Query 000562
Match_columns 1419
No_of_seqs 507 out of 5897
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:46:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000562.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_333-336//hhsearch_pdb/000562hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 645.5 56.8 786 145-1063 428-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 585.0 58.7 783 146-1054 401-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 445.3 37.4 436 149-1056 106-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 439.8 34.0 436 149-1056 36-490 (538)
5 3ux8_A Excinuclease ABC, A sub 1.0 1 1 437.5 38.6 215 147-396 30-297 (670)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 436.5 40.4 427 148-1053 448-981 (986)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 429.8 34.5 202 844-1068 283-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 418.9 33.3 201 843-1068 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 334.3 36.8 197 843-1054 598-897 (916)
10 4f4c_A Multidrug resistance pr 1.0 1 1 324.1 19.1 213 815-1054 414-636 (1321)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=645.50 Aligned_cols=786 Identities=19% Similarity=0.237 Sum_probs=389.1
Q ss_pred CCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCC
Q ss_conf 754013104147673975999986999957999999973949999700199997933899999---83189982677778
Q 000562 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQV 221 (1419)
Q Consensus 145 ~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~ 221 (1419)
+.+.++|+|+|+.++||+.++|+||+|||||||+++|.|.+++. +|+|.+||+++.+... ++.++||+|++| +
T Consensus 428 ~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~-L 503 (1321)
T 4f4c_A 428 RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPA-L 503 (1321)
T ss_dssp STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCC-C
T ss_pred CCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCE-E
T ss_conf 99874333318862288278998058985778888754565164---4861579965011259998504666587533-2
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999997223028887302447978998870899980078999874204650348999999990994323443457
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~ 301 (1419)
.+.||||||.|+.. ...++.+.++|+.- +.. | -+-.|++..||.||+
T Consensus 504 f~~TI~eNI~~g~~----~~~~~~v~~a~~~a---------------------~l~-----~---~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 504 FNCTIEENISLGKE----GITREEMVAACKMA---------------------NAE-----K---FIKTLPNGYNTLVGD 550 (1321)
T ss_dssp CSEEHHHHHHTTCT----TCCHHHHHHHHHHT---------------------TCH-----H---HHHHSTTTTSSEESS
T ss_pred ECCCHHHHHHHHCC----CCHHHHHHHHHHHC---------------------CCH-----H---HHHCCCCCCCCEECC
T ss_conf 07861678864155----22099999999875---------------------654-----6---887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 45788894786799999998079948498669889998999999999999986159959999845914898506919997
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL 381 (1419)
++. .||||||||++||||++.+|++++||||||+||+.+...|.++|+++.+ ++|+|+..|+.+ +...+|+|++|
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCHH--HHHHCCEEEEE
T ss_conf 988-7777787999999987259998998455446887899999999999847--988999736387--89868989996
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH--CCCCCCCCC--CCCCCC---------C--CCCCCHHHHHH
Q ss_conf 29838997283449999881799999999957899983--382000001--369999---------9--87799759999
Q 000562 382 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV--TSKKDQEQY--WSNPYL---------P--YRYISPGKFAE 446 (1419)
Q Consensus 382 ~~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~aDfl~ev--~s~~~~~~~--~~~~~~---------~--~~~~~~~~f~~ 446 (1419)
++|+++.+|+.+++++ ....-++..... ....+.... ...+.. . .......+...
T Consensus 626 ~~G~ive~Gth~eL~~----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1321)
T 4f4c_A 626 KNGQVVEVGDHRALMA----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMN 695 (1321)
T ss_dssp ETTEEEEEECHHHHHT----------TTCHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred ECCEEECCCCHHHHHH----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 3996513689999998----------532799999962212222332334433223211122222342222222110221
Q ss_pred HHHHCHHHHCHHHHHCCCCCCCCCCCCC-------C-CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9984422000488611754455689665-------4-6798777368999999999999973012479999999999999
Q 000562 447 AFHSYHTGKNLSEELAVPFDRRFNHPAA-------L-STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVAL 518 (1419)
Q Consensus 447 ~f~~s~~~~~l~~~l~~~~~~~~~~~~~-------~-~~~~~~~s~~~~~~~~~~R~~ll~~r~~~~~~~~~~~~~i~al 518 (1419)
..+.+..+........ ........... . .......+.+ +-+...+......+...+...+.+.
T Consensus 696 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~i~~~ 766 (1321)
T 4f4c_A 696 RVRSSTIGSITNGPVI-DEKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMSTATIGGF 766 (1321)
T ss_dssp ---------------------CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHHHHHGGG
T ss_pred HHHCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1101321245677402-577753154038999999997078631099--------9999987789999999999999999
Q ss_pred HH--HHHHC----CC-CCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99--88633----55-778754466200567899999999--99789999998811046777210654443547898887
Q 000562 519 IT--MTVFF----RT-TMHHKTIDDGGLYLGALYFSMVII--LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWA 589 (1419)
Q Consensus 519 i~--gtvf~----~~-~~~~~~~~~~~~~~g~lf~~l~~~--~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~l~~~~ 589 (1419)
+. ..+++ .. ..+.........+....|..+... .+..+.......... +..
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~--------------------~~~ 826 (1321)
T 4f4c_A 767 IYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASE--------------------SLT 826 (1321)
T ss_dssp HHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH
T ss_conf 999999999999987517934556678999999999999999999999999999999--------------------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH-----HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
Q ss_conf 873299897889876542111456516----7899999999-----99999999999999860----4357888999999
Q 000562 590 LSIPTSLIESGFWVAVTYYVIGYDPNV----VRFSRQLLLY-----FFLHQMSIGLFRVIGSL----GRNMIVANTFGSF 656 (1419)
Q Consensus 590 ~~iP~~~~~~~i~~~i~Y~~~g~~~~~----~rF~~~~l~~-----~l~~~~~~~lf~~ia~~----~~~~~iA~~~~~~ 656 (1419)
.++-..++..++-.-+.||-.-- ... .||....-.+ .........++.+++.+ .-+...+ +..+
T Consensus 827 ~~lr~~l~~~il~~~~~ffd~~~-~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~--lv~l 903 (1321)
T 4f4c_A 827 RDLRNKLFRNVLSQHIGFFDSPQ-NASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA--LLII 903 (1321)
T ss_dssp HHHHHHHHHHHHTSCSSSTTSGG-GCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCCHHHCCCC-CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH--HHHH
T ss_conf 99999998887349933321678-88488885025059999999999999999986537777022137868999--9999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHC-HHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC----
Q ss_conf 99999987622015898522578878564-999999999----986415984543489988650688862159787----
Q 000562 657 AMLVVMALGGFIISRDSIPKWWIWGFWVS-PLMYAQNAA----SVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFP---- 727 (1419)
Q Consensus 657 ~~l~~~l~~Gf~i~~~~ip~~~~w~~~is-p~~ya~~al----~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~---- 727 (1419)
.+++++.+..++..+..........--.+ ...+..+.+ .+..|... ...-+.+.+......
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e----------~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 904 AILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE----------DTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHHH
T ss_conf 988899999999999999999999999888988999999627988861414----------8899999999999999999
Q ss_pred -CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------------------CCCCCCCH-HHHHHHHHHHCCCH
Q ss_conf -77304--78999999999999999999998309777--------------------76530021-12236775212840
Q 000562 728 -ESYWY--WIGVGAMLGYTLLFNALFTFFLSYLNPLG--------------------KQQAVVSK-KELQERDRRRKGEN 783 (1419)
Q Consensus 728 -~~~~~--w~~ig~ll~~~i~f~~l~~~~l~~l~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~ 783 (1419)
...+. +..+...+.+ ++..+.+.+......... .-...... .+.... ..
T Consensus 974 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~ 1046 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLY-LLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKA------TF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_conf 999999999999999999-99999998757887537654214789999999987788999999999999999------99
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECC
Q ss_conf 46877775520466666433458754455551137605202463131001235444450562100368748829999757
Q 000562 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1419)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~ 863 (1419)
......+.....+.... ....+.. +...-.+.|+|+++..+. .....+|+|+|+.++|||++||+|+
T Consensus 1047 a~~ri~~~l~~~~~~~~--~~~~~~~-~~~~g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDS--LSLAGEK-KKLYGKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHCCCSSCT--TCCCSBC-CCCCCCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHCCCCCCC--CCCCCCC-CCCCCEEEEEEEEEECCC----------CCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 99989998607665777--6677878-888881899987985799----------9988212451699889899999899
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999467997570998896388899997902770---0112358997258878998339999999866129997859999
Q 000562 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940 (1419)
Q Consensus 864 sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~ 940 (1419)
||||||||+++|.|... +.+|+|.+||.+..+ ..+++.++||+|++.++.. |+||++.|.. .|.+.++
T Consensus 1114 SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd--- 1184 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTM--- 1184 (1321)
T ss_dssp TTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCH---
T ss_pred CCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC-CHHHHHHCCC---CCCCCCH---
T ss_conf 99819999999956863--8997899999986549999998545998789973272-3999974549---9999999---
Q ss_pred HHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999919965-------3377323788888899999999999999629995104099999999999999999999
Q 000562 941 RAFVEEVMELVELTS-------LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1419)
Q Consensus 941 ~~~v~~vl~~l~L~~-------~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~ 1013 (1419)
+.++++++..++.+ --|+.+|..| ..||||||||+||||+|+++|+||+||||||+||+.++..|+++|++
T Consensus 1185 -~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1185 -AQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp -HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -9999999982984999717678999823889-15699999999999999717998999681115789999999999999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 98659989999168777899731749899069799993799986258999
Q 000562 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 1063 (1419)
Q Consensus 1014 l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g~~~~~~~~ 1063 (1419)
. ..|+|+|+++|+++ +...+|+|++|+ +|+++-+|+. +++++
T Consensus 1263 ~-~~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A 1263 A-REGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp T-SSSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECH----HHHHH
T ss_pred H-CCCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCH----HHHHH
T ss_conf 7-39998999606899--999699999998-9899998888----99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=584.95 Aligned_cols=783 Identities=17% Similarity=0.218 Sum_probs=370.3
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCC
Q ss_conf 54013104147673975999986999957999999973949999700199997933899999---831899826777788
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~ 222 (1419)
...++|+|+|+.++||+.++|+||+|||||||+++|+|.+++. +|+|.++|.++.+... ++.++||+|++++++
T Consensus 401 ~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 477 (1284)
T 3g5u_A 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477 (1284)
T ss_dssp TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS
T ss_pred CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC
T ss_conf 9871012545897599889998999997999999980788999---7389999998775799999865489868875377
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972230288873024479789988708999800789998742046503489999999909943234434574
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~ 302 (1419)
. ||+||+.|+..- ...+.+.+.++.. + .+.. +..|++..||.||+.
T Consensus 478 ~-ti~eNi~~g~~~----~~~~~~~~~~~~~---------------------~------~~~~--i~~l~~g~~t~~~~~ 523 (1284)
T 3g5u_A 478 T-TIAENIRYGRED----VTMDEIEKAVKEA---------------------N------AYDF--IMKLPHQFDTLVGER 523 (1284)
T ss_dssp S-CHHHHHHHHCSS----CCHHHHHHHHHHT---------------------T------CHHH--HHHSTTGGGCCCSSS
T ss_pred C-CHHHHHHCCCCC----CCHHHHHHHHHHH---------------------C------CHHH--HHHCCCCCCCCCCCC
T ss_conf 6-699997457989----9999999999982---------------------9------6999--974656334501478
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 57888947867999999980799484986698899989999999999999861599599998459148985069199972
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~ 382 (1419)
+. .||||||||++|||+++.+|++++||||||+||+.+...|.+.++...+ ++|+++ +.|....+.+ +|+|++|+
T Consensus 524 g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~i~~-~d~i~vl~ 598 (1284)
T 3g5u_A 524 GA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIV-IAHRLSTVRN-ADVIAGFD 598 (1284)
T ss_dssp SC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEE-ECSCHHHHTT-CSEEEECS
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHHHC-CCEEEEEE
T ss_conf 78-6599999999999999529998999798777799999999999999739--998999-9407789974-99899998
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCC-C---CCCCCCCCCCCCHHHHHHH-HHHCHHHHCH
Q ss_conf 983899728344999988179999999995789998338200000-1---3699999877997599999-9844220004
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQ-Y---WSNPYLPYRYISPGKFAEA-FHSYHTGKNL 457 (1419)
Q Consensus 383 ~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~-~---~~~~~~~~~~~~~~~f~~~-f~~s~~~~~l 457 (1419)
+|+++++|+.+++.+- .| ...+.........+... . ................... .+........
T Consensus 599 ~G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1284)
T 3g5u_A 599 GGVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSI 668 (1284)
T ss_dssp SSCCCCEECHHHHHHT---TS-------HHHHHHHHTC------------------------------------------
T ss_pred CCEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999997889999867---87-------7999999743002211133333322222344333333332000345433344
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-------HHHHHHHH---HCCC
Q ss_conf 8861175445568966546798777368999999999999973012479999999999-------99999886---3355
Q 000562 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLI-------VALITMTV---FFRT 527 (1419)
Q Consensus 458 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~ll~~r~~~~~~~~~~~~~i-------~ali~gtv---f~~~ 527 (1419)
.... ..+................+.+..++ ..++....+....+..++ ...+.+.+ +...
T Consensus 669 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 669 CGPH--DQDRKLSTKEALDEDVPPASFWRILK--------LNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHH--------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCC--CCCCCCCHHHHHHCCCCCHHHHHHHH--------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5642--23321102455531366258999999--------8451579999999999999999999999999999998556
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77875446620056789999999999789999998811046777210654443547898887873299897889876542
Q 000562 528 TMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTY 607 (1419)
Q Consensus 528 ~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~l~~~~~~iP~~~~~~~i~~~i~Y 607 (1419)
.. .. .......++.+++..+.....+....... .+ .+.-......+-..++..++-..+.|
T Consensus 739 ~~-~~-----~~~~~~~~~~~~~~~l~i~~~~~~~~~~~-~~------------~~~~~~~~~~lr~~l~~~ll~~~~~f 799 (1284)
T 3g5u_A 739 GP-PE-----TQRQNSNLFSLLFLILGIISFITFFLQGF-TF------------GKAGEILTKRLRYMVFKSMLRQDVSW 799 (1284)
T ss_dssp CS-TT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred CC-CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 85-03-----36779999999999999999999999999-99------------99999999999999999998399888
Q ss_pred HHCCCCCCH----HHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 111456516----7899999999---------999999999999998604357888999999999999876220158985
Q 000562 608 YVIGYDPNV----VRFSRQLLLY---------FFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSI 674 (1419)
Q Consensus 608 ~~~g~~~~~----~rF~~~~l~~---------~l~~~~~~~lf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~i 674 (1419)
|-.. .... .|+....-.. ............++..+.-+...+. ..+..++++++.++
T Consensus 800 f~~~-~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~~~~~------- 869 (1284)
T 3g5u_A 800 FDDP-KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIAIAGV------- 869 (1284)
T ss_dssp HHSC-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHHHHHH-------
T ss_pred HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-------
T ss_conf 7578-9988999999999999999999999999999999999999999999699999--99999999999999-------
Q ss_pred CHHHHHHHHHCHH------HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-------CCCHHHHHHHHHH
Q ss_conf 2257887856499------99999999864159845434899886506888621597877-------7304789999999
Q 000562 675 PKWWIWGFWVSPL------MYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPE-------SYWYWIGVGAMLG 741 (1419)
Q Consensus 675 p~~~~w~~~isp~------~ya~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-------~~~~w~~ig~ll~ 741 (1419)
....++... .+........|....-...... .....+.+.+..... ....|.++...+.
T Consensus 870 ----~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1284)
T 3g5u_A 870 ----VEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL----TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT 941 (1284)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----9999999999999999999999999999889999984----65999999999999999999999999999999999
Q ss_pred H---HHHHHHHHHHHHHHCCC--CCCCCCCCCHHHH----HH-HHHHH---CCCH---HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9---99999999999983097--7776530021122----36-77521---2840---4687777552046666643345
Q 000562 742 Y---TLLFNALFTFFLSYLNP--LGKQQAVVSKKEL----QE-RDRRR---KGEN---VVIELREYLQRSSSLNGKYFKQ 805 (1419)
Q Consensus 742 ~---~i~f~~l~~~~l~~l~~--~~~~~~~~~~~~~----~~-~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~ 805 (1419)
. .+.+.+.+++....... ...........-. .. ..... .... ......+.....+.... ...
T Consensus 942 ~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~ 1019 (1284)
T 3g5u_A 942 QAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS--YST 1019 (1284)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSS--CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCC
T ss_conf 999999999999999999990980699999999999999999999999999999999999999999838876666--555
Q ss_pred CCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 87544555511376052024631310012354444505621003687488299997579999467997570998896388
Q 000562 806 KGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885 (1419)
Q Consensus 806 ~~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~ 885 (1419)
.+...+...-.+.++|+++..+.. ....+|+|+|+.++|||++||+|+||||||||+++|+|..+ +.+
T Consensus 1020 ~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~ 1087 (1284)
T 3g5u_A 1020 QGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMA 1087 (1284)
T ss_dssp SCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSE
T ss_pred CCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCC
T ss_conf 665456777857999989977999----------98700203059976998899988999978999999946867--899
Q ss_pred EEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------C
Q ss_conf 899997902770---011235899725887899833999999986612999785999999999999991996-------5
Q 000562 886 GDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------S 955 (1419)
Q Consensus 886 G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~ 955 (1419)
|+|.+||.+... ...++.++||+|++.++ ..||+|++.+....+ ..+.+ .+++.++..++. +
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~ 1159 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPD 1159 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTT
T ss_pred CEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCCC---CCCHH----HHHHHHHHHCCHHHHHHCCC
T ss_conf 77989999800078999970268987787406-666999974668778---99999----99999998395999972704
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 33773237888888999999999999996299951040999999999999999999999865998999916877789973
Q 000562 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035 (1419)
Q Consensus 956 ~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~ 1035 (1419)
-.|+.+|..+ ..||||||||++||++|+.+|+||+|||||||||..+...|++.+++. ..|+|||+++|+++. + ..
T Consensus 1160 gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~ 1235 (1284)
T 3g5u_A 1160 KYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QN 1235 (1284)
T ss_dssp GGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GS
T ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HC
T ss_conf 2456117888-933899999999999997499999986875557999999999999986-799989999558799-9-80
Q ss_pred CCEEEEEECCCEEEEECCC
Q ss_conf 1749899069799993799
Q 000562 1036 FDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1036 fD~illL~~gG~~vy~G~~ 1054 (1419)
+|++++|. +|+++..|+.
T Consensus 1236 ~dri~vl~-~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1236 ADLIVVIQ-NGKVKEHGTH 1253 (1284)
T ss_dssp CSEEEEEE-TBEEEEEECH
T ss_pred CCEEEEEE-CCEEEEECCH
T ss_conf 99899998-9989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=445.28 Aligned_cols=436 Identities=22% Similarity=0.254 Sum_probs=306.5
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 13104147673975999986999957999999973949999700199---------9979338999-----998318998
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI---------TYNGHGFKEF-----VPPRTSAYV 214 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I---------~~nG~~~~~~-----~~~~~~ayv 214 (1419)
.+|+|+| .+++|++++|+|||||||||||++|+|.+.++ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 26777788---999999999722302888730244797899887089998007899987420465034899999999099
Q 000562 215 SQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1419)
Q Consensus 215 ~Q~d~~~~---~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL 291 (1419)
+|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 43234434574578889478679999999807994849866988999899999999999998615995999984591489
Q 000562 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1419)
Q Consensus 292 ~~~~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~ 371 (1419)
++..|..++ .|||||||||+||++|+.+|++++|||||+|||..++.++.+.|+++.. .+ ++++.+.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g-~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EG-KAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-69-9899996485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85069199972983899728344999988179999999995789998338200000136999998779975999999844
Q 000562 372 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSY 451 (1419)
Q Consensus 372 ~~lfD~IilL~~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~f~~s 451 (1419)
..++|+|++|.++...| |.. . .+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~-------------------------------------~---~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF-------------------------------------S---KP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE-------------------------------------C---CC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE-------------------------------------C---CC----------------
T ss_conf 86589999977986445-212-------------------------------------2---41----------------
Q ss_pred HHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 22000488611754455689665467987773689999999999999730124799999999999999988633557787
Q 000562 452 HTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531 (1419)
Q Consensus 452 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~ll~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 531 (1419)
+.. ++. +...+
T Consensus 315 ----------------------------~~~-----------~~~------------------i~~~~------------ 325 (607)
T 3bk7_A 315 ----------------------------KGT-----------RNG------------------INEFL------------ 325 (607)
T ss_dssp ----------------------------EEH-----------HHH------------------HHHHH------------
T ss_pred ----------------------------HHH-----------HHH------------------HHHHH------------
T ss_conf ----------------------------327-----------999------------------99997------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 54466200567899999999997899999988110467772106544435478988878732998978898765421114
Q 000562 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 611 (1419)
Q Consensus 532 ~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~l~~~~~~iP~~~~~~~i~~~i~Y~~~g 611 (1419)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHH
Q ss_conf 56516789999999999999999999999860435788899999999999987622015898522578878564999999
Q 000562 612 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQ 691 (1419)
Q Consensus 612 ~~~~~~rF~~~~l~~~l~~~~~~~lf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~ 691 (1419)
.|+.
T Consensus 326 -----------------------------------------------------~~~~----------------------- 329 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL----------------------- 329 (607)
T ss_dssp -----------------------------------------------------HTEE-----------------------
T ss_pred -----------------------------------------------------HHCC-----------------------
T ss_conf -----------------------------------------------------5101-----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99998641598454348998865068886215978777304789999999999999999999983097777653002112
Q 000562 692 NAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771 (1419)
Q Consensus 692 ~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~ig~ll~~~i~f~~l~~~~l~~l~~~~~~~~~~~~~~ 771 (1419)
+.... .+..... . ...
T Consensus 330 -----------------~~~~~----------~~~~~~~---------------------------~-~~~--------- 345 (607)
T 3bk7_A 330 -----------------KDENV----------RFRPYEI---------------------------R-FTK--------- 345 (607)
T ss_dssp -----------------TTTTE----------ECCSSCC---------------------------C-CCC---------
T ss_pred -----------------HHHHH----------HCCCCCC---------------------------C-CCC---------
T ss_conf -----------------34554----------3012123---------------------------4-565---------
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEE
Q ss_conf 23677521284046877775520466666433458754455551137605202463131001235444450562100368
Q 000562 772 LQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGA 851 (1419)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~ 851 (1419)
. ... .. ......+.++|++... +. ..|+++++.
T Consensus 346 ---------------~-------~~~-----~~------~~~~~~l~~~~l~~~~-------------~~-~~l~~~~~~ 378 (607)
T 3bk7_A 346 ---------------L-------SER-----VD------VERETLVEYPRLVKDY-------------GS-FKLEVEPGE 378 (607)
T ss_dssp ---------------S-------TTS-----CC------CCCCEEEEECCEEEEC-------------SS-CEEEECCEE
T ss_pred ---------------C-------CCC-----CC------CCCCEEEEEECEEEEE-------------CC-EEEEECCCC
T ss_conf ---------------7-------775-----44------4675289991309874-------------43-489935153
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 74882999975799994679975709988963888999979027700112358997258878998339999999866129
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~ 931 (1419)
+++||++||+||||||||||+++|+|.... .+|+|.+ .+.++|++|+....+.+||+|.+.......
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~- 445 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK- 445 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-
T ss_conf 279989999999998999999999669888--8628999----------027999805766778984999997531258-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99785999999999999991996533773237888888999999999999996299951040999999999999999999
Q 000562 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1419)
Q Consensus 932 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l 1011 (1419)
....+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|
T Consensus 446 ------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 446 ------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp ------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf ------778999999998769933754992-----237999999999999997489989996874478999999999999
Q ss_pred HHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 9998-65998999916877789973174989906-979999379998
Q 000562 1012 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1419)
Q Consensus 1012 r~l~-~~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vy~G~~g~ 1056 (1419)
++++ +.|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+
T Consensus 515 ~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 9999747989999909899-999869999999598306974289899
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=439.77 Aligned_cols=436 Identities=22% Similarity=0.270 Sum_probs=304.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 13104147673975999986999957999999973949999700199---------9979338999-----998318998
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI---------TYNGHGFKEF-----VPPRTSAYV 214 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I---------~~nG~~~~~~-----~~~~~~ayv 214 (1419)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 267777889---99999999722302888730244797899887089998007899987420465034899999999099
Q 000562 215 SQQDWQVAE---MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1419)
Q Consensus 215 ~Q~d~~~~~---lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL 291 (1419)
.|+....+. .|++|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 43234434574578889478679999999807994849866988999899999999999998615995999984591489
Q 000562 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1419)
Q Consensus 292 ~~~~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~ 371 (1419)
++..|..++ .|||||||||.||++|+.+|++|+|||||++||..++.++++.|+++.. .+ ++++.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g-~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EG-KSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-59-8799994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85069199972983899728344999988179999999995789998338200000136999998779975999999844
Q 000562 372 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSY 451 (1419)
Q Consensus 372 ~~lfD~IilL~~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~f~~s 451 (1419)
..++|+|++|.+|...| |. + . .+
T Consensus 222 ~~~~dri~vl~~~~~~~-~~------------------------------------~-~---~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GI------------------------------------F-S---QP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EE------------------------------------E-C---CC----------------
T ss_pred HHHCCEEEEECCCCCCC-CC------------------------------------C-C---CH----------------
T ss_conf 97688999986863244-02------------------------------------2-5---53----------------
Q ss_pred HHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 22000488611754455689665467987773689999999999999730124799999999999999988633557787
Q 000562 452 HTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531 (1419)
Q Consensus 452 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~ll~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 531 (1419)
+. . ++. +.....
T Consensus 245 ----------------------------~~--~---------~~~------------------~~~~~~----------- 256 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNG------------------INEFLR----------- 256 (538)
T ss_dssp ----------------------------EE--H---------HHH------------------HHHHHH-----------
T ss_pred ----------------------------HH--H---------HHH------------------HHHHHH-----------
T ss_conf ----------------------------55--8---------999------------------998764-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 54466200567899999999997899999988110467772106544435478988878732998978898765421114
Q 000562 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 611 (1419)
Q Consensus 532 ~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~l~~~~~~iP~~~~~~~i~~~i~Y~~~g 611 (1419)
+
T Consensus 257 -------------------------------------------------------------------------------~ 257 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------G 257 (538)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHH
Q ss_conf 56516789999999999999999999999860435788899999999999987622015898522578878564999999
Q 000562 612 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQ 691 (1419)
Q Consensus 612 ~~~~~~rF~~~~l~~~l~~~~~~~lf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~ 691 (1419)
+.
T Consensus 258 -------------------------------------------------------~~----------------------- 259 (538)
T 1yqt_A 258 -------------------------------------------------------YL----------------------- 259 (538)
T ss_dssp -------------------------------------------------------EE-----------------------
T ss_pred -------------------------------------------------------CC-----------------------
T ss_conf -------------------------------------------------------23-----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99998641598454348998865068886215978777304789999999999999999999983097777653002112
Q 000562 692 NAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771 (1419)
Q Consensus 692 ~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~ig~ll~~~i~f~~l~~~~l~~l~~~~~~~~~~~~~~ 771 (1419)
.... . ....... .....
T Consensus 260 -----------------~~~~--~--------~~~~~~~----------------------------~~~~~-------- 276 (538)
T 1yqt_A 260 -----------------KDEN--V--------RFRPYEI----------------------------KFTKT-------- 276 (538)
T ss_dssp -----------------TTTT--E--------ECSSSCC----------------------------CCCCS--------
T ss_pred -----------------CHHH--H--------CCCCCCC----------------------------CCCCC--------
T ss_conf -----------------0023--2--------0344455----------------------------54557--------
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEE
Q ss_conf 23677521284046877775520466666433458754455551137605202463131001235444450562100368
Q 000562 772 LQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGA 851 (1419)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~ 851 (1419)
. . . . . +.....+.++|++...+ . ..|+++++.
T Consensus 277 ----------~----~-~-----~--------~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~ 308 (538)
T 1yqt_A 277 ----------G----E-R-----V--------E------IERETLVTYPRLVKDYG-------------S-FRLEVEPGE 308 (538)
T ss_dssp ----------S----G-G-----G--------S------SCCCEEEEECCEEEEET-------------T-EEEEECCEE
T ss_pred ----------C----C-C-----C--------C------CCCCEEEEEEEEEEEEC-------------C-EEEEECCCC
T ss_conf ----------7----6-5-----5--------6------67871899930799989-------------9-899907441
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 74882999975799994679975709988963888999979027700112358997258878998339999999866129
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~ 931 (1419)
+++||++||+|+||||||||+++|+|..+. .+|+|.+ .+.++|++|+....+.+||.|.+........
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~ 376 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL 376 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 289989999889999999999999679989--9718998----------7469998267767888859999986403688
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99785999999999999991996533773237888888999999999999996299951040999999999999999999
Q 000562 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1419)
Q Consensus 932 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l 1011 (1419)
...+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|
T Consensus 377 -------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 377 -------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp -------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -------78999999999749915653994-----448999999999999997289989993980108999999999999
Q ss_pred HHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 9998-65998999916877789973174989906-979999379998
Q 000562 1012 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1419)
Q Consensus 1012 r~l~-~~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vy~G~~g~ 1056 (1419)
++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+
T Consensus 445 ~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 445 RHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 9999867989999939899-999968999999088315740489899
No 5
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=437.53 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=150.7
Q ss_pred CEEEEECCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----EEEEEEECCCC
Q ss_conf 40131041476739759999869999579999---------------------999739499997----00199997933
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHLQ----VSGKITYNGHG 201 (1419)
Q Consensus 147 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~LaG~l~~~~~----v~G~I~~nG~~ 201 (1419)
+.++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999831899826777-------------------7889999999997223028887302447978998870899980
Q 000562 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1419)
Q Consensus 202 ~~~~~~~~~~ayv~Q~d~-------------------~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~ 262 (1419)
.... +++.++|++|... .++.+||+|++.+........ .+....
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-----------~~~~~~----- 172 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-----------KEAQIA----- 172 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH-----------HHHHHH-----
T ss_conf 1025-50000465112566777775311112344433345785999999752036431-----------456778-----
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 07899987420465034899999999099432-34434574578889478679999999807994--8498669889998
Q 000562 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1419)
Q Consensus 263 did~~~~a~~~~~~~~~~~vd~il~~lgL~~~-~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~--vlllDEpTsGLDs 339 (1419)
+. .. .+.... -.+++.+||++. .|..++ .|||||||||.||++|+.+|+ +++|||||+|||.
T Consensus 173 --~~-----~~--~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 173 --RL-----IL--REIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred --HH-----HH--HHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf --88-----89--999999-9899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999986159959999845914898506919997------298389972834499
Q 000562 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 340 ~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL------~~G~ivy~Gp~~~~~ 396 (1419)
.+..++++.|+++.. .+.|+| .+.|....+ ..+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi-~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLI-VVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEE-EECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEE-EEECCHHHH-HHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-499899-995787999-629989994466656698899740899986
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=436.54 Aligned_cols=427 Identities=20% Similarity=0.291 Sum_probs=299.2
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCH
Q ss_conf 01310414767397599998699995799999997394999970019999793389999983189982677-77889999
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d-~~~~~lTV 226 (1419)
..+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+.. .....+|++|+. ...+.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCC---CCEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--797663---541699973564324557809
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999997223028887302447978998870899980078999874204650348999999990994-3234434574578
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1419)
Q Consensus 227 rEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~r 305 (1419)
.|++.+ ... +. ...++.+++.+||+ +..|..++
T Consensus 514 ~e~l~~--~~~--~~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGV--GT-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCS--SC-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHC--CH-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--612--79-------------------------------------99999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 88947867999999980799484986698899989999999999999861599599998459148985069199972983
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 gLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ 385 (1419)
.||||||||+.||++|+.+|++++|||||+|||..+..++.+.|++ .+.| ++.+.|...++.+++|+|++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~t-vIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGIT-SITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSE-EEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCE-EEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986----7998-9999798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHCHHHHHCCC
Q ss_conf 89-97283449999881799999999957899983382000001369999987799759999998442200048861175
Q 000562 386 IV-YQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 464 (1419)
Q Consensus 386 iv-y~Gp~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~f~~s~~~~~l~~~l~~~ 464 (1419)
++ |.|+.+++... .| ....+
T Consensus 623 iv~~~G~~~e~~~~-------~~----------------~~~~~------------------------------------ 643 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CP----------------AAKAY------------------------------------ 643 (986)
T ss_dssp EEEEESCHHHHHHH-------CG----------------GGGGS------------------------------------
T ss_pred EECCCCCHHHHHHH-------HH----------------HHHHH------------------------------------
T ss_conf 42677999999861-------48----------------89999------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 44556896654679877736899999999999997301247999999999999999886335577875446620056789
Q 000562 465 FDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544 (1419)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~ll~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~l 544 (1419)
+... ....
T Consensus 644 ------------------------------------------------------------~~l~--~~~~---------- 651 (986)
T 2iw3_A 644 ------------------------------------------------------------EELS--NTDL---------- 651 (986)
T ss_dssp ------------------------------------------------------------SSTT--TCCC----------
T ss_pred ------------------------------------------------------------HHHH--HHHH----------
T ss_conf ------------------------------------------------------------8644--5443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999978999999881104677721065444354789888787329989788987654211145651678999999
Q 000562 545 YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLL 624 (1419)
Q Consensus 545 f~~l~~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~l~~~~~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rF~~~~l 624 (1419)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998604357888999999999999876220158985225788785649999999999864159845
Q 000562 625 LYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 704 (1419)
Q Consensus 625 ~~~l~~~~~~~lf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~ 704 (1419)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 43489988650688862159787773047899999999999999999999830977776530021122367752128404
Q 000562 705 DKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784 (1419)
Q Consensus 705 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~ig~ll~~~i~f~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1419)
. .+.. +..
T Consensus 654 ~--~p~~------------~~~---------------------------------------------------------- 661 (986)
T 2iw3_A 654 K--FPEP------------GYL---------------------------------------------------------- 661 (986)
T ss_dssp C--CCCC------------CCC----------------------------------------------------------
T ss_pred C--CCCC------------CCC----------------------------------------------------------
T ss_conf 3--5655------------543----------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCC
Q ss_conf 68777755204666664334587544555511376052024631310012354444505621003687488299997579
Q 000562 785 VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVS 864 (1419)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~s 864 (1419)
.. .... ....+..+|+++..+ ...+.+|+|+|+.+++|++++|+|+|
T Consensus 662 ----------~~------~~~~------~~~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpN 708 (986)
T 2iw3_A 662 ----------EG------VKTK------QKAIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPN 708 (986)
T ss_dssp ----------TT------CCST------TSEEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCC
T ss_pred ----------CC------CCCC------CCCEEEEEEEEEEEC-----------CCCCEEEECCEEEECCCCEEEEECCC
T ss_conf ----------34------5667------870699984699818-----------98741343227998289789998999
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHH-----------
Q ss_conf 9994679975709988963888999979027700112358997258878----9983399999998661-----------
Q 000562 865 GAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH----SPGLTVLESLLFSAWL----------- 929 (1419)
Q Consensus 865 GaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~----~~~lTv~E~L~f~a~l----------- 929 (1419)
|||||||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|++|.+.+.-..
T Consensus 709 GSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~ 778 (986)
T 2iw3_A 709 GAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRAN 778 (986)
T ss_dssp CHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTS
T ss_pred CCCHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9879999999957988--88608998686--------4257631302433210011479999887750450255554332
Q ss_pred -CCC------------------------------------------------------CC------CCH-----------
Q ss_conf -299------------------------------------------------------97------859-----------
Q 000562 930 -RLP------------------------------------------------------SE------IEL----------- 937 (1419)
Q Consensus 930 -r~~------------------------------------------------------~~------~~~----------- 937 (1419)
... .. .+.
T Consensus 779 ~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v 858 (986)
T 2iw3_A 779 RQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMV 858 (986)
T ss_dssp CCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 10343555442000112320123444455543122200210002554320000012343234432101677766676655
Q ss_pred ---------------HHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf ---------------999999999999919965-3-37732378888889999999999999962999510409999999
Q 000562 938 ---------------ETQRAFVEEVMELVELTS-L-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 938 ---------------~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD 1000 (1419)
....+.++++++.++|.+ . .+..+ +.||||||||+.||++|+.+|++|+|||||+|||
T Consensus 859 ~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD 933 (986)
T 2iw3_A 859 AEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933 (986)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 44324555430223234799999999976998054448980-----4239999999999999983999999979865779
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 99999999999999865998999916877789973174989906979999379
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1419)
Q Consensus 1001 ~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~ 1053 (1419)
..+...+++.|+++ +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 934 ~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 934 RDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 99999999999974---997999979899-99985899999989-99998687
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=429.81 Aligned_cols=202 Identities=23% Similarity=0.251 Sum_probs=160.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 62100368748829999757999946799757099889638889999790277001123589972588789983399999
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1419)
Q Consensus 844 iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~L 923 (1419)
.|+.+++.+++||+++|+|+||||||||+++|+|... +.+|+|.++|. .++|++|+.......||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE---------EEEEECHHCCCCCCCCHHHHH
T ss_conf 9982664688998999999999989999999957888--99818999984---------567614000345477799999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
Q ss_conf 99866129997859999999999999919965337732378888889999999999999962999510409999999999
Q 000562 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1419)
Q Consensus 924 ~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~ 1003 (1419)
.+........ ....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+
T Consensus 352 ~~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALST------SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTCT------TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHCCCH------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 8755311211------6999999998759977862893-----2279999999999999970899899969865799999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999999999986-59989999168777899731749899069-79999379998625899999864
Q 000562 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEAV 1068 (1419)
Q Consensus 1004 a~~i~~~lr~l~~-~g~tvi~tiHqps~~i~~~fD~illL~~g-G~~vy~G~~g~~~~~~~~yF~~~ 1068 (1419)
...+++.|+++++ .|.|||+++|+.. ++...+|++++|..+ |.....|+...-...+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=418.93 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=155.9
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 5621003687488-----29999757999946799757099889638889999790277001123589972588789983
Q 000562 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 843 ~iL~~vs~~~~pG-----~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~l 917 (1419)
..++++++.+++| |+++|+|+||||||||+++|+|.... .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------C----CCCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------6----677379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 39999999866129997859999999999999919965337732378888889999999999999962999510409999
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTs 997 (1419)
||+|.+... .+.. .. ....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHCC--CC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--5303--24---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999998-65998999916877789973174989906-979999379998625899999864
Q 000562 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAV 1068 (1419)
Q Consensus 998 GLD~~~a~~i~~~lr~l~-~~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1068 (1419)
|||..+...+++.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+--.....+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=334.35 Aligned_cols=197 Identities=27% Similarity=0.415 Sum_probs=144.6
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC--CC--EEE------EEEEECCCCCCCCC----
Q ss_conf 562100368748829999757999946799---------75709988--96--388------89999790277001----
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--GG--IIE------GDIYISGYPKRQET---- 899 (1419)
Q Consensus 843 ~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl---------~~Lag~~~--~~--~~~------G~i~i~G~~~~~~~---- 899 (1419)
..|+|+|+.+++|++++|+|+||||||||+ +.+.+... ++ .+. +-+.+++.|.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------1235899725887899------------------------
Q 000562 900 ----------------------------------------FARISGYCEQNDIHSP------------------------ 915 (1419)
Q Consensus 900 ----------------------------------------~~~~~gyv~Q~d~~~~------------------------ 915 (1419)
..+..||+.|+..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------833999999986612999785999999999999991996533773237888888999999999999996299
Q 000562 916 --------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1419)
Q Consensus 916 --------~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p 987 (1419)
.+||.|++.|.... .....+.++++.++|.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf ---95104099999999999999999999986599899991687778997317498990-----69799993799
Q 000562 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1419)
Q Consensus 988 ---~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~-----~gG~~vy~G~~ 1054 (1419)
++++|||||+|||..+...+++.|+++++.|.|||++.|++ +....+|++++|. +||+++..|++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88978999798889999999999999999996699899993799--99972999999668777789789997699
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=324.12 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=176.7
Q ss_pred CEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 11376052024631310012354444505621003687488299997579999467997570998896388899997902
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1419)
Q Consensus 815 ~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~ 894 (1419)
-.+.++|+++..+.. +...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCCC
T ss_conf 767999855407999----------98743333188622882789980589857788887545651--644861579965
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 770---01123589972588789983399999998661299978599999999999999199-------65337732378
Q 000562 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-------TSLSGALIGLP 964 (1419)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~ 964 (1419)
..+ ..+++.++||+|++.++.. |++|++.|.. ++.+. +.++++.+..++ .+-.++.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CHHCCHHHHHHCCCCCCCCCEEECC-CHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 0112599985046665875332078-6167886415-----52209----999999987565468870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 88888999999999999996299951040999999999999999999999865998999916877789973174989906
Q 000562 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1419)
Q Consensus 965 ~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~ 1044 (1419)
|. .||||||||++|||+++++|+|++||||||+||+.++..|++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~- 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK- 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE-
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE-
T ss_conf 88-777778799999998725999899845544688789999999999984-7988999736387--898689899963-
Q ss_pred CCEEEEECCC
Q ss_conf 9799993799
Q 000562 1045 GGELIYAGPL 1054 (1419)
Q Consensus 1045 gG~~vy~G~~ 1054 (1419)
+|+++..|+.
T Consensus 627 ~G~ive~Gth 636 (1321)
T 4f4c_A 627 NGQVVEVGDH 636 (1321)
T ss_dssp TTEEEEEECH
T ss_pred CCEEECCCCH
T ss_conf 9965136899
Done!