ~~dAl~YL~~VK~~F~d 94 (1419)
--|+...|..|..+++.
T Consensus 70 ~peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 70 SPEEAGRAQRVQAQYGS 86 (277)
T ss_pred ChhHhhhhccchhhhcc
Confidence 37888999999999984
No 33
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=64.79 E-value=12 Score=44.22 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHhhccChhH
Q 000561 199 DINEVYSEVASLFEDHADL 217 (1419)
Q Consensus 199 si~eV~~~Va~LF~~hpDL 217 (1419)
-+..|.++++-.|--|||.
T Consensus 138 Gl~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHHhCcCc
Confidence 3456667766666666654
No 34
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=61.53 E-value=16 Score=45.33 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=10.4
Q ss_pred ccHHHHHHHHHHHHHHcC
Q 000561 160 VEFEEAITFVNKIKKRFH 177 (1419)
Q Consensus 160 vef~~Ai~fvnKIK~RF~ 177 (1419)
-.++-...+.+.|+.|.+
T Consensus 161 s~l~~~RTlr~al~Rria 178 (421)
T PF04285_consen 161 SNLDKKRTLREALKRRIA 178 (421)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 345556666666665553
No 35
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=60.82 E-value=11 Score=37.47 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCCCCCCCCCcccchhhhhhHHHHHHhhh
Q 000561 65 GMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1419)
Q Consensus 65 g~ggg~g~~~~~~~~dAl~YL~~VK~~F~ 93 (1419)
+.++.......++.....+|-+.|+..++
T Consensus 52 ~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 52 GGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CccccccCceEEEEEECCchHHHHHHHHH
Confidence 33345566788899999999988887664
No 36
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=59.52 E-value=13 Score=46.62 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 000561 403 NDLQNLVTDLL 413 (1419)
Q Consensus 403 ~ELv~lV~~fL 413 (1419)
+||-.||..||
T Consensus 371 ee~~~lv~tli 381 (727)
T PF05642_consen 371 EELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=59.11 E-value=16 Score=47.04 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.4
Q ss_pred hHHHHHHhhc
Q 000561 371 IFCDKVKEKL 380 (1419)
Q Consensus 371 ~FFdKVKk~L 380 (1419)
+|.-+|++++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 38
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=56.40 E-value=17 Score=45.68 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.6
Q ss_pred HHHHhhc
Q 000561 374 DKVKEKL 380 (1419)
Q Consensus 374 dKVKk~L 380 (1419)
.++|+.|
T Consensus 363 ~~lk~fl 369 (727)
T PF05642_consen 363 EKLKKFL 369 (727)
T ss_pred HHHHHHH
Confidence 3555554
No 39
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=56.27 E-value=11 Score=44.89 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=5.0
Q ss_pred CCCcccCCc
Q 000561 10 GGSQFKRPL 18 (1419)
Q Consensus 10 ~~~q~~~~~ 18 (1419)
-|-.+|...
T Consensus 40 KG~KLKK~~ 48 (437)
T KOG4462|consen 40 KGKKLKKAT 48 (437)
T ss_pred hcceeccee
Confidence 355666554
No 40
>PRK05325 hypothetical protein; Provisional
Probab=52.16 E-value=17 Score=44.67 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHHHHHcC
Q 000561 161 EFEEAITFVNKIKKRFH 177 (1419)
Q Consensus 161 ef~~Ai~fvnKIK~RF~ 177 (1419)
..+--..+.+.+|.|.+
T Consensus 146 ~l~~~RT~r~al~Rria 162 (401)
T PRK05325 146 NLDKKRTLREALKRRIA 162 (401)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 44445566677776654
No 41
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.24 E-value=27 Score=41.31 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHHhhccCh
Q 000561 203 VYSEVASLFEDHA 215 (1419)
Q Consensus 203 V~~~Va~LF~~hp 215 (1419)
+|..+...|+-.|
T Consensus 180 lyR~~l~~L~l~~ 192 (362)
T KOG3875|consen 180 LYRLLLKMLKLSP 192 (362)
T ss_pred HHHHHHHHhCCCc
Confidence 4555555555443
No 42
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=48.54 E-value=27 Score=45.25 Aligned_cols=9 Identities=22% Similarity=0.061 Sum_probs=4.0
Q ss_pred cChhhhhhh
Q 000561 129 GHNNLIFGF 137 (1419)
Q Consensus 129 ghpdLI~GF 137 (1419)
.||-|..-|
T Consensus 196 ~~p~~~~~~ 204 (828)
T PF04094_consen 196 TSPFLFVFF 204 (828)
T ss_pred CCchHhhhc
Confidence 344444444
No 43
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=46.60 E-value=64 Score=38.80 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=39.2
Q ss_pred HHHHH-HHHHHcCCChHHHHHHH----HHHHHHhhccCcHHHHHHHHHHhhc
Q 000561 166 ITFVN-KIKKRFHNDEHVYKSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1419)
Q Consensus 166 i~fvn-KIK~RF~~~p~vYk~FL----eIL~~y~~~~~si~eV~~~Va~LF~ 212 (1419)
..+++ +|+.++..+|..|++|- ++|..|+++.++..++++++..|-+
T Consensus 178 ~~~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 178 EKLLRDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34444 78999999999999888 4788899999999999999987643
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=44.19 E-value=56 Score=38.24 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=8.8
Q ss_pred cChhhhhhhhccCCc
Q 000561 129 GHNNLIFGFNTFLPK 143 (1419)
Q Consensus 129 ghpdLI~GFN~FLP~ 143 (1419)
|.-+-+.-|---||+
T Consensus 77 Gd~erL~rFlwsLp~ 91 (304)
T KOG0775|consen 77 GDIERLGRFLWSLPV 91 (304)
T ss_pred cCHHHHHHHHHcCch
Confidence 344555566666775
No 45
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=44.04 E-value=23 Score=42.01 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCC
Q 000561 166 ITFVNKIKKRFHND 179 (1419)
Q Consensus 166 i~fvnKIK~RF~~~ 179 (1419)
+.|++.++.+|...
T Consensus 152 ~~f~~~L~~~~ga~ 165 (292)
T PF04228_consen 152 LSFFDELQQRFGAS 165 (292)
T ss_pred hHHHHHHHHHhCCc
Confidence 35788888888654
No 46
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.82 E-value=65 Score=30.50 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=39.1
Q ss_pred hHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 000561 371 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 415 (1419)
Q Consensus 371 ~FFdKVKk~L~~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~fLG~ 415 (1419)
..|..+++.|.++..+.-.+..+-|-+..|+|+|++..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 367888888886777777788888899999999999999999995
No 47
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=40.89 E-value=27 Score=42.53 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000561 387 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1419)
Q Consensus 387 eFLK~LnLYsqeiI~r~ELv~lV~~fLG~~PDLm~~Fk~FL 427 (1419)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46777777755444320 23456777776534
No 48
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.15 E-value=50 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=13.9
Q ss_pred ccccccchhHHHHHHHHHH
Q 000561 679 QDSKNLSTKSLVAEIKQFK 697 (1419)
Q Consensus 679 ~DkK~ls~K~Lv~EIe~i~ 697 (1419)
.|-|-.+..-+++.|.+.+
T Consensus 968 Fd~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 968 FDPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred cCcccCcHHHHHHHHHHHH
Confidence 3666678888888887764
No 49
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=39.89 E-value=46 Score=39.50 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.9
Q ss_pred CCCcccCC
Q 000561 10 GGSQFKRP 17 (1419)
Q Consensus 10 ~~~q~~~~ 17 (1419)
+|+-|+.|
T Consensus 9 GG~SFssp 16 (289)
T PF07466_consen 9 GGGSFSSP 16 (289)
T ss_pred CCCCCCCC
Confidence 46666655
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=38.84 E-value=25 Score=42.41 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=12.8
Q ss_pred hhhhhhhhccCCccccccCC
Q 000561 131 NNLIFGFNTFLPKGYEITLD 150 (1419)
Q Consensus 131 pdLI~GFN~FLP~gy~I~l~ 150 (1419)
-||+.+...|=|-.|-...|
T Consensus 46 adl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 46 ADLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred hHHHHHHhcCCceEEEEecc
Confidence 46666666666666666554
No 51
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=37.68 E-value=35 Score=44.35 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.4
Q ss_pred Cccccc
Q 000561 142 PKGYEI 147 (1419)
Q Consensus 142 P~gy~I 147 (1419)
||+..+
T Consensus 165 Ppkwtf 170 (828)
T PF04094_consen 165 PPKWTF 170 (828)
T ss_pred CCCCcc
Confidence 334443
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=37.65 E-value=29 Score=41.86 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHhccChHHHHHHhhhhc
Q 000561 401 KRNDLQNLVTDLLGKYMDLMDEFNHFFE 428 (1419)
Q Consensus 401 ~r~ELv~lV~~fLG~~PDLm~~Fk~FLg 428 (1419)
++++-|.-+.+|| -||=--.||+|-+
T Consensus 360 SkQ~~v~~~~pfl--LpDgSpSfKdys~ 385 (494)
T KOG1456|consen 360 SKQNFVSPVQPFL--LPDGSPSFKDYSG 385 (494)
T ss_pred ccccccccCCcee--cCCCCcchhhccc
Confidence 4444444444444 1222234555544
No 53
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=37.21 E-value=30 Score=45.44 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhcccCcccc
Q 000561 640 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 676 (1419)
Q Consensus 640 KqK~eEWr~aq~e~nkvWrev~~K-ny~KSLDH~~~~F 676 (1419)
.+|.|+-+.-|+.-|.-=.++.-| --+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345555555554433222222222 2345678887764
No 54
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=36.87 E-value=45 Score=34.27 Aligned_cols=65 Identities=20% Similarity=0.418 Sum_probs=47.3
Q ss_pred hhhhhhhhHHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000561 364 SIYNQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1419)
Q Consensus 364 ~~~~~El~FFdKVKk~L~---~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~fL--G~~PDLm~~Fk~FLg 428 (1419)
....+-+..|+++.+.+. .+-|-.|-.+|..|...+..+=++-+-+..++ |-+++||.+|+.++.
T Consensus 41 eevee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 41 EEVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 344566789999999988 66678999999999987777766666677777 679999999999874
No 55
>PRK05325 hypothetical protein; Provisional
Probab=35.14 E-value=45 Score=41.21 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 000561 387 AFLKCLHIYS 396 (1419)
Q Consensus 387 eFLK~LnLYs 396 (1419)
+.|..+|+|.
T Consensus 338 ~llp~~~~f~ 347 (401)
T PRK05325 338 ELLPVCNYFA 347 (401)
T ss_pred HHHHHhhheE
Confidence 4444555543
No 56
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.56 E-value=76 Score=41.77 Aligned_cols=17 Identities=12% Similarity=0.655 Sum_probs=8.7
Q ss_pred hHHHHHHhhcChHHHHHHHH
Q 000561 371 IFCDKVKEKLCSDDYQAFLK 390 (1419)
Q Consensus 371 ~FFdKVKk~L~~~~Y~eFLK 390 (1419)
+-|+-||+. +.+..||+
T Consensus 806 ~ACEE~rkS---esFs~lLe 822 (1102)
T KOG1924|consen 806 AACEELRKS---ESFSKLLE 822 (1102)
T ss_pred HHHHHHHhh---hhHHHHHH
Confidence 345566653 44555554
No 57
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=32.79 E-value=45 Score=38.92 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=3.2
Q ss_pred cChhHHH
Q 000561 213 DHADLLE 219 (1419)
Q Consensus 213 ~hpDLL~ 219 (1419)
+|++|.+
T Consensus 131 ~h~~LQ~ 137 (304)
T KOG0775|consen 131 NHPKLQA 137 (304)
T ss_pred hhHHHHH
Confidence 4444444
No 58
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.24 E-value=60 Score=41.02 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.5
Q ss_pred hHHHHHHhhh
Q 000561 84 YLKEVKDMFQ 93 (1419)
Q Consensus 84 YL~~VK~~F~ 93 (1419)
-+..+|..|+
T Consensus 659 r~~~~r~af~ 668 (731)
T KOG0339|consen 659 RITAMRTAFQ 668 (731)
T ss_pred hHHHHHHHHH
Confidence 3455666654
No 59
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=30.48 E-value=60 Score=40.65 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=75.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccccccchhH------HHHHHHHhhCCCH--------HHHHHH
Q 000561 558 DDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSAL------NLRCIERLYGDHG--------LDVMDI 623 (1419)
Q Consensus 558 DERfE~D~~IE~~~~ti~~Le~l~~~i~~~~~e~~~~~~l~~~l~~i------~~R~I~riYGd~g--------~evi~~ 623 (1419)
|+..|+|.+|.+...|-+.|..+-+.|..+-++..+. +...+- |.-..++++|+.. .|+|++
T Consensus 523 d~~ield~~~~sl~nar~i~n~~~k~~p~lip~~p~d----dd~~~a~~~a~ey~pt~rk~~gn~~kkik~~itae~i~~ 598 (758)
T COG5324 523 DDIIELDPLIGSLENARRIVNYFKKNIPELIPNDPSD----DDYAAALNYAVEYVPTYRKTFGNDSKKIKNKITAEGITG 598 (758)
T ss_pred cceeecccccchhhhHHHHHHHHHhhCccccCCCCCc----hHHHHHHhhhhhcCchhhhhhCCchHHhhhheehhhccc
Confidence 6788999999999888888877777766655543321 222222 3334567777432 244444
Q ss_pred HH---hCcCcchhHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHH-------------hhhhhcccCccccccccccccc
Q 000561 624 LR---KNPAIALPVMLTRLKQKQEEW--TKCRSDFNKVWAEIYAK-------------NHYKSLDHRSFYFKQQDSKNLS 685 (1419)
Q Consensus 624 l~---knP~~alPvVL~RLKqK~eEW--r~aq~e~nkvWrev~~K-------------ny~KSLDH~~~~FKq~DkK~ls 685 (1419)
.. +....-.-++|. ||.-|- -..-.+.|+.|.+...+ |-.|+...|...-|..||-+++
T Consensus 599 ~~~c~~~~~~~f~~ll~---~k~~~~sl~~vlt~a~~~wq~~~~ryt~q~s~~~~~i~~sq~~~n~q~~~~k~t~km~fr 675 (758)
T COG5324 599 SSTCFKKAPRYFGVLLD---RKTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNSQHMHDKNTTKMGFR 675 (758)
T ss_pred hHHHHHHhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccccccccccccccee
Confidence 33 333333455665 454444 34446889999988766 3446666666666666666665
Q ss_pred hhHHH
Q 000561 686 TKSLV 690 (1419)
Q Consensus 686 ~K~Lv 690 (1419)
-.+|+
T Consensus 676 i~~l~ 680 (758)
T COG5324 676 ITHLV 680 (758)
T ss_pred EEEEe
Confidence 55444
No 60
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=28.67 E-value=3.4e+02 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=10.9
Q ss_pred cccCeeeecccCCCCcccc
Q 000561 524 VLNDHWVSVTSGSEDYSFK 542 (1419)
Q Consensus 524 VLND~WVS~t~~SED~~F~ 542 (1419)
-|||.+-|.-|-|--..|+
T Consensus 623 rlndsysclgwfspgqvfv 641 (1218)
T KOG3543|consen 623 RLNDSYSCLGWFSPGQVFV 641 (1218)
T ss_pred hcCCcchhccccCCCceee
Confidence 3666666666655544444
No 61
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=28.28 E-value=66 Score=39.38 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHc
Q 000561 163 EEAITFVNKIKKRF 176 (1419)
Q Consensus 163 ~~Ai~fvnKIK~RF 176 (1419)
+--..+.+.+|.|.
T Consensus 160 ~~~RT~r~al~Rri 173 (371)
T TIGR02877 160 DKKRTVIEALKRNQ 173 (371)
T ss_pred hHHHHHHHHHHHHh
Confidence 33444555555543
No 62
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=27.35 E-value=1.1e+02 Score=37.74 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=7.9
Q ss_pred hhhcChHHHHHHHHH
Q 000561 91 MFQDQREKYDMFLEV 105 (1419)
Q Consensus 91 ~F~d~p~~Y~~FLeI 105 (1419)
+.-++|-+..=|++-
T Consensus 117 ~il~D~~~LSYFiQY 131 (602)
T KOG3590|consen 117 QVLHDTIVLSYFIQY 131 (602)
T ss_pred HHhccchHHHHHHHH
Confidence 344566655555544
No 63
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=3.9e+02 Score=32.18 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000561 101 MFLEVMKDF 109 (1419)
Q Consensus 101 ~FLeImkdf 109 (1419)
.+|.|-..|
T Consensus 149 avi~Vae~F 157 (362)
T KOG3875|consen 149 AVISVAENF 157 (362)
T ss_pred HHHHHHHHH
Confidence 334443444
No 64
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=26.91 E-value=66 Score=28.40 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 000561 1224 LDKLLYRLCKQLQTVAADEMDNKLIQLYE 1252 (1419)
Q Consensus 1224 iDKLI~~lvKQlq~ivsDe~~~~ll~L~~ 1252 (1419)
||.|+++| |++||++.|..+++=++|..
T Consensus 2 leell~sL-k~iqh~L~D~qSQ~Dv~lll 29 (49)
T PF09060_consen 2 LEELLSSL-KHIQHCLNDSQSQQDVELLL 29 (49)
T ss_dssp HHHHHHHH-HHHHCCH-SHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhhccHhhHHhHHHHH
Confidence 56777764 99999999988777555543
No 65
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.61 E-value=69 Score=36.50 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHHHc
Q 000561 161 EFEEAITFVNKIKKRF 176 (1419)
Q Consensus 161 ef~~Ai~fvnKIK~RF 176 (1419)
+|..=.+||+.-++.|
T Consensus 115 EF~~Lw~~i~~Wr~vF 130 (221)
T KOG0037|consen 115 EFKALWKYINQWRNVF 130 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444556666655554
No 66
>PF14181 YqfQ: YqfQ-like protein
Probab=26.36 E-value=60 Score=35.44 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=4.5
Q ss_pred hhhHHHHHH
Q 000561 82 LTYLKEVKD 90 (1419)
Q Consensus 82 l~YL~~VK~ 90 (1419)
..||..|..
T Consensus 55 ~~mL~N~QK 63 (161)
T PF14181_consen 55 SGMLNNVQK 63 (161)
T ss_pred HHHHHHHHH
Confidence 356655543
No 67
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=25.80 E-value=1.4e+02 Score=30.60 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCh
Q 000561 368 QGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYM 417 (1419)
Q Consensus 368 ~El~FFdKVKk~L~~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~fLG~~P 417 (1419)
--...|.-.|+.+..+.=++|+.+|..|.++.|+...++.+...++.+++
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~ 103 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYP 103 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCC
Confidence 34456777888888666789999999999999999999999999998886
No 68
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=1.1e+02 Score=38.67 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=4.3
Q ss_pred cccccCC
Q 000561 500 PSYRLLP 506 (1419)
Q Consensus 500 pSYR~LP 506 (1419)
||=+++|
T Consensus 324 ~s~kliP 330 (508)
T KOG3091|consen 324 PSNKLIP 330 (508)
T ss_pred Ccccccc
Confidence 6666665
No 69
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=23.13 E-value=85 Score=35.80 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=11.3
Q ss_pred ChHHHHHHHHHHHHHHhccCChhhHHH
Q 000561 95 QREKYDMFLEVMKDFKAQRTDTAGVIA 121 (1419)
Q Consensus 95 ~p~~Y~~FLeImkdfk~~~id~~~Vi~ 121 (1419)
.|.++.-|-.+=++ .+++|...++..
T Consensus 56 ~~~~~~~f~~vD~d-~sg~i~~~eLq~ 81 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD-RSGRILAKELQQ 81 (221)
T ss_pred cHHHHHHHHhhCcc-ccccccHHHHHH
Confidence 34555555444221 134455555443
No 70
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=22.98 E-value=36 Score=33.11 Aligned_cols=8 Identities=13% Similarity=0.492 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 000561 98 KYDMFLEV 105 (1419)
Q Consensus 98 ~Y~~FLeI 105 (1419)
.|.+.|+.
T Consensus 69 ~~~kli~~ 76 (83)
T PF09579_consen 69 PLDKLIDM 76 (83)
T ss_pred hHHHHHHh
Confidence 44444443
No 71
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=22.81 E-value=79 Score=29.80 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=3.0
Q ss_pred CcccCCc
Q 000561 12 SQFKRPL 18 (1419)
Q Consensus 12 ~q~~~~~ 18 (1419)
-|..+|.
T Consensus 26 qqnqypy 32 (79)
T TIGR03601 26 QQNQYPY 32 (79)
T ss_pred cccCCcc
Confidence 3444444
No 72
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=22.73 E-value=2.5e+02 Score=27.36 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=48.4
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhccc
Q 000561 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFERC 430 (1419)
Q Consensus 370 l~FFdKVKk~L~~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~fLG~~--PDLm~~Fk~FLg~~ 430 (1419)
-.|.++|...|...--+.|..+|+.|.++- +..+||.-+..+|-.. -.|+.+...+|...
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~~ 67 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPPK 67 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCHH
Confidence 358999999999333678999999999999 9999999999999542 26777777777543
No 73
>PLN02705 beta-amylase
Probab=22.59 E-value=68 Score=41.38 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 000561 1186 YARFMTALYN 1195 (1419)
Q Consensus 1186 Y~~fL~~l~~ 1195 (1419)
|..+.+|+.+
T Consensus 559 Y~pIa~mfar 568 (681)
T PLN02705 559 YSPVFETLKK 568 (681)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 74
>TIGR02874 spore_ytfJ sporulation protein YtfJ. Members of this protein family, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if and only if the species is capable of endospore formation. YtfJ was confirmed in spores of Bacillus subtilis; it appears to be expressed in the forespore under control of SigF (see PubMed:12480901).
Probab=22.43 E-value=34 Score=35.86 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcccchhhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCCh
Q 000561 38 GAGGGGGAGGGGGAGAGG-GSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDT 116 (1419)
Q Consensus 38 ~~~g~~~~~~g~~~g~~~-~~~~~~~~~g~ggg~g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~ 116 (1419)
|-|+|||.+.+..+.... .+-+.|||+|+|..-..---|-+.+ +.||..=-++-..|+..|+. +
T Consensus 46 GfgaGg~~~~~~~~~~~~~~~~~fgGG~G~Gv~i~PvA~LVI~~-----~~vrll~v~~~~~~dkiid~----------v 110 (125)
T TIGR02874 46 GFAAGGSEFSSSEGSKKSQQKYPFGGGSGAGVSVKPVAFLVIGS-----DQIRLLPVDQNTLYEKLIDL----------A 110 (125)
T ss_pred eeeeccCccccccccccccccCCCCCccccceEEEEEEEEEEeC-----CeEEEEEcCCCCcHHHHHHH----------h
Q ss_pred hhHHHHHHHHhc
Q 000561 117 AGVIARVKDLFK 128 (1419)
Q Consensus 117 ~~Vi~rV~~LF~ 128 (1419)
|+++++++.+|+
T Consensus 111 P~iv~ki~~~~~ 122 (125)
T TIGR02874 111 PQLLEMIKNLFS 122 (125)
T ss_pred HHHHHHHHHHhh
No 75
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.01 E-value=1.2e+02 Score=36.78 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.7
Q ss_pred cccccccC
Q 000561 3 RIRDDVYG 10 (1419)
Q Consensus 3 ~~~~~~~~ 10 (1419)
|++...|+
T Consensus 250 r~er~r~~ 257 (377)
T KOG1308|consen 250 RVERVRYA 257 (377)
T ss_pred cccccccc
Confidence 34444444
No 76
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.93 E-value=1.6e+02 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000561 372 FCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1419)
Q Consensus 372 FFdKVKk~L~---~~~Y~eFLK~LnLYsqeiI~r~ELv~lV~~fLG~~PDLm~~Fk~FL 427 (1419)
|.+++...++ -..|..|.+-|.-|+.-+.+|..|+..+..+-..|.+|-.=.+.+|
T Consensus 2 yW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 2 YWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666666 6789999999999999999999999999998888988887776654
Done!