Query 000563
Match_columns 1419
No_of_seqs 355 out of 675
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 16:07:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000563.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_337-341//hhsearch_scop/000563hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.8 3.3E-20 2.4E-24 154.6 6.1 74 73-146 2-85 (85)
2 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.8 2.5E-19 1.8E-23 148.5 6.8 74 71-144 3-89 (89)
3 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.7 3.8E-17 2.8E-21 133.3 8.0 72 157-228 5-89 (89)
4 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.7 5.4E-17 3.9E-21 132.3 8.3 73 157-229 2-84 (85)
5 d1wlma1 a.39.1.11 (A:8-145) Pr 15.7 17 0.0012 10.6 2.5 43 371-413 57-103 (138)
6 d1seda_ a.219.1.1 (A:) Hypothe 11.1 25 0.0018 9.5 0.9 60 369-428 45-109 (112)
7 d1vf6c_ a.194.1.1 (C:) Maguk p 5.6 61 0.0044 6.8 3.2 30 1223-1253 4-33 (51)
8 d3er7a1 d.17.4.24 (A:5-122) Un 5.3 65 0.0048 6.5 0.9 12 753-764 43-54 (118)
9 d1rw2a_ a.118.19.1 (A:) C-term 3.5 1.1E+02 0.0078 5.0 3.9 38 72-109 68-107 (152)
10 d1bgva2 c.58.1.1 (A:1-194) Glu 3.5 1.1E+02 0.0079 5.0 5.5 47 163-223 2-53 (194)
No 1
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.79 E-value=3.3e-20 Score=154.62 Aligned_cols=74 Identities=31% Similarity=0.673 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 7764320345258999986303847799999999998840499165----------999999984049125633100588
Q 000563 73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAG----------VIARVKDLFKGHNNLIFGFNTFLP 142 (1419)
Q Consensus 73 ~~~~~~~dAl~YL~~VK~~F~d~p~vY~~FLeImkdfk~~~idt~g----------Vi~rV~~LF~ghpdLI~GFN~FLP 142 (1419)
...+.+++|++||++||.+|+++|++|++||+||++|+.++||+++ |+.+|+.||+||||||.|||+|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCCC
Q ss_conf 6444
Q 000563 143 KGYE 146 (1419)
Q Consensus 143 ~gy~ 146 (1419)
.||+
T Consensus 82 ~~~~ 85 (85)
T d2f05a1 82 EAKR 85 (85)
T ss_dssp GGGC
T ss_pred CCCC
T ss_conf 6559
No 2
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.77 E-value=2.5e-19 Score=148.54 Aligned_cols=74 Identities=30% Similarity=0.593 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 887764320345258999986303847799999999998840-------------4991659999999840491256331
Q 000563 71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQ-------------RTDTAGVIARVKDLFKGHNNLIFGF 137 (1419)
Q Consensus 71 g~~~~~~~~dAl~YL~~VK~~F~d~p~vY~~FLeImkdfk~~-------------~idt~gVi~rV~~LF~ghpdLI~GF 137 (1419)
...+++++++|++||++||.+|+++|++|++||+||++|+.+ ++++++|++||++||+||||||.||
T Consensus 3 ~~~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~F 82 (89)
T d1s5qb_ 3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF 82 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 44699759999999999999981585999999999999997300111001212234669999999999985487999989
Q ss_pred HCCCCCC
Q ss_conf 0058864
Q 000563 138 NTFLPKG 144 (1419)
Q Consensus 138 N~FLP~g 144 (1419)
|+|||..
T Consensus 83 n~FLPes 89 (89)
T d1s5qb_ 83 GQFLPDA 89 (89)
T ss_dssp HHHSCCC
T ss_pred HHHCCCC
T ss_conf 9668799
No 3
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.68 E-value=3.8e-17 Score=133.34 Aligned_cols=72 Identities=53% Similarity=0.949 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 875117999999999998717896889999999999862167-------------4887999999841039369999702
Q 000563 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK-------------DINEVYSEVASLFEDHADLLEEFTR 223 (1419)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~-------------si~eV~~~Va~LF~~hPDLL~eF~~ 223 (1419)
.+|++|++|++||++||.||+++|++|++||+||++|+++.+ +..+|+++|+.||+||||||.+|+.
T Consensus 5 ~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~Fn~ 84 (89)
T d1s5qb_ 5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQ 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 69975999999999999998158599999999999999730011100121223466999999999998548799998996
Q ss_pred HCCCC
Q ss_conf 08999
Q 000563 224 FLPDT 228 (1419)
Q Consensus 224 FLP~~ 228 (1419)
|||++
T Consensus 85 FLPes 89 (89)
T d1s5qb_ 85 FLPDA 89 (89)
T ss_dssp HSCCC
T ss_pred HCCCC
T ss_conf 68799
No 4
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.68 E-value=5.4e-17 Score=132.28 Aligned_cols=73 Identities=51% Similarity=0.899 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 87511799999999999871789688999999999986216----------74887999999841039369999702089
Q 000563 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1419)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~----------~si~eV~~~Va~LF~~hPDLL~eF~~FLP 226 (1419)
+++++|++|++||++||.||+++|++|++||+||++|+++. .++.+|+.+|+.||++|||||.+|+.|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCC
Q ss_conf 997
Q 000563 227 DTS 229 (1419)
Q Consensus 227 ~~~ 229 (1419)
+++
T Consensus 82 ~~~ 84 (85)
T d2f05a1 82 EAK 84 (85)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 655
No 5
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.74 E-value=17 Score=10.59 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHH
Q ss_conf 68999985219-588999999997663178---89989999999984
Q 000563 371 IFCDKVKEKLC-SDDYQAFLKCLHIYSNGI---IKRNDLQNLVTDLL 413 (1419)
Q Consensus 371 ~FFdKVKk~L~-~~~Y~eFLK~LnLysqei---Isr~ELv~lV~~fL 413 (1419)
..|-|||..-. .-+|.+|+++|..-.+.. ++..|.++.+..++
T Consensus 57 iiF~k~k~k~~r~i~f~~F~~aL~~iA~kk~~~~s~~e~~~~i~~~i 103 (138)
T d1wlma1 57 IVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLI 103 (138)
T ss_dssp HHHHHHSCSSCSEEEHHHHHHHHHHTHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88987404778626799999999999998547844889999999999
No 6
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=11.12 E-value=25 Score=9.48 Aligned_cols=60 Identities=23% Similarity=0.514 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHC
Q ss_conf 4368999985219---58899999999766317889989999999984--008578999866302
Q 000563 369 GFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1419)
Q Consensus 369 el~FFdKVKk~L~---~~~Y~eFLK~LnLysqeiIsr~ELv~lV~~fL--G~~PdLm~~Fk~FLg 428 (1419)
=+.+|+++.+-+. .+-|--|=.+|..|..-+.-+=++-.-+..++ |-+++||.+|+..+.
T Consensus 45 ~~~lCeeL~~q~~~QKaeGfv~F~~Ll~~Fag~L~~~L~v~eti~Al~~QgLf~pLM~ef~~~ik 109 (112)
T d1seda_ 45 VMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELMEVFIDIMK 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHSCTTSCHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999987452139999999975356558999999999985672899999999987
No 7
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.62 E-value=61 Score=6.76 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=21.3
Q ss_pred EHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 0999999999999998411113899999999
Q 000563 1223 TLDKLLYRLCKQLQTVAADEMDNKLIQLYEY 1253 (1419)
Q Consensus 1223 TiDKLI~~lvKQlq~i~sDe~~~~ll~L~~~ 1253 (1419)
-|..|+.+ .||+||+..|.-+|+=+.|...
T Consensus 4 e~edl~~s-lK~iqh~LvDsQSQeDi~l~lq 33 (51)
T d1vf6c_ 4 DVEDLFSS-LKHIQHTLVDSQSQEDISLLLQ 33 (51)
T ss_dssp HHHHHHHH-HHHHHTTCCSHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 19999999-9999876056100777999999
No 8
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=5.31 E-value=65 Score=6.54 Aligned_cols=12 Identities=0% Similarity=0.052 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999961
Q 000563 753 LNKAMKLWTTFL 764 (1419)
Q Consensus 753 ~~ki~~~~~~Fi 764 (1419)
+++|..|++.|+
T Consensus 43 ~~ai~sFf~~FF 54 (118)
T d3er7a1 43 IDAWKQFVRMVF 54 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 289999999998
No 9
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=1.1e+02 Score=5.03 Aligned_cols=38 Identities=8% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHH
Q ss_conf 877643203452589999863--03847799999999998
Q 000563 72 TSQKLTTSDALTYLKEVKDMF--QDQREKYDMFLEVMKDF 109 (1419)
Q Consensus 72 ~~~~~~~~dAl~YL~~VK~~F--~d~p~vY~~FLeImkdf 109 (1419)
+.......-|+.-|...+..+ .+.|..||.||.-|++.
T Consensus 68 s~~~~~y~Ka~ecL~~lRe~ci~~~ep~~yN~FL~~LK~~ 107 (152)
T d1rw2a_ 68 TNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEK 107 (152)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0463129999999999999998628888999999999999
No 10
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=3.53 E-value=1.1e+02 Score=5.00 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH-----HHHHHHH
Q ss_conf 999999999998717896889999999999862167488799999984103936-----9999702
Q 000563 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHAD-----LLEEFTR 223 (1419)
Q Consensus 163 ~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hPD-----LL~eF~~ 223 (1419)
+..-+|++.|+.|+.++|+ |+...+ +|...+..+|..||+ +++-+..
T Consensus 2 ~~~~~~~~~v~~rnp~Epe----F~QaV~----------Ev~~sl~~~i~~~p~y~~~~i~e~l~~ 53 (194)
T d1bgva2 2 KYVDRVIAEVEKKYADEPE----FVQTVE----------EVLSSLGPVVDAHPEYEEVALLERMVI 53 (194)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHHHH----------HHHHTTHHHHHTCHHHHHTTHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCCHH----HHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHCC
T ss_conf 3599999999961889819----999999----------999988999976977778889988707
Done!