BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000565
(1418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 515
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 516 TTKHMLPTVL 525
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 515
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 516 TTKHMLPTVL 525
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 402 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 461
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 462 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 516
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 517 TTKHMLPTVL 526
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 402 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 461
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 462 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 516
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 517 TTKHMLPTVL 526
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 393 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 452
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 453 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 507
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 508 TTKHMLPTVL 517
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS--YAW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 395 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 454
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 455 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 509
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 510 TTKHMLPTVL 519
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSY--AW-THRSWRVREE 137
+L+PA+VE DAK VR A + L E+ S AW + +RE
Sbjct: 45 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 104
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L M DPN R + CI + G +D
Sbjct: 105 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI 159
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 160 TTKHMLPTVL 169
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 1211 QLIKASVANDHSIWTKY---FNQILTAVLEVLDDADSSVREVALS--LINEMLKNQKD-- 1263
+ I+ +V DH I+TKY N I T V E+L+ + R V + L N + +++D
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 1264 -VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1299
V +DS + + +D +P++S++ LT V+
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVV 102
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 1211 QLIKASVANDHSIWTKY---FNQILTAVLEVLDDADSSVREVALS--LINEMLKNQKD-- 1263
+ I+ +V DH I+TKY N I T V E+L+ + R V + L N + +++D
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 1264 -VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1299
V +DS + + +D +P++S++ LT V+
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVV 102
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 1231 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 1285
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 1286 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1345
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVN--QFIISR--TQALMLH 212
Query: 1346 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1396
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 848 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 901
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 408 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 467
Query: 902 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 956
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 468 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 523
Query: 957 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 1016
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 524 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 583
Query: 1017 TPRIE 1021
P +E
Sbjct: 584 FPLLE 588
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSS 1245
+P++ L+ + + + GALQ++ + S D + + N ++ L+ +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 1246 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS----Q 1301
+R A++ +N+ + ++ + ++ IE L + D P+V L ++L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 1302 YDPFRCLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1358
P V L T+D+ L C LT + ++ L+ LP +P L
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309
Query: 1359 NQSADV 1364
D+
Sbjct: 310 YSDIDI 315
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 1231 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 1285
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 1286 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1345
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVN--QFIISR--TQALMLH 212
Query: 1346 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1396
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 848 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 901
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429
Query: 902 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 956
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 485
Query: 957 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 1016
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 545
Query: 1017 TPRIE 1021
P +E
Sbjct: 546 FPLLE 550
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSS 1245
+P++ L+ + + + GALQ++ + S D + + N ++ L+ +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 1246 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL----SQ 1301
+R A++ +N+ + ++ + ++ IE L + D P+V L ++L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 1302 YDPFRCLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1358
P V L T+D+ L C LT + ++ L+ LP +P L
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309
Query: 1359 NQSADV 1364
D+
Sbjct: 310 YSDIDI 315
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 1231 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 1285
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 1286 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1345
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVN--QFIISR--TQALMLH 212
Query: 1346 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1396
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 848 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 901
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 383 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 442
Query: 902 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 956
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 443 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 498
Query: 957 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 1016
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 499 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 558
Query: 1017 TPRIE 1021
P +E
Sbjct: 559 FPLLE 563
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 807 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC 866
AR S ++ + P+ I +++N + F + L+DP V + AL T +
Sbjct: 1004 ARSSVVTAVKFTISDHPQPIDPLLKN---CIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1060
Query: 867 RKPFESYMERILPHVFSRLIDPKELVRQ 894
++ +LPH+++ KEL+R+
Sbjct: 1061 PSLIRDLLDTVLPHLYNETKVRKELIRE 1088
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 807 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC 866
AR S ++ + P+ I +++N + F + L+DP V + AL T +
Sbjct: 981 ARSSVVTAVKFTISDHPQPIDPLLKN---CIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037
Query: 867 RKPFESYMERILPHVFSRLIDPKELVRQ 894
++ +LPH+++ KEL+R+
Sbjct: 1038 PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSY--AW-THRSWRVREE 137
+L+PA+VE DAK VR A L E+ S AW + +RE
Sbjct: 395 QSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREA 454
Query: 138 FARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197
+ + F I+P +L DPN R + CI + G +D
Sbjct: 455 ATSNLKKLVEKFGKE--WAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCG---QDI 509
Query: 198 LHRHNLPNSM 207
+H LP +
Sbjct: 510 TTKHXLPTVL 519
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,319,738
Number of Sequences: 62578
Number of extensions: 1470919
Number of successful extensions: 4023
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3954
Number of HSP's gapped (non-prelim): 82
length of query: 1418
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1307
effective length of database: 8,027,179
effective search space: 10491522953
effective search space used: 10491522953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)