Query 000565
Match_columns 1418
No_of_seqs 366 out of 1426
Neff 7.9
Searched_HMMs 46136
Date Mon Apr 1 19:31:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2956 CLIP-associating prote 100.0 3.4E-47 7.5E-52 428.4 35.1 506 808-1415 2-516 (516)
2 PF12348 CLASP_N: CLASP N term 100.0 6.5E-28 1.4E-32 270.5 20.3 217 283-500 2-228 (228)
3 KOG1820 Microtubule-associated 99.9 2.3E-24 5.1E-29 269.5 45.1 697 76-999 57-774 (815)
4 KOG1820 Microtubule-associated 99.8 1.4E-17 2.9E-22 209.2 31.0 488 2-503 256-788 (815)
5 PF12348 CLASP_N: CLASP N term 99.8 3.5E-18 7.6E-23 191.8 16.4 199 1201-1399 20-228 (228)
6 KOG1824 TATA-binding protein-i 99.7 8.8E-11 1.9E-15 143.0 68.1 421 3-464 9-491 (1233)
7 KOG2171 Karyopherin (importin) 99.7 1.1E-10 2.4E-15 147.2 70.7 432 12-490 93-606 (1075)
8 KOG1824 TATA-binding protein-i 99.6 5.5E-09 1.2E-13 127.8 68.9 176 1227-1405 1004-1219(1233)
9 KOG2171 Karyopherin (importin) 99.6 1.1E-11 2.3E-16 156.2 41.4 195 1-196 350-558 (1075)
10 KOG1242 Protein containing ada 99.6 5E-14 1.1E-18 167.6 17.4 199 1187-1390 135-338 (569)
11 KOG2023 Nuclear transport rece 99.4 1.6E-10 3.5E-15 136.4 26.4 346 81-488 127-515 (885)
12 KOG2023 Nuclear transport rece 99.3 7.1E-08 1.5E-12 114.6 45.2 725 3-1009 94-879 (885)
13 KOG1242 Protein containing ada 99.3 1.1E-09 2.5E-14 131.0 29.7 398 2-502 137-547 (569)
14 KOG0211 Protein phosphatase 2A 99.3 3.9E-09 8.5E-14 132.9 34.9 392 49-480 245-666 (759)
15 PLN03200 cellulose synthase-in 99.2 6.4E-06 1.4E-10 113.0 64.0 187 1187-1376 653-859 (2102)
16 KOG2933 Uncharacterized conser 99.2 1.5E-10 3.2E-15 127.3 16.0 181 295-479 98-278 (334)
17 KOG1241 Karyopherin (importin) 99.1 6.7E-08 1.4E-12 116.9 33.2 419 4-462 222-693 (859)
18 KOG0212 Uncharacterized conser 99.1 1.9E-07 4.1E-12 109.6 31.6 380 3-477 4-405 (675)
19 KOG0213 Splicing factor 3b, su 99.0 0.00024 5.3E-09 86.0 55.7 368 4-440 368-750 (1172)
20 KOG1241 Karyopherin (importin) 99.0 2.1E-06 4.6E-11 104.3 37.4 449 11-501 338-833 (859)
21 PTZ00429 beta-adaptin; Provisi 98.9 8.8E-06 1.9E-10 104.4 42.3 394 3-483 72-512 (746)
22 KOG0915 Uncharacterized conser 98.9 1.2E-05 2.7E-10 104.0 39.3 385 801-1360 967-1368(1702)
23 PF01602 Adaptin_N: Adaptin N 98.8 1.2E-06 2.7E-11 111.2 30.8 170 295-482 314-487 (526)
24 PRK13800 putative oxidoreducta 98.8 8.6E-07 1.9E-11 118.5 29.1 271 45-474 625-895 (897)
25 PTZ00429 beta-adaptin; Provisi 98.8 1.3E-05 2.8E-10 102.9 37.1 151 328-489 255-408 (746)
26 KOG2956 CLIP-associating prote 98.8 1.5E-05 3.3E-10 92.7 33.5 210 287-504 289-504 (516)
27 KOG0212 Uncharacterized conser 98.8 5.9E-06 1.3E-10 97.4 29.5 392 10-436 54-481 (675)
28 PF01602 Adaptin_N: Adaptin N 98.7 7.3E-06 1.6E-10 104.1 32.2 400 4-486 9-414 (526)
29 COG5215 KAP95 Karyopherin (imp 98.6 6.3E-05 1.4E-09 88.7 32.9 325 10-414 339-689 (858)
30 PRK09687 putative lyase; Provi 98.6 7.3E-06 1.6E-10 94.3 24.3 259 77-474 18-278 (280)
31 PRK13800 putative oxidoreducta 98.6 5E-06 1.1E-10 111.3 26.5 148 2-188 624-771 (897)
32 KOG2933 Uncharacterized conser 98.6 1.2E-06 2.7E-11 96.9 16.4 182 3-186 92-275 (334)
33 KOG1248 Uncharacterized conser 98.6 0.0096 2.1E-07 77.1 65.0 160 1240-1404 748-922 (1176)
34 PLN03200 cellulose synthase-in 98.6 6.1E-05 1.3E-09 103.8 35.4 397 2-490 449-872 (2102)
35 COG5181 HSH155 U2 snRNP splice 98.6 2.4E-05 5.1E-10 92.7 27.1 173 296-479 699-871 (975)
36 COG5181 HSH155 U2 snRNP splice 98.6 0.0023 5.1E-08 76.4 43.0 181 6-199 175-357 (975)
37 PRK09687 putative lyase; Provi 98.6 5.4E-06 1.2E-10 95.4 21.5 159 1-186 25-186 (280)
38 KOG0213 Splicing factor 3b, su 98.5 0.00031 6.7E-09 85.1 35.8 406 3-477 720-1141(1172)
39 KOG0915 Uncharacterized conser 98.4 0.00017 3.7E-09 93.9 30.8 380 11-460 969-1367(1702)
40 COG5215 KAP95 Karyopherin (imp 98.4 0.0012 2.5E-08 78.4 34.2 433 5-486 227-712 (858)
41 KOG0211 Protein phosphatase 2A 98.2 0.00014 3.1E-09 92.5 24.7 364 3-433 280-662 (759)
42 KOG0166 Karyopherin (importin) 98.2 0.00047 1E-08 83.3 26.7 390 2-483 69-488 (514)
43 PF10508 Proteasom_PSMB: Prote 98.1 0.01 2.2E-07 74.5 38.1 374 39-502 75-483 (503)
44 KOG1060 Vesicle coat complex A 98.1 0.01 2.3E-07 73.3 35.7 436 2-475 38-530 (968)
45 PF10508 Proteasom_PSMB: Prote 98.1 0.0053 1.2E-07 77.1 34.5 377 3-479 7-421 (503)
46 KOG1248 Uncharacterized conser 97.9 0.2 4.4E-06 65.4 43.8 201 288-492 657-913 (1176)
47 PF12460 MMS19_C: RNAPII trans 97.8 0.00069 1.5E-08 83.1 19.5 203 1186-1395 190-412 (415)
48 KOG1060 Vesicle coat complex A 97.7 0.034 7.3E-07 69.1 31.3 250 46-360 40-318 (968)
49 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00025 5.5E-09 67.7 10.8 93 1204-1297 2-94 (97)
50 KOG0166 Karyopherin (importin) 97.7 0.004 8.7E-08 75.5 22.1 303 84-474 68-389 (514)
51 PF05004 IFRD: Interferon-rela 97.6 0.01 2.3E-07 69.4 24.6 192 1187-1381 45-261 (309)
52 KOG1062 Vesicle coat complex A 97.5 0.045 9.7E-07 68.4 28.6 439 3-500 74-574 (866)
53 KOG1240 Protein kinase contain 97.5 0.0094 2E-07 76.8 23.4 295 13-414 437-744 (1431)
54 KOG1061 Vesicle coat complex A 97.5 0.0084 1.8E-07 74.7 22.5 347 5-467 127-478 (734)
55 KOG0168 Putative ubiquitin fus 97.5 0.081 1.8E-06 66.3 29.5 207 1-215 169-389 (1051)
56 PF10274 ParcG: Parkin co-regu 97.5 0.00042 9.2E-09 73.1 9.0 101 1300-1404 32-135 (183)
57 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.0014 2.9E-08 62.7 11.5 93 15-109 2-94 (97)
58 PF05004 IFRD: Interferon-rela 97.5 0.011 2.5E-07 69.1 21.6 203 280-486 39-265 (309)
59 KOG0413 Uncharacterized conser 97.3 0.53 1.2E-05 59.8 33.9 179 4-187 477-684 (1529)
60 COG5064 SRP1 Karyopherin (impo 97.1 0.075 1.6E-06 60.0 21.0 385 2-483 74-498 (526)
61 KOG1077 Vesicle coat complex A 97.0 1.3 2.9E-05 54.9 32.4 366 2-456 77-452 (938)
62 PF05804 KAP: Kinesin-associat 97.0 0.53 1.2E-05 60.7 30.7 375 52-486 260-657 (708)
63 KOG2259 Uncharacterized conser 97.0 0.092 2E-06 64.3 22.1 290 117-463 198-501 (823)
64 KOG1240 Protein kinase contain 96.9 0.085 1.9E-06 68.5 22.4 278 98-440 439-730 (1431)
65 PF12460 MMS19_C: RNAPII trans 96.9 2 4.4E-05 52.8 34.8 195 285-488 190-404 (415)
66 PF13646 HEAT_2: HEAT repeats; 96.8 0.0073 1.6E-07 56.5 9.6 86 84-184 1-88 (88)
67 KOG1062 Vesicle coat complex A 96.8 2.7 5.9E-05 53.3 35.8 182 2-189 145-380 (866)
68 cd00020 ARM Armadillo/beta-cat 96.8 0.0055 1.2E-07 60.7 8.9 109 2-111 10-120 (120)
69 KOG1943 Beta-tubulin folding c 96.8 0.02 4.3E-07 73.5 15.3 212 1180-1394 205-475 (1133)
70 PF12717 Cnd1: non-SMC mitotic 96.7 0.12 2.6E-06 55.7 19.2 163 1203-1373 3-175 (178)
71 COG5240 SEC21 Vesicle coat com 96.7 0.67 1.4E-05 56.0 25.9 112 358-477 423-554 (898)
72 PF02985 HEAT: HEAT repeat; I 96.6 0.0029 6.4E-08 46.9 4.0 31 160-190 1-31 (31)
73 KOG1078 Vesicle coat complex C 96.6 3.1 6.8E-05 52.7 31.7 37 158-194 244-280 (865)
74 KOG4524 Uncharacterized conser 96.4 0.69 1.5E-05 59.6 25.2 89 293-382 811-901 (1014)
75 PF02985 HEAT: HEAT repeat; I 96.4 0.005 1.1E-07 45.6 4.1 30 1349-1378 1-30 (31)
76 cd00020 ARM Armadillo/beta-cat 96.3 0.027 5.9E-07 55.6 10.4 104 1272-1376 8-119 (120)
77 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0085 1.8E-07 50.9 5.6 53 1320-1373 1-53 (55)
78 PF05804 KAP: Kinesin-associat 96.2 1 2.2E-05 58.2 26.0 327 42-436 291-650 (708)
79 KOG2160 Armadillo/beta-catenin 96.2 0.14 3E-06 59.3 16.5 178 1201-1380 96-285 (342)
80 KOG1059 Vesicle coat complex A 96.2 0.9 1.9E-05 56.6 23.7 236 117-463 144-385 (877)
81 KOG1020 Sister chromatid cohes 96.1 9.1 0.0002 52.0 34.3 111 76-191 810-924 (1692)
82 KOG1967 DNA repair/transcripti 96.1 0.032 6.9E-07 70.6 11.5 152 1223-1374 859-1021(1030)
83 KOG2259 Uncharacterized conser 96.1 0.56 1.2E-05 57.8 21.3 260 83-403 199-475 (823)
84 PF13251 DUF4042: Domain of un 96.1 0.16 3.4E-06 54.5 15.1 161 14-189 1-175 (182)
85 PF13646 HEAT_2: HEAT repeats; 96.1 0.033 7.2E-07 52.0 9.0 86 372-474 1-88 (88)
86 KOG1967 DNA repair/transcripti 96.0 0.049 1.1E-06 69.0 12.2 142 1185-1329 867-1018(1030)
87 COG5096 Vesicle coat complex, 96.0 0.16 3.4E-06 65.0 16.7 168 8-189 28-196 (757)
88 PF13513 HEAT_EZ: HEAT-like re 95.9 0.012 2.5E-07 50.0 4.7 54 55-108 1-54 (55)
89 cd03567 VHS_GGA VHS domain fam 95.9 0.1 2.2E-06 53.4 12.2 110 800-920 14-131 (139)
90 PF13251 DUF4042: Domain of un 95.9 0.051 1.1E-06 58.1 10.5 133 1246-1378 2-175 (182)
91 KOG1991 Nuclear transport rece 95.9 9.4 0.0002 49.9 37.2 444 2-501 92-600 (1010)
92 KOG2032 Uncharacterized conser 95.8 6.7 0.00015 47.5 27.9 205 102-396 199-413 (533)
93 PF12717 Cnd1: non-SMC mitotic 95.7 0.18 3.9E-06 54.3 13.9 113 1243-1359 1-116 (178)
94 PF04118 Dopey_N: Dopey, N-ter 95.6 0.74 1.6E-05 53.6 19.4 214 281-500 7-273 (307)
95 PF13001 Ecm29: Proteasome sta 95.6 5.2 0.00011 50.4 28.6 115 73-190 14-136 (501)
96 cd03568 VHS_STAM VHS domain fa 95.6 0.14 3E-06 52.9 12.1 107 800-917 13-122 (144)
97 KOG1243 Protein kinase [Genera 95.6 0.076 1.6E-06 66.0 11.7 145 1242-1392 266-418 (690)
98 KOG0946 ER-Golgi vesicle-tethe 95.5 2.6 5.6E-05 53.3 24.1 170 2-192 25-199 (970)
99 KOG2032 Uncharacterized conser 95.5 0.38 8.3E-06 57.5 16.3 180 8-191 226-419 (533)
100 PF00790 VHS: VHS domain; Int 95.5 0.13 2.7E-06 53.2 11.2 108 800-918 18-131 (140)
101 PF10274 ParcG: Parkin co-regu 95.4 0.18 3.9E-06 53.6 12.1 114 2-116 41-169 (183)
102 KOG0392 SNF2 family DNA-depend 95.4 0.28 6.1E-06 64.2 15.8 175 1203-1381 748-929 (1549)
103 KOG1059 Vesicle coat complex A 95.3 12 0.00026 47.2 32.7 175 2-193 147-333 (877)
104 COG1413 FOG: HEAT repeat [Ener 95.3 9 0.00019 45.6 28.1 91 82-187 43-134 (335)
105 KOG1058 Vesicle coat complex C 95.2 13 0.00028 47.2 31.5 140 286-439 281-429 (948)
106 PLN03076 ARF guanine nucleotid 95.2 11 0.00024 53.8 31.3 313 9-382 1147-1514(1780)
107 PF04118 Dopey_N: Dopey, N-ter 95.1 0.82 1.8E-05 53.3 17.3 185 5-192 59-258 (307)
108 COG1413 FOG: HEAT repeat [Ener 95.0 0.39 8.5E-06 57.2 15.4 153 2-190 46-211 (335)
109 PF12231 Rif1_N: Rap1-interact 94.9 1.6 3.5E-05 52.8 20.2 200 1203-1406 8-238 (372)
110 COG5218 YCG1 Chromosome conden 94.9 0.73 1.6E-05 55.9 16.2 183 1227-1409 88-299 (885)
111 PF12231 Rif1_N: Rap1-interact 94.8 2.3 4.9E-05 51.5 21.1 211 7-218 1-240 (372)
112 COG5096 Vesicle coat complex, 94.8 0.64 1.4E-05 59.6 16.5 167 295-482 29-196 (757)
113 KOG0168 Putative ubiquitin fus 94.6 1.3 2.8E-05 56.3 18.0 196 286-489 169-378 (1051)
114 KOG1058 Vesicle coat complex C 94.6 5.5 0.00012 50.3 22.9 84 295-391 327-417 (948)
115 KOG4535 HEAT and armadillo rep 94.5 6.7 0.00014 47.0 22.5 155 8-188 5-179 (728)
116 KOG1943 Beta-tubulin folding c 94.5 23 0.00051 46.8 31.8 368 4-484 180-579 (1133)
117 PF14500 MMS19_N: Dos2-interac 94.5 7.6 0.00016 44.5 23.1 194 3-199 3-249 (262)
118 KOG0803 Predicted E3 ubiquitin 94.5 0.86 1.9E-05 62.0 17.6 190 2-191 44-266 (1312)
119 COG5218 YCG1 Chromosome conden 94.5 3.7 8.1E-05 50.1 20.7 166 329-499 91-288 (885)
120 cd03565 VHS_Tom1 VHS domain fa 94.4 0.29 6.3E-06 50.4 10.4 107 800-917 14-127 (141)
121 KOG4224 Armadillo repeat prote 94.3 7.1 0.00015 45.2 21.5 182 2-188 88-280 (550)
122 TIGR02270 conserved hypothetic 94.2 0.36 7.8E-06 58.7 12.2 22 162-183 181-202 (410)
123 PF11640 TAN: Telomere-length 94.1 0.77 1.7E-05 48.2 13.0 121 2-122 7-148 (155)
124 COG5240 SEC21 Vesicle coat com 94.0 20 0.00044 44.0 27.1 362 54-489 37-415 (898)
125 KOG1077 Vesicle coat complex A 93.9 24 0.00052 44.6 34.0 66 13-81 162-227 (938)
126 KOG4653 Uncharacterized conser 93.9 1.3 2.8E-05 56.4 16.2 201 1187-1402 729-943 (982)
127 cd03561 VHS VHS domain family; 93.9 0.44 9.6E-06 48.6 10.5 99 801-910 14-117 (133)
128 smart00288 VHS Domain present 93.9 0.46 9.9E-06 48.5 10.6 107 800-917 13-123 (133)
129 KOG1061 Vesicle coat complex A 93.8 1.7 3.7E-05 55.0 17.1 173 5-191 19-192 (734)
130 PF12719 Cnd3: Nuclear condens 93.8 0.59 1.3E-05 54.8 12.8 128 1249-1376 2-142 (298)
131 KOG2025 Chromosome condensatio 93.8 1.3 2.7E-05 55.3 15.5 174 1202-1392 99-275 (892)
132 PF04826 Arm_2: Armadillo-like 93.8 0.96 2.1E-05 51.4 13.8 168 4-179 59-253 (254)
133 KOG1243 Protein kinase [Genera 93.7 0.52 1.1E-05 58.9 12.4 112 79-192 327-441 (690)
134 cd03569 VHS_Hrs_Vps27p VHS dom 93.4 0.69 1.5E-05 47.8 10.9 106 801-917 18-126 (142)
135 COG5095 TAF6 Transcription ini 93.3 1.6 3.4E-05 49.0 13.8 205 279-501 192-427 (450)
136 cd00197 VHS_ENTH_ANTH VHS, ENT 93.3 0.6 1.3E-05 46.3 10.0 97 801-904 10-114 (115)
137 KOG0392 SNF2 family DNA-depend 93.1 0.61 1.3E-05 61.3 11.8 179 301-484 749-931 (1549)
138 cd03572 ENTH_epsin_related ENT 93.1 0.49 1.1E-05 47.1 8.8 88 1208-1300 21-119 (122)
139 KOG2025 Chromosome condensatio 92.9 8.9 0.00019 48.2 20.6 149 327-475 83-256 (892)
140 TIGR02270 conserved hypothetic 92.8 1.2 2.6E-05 54.3 13.5 115 1232-1372 88-202 (410)
141 PF08167 RIX1: rRNA processing 92.6 0.98 2.1E-05 48.0 11.1 128 1269-1398 23-164 (165)
142 cd03567 VHS_GGA VHS domain fam 92.4 5.4 0.00012 41.0 15.6 108 284-402 4-119 (139)
143 cd03568 VHS_STAM VHS domain fa 92.1 3.6 7.9E-05 42.6 14.1 106 286-402 5-113 (144)
144 KOG2149 Uncharacterized conser 92.1 3.2 6.9E-05 49.2 15.0 119 1186-1308 59-178 (393)
145 KOG1020 Sister chromatid cohes 92.1 64 0.0014 44.5 38.8 102 4-112 821-922 (1692)
146 PF08506 Cse1: Cse1; InterPro 92.1 22 0.00048 42.9 22.8 95 296-394 266-370 (370)
147 KOG4653 Uncharacterized conser 92.0 4.5 9.7E-05 51.8 17.0 186 3-199 731-929 (982)
148 PF04826 Arm_2: Armadillo-like 91.9 3.1 6.7E-05 47.3 14.6 186 1187-1382 14-210 (254)
149 KOG1837 Uncharacterized conser 91.8 2.6 5.6E-05 57.2 15.4 183 1203-1387 1409-1621(1621)
150 PF05918 API5: Apoptosis inhib 91.8 8.1 0.00018 48.5 19.0 164 13-190 36-205 (556)
151 PF05918 API5: Apoptosis inhib 91.8 2.1 4.6E-05 53.5 14.0 123 1229-1359 58-189 (556)
152 PF14500 MMS19_N: Dos2-interac 91.6 4.1 9E-05 46.6 15.2 185 1203-1392 55-253 (262)
153 PF08167 RIX1: rRNA processing 91.6 4.5 9.8E-05 42.9 14.6 133 36-199 20-154 (165)
154 PF12719 Cnd3: Nuclear condens 91.3 2.2 4.7E-05 50.0 13.2 127 61-189 3-144 (298)
155 cd03569 VHS_Hrs_Vps27p VHS dom 91.1 6.5 0.00014 40.6 14.7 109 282-401 5-116 (142)
156 PF10363 DUF2435: Protein of u 91.1 1.3 2.8E-05 42.1 8.7 85 2-95 6-90 (92)
157 PF08623 TIP120: TATA-binding 91.1 2.1 4.5E-05 45.3 11.1 113 1267-1381 5-151 (169)
158 KOG0803 Predicted E3 ubiquitin 90.9 4.4 9.6E-05 55.4 16.6 193 1183-1381 39-267 (1312)
159 PLN03076 ARF guanine nucleotid 90.6 8.3 0.00018 55.0 19.5 173 298-485 373-554 (1780)
160 cd00197 VHS_ENTH_ANTH VHS, ENT 90.6 2.9 6.2E-05 41.5 11.3 103 2-109 2-113 (115)
161 PF00790 VHS: VHS domain; Int 90.6 7 0.00015 40.3 14.5 112 281-403 5-122 (140)
162 KOG2274 Predicted importin 9 [ 90.5 19 0.0004 46.8 20.2 144 1243-1388 586-749 (1005)
163 KOG2160 Armadillo/beta-catenin 90.4 15 0.00032 43.2 18.1 177 10-188 94-282 (342)
164 KOG0414 Chromosome condensatio 90.3 82 0.0018 42.5 32.9 104 86-191 316-431 (1251)
165 KOG2149 Uncharacterized conser 89.7 5.4 0.00012 47.3 14.0 110 42-152 59-175 (393)
166 PF10521 DUF2454: Protein of u 89.6 8.6 0.00019 44.7 15.9 143 1218-1361 107-278 (282)
167 cd03572 ENTH_epsin_related ENT 89.4 3.7 8E-05 41.0 10.7 98 9-111 11-119 (122)
168 PF12830 Nipped-B_C: Sister ch 89.4 1.6 3.5E-05 47.3 9.1 84 1271-1358 8-93 (187)
169 PF10363 DUF2435: Protein of u 88.9 1.4 2.9E-05 41.9 7.0 71 1313-1385 10-80 (92)
170 KOG2137 Protein kinase [Signal 88.9 21 0.00045 45.5 18.9 105 1265-1373 383-492 (700)
171 smart00288 VHS Domain present 88.6 9 0.00019 39.1 13.3 106 286-402 5-114 (133)
172 KOG2549 Transcription initiati 88.4 17 0.00038 44.7 17.3 193 280-482 203-419 (576)
173 PF04388 Hamartin: Hamartin pr 88.4 4.3 9.2E-05 52.8 13.3 146 1234-1394 8-157 (668)
174 KOG4224 Armadillo repeat prote 87.9 1.9 4.2E-05 49.6 8.5 145 1232-1377 210-363 (550)
175 KOG4535 HEAT and armadillo rep 87.7 2.6 5.7E-05 50.2 9.6 135 1203-1337 11-181 (728)
176 KOG0414 Chromosome condensatio 87.6 8.8 0.00019 51.0 15.1 129 53-190 935-1066(1251)
177 COG5116 RPN2 26S proteasome re 87.4 2.1 4.6E-05 51.9 8.8 96 91-194 561-656 (926)
178 KOG4825 Component of synaptic 87.3 7.4 0.00016 46.0 12.7 187 4-191 398-600 (666)
179 cd03565 VHS_Tom1 VHS domain fa 87.2 16 0.00035 37.7 14.2 106 285-401 5-117 (141)
180 PF08064 UME: UME (NUC010) dom 87.1 1.9 4.2E-05 42.1 7.1 73 1318-1393 27-100 (107)
181 KOG2062 26S proteasome regulat 87.0 2.8 6E-05 52.6 9.8 132 48-192 526-657 (929)
182 PF05536 Neurochondrin: Neuroc 87.0 20 0.00044 45.6 17.9 186 1185-1375 5-211 (543)
183 PF08161 NUC173: NUC173 domain 86.8 7.2 0.00016 42.7 12.0 109 343-455 14-123 (198)
184 KOG2549 Transcription initiati 86.5 7.5 0.00016 47.7 12.8 150 1-186 209-368 (576)
185 cd08050 TAF6 TATA Binding Prot 86.4 6.1 0.00013 47.2 12.3 104 2-115 181-301 (343)
186 KOG1949 Uncharacterized conser 86.4 4.7 0.0001 50.3 11.0 144 332-479 177-332 (1005)
187 KOG2137 Protein kinase [Signal 86.1 17 0.00037 46.3 15.9 178 4-191 278-461 (700)
188 KOG1525 Sister chromatid cohes 86.0 1.2E+02 0.0026 42.2 25.0 312 127-484 11-335 (1266)
189 cd03561 VHS VHS domain family; 85.5 19 0.00042 36.7 13.7 106 286-402 5-115 (133)
190 PF10521 DUF2454: Protein of u 85.4 8.4 0.00018 44.7 12.5 162 10-172 86-278 (282)
191 PF12783 Sec7_N: Guanine nucle 85.0 4.6 0.0001 42.9 9.4 88 803-890 34-128 (168)
192 PF12783 Sec7_N: Guanine nucle 84.7 13 0.00028 39.5 12.7 109 12-122 35-155 (168)
193 PF08161 NUC173: NUC173 domain 84.6 18 0.00039 39.6 13.7 82 1235-1316 5-86 (198)
194 PF12765 Cohesin_HEAT: HEAT re 84.1 1.1 2.5E-05 35.7 3.1 40 1329-1371 2-41 (42)
195 KOG1525 Sister chromatid cohes 83.9 3.7 8E-05 56.1 9.7 142 1187-1336 261-406 (1266)
196 PF03378 CAS_CSE1: CAS/CSE pro 83.9 8.4 0.00018 47.5 12.1 80 1289-1370 177-266 (435)
197 PF11698 V-ATPase_H_C: V-ATPas 83.7 4.2 9E-05 40.4 7.5 69 1306-1376 43-114 (119)
198 smart00638 LPD_N Lipoprotein N 83.6 22 0.00047 45.9 16.4 169 1186-1375 358-543 (574)
199 cd08050 TAF6 TATA Binding Prot 83.5 23 0.0005 42.4 15.3 118 279-403 173-301 (343)
200 KOG0889 Histone acetyltransfer 83.3 1.8E+02 0.0038 44.2 25.3 168 2-199 987-1166(3550)
201 KOG1078 Vesicle coat complex C 82.5 22 0.00048 45.5 14.7 172 8-187 291-531 (865)
202 KOG2199 Signal transducing ada 82.2 16 0.00035 42.9 12.4 107 284-401 11-120 (462)
203 PF14664 RICTOR_N: Rapamycin-i 82.0 37 0.00081 41.0 16.3 170 297-474 80-265 (371)
204 KOG1087 Cytosolic sorting prot 81.7 7.2 0.00016 48.0 10.2 97 6-111 12-112 (470)
205 PF11865 DUF3385: Domain of un 81.4 11 0.00024 39.7 10.4 143 38-190 7-159 (160)
206 PF08064 UME: UME (NUC010) dom 81.1 13 0.00028 36.4 9.9 89 1224-1314 5-97 (107)
207 PF12074 DUF3554: Domain of un 80.3 19 0.0004 43.1 13.2 152 1229-1381 60-239 (339)
208 smart00802 UME Domain in UVSB 80.2 14 0.0003 36.1 9.7 90 1224-1315 5-98 (107)
209 KOG1087 Cytosolic sorting prot 80.1 20 0.00043 44.2 13.1 108 285-403 5-116 (470)
210 COG5098 Chromosome condensatio 79.5 26 0.00057 44.0 13.5 103 48-151 306-419 (1128)
211 KOG4524 Uncharacterized conser 79.3 2.3E+02 0.005 37.8 32.8 75 40-114 277-351 (1014)
212 PF01347 Vitellogenin_N: Lipop 79.0 25 0.00053 45.9 14.7 170 1187-1375 397-587 (618)
213 PF08389 Xpo1: Exportin 1-like 79.0 19 0.00042 36.8 11.2 137 1208-1372 8-148 (148)
214 KOG3961 Uncharacterized conser 78.7 3.2 6.8E-05 44.7 5.0 84 1307-1391 115-201 (262)
215 PF12830 Nipped-B_C: Sister ch 78.5 9.9 0.00021 41.3 9.1 73 119-196 10-82 (187)
216 KOG1949 Uncharacterized conser 78.0 53 0.0011 41.6 15.5 142 4-145 179-329 (1005)
217 COG5064 SRP1 Karyopherin (impo 77.3 4 8.6E-05 46.8 5.6 155 1221-1377 235-398 (526)
218 PF11640 TAN: Telomere-length 77.3 35 0.00077 35.8 12.5 109 1187-1298 6-135 (155)
219 PF14664 RICTOR_N: Rapamycin-i 77.1 53 0.0011 39.7 15.5 142 1238-1387 34-184 (371)
220 KOG1517 Guanine nucleotide bin 77.0 16 0.00034 48.1 11.1 99 387-487 574-684 (1387)
221 KOG0567 HEAT repeat-containing 76.6 1.4E+02 0.0031 33.9 23.2 91 331-436 189-281 (289)
222 KOG0946 ER-Golgi vesicle-tethe 76.4 48 0.001 42.6 14.8 169 1185-1376 22-194 (970)
223 PF01603 B56: Protein phosphat 76.1 6.5 0.00014 48.2 7.6 103 806-911 270-375 (409)
224 PF11865 DUF3385: Domain of un 76.1 32 0.00069 36.3 11.8 51 348-398 106-156 (160)
225 PF03224 V-ATPase_H_N: V-ATPas 76.0 24 0.00052 41.7 12.2 149 1186-1338 106-272 (312)
226 KOG2081 Nuclear transport regu 75.5 1.3E+02 0.0029 37.5 18.0 148 40-191 290-460 (559)
227 KOG4413 26S proteasome regulat 75.5 80 0.0017 36.5 14.9 167 1-173 84-271 (524)
228 KOG2062 26S proteasome regulat 75.4 25 0.00054 44.7 12.0 158 289-465 523-681 (929)
229 COG5593 Nucleic-acid-binding p 75.0 43 0.00093 40.8 13.3 96 877-1006 229-327 (821)
230 PF05536 Neurochondrin: Neuroc 75.0 50 0.0011 42.2 15.2 183 1-190 7-215 (543)
231 KOG2011 Sister chromatid cohes 74.6 94 0.002 41.9 17.6 79 417-499 298-378 (1048)
232 PF08569 Mo25: Mo25-like; Int 74.1 1E+02 0.0022 36.8 16.5 177 295-479 86-284 (335)
233 PF08389 Xpo1: Exportin 1-like 73.0 37 0.00081 34.7 11.4 144 16-183 5-148 (148)
234 PF01603 B56: Protein phosphat 72.8 1.2E+02 0.0026 37.3 17.4 200 2-216 136-346 (409)
235 COG5095 TAF6 Transcription ini 72.7 1.2E+02 0.0025 34.8 15.2 158 1243-1400 249-427 (450)
236 PF09324 DUF1981: Domain of un 72.3 13 0.00027 34.9 6.8 69 1229-1297 16-85 (86)
237 KOG1837 Uncharacterized conser 72.2 96 0.0021 43.2 17.0 72 126-197 1549-1620(1621)
238 PF11864 DUF3384: Domain of un 72.2 52 0.0011 41.2 14.4 163 1209-1376 155-329 (464)
239 PF08767 CRM1_C: CRM1 C termin 71.7 97 0.0021 36.7 15.7 135 1205-1339 44-198 (319)
240 KOG0567 HEAT repeat-containing 71.6 23 0.00049 39.9 9.5 43 131-183 233-275 (289)
241 PF00514 Arm: Armadillo/beta-c 71.5 6.2 0.00014 31.1 3.9 29 159-187 12-40 (41)
242 PF12333 Ipi1_N: Rix1 complex 71.2 14 0.00031 35.8 7.1 43 868-910 3-45 (102)
243 KOG2199 Signal transducing ada 71.1 29 0.00062 41.0 10.5 94 10-112 23-119 (462)
244 PF08713 DNA_alkylation: DNA a 70.9 45 0.00099 36.6 12.2 141 44-200 54-196 (213)
245 KOG2022 Nuclear transport rece 70.5 1.7E+02 0.0036 38.5 17.7 136 299-440 481-624 (982)
246 KOG1517 Guanine nucleotide bin 69.8 74 0.0016 42.3 14.5 153 1202-1374 571-729 (1387)
247 KOG2274 Predicted importin 9 [ 69.0 46 0.001 43.4 12.5 124 1234-1357 40-179 (1005)
248 COG5116 RPN2 26S proteasome re 68.9 35 0.00075 42.0 10.9 96 335-439 558-654 (926)
249 PF12765 Cohesin_HEAT: HEAT re 68.3 7.9 0.00017 31.0 3.8 26 158-183 17-42 (42)
250 PF03224 V-ATPase_H_N: V-ATPas 67.7 2.6E+02 0.0055 33.0 18.8 108 3-112 109-225 (312)
251 PF12243 CTK3: CTD kinase subu 67.6 65 0.0014 33.1 11.2 106 876-986 8-118 (139)
252 smart00802 UME Domain in UVSB 66.7 16 0.00035 35.7 6.5 68 1319-1389 28-96 (107)
253 PF12074 DUF3554: Domain of un 66.7 2.7E+02 0.0057 33.3 18.4 192 286-488 24-246 (339)
254 PF08568 Kinetochor_Ybp2: Unch 66.6 70 0.0015 41.8 14.4 75 1285-1359 80-176 (633)
255 KOG1991 Nuclear transport rece 66.0 4.6E+02 0.0099 35.3 36.9 165 16-185 389-573 (1010)
256 PF13001 Ecm29: Proteasome sta 65.9 25 0.00055 44.4 9.8 137 5-146 325-487 (501)
257 PF11701 UNC45-central: Myosin 65.8 28 0.0006 36.7 8.6 128 53-185 17-156 (157)
258 PF08506 Cse1: Cse1; InterPro 65.5 79 0.0017 38.3 13.4 125 55-183 225-370 (370)
259 PF12530 DUF3730: Protein of u 65.5 1.4E+02 0.0031 33.6 14.8 126 1240-1376 11-150 (234)
260 PF11841 DUF3361: Domain of un 64.9 53 0.0012 34.5 10.1 62 131-193 73-136 (160)
261 PF11698 V-ATPase_H_C: V-ATPas 64.9 14 0.00031 36.7 5.7 105 363-479 5-116 (119)
262 cd00256 VATPase_H VATPase_H, r 63.9 1.2E+02 0.0026 37.3 14.5 146 1187-1335 103-258 (429)
263 COG5098 Chromosome condensatio 63.7 49 0.0011 41.7 10.9 110 1-111 301-415 (1128)
264 PF10441 Urb2: Urb2/Npa2 famil 63.3 1.9E+02 0.0041 32.3 15.2 175 811-1014 8-213 (223)
265 PF02854 MIF4G: MIF4G domain; 63.1 2.2E+02 0.0048 30.6 17.1 166 34-218 11-182 (209)
266 KOG1293 Proteins containing ar 63.1 1.2E+02 0.0025 38.6 14.1 151 343-496 391-551 (678)
267 PF08623 TIP120: TATA-binding 62.5 34 0.00074 36.3 8.4 78 419-501 40-117 (169)
268 PF00514 Arm: Armadillo/beta-c 62.0 14 0.00031 29.0 4.3 29 1348-1376 12-40 (41)
269 cd00256 VATPase_H VATPase_H, r 61.9 1E+02 0.0023 37.8 13.5 69 1306-1376 353-424 (429)
270 PF01417 ENTH: ENTH domain; I 61.5 78 0.0017 31.8 10.6 97 8-110 12-120 (125)
271 PF12243 CTK3: CTD kinase subu 61.2 1E+02 0.0022 31.8 11.1 107 368-479 6-120 (139)
272 PF12612 TFCD_C: Tubulin foldi 61.2 1E+02 0.0022 33.6 12.2 105 3-112 11-117 (193)
273 PF08713 DNA_alkylation: DNA a 59.6 35 0.00075 37.6 8.5 141 1235-1389 56-196 (213)
274 KOG0413 Uncharacterized conser 58.9 2.1E+02 0.0046 37.9 15.4 143 1228-1376 470-644 (1529)
275 PF12333 Ipi1_N: Rix1 complex 56.8 32 0.0007 33.3 6.6 65 1338-1408 1-65 (102)
276 PF03378 CAS_CSE1: CAS/CSE pro 56.5 4.8E+02 0.01 32.4 18.8 185 1214-1407 55-253 (435)
277 KOG4413 26S proteasome regulat 56.5 29 0.00063 39.9 6.9 95 1282-1376 54-156 (524)
278 KOG4500 Rho/Rac GTPase guanine 54.7 4.8E+02 0.01 31.8 17.0 188 2-190 268-477 (604)
279 KOG1822 Uncharacterized conser 54.3 2.1E+02 0.0046 40.8 15.4 143 46-190 963-1129(2067)
280 PF08569 Mo25: Mo25-like; Int 54.1 1.6E+02 0.0036 35.0 13.2 120 3-122 168-295 (335)
281 PF01417 ENTH: ENTH domain; I 54.1 68 0.0015 32.2 8.7 96 802-905 14-121 (125)
282 PF14225 MOR2-PAG1_C: Cell mor 53.9 4E+02 0.0086 30.7 17.9 177 5-191 13-220 (262)
283 PF10193 Telomere_reg-2: Telom 52.4 91 0.002 30.9 9.1 84 1243-1330 18-110 (114)
284 KOG1992 Nuclear export recepto 52.3 3.7E+02 0.0079 35.4 16.0 163 319-501 223-411 (960)
285 KOG2011 Sister chromatid cohes 52.3 2.3E+02 0.005 38.5 15.0 160 16-185 262-432 (1048)
286 COG5656 SXM1 Importin, protein 51.0 6.9E+02 0.015 32.6 34.4 318 118-488 461-811 (970)
287 COG5656 SXM1 Importin, protein 51.0 3E+02 0.0066 35.7 14.8 167 1226-1395 404-586 (970)
288 KOG1293 Proteins containing ar 50.9 2.9E+02 0.0063 35.3 14.7 138 6-146 384-532 (678)
289 PF08767 CRM1_C: CRM1 C termin 50.6 3.1E+02 0.0067 32.5 14.8 165 1202-1375 134-314 (319)
290 KOG3961 Uncharacterized conser 50.4 39 0.00085 36.7 6.4 85 2-87 117-204 (262)
291 PF11707 Npa1: Ribosome 60S bi 49.2 1.4E+02 0.003 35.7 11.7 102 1273-1380 29-146 (330)
292 KOG2973 Uncharacterized conser 48.3 1.3E+02 0.0029 34.8 10.4 54 1232-1285 5-58 (353)
293 KOG1566 Conserved protein Mo25 48.2 5.2E+02 0.011 30.3 17.7 201 295-501 89-311 (342)
294 smart00638 LPD_N Lipoprotein N 47.7 2.9E+02 0.0062 35.7 15.3 162 2-182 396-572 (574)
295 PF06371 Drf_GBD: Diaphanous G 47.6 42 0.00092 36.0 6.6 58 130-187 128-186 (187)
296 KOG1993 Nuclear transport rece 47.0 2.2E+02 0.0047 37.2 12.9 137 1246-1387 503-657 (978)
297 KOG1822 Uncharacterized conser 46.3 2.8E+02 0.006 39.8 14.6 178 1188-1371 918-1121(2067)
298 PF14677 FANCI_S3: FANCI solen 45.8 2.9E+02 0.0063 30.8 12.7 116 49-171 86-203 (219)
299 PF14228 MOR2-PAG1_mid: Cell m 45.8 78 0.0017 43.6 9.7 84 809-905 488-572 (1120)
300 KOG1992 Nuclear export recepto 45.6 8.7E+02 0.019 32.2 25.2 121 59-194 265-397 (960)
301 PF14676 FANCI_S2: FANCI solen 44.4 2.1E+02 0.0046 30.2 10.7 116 1249-1373 37-157 (158)
302 PF14225 MOR2-PAG1_C: Cell mor 44.2 5.5E+02 0.012 29.5 16.8 129 870-1014 105-238 (262)
303 PF14726 RTTN_N: Rotatin, an a 43.9 1.4E+02 0.003 28.8 8.5 58 807-865 3-60 (98)
304 KOG2038 CAATT-binding transcri 43.8 1.7E+02 0.0037 37.8 11.3 114 1230-1347 304-421 (988)
305 KOG2753 Uncharacterized conser 43.4 4.8E+02 0.01 30.7 13.8 97 93-191 117-219 (378)
306 KOG1086 Cytosolic sorting prot 43.1 6.4E+02 0.014 30.6 15.0 68 43-110 47-122 (594)
307 KOG4825 Component of synaptic 43.0 5.3E+02 0.012 31.3 14.4 144 296-439 404-559 (666)
308 KOG2153 Protein involved in th 42.5 3.6E+02 0.0079 34.4 13.7 110 1-112 212-354 (704)
309 KOG0889 Histone acetyltransfer 41.9 1.3E+02 0.0029 45.3 11.2 162 328-489 983-1166(3550)
310 PF14228 MOR2-PAG1_mid: Cell m 41.5 6.1E+02 0.013 35.3 16.9 70 1231-1301 504-573 (1120)
311 PF04388 Hamartin: Hamartin pr 41.3 2.4E+02 0.0052 37.1 12.9 145 340-499 15-161 (668)
312 KOG1851 Uncharacterized conser 41.0 2.6E+02 0.0056 39.3 13.0 132 56-188 1452-1598(1710)
313 KOG2229 Protein required for a 40.4 2.6E+02 0.0056 34.6 11.6 94 95-189 33-130 (616)
314 KOG2753 Uncharacterized conser 39.9 4.9E+02 0.011 30.7 13.2 89 925-1021 160-252 (378)
315 PF11707 Npa1: Ribosome 60S bi 39.4 7.2E+02 0.016 29.5 18.2 96 48-144 63-184 (330)
316 PF11701 UNC45-central: Myosin 38.9 1.9E+02 0.004 30.5 9.5 128 339-473 19-154 (157)
317 KOG0891 DNA-dependent protein 38.3 3.9E+02 0.0086 39.9 15.0 203 1187-1400 482-700 (2341)
318 KOG4199 Uncharacterized conser 38.1 5.4E+02 0.012 30.4 13.2 144 327-476 285-442 (461)
319 smart00582 RPR domain present 37.5 62 0.0013 32.2 5.4 76 835-912 32-116 (121)
320 PF04078 Rcd1: Cell differenti 37.4 3E+02 0.0066 31.4 11.1 134 1243-1381 8-169 (262)
321 PF01347 Vitellogenin_N: Lipop 36.9 1.5E+02 0.0033 38.5 10.4 124 53-185 447-586 (618)
322 KOG4199 Uncharacterized conser 36.3 8E+02 0.017 29.1 24.4 56 342-397 387-442 (461)
323 KOG1789 Endocytosis protein RM 35.2 2.2E+02 0.0047 38.2 10.4 158 811-1010 1745-1908(2235)
324 PF12612 TFCD_C: Tubulin foldi 35.1 2.6E+02 0.0057 30.4 10.3 106 1268-1379 4-118 (193)
325 cd06561 AlkD_like A new struct 35.1 6E+02 0.013 27.3 15.0 76 1309-1390 108-183 (197)
326 PF14726 RTTN_N: Rotatin, an a 35.0 3.7E+02 0.0079 26.0 9.8 58 1203-1261 2-61 (98)
327 PF12530 DUF3730: Protein of u 34.7 7E+02 0.015 28.0 19.2 108 1252-1363 106-218 (234)
328 KOG2759 Vacuolar H+-ATPase V1 34.6 73 0.0016 38.3 6.0 71 1304-1376 364-437 (442)
329 PF06685 DUF1186: Protein of u 34.4 6.5E+02 0.014 28.7 13.3 23 2-24 4-26 (249)
330 smart00185 ARM Armadillo/beta- 34.3 54 0.0012 25.1 3.5 29 159-187 12-40 (41)
331 KOG2022 Nuclear transport rece 33.7 1.3E+03 0.029 30.9 34.3 146 39-191 460-622 (982)
332 cd03562 CID CID (CTD-Interacti 33.5 1.5E+02 0.0032 29.2 7.3 76 834-909 36-112 (114)
333 PF12397 U3snoRNP10: U3 small 32.8 3.1E+02 0.0066 27.2 9.6 72 78-149 2-76 (121)
334 KOG2085 Serine/threonine prote 32.8 1.7E+02 0.0038 35.1 8.6 98 19-124 319-425 (457)
335 KOG4500 Rho/Rac GTPase guanine 32.7 4.3E+02 0.0094 32.1 11.7 88 1229-1317 314-413 (604)
336 PF10193 Telomere_reg-2: Telom 32.6 3.3E+02 0.0071 27.0 9.5 89 848-937 18-111 (114)
337 PF10350 DUF2428: Putative dea 32.3 8.1E+02 0.017 27.9 14.1 153 802-987 58-226 (255)
338 PF06371 Drf_GBD: Diaphanous G 31.9 2.4E+02 0.0052 30.1 9.4 27 83-109 159-185 (187)
339 PF11841 DUF3361: Domain of un 31.8 4.5E+02 0.0097 27.8 10.6 119 1186-1305 12-136 (160)
340 PF14911 MMS22L_C: S-phase gen 30.9 3.8E+02 0.0083 32.4 11.2 106 1249-1359 230-348 (373)
341 KOG2021 Nuclear mRNA export fa 30.7 1.4E+03 0.03 30.2 30.9 104 91-199 449-575 (980)
342 KOG2973 Uncharacterized conser 29.9 3.3E+02 0.0072 31.8 9.8 106 2-111 6-111 (353)
343 KOG1993 Nuclear transport rece 29.5 1.2E+03 0.025 31.0 15.3 116 295-414 537-665 (978)
344 KOG2229 Protein required for a 29.3 7.4E+02 0.016 30.9 13.0 49 22-71 20-68 (616)
345 PF00613 PI3Ka: Phosphoinositi 29.3 1E+02 0.0022 33.4 5.7 76 1272-1354 46-121 (184)
346 cd03571 ENTH_epsin ENTH domain 28.8 5.1E+02 0.011 26.1 10.1 96 9-110 11-117 (123)
347 cd00872 PI3Ka_I Phosphoinositi 28.6 2.1E+02 0.0045 30.7 7.7 76 1272-1354 40-115 (171)
348 PF07571 DUF1546: Protein of u 28.5 2.1E+02 0.0045 27.2 7.0 58 129-186 17-76 (92)
349 PF12422 Condensin2nSMC: Conde 28.4 7E+02 0.015 26.0 13.1 31 158-188 118-148 (152)
350 KOG2122 Beta-catenin-binding p 28.3 1.7E+03 0.038 31.8 17.1 188 1189-1390 238-462 (2195)
351 KOG4346 Uncharacterized conser 28.2 3.8E+02 0.0083 34.5 10.7 98 51-151 519-622 (849)
352 KOG0929 Guanine nucleotide exc 27.6 1.9E+02 0.0041 40.7 8.8 135 1222-1383 1166-1304(1514)
353 smart00145 PI3Ka Phosphoinosit 27.2 2E+02 0.0044 31.1 7.5 76 1272-1354 45-120 (184)
354 KOG1104 Nuclear cap-binding co 27.2 1.4E+03 0.029 30.1 15.4 140 1203-1366 25-166 (759)
355 KOG3818 DNA polymerase epsilon 27.0 1.3E+02 0.0027 36.5 6.2 74 420-494 21-94 (525)
356 PF10441 Urb2: Urb2/Npa2 famil 26.8 9.1E+02 0.02 26.8 15.9 148 1248-1396 6-206 (223)
357 smart00273 ENTH Epsin N-termin 26.2 1.9E+02 0.0042 29.0 6.8 39 832-870 36-75 (127)
358 cd06561 AlkD_like A new struct 25.8 8.4E+02 0.018 26.1 16.7 75 408-490 108-182 (197)
359 PF09324 DUF1981: Domain of un 25.7 2.3E+02 0.005 26.5 6.7 66 406-473 18-83 (86)
360 KOG0368 Acetyl-CoA carboxylase 25.5 9.3E+02 0.02 34.2 14.0 118 800-922 821-954 (2196)
361 KOG2073 SAP family cell cycle 25.2 5.1E+02 0.011 34.7 11.8 82 105-199 149-236 (838)
362 cd00864 PI3Ka Phosphoinositide 25.2 2.7E+02 0.006 29.1 7.9 77 1271-1354 39-115 (152)
363 PF12397 U3snoRNP10: U3 small 24.9 3.6E+02 0.0078 26.7 8.5 57 404-463 5-61 (121)
364 KOG2050 Puf family RNA-binding 24.8 8.4E+02 0.018 31.0 12.7 73 876-949 285-359 (652)
365 PF05997 Nop52: Nucleolar prot 24.4 1E+03 0.022 26.5 20.5 70 3-73 4-75 (217)
366 KOG1048 Neural adherens juncti 24.0 1.2E+03 0.026 30.6 14.4 156 41-206 518-700 (717)
367 PF04499 SAPS: SIT4 phosphatas 23.8 3.9E+02 0.0084 33.6 10.1 72 106-191 23-95 (475)
368 COG5537 IRR1 Cohesin [Cell div 23.6 1E+03 0.022 30.5 12.9 114 364-479 268-387 (740)
369 KOG2085 Serine/threonine prote 23.5 1.8E+02 0.004 35.0 6.6 74 833-906 339-415 (457)
370 KOG1848 Uncharacterized conser 23.1 1.6E+03 0.035 31.8 15.6 155 1221-1375 919-1130(1610)
371 COG5537 IRR1 Cohesin [Cell div 22.6 1.1E+03 0.024 30.1 13.1 103 4-112 280-387 (740)
372 smart00185 ARM Armadillo/beta- 22.4 1.2E+02 0.0027 23.0 3.7 28 1348-1375 12-39 (41)
373 KOG1848 Uncharacterized conser 22.4 6.3E+02 0.014 35.3 11.8 147 330-501 998-1150(1610)
374 cd00869 PI3Ka_II Phosphoinosit 22.4 2.7E+02 0.0059 29.7 7.2 76 1272-1354 40-115 (169)
375 KOG2213 Apoptosis inhibitor 5/ 22.4 1.4E+03 0.031 27.6 15.5 67 37-112 25-91 (460)
376 cd07920 Pumilio Pumilio-family 22.3 4.9E+02 0.011 30.4 10.5 137 1212-1360 61-199 (322)
377 KOG3678 SARM protein (with ste 22.1 4.4E+02 0.0095 32.2 9.3 72 1185-1260 180-252 (832)
378 KOG2056 Equilibrative nucleosi 22.0 3.7E+02 0.0081 31.8 8.7 73 1227-1299 54-137 (336)
379 KOG2286 Exocyst complex subuni 21.7 1.4E+03 0.031 29.9 14.5 170 812-1014 471-648 (667)
380 cd07064 AlkD_like_1 A new stru 21.2 1.1E+03 0.024 25.9 15.0 162 1185-1370 45-206 (208)
381 PF02854 MIF4G: MIF4G domain; 21.2 1E+03 0.022 25.3 15.7 62 1320-1384 100-163 (209)
382 KOG1823 DRIM (Down-regulated i 20.8 2E+03 0.043 30.9 16.1 42 158-199 563-604 (1364)
383 cd03571 ENTH_epsin ENTH domain 20.6 3.3E+02 0.0072 27.4 7.1 74 832-905 34-118 (123)
384 COG5221 DOP1 Dopey and related 20.4 1.2E+03 0.026 31.9 13.2 208 280-499 15-274 (1618)
385 PF04078 Rcd1: Cell differenti 20.4 1.3E+03 0.029 26.4 12.8 171 1202-1373 9-214 (262)
386 smart00273 ENTH Epsin N-termin 20.1 7.9E+02 0.017 24.5 9.9 61 6-71 9-70 (127)
387 PF04869 Uso1_p115_head: Uso1 20.1 2.2E+02 0.0049 33.5 6.6 174 803-989 50-233 (312)
No 1
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=100.00 E-value=3.4e-47 Score=428.37 Aligned_cols=506 Identities=24% Similarity=0.347 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHHhhC-
Q 000565 808 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI- 886 (1418)
Q Consensus 808 R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~l~~klg- 886 (1418)
..+|+..|..++..-.-. . .++.++.+.+.+-+.+.+-+.. |+++..++..+...+..|+..-+-.+|.|.|
T Consensus 2 k~~~~~~l~~~i~d~~~~-~---~~~k~~~~~~~~~~~e~~~~~~---l~~~S~~~rt~~srls~w~~l~l~k~~~k~g~ 74 (516)
T KOG2956|consen 2 KREGIKNLNQIITDPNLC-P---LEIKNIGDTLNRLLAEGNNTLV---LETISIFVKTHYSRLSNWLKLALGKLFAKKGA 74 (516)
T ss_pred cchhhhhhhhhhcccccC-h---HHHHHHhhhHHHhhhcccceee---eehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777776553321 1 4677888888888888777654 4999999999999999999999999999998
Q ss_pred CCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccC---CCchhHHHHHHHHHHHHhhhhcCCCCCCCchhHHHHHHHH
Q 000565 887 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 963 (1418)
Q Consensus 887 D~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~---~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i 963 (1418)
+....+.+..-.....+..+|++..|+. ++.++.+. ..||.+...++|++.++.+|. ..+...+.+..+.++.|+
T Consensus 75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~-~~g~s~~t~~~~~s~rkm 152 (516)
T KOG2956|consen 75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYP-ERGTSPNTKETKAAIRKM 152 (516)
T ss_pred HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhccccccc-ccCCCCCCCcchhhhhhc
Confidence 9999999999999999999999999999 99999875 479999999999999999985 344445667889999999
Q ss_pred cccccc-CCHH-HHHHHHHHHHHHhccCChHHHHHHHhhCCHHHHHHHHHHHhhhcchhHHHHHHHHhhhhcccccCCCC
Q 000565 964 TPLVHD-KNTK-LKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY 1041 (1418)
Q Consensus 964 ~~l~~d-ks~~-vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 1041 (1418)
.+|+.| +... +-......+.++|.++ -..|+..+..|++.++++..+.++. +..++ +++
T Consensus 153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~~~--------------n~~~~----~~~ 213 (516)
T KOG2956|consen 153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSLQS--------------NGIDN----GSP 213 (516)
T ss_pred cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHHHh--------------hCcCC----CCC
Confidence 999877 4433 3445566677777666 3348888888999999998666552 11111 011
Q ss_pred CCCCCC-CCCCccccccccCCCCCCCCCCCCCCCCCCCCCccccchhhcccCCCCCCCCccchHhhhhhccCCCCCCCCc
Q 000565 1042 DPSDVV-GTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 1120 (1418)
Q Consensus 1042 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1418)
++.... +..++..+....-.....+..+.++ ...+.+.
T Consensus 214 ~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~--------------------------~~~~~~~--------------- 252 (516)
T KOG2956|consen 214 SPSAEKERFDSSNNKPSLPLSPPEEEKPGLGS--------------------------TKVNPEE--------------- 252 (516)
T ss_pred CchhhhcccccccccccccCCChhhcccCCCc--------------------------cccCccc---------------
Confidence 010000 0000001000000000000000000 0000000
Q ss_pred cccCCCCCCCCCCCCCCCCcCcccccccccccccCCCCCCCCCccccCCCCCccccccCCCCCCCCHHHHHHHhhcCCCC
Q 000565 1121 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 1200 (1418)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~ll~~l~~~~~~ 1200 (1418)
.+ .+.++.+... . ....+..+.++.. ....|..++|.++|++++.+ +
T Consensus 253 ---------~~-~~n~~~~~~~--l-----~e~~~~~~~~~~~--------------p~~~~~~~~v~~~l~~~~g~-e- 299 (516)
T KOG2956|consen 253 ---------LR-LSNETERLSR--L-----EEYSTDDSMDQLT--------------PNSVDQSALVADLLKEISGS-E- 299 (516)
T ss_pred ---------cc-cccchhhhhh--c-----hhhccCcchhhCC--------------CCCcchhHHHHHHHHhccCc-c-
Confidence 00 0000000000 0 0000000011111 01123445678889888887 3
Q ss_pred ChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Q 000565 1201 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 1279 (1418)
Q Consensus 1201 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d-~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~ 1279 (1418)
..+++++|+.+|..+++++++.+|++||++||..++++|+| .+..+++.||++|++||++|+.+|.+|+|+.++|+|++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999 68889999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000565 1280 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1280 ~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d 1359 (1418)
..|++++|.+.|++++.+++..+.|.+||.+|+|+|.+.++|+.++||||+++++++++.|+|...+++|+|+++++|+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence 99999999888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh-hcccccccccChHHHHHHHHHHHhhhhcccCCccC
Q 000565 1360 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1415 (1418)
Q Consensus 1360 ~~seVRkaAv~~lv~~~~~lg-~~~~p~l~~L~~s~~kll~~yi~r~~~~~~~~~~~ 1415 (1418)
+++.|||+||||||++|..+| ++|+|||..|+.+|++||++||+|+++.++|+++|
T Consensus 460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~ 516 (516)
T KOG2956|consen 460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD 516 (516)
T ss_pred chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999 79999999999999999999999999999999875
No 2
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.96 E-value=6.5e-28 Score=270.54 Aligned_cols=217 Identities=31% Similarity=0.554 Sum_probs=154.4
Q ss_pred HHHHHHhhhhc---CCCCCHHHHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 000565 283 IREFEKIGSTL---VPDKDWSVRIAAMQRVEGLVLGGA--ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLS 357 (1418)
Q Consensus 283 ~~~l~~i~~~l---~~~~dW~~R~~AL~~L~~ll~~~~--~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La 357 (1418)
+.+++.|.+.| .++.||++|.+||+.|+.++.++. ..++.|...++.+...+...+.|+|++|+++||.++..|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~ 81 (228)
T PF12348_consen 2 EYEFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLA 81 (228)
T ss_dssp ----GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34567777777 478999999999999999999883 3456788889999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-ccch-HHHHHHHhhhCCCHHHHHHHHHHHHHHHH
Q 000565 358 KELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK-AVRV-LPRIADCAKNDRNAVLRARCCEYALLVLE 435 (1418)
Q Consensus 358 ~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~-~~~l-lp~l~~~l~~~Kn~~vR~~~~e~L~~il~ 435 (1418)
..+|..|+++++.++|.|++++++++++|+++|..||..|+++++ ..++ ++.+..++ ++|||.+|..|++||..+++
T Consensus 82 ~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 82 RQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGL-KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHT
T ss_pred HHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 6777 66666666 79999999999999999999
Q ss_pred hCCC-Ccccccc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCCHHHHHHHh
Q 000565 436 HWPD-APEIQRS--ADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIIN 500 (1418)
Q Consensus 436 ~~~~-~~~l~~~--~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~ 500 (1418)
.|+. ...+... ++.+++.|.+++.|++++||++|+++||.|+++||++++.++..|||+.||+||
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 9992 2234333 478999999999999999999999999999999999999999999999999986
No 3
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.95 E-value=2.3e-24 Score=269.49 Aligned_cols=697 Identities=15% Similarity=0.130 Sum_probs=431.7
Q ss_pred HHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcch
Q 000565 76 FKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT 155 (1418)
Q Consensus 76 ~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~ 155 (1418)
+...-..+++.....|......+|+...+++..+.+....+.+++.++. .+.-|.|+.-..++..+..++..||....+
T Consensus 57 ~~a~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~ 135 (815)
T KOG1820|consen 57 LNAKNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKA-LLSFKSPKKIAAAVAAVLSLVEEFGKPKVP 135 (815)
T ss_pred hhccceeeccchhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHh-hccccCchhHHHHHHHHHHHHHHhcCCCCc
Confidence 3333344555555556666667788888888888666666777777775 788899999999999999999999998877
Q ss_pred hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCC------
Q 000565 156 LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLP------ 229 (1418)
Q Consensus 156 l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~------ 229 (1418)
. +.+++.+-.+. +..||.++..++++||+|.|..+..++. +.....+..++.+..+.........
T Consensus 136 ~-~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 206 (815)
T KOG1820|consen 136 S-KAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLF-----KASAPGLMGKLGSYQGKSMMSFFNEKRPLLK 206 (815)
T ss_pred c-ccccccCcccc---ccccchhhcccchhhhhhcCCCcCcccc-----hhhhHHHHHHHHhhccccccccccccccccc
Confidence 6 78887777776 6779999999999999999988766664 2223333344444333221110000
Q ss_pred Ccchhhhh----hcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcC---CCCCHHHH
Q 000565 230 NTFAALEI----KTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV---PDKDWSVR 302 (1418)
Q Consensus 230 ~~~~~~~~----r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~---~~~dW~~R 302 (1418)
..+. .+. ......+.++....+ ..+..+.+.+.+....|+ ++++.+.|. .+++|++|
T Consensus 207 ~~~~-~~~~~n~~e~~~~~~~~~~~~~------------~~~~s~~d~~d~l~~~di---~~ki~~~l~t~~~s~~WK~R 270 (815)
T KOG1820|consen 207 SQPQ-DESDPNVKEQLEKPERGLQRSK------------SGFTSPIDNFDLLPRVDI---LSKITKNLETEMLSKKWKDR 270 (815)
T ss_pred cccc-cccCCChhhccccccccccccc------------CCCCCCccccccCchhhh---hhhcChHHHHhhhccchHHH
Confidence 0000 000 000000001100000 000111223333333333 566666653 68999999
Q ss_pred HHHHHHHHHHHhcCCCCc-chHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Q 000565 303 IAAMQRVEGLVLGGAADH-PCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVI 381 (1418)
Q Consensus 303 ~~AL~~L~~ll~~~~~~~-~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~ 381 (1418)
.|||+.+...+.....++ ..+ ...+...+....+|.|.+|+..|..+|..||..||..|.+|+..++|.||..+++
T Consensus 271 ~Eale~l~~~l~e~~~~~~~~~---~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lke 347 (815)
T KOG1820|consen 271 KEALEELVAILEEAKKEIVKGY---TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKE 347 (815)
T ss_pred HHHHHHHHHHHhccccccccCc---chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhh
Confidence 999999999998665222 222 3445566778889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCC
Q 000565 382 TVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADA 461 (1418)
Q Consensus 382 ~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Da 461 (1418)
.+..+++++..|++.++..++..++++.|.+++ .+|||.+|..|..||.++++..++...-...+..+.+.+.+.++|.
T Consensus 348 kk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~ 426 (815)
T KOG1820|consen 348 KKSELRDALLKALDAILNSTPLSKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT 426 (815)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC
Confidence 999999999999999999999999999999999 5999999999999999999999853222234677889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHchhH-HHHHhccCCHHHHHHHhhhcCC-CCcccCCCcccccCCcccccccccccCCCCCCCc
Q 000565 462 MSEVRSTARMCYRMFAKTWPER-SRRLFSSFDPAIQRIINEEDGG-MHRRHASPSVRERGAHLSFTSQTSTASNLSGYGT 539 (1418)
Q Consensus 462 d~eVR~~Ar~a~~~l~~~~p~~-a~~ll~~Ld~~~qk~L~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~g~~~ 539 (1418)
+++||.+|.+++.++++++++. +..++..+++.-.+.+++.... .+. ... +++..
T Consensus 427 ~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~~~-~~~----------------------~~~~~ 483 (815)
T KOG1820|consen 427 DKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLLHF-LAA----------------------PKEKS 483 (815)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccccc-ccc----------------------CCCcC
Confidence 9999999999999999999988 5778999998633333322110 000 000 00000
Q ss_pred cc-ccccccccccCCCCCcCcchhhHHhhhhhhhhhhhhhHHhhhhhhhhhhHHHhhhccccccCCCCCCccccccCCCC
Q 000565 540 SA-IVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGV 618 (1418)
Q Consensus 540 ~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~rs~s~~~~~ 618 (1418)
++ +.-+.+. .++ ......+...
T Consensus 484 ~a~~~~~~~~-------------------------------------~~~------~~~~~~~~~~-------------- 506 (815)
T KOG1820|consen 484 SAPDPQVEKL-------------------------------------KKV------VKVGLSNFSG-------------- 506 (815)
T ss_pred CCCCcccccc-------------------------------------cee------cccccccCCC--------------
Confidence 00 0000000 000 0000000000
Q ss_pred CCCCCCCCCCCCccCCCCCCCccccccccccCCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCccccCcCCcccccc
Q 000565 619 DPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRR 698 (1418)
Q Consensus 619 ~~p~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~ 698 (1418)
+|..+ + ..+|. +.. +.-+.++ .+. .+....+.
T Consensus 507 -~p~~~--~--a~vps----------------------~~s-----------s~~~~~~-~~~---------~~~~~~~~ 538 (815)
T KOG1820|consen 507 -LPKNS--A--ASVPS----------------------KLS-----------SANSSRK-IPE---------AAEAPKLQ 538 (815)
T ss_pred -CCCCc--c--ccCCC----------------------ccc-----------ccccccC-Ccc---------hhhccccc
Confidence 00000 0 00000 000 0000000 000 00000000
Q ss_pred CccccccccchhhhhhhhhhccCCCccccccccccccCCCCCCCCCCCCCccccccccccCCCCCccccccccCcccccc
Q 000565 699 GSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQL 778 (1418)
Q Consensus 699 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 778 (1418)
.+...+ +...++| |-.+. +... ...++..
T Consensus 539 ~~~~~~------------------------~~~~~~~----------------r~~~p-----~~~~---~~~~~~~--- 567 (815)
T KOG1820|consen 539 LSLKEQ------------------------RVVLGTR----------------RKVSP-----KTVV---APVDDKK--- 567 (815)
T ss_pred cccccc------------------------hhhhhhh----------------hccCc-----cccc---cchhhhh---
Confidence 000000 0000000 00000 0000 0001100
Q ss_pred CCCCcccCCCCCHHHHHhcCCCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 000565 779 GEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALST 858 (1418)
Q Consensus 779 ~~~~~~~~~~~~~~~~l~~~~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~ 858 (1418)
+. +... +...+. -.+...|++...+++..++...-...+. ...+...+++|++.+|.|+|..+.-..||.
T Consensus 568 ~~----~~~~--~~~~~~-~~~~~~d~~~~~~~~~~~~r~~~~~~~~---~~~~~~~~l~~~~lr~~~~~~~~~~~~~e~ 637 (815)
T KOG1820|consen 568 EP----SKKF--VPKSLA-KSMKLDDFKQHTAKLEILQRAEAANSKE---YTSIQDLLLEWLVLRFEETNEALLGKVLEL 637 (815)
T ss_pred cc----cccc--cchhhh-hccCccchhhhhhhhhhhhhhhcccccc---cchHHhhhhHHHHHHhhcccHHhhhhhhhh
Confidence 00 0111 111111 1467889999999999999888766552 224778899999999999999999999999
Q ss_pred HHhhhhccCC--Chh--hHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccCCCchhHHHHHH
Q 000565 859 LADIIPSCRK--PFE--SYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIE 934 (1418)
Q Consensus 859 l~~li~~~~~--~~~--~~l~~ll~~l~~klgD~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~ 934 (1418)
+...+...+. ... .--....+-+..++|..++.+++.....-....++.....-.+.+.+.+. .++-..+-+++.
T Consensus 638 l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~-~~~~~~r~~~l~ 716 (815)
T KOG1820|consen 638 LIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALE-LKEREIRSEELL 716 (815)
T ss_pred hhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhcc-ccchhhHHHHhh
Confidence 9998875442 111 11112224444489999999999999999999988888888888888774 455566666666
Q ss_pred HHHHHHhhhhcCCCCCCCchhHHHHHHHHccccccCCHHHHHHHHHHHHHHhccCChHHHHHHHh
Q 000565 935 FAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFIL 999 (1418)
Q Consensus 935 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~ 999 (1418)
.+.+++.. ++. +.......+.-+..|+.+....++.++..++...|...+.+ .+....
T Consensus 717 ~i~~~~~~-----~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 774 (815)
T KOG1820|consen 717 VIKLLFSS-----EGT-SILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDP-SWKISI 774 (815)
T ss_pred hhheeecc-----CCc-chhhhHhhhhcccccccccchhhhhhhhcccccccccccch-HHHHHH
Confidence 65433321 221 22233445556666788999999999999999999755443 544433
No 4
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.80 E-value=1.4e-17 Score=209.21 Aligned_cols=488 Identities=15% Similarity=0.124 Sum_probs=324.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.+|...+.|++||+|.+|++.+...++.....+.....+.+...+.....|.|++|+..++.+|..++..++..|..|..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 35677889999999999999999999986622223334455555566789999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCC---cchhhh
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT---ELTLQR 158 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~---~l~l~k 158 (1418)
.+.|.++++++|.|..+|+.+..++..+++......+.+.++. +++||||+++.+|..|+...+..++.. ...+ +
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e-~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~-~ 413 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILE-ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV-K 413 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH-H
Confidence 9999999999999999999999999999998777888888887 899999999999999999999998842 2334 7
Q ss_pred hhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh-HHHhhhcCCCCHHHHHHHHHHHHHhCCCC--CCCCCCCCc-chh
Q 000565 159 AILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLERIQPQI--RSSDGLPNT-FAA 234 (1418)
Q Consensus 159 ~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~-l~~~L~~~~l~~~~l~~l~~~f~~~~~~~--~~~~~~~~~-~~~ 234 (1418)
.++|.++...+|.+++||.+|.++++.+++++|+. +...|. ++.+.-+..+ .+++.+.. ...++..+. +..
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~--~~~~~~~~~~---~E~~~p~~~~~~~~~~~~~a~~~ 488 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK--DLDKQDIKPK---EEKLKPLLHFLAAPKEKSSAPDP 488 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hhccchhhhh---hhhccccccccccCCCcCCCCCc
Confidence 89999999999999999999999999999999976 566666 4433211112 22222210 000000000 000
Q ss_pred hhhh------------------cccCCCCCCCccccCC----CcccccC-CC-CCccc------ccCCCccccChHHHHH
Q 000565 235 LEIK------------------TASFNPKKSSPKAKSS----TRETSLF-GG-EDITE------KLIEPIKVYSEKELIR 284 (1418)
Q Consensus 235 ~~~r------------------~~s~~~~r~~~~~~s~----~~~~~~~-g~-~~~~~------~~v~~i~i~s~~dl~~ 284 (1418)
...+ +....|.+......+. ..+.+.. .. .+... ...|........+..+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~ 568 (815)
T KOG1820|consen 489 QVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSSRKIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE 568 (815)
T ss_pred cccccceecccccccCCCCCCCccccCCCcccccccccCCcchhhccccccccccchhhhhhhhccCccccccchhhhhc
Confidence 0000 0000011100000000 0000000 00 00000 0111111111111111
Q ss_pred HHHHhhhh----cCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Q 000565 285 EFEKIGST----LVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL 360 (1418)
Q Consensus 285 ~l~~i~~~----l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~l 360 (1418)
.+.++.+. ...-.|.+.-.++++.+.....+....|. ..+..+..++..+..+.|.++.......+....+..
T Consensus 569 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~ 645 (815)
T KOG1820|consen 569 PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYT---SIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTL 645 (815)
T ss_pred ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccc---hHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhc
Confidence 11222211 12346677777777776655544433333 223445667778889999999999999988888877
Q ss_pred hhhHHH----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 361 LGDFEA----CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 361 g~~f~~----~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
+..-.. ....+.|.+...++..+.-+++.-.......++.+++....|.+.+.+ ..++..+|..|..+...++..
T Consensus 646 ~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~ 724 (815)
T KOG1820|consen 646 RLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSS 724 (815)
T ss_pred chhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeecc
Confidence 653222 122345666667777766677776777777778888888899999999 688999999877777666665
Q ss_pred CCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCCHHHHHHHhhhc
Q 000565 437 WPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEED 503 (1418)
Q Consensus 437 ~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~~~~ 503 (1418)
-+.. .+ . .-.....+.-...|.+..+|..+..+.|....+.|+........+.+...-.++..+
T Consensus 725 ~g~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 725 EGTS-IL-K-SLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred CCcc-hh-h-hHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 5443 11 1 112334455578999999999999999999999998877655556666666666644
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.77 E-value=3.5e-18 Score=191.79 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=144.6
Q ss_pred ChhhHHHHHHHHHHHHhhCC----hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHH
Q 000565 1201 SPTSKHGALQQLIKASVAND----HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKL 1276 (1418)
Q Consensus 1201 ~~~~r~~al~~L~~~l~~~~----~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~l 1276 (1418)
+|++|.+||..|+.++..+. ...+.+++..++..+...+.|.++.|...||.++..|+...+..|++|++.++|.|
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 49999999999999999882 23344456666678888898888888888999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHhhcC-hhhH-HHhhhhhccccchhhHHHHHHHHHHHHhhcC--HHHHHh--hhhhhH
Q 000565 1277 LHVTKDAVPKVSNEAEHCLTVVLSQYD-PFRC-LSVIVPLLVTEDEKTLVTCINCLTKLVGRLS--QEELMA--QLPSFL 1350 (1418)
Q Consensus 1277 l~~~~d~~~~V~~aA~~al~~i~~~~~-p~~~-l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~--~~~l~~--~L~~l~ 1350 (1418)
+..++|+.+.|+++|..|+..|+.+++ +.++ +..+.+.+.+++++.+..|++++..+++.|+ ...+.. .++.++
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~ 179 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLV 179 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHH
Confidence 999999999999999999999999999 5666 8899999999999999999999999999999 444544 358899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHHHHHH
Q 000565 1351 PALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1399 (1418)
Q Consensus 1351 p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~kll~ 1399 (1418)
+.+.+++.|++++||++|..|++.+|.++|+...-.+..|++..||.|+
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 9999999999999999999999999999999888888999999999875
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.71 E-value=8.8e-11 Score=143.04 Aligned_cols=421 Identities=16% Similarity=0.152 Sum_probs=260.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
.+++++.++|-..|.-|...|.+.++.....++.....++++.+.+.+.|.|..|+..|+.|++-++.+.++. .+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 5789999999999999999999999876555555556688999999999999999999999999998765442 4444
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh-------HHHHHHhhhhhhcCC------hHHHHHHHHHHHHHHhhc
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-------IIVERAGSYAWTHRS------WRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~-------~v~e~ll~~~~~~Kn------prVr~~~l~~l~~~l~~f 149 (1418)
++..|...+-..|++.|+.+.-.|..+.....|. .|+.++++ -+..-+ .-++.++|..+...+..|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~-~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITP-KLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHH-HHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 4555555544557778999988888888766552 35555553 233322 348999999999999999
Q ss_pred CCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhc---CCC-CHHHHHHHHH---HHHHhCCCC
Q 000565 150 SATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR---HNL-PNSMVKDINA---RLERIQPQI 222 (1418)
Q Consensus 150 g~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~---~~l-~~~~l~~l~~---~f~~~~~~~ 222 (1418)
|.---+++..++..++.-|..+-..||+.|+.+|+.+....+..+...+.. ++| +++++.++.. -+..+--+
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~- 243 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ- 243 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH-
Confidence 975444456777888888899999999999999999999888665444431 122 1122222222 11111000
Q ss_pred CCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcC------CC
Q 000565 223 RSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV------PD 296 (1418)
Q Consensus 223 ~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~------~~ 296 (1418)
.| .+|. .. .+...+... .... .++ ....||.+..=+.++.|. =.
T Consensus 244 ---ag--~r~~--------------~h----~~~ivp~v~-~y~~-----~~e-~~dDELrE~~lQale~fl~rcp~ei~ 293 (1233)
T KOG1824|consen 244 ---AG--HRFG--------------SH----LDKIVPLVA-DYCN-----KIE-EDDDELREYCLQALESFLRRCPKEIL 293 (1233)
T ss_pred ---hc--chhh--------------cc----cchhhHHHH-HHhc-----ccc-cCcHHHHHHHHHHHHHHHHhChhhhc
Confidence 00 0000 00 000000000 0000 000 012333333222222221 02
Q ss_pred CCHHHHHHHHHHHHHHH-hcCCCCcch----HHHHHHHHHHH-HHhhh---ccccHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000565 297 KDWSVRIAAMQRVEGLV-LGGAADHPC----FRGLLKQLVGP-LSTQL---SDRRSSIVKQACHLLCFLSKELLGDFEAC 367 (1418)
Q Consensus 297 ~dW~~R~~AL~~L~~ll-~~~~~~~~~----f~~~L~~L~~~-L~~~l---~D~rs~V~~~A~~~l~~La~~lg~~f~~~ 367 (1418)
.-|.+-.+-+ -..+ ......|+. --+.+.+--+- -.... .|.-+.|.|+|..|+..+...-..-...+
T Consensus 294 p~~pei~~l~---l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~ 370 (1233)
T KOG1824|consen 294 PHVPEIINLC---LSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDF 370 (1233)
T ss_pred ccchHHHHHH---HHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3343322211 1111 111111110 00000000000 00111 25678999999999998765443334456
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc---------------------------cchHHHHHHHhhhCCCH
Q 000565 368 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA---------------------------VRVLPRIADCAKNDRNA 420 (1418)
Q Consensus 368 ~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~---------------------------~~llp~l~~~l~~~Kn~ 420 (1418)
-..+-|.|+.++++.-..++.....+...++.+++. +.++..|...++ +|+.
T Consensus 371 ~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr-~ks~ 449 (1233)
T KOG1824|consen 371 YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR-EKSV 449 (1233)
T ss_pred HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh-hccc
Confidence 778889999999999888888888898888888742 123445555664 6777
Q ss_pred HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChH
Q 000565 421 VLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1418)
Q Consensus 421 ~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~e 464 (1418)
..|..|+..|..++...+.. +..+.+.+++.|...++|.+.-
T Consensus 450 kt~~~cf~lL~eli~~lp~~--l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 450 KTRQGCFLLLTELINVLPGA--LAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchhhHHHHHHHHHHhCcch--hhhcccccchhhhhhcCCccch
Confidence 78999999999999988864 5677888899999899997753
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-10 Score=147.17 Aligned_cols=432 Identities=15% Similarity=0.148 Sum_probs=267.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHh
Q 000565 12 DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL 91 (1418)
Q Consensus 12 ~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llekl 91 (1418)
.-..|..-.+-+.+++... ++. .|.+++..+....++.|...++.|+.+|..+..-.+..+++|+..+.+.+.+.+
T Consensus 93 ~~~vr~k~~dviAeia~~~---l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARND---LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM 168 (1075)
T ss_pred chHHHHHHHHHHHHHHHhc---ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc
Confidence 4555666566666666532 322 688888888889999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhC-hhHH-------HHHHh---hhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhh
Q 000565 92 GDAKQPVRDAARRLLLTLMEVSS-PTII-------VERAG---SYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAI 160 (1418)
Q Consensus 92 gD~k~~Vr~~a~~~L~~l~e~~~-p~~v-------~e~ll---~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~l 160 (1418)
+|....||-.+..++..+++... -... +..++ .......+-..-.++++.|.++++..+.---+....+
T Consensus 169 ~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~i 248 (1075)
T KOG2171|consen 169 TDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQI 248 (1075)
T ss_pred cCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 99999999999999999998753 1111 12121 2244455556667788888887776543111111344
Q ss_pred HHHHHHhcC--CCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhh
Q 000565 161 LPPILQMLN--DPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIK 238 (1418)
Q Consensus 161 l~~l~~lL~--D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r 238 (1418)
|........ +=+..+|..|.++|+.+.+...... +... .+-+.++-.+.....+... | .
T Consensus 249 i~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~-k~~~--~~~~~lv~~~l~~mte~~~-----D-~---------- 309 (1075)
T KOG2171|consen 249 IQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC-KKLA--LLGHTLVPVLLAMMTEEED-----D-D---------- 309 (1075)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh-hhch--hhhccHHHHHHHhcCCccc-----c-h----------
Confidence 444444444 4478999999999999988833221 1111 1111111111111110000 0 0
Q ss_pred cccCCCCCCCccccCCCcccccCCCCCccccc-CCCccc-----------cChHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 000565 239 TASFNPKKSSPKAKSSTRETSLFGGEDITEKL-IEPIKV-----------YSEKELIREFEKIGSTLVPDKDWSVRIAAM 306 (1418)
Q Consensus 239 ~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~-v~~i~i-----------~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL 306 (1418)
.... ..+.++++ -.|..+ ...+.+...+-...+.+..+.+|+.|.+||
T Consensus 310 ------------ew~~--------~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 310 ------------EWSN--------EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred ------------hhcc--------ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0000 00000111 000000 011111111222233345789999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHH-------------------
Q 000565 307 QRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEAC------------------- 367 (1418)
Q Consensus 307 ~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~------------------- 367 (1418)
-.|..+..|.. +...++|..+++..++.+.|..-.|.-.||.+|+.++..+.+.+..+
T Consensus 370 ~Als~i~EGc~---~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 370 LALSVIAEGCS---DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch
Confidence 99998887543 23445788899999999999999999999999999888777555443
Q ss_pred -------------------------HHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHhCC------ccchHHHHHHHhh
Q 000565 368 -------------------------AEMFIPVLFK-LVVITVLVIAESSDNCIKTMLRNCK------AVRVLPRIADCAK 415 (1418)
Q Consensus 368 -------------------------~~~llp~Ll~-~~~~~~~vi~~sa~~al~~i~~~~~------~~~llp~l~~~l~ 415 (1418)
++.+|..++. +..+.++.+++.+..+|.++....+ ++++||.+...+.
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 3333332222 2233456666777777777766654 2678887777764
Q ss_pred hCC---CHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHchhHHHHHhc
Q 000565 416 NDR---NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCC---VADAMSEVRSTARMCYRMFAKTWPERSRRLFS 489 (1418)
Q Consensus 416 ~~K---n~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~---l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~ 489 (1418)
+-. ...+|..+.|++..+....+..+ .......+.+.+..+ ..|.|.-.|.+...+|..+.+++++....++.
T Consensus 527 n~~~~d~r~LrgktmEcisli~~AVGke~-F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~ 605 (1075)
T KOG2171|consen 527 NADDKDLRELRGKTMECLSLIARAVGKEK-FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLP 605 (1075)
T ss_pred CCCchhhHHHHhhHHHHHHHHHHHhhhhh-hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHH
Confidence 322 25567777788777777665432 112233455555554 56666667888888888888887777766654
Q ss_pred c
Q 000565 490 S 490 (1418)
Q Consensus 490 ~ 490 (1418)
.
T Consensus 606 ~ 606 (1075)
T KOG2171|consen 606 V 606 (1075)
T ss_pred H
Confidence 3
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.62 E-value=5.5e-09 Score=127.84 Aligned_cols=176 Identities=17% Similarity=0.237 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhc------------------CCcHHHH
Q 000565 1227 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK------------------DAVPKVS 1288 (1418)
Q Consensus 1227 ~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~------------------d~~~~V~ 1288 (1418)
..++-+.-++..+.|++..||..||.++..-+.+.++.+..-+..+||.|.+..+ |.+-.+|
T Consensus 1004 ~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~R 1083 (1233)
T KOG1824|consen 1004 LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLR 1083 (1233)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHH
Confidence 3444444777888899999999999999999999888888888889998886543 6778899
Q ss_pred HHHHHHHHHHHhh----cChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC----
Q 000565 1289 NEAEHCLTVVLSQ----YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ---- 1360 (1418)
Q Consensus 1289 ~aA~~al~~i~~~----~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~---- 1360 (1418)
.+|=+|+-+++.. .++-.++.++..+|.+. |-+++.++-|+.+|+.-++ ..+...+..+++.|.+-+...
T Consensus 1084 KaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcP-s~VlqrlD~l~EpLr~t~~~k~k~~ 1161 (1233)
T KOG1824|consen 1084 KAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCP-SAVLQRLDRLVEPLRKTCTLKVKAN 1161 (1233)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999988865 56667888777788655 8889999999999995555 777788999999998876543
Q ss_pred --------CHHHHHHHHHHHHHHHHHhhh-cccccccccChHH-----HHHHHHHHHhh
Q 000565 1361 --------SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ-----LRLVTIYANRI 1405 (1418)
Q Consensus 1361 --------~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~-----~kll~~yi~r~ 1405 (1418)
.-|..++|..++.++ ..+++ +=-|.+..+..+- +..+=.+|++-
T Consensus 1162 svKqE~ek~~eLkRSAlRav~~L-~~ip~v~~np~~~df~sqik~~pel~~~fe~I~ke 1219 (1233)
T KOG1824|consen 1162 SVKQEFEKQDELKRSALRAVAAL-LTIPEVEKNPQFSDFESQIKSNPELAAIFESIQKE 1219 (1233)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHH-hcccccccChHHHHHHHHhhcChhHHHHHHHHHHH
Confidence 346677777776666 33432 3345555554443 33444455553
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.1e-11 Score=156.17 Aligned_cols=195 Identities=16% Similarity=0.224 Sum_probs=154.4
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
|+.+-+-|.|.+|++|.+|+..|..+.+...+.+ ...+..+++.+.++++|+++.|+.+|+.+++++...+...++++.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 3556778899999999999999999988765544 246788888999999999999999999999999999988887654
Q ss_pred h-hhHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHhChh-------HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC
Q 000565 81 N-ALVPAVVERLGDAKQ-PVRDAARRLLLTLMEVSSPT-------IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 81 ~-~ilp~LleklgD~k~-~Vr~~a~~~L~~l~e~~~p~-------~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
. .+.|.|+..+-|... .|...|..+|..+.|.+... .++++.+.....+.+++|++.++..|.++...-+.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 4 555578887776544 78888999999999875443 34554444455677789999999999998887666
Q ss_pred CcchhhhhhHHHHHHhcCCCC----hhHHHHHHHHHHHHHHhcCh-hHHH
Q 000565 152 TELTLQRAILPPILQMLNDPN----PGVREAAILCIEEMYTYAGP-QFRD 196 (1418)
Q Consensus 152 ~~l~l~k~ll~~l~~lL~D~~----~~VR~aA~~~L~~l~~~~G~-~l~~ 196 (1418)
.-+++.+.++|.+.++|+..+ .++|-..++|+..+-..+|+ .|..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~ 558 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLP 558 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhH
Confidence 556666788999999887655 56788889999999999994 3433
No 10
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5e-14 Score=167.64 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=171.0
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHhccccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVM 1265 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~-vr~~aL~~L~~l~~~~~~~~ 1265 (1418)
+.+++.++-... +..+|..|...+..+++..+...+.+ ..++..|.+.+.|++.. .||.++......+.++|..|
T Consensus 135 ~l~~l~~ll~~~--~~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 135 VLELLLELLTST--KIAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred HHHHHHHHhccc--cHHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 444555544443 35799999999999999887666542 34677899999998766 77788899999999999999
Q ss_pred cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---ccchhhHHHHHHHHHHHHhhcCHHHH
Q 000565 1266 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQEEL 1342 (1418)
Q Consensus 1266 ~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~~~l 1342 (1418)
++|+..++|.++...+|..++||++|..|+++|..++++..+-.++.+.|. ..+|+++.+++++++-+. .+.+.+|
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~-~~ap~qL 289 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMA-DCAPKQL 289 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHH-HhchHHH
Confidence 999999999999999999999999999999999999999875555555553 459999999999999777 5666999
Q ss_pred HhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 000565 1343 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERL 1390 (1418)
Q Consensus 1343 ~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L 1390 (1418)
..++|.++|.|.+-|||++++|||++..||..++.++.+ +|.+|++.|
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L 338 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL 338 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 899998865
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.6e-10 Score=136.37 Aligned_cols=346 Identities=15% Similarity=0.170 Sum_probs=229.0
Q ss_pred hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHh-----------ChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc
Q 000565 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVS-----------SPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 81 ~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~-----------~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f 149 (1418)
.+++|.|.+.|........|-|..+|..+||-. ....++.++++ .++|.+|++|..++.++...+-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~-f~~h~spkiRs~A~~cvNq~i~~- 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQ-FFKHPSPKIRSHAVGCVNQFIII- 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHH-HHhCCChhHHHHHHhhhhheeec-
Confidence 678999999887777678999999999999841 12456777777 89999999999999888654421
Q ss_pred CCCc--chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCC
Q 000565 150 SATE--LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDG 227 (1418)
Q Consensus 150 g~~~--l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~ 227 (1418)
..+. ..+ +.|+..+..+.+|.+++||+.-+..++-+...-.+.+.++|. ..++.+..+ ++.. +.
T Consensus 205 ~~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~------~IveyML~~---tqd~----dE 270 (885)
T KOG2023|consen 205 QTQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD------NIVEYMLQR---TQDV----DE 270 (885)
T ss_pred CcHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH------HHHHHHHHH---ccCc----ch
Confidence 1122 224 789999999999999999999999999998877777777775 333333322 1110 00
Q ss_pred CCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 000565 228 LPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQ 307 (1418)
Q Consensus 228 ~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~ 307 (1418)
. .+= ++..+= -...+.++ -..-|...+++|.+.|...-.+.+--..|.
T Consensus 271 --~--VAL---------------------EACEFw-la~aeqpi------~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 271 --N--VAL---------------------EACEFW-LALAEQPI------CKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred --h--HHH---------------------HHHHHH-HHHhcCcC------cHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 0 000 000000 00001111 224466778999999877766655444332
Q ss_pred HHHHHHhcCCCCc--chHHHHHHHHHHHHH--hhh--------------------ccccHHHHHHHHHHHHHHHHHhhhh
Q 000565 308 RVEGLVLGGAADH--PCFRGLLKQLVGPLS--TQL--------------------SDRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 308 ~L~~ll~~~~~~~--~~f~~~L~~L~~~L~--~~l--------------------~D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
. .+..++ ++=- .++-+-+- +.. ....+++.+....+|..|+..+|.+
T Consensus 319 ~------~~eeD~~vpDre---eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e 389 (885)
T KOG2023|consen 319 K------NNEEDESVPDRE---EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE 389 (885)
T ss_pred c------CccccccCCchh---hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH
Confidence 2 111110 1100 01111110 000 0123678888889999999999875
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC------CccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhC
Q 000565 364 FEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC------KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHW 437 (1418)
Q Consensus 364 f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~------~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~ 437 (1418)
....++|-|-+.+....=++++++..|+.+|.+-| +.+.++|+++..+ ++|.|-||..+|=.|.+...-.
T Consensus 390 ---lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L-~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 390 ---LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLL-DDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred ---HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHh-ccCccceeeeeeeeHhhhhhhH
Confidence 47788999988998888889999999999999988 3478999999999 8999999998775544322211
Q ss_pred CCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHh
Q 000565 438 PDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLF 488 (1418)
Q Consensus 438 ~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll 488 (1418)
-.. ..+.++..+..-+.+.+-|.+..|.++|..||.+|..--+++.-.++
T Consensus 466 ~~~-~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l 515 (885)
T KOG2023|consen 466 VQD-SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL 515 (885)
T ss_pred hcC-ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 111 12234444555667788999999999999999999887666654433
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.1e-08 Score=114.61 Aligned_cols=725 Identities=15% Similarity=0.158 Sum_probs=413.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHH-----
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFK----- 77 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~----- 77 (1418)
+++..+.+.+--.|--...-+..++...+. ..+..++..|...+........++|+.+|..+++-..+.+.
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~----~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGL----QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeeccccc----ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 456666666666666665555555554321 23567777777778777888999999999999988666554
Q ss_pred HHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH------hChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC
Q 000565 78 LHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV------SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 78 ~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~------~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
+-++.++|-+++-+....+.+|..|..|+-.++-. ...+.-++.++. .-++.+|.||..+|..+.-+++....
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 46778999999999999999999999999887642 122333444443 34788999999999999988875443
Q ss_pred Ccch-hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcC--hhHHHhhhcCCCCHHHHHHHH-HHHHHhCCCCCCCCC
Q 000565 152 TELT-LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG--PQFRDELHRHNLPNSMVKDIN-ARLERIQPQIRSSDG 227 (1418)
Q Consensus 152 ~~l~-l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G--~~l~~~L~~~~l~~~~l~~l~-~~f~~~~~~~~~~~~ 227 (1418)
+-.+ + ..++.......+|.|.+|--.|++....+...-- ..+.++|. .+-|.++.-+. ...+.+.-.....|.
T Consensus 249 kl~phl-~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~--kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 249 KLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD--KLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred hcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH--HHHHHHHccCccccccHHHhcCccccc
Confidence 3222 3 5677777888899999999999999888775432 23455554 33333222110 000000000000000
Q ss_pred C-CCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCccc------ccCCCccc--cChHHHH--------HHHHHhh
Q 000565 228 L-PNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITE------KLIEPIKV--YSEKELI--------REFEKIG 290 (1418)
Q Consensus 228 ~-~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~------~~v~~i~i--~s~~dl~--------~~l~~i~ 290 (1418)
. +.+ -...|| .-...+..+..... ...++++ +....+++ -|...|. +.+..++
T Consensus 326 ~vpDr--eeDIkP-----Rfhksk~~~~~~~~---~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 326 SVPDR--EEDIKP-----RFHKSKEHGNGEDA---DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred cCCch--hhhccc-----hhhhchhccCcccc---ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 0 000 000010 00000000000000 0011111 11112222 1222111 1134444
Q ss_pred hhc---CCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh-HHH
Q 000565 291 STL---VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD-FEA 366 (1418)
Q Consensus 291 ~~l---~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~-f~~ 366 (1418)
+.| ..+.+|++|..++-.+.++..|.- ..|+++|.+|++.|...+.|.---|.+-+|=||+..+.-.-.+ =+.
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~ 472 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE 472 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh
Confidence 444 257899999999999999998764 2466778899999999999988888888999999887754332 335
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHhh--hCCCHHHHHHHHHHHHHHHHhCC
Q 000565 367 CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA------VRVLPRIADCAK--NDRNAVLRARCCEYALLVLEHWP 438 (1418)
Q Consensus 367 ~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l~--~~Kn~~vR~~~~e~L~~il~~~~ 438 (1418)
|+..++..|++.+-|+||-+.++|..|..++.+..+. ..++..+..++. ++||-.+-. ..++.+....+
T Consensus 473 ~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg 549 (885)
T KOG2023|consen 473 YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADSVG 549 (885)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHHHH
Confidence 7888889999999999999999999999998887764 233333333332 345544433 33444444443
Q ss_pred CCccc-cccHHHHHH-HHHH--HhcCCChHHHHHHHHHHHHHHHH----chhHHHHHhccCCHHHHHHHhhhcCCCCccc
Q 000565 439 DAPEI-QRSADLYED-LIRC--CVADAMSEVRSTARMCYRMFAKT----WPERSRRLFSSFDPAIQRIINEEDGGMHRRH 510 (1418)
Q Consensus 439 ~~~~l-~~~~~~l~~-~l~~--~l~Dad~eVR~~Ar~a~~~l~~~----~p~~a~~ll~~Ld~~~qk~L~~~~~~~~~~~ 510 (1418)
.+ .. ..+++.+.+ .|.| .+.|.|+|+==- -+||..+... |-.-+..+|+..=.-.+|.++.. +.++
T Consensus 550 ~~-Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL-LEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~-~~~~--- 623 (885)
T KOG2023|consen 550 HA-LNKPAYIQILMPPLIEKWELLSDSDKDLFPL-LECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL-AKVQ--- 623 (885)
T ss_pred Hh-cCcHHHHHHhccHHHHHHHhcCcccchHHHH-HHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH-Hhcc---
Confidence 32 11 123444443 3443 789999885221 2333332222 21112222322222333333321 1110
Q ss_pred CCCcccccCCcccccccccccCCCCCCCcccccccccccccCCCCCcCcchhhHHhhhhhhhhhhhhhHHhhhhhhhhhh
Q 000565 511 ASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSA 590 (1418)
Q Consensus 511 ~~~s~~~~~~~~s~~~~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~a~~~~~~a 590 (1418)
.+. . +.+.||---+. +=+|
T Consensus 624 -~~~---~-----------------------~~~pdkdfiI~------sLDL---------------------------- 642 (885)
T KOG2023|consen 624 -QDP---T-----------------------VEAPDKDFIIV------SLDL---------------------------- 642 (885)
T ss_pred -CCc---c-----------------------ccCCCcceEEE------eHHH----------------------------
Confidence 000 0 00001100000 0000
Q ss_pred HHHhhhccccccCCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCCCccccccccccCCCCCCCCCCCCccchhhhhh
Q 000565 591 IESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQI 670 (1418)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~rs~s~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 670 (1418)
.+|. .. |
T Consensus 643 ----~SGL---------------------------------------------ae-------------g----------- 649 (885)
T KOG2023|consen 643 ----LSGL---------------------------------------------AE-------------G----------- 649 (885)
T ss_pred ----HhHH---------------------------------------------HH-------------H-----------
Confidence 0000 00 0
Q ss_pred ccccCCCCCCCCCCccccCcCCccccccCccccccccchhhhhhhhhhccCCCccccccccccccCCCCCCCCCCCCCcc
Q 000565 671 QASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNF 750 (1418)
Q Consensus 671 ~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 750 (1418)
++ + |.+
T Consensus 650 --------Lg-----------------------------------------~-~ie------------------------ 655 (885)
T KOG2023|consen 650 --------LG-----------------------------------------S-HIE------------------------ 655 (885)
T ss_pred --------hh-----------------------------------------h-chH------------------------
Confidence 00 0 000
Q ss_pred ccccccccCCCCCccccccccCccccccCCCCcccCCCCCHHHHHhcCCCCCCChhhHHHHHHHHHHHHhcCCCchHHHH
Q 000565 751 QRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVI 830 (1418)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~ 830 (1418)
+++ ...++.+++-.| +.+.-=-.|..+|.-|..+.+.-.. .|.
T Consensus 656 --~Lv-------------------------------a~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~---~v~ 698 (885)
T KOG2023|consen 656 --PLV-------------------------------AQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFE---HVI 698 (885)
T ss_pred --HHh-------------------------------hhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHH---hcc
Confidence 000 000122333322 2344445677788888877766433 466
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHHhhCCCch--hhHHHHHHHHHHHHhcCC
Q 000565 831 QNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKE--LVRQPCSTTLDIVSKTYS 908 (1418)
Q Consensus 831 ~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~l~~klgD~k~--svr~~a~~~L~~~~~~~~ 908 (1418)
+++..++..+-.-|.-.|.-|.-.+.=.++++...++...++|+..+|-.|+.-++-.+. ++-+...-++-.+ ..+-
T Consensus 699 p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrL-g~~~ 777 (885)
T KOG2023|consen 699 PNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRL-GYIC 777 (885)
T ss_pred chHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhh-hccC
Confidence 788888888887777788889999999999999999999999999999999988763221 1111111111111 2344
Q ss_pred chhhh-------HHHHHHhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCchhHHHHHHHHccccccCCHHHHHHHHHH
Q 000565 909 VDSLL-------PALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITC 981 (1418)
Q Consensus 909 ~~~~l-------~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~ 981 (1418)
|+.+. ..||..+..-.....|..+..=+...+ .++|.+.. .....+...|+.|...+ .++|..-.+.
T Consensus 778 Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi---~vNp~~vv--~~~~f~c~aiAsw~np~-~~l~~~f~ki 851 (885)
T KOG2023|consen 778 PEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMI---NVNPSGVV--SSFIFICDAIASWSNPE-DDLRDEFYKI 851 (885)
T ss_pred HHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHhe---eeCchhhh--hhhHHHHHHHhcccChH-HHHHHHHHHH
Confidence 44444 445554432234566776655554433 56777754 34455667778888555 7888888888
Q ss_pred HHHHhccCChHHHHHHHhhCCHHHHHHH
Q 000565 982 IISVYTHYDSTAVLNFILSLSVEEQNSL 1009 (1418)
Q Consensus 982 l~aly~~~~~~~~~~~~~~l~~~~~~~l 1009 (1418)
|..--..+|...-.+++..+|+..++.|
T Consensus 852 L~g~k~qvg~~nW~~~~~qf~P~~~erl 879 (885)
T KOG2023|consen 852 LQGFKNQVGKINWQRFSEQFPPPLKERL 879 (885)
T ss_pred HHHHHHHhhhhhHHHHhhcCChhHHHHH
Confidence 8776666766666677778888888775
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-09 Score=131.01 Aligned_cols=398 Identities=16% Similarity=0.216 Sum_probs=273.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchH-HHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFK-VSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~-V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
+.+.+.+...+..+|..+.-.+..++...... ...=..|++.+.+.+.|.|.. ..+.++.++..+...+|..+++|+
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi 214 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI 214 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH
Confidence 45667777888999999999998888765422 112246788888888887555 455688888889999999999999
Q ss_pred hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHH---HHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchh-
Q 000565 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTII---VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL- 156 (1418)
Q Consensus 81 ~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v---~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l- 156 (1418)
..++|.++.++||.-..||+++.++...++.++++..| +..++. ++....|+.+..+++.+..+... .+..+.+
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~-~l~~~kWrtK~aslellg~m~~~-ap~qLs~~ 292 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG-SLLEAKWRTKMASLELLGAMADC-APKQLSLC 292 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH-HHHHHhhhhHHHHHHHHHHHHHh-chHHHHHH
Confidence 99999999999999999999999999999998877644 333444 44445899999999988854432 3332221
Q ss_pred hhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh-HHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 000565 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAAL 235 (1418)
Q Consensus 157 ~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~-l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~ 235 (1418)
.+.++|.+..-|-|+.++||+++++++..+...+... +..++. ..++.+ . + |
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip------~Lld~l----~---d-----p--------- 345 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP------TLLDAL----A---D-----P--------- 345 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH------HHHHHh----c---C-----c---------
Confidence 1678999999999999999999999999988776643 222222 111111 1 0 0
Q ss_pred hhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhh-hcCCCCCHHHHHHHHHHHHHHHh
Q 000565 236 EIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGS-TLVPDKDWSVRIAAMQRVEGLVL 314 (1418)
Q Consensus 236 ~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~-~l~~~~dW~~R~~AL~~L~~ll~ 314 (1418)
.+.+ .+.++.+.. .|..
T Consensus 346 ---------~~~~----------------------------------~e~~~~L~~ttFV~------------------- 363 (569)
T KOG1242|consen 346 ---------SCYT----------------------------------PECLDSLGATTFVA------------------- 363 (569)
T ss_pred ---------ccch----------------------------------HHHHHhhcceeeee-------------------
Confidence 0000 001111111 0110
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 000565 315 GGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL--LGDFEACAEMFIPVLFKLVVITVLVIAESSDN 392 (1418)
Q Consensus 315 ~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~l--g~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~ 392 (1418)
..+-+. |.-+++.|...+.+..+..-+.++..+..++.-. .....+|+..++|.|-+.+.+.-.-+|.-+..
T Consensus 364 --~V~~ps----LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaar 437 (569)
T KOG1242|consen 364 --EVDAPS----LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAAR 437 (569)
T ss_pred --eecchh----HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHH
Confidence 001112 3445555556666666677788999999998877 56688999999999999998887789999999
Q ss_pred HHHHHHHhCCc---cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHh-cCCChHHHHH
Q 000565 393 CIKTMLRNCKA---VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCV-ADAMSEVRST 468 (1418)
Q Consensus 393 al~~i~~~~~~---~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l-~Dad~eVR~~ 468 (1418)
+|..+++..+. +.++|.+.+.++.+|.-.-|..+++.|..++...+.+. . .+.+.+.+.... .+.++-+|..
T Consensus 438 AL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~---~~~~~~~~a~~~~~~~~~~~~dg 513 (569)
T KOG1242|consen 438 ALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-V---EDILPEILANASSVLIDERIRDG 513 (569)
T ss_pred HHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-H---HHHHHHHHHHHhhccchhhhccC
Confidence 99999987764 78999999999878888888889999999888876641 2 233333333332 3333345555
Q ss_pred HHHHHHHHHHHchhHHHHHhccCCHHHHHHHhhh
Q 000565 469 ARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEE 502 (1418)
Q Consensus 469 Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~~~ 502 (1418)
=...|..+-..++.+....+...=+...|.+.+.
T Consensus 514 ~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 514 VIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred eeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 4444444455666666665544445555555543
No 14
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.29 E-value=3.9e-09 Score=132.88 Aligned_cols=392 Identities=18% Similarity=0.227 Sum_probs=257.7
Q ss_pred hhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh-----HHHHHHh
Q 000565 49 LLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-----IIVERAG 123 (1418)
Q Consensus 49 ~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~-----~v~e~ll 123 (1418)
..+|.++.|...+-.=++.++..++. ......++|.+++-..|.++.||+.|.+.+..+.+....+ .+.+.++
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLV 322 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence 34667777777777777777666554 3455677888888889999999999999999999987666 3444555
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCC
Q 000565 124 SYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNL 203 (1418)
Q Consensus 124 ~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l 203 (1418)
. ..++++|++|..+..++..+...||..... ...++.+..+++|...++|.++..-..++...........+....+
T Consensus 323 ~-~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 323 Q-AVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred H-HhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 4 788999999999999999999999984432 3678889999999999999999888888877766432222221111
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCccccc-CCC-CCcc--------------
Q 000565 204 PNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSL-FGG-EDIT-------------- 267 (1418)
Q Consensus 204 ~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~-~g~-~~~~-------------- 267 (1418)
+-.+............. ..+.. .....|.-+ ...+.+--.+. .+. .+..
T Consensus 400 ----lp~~~~lv~d~~~~vr~-------a~a~~--~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 400 ----LPEVQVLVLDNALHVRS-------ALASV--ITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred ----hHHHHHHHhcccchHHH-------HHhcc--ccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 11121111100000000 00000 000000000 00000000000 000 0000
Q ss_pred --cccCCCccccChHHHHHHHHHhhhh---cCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhcccc
Q 000565 268 --EKLIEPIKVYSEKELIREFEKIGST---LVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRR 342 (1418)
Q Consensus 268 --~~~v~~i~i~s~~dl~~~l~~i~~~---l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~r 342 (1418)
..++..+... .+..++. +..+..|+.|.+.++.+..++.... .+-|.+.+..++..+ +.|.=
T Consensus 465 ~~v~~v~g~~~~--------s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~---l~d~v 531 (759)
T KOG0211|consen 465 EEVNDVIGISTV--------SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTW---LPDHV 531 (759)
T ss_pred HhccCcccchhh--------hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhh---hhhhH
Confidence 0011111111 1122222 2345689999999999998875221 122434455555443 44545
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc----cchHHHHHHHhhhCC
Q 000565 343 SSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA----VRVLPRIADCAKNDR 418 (1418)
Q Consensus 343 s~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~----~~llp~l~~~l~~~K 418 (1418)
..+...|..++..++..+|..| +...++|.++....+.+...|.....||..+++.+|- ..++|.+.... .|.
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~-~D~ 608 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV-KDP 608 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc-cCC
Confidence 5666778899999999999878 7888999999999998899999999999999999985 57888888766 799
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Q 000565 419 NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTW 480 (1418)
Q Consensus 419 n~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~ 480 (1418)
+|+||..+++.|..++...... ..+ ..+.+++..+..|.|.+||..|..++..+..+.
T Consensus 609 vanVR~nvak~L~~i~~~L~~~-~~~---~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 609 VANVRINVAKHLPKILKLLDES-VRD---EEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred chhhhhhHHHHHHHHHhhcchH-HHH---HHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 9999999999999999887653 222 345666667777999999999999999877663
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.24 E-value=6.4e-06 Score=112.99 Aligned_cols=187 Identities=18% Similarity=0.238 Sum_probs=132.0
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1265 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f-~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~ 1265 (1418)
|..+++.|...+ .+.+++|...|..+...+......... ...+..|.+.|++.+..+++.|+..|..|++.....-
T Consensus 653 IpPLV~LLss~~---~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 653 INPCIKLLTNNT---EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence 455666665543 257888888888887755443322111 2356779999999999999999999999998764442
Q ss_pred cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh-------HHHhh---hhhccccch--hhHHHHHHHHHHH
Q 000565 1266 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVI---VPLLVTEDE--KTLVTCINCLTKL 1333 (1418)
Q Consensus 1266 ~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~-------~l~~l---~~~l~s~~~--~~~~~alk~l~~l 1333 (1418)
+--.+-.++.|++.+++...++++.|..++..++.+.+..+ +..++ ..+|+..+. .....+++.|..+
T Consensus 730 ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l 809 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALL 809 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 22234568999999999999999999999999999988765 22333 344444333 3445588888888
Q ss_pred Hhhc-----C--HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1334 VGRL-----S--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1334 v~~~-----~--~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
...- . +=..--..|.-+..|++|+.|.+++|-..|+..+--+|
T Consensus 810 ~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 810 ARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred HhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 7531 1 11111234667788999999999999999999999888
No 16
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.5e-10 Score=127.28 Aligned_cols=181 Identities=13% Similarity=0.213 Sum_probs=154.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPV 374 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~ 374 (1418)
.++||...+++|..|+.|.. ++.+.+...|+.++..+.+.++++||+|.+.||.|++.|++.+++.++..++.++-.
T Consensus 98 ~s~dW~~~vdgLn~irrLs~---fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 98 SSDDWEDKVDGLNSIRRLSE---FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred chHHHHHHhhhHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999985 333456667888999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Q 000565 375 LFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLI 454 (1418)
Q Consensus 375 Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l 454 (1418)
|+.+....|.+||+.|..+|.+|+.++.+.++++.|+.++ .+.++.+|+..+.++-.+....+.......+...+...+
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~ 253 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAA 253 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH-hhhchhhhhhhhccccccceeccccchhhHhHHHHHHHH
Confidence 9999999999999999999999999999999999999998 578999999988888777777654322223344566777
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 455 RCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 455 ~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
..-..|.=+++|++|+-.+..+...
T Consensus 254 ~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 254 QEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred HhhhcccccccccchhHHHHhHHHH
Confidence 7788999999999998777655444
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.7e-08 Score=116.91 Aligned_cols=419 Identities=16% Similarity=0.190 Sum_probs=259.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHH-------hhhh
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVT-SLVDCCLDLLKDNNFKVSQGALQSLASAAVL-------SGEH 75 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~-~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~-------l~~~ 75 (1418)
++|.-.+.|-+.|.+|++.|.++..-.+..+ ..++. .++......++..|-.|+..|++++..+++. .++.
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m-~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFM-EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999998766544 23333 3566556788899999999999999977644 1222
Q ss_pred H------------HHHHhhhHHHHHHHhCCCCh-------HHHHHHHHHHHHHHHHhChhHHHHHHh---hhhhhcCChH
Q 000565 76 F------------KLHFNALVPAVVERLGDAKQ-------PVRDAARRLLLTLMEVSSPTIIVERAG---SYAWTHRSWR 133 (1418)
Q Consensus 76 ~------------~~~~~~ilp~LleklgD~k~-------~Vr~~a~~~L~~l~e~~~p~~v~e~ll---~~~~~~Knpr 133 (1418)
+ +..+..++|.|++.|....+ .+-.+|--||+.+.+.+..+ ++..++ +..+++.+|+
T Consensus 301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWR 379 (859)
T ss_pred hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchh
Confidence 2 23455899999998843211 25667777888888876543 444554 3467789999
Q ss_pred HHHHHHHHHHHHHhhcCCCcchh---hhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHH
Q 000565 134 VREEFARTVTSAIGLFSATELTL---QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKD 210 (1418)
Q Consensus 134 Vr~~~l~~l~~~l~~fg~~~l~l---~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~ 210 (1418)
-|+...-.+.++++ |.....+ ....+|.++.++.|+.--||+.+..+|+.+..++.+...+... .+.++..
T Consensus 380 ~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~----l~~~l~~ 453 (859)
T KOG1241|consen 380 NREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL----LQSKLSA 453 (859)
T ss_pred hhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh----hhHHHHH
Confidence 99999999998876 5543322 2456888899999999999999999999999998754322111 1223333
Q ss_pred HHHHHHHhCCCCCCCCCC-CCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHh
Q 000565 211 INARLERIQPQIRSSDGL-PNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKI 289 (1418)
Q Consensus 211 l~~~f~~~~~~~~~~~~~-~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i 289 (1418)
+...+.. . |..... ...|.. . ..+...+..+ . |. . ++.+ .-.+..++.+
T Consensus 454 l~~gL~D---e-Prva~N~CWAf~~--L-------aea~~eA~~s-----~-~q----t---~~~t----~~y~~ii~~L 503 (859)
T KOG1241|consen 454 LLEGLND---E-PRVASNVCWAFIS--L-------AEAAYEAAVS-----N-GQ----T---DPAT----PFYEAIIGSL 503 (859)
T ss_pred HHHHhhh---C-chHHHHHHHHHHH--H-------HHHHHHhccC-----C-CC----C---Cccc----hhHHHHHHHH
Confidence 3332221 1 100000 000000 0 0000000000 0 00 0 0111 1122334444
Q ss_pred hhhcC--CCCCHHHHHHHHHHHHHHHhcCCCC-cchHHH----HHHHHHHHHHhhhc---cccH--HHHHHHHHHHHHHH
Q 000565 290 GSTLV--PDKDWSVRIAAMQRVEGLVLGGAAD-HPCFRG----LLKQLVGPLSTQLS---DRRS--SIVKQACHLLCFLS 357 (1418)
Q Consensus 290 ~~~l~--~~~dW~~R~~AL~~L~~ll~~~~~~-~~~f~~----~L~~L~~~L~~~l~---D~rs--~V~~~A~~~l~~La 357 (1418)
+..-. +..+-.-|..|.+.|..+++....+ |+.... .+..|-..+..++. |.-. -|...-|.+|+.+-
T Consensus 504 l~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~ 583 (859)
T KOG1241|consen 504 LKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSII 583 (859)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHH
Confidence 44332 2367889999999999999865433 332111 12223333321121 2111 24455689999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHhhhCCCHHHHHHHHHHH
Q 000565 358 KELLGDFEACAEMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNCKA------VRVLPRIADCAKNDRNAVLRARCCEYA 430 (1418)
Q Consensus 358 ~~lg~~f~~~~~~llp~Ll~~~~~-~~~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l~~~Kn~~vR~~~~e~L 430 (1418)
..++.++....+.+|..++..+.. ...++-+.|..++.+++++.+. +.+.|++..++++--.-.|-..+..+.
T Consensus 584 rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglV 663 (859)
T KOG1241|consen 584 RKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLV 663 (859)
T ss_pred HHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999987 3456888999999999999974 578888888884332233333334555
Q ss_pred HHHHHhCCCCccccccHHHHHHHHHHHhcCCC
Q 000565 431 LLVLEHWPDAPEIQRSADLYEDLIRCCVADAM 462 (1418)
Q Consensus 431 ~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad 462 (1418)
+.+.+...+. +-.+-+.+...|..+|...+
T Consensus 664 gdl~raL~~~--i~py~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 664 GDLARALEDD--ILPYCDELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHHhh--hhhHHHHHHHHHHHHccCcc
Confidence 5566666543 22344566666667776654
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.9e-07 Score=109.63 Aligned_cols=380 Identities=15% Similarity=0.128 Sum_probs=264.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~-~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.+...|.||-+..|++|..+|.+++++.....+...+.++++.+. ......+..-..+++-.+.+.+-.+|..-..|..
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 567789999999999999999999987655444555778888654 4556566666668888888888888877667999
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCh------hHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc---CCC
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP------TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF---SAT 152 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p------~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f---g~~ 152 (1418)
.++|+++..++|+...||-.|.+.|..+++.... +.+++.+.+ ...+...-||.+ .+.+.++++.. ...
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k-lsaDsd~~V~~~-aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK-LSADSDQNVRGG-AELLDRLIKDIVTESAS 161 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH-HhcCCccccccH-HHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999987422 355666654 444544555542 23333333332 223
Q ss_pred cchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcc
Q 000565 153 ELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTF 232 (1418)
Q Consensus 153 ~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~ 232 (1418)
.+++ ..|+|.+-.-+-+.|+.+|..-..-+..++..-+-.+..++. ..+.-+..-+. |.+
T Consensus 162 tFsL-~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~------~~ldGLf~~Ls---------D~s---- 221 (675)
T KOG0212|consen 162 TFSL-PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP------SLLDGLFNMLS---------DSS---- 221 (675)
T ss_pred ccCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch------HHHHHHHHHhc---------CCc----
Confidence 5677 789999999999999999998888887777666655555554 22322222111 100
Q ss_pred hhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHH-HHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 000565 233 AALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIR-EFEKIGSTLVPDKDWSVRIAAMQRVEG 311 (1418)
Q Consensus 233 ~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~-~l~~i~~~l~~~~dW~~R~~AL~~L~~ 311 (1418)
+.+ +++.+ .+..++.++ +
T Consensus 222 ---------------------------------------~eV-----r~~~~t~l~~fL~eI----------------~- 240 (675)
T KOG0212|consen 222 ---------------------------------------DEV-----RTLTDTLLSEFLAEI----------------R- 240 (675)
T ss_pred ---------------------------------------HHH-----HHHHHHHHHHHHHHH----------------h-
Confidence 000 11100 122222222 1
Q ss_pred HHhcCCC-CcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchH-HHHHH
Q 000565 312 LVLGGAA-DHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVL-VIAES 389 (1418)
Q Consensus 312 ll~~~~~-~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~-vi~~s 389 (1418)
..... +|+ ++...+...+.....-+...|+.+|.++.+..|+++-++...++..++..+.++-. .+.+.
T Consensus 241 --s~P~s~d~~-------~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 241 --SSPSSMDYD-------DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred --cCccccCcc-------cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence 11111 343 34555667788888999999999999999999999999999999999988887643 34444
Q ss_pred HHHHHHHHHHhCC---------ccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcC
Q 000565 390 SDNCIKTMLRNCK---------AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVAD 460 (1418)
Q Consensus 390 a~~al~~i~~~~~---------~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~D 460 (1418)
+...-..+..-++ +..++..+...+ .+-+...|.+|.+|+..+..+.+.. +-.|.+.+-..+.+.+.|
T Consensus 312 a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcC
Confidence 4333323333222 347888888888 4668999999999999999999875 446777888899999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 000565 461 AMSEVRSTARMCYRMFA 477 (1418)
Q Consensus 461 ad~eVR~~Ar~a~~~l~ 477 (1418)
.+.+|=..+-..+..+.
T Consensus 389 ~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 389 RSDEVVLLALSLLASIC 405 (675)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 99999887776665543
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.02 E-value=0.00024 Score=85.99 Aligned_cols=368 Identities=12% Similarity=0.108 Sum_probs=230.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~-~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
++=++++..-..|++|+..|.+.....+. .+-+++++..++ +.+.|..-.. -+..|..++.++.+..++|+..
T Consensus 368 llLkvKNG~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~tLeDqerhl---lVkvidriLyklDdlvrpYVhk 441 (1172)
T KOG0213|consen 368 LLLKVKNGTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSPTLEDQERHL---LVKVIDRILYKLDDLVRPYVHK 441 (1172)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCccccchhhhh---HHHHHHHHHHhhcccchhceee
Confidence 34456677788899999988877765432 233556665554 4556654333 3345555666677788899988
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHH
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILP 162 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~ 162 (1418)
|+-.+--.+-|..-..|-..++.+..+...++....+..+-. -+.++.+-||.-+...+.-.+..||. ..++|
T Consensus 442 ILvViepllided~yar~egreIisnLakaaGla~mistmrp-Didn~deYVRnttarafavvasalgi------p~llp 514 (1172)
T KOG0213|consen 442 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRP-DIDNKDEYVRNTTARAFAVVASALGI------PALLP 514 (1172)
T ss_pred eEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHHhCc------HHHHH
Confidence 876665566777777888889999999998887776666554 68899999999999998888888886 56777
Q ss_pred HHHHhcCCC-ChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhccc
Q 000565 163 PILQMLNDP-NPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTAS 241 (1418)
Q Consensus 163 ~l~~lL~D~-~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s 241 (1418)
++....+.. .-+-|..++.+.-.|.-.+|-.+.++|. .+++-|...+..-+. +
T Consensus 515 fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~------~lv~ii~~gl~De~q-----------k--------- 568 (1172)
T KOG0213|consen 515 FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLK------PLVKIIEHGLKDEQQ-----------K--------- 568 (1172)
T ss_pred HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhH------HHHHHHHHhhcccch-----------h---------
Confidence 777777666 6788999999999999999988888886 445555544431100 0
Q ss_pred CCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHH-HHHHHHHHHHHHHhc-----
Q 000565 242 FNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWS-VRIAAMQRVEGLVLG----- 315 (1418)
Q Consensus 242 ~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~-~R~~AL~~L~~ll~~----- 315 (1418)
+|...+..- +... +...|+-+ +.|+.++.-| |+ .|.-.-+.|.+++++
T Consensus 569 ---VR~itAlal----sala-------eaa~Pygi-------e~fDsVlkpL-----wkgir~hrgk~laafLkAigyli 622 (1172)
T KOG0213|consen 569 ---VRTITALAL----SALA-------EAATPYGI-------EQFDSVLKPL-----WKGIRQHRGKELAAFLKAIGYLI 622 (1172)
T ss_pred ---hhhHHHHHH----HHHH-------HhcCCcch-------HHHHHHHHHH-----HHHHHHccChHHHHHHHHHhhcc
Confidence 111000000 0000 00112222 2344444433 32 122222223333322
Q ss_pred --CCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHH-----HHH
Q 000565 316 --GAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLV-----IAE 388 (1418)
Q Consensus 316 --~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~v-----i~~ 388 (1418)
...+|..++ -++++..+...+.......-+-.+.++..++..-|-.=.-.-..++|.+|..+....-. .+
T Consensus 623 plmd~eya~yy--Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~yk- 699 (1172)
T KOG0213|consen 623 PLMDAEYASYY--TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYK- 699 (1172)
T ss_pred ccccHHHHHHh--HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchh-
Confidence 123344432 24555556666666665555556666666665555432223345888888776543211 11
Q ss_pred HHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCC
Q 000565 389 SSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDA 440 (1418)
Q Consensus 389 sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~ 440 (1418)
....+-..|+..+|...++..++..++ +.++.-|+..++....++...+..
T Consensus 700 qlv~ttv~ia~KvG~~~~v~R~v~~lk-de~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 700 QLVDTTVEIAAKVGSDPIVSRVVLDLK-DEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hHHHHHHHHHHHhCchHHHHHHhhhhc-cccHHHHHHHHHHHHHHHhccccc
Confidence 112344568889999888888888885 669999999999999999998865
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.1e-06 Score=104.25 Aligned_cols=449 Identities=14% Similarity=0.105 Sum_probs=278.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-hhhHHHHHhhhHHHHHH
Q 000565 11 KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS-GEHFKLHFNALVPAVVE 89 (1418)
Q Consensus 11 ~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l-~~~~~~~~~~ilp~Lle 89 (1418)
++|..-++|.-+|.-+.+..++.+ +..++..+...++.+||+-.++|.-+++.+.++. ...+.+.+...+|.++.
T Consensus 338 DdWnp~kAAg~CL~l~A~~~~D~I----v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQCVGDDI----VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred ccCcHHHHHHHHHHHHHHHhcccc----hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 679999999999999988765444 2355555666889999999999999999999775 34678899999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHh----ChhH----HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcC---CCc---ch
Q 000565 90 RLGDAKQPVRDAARRLLLTLMEVS----SPTI----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFS---ATE---LT 155 (1418)
Q Consensus 90 klgD~k~~Vr~~a~~~L~~l~e~~----~p~~----v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg---~~~---l~ 155 (1418)
.+.|+.-.||+.+.++|-.+++.+ .++. ++..++. ++ +..|||-..+|..+..+.+..- ... -+
T Consensus 414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~-gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~ 491 (859)
T KOG1241|consen 414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE-GL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDP 491 (859)
T ss_pred HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH-Hh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 999999999999999999999863 3332 3333433 44 6679999999999888776421 111 11
Q ss_pred hhhhhHHHHHH-hc-----CC-CChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCC
Q 000565 156 LQRAILPPILQ-ML-----ND-PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGL 228 (1418)
Q Consensus 156 l~k~ll~~l~~-lL-----~D-~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~ 228 (1418)
. .++.+.++. +| .| .+...|.+|+++|.+|.++....+...+. ++-...++.|.+-+.. +.-+-...
T Consensus 492 ~-t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~--~~~l~il~kl~q~i~~---~~l~~~dr 565 (859)
T KOG1241|consen 492 A-TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ--KLTLVILEKLDQTISS---QILSLADR 565 (859)
T ss_pred c-chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH--HHHHHHHHHHHHHHHH---HhccHhhH
Confidence 1 233343333 33 24 45689999999999999999987666555 3333344444333331 00000000
Q ss_pred CCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHH-HHHHHHhhhhcCCCCCHHHHHHHHH
Q 000565 229 PNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKEL-IREFEKIGSTLVPDKDWSVRIAAMQ 307 (1418)
Q Consensus 229 ~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl-~~~l~~i~~~l~~~~dW~~R~~AL~ 307 (1418)
..+ .+.- +.-.+ ..+ .+. .-+++ ++ ++. +..|.-++..|...+.--.-.+|+-
T Consensus 566 -~q~--~eLQ--------s~Lc~--------~Lq--~i~-rk~~~-~~---~~~~d~iM~lflri~~s~~s~~v~e~a~l 619 (859)
T KOG1241|consen 566 -AQL--NELQ--------SLLCN--------TLQ--SII-RKVGS-DI---REVSDQIMGLFLRIFESKRSAVVHEEAFL 619 (859)
T ss_pred -HHH--HHHH--------HHHHH--------HHH--HHH-HHccc-cc---hhHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 000 0000 00000 000 000 00000 01 111 1224444445543222335667777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccch--H
Q 000565 308 RVEGLVLGGAADHPCFRGLLKQLVGPLSTQL-SDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITV--L 384 (1418)
Q Consensus 308 ~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l-~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~--~ 384 (1418)
.+..++..-.. .|..++..+.+.|...+ +-.-.+|...|.-+++.|+..|+.+|-+|++.++..|++.+.+.+ .
T Consensus 620 aV~tl~~~Lg~---~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 620 AVSTLAESLGK---GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR 696 (859)
T ss_pred HHHHHHHHHhH---hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc
Confidence 77777754332 35555667777777777 446789999999999999999999999999999999999998653 0
Q ss_pred HHHHHHHHHHHHHHHhCCc------cchHHHHHHHh--hhCC--------CHHHHHHHHHHHHHHHHhCCCCc---cccc
Q 000565 385 VIAESSDNCIKTMLRNCKA------VRVLPRIADCA--KNDR--------NAVLRARCCEYALLVLEHWPDAP---EIQR 445 (1418)
Q Consensus 385 vi~~sa~~al~~i~~~~~~------~~llp~l~~~l--~~~K--------n~~vR~~~~e~L~~il~~~~~~~---~l~~ 445 (1418)
.+.-....|...|.-.++. ..+++.+..+- ..++ .-.+|..|.+...-+++.+.++. .+..
T Consensus 697 ~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p 776 (859)
T KOG1241|consen 697 NVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP 776 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Confidence 1111233444444444442 34555554433 2232 12478888888888888776421 2345
Q ss_pred cHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHchhHHHHHhccCCHHHHHHHhh
Q 000565 446 SADLYEDLIRCCVADAMS--EVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINE 501 (1418)
Q Consensus 446 ~~~~l~~~l~~~l~Dad~--eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~~ 501 (1418)
+++.+...|.+.-.|.+- .+-..|...++-|...||+....++..- +-....|.+
T Consensus 777 ~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~-~~i~~~L~~ 833 (859)
T KOG1241|consen 777 YVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDE-DWIKDFLNE 833 (859)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcch-HHHHHHHHH
Confidence 567777777775555443 4455666677778888988877765332 344445544
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=98.92 E-value=8.8e-06 Score=104.35 Aligned_cols=394 Identities=13% Similarity=0.113 Sum_probs=217.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
+++..+.++|...|.-++--|..+.+.. +...--.+..+.+-++|+|+.++-.||.+++.+.. ...+..
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~-----pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~ 140 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQ-----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEY 140 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccC-----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHH
Confidence 3444455555555555555555544321 11122334556677788899999999988887632 345666
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh-----HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcC-------
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-----IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFS------- 150 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~-----~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg------- 150 (1418)
+++.+...+.|..+-||..|.-|+..+.... |+ ..++.+.. .+.+++|-|...++..|..+.+..+
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~ 218 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVNDYGSEKIESSN 218 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHHHhCchhhHHHH
Confidence 7888888899999999999999999988752 32 23455555 6778888888777766655532211
Q ss_pred -----------------------------CCc-chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhc
Q 000565 151 -----------------------------ATE-LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR 200 (1418)
Q Consensus 151 -----------------------------~~~-l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~ 200 (1418)
+.. -.. ..++..+...|.+.|+.|--+|+.++..+.....+
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~-------- 289 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ-------- 289 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH--------
Confidence 110 001 23555566666677777766666666655433221
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChH
Q 000565 201 HNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEK 280 (1418)
Q Consensus 201 ~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~ 280 (1418)
..++.+..++....-...+.+. ...|..= ..+.-+-...+.
T Consensus 290 -----~~~~~~~~rl~~pLv~L~ss~~-eiqyvaL---------------------------------r~I~~i~~~~P~ 330 (746)
T PTZ00429 290 -----ELIERCTVRVNTALLTLSRRDA-ETQYIVC---------------------------------KNIHALLVIFPN 330 (746)
T ss_pred -----HHHHHHHHHHHHHHHHhhCCCc-cHHHHHH---------------------------------HHHHHHHHHCHH
Confidence 2222222222110000000000 0000000 000000000011
Q ss_pred HHHHHHHHhhhhc---CCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 000565 281 ELIREFEKIGSTL---VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLS 357 (1418)
Q Consensus 281 dl~~~l~~i~~~l---~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La 357 (1418)
- +..-...| .+|.+ ..|...|+.|-.++.. .+ +..++.-|..-+.|....++++++..|+.+|
T Consensus 331 l----f~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane-----~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 331 L----LRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP-----SV----APEILKELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred H----HHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc-----cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 1 11112222 23444 4899999999888642 22 3345555656677888899999999999998
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHh--hhCCCHHHHHHHHHHHHHHHH
Q 000565 358 KELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCA--KNDRNAVLRARCCEYALLVLE 435 (1418)
Q Consensus 358 ~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l--~~~Kn~~vR~~~~e~L~~il~ 435 (1418)
..+ ...++.++..|++.+.++..++. .+...+..|++......+++.+.+.+ ..-..+..|. .+.|++-
T Consensus 397 ~k~----~~~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKa----aiiWILG 467 (746)
T PTZ00429 397 IKV----DSVAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKV----SLLWMLG 467 (746)
T ss_pred HhC----hHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHH----HHHHHHH
Confidence 654 55788889999888877666555 46788888888776555666666533 1123455554 3455555
Q ss_pred hCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhH
Q 000565 436 HWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER 483 (1418)
Q Consensus 436 ~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~ 483 (1418)
++... ++...+.+...+ ....+-+++||-..--+...|.-..|++
T Consensus 468 Ey~~~--I~~a~~~L~~~i-~~f~~E~~~VqlqlLta~vKlfl~~p~~ 512 (746)
T PTZ00429 468 EYCDF--IENGKDIIQRFI-DTIMEHEQRVQLAILSAAVKMFLRDPQG 512 (746)
T ss_pred hhHhh--HhhHHHHHHHHH-hhhccCCHHHHHHHHHHHHHHHhcCcHH
Confidence 55432 111112222322 2334445666666665555555555543
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.2e-05 Score=104.04 Aligned_cols=385 Identities=16% Similarity=0.208 Sum_probs=255.1
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 000565 801 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 880 (1418)
Q Consensus 801 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~ 880 (1418)
-++-|+-|+-|-.++..+.++....+ .+.+++|+..|.++=.||+.||-..--.+-..+|.--+..++.|+..++-.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl---~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKL---EPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDE 1043 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhh---hhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 48899999999999999998865433 378999999999999999999999988999999998888899999999999
Q ss_pred HHHhhCCCchhhHHHHHHHHHHHHhcCCchhhhHH-------HHHHhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCc
Q 000565 881 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPA-------LLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 953 (1418)
Q Consensus 881 l~~klgD~k~svr~~a~~~L~~~~~~~~~~~~l~~-------l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~ 953 (1418)
|+.+|++..=-||+++.-||.-+...-|.+..... ++|.++|-|- -||++.=.+. ..+.+..+...+..|.
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~-~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAA-RALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhhcccCCc
Confidence 99999999999999998888888877777765443 3444444332 3444432222 2333333322333343
Q ss_pred hhHHHHHHHHcccc-----ccCCHHHHHHHHHHHHHHhccCChHHHHHHHhhCCHHHHHHHHHHHhhhcchhHHHHHHHH
Q 000565 954 GILKLWLAKLTPLV-----HDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 1028 (1418)
Q Consensus 954 ~~~~~~l~~i~~l~-----~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~l~~~l 1028 (1418)
..-+.++.-+.+.+ .-+-.+||+.++++++.|-++.|.. |+.|+|++--+|.+.+
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~--------------------lkP~~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE--------------------LKPHFPKLIPLLLNAY 1181 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh--------------------hcchhhHHHHHHHHHc
Confidence 33344454555532 2467899999999999999888664 4444444433322211
Q ss_pred hhhhcccccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCccccchhhcccCCCCCCCCccchHhhhh
Q 000565 1029 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 1108 (1418)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1418)
. .. .|..-.|-+++- . +...| ...
T Consensus 1182 s----------~l-------E~~vLnYls~r~---------------------------------~-----~~e~e-alD 1205 (1702)
T KOG0915|consen 1182 S----------EL-------EPQVLNYLSLRL---------------------------------I-----NIETE-ALD 1205 (1702)
T ss_pred c----------cc-------chHHHHHHHHhh---------------------------------h-----hhHHH-HHH
Confidence 0 00 000000100000 0 00000 000
Q ss_pred hccCCCCCCCCccccCCCCCCCCCCCCCCCCcCcccccccccccccCCCCCCCCCccccCCCCCccccccCCCCCCCCHH
Q 000565 1109 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 1188 (1418)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~ 1188 (1418)
+
T Consensus 1206 t------------------------------------------------------------------------------- 1206 (1702)
T KOG0915|consen 1206 T------------------------------------------------------------------------------- 1206 (1702)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhccccccc
Q 000565 1189 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMED 1267 (1418)
Q Consensus 1189 ~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~-~~~vr~~aL~~L~~l~~~~~~~~~~ 1267 (1418)
+........ + -++-|..+++.-+. ..+.++...+.+.+... +...|-.|-.++.-|+...+..+.|
T Consensus 1207 -~R~s~akss---p-----mmeTi~~ci~~iD~----~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1207 -LRASAAKSS---P-----MMETINKCINYIDI----SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred -HHHhhhcCC---c-----HHHHHHHHHHhhhH----HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 000000000 0 01122222332222 23566666777777543 4446777778888888989999999
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc----ccchhhHHHHHHHHHHHHhhcCHHHHH
Q 000565 1268 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELM 1343 (1418)
Q Consensus 1268 ~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~----s~~~~~~~~alk~l~~lv~~~~~~~l~ 1343 (1418)
|..-++-.++-..+|....|+++...|+..++....|.++.+++...+. ..+.. +-.++..+-. +..+.++.|.
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~-Ian~s~e~Lk 1351 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISN-IANYSQEMLK 1351 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHH-HHHhhHHHHH
Confidence 9999999999999999999999999999999999999988877755553 22222 2334455555 6678889999
Q ss_pred hhhhhhHHHHHHHhcCC
Q 000565 1344 AQLPSFLPALFEAFGNQ 1360 (1418)
Q Consensus 1344 ~~L~~l~p~l~~~~~d~ 1360 (1418)
.|...|+|.++=++++.
T Consensus 1352 n~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1352 NYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 99999999999888876
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.84 E-value=1.2e-06 Score=111.15 Aligned_cols=170 Identities=20% Similarity=0.207 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccc-cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDR-RSSIVKQACHLLCFLSKELLGDFEACAEMFIP 373 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~-rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp 373 (1418)
.+.|=..|..+++.|..++.. .+ ...++..|...+.+. ...+.++++..|+.++...... .++++.
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~-----~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----~~~~v~ 380 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANE-----SN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----AEWYVD 380 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--H-----HH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----HHHHHH
T ss_pred CCCChhHHHHHHHHHhhcccc-----cc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----HHHHHH
Confidence 355666888888888887731 22 344555555555544 4458899999999999888554 566777
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCcc-ccccHHHH
Q 000565 374 VLFKLVVITVLVIAESSDNCIKTMLRNCKA--VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPE-IQRSADLY 450 (1418)
Q Consensus 374 ~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~--~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~-l~~~~~~l 450 (1418)
.+++.+......+...+...+..++.+... ..++..+.+.+.+-+.+.+++ .+.|++.++..... .+ ....+
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~----~~~wilGEy~~~~~~~~-~~~~~ 455 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALA----AAIWILGEYGELIENTE-SAPDI 455 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHH----HHHHHHHHHCHHHTTTT-HHHHH
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHH----HHHhhhcccCCcccccc-cHHHH
Confidence 777777777667788888889888888664 467888888885556777765 44555555543210 11 34556
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHchh
Q 000565 451 EDLIRCCVADAMSEVRSTARMCYRMFAKTWPE 482 (1418)
Q Consensus 451 ~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~ 482 (1418)
...+.....+.+++||...-.++..+...+|+
T Consensus 456 ~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 456 LRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 66677777888899999999999999988884
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.81 E-value=8.6e-07 Score=118.47 Aligned_cols=271 Identities=20% Similarity=0.184 Sum_probs=157.1
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhh
Q 000565 45 CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS 124 (1418)
Q Consensus 45 ~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~ 124 (1418)
.|...|.|.++.|...|+++|+.+- -..+++.|+..|.|....||..|..+|..+.+....... +..
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~---L~~ 691 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPA---LRD 691 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHH---HHH
Confidence 3445567888888888888777652 123567777777888888888888887777654333222 222
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCC
Q 000565 125 YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLP 204 (1418)
Q Consensus 125 ~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~ 204 (1418)
.+++.+|.||..++.+|..+ +.. -...+..+|.|+++.||.+|...|+.+-.. +.+..
T Consensus 692 -~L~~~d~~VR~~A~~aL~~~----~~~-------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~--~~l~~-------- 749 (897)
T PRK13800 692 -HLGSPDPVVRAAALDVLRAL----RAG-------DAALFAAALGDPDHRVRIEAVRALVSVDDV--ESVAG-------- 749 (897)
T ss_pred -HhcCCCHHHHHHHHHHHHhh----ccC-------CHHHHHHHhcCCCHHHHHHHHHHHhcccCc--HHHHH--------
Confidence 45667888888777766542 111 012345677888888888887776653100 00100
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHH
Q 000565 205 NSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIR 284 (1418)
Q Consensus 205 ~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~ 284 (1418)
T Consensus 750 -------------------------------------------------------------------------------- 749 (897)
T PRK13800 750 -------------------------------------------------------------------------------- 749 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhH
Q 000565 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1418)
Q Consensus 285 ~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f 364 (1418)
+..|.++..|..+.+.|..+-.... . ....|...++|....|...|+..|+.+...
T Consensus 750 --------~l~D~~~~VR~~aa~aL~~~~~~~~---~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----- 805 (897)
T PRK13800 750 --------AATDENREVRIAVAKGLATLGAGGA---P--------AGDAVRALTGDPDPLVRAAALAALAELGCP----- 805 (897)
T ss_pred --------HhcCCCHHHHHHHHHHHHHhccccc---h--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-----
Confidence 1134445555555554443321100 0 011222334444555555555555443110
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCcccc
Q 000565 365 EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQ 444 (1418)
Q Consensus 365 ~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~ 444 (1418)
..+.+.|+..+.+....+|.+|..+|.. .+....++.|...+ +|+++.||..++..|..+ ...
T Consensus 806 ----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~----l~~~~a~~~L~~~L-~D~~~~VR~~A~~aL~~~----~~~---- 868 (897)
T PRK13800 806 ----PDDVAAATAALRASAWQVRQGAARALAG----AAADVAVPALVEAL-TDPHLDVRKAAVLALTRW----PGD---- 868 (897)
T ss_pred ----chhHHHHHHHhcCCChHHHHHHHHHHHh----ccccchHHHHHHHh-cCCCHHHHHHHHHHHhcc----CCC----
Confidence 1122334555555555666666666643 34455667777777 688999999888887763 211
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 000565 445 RSADLYEDLIRCCVADAMSEVRSTARMCYR 474 (1418)
Q Consensus 445 ~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~ 474 (1418)
+...+.|.+++.|.|++||.+|.+++.
T Consensus 869 ---~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 869 ---PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 234667778899999999999999875
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=98.79 E-value=1.3e-05 Score=102.91 Aligned_cols=151 Identities=10% Similarity=0.011 Sum_probs=96.6
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccch
Q 000565 328 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD-FEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRV 406 (1418)
Q Consensus 328 ~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~-f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~l 406 (1418)
..++..+...+...|..|+-+|+.++-.+...+... ....+..+-+.|+.+. .+...++=.+...|..++... +.-+
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf 332 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLL 332 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHH
Confidence 456666777788889999999999999887654322 2334444556666654 333446666677777776644 2222
Q ss_pred HHHHHH--HhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHH
Q 000565 407 LPRIAD--CAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERS 484 (1418)
Q Consensus 407 lp~l~~--~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a 484 (1418)
.+.+-. ..-+|.. .||..-.+.|..+ .... .+..+.+-|...+.|.|.+.+..+.++++.+...+|..+
T Consensus 333 ~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~L---ane~-----Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a 403 (746)
T PTZ00429 333 RTNLDSFYVRYSDPP-FVKLEKLRLLLKL---VTPS-----VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVA 403 (746)
T ss_pred HHHHHhhhcccCCcH-HHHHHHHHHHHHH---cCcc-----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH
Confidence 233211 1114533 4777444444443 3222 244566667778889999999999999999999999887
Q ss_pred HHHhc
Q 000565 485 RRLFS 489 (1418)
Q Consensus 485 ~~ll~ 489 (1418)
...+.
T Consensus 404 ~~cV~ 408 (746)
T PTZ00429 404 PDCAN 408 (746)
T ss_pred HHHHH
Confidence 77553
No 26
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.78 E-value=1.5e-05 Score=92.66 Aligned_cols=210 Identities=14% Similarity=0.126 Sum_probs=168.1
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 287 EKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD-RRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 287 ~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D-~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
..++..+.++..-.+|.+||..|..++..+. +..|-+++.+|...+...+.| .....-+.|+.+|..+...-...|.
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~s--fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGS--FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 3444445556678899999999999987553 345556677888778888888 6777888999999999999988888
Q ss_pred HHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCCccch---HHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCc
Q 000565 366 ACAEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNCKAVRV---LPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAP 441 (1418)
Q Consensus 366 ~~~~~llp~Ll~~~~~~-~~vi~~sa~~al~~i~~~~~~~~l---lp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~ 441 (1418)
.+.+..+..+|+...|+ +.+++.++..|+..+..|.+...| -|.|+. . .+ | .-..|.+.+..+++..+.+
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-~-D~--~-~~~~~iKm~Tkl~e~l~~E- 440 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT-A-DE--P-RAVAVIKMLTKLFERLSAE- 440 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc-C-cc--h-HHHHHHHHHHHHHhhcCHH-
Confidence 88998888888888887 568888888889888888877543 344443 1 12 2 2234557788888888765
Q ss_pred cccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHch-hHHHHHhccCCHHHHHHHhhhcC
Q 000565 442 EIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWP-ERSRRLFSSFDPAIQRIINEEDG 504 (1418)
Q Consensus 442 ~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p-~~a~~ll~~Ld~~~qk~L~~~~~ 504 (1418)
++...++.+.+++.++.+...+.||+.|.-|+.+++..+| ++.+..|..|+.++.+.|+-+..
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYin 504 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYIN 504 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHH
Confidence 5666678899999999999999999999999999999999 88999999999999999998743
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=5.9e-06 Score=97.41 Aligned_cols=392 Identities=18% Similarity=0.148 Sum_probs=243.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 000565 10 AKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVE 89 (1418)
Q Consensus 10 s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Lle 89 (1418)
+.+-..|..|+-.+....-..+... ...+..++.-+...+.|.+.+|.--|++.+-.+++..+..+-.|++.+...+-.
T Consensus 54 s~~~n~rkGgLiGlAA~~iaLg~~~-~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k 132 (675)
T KOG0212|consen 54 SPHANMRKGGLIGLAAVAIALGIKD-AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK 132 (675)
T ss_pred CcccccccchHHHHHHHHHHhcccc-HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 3444455566666666544443322 224556666666788999999999999999999999888888999999999888
Q ss_pred HhCCCChHHHHHHHHHHHHHHHH--------hChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhH
Q 000565 90 RLGDAKQPVRDAARRLLLTLMEV--------SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAIL 161 (1418)
Q Consensus 90 klgD~k~~Vr~~a~~~L~~l~e~--------~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll 161 (1418)
-.+|+...||..| +.|..+.+. ++.+..+. ++..-+...||-+|..++.||.-+-..=+.+-+.+...++
T Consensus 133 lsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ip-LL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~l 210 (675)
T KOG0212|consen 133 LSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIP-LLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLL 210 (675)
T ss_pred HhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHH
Confidence 8899998888766 455555542 22223232 2333566789999999999997643321222222236789
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHhcChh------------HHHhhhcCCCCHHHHHHH--HHHHHHhCCCCCCCCC
Q 000565 162 PPILQMLNDPNPGVREAAILCIEEMYTYAGPQ------------FRDELHRHNLPNSMVKDI--NARLERIQPQIRSSDG 227 (1418)
Q Consensus 162 ~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~------------l~~~L~~~~l~~~~l~~l--~~~f~~~~~~~~~~~~ 227 (1418)
+.+..+|+|++++||..+-.++.++.+-+... +..+++. ..+.-+.+.| ..+|-++.+. +.
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~----~~ 285 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGR----DL 285 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCc----ch
Confidence 99999999999999999999888887655311 1111210 1111222222 1334433221 10
Q ss_pred CCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCC---------ccccChHHHHHH--HHHhhhhc---
Q 000565 228 LPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEP---------IKVYSEKELIRE--FEKIGSTL--- 293 (1418)
Q Consensus 228 ~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~---------i~i~s~~dl~~~--l~~i~~~l--- 293 (1418)
- -|.+.=. ...-+.- .+.++..+.. ..+.+.....++ +..|++.+
T Consensus 286 l--~~~s~il-------~~iLpc~------------s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~ 344 (675)
T KOG0212|consen 286 L--LYLSGIL-------TAILPCL------------SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKY 344 (675)
T ss_pred h--hhhhhhh-------hhcccCC------------CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH
Confidence 0 0000000 0000000 0000000000 000011111100 11333333
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000565 294 VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIP 373 (1418)
Q Consensus 294 ~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp 373 (1418)
..+..-+.|+++|+.|.-+...... ....+...++..|.+.+.|.-.-|+..++.+++.++..-.. + +...++.
T Consensus 345 l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-~--~~~~fl~ 418 (675)
T KOG0212|consen 345 LSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-P--NLRKFLL 418 (675)
T ss_pred hhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-c--cHHHHHH
Confidence 1466778999999999887753322 34455788999999999999999999999999999876532 2 5678899
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 374 VLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 374 ~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
.|++++...++.....+..-|+.++-.....++...+.+.+....|-+.-....+.|+.++-.
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlT 481 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMVQALNTILLT 481 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999998888777777664444444444455566555443
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.72 E-value=7.3e-06 Score=104.13 Aligned_cols=400 Identities=15% Similarity=0.162 Sum_probs=251.9
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 4 ALELARAK--DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 4 ~l~~l~s~--~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+-+.+.+. +-..|.+++..|..+..... ++..+.-.+.+.+...|+.....+.-++..+...-.+ .+-
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~------~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~ 78 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGY------DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLI 78 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC------CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHH
Confidence 33444455 78888888888877654321 2334444556677888999998888888877644222 455
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhh-h
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA-I 160 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~-l 160 (1418)
.++..+..-|.++++.+|..|..+|..+....--+.+...+.+ .+.|++|.||..++.++..+.+.++. .+ +. +
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~-ll~~~~~~VRk~A~~~l~~i~~~~p~-~~---~~~~ 153 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIK-LLSDPSPYVRKKAALALLKIYRKDPD-LV---EDEL 153 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHH-HHHSSSHHHHHHHHHHHHHHHHHCHC-CH---HGGH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHH-HhcCCchHHHHHHHHHHHHHhccCHH-HH---HHHH
Confidence 5777787779999999999999998887733222344555555 88999999999999999998876433 22 33 7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhh-hc
Q 000565 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEI-KT 239 (1418)
Q Consensus 161 l~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~-r~ 239 (1418)
++.+..+|.|+++.|+.+|..++.++ +.........+. .....+...+ +. + .| +..-.. +
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~------~~~~~L~~~l----~~-~-~~-----~~q~~il~- 214 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP------KLIRILCQLL----SD-P-DP-----WLQIKILR- 214 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH------HHHHHHHHHH----TC-C-SH-----HHHHHHHH-
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH------HHHHHhhhcc----cc-c-ch-----HHHHHHHH-
Confidence 99999999999999999999999999 322221111111 1111111111 00 0 00 000000 0
Q ss_pred ccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHH--HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 000565 240 ASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKEL--IREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGA 317 (1418)
Q Consensus 240 ~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl--~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~ 317 (1418)
.... .-+. ...+- ...++.+.+.+. +.++..+.+++..+..+..
T Consensus 215 --------------------~l~~-------~~~~---~~~~~~~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~--- 260 (526)
T PF01602_consen 215 --------------------LLRR-------YAPM---EPEDADKNRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSP--- 260 (526)
T ss_dssp --------------------HHTT-------STSS---SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSS---
T ss_pred --------------------HHHh-------cccC---ChhhhhHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhc---
Confidence 0000 0000 00111 122333333332 5678888888887775432
Q ss_pred CCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 000565 318 ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTM 397 (1418)
Q Consensus 318 ~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i 397 (1418)
.+. .+..++..|...+.+....+.-.++.+|..|+......+. .....++-...+....|+..+...+..+
T Consensus 261 --~~~---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 261 --SPE---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp --SHH---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred --chH---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 111 3566677777777777777888888888888777633221 2222233333356667888888888888
Q ss_pred HHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000565 398 LRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFA 477 (1418)
Q Consensus 398 ~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~ 477 (1418)
+.......+++.+...+.....+.+|..++..+..+..+++.. .+.+.+.+.+.+...+..+...+...+..+.
T Consensus 332 ~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll 405 (526)
T PF01602_consen 332 ANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD------AEWYVDTLLKLLEISGDYVSNEIINVIRDLL 405 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch------HHHHHHHHHHhhhhccccccchHHHHHHHHh
Confidence 8877788899998888843337889999999999988888553 3457778888888888888888888887777
Q ss_pred HHchhHHHH
Q 000565 478 KTWPERSRR 486 (1418)
Q Consensus 478 ~~~p~~a~~ 486 (1418)
...|+.-..
T Consensus 406 ~~~~~~~~~ 414 (526)
T PF01602_consen 406 SNNPELREK 414 (526)
T ss_dssp HHSTTTHHH
T ss_pred hcChhhhHH
Confidence 776665433
No 29
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.63 E-value=6.3e-05 Score=88.67 Aligned_cols=325 Identities=13% Similarity=0.132 Sum_probs=210.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh-hhHHHHHhhhHHHHH
Q 000565 10 AKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG-EHFKLHFNALVPAVV 88 (1418)
Q Consensus 10 s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~-~~~~~~~~~ilp~Ll 88 (1418)
.+||..-++|..+|+-+.+..++.+ +..++..+-..++..||.-.+.|.-+|+.+.++-- ..+.+++.+.+|+|+
T Consensus 339 ~DdWn~smaA~sCLqlfaq~~gd~i----~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~ 414 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQLKGDKI----MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIE 414 (858)
T ss_pred ccccchhhhHHHHHHHHHHHhhhHh----HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHH
Confidence 3789999999999998887654433 34455566678899999999999999999997743 356789999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHH----hChhH----HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCc----chh
Q 000565 89 ERLGDAKQPVRDAARRLLLTLMEV----SSPTI----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE----LTL 156 (1418)
Q Consensus 89 eklgD~k~~Vr~~a~~~L~~l~e~----~~p~~----v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~----l~l 156 (1418)
.-..|+--.|++.+.+|+-.+... ++|.. ++...+. |+ -.+|++-..|+..+..++..|.... -.+
T Consensus 415 n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~li-Gl-~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l 492 (858)
T COG5215 415 NEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLI-GL-MDCPFRSINCSWRKENLVDHIAKAVREVESFL 492 (858)
T ss_pred HhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHh-hh-hccchHHhhhHHHHHhHHHhhhhhhccccchh
Confidence 999999999999999999888765 45532 2222222 44 3568888888877777777765432 112
Q ss_pred hhhhHHHHHHhc------CCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 000565 157 QRAILPPILQML------NDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPN 230 (1418)
Q Consensus 157 ~k~ll~~l~~lL------~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~ 230 (1418)
-++.+.++..| .+.+...|.+++.+|++|..+....+...+. .....+.+++++... ..+
T Consensus 493 -~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a------~~~~~~~~kl~~~is----v~~--- 558 (858)
T COG5215 493 -AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA------GFYDYTSKKLDECIS----VLG--- 558 (858)
T ss_pred -HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH------HHHHHHHHHHHHHHH----Hhh---
Confidence 23333333322 3666778999999999999998877666665 223333344442100 000
Q ss_pred cchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 000565 231 TFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVE 310 (1418)
Q Consensus 231 ~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~ 310 (1418)
+++.-+|-. ..+.+.. +-+.-|.
T Consensus 559 --------------------------------------------q~l~~eD~~-~~~elqS------------N~~~vl~ 581 (858)
T COG5215 559 --------------------------------------------QILATEDQL-LVEELQS------------NYIGVLE 581 (858)
T ss_pred --------------------------------------------hhhhhHHHH-HHHHHHH------------HHHHHHH
Confidence 000000000 0111111 1122344
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHH
Q 000565 311 GLVLGGAADHPCFRGLLKQLVGPLSTQLSD-RRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAES 389 (1418)
Q Consensus 311 ~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D-~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~s 389 (1418)
+++.....+.+..-. .|+..|...+.. .-+.+-...+..|+.|+..++..|+.|+..|+|.|.+.+..+...+...
T Consensus 582 aiir~~~~~ie~v~D---~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 582 AIIRTRRRDIEDVED---QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHhcCCCcccHHH---HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHH
Confidence 455433333332111 122222222322 2455667789999999999999999999999999999998888889888
Q ss_pred HHHHHHHHHHhCCc------cchHHHHHHHh
Q 000565 390 SDNCIKTMLRNCKA------VRVLPRIADCA 414 (1418)
Q Consensus 390 a~~al~~i~~~~~~------~~llp~l~~~l 414 (1418)
|..-+..+....+. ..++..|...+
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 88888888777653 23445555555
No 30
>PRK09687 putative lyase; Provisional
Probab=98.60 E-value=7.3e-06 Score=94.34 Aligned_cols=259 Identities=15% Similarity=-0.000 Sum_probs=174.1
Q ss_pred HHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchh
Q 000565 77 KLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL 156 (1418)
Q Consensus 77 ~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l 156 (1418)
..|-..-++.|++.|.|....||..+..+|..+- ...+++.+.. .+++.++.+|...+..|.. +|...-..
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~----lg~~~~~~ 88 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG----GQDVFRLAIE-LCSSKNPIERDIGADILSQ----LGMAKRCQ 88 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC----cchHHHHHHH-HHhCCCHHHHHHHHHHHHh----cCCCccch
Confidence 3445556778888889999889999888876553 4556666665 6788899999888877755 34322111
Q ss_pred hhhhHHHHHHh-cCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 000565 157 QRAILPPILQM-LNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAAL 235 (1418)
Q Consensus 157 ~k~ll~~l~~l-L~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~ 235 (1418)
...++.+..+ ++|+++.||..|+.+|+.+.... + .+
T Consensus 89 -~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--------------------------------~-~~--------- 125 (280)
T PRK09687 89 -DNVFNILNNLALEDKSACVRASAINATGHRCKKN--------------------------------P-LY--------- 125 (280)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc--------------------------------c-cc---------
Confidence 4567777766 78999999999988877642000 0 00
Q ss_pred hhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhc
Q 000565 236 EIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLG 315 (1418)
Q Consensus 236 ~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~ 315 (1418)
. ..+ ++.+... ..|.+|.+|..++..|..+
T Consensus 126 ------------------------------------------~-~~a---~~~l~~~-~~D~~~~VR~~a~~aLg~~--- 155 (280)
T PRK09687 126 ------------------------------------------S-PKI---VEQSQIT-AFDKSTNVRFAVAFALSVI--- 155 (280)
T ss_pred ------------------------------------------c-hHH---HHHHHHH-hhCCCHHHHHHHHHHHhcc---
Confidence 0 001 1222222 2467999999998887422
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 000565 316 GAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIK 395 (1418)
Q Consensus 316 ~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~ 395 (1418)
. + ...+..|...+.|.+..|...|+..|+.+ +. .....++.|+..+.+.+..||..|..+|.
T Consensus 156 ---~--~-----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~~----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 156 ---N--D-----EAAIPLLINLLKDPNGDVRNWAAFALNSN----KY----DNPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ---C--C-----HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----CC----CCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1 1 23455666777888999999999999887 11 12357788888999999999988887775
Q ss_pred HHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhc-CCChHHHHHHHHHHH
Q 000565 396 TMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVA-DAMSEVRSTARMCYR 474 (1418)
Q Consensus 396 ~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~-Dad~eVR~~Ar~a~~ 474 (1418)
. ++..+.+|.|++.+. +.. +|..+++.|+. +++. ...+.|..++. +.|++||..|++++.
T Consensus 218 ~----~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~----ig~~--------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 218 L----RKDKRVLSVLIKELK-KGT--VGDLIIEAAGE----LGDK--------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred c----cCChhHHHHHHHHHc-CCc--hHHHHHHHHHh----cCCH--------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 4 567899999999983 433 66655555443 3321 34556666665 889999999988764
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.60 E-value=5e-06 Score=111.26 Aligned_cols=148 Identities=22% Similarity=0.193 Sum_probs=112.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+.+++.|.|++-..|..|++.|..+-. ...+..|...+.|.+..|...|+..|..+.+....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------
Confidence 578899999999999999999986531 13455666778999999999999999877532211
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhH
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAIL 161 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll 161 (1418)
.+.|+..|.+....||..+.++|..+... .+ ..++. .+.+++|.||.+++..|..+ +. .
T Consensus 686 --~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~~----~~l~~-~L~D~d~~VR~~Av~aL~~~----~~---------~ 744 (897)
T PRK13800 686 --APALRDHLGSPDPVVRAAALDVLRALRAG-DA----ALFAA-ALGDPDHRVRIEAVRALVSV----DD---------V 744 (897)
T ss_pred --hHHHHHHhcCCCHHHHHHHHHHHHhhccC-CH----HHHHH-HhcCCCHHHHHHHHHHHhcc----cC---------c
Confidence 25677778888999999999888776421 11 23344 78899999999999888652 11 1
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 162 PPILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 162 ~~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
+.+..+|.|++++||.+|...|+.+..
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 345678999999999999999887743
No 32
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.2e-06 Score=96.93 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=148.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
..+.+|.++||-...+|++-|..+..-....+ .+.+..++=.+.+-+++.+..|...|+.++..++..+.+.+...+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l-~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESL-NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998765433222 23345555566788899999999999999999999988888889999
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchh--hhhh
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL--QRAI 160 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l--~k~l 160 (1418)
++-.|+-|-++.|-.||+.|..+|..|....+|+.++..|+. +..|.||++|...+.++..++...|...+.+ .+..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~-~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl 249 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIP-ILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDL 249 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHH-HHhhhchhhhhhhhccccccceeccccchhhHhHHHH
Confidence 999999999999999999999999999999999999999997 7999999999999999988888777544332 1334
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHH
Q 000565 161 LPPILQMLNDPNPGVREAAILCIEEM 186 (1418)
Q Consensus 161 l~~l~~lL~D~~~~VR~aA~~~L~~l 186 (1418)
++.+..-+.|.=+.+|++|--.+.+.
T Consensus 250 ~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 250 SRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHhhhcccccccccchhHHHHhH
Confidence 45556666788888888876665444
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.0096 Score=77.14 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=121.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhcc---c---cccccHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhhcC----hh---
Q 000565 1240 DDADSSVREVALSLINEMLKNQK---D---VMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYD----PF--- 1305 (1418)
Q Consensus 1240 ~d~~~~vr~~aL~~L~~l~~~~~---~---~~~~~~e~~l~~ll~~-~~d~~~~V~~aA~~al~~i~~~~~----p~--- 1305 (1418)
++-|...|+.|+.+|..|+..+. . +...-++-+|..|... .||....+... .-++..|+..+. -+
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHH
Confidence 66667789999999999884221 1 1111233444444443 46765555554 566666664432 22
Q ss_pred hHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hccc
Q 000565 1306 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFL 1384 (1418)
Q Consensus 1306 ~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg-~~~~ 1384 (1418)
++|..++-+|.+.+-.+..+|+.++..++...+..-+..|++.|||.|..-.+|.+..+|++++.-+-.+.+.+| ++++
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 577777888888888899999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred ccccccChHHHHHHHHHHHh
Q 000565 1385 PYLERLNSTQLRLVTIYANR 1404 (1418)
Q Consensus 1385 p~l~~L~~s~~kll~~yi~r 1404 (1418)
+|++ ..++|+|.- |.|
T Consensus 907 ~~~p---ee~~klL~n-IRK 922 (1176)
T KOG1248|consen 907 SFLP---EEDMKLLTN-IRK 922 (1176)
T ss_pred hhCH---HHHHHHHHH-HHH
Confidence 9999 677777765 444
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.57 E-value=6.1e-05 Score=103.77 Aligned_cols=397 Identities=14% Similarity=0.133 Sum_probs=261.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccc-ChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSL-TSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~-~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
+-+++.|.+.+-..+..|+..|..+....+... ...+ ...+..|.+.+...+.++++.|+-+|+.++.. .+..+..+
T Consensus 449 p~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV 526 (2102)
T PLN03200 449 QLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACV 526 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 457788888888899999988888775332110 0001 12344566778888999999999999999853 33445545
Q ss_pred --hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcch---
Q 000565 81 --NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT--- 155 (1418)
Q Consensus 81 --~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~--- 155 (1418)
..++|.|++-|.+....+++.|..+|..+..... ..++..++. .+.+.+++++..++..+..++..-......
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~-LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTA-LLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHH-HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 2589999999998888899999999999987533 344566665 688899999999988887766532211100
Q ss_pred -hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchh
Q 000565 156 -LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAA 234 (1418)
Q Consensus 156 -l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~ 234 (1418)
.....++.++.+|.+.++.+++.|..+|..++..- +.+.+.+.. .
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~--------------~d~~~avv~------------a-------- 650 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR--------------QDLCESLAT------------D-------- 650 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------------hHHHHHHHH------------c--------
Confidence 00247899999999999999999999999887421 111111100 0
Q ss_pred hhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHh
Q 000565 235 LEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVL 314 (1418)
Q Consensus 235 ~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~ 314 (1418)
| -+ ..++..| .+.+-+.|.++-..|..+..
T Consensus 651 ---------------------------g-------aI---------------pPLV~LL-ss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 651 ---------------------------E-------II---------------NPCIKLL-TNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ---------------------------C-------CH---------------HHHHHHH-hcCChHHHHHHHHHHHHHHh
Confidence 0 01 1111112 34556677777778777775
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 000565 315 GGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCI 394 (1418)
Q Consensus 315 ~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al 394 (1418)
++..+...++. =...+.+|.+.+++.+..++..|+..|..|+..-...-+-.....+|.|.+.+.+...-.++.|..+|
T Consensus 681 ~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 43221111110 12355667778888899999999999999988654332223456799999999999988999999999
Q ss_pred HHHHHhCCccc----------hHHHHHHHhhhCCCHHHHH--HHHHHHHHHHHhCCCCc--------cccccHHHHHHHH
Q 000565 395 KTMLRNCKAVR----------VLPRIADCAKNDRNAVLRA--RCCEYALLVLEHWPDAP--------EIQRSADLYEDLI 454 (1418)
Q Consensus 395 ~~i~~~~~~~~----------llp~l~~~l~~~Kn~~vR~--~~~e~L~~il~~~~~~~--------~l~~~~~~l~~~l 454 (1418)
..++.+.+... .+..+.+.+ +.-+...-. .+.+.|.++.+.-.... ..+.. ..+ +-|
T Consensus 760 ~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L-~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p-~~l-~~l 836 (2102)
T PLN03200 760 AQLLKHFPVDDVLKDSVQCRGTVLALVDLL-NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVP-SSL-EPL 836 (2102)
T ss_pred HHHHhCCChhHHHHHHHHHhCcHHHHHHHH-hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhcc-Cch-HHH
Confidence 99998877433 344555555 233333333 36788888887411110 01100 112 334
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhcc
Q 000565 455 RCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSS 490 (1418)
Q Consensus 455 ~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~ 490 (1418)
..|+.+.+|++...|.+.+..|.+--|.-...++..
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~ 872 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIAN 872 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhc
Confidence 556699999999999999998888777666665543
No 35
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.57 E-value=2.4e-05 Score=92.70 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000565 296 DKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVL 375 (1418)
Q Consensus 296 ~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~L 375 (1418)
++.-+.....+..+..+...+ .+|-..-+.++ ++-.|...++.-|..+.+.|-.+++.|+++.|+ ..++-.|
T Consensus 699 nkh~Kv~~nti~lvg~I~~~~-peyi~~rEWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~L 770 (975)
T COG5181 699 NKHQKVVANTIALVGTICMNS-PEYIGVREWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDIL 770 (975)
T ss_pred hhhHHHhhhHHHHHHHHHhcC-cccCCHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHH
Confidence 455556666676666665433 34432222222 333455667777888999999999999999997 3567788
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH
Q 000565 376 FKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIR 455 (1418)
Q Consensus 376 l~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~ 455 (1418)
++.++..-.-.|.....+|..+.+.|++-.++|.|..-- ...+.+|...+.+.+..+++..+.. .+ .++-.+.++|.
T Consensus 771 lnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~-s~-dYvy~itPlle 847 (975)
T COG5181 771 LNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQA-SL-DYVYSITPLLE 847 (975)
T ss_pred HhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHH-HH-HHHHHhhHHHH
Confidence 888877766677777888999999999999999998776 4678889998999999999988764 22 45567788888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHH
Q 000565 456 CCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 456 ~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
.++.|.|+--|+.|...+.-+.-.
T Consensus 848 DAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred hhhcccchHHHHHHHHHHHHHhcC
Confidence 899999999999999888766543
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.56 E-value=0.0023 Score=76.43 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=127.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhH
Q 000565 6 ELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALV 84 (1418)
Q Consensus 6 ~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~-~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~il 84 (1418)
=++++..-..|++|+..|.+..-+.+. ..-++.++..++ .-+.|..-.. -+..|..+..++++.-.+|+..|+
T Consensus 175 LkvKNG~~~mR~~~lRiLtdkav~fg~---~~vfnkvLp~lm~r~LeDqerhl---~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 175 LKVKNGGKRMRMEGLRILTDKAVNFGA---AAVFNKVLPMLMSRELEDQERHL---VVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred hhcccCCchhhHHHHHHHHHHhhcccH---HHHHHHHHHHHHhhhhhhhhhHh---HHHHHHHHHHhcccccccceeeEE
Confidence 345566777888888888766544321 122455555443 3455543332 334455555666666677877776
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHH
Q 000565 85 PAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPI 164 (1418)
Q Consensus 85 p~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l 164 (1418)
-.+-..+-|....+|-..++.+..+...++....+..+-. -+.|+.+-||.-+-..+.-.+..||. .+++|++
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrp-Di~~~deYVRnvt~ra~~vva~algv------~~llpfl 321 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRP-DITSKDEYVRNVTGRAVGVVADALGV------EELLPFL 321 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccC-CcccccHHHHHHHHHHHHHHHHhhCc------HHHHHHH
Confidence 5555556677777888888889998888776665555443 68899999999888888877888886 5777888
Q ss_pred HHhcCCC-ChhHHHHHHHHHHHHHHhcChhHHHhhh
Q 000565 165 LQMLNDP-NPGVREAAILCIEEMYTYAGPQFRDELH 199 (1418)
Q Consensus 165 ~~lL~D~-~~~VR~aA~~~L~~l~~~~G~~l~~~L~ 199 (1418)
-.+.+.. .-+-|...+.+.-.|...+|-....+|.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~ 357 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLG 357 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhh
Confidence 7777766 6788999999999999999988878776
No 37
>PRK09687 putative lyase; Provisional
Probab=98.55 E-value=5.4e-06 Score=95.41 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=99.3
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
++.+++.|.|.+..+|..++..|..+= . ...+..+.++++|.|..+...|+.+|+.+-.. + ...
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~---~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~--~---~~~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG--------G---QDVFRLAIELCSSKNPIERDIGADILSQLGMA--K---RCQ 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC--------c---chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--c---cch
Confidence 356777778888888888777775331 1 13334445556777888888888888776311 0 002
Q ss_pred hhhHHHHHHH-hCCCChHHHHHHHHHHHHHHHHh-Ch-hHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhh
Q 000565 81 NALVPAVVER-LGDAKQPVRDAARRLLLTLMEVS-SP-TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQ 157 (1418)
Q Consensus 81 ~~ilp~Llek-lgD~k~~Vr~~a~~~L~~l~e~~-~p-~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~ 157 (1418)
..++|.|... +.|....||..+..+|-.++... .+ ...++.+.. .+.|++|+||..++..|.. ++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg~----~~~------ 157 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQI-TAFDKSTNVRFAVAFALSV----IND------ 157 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHH-HhhCCCHHHHHHHHHHHhc----cCC------
Confidence 3455666655 57777778888877777764321 11 233444443 5677788888777766632 221
Q ss_pred hhhHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000565 158 RAILPPILQMLNDPNPGVREAAILCIEEM 186 (1418)
Q Consensus 158 k~ll~~l~~lL~D~~~~VR~aA~~~L~~l 186 (1418)
...++.++.+|.|++++||..|..+|+.+
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 45677778888888888888887776654
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.54 E-value=0.00031 Score=85.14 Aligned_cols=406 Identities=13% Similarity=0.117 Sum_probs=262.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhc-ccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRK-SLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~-~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.++..+++..-..|.-.++.+.+++...+. .++......+++.+...+.+..-.+. ..|..|+.++..++.-.++|+.
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylp 798 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLP 798 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchH
Confidence 456677888889999999999999987653 34444456788888766654332222 3456777788888888899999
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHH---hChhHHHHHH---hhhhhhcCChHHHHHHHHHHHHHHhhcCCCcc-
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEV---SSPTIIVERA---GSYAWTHRSWRVREEFARTVTSAIGLFSATEL- 154 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~---~~p~~v~e~l---l~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l- 154 (1418)
+|+..++-+|..+...||+.|.+++..++.+ |.-...+.++ +-..+...-|.|.-.++.+|..+.+..|....
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999988777654 4444444443 21256677899999999999998888887653
Q ss_pred hhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchh
Q 000565 155 TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAA 234 (1418)
Q Consensus 155 ~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~ 234 (1418)
+..+.++|.+...|.+.+..|.+.++.+++.|.....+-+ ..+. -|.-....++-++...
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v-------~aRE-WMRIcfeLlelLkahk------------ 938 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV-------SARE-WMRICFELLELLKAHK------------ 938 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC-------CHHH-HHHHHHHHHHHHHHHH------------
Confidence 2237899999999999999999999999999987654321 0000 0111111111110000
Q ss_pred hhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHh
Q 000565 235 LEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVL 314 (1418)
Q Consensus 235 ~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~ 314 (1418)
.+.| |+. . ..+|- + .+ +..+.|+ +..++..| +-++|..=...--++..
T Consensus 939 K~iR-------Raa----~-----nTfG~--I-ak------aIGPqdV---LatLlnnL----kvqeRq~RvcTtvaIaI 986 (1172)
T KOG0213|consen 939 KEIR-------RAA----V-----NTFGY--I-AK------AIGPQDV---LATLLNNL----KVQERQNRVCTTVAIAI 986 (1172)
T ss_pred HHHH-------HHH----H-----hhhhH--H-HH------hcCHHHH---HHHHHhcc----hHHHHHhchhhhhhhhh
Confidence 0000 000 0 00110 0 00 0122333 33333333 23334332222111111
Q ss_pred cCCCCcch-HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 000565 315 GGAADHPC-FRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNC 393 (1418)
Q Consensus 315 ~~~~~~~~-f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~a 393 (1418)
..++-. | .+.+.|.....-.+-.|..-.+..+.++++-.|.-=..|+-.+.|-|-..+-|...+.|+.|..+
T Consensus 987 --VaE~c~pF-----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 987 --VAETCGPF-----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred --hhhhcCch-----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 012211 2 23444444455566677778888899999888876667899999999999999999999999999
Q ss_pred HHHHHHhCCc-------cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHH
Q 000565 394 IKTMLRNCKA-------VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVR 466 (1418)
Q Consensus 394 l~~i~~~~~~-------~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR 466 (1418)
|.-|.-+|.. -.++..|+-++ -+.+|.+-....+.++-+-...+.. .+.+-+..+|--+...||
T Consensus 1060 I~Hl~Lg~~g~g~eda~iHLLN~iWpNI-le~sPhviqa~~e~~eg~r~~Lg~~--------~~~~Y~~QGLFHParkVR 1130 (1172)
T KOG0213|consen 1060 IKHLALGVPGTGCEDALIHLLNLIWPNI-LETSPHVIQAFDEAMEGLRVALGPQ--------AMLKYCLQGLFHPARKVR 1130 (1172)
T ss_pred HHHHhcCCCCcCcHHHHHHHHHHhhhhh-cCCChHHHHHHHHHHHHHHHHhchH--------HHHHHHHHhccCcHHHHH
Confidence 9999877642 23455555555 3668888887777777666666542 356667778899999998
Q ss_pred HHHHHHHHHHH
Q 000565 467 STARMCYRMFA 477 (1418)
Q Consensus 467 ~~Ar~a~~~l~ 477 (1418)
+.-.+.|..+.
T Consensus 1131 ~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1131 KRYWTVYNSMY 1141 (1172)
T ss_pred HHHHHHHHhHh
Confidence 76655555443
No 39
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00017 Score=93.88 Aligned_cols=380 Identities=12% Similarity=0.133 Sum_probs=230.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Q 000565 11 KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVER 90 (1418)
Q Consensus 11 ~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llek 90 (1418)
.-|.-|+.|.-.+..+..+....+ .+.+..++.-|-+.-=|++.+|+.+-..+|..++.........|+..|+.-|+..
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl-~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKL-EPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhh-hhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 459999999999999998766544 3556677776666667999999999999999998776677889999999999999
Q ss_pred hCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhh------hhhcCChHHHHH---HHHHHHHHHhhcCC-Ccchhhhhh
Q 000565 91 LGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSY------AWTHRSWRVREE---FARTVTSAIGLFSA-TELTLQRAI 160 (1418)
Q Consensus 91 lgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~------~~~~KnprVr~~---~l~~l~~~l~~fg~-~~l~l~k~l 160 (1418)
|++.-=.||+++.-+|..+...-.-+.+.+.+.+. .+.+-.--||++ ++..+..++-..+. .+..-.+++
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 99998899999999999998753334444443321 232322345553 34455544332221 111111344
Q ss_pred HHHHHHhc-----CCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhh
Q 000565 161 LPPILQML-----NDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAAL 235 (1418)
Q Consensus 161 l~~l~~lL-----~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~ 235 (1418)
+..+.++| .+.-++||..++.++..|.++.|..+++++. .|-|..+ ..+.++.++. -+|.+-
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll----~~~s~lE~~v-------LnYls~ 1194 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLL----NAYSELEPQV-------LNYLSL 1194 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHH----HHccccchHH-------HHHHHH
Confidence 44444433 3678999999999999999999998888887 3433333 2233221110 112210
Q ss_pred hhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcC-CCCCHHHHHHHHHHHHHHHh
Q 000565 236 EIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV-PDKDWSVRIAAMQRVEGLVL 314 (1418)
Q Consensus 236 ~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~-~~~dW~~R~~AL~~L~~ll~ 314 (1418)
. . + ..| .+.++....... ++.-|+ .|..++.
T Consensus 1195 r----------~--------------------------~----~~e-~ealDt~R~s~aksspmme-------Ti~~ci~ 1226 (1702)
T KOG0915|consen 1195 R----------L--------------------------I----NIE-TEALDTLRASAAKSSPMME-------TINKCIN 1226 (1702)
T ss_pred h----------h--------------------------h----hhH-HHHHHHHHHhhhcCCcHHH-------HHHHHHH
Confidence 0 0 0 000 012333332222 233332 2333331
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 000565 315 GGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCI 394 (1418)
Q Consensus 315 ~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al 394 (1418)
..|+..+.+.+..+...+...++ +.+.| -+...|..|+..+|.++.||..-++..|+-.+.|.+..++.+-..|+
T Consensus 1227 --~iD~~vLeelip~l~el~R~sVg-l~Tkv--g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1227 --YIDISVLEELIPRLTELVRGSVG-LGTKV--GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred --hhhHHHHHHHHHHHHHHHhccCC-CCcch--hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 12233222222223333333332 22222 14567778899999999999999999999999999999999999999
Q ss_pred HHHHHhCCcc---chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcC
Q 000565 395 KTMLRNCKAV---RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVAD 460 (1418)
Q Consensus 395 ~~i~~~~~~~---~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~D 460 (1418)
..++...... +++..+..-.- .|-...+...|..+..+.....+ .+..+.+.+.+.+.-..++
T Consensus 1302 G~L~k~Ss~dq~qKLie~~l~~~l-~k~es~~siscatis~Ian~s~e--~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1302 GYLAKFSSPDQMQKLIETLLADLL-GKDESLKSISCATISNIANYSQE--MLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHh-ccCCCccchhHHHHHHHHHhhHH--HHHhhHHHHHHHHHHHHhH
Confidence 9999888763 44444333221 22222233333444434444432 4556677777777554444
No 40
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.37 E-value=0.0012 Score=78.38 Aligned_cols=433 Identities=13% Similarity=0.116 Sum_probs=251.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHHh-h-h-------
Q 000565 5 LELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVD-CCLDLLKDNNFKVSQGALQSLASAAVLS-G-E------- 74 (1418)
Q Consensus 5 l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~-~l~~~l~DsN~~V~~~al~~l~~l~~~l-~-~------- 74 (1418)
++.-+..|-...-+++-+|.++..-.++-+ ...+...+- ....+++..|-+|...+++.+..+++.- . .
T Consensus 227 ceatq~~d~e~q~aafgCl~kim~LyY~fm-~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 227 CEATQGNDEELQHAAFGCLNKIMMLYYKFM-QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred ehhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 344455666777778888888876554433 233443333 3457899999999999999998877541 1 0
Q ss_pred --------hHHHHHhhhHHHHHHHhCCCCh-------HHHHHHHHHHHHHHHHhChhHHHHHHh---hhhhhcCChHHHH
Q 000565 75 --------HFKLHFNALVPAVVERLGDAKQ-------PVRDAARRLLLTLMEVSSPTIIVERAG---SYAWTHRSWRVRE 136 (1418)
Q Consensus 75 --------~~~~~~~~ilp~LleklgD~k~-------~Vr~~a~~~L~~l~e~~~p~~v~e~ll---~~~~~~KnprVr~ 136 (1418)
+-+..+..++|.|+..|..+.+ .+.-+|..||..+.+.++.. +++.++ +..+.+.+|+-|+
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nre 384 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANRE 384 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHH
Confidence 1123467799998877643211 35677888888888876443 333333 3467889999999
Q ss_pred HHHHHHHHHHhhcCCCcchh---hhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHH
Q 000565 137 EFARTVTSAIGLFSATELTL---QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINA 213 (1418)
Q Consensus 137 ~~l~~l~~~l~~fg~~~l~l---~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~ 213 (1418)
..+-.+.++++ |+....+ ....+|.+...+.|+---|++.+.+|++.|..++...+.+.. ++.+..-..+..
T Consensus 385 aavmAfGSvm~--gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~---Hl~~~vsa~liG 459 (858)
T COG5215 385 AAVMAFGSVMH--GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCG---HLVLEVSASLIG 459 (858)
T ss_pred HHHHHhhhhhc--CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccc---cccHHHHHHHhh
Confidence 99999988775 5543222 246777888888999999999999999999888765543333 343332222221
Q ss_pred HHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCcc--ccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhh
Q 000565 214 RLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPK--AKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGS 291 (1418)
Q Consensus 214 ~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~--~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~ 291 (1418)
++.. | .+.... ++..- ..... ..+ ..++.. + .+-..+.++.++.
T Consensus 460 ----l~D~-p---------------------~~~~ncsw~~~nl--v~h~a-~a~--~~~~S~-l--~~fY~ai~~~Lv~ 505 (858)
T COG5215 460 ----LMDC-P---------------------FRSINCSWRKENL--VDHIA-KAV--REVESF-L--AKFYLAILNALVK 505 (858)
T ss_pred ----hhcc-c---------------------hHHhhhHHHHHhH--HHhhh-hhh--ccccch-h--HHHHHHHHHHHHH
Confidence 1110 0 000000 00000 00000 000 000000 0 0111122333332
Q ss_pred hcC-CCCCHHHHHHHHHHHHHHHhcCCC---C-cchHHH-HHHHHHHHH---Hhhh--cc--ccHHHHHHHHHHHHHHHH
Q 000565 292 TLV-PDKDWSVRIAAMQRVEGLVLGGAA---D-HPCFRG-LLKQLVGPL---STQL--SD--RRSSIVKQACHLLCFLSK 358 (1418)
Q Consensus 292 ~l~-~~~dW~~R~~AL~~L~~ll~~~~~---~-~~~f~~-~L~~L~~~L---~~~l--~D--~rs~V~~~A~~~l~~La~ 358 (1418)
.-. ...+..-|..+...|..++.-... + ...|+. .++.|-.++ ...+ .| +-..|...-|.+|..+..
T Consensus 506 ~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir 585 (858)
T COG5215 506 GTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIR 585 (858)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 356778899999999888853221 1 112222 122222222 1111 12 122355556788888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCC------ccchHHHHHHHhhhCCCHHHHHHHHHHHH
Q 000565 359 ELLGDFEACAEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNCK------AVRVLPRIADCAKNDRNAVLRARCCEYAL 431 (1418)
Q Consensus 359 ~lg~~f~~~~~~llp~Ll~~~~~~-~~vi~~sa~~al~~i~~~~~------~~~llp~l~~~l~~~Kn~~vR~~~~e~L~ 431 (1418)
..+.+.++..+.+|.-+++.+..+ ..++-+....+|..+....+ .++++|+++..+ +.-...+-..+..+.+
T Consensus 586 ~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvg 664 (858)
T COG5215 586 TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVG 664 (858)
T ss_pred hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHH
Confidence 888888888998998888888776 34556677788887776553 378999999988 5544455555567777
Q ss_pred HHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHH
Q 000565 432 LVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRR 486 (1418)
Q Consensus 432 ~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ 486 (1418)
.+....+.. +..+.+.+...+..++...... |..-.++.++|++-|-.
T Consensus 665 dlantl~~d--f~~y~d~~ms~LvQ~lss~~~~-----R~lKPaiLSvFgDIAla 712 (858)
T COG5215 665 DLANTLGTD--FNIYADVLMSSLVQCLSSEATH-----RDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHhcChhhc-----cccchHHHHHHHHHHHH
Confidence 777777653 3344556666666666654321 23333444555554433
No 41
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=0.00014 Score=92.48 Aligned_cols=364 Identities=19% Similarity=0.221 Sum_probs=212.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
.+.+...+..-..|..|++.+..+++-..... ...+.+.+.+.....|.++.+.....+.+..+...++. ...-..
T Consensus 280 ~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~ 355 (759)
T KOG0211|consen 280 TLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQ 355 (759)
T ss_pred HHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCccc
Confidence 34455555666777777777777766543221 23445666666777777777777777777776665555 233334
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC----hhHHHHHHh---hhhhhcCChHHHHHHHHHHHHHHhhcCCCcch
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSS----PTIIVERAG---SYAWTHRSWRVREEFARTVTSAIGLFSATELT 155 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~----p~~v~e~ll---~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~ 155 (1418)
..+....-++|....+|.++..-...++...+ +......++ .....+.|..||......+......+|....
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t- 434 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT- 434 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC-
Confidence 55666666777777777777766666666544 322222221 1245567777777776666655555554322
Q ss_pred hhhhhHHHHHHhcCCCChhHHHHHHHHHHHH---HHhcChh-----HHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCC
Q 000565 156 LQRAILPPILQMLNDPNPGVREAAILCIEEM---YTYAGPQ-----FRDELHRHNLPNSMVKDINARLERIQPQIRSSDG 227 (1418)
Q Consensus 156 l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l---~~~~G~~-----l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~ 227 (1418)
+ ..++|.+...+.|-.++||..-+..+..+ ..+.|-. +...+. .+.+.....+..+|-+..+...
T Consensus 435 i-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~--el~~d~~wRvr~ail~~ip~la---- 507 (759)
T KOG0211|consen 435 I-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV--ELAEDLLWRVRLAILEYIPQLA---- 507 (759)
T ss_pred c-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh--hhccchhHHHHHHHHHHHHHHH----
Confidence 2 56777777777787888877777444222 2233321 111111 1111111111111111000000
Q ss_pred CCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 000565 228 LPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQ 307 (1418)
Q Consensus 228 ~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~ 307 (1418)
...| ..++. +.+..+......+.....|..+..
T Consensus 508 -------------------------------~q~~-----------~~~~~-----~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 508 -------------------------------LQLG-----------VEFFD-----EKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred -------------------------------Hhhh-----------hHHhh-----HHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0000 00100 113344444446778889999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHH
Q 000565 308 RVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIA 387 (1418)
Q Consensus 308 ~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~ 387 (1418)
.+..++...+..+.. ..++.-+.....+.+-.+......++..|++.+|..| +.+.++|.+.....|....||
T Consensus 541 ~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 541 NLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVR 613 (759)
T ss_pred HhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhh
Confidence 999998644343432 3344444444444466677778889999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcc----chHHHHHHHhhhCCCHHHHHHHHHHHHHH
Q 000565 388 ESSDNCIKTMLRNCKAV----RVLPRIADCAKNDRNAVLRARCCEYALLV 433 (1418)
Q Consensus 388 ~sa~~al~~i~~~~~~~----~llp~l~~~l~~~Kn~~vR~~~~e~L~~i 433 (1418)
-.+..-+..+......+ .|.|.+. .+..+.+.++|..+...+..+
T Consensus 614 ~nvak~L~~i~~~L~~~~~~~~v~pll~-~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 614 INVAKHLPKILKLLDESVRDEEVLPLLE-TLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHH-HhccCcccchhHHHHHHHHHH
Confidence 88888888888877752 3444443 343566666776655544443
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00047 Score=83.33 Aligned_cols=390 Identities=16% Similarity=0.193 Sum_probs=222.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhc-ccChHhHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHhhhhHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRK-SLTSAEVTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHFKLH 79 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~-~~~~~~~~~lv~~l~~~l~-DsN~~V~~~al~~l~~l~~~l~~~~~~~ 79 (1418)
+..++.+.|.+-..+..+.+.+.+++..... .++......+++.+...+. +.|+.++..|--+|..++.+..+.-+..
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 4567889999999999999999999876442 1111111233445555564 7789999999999999987644444443
Q ss_pred Hh-hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC--hhH-----HHHHHhhhhhhcCCh-HHHHHHHHHHHHHHhhcC
Q 000565 80 FN-ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS--PTI-----IVERAGSYAWTHRSW-RVREEFARTVTSAIGLFS 150 (1418)
Q Consensus 80 ~~-~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~--p~~-----v~e~ll~~~~~~Knp-rVr~~~l~~l~~~l~~fg 150 (1418)
+. ..+|.++..+..+.+.|++.|.++|-.++.... .+. +++.|+. .+....+ ..... +.|..+-+-...
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~-~l~~~~~~~~lRn-~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR-LLNKSDKLSMLRN-ATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH-HhccccchHHHHH-HHHHHHHHHcCC
Confidence 33 467888999999999999999999999875321 122 2444554 2333333 22222 444443333222
Q ss_pred --CCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCC
Q 000565 151 --ATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGL 228 (1418)
Q Consensus 151 --~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~ 228 (1418)
...++..++++|.+..++.+.+++|..-|+.++..|-....+.+...+. -++-+.+..-| .. +.+.
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~-~gvv~~LV~lL----~~------~~~~- 294 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID-AGVVPRLVDLL----GH------SSPK- 294 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-ccchHHHHHHH----cC------CCcc-
Confidence 2223323789999999999999999999999999887666665555443 13323222211 10 0000
Q ss_pred CCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 000565 229 PNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQR 308 (1418)
Q Consensus 229 ~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~ 308 (1418)
...+.. |. .| +|.+..|. .
T Consensus 295 ---v~~PaL--------Ra-------------iG------------NIvtG~d~-------------------------Q 313 (514)
T KOG0166|consen 295 ---VVTPAL--------RA-------------IG------------NIVTGSDE-------------------------Q 313 (514)
T ss_pred ---cccHHH--------hh-------------cc------------ceeeccHH-------------------------H
Confidence 000000 00 00 00000110 0
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhccchHHH
Q 000565 309 VEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSKELLGDFEACAE-MFIPVLFKLVVITVLVI 386 (1418)
Q Consensus 309 L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-D~rs~V~~~A~~~l~~La~~lg~~f~~~~~-~llp~Ll~~~~~~~~vi 386 (1418)
.+.++..+ +++.|...+. .....+.++||=+|+.|.-+-....+..++ .++|.|++.+...-.-+
T Consensus 314 Tq~vi~~~-------------~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 314 TQVVINSG-------------ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred HHHHHhcC-------------hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 01111111 1112222233 344558889999999998865555556555 49999999998887778
Q ss_pred HHHHHHHHHHHHHhCCc--------cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccc--cccHHHHHH----
Q 000565 387 AESSDNCIKTMLRNCKA--------VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEI--QRSADLYED---- 452 (1418)
Q Consensus 387 ~~sa~~al~~i~~~~~~--------~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l--~~~~~~l~~---- 452 (1418)
+..|.-||.-+...... .-+|+.+.+.+ .-+...+=..+.+.|..+++.-...... ...-..+++
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL 459 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence 87777777655443332 23566666666 4556666666777777766542221111 111112222
Q ss_pred -HHHHHhcCCChHHHHHHHHHHHHHHHHchhH
Q 000565 453 -LIRCCVADAMSEVRSTARMCYRMFAKTWPER 483 (1418)
Q Consensus 453 -~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~ 483 (1418)
-|-.+-.-.+ .....+||..+.++|+++
T Consensus 460 dkiE~LQ~hen---~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 460 DKIENLQSHEN---EEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred hHHHHhhcccc---HHHHHHHHHHHHHhcCCC
Confidence 1222333333 445556666667777765
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.12 E-value=0.01 Score=74.54 Aligned_cols=374 Identities=14% Similarity=0.120 Sum_probs=223.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHH-HHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHh-Chh
Q 000565 39 VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL-HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS-SPT 116 (1418)
Q Consensus 39 ~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~-~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~-~p~ 116 (1418)
...+...+..++..++..|...++..++.++........- .-..+++.++..++|....|.+.|..+|..++... ..+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 3455666778899999999999999998887553332222 22568999999999999999999999999998642 122
Q ss_pred HH-----HHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhh--hhhHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 000565 117 II-----VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQ--RAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1418)
Q Consensus 117 ~v-----~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~--k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~ 189 (1418)
.+ ...|.. .+.+.|.-+|..++..+..+... ....+... ..+++.++..|.+.+.-||-.|.+++.+|..
T Consensus 155 ~l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 155 QLFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 23 334433 45555778888788877765432 22222221 3489999999999999999999999999987
Q ss_pred cChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccc
Q 000565 190 AGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEK 269 (1418)
Q Consensus 190 ~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~ 269 (1418)
.+.-..+|.+.++ ++.|...+..... +..
T Consensus 232 -~~~g~~yL~~~gi----~~~L~~~l~~~~~-----dp~----------------------------------------- 260 (503)
T PF10508_consen 232 -TPHGLQYLEQQGI----FDKLSNLLQDSEE-----DPR----------------------------------------- 260 (503)
T ss_pred -ChhHHHHHHhCCH----HHHHHHHHhcccc-----CCc-----------------------------------------
Confidence 4444566654333 3333333321100 000
Q ss_pred cCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHH
Q 000565 270 LIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQA 349 (1418)
Q Consensus 270 ~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A 349 (1418)
...+.+.+.- .-+..+... ....+...+..+...+...+..........|
T Consensus 261 -~~~~~l~g~~---~f~g~la~~--------------------------~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 261 -LSSLLLPGRM---KFFGNLARV--------------------------SPQEVLELYPAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred -ccchhhhhHH---HHHHHHHhc--------------------------ChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 0000000000 001111100 0011111122233333344455666777788
Q ss_pred HHHHHHHHHHh-hh-----hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc---cch---HH---------
Q 000565 350 CHLLCFLSKEL-LG-----DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA---VRV---LP--------- 408 (1418)
Q Consensus 350 ~~~l~~La~~l-g~-----~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~---~~l---lp--------- 408 (1418)
+.+++.|+... |. .+.+.++.++..+.....+.+.-++-.+..|+..|+..-.. ..+ ..
T Consensus 311 ~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 311 FDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 99999988544 22 22345566777777777777778899999999998754432 111 11
Q ss_pred ----HHHHHhhhCCCHHHHHHHHHHHHHHHH-hCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhH
Q 000565 409 ----RIADCAKNDRNAVLRARCCEYALLVLE-HWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER 483 (1418)
Q Consensus 409 ----~l~~~l~~~Kn~~vR~~~~e~L~~il~-~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~ 483 (1418)
.+.+.+ +..=|.+|..+..+|.-+.. .|+.. .+.. .+-+.+.+..--.|.+.++++.=..+...+..... .
T Consensus 391 ~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg~~-~i~~-~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~-~ 466 (503)
T PF10508_consen 391 PLSNLLMSLL-KQPFPELRCAAYRLLQALAAQPWGQR-EICS-SPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST-N 466 (503)
T ss_pred chHHHHHHHh-cCCchHHHHHHHHHHHHHhcCHHHHH-HHHh-CccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc-c
Confidence 444444 34458999998888876554 47653 2211 23456666666677788888887777777775544 1
Q ss_pred HHHHhccCCHHHHHHHhhh
Q 000565 484 SRRLFSSFDPAIQRIINEE 502 (1418)
Q Consensus 484 a~~ll~~Ld~~~qk~L~~~ 502 (1418)
+..++ -++.+...|+++
T Consensus 467 ~~~~~--~~~~~~~kL~~y 483 (503)
T PF10508_consen 467 ASSVF--DDPEYLGKLQEY 483 (503)
T ss_pred hhhcC--CCHHHHHHHHHH
Confidence 22221 234444456654
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.01 Score=73.32 Aligned_cols=436 Identities=15% Similarity=0.145 Sum_probs=235.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+++.+.|.+.+-..+++|+..|..++... .++..++..+.+.+...|..|.....--|..+++.-++ +.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G------~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-----LA 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG------KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-----LA 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-----ce
Confidence 46777888889999999999999988642 24678888888889999999999888777777765222 11
Q ss_pred hh-HHHHHHHhCCCChHHHHHHHHHHHHHHH-HhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhh
Q 000565 82 AL-VPAVVERLGDAKQPVRDAARRLLLTLME-VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA 159 (1418)
Q Consensus 82 ~i-lp~LleklgD~k~~Vr~~a~~~L~~l~e-~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ 159 (1418)
.+ +..+-.-|+|+++-+|..|..+|..+-- .+.| ++-..++.+..+-+|.||..+..+|..+.. ...-.. .+
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP--I~llAIk~~~~D~s~yVRk~AA~AIpKLYs---Ld~e~k-~q 180 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP--IMLLAIKKAVTDPSPYVRKTAAHAIPKLYS---LDPEQK-DQ 180 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhcCCcHHHHHHHHHhhHHHhc---CChhhH-HH
Confidence 11 1222233899999999999888776532 2223 222223458889999999999988876443 222222 47
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHHHHHh----cChhHHHhhhc-CCCC---HHHHHHHHHHHHHhCCCCCCCCCCC--
Q 000565 160 ILPPILQMLNDPNPGVREAAILCIEEMYTY----AGPQFRDELHR-HNLP---NSMVKDINARLERIQPQIRSSDGLP-- 229 (1418)
Q Consensus 160 ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~----~G~~l~~~L~~-~~l~---~~~l~~l~~~f~~~~~~~~~~~~~~-- 229 (1418)
++..+-++|.|..+-|-.+|..++.++|-. +++-+++.-.- .++. +..+-.+..++.+.+--.|....+.
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 888999999999999999999999888743 33333322210 0222 2222223344444321111111000
Q ss_pred -CcchhhhhhcccCCCCCCCccccCCCc-----cccc-CCC-CCcccccCCC-ccccChHHHHHH---------------
Q 000565 230 -NTFAALEIKTASFNPKKSSPKAKSSTR-----ETSL-FGG-EDITEKLIEP-IKVYSEKELIRE--------------- 285 (1418)
Q Consensus 230 -~~~~~~~~r~~s~~~~r~~~~~~s~~~-----~~~~-~g~-~~~~~~~v~~-i~i~s~~dl~~~--------------- 285 (1418)
.++..+.. .-.++.+..-..-+--+ ..+. ... +.+--.-..- +++....++...
T Consensus 261 ~n~~~~~~~--~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~vq 338 (968)
T KOG1060|consen 261 DNGRSCNLK--DKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREVQ 338 (968)
T ss_pred cCccccccc--ccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcch
Confidence 00000000 00000000000000000 0000 000 0000000000 000000000000
Q ss_pred ---------H--------HHhhhhc-C-CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHH
Q 000565 286 ---------F--------EKIGSTL-V-PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIV 346 (1418)
Q Consensus 286 ---------l--------~~i~~~l-~-~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~ 346 (1418)
| +.-++.| . ..+--...+=-|+.|..|+... + +..+++-|..-+++.-..++
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es-----n----i~~ILrE~q~YI~s~d~~fa 409 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES-----N----ISEILRELQTYIKSSDRSFA 409 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc-----c----HHHHHHHHHHHHhcCchhHH
Confidence 0 0011111 1 1111222222233343333211 1 34455555556666555799
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCcc--chHHHHHHHhhhCCCHHHHH
Q 000565 347 KQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV--RVLPRIADCAKNDRNAVLRA 424 (1418)
Q Consensus 347 ~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~--~llp~l~~~l~~~Kn~~vR~ 424 (1418)
..|.+.|+.+|...+. ....||..|+.++.+....|...+...|+.+++.-... ++|-++...+.+-+.|..|.
T Consensus 410 a~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA 485 (968)
T KOG1060|consen 410 AAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARA 485 (968)
T ss_pred HHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 9999999999998874 46678888999998887778888899999999877653 57777777775566777777
Q ss_pred HHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000565 425 RCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRM 475 (1418)
Q Consensus 425 ~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~ 475 (1418)
.+ .|++..+-.. +-+..+.+..-+.+...|-..+||-..-..-..
T Consensus 486 ~I----iWLige~~e~--vpri~PDVLR~laksFs~E~~evKlQILnL~aK 530 (968)
T KOG1060|consen 486 GI----IWLIGEYCEI--VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAK 530 (968)
T ss_pred ee----eeeehhhhhh--cchhchHHHHHHHHhhccccchhhHHHHHhhhh
Confidence 43 2333222110 112233344444455566666666555444333
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.08 E-value=0.0053 Score=77.06 Aligned_cols=377 Identities=15% Similarity=0.126 Sum_probs=226.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVD-CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~-~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+.++.|..+ ..|++.+.+++..+.... .+..+.. .+...+++.|......++++|..++... .......
T Consensus 7 ~~l~~l~~~--~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~ 76 (503)
T PF10508_consen 7 ELLEELSSK--AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSNREQVELICDILKRLLSAL--SPDSLLP 76 (503)
T ss_pred HHHHHHhcc--cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHH
Confidence 345555555 678888888888776422 1222221 1445677888888899999999988654 2222256
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHH-------hChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC-Cc
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEV-------SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA-TE 153 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~-------~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~-~~ 153 (1418)
.+.+.|..-|....+.||..+...|..+.+. .....++..++. ++.+.+-.|...++..|..+...... ..
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~-~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ-CLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH-HHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 6677788888889999999999988877653 223445666665 89999999999999998877653211 10
Q ss_pred chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcch
Q 000565 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFA 233 (1418)
Q Consensus 154 l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~ 233 (1418)
+ +...++..+..++..++..||-.+.++++.+.++-.+.+ ......|+
T Consensus 156 l-~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgl------------------------------ 203 (503)
T PF10508_consen 156 L-FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGL------------------------------ 203 (503)
T ss_pred H-hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccH------------------------------
Confidence 1 002337888888888899999999998888865433221 11110000
Q ss_pred hhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 000565 234 ALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLV 313 (1418)
Q Consensus 234 ~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll 313 (1418)
++.+...+.+ +|=-.|+.+++.|..+.
T Consensus 204 ----------------------------------------------------l~~ll~eL~~-dDiLvqlnalell~~La 230 (503)
T PF10508_consen 204 ----------------------------------------------------LDLLLKELDS-DDILVQLNALELLSELA 230 (503)
T ss_pred ----------------------------------------------------HHHHHHHhcC-ccHHHHHHHHHHHHHHH
Confidence 2333333322 44445566666666555
Q ss_pred hcCCCCcchHHH---HHHHHHHHHHhhhccc--cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHH
Q 000565 314 LGGAADHPCFRG---LLKQLVGPLSTQLSDR--RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAE 388 (1418)
Q Consensus 314 ~~~~~~~~~f~~---~L~~L~~~L~~~l~D~--rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~ 388 (1418)
.... .. .|+. .+..|...+...-.|. +.-++--.+...+.++..-...+-.....++..|++.+......++.
T Consensus 231 ~~~~-g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 231 ETPH-GL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred cChh-HH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 4111 11 1111 2333333333333333 33333333355555555422333334456777777777777888999
Q ss_pred HHHHHHHHHHHhCCcc------------chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHH--------
Q 000565 389 SSDNCIKTMLRNCKAV------------RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSAD-------- 448 (1418)
Q Consensus 389 sa~~al~~i~~~~~~~------------~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~-------- 448 (1418)
.|..++..|....... .++..+.... ......+|.++...|..++..-... .-+....
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYES 386 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHH
Confidence 9999998887544322 2333444444 2344679999999999998654431 0000000
Q ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 449 ----LYEDLIRCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 449 ----~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
.....+...+.-+=+|+|-+|-..+.++..+
T Consensus 387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 1111566677888899999999999887765
No 46
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.2 Score=65.43 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=153.8
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHH
Q 000565 288 KIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFR-GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEA 366 (1418)
Q Consensus 288 ~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~-~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~ 366 (1418)
.+.+.+....+-..|..+-+.|..++..... ..|. +++.++...|.+.+.+.-+......|.|+..|.+.++..+..
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~--~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSG--EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH
Confidence 5555566666788999999999998875211 1233 467888899999999999999999999999999999977777
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh--C---C---------------------------------------
Q 000565 367 CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRN--C---K--------------------------------------- 402 (1418)
Q Consensus 367 ~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~--~---~--------------------------------------- 402 (1418)
+....+|.++-.+++-+.--|..+..||..|..+ . +
T Consensus 735 ~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 735 LIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 7777777666666766666777777777777611 1 0
Q ss_pred ----------ccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 000565 403 ----------AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMC 472 (1418)
Q Consensus 403 ----------~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a 472 (1418)
...+|..+...+ .++++.|+..+..++..++..++.. .+..+++.|.+.+...+.|-...+|...|..
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~-~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEE-CLSPHLEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHH-HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 123444444555 5778999999999999999999865 5667888899999999999999999999999
Q ss_pred HHHHHHHch-hHHHHHhccCC
Q 000565 473 YRMFAKTWP-ERSRRLFSSFD 492 (1418)
Q Consensus 473 ~~~l~~~~p-~~a~~ll~~Ld 492 (1418)
|..|.+.|+ ++.+.++...+
T Consensus 893 lekLirkfg~~eLe~~~pee~ 913 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLPEED 913 (1176)
T ss_pred HHHHHHHhCHHHHHhhCHHHH
Confidence 999988885 55677776333
No 47
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.82 E-value=0.00069 Score=83.12 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=151.2
Q ss_pred CHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhcccc
Q 000565 1186 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDV 1264 (1418)
Q Consensus 1186 ~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l-~d~~~~vr~~aL~~L~~l~~~~~~~ 1264 (1418)
.+..+++.....++ +..|..+++.+..+++.-... +.++.++..+...+ .......|..++.++..+.+.+-.|
T Consensus 190 ll~~l~~~~~~~~~--~~~~~~~~~~la~LvNK~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSED--EFSRLAALQLLASLVNKWPDD---DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 45666666655553 579999999998888873222 14566666666666 3345557888999999999887777
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh---------------hhHHHhhhhhcc----ccchhhHHH
Q 000565 1265 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP---------------FRCLSVIVPLLV----TEDEKTLVT 1325 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p---------------~~~l~~l~~~l~----s~~~~~~~~ 1325 (1418)
-.+....++.++++.+.| +++...|-.+...++.-.+. ++++..+.|.|. ..+...+..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 788888999999999999 57777777777777644111 134444444443 222235777
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHH
Q 000565 1326 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQL 1395 (1418)
Q Consensus 1326 alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~ 1395 (1418)
.+..|..++++.|...+..+++.++|-|.++++-.+.+|+.++..++..+-..-.+-+.+|+..|=+.-+
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999877776665567788887655433
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.034 Score=69.08 Aligned_cols=250 Identities=18% Similarity=0.251 Sum_probs=148.5
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhH-H--HHHH
Q 000565 46 CLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI-I--VERA 122 (1418)
Q Consensus 46 l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~-v--~e~l 122 (1418)
|+.+++..+-.....|+.-|..++.+ |++ +..+.|.++......+..|+....--|+.++|.- |+. + +..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~-G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLALLSInt- 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK-GKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLALLSINT- 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc-CCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCceeeeHHH-
Confidence 34455555556667777766665533 333 6677888888888888899999999999999963 321 1 111
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCC
Q 000565 123 GSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHN 202 (1418)
Q Consensus 123 l~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~ 202 (1418)
++.+++++|+.+|..++..+..+ ..--+...++-.+.+|..|+.+-||..|..++-.+|..
T Consensus 113 fQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL------------- 173 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL------------- 173 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-------------
Confidence 23489999999999999888652 11011133455677889999999999999999999954
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHH
Q 000565 203 LPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKEL 282 (1418)
Q Consensus 203 l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl 282 (1418)
.+.+-.+|..-++++..+.. +.. -+... .. ++ .+=|-++ +=+
T Consensus 174 -d~e~k~qL~e~I~~LLaD~s--plV-----------------vgsAv-------------~A-F~-evCPerl---dLI 215 (968)
T KOG1060|consen 174 -DPEQKDQLEEVIKKLLADRS--PLV-----------------VGSAV-------------MA-FE-EVCPERL---DLI 215 (968)
T ss_pred -ChhhHHHHHHHHHHHhcCCC--Ccc-----------------hhHHH-------------HH-HH-HhchhHH---HHh
Confidence 22333333333444322211 100 00000 00 00 0111111 112
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCC-------------------------CCcc-hHHHHHHHHHHHHHh
Q 000565 283 IREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGA-------------------------ADHP-CFRGLLKQLVGPLST 336 (1418)
Q Consensus 283 ~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~-------------------------~~~~-~f~~~L~~L~~~L~~ 336 (1418)
-....+++..|..=.+|.. +-.+..|-..++..- ..+| .-.+-++.|....+.
T Consensus 216 HknyrklC~ll~dvdeWgQ-vvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkp 294 (968)
T KOG1060|consen 216 HKNYRKLCRLLPDVDEWGQ-VVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKP 294 (968)
T ss_pred hHHHHHHHhhccchhhhhH-HHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccH
Confidence 2334555555544467853 344444544443110 0122 112346778888888
Q ss_pred hhccccHHHHHHHHHHHHHHHHHh
Q 000565 337 QLSDRRSSIVKQACHLLCFLSKEL 360 (1418)
Q Consensus 337 ~l~D~rs~V~~~A~~~l~~La~~l 360 (1418)
.+...|..|+..+|+++-++|...
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHH
Confidence 899999999999999999988765
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.74 E-value=0.00025 Score=67.70 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCC
Q 000565 1204 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 1283 (1418)
Q Consensus 1204 ~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~ 1283 (1418)
.|+.+|-.|+.+...-+.. +.++|+.|+..++..+.|.+..||..|++.|-.|++..+..+-+|+..++..|...+.|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4788998888776655544 778999999999999999999999999999999999998899899999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 000565 1284 VPKVSNEAEHCLTV 1297 (1418)
Q Consensus 1284 ~~~V~~aA~~al~~ 1297 (1418)
...|+.+|+..-+.
T Consensus 81 d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAAELLDRL 94 (97)
T ss_pred chhHHHHHHHHHHH
Confidence 99999999765554
No 50
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.004 Score=75.49 Aligned_cols=303 Identities=15% Similarity=0.203 Sum_probs=192.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHh-Chh-------HHHHHHhhhhh-hcCChHHHHHHHHHHHHHHhhcCCC-c
Q 000565 84 VPAVVERLGDAKQPVRDAARRLLLTLMEVS-SPT-------IIVERAGSYAW-THRSWRVREEFARTVTSAIGLFSAT-E 153 (1418)
Q Consensus 84 lp~LleklgD~k~~Vr~~a~~~L~~l~e~~-~p~-------~v~e~ll~~~~-~~KnprVr~~~l~~l~~~l~~fg~~-~ 153 (1418)
++.+++++...+...+-.+...+..+.... .|. .++.++.. ++ .+.+|.++.++.-+|..+..--... .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~-~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVE-FLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHH-HHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 566666665555544555555555554321 121 23555555 45 4778999999998888766411111 1
Q ss_pred chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcch
Q 000565 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFA 233 (1418)
Q Consensus 154 l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~ 233 (1418)
.-+..-.+|.++.||..++.+||+.|..+|+.+.... +.++.+.-..++
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-~~~Rd~vl~~g~------------------------------ 195 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-PDCRDYVLSCGA------------------------------ 195 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-hHHHHHHHhhcc------------------------------
Confidence 1111357899999999999999999999998875332 223332221111
Q ss_pred hhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 000565 234 ALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLV 313 (1418)
Q Consensus 234 ~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll 313 (1418)
+..++..+..+..-.....+.-.|..|+
T Consensus 196 ----------------------------------------------------l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 196 ----------------------------------------------------LDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred ----------------------------------------------------hHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1111111111111223333444677777
Q ss_pred hcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhccchHHHHHHHHH
Q 000565 314 LGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEM-FIPVLFKLVVITVLVIAESSDN 392 (1418)
Q Consensus 314 ~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~-llp~Ll~~~~~~~~vi~~sa~~ 392 (1418)
.+.. ..+.|. .+..+++.|...+......|...||-+|.+|+..--...+-.++. ++|.|.++++.....+...|..
T Consensus 224 rgk~-P~P~~~-~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 224 RGKN-PSPPFD-VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred cCCC-CCCcHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 6653 233333 267788888888888889999999999999997765555556664 8999999999988778888888
Q ss_pred HHHHHHHhCCc-------cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccH-HHHHHHHHHHhcCCChH
Q 000565 393 CIKTMLRNCKA-------VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSA-DLYEDLIRCCVADAMSE 464 (1418)
Q Consensus 393 al~~i~~~~~~-------~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~-~~l~~~l~~~l~Dad~e 464 (1418)
++.-|+..... ..++|.|...+.++....+|.++|=.+..|..--.. .++..+ ..+.+.|..++..++-+
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~--qiqaVida~l~p~Li~~l~~~ef~ 379 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE--QIQAVIDANLIPVLINLLQTAEFD 379 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH--HHHHHHHcccHHHHHHHHhccchH
Confidence 88887765542 467888888775566677999887776665542211 111111 24667888899999999
Q ss_pred HHHHHHHHHH
Q 000565 465 VRSTARMCYR 474 (1418)
Q Consensus 465 VR~~Ar~a~~ 474 (1418)
+|+.|.-|+.
T Consensus 380 ~rKEAawaIs 389 (514)
T KOG0166|consen 380 IRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHHH
Confidence 9988765554
No 51
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.64 E-value=0.01 Score=69.42 Aligned_cols=192 Identities=18% Similarity=0.238 Sum_probs=143.8
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCC-hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcc--c
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND-HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--D 1263 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~-~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~--~ 1263 (1418)
+.+.+..+.+++ ...|.+||..|..++.... .+.+.+++..|+..++..++-.+...+..|++++.-++-.+| .
T Consensus 45 L~~~Id~l~eK~---~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS---SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 556666666664 6799999999999998776 455666789999999999976555677788899999988876 5
Q ss_pred cccccHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHH--hhcChhh---HHHhhhhh-----cccc----------chh
Q 000565 1264 VMEDSVEIVIEKLLHVTKDAVP--KVSNEAEHCLTVVL--SQYDPFR---CLSVIVPL-----LVTE----------DEK 1321 (1418)
Q Consensus 1264 ~~~~~~e~~l~~ll~~~~d~~~--~V~~aA~~al~~i~--~~~~p~~---~l~~l~~~-----l~s~----------~~~ 1321 (1418)
..+..++.+.|.|...+.|... .+|.++..|+-.+. ....+.. ++..+.-+ +..+ +..
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 5667788888888888887653 45566666665433 2333332 22333311 1111 234
Q ss_pred hHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 000565 1322 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1381 (1418)
Q Consensus 1322 ~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~ 1381 (1418)
...+||..-..|+..++...+...+...+|.|...++..+.+||.+|=.++.-+|-...+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 677888999999999998788888899999999999999999999999999999977764
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.045 Score=68.40 Aligned_cols=439 Identities=17% Similarity=0.197 Sum_probs=225.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTS-LVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~-lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+++..+.+.++-++.-||-.+.-++.. ..++.- +...+.+-++.+|.-|+-.||-+|+.++.. + .+.
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE------~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---E---mar 141 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDE------RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---E---MAR 141 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhcc------chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---H---HhH
Confidence 567788899999988899888877763 233333 345567788999999999999999998632 2 344
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHh---hhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhh
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAG---SYAWTHRSWRVREEFARTVTSAIGLFSATELTLQR 158 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll---~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k 158 (1418)
.+.|-+-+.+...++.||.+|.-|+..++... |+ .++.++ ...+..|+.-|-.+.+..+.++++. +...+...+
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~-l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr 218 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PD-LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFR 218 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-ch-HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHH
Confidence 56788778889999999999999999999763 32 233332 1356678887777777777777654 222222224
Q ss_pred hhHHHHHHhcCC---------------CChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCC
Q 000565 159 AILPPILQMLND---------------PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIR 223 (1418)
Q Consensus 159 ~ll~~l~~lL~D---------------~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~ 223 (1418)
.+++.++..|.+ ++|=..-. +..+.+.+|.. +.-....|..|.+..........
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----iLrlLriLGq~-------d~daSd~M~DiLaqvatntdssk 287 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----ILRLLRILGQN-------DADASDLMNDILAQVATNTDSSK 287 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH----HHHHHHHhcCC-------CccHHHHHHHHHHHHHhcccccc
Confidence 555555544421 11111000 11111222211 00011233333333221100000
Q ss_pred CCCCCCCcchhhhhhcccCCCCCCCcc--ccCCCcc------cccCCCCCcccccC------CCccccChHHHHHHHHHh
Q 000565 224 SSDGLPNTFAALEIKTASFNPKKSSPK--AKSSTRE------TSLFGGEDITEKLI------EPIKVYSEKELIREFEKI 289 (1418)
Q Consensus 224 ~~~~~~~~~~~~~~r~~s~~~~r~~~~--~~s~~~~------~~~~g~~~~~~~~v------~~i~i~s~~dl~~~l~~i 289 (1418)
..|..--|.. ++.... -.++-+. +......+...+-+ .-++. ++...+..=..|
T Consensus 288 -N~GnAILYE~----------V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~-d~~avqrHr~tI 355 (866)
T KOG1062|consen 288 -NAGNAILYEC----------VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ-DPTAVQRHRSTI 355 (866)
T ss_pred -cchhHHHHHH----------HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcC-CcHHHHHHHHHH
Confidence 0000000000 000000 0000000 00001000000000 00111 111111111223
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000565 290 GSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAE 369 (1418)
Q Consensus 290 ~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~ 369 (1418)
++.| .|.|-..|..||+.+-.++.+.. .....++|+..|...=.|.+..++. -|..++ ..|.|.=.
T Consensus 356 leCL-~DpD~SIkrralELs~~lvn~~N-----v~~mv~eLl~fL~~~d~~~k~~~as----~I~~la----EkfaP~k~ 421 (866)
T KOG1062|consen 356 LECL-KDPDVSIKRRALELSYALVNESN-----VRVMVKELLEFLESSDEDFKADIAS----KIAELA----EKFAPDKR 421 (866)
T ss_pred HHHh-cCCcHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHhccHHHHHHHHH----HHHHHH----HhcCCcch
Confidence 3333 56777888888887777775332 2222344444444432233333222 222333 34556666
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHH-hhhCCCHHHHHHHHHHHHHHHHhCCCCc
Q 000565 370 MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-------VRVLPRIADC-AKNDRNAVLRARCCEYALLVLEHWPDAP 441 (1418)
Q Consensus 370 ~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~-------~~llp~l~~~-l~~~Kn~~vR~~~~e~L~~il~~~~~~~ 441 (1418)
+++.++++.+...-.+|+..+...+..++.+... .++.-.+.+. +..--.+.+ ...+.||+-++++-
T Consensus 422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l----~qVa~W~IGEYGdl- 496 (866)
T KOG1062|consen 422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPL----LQVASWCIGEYGDL- 496 (866)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhH----HHHHHHHhhhhhHH-
Confidence 7788888888777778888887777777766622 2333333322 100111222 46788888887731
Q ss_pred cc-------------cccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchh---HHHHHhc----cCC-HHHHHHHh
Q 000565 442 EI-------------QRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPE---RSRRLFS----SFD-PAIQRIIN 500 (1418)
Q Consensus 442 ~l-------------~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~---~a~~ll~----~Ld-~~~qk~L~ 500 (1418)
.+ +..++.+++++..... +..++.+|--|+..|...|+. +.+.++. .+| .-+||.+|
T Consensus 497 ll~~~~~~~p~~vtesdivd~l~~v~~~~~s--~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 497 LLDGANEEEPIKVTESDIVDKLEKVLMSHSS--DSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred hhcCccccCCCcCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccccHHHHHHHHH
Confidence 11 1123455666555444 499999999999999998876 3444443 344 33455554
No 53
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.54 E-value=0.0094 Score=76.79 Aligned_cols=295 Identities=19% Similarity=0.235 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh----hHHHHHhhhHHHHH
Q 000565 13 TKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE----HFKLHFNALVPAVV 88 (1418)
Q Consensus 13 Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~----~~~~~~~~ilp~Ll 88 (1418)
-..|.+|++-|..+..-. .+...++.++..+..++.|+-..|+..|+++|..++...++ +..-+...++|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i---~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI---DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhc---chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 456778888777765531 22344778888888899999999999999999999866544 33446777899988
Q ss_pred HHhCC-CChHHHHHHHHHHHHHHHHhCh-hHHHHHHhhhh-hhcCChHHHHHHHHHHHHHHh-hcCCCcchhhhhhHHHH
Q 000565 89 ERLGD-AKQPVRDAARRLLLTLMEVSSP-TIIVERAGSYA-WTHRSWRVREEFARTVTSAIG-LFSATELTLQRAILPPI 164 (1418)
Q Consensus 89 eklgD-~k~~Vr~~a~~~L~~l~e~~~p-~~v~e~ll~~~-~~~KnprVr~~~l~~l~~~l~-~fg~~~l~l~k~ll~~l 164 (1418)
..+.| ....||-+-..+|-.+++...- .+....+-..+ .+..|-. ...+ .|...-..+...+-..+
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~v 583 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQMV 583 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHHHHHH
Confidence 88888 6666787777788777764211 01011111101 1111111 0000 11111112323344466
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCC
Q 000565 165 LQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNP 244 (1418)
Q Consensus 165 ~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~ 244 (1418)
..+|.|+.+.||.+=++.|+.||.++|.. .+
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------------ks-------------------- 614 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKE-----------------------------KS-------------------- 614 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhc-----------------------------cc--------------------
Confidence 78999999999999999999999887742 00
Q ss_pred CCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHH
Q 000565 245 KKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFR 324 (1418)
Q Consensus 245 ~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~ 324 (1418)
+ |+ .+..++ ++.+|+||.-|.+-.+.|..+..- .+....
T Consensus 615 -------------------N----------------D~--iLshLi-TfLNDkDw~LR~aFfdsI~gvsi~--VG~rs~- 653 (1431)
T KOG1240|consen 615 -------------------N----------------DV--ILSHLI-TFLNDKDWRLRGAFFDSIVGVSIF--VGWRSV- 653 (1431)
T ss_pred -------------------c----------------cc--hHHHHH-HHhcCccHHHHHHHHhhccceEEE--EeeeeH-
Confidence 0 00 133333 345678999999999888754321 011110
Q ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc
Q 000565 325 GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF-EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA 403 (1418)
Q Consensus 325 ~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f-~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~ 403 (1418)
=..|++.|.+.+.|.-..|+..|+.++..|.+.- -| .++...++...+=.+..-+..||.++..-|.++.+..+.
T Consensus 654 --seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 654 --SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred --HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 1235566678899999999999999999998742 12 246777788777788889999999999888888888764
Q ss_pred ----cchHHHHHHHh
Q 000565 404 ----VRVLPRIADCA 414 (1418)
Q Consensus 404 ----~~llp~l~~~l 414 (1418)
-+++|.|-..+
T Consensus 730 advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 730 ADVYCKLMPLIRPFL 744 (1431)
T ss_pred hhheEEeehhhHHhh
Confidence 35666665544
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0084 Score=74.70 Aligned_cols=347 Identities=17% Similarity=0.193 Sum_probs=176.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh-hHHHHHhhh
Q 000565 5 LELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE-HFKLHFNAL 83 (1418)
Q Consensus 5 l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~-~~~~~~~~i 83 (1418)
...+.+++--.|..+.-.+.++...... ...-..|++.|...+.|+|+.|+..|+.++..+.+.-.. ..-.....+
T Consensus 127 ~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~ 203 (734)
T KOG1061|consen 127 LKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQL 203 (734)
T ss_pred HHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHH
Confidence 4444555555555555555555432211 111246778888888999999999999999999876442 222233455
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHh--ChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhH
Q 000565 84 VPAVVERLGDAKQPVRDAARRLLLTLMEVS--SPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAIL 161 (1418)
Q Consensus 84 lp~LleklgD~k~~Vr~~a~~~L~~l~e~~--~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll 161 (1418)
+..+++++.+-.+.-+-...++|..+.-.- ..+.+++++.. .+.|-|+.|.-..++.+...++.+..-.-.+.+.+-
T Consensus 204 ~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p-~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~ 282 (734)
T KOG1061|consen 204 INKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTP-RLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVA 282 (734)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhh-hhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666665544433333334443333211 11246666665 688888888777777776665544320000113333
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhccc
Q 000565 162 PPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTAS 241 (1418)
Q Consensus 162 ~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s 241 (1418)
+.++.++.-.. ++--.|..=+..+.....+-+...+. .|
T Consensus 283 ~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~-------------------------------~F--------- 321 (734)
T KOG1061|consen 283 PPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIK-------------------------------VF--------- 321 (734)
T ss_pred ccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhH-------------------------------ee---------
Confidence 33333332222 33332222222221111110000000 00
Q ss_pred CCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 000565 242 FNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHP 321 (1418)
Q Consensus 242 ~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~ 321 (1418)
+-+--+|+.+ +.+-++.+..++.. .
T Consensus 322 -------------------------f~kynDPiYv-------------------------K~eKleil~~la~~-----~ 346 (734)
T KOG1061|consen 322 -------------------------FCKYNDPIYV-------------------------KLEKLEILIELAND-----A 346 (734)
T ss_pred -------------------------eeecCCchhh-------------------------HHHHHHHHHHHhhH-----h
Confidence 0000122322 11111122222210 1
Q ss_pred hHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Q 000565 322 CFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC 401 (1418)
Q Consensus 322 ~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~ 401 (1418)
+ +.++..-|+.-..+..-+.+++++.+|+.+|-..-.. ..++..|++.+.-+...+.+.+...++.+++++
T Consensus 347 n----l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 347 N----LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred H----HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 1 2333444444556667778888888888888776432 567777777777665556667777888888888
Q ss_pred Cc--cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHH
Q 000565 402 KA--VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRS 467 (1418)
Q Consensus 402 ~~--~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~ 467 (1418)
.- ..+++.+.....+=-+|..|. ++.|++.++... ++. ...+.+.+.+...|-.++|+-
T Consensus 418 P~~~~~vv~~l~~~~~sl~epeak~----amiWilg~y~~~--i~~-a~elL~~f~en~~dE~~~Vql 478 (734)
T KOG1061|consen 418 PNKYESVVAILCENLDSLQEPEAKA----ALIWILGEYAER--IEN-ALELLESFLENFKDETAEVQL 478 (734)
T ss_pred CCchhhhhhhhcccccccCChHHHH----HHHHHHhhhhhc--cCc-HHHHHHHHHhhcccchHHHHH
Confidence 64 567777766654435677776 455555555432 111 122333334444444455543
No 55
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.081 Score=66.33 Aligned_cols=207 Identities=18% Similarity=0.266 Sum_probs=131.1
Q ss_pred CHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhh-cccChHhHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhhhhHH
Q 000565 1 MEEALELARAK-DTKERMAGVERLHQLLEASR-KSLTSAEVTSLVDCCLDLLKD-NNFKVSQGALQSLASAAVLSGEHFK 77 (1418)
Q Consensus 1 ~e~~l~~l~s~-~Wk~R~~ale~L~~~l~~~~-~~~~~~~~~~lv~~l~~~l~D-sN~~V~~~al~~l~~l~~~l~~~~~ 77 (1418)
|..++++|+.. |--..++++.+|-+++.-.. ..++.-.+..++..|..++++ .|+-+...|+.+|..+++.++.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34678888876 88888999999988775432 233333467888888888875 7999999999999999999877655
Q ss_pred HHHh-hhHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHhChhHHHH-----HHhh--hhhhcCChHHHHHHHHHHHHHHhh
Q 000565 78 LHFN-ALVPAVVERLGDAK-QPVRDAARRLLLTLMEVSSPTIIVE-----RAGS--YAWTHRSWRVREEFARTVTSAIGL 148 (1418)
Q Consensus 78 ~~~~-~ilp~LleklgD~k-~~Vr~~a~~~L~~l~e~~~p~~v~e-----~ll~--~~~~~KnprVr~~~l~~l~~~l~~ 148 (1418)
..+. ..+|.+++||---. --|-|.+.++|..+.... |..++. .++. ..|. -.+...++.+..++...
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG~l~a~LsylDFFS---i~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAGALSAVLSYLDFFS---IHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 4443 47899999985422 124444555555554432 222211 1111 1221 12222334444455555
Q ss_pred cCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc--ChhHHHhhhcCCCCHHHHHHHHHHH
Q 000565 149 FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA--GPQFRDELHRHNLPNSMVKDINARL 215 (1418)
Q Consensus 149 fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~--G~~l~~~L~~~~l~~~~l~~l~~~f 215 (1418)
.....+.+.-..+|.+..+|...+..+-+.+.-|+..+...+ |+.....|-.+ .+++++.+.+
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~----dLi~~~~qLl 389 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH----DLITNIQQLL 389 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch----hHHHHHHHHH
Confidence 555555443578999999999999999999998888887655 34444444433 3355554443
No 56
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.47 E-value=0.00042 Score=73.10 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=88.1
Q ss_pred hhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH---H
Q 000565 1300 SQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI---Y 1376 (1418)
Q Consensus 1300 ~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~---~ 1376 (1418)
..++....|++...+|+..+.|-+..|.+.+..++++.+.+-+.++||.+++.|.+|++.++++|..++.+||..+ .
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3456667899999999888888899999999999988777889999999999999999999999999999999999 9
Q ss_pred HHhhhcccccccccChHHHHHHHHHHHh
Q 000565 1377 IMLGKAFLPYLERLNSTQLRLVTIYANR 1404 (1418)
Q Consensus 1377 ~~lg~~~~p~l~~L~~s~~kll~~yi~r 1404 (1418)
..+|+++.||+.+| +-.+++|.++
T Consensus 112 ~~vG~aLvPyyrqL----Lp~ln~f~~k 135 (183)
T PF10274_consen 112 DMVGEALVPYYRQL----LPVLNLFKNK 135 (183)
T ss_pred hhhhHHHHHHHHHH----HHHHHHHHhc
Confidence 99999999998877 3456666554
No 57
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.46 E-value=0.0014 Score=62.75 Aligned_cols=93 Identities=24% Similarity=0.246 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCC
Q 000565 15 ERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDA 94 (1418)
Q Consensus 15 ~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~ 94 (1418)
.|..|+-.|..+....+..+ ...+..+++-+...+.|.+++|+..|+++|..+++..+..+-.|+..+++.|...+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 58889999988876655432 45577788888889999999999999999999999988888889999999999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 000565 95 KQPVRDAARRLLLTL 109 (1418)
Q Consensus 95 k~~Vr~~a~~~L~~l 109 (1418)
.+.||..| +.|..+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999888 444443
No 58
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.45 E-value=0.011 Score=69.08 Aligned_cols=203 Identities=18% Similarity=0.130 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 000565 280 KELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFR-GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSK 358 (1418)
Q Consensus 280 ~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~-~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~ 358 (1418)
.++++.+...+..+ .++.=+.|.+||+.|..++.... ..+|+ .....|...+.+.++--++.=...|+.+++.++-
T Consensus 39 ~~~e~~L~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 39 EDLEDKLKEAIDLL-TEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLAL 115 (309)
T ss_pred hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 45555555555554 35668899999999999986432 12444 3456778888888876666667789999999999
Q ss_pred Hhh--hhHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHhCCc-----c---chHHHHHH--HhhhC-------
Q 000565 359 ELL--GDFEACAEMFIPVLFKLVVITVL--VIAESSDNCIKTMLRNCKA-----V---RVLPRIAD--CAKND------- 417 (1418)
Q Consensus 359 ~lg--~~f~~~~~~llp~Ll~~~~~~~~--vi~~sa~~al~~i~~~~~~-----~---~llp~l~~--~l~~~------- 417 (1418)
.+| ..-+...+.+.|.|...+.+... .+|.++..||..+.-.++. . ..|..++. ..+.+
T Consensus 116 tlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 116 TLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCccccc
Confidence 988 45566788899999888877642 3556666666554443332 1 23442221 12212
Q ss_pred --CCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHH
Q 000565 418 --RNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRR 486 (1418)
Q Consensus 418 --Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ 486 (1418)
.++.+...+......++...+.. .+...+....+.+..+|.-.|.+||-+|-+++..++....+..+.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~-~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~ 265 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDS-KLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED 265 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 13566666666666677666653 233344556677778899999999999999999998887654333
No 59
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.32 E-value=0.53 Score=59.83 Aligned_cols=179 Identities=21% Similarity=0.205 Sum_probs=118.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-------------
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAV------------- 70 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~------------- 70 (1418)
++.++.++.-..|..|+..+.++++-.... .-..++..+..--.|.-|.+++.+-.++..-..
T Consensus 477 ~~~rClDkaaavR~~al~s~tk~l~l~~~~----~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 477 VYMRCLDKAAAVRLHALNSLTKILQLQSHR----EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhccc----chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 456778899999999999999998764322 123444444444455666666555544432100
Q ss_pred --------HhhhhHH----HHHhhhHHHHHHHhC-CCChHHHHHHHHHHHHHHHHhChhHHHHH---HhhhhhhcCChHH
Q 000565 71 --------LSGEHFK----LHFNALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSPTIIVER---AGSYAWTHRSWRV 134 (1418)
Q Consensus 71 --------~l~~~~~----~~~~~ilp~Lleklg-D~k~~Vr~~a~~~L~~l~e~~~p~~v~e~---ll~~~~~~KnprV 134 (1418)
.-++... ..-..++--|+.++. |.|..|+..+...|..+...+.....++. |++..-++...-|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 0001111 123345666777786 99999999999999998877655544444 3333445666677
Q ss_pred HHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 135 REEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 135 r~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
|...+..|..++.. .+..+++++.++-.++..+.|.+..|-+.|+.++-.+.
T Consensus 633 rk~~~~Sltel~~~-~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 633 RKTGADSLTELMLR-DPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHhh-CchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88888888776543 33345566889999999999999999999999776554
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.075 Score=60.02 Aligned_cols=385 Identities=15% Similarity=0.176 Sum_probs=202.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHH-----HHHHhhcc-cchHHHHHHHHHHHHHHHHhhhh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVD-----CCLDLLKD-NNFKVSQGALQSLASAAVLSGEH 75 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~-----~l~~~l~D-sN~~V~~~al~~l~~l~~~l~~~ 75 (1418)
+++..+|.|.|....++|.-.+.+++..... +.++.+++ -+..++.+ .+-.....|-=+|..++.+-...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~----PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETS----PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccC----CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 4677889999999999999999999876431 11222222 12223322 22233344555666665442222
Q ss_pred HHHHH-hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC--hhH-----HHHHHhhhhhhcCChHHHHHHHHHHHHHHh
Q 000565 76 FKLHF-NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS--PTI-----IVERAGSYAWTHRSWRVREEFARTVTSAIG 147 (1418)
Q Consensus 76 ~~~~~-~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~--p~~-----v~e~ll~~~~~~KnprVr~~~l~~l~~~l~ 147 (1418)
-+..+ ..-+|.++..|.+..+.||+.+.++|-.++.-.. -+. +++.++.....++.----..-+.|..+-+.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 11111 1357899999999999999999999988764210 112 344555422223321111223455554333
Q ss_pred hcCCCc----chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCC
Q 000565 148 LFSATE----LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIR 223 (1418)
Q Consensus 148 ~fg~~~----l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~ 223 (1418)
. |... -.+ ...+|.+.+++-..+++|---|+.++..|..-..+.+...|. -+.++-+++.|.. +
T Consensus 230 R-GknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs~---------~ 297 (526)
T COG5064 230 R-GKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSH---------E 297 (526)
T ss_pred C-CCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhcC---------c
Confidence 2 3322 123 678999999999999999989998887765433333333332 1222222221110 0
Q ss_pred CCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHH
Q 000565 224 SSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRI 303 (1418)
Q Consensus 224 ~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~ 303 (1418)
+.. ...+..| .. +....| .|.. ..--.+.
T Consensus 298 sa~-----iqtPalR--------~v---------GNIVTG----------------~D~Q-------------TqviI~~ 326 (526)
T COG5064 298 SAK-----IQTPALR--------SV---------GNIVTG----------------SDDQ-------------TQVIINC 326 (526)
T ss_pred ccc-----ccCHHHH--------hh---------cCeeec----------------Cccc-------------eehheec
Confidence 000 0000000 00 000000 0000 0000112
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhccc
Q 000565 304 AAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAE-MFIPVLFKLVVIT 382 (1418)
Q Consensus 304 ~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~-~llp~Ll~~~~~~ 382 (1418)
.+|..++.| +...+..+.++||=+|..|--.--......++ .++|.|++++..-
T Consensus 327 G~L~a~~~l-------------------------Ls~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 327 GALKAFRSL-------------------------LSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred ccHHHHHHH-------------------------hcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 222222222 44555678899999998875544444545555 4899999999887
Q ss_pred hHHHHHHHHHHHHHHHHhC-CccchHHHHHH---------Hh--hhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHH
Q 000565 383 VLVIAESSDNCIKTMLRNC-KAVRVLPRIAD---------CA--KNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLY 450 (1418)
Q Consensus 383 ~~vi~~sa~~al~~i~~~~-~~~~llp~l~~---------~l--~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l 450 (1418)
-..++..|.=|+.-...++ +-+.+|.+|.+ .+ ...|-+.+-.-|.+++..+-+.|.... ......+
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~--~~nin~y 459 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRY--GKNINIY 459 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhc--cCCccHH
Confidence 7778777666654433333 22444443332 22 134567777777777777666664321 1111122
Q ss_pred H---------HHHHHHhcCCChHHHHHHHHHHHHHHHHchhH
Q 000565 451 E---------DLIRCCVADAMSEVRSTARMCYRMFAKTWPER 483 (1418)
Q Consensus 451 ~---------~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~ 483 (1418)
. ++|..|-+. .-|..-.+||..+..+|+++
T Consensus 460 a~~vE~Aggmd~I~~~Q~s---~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 460 AVYVEKAGGMDAIHGLQDS---VNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred HHHHHhcccHHHHHHhhhc---cccHHHHHHHHHHHHHcccc
Confidence 2 233333322 34666778888888888876
No 61
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=1.3 Score=54.92 Aligned_cols=366 Identities=18% Similarity=0.208 Sum_probs=203.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVT-SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~-~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
++.++.|.+.++.++.=|+--+.-+++.+ .++. .++..+++-+...|..-+..||.|++.+-.+ +.-..+.
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n------~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~ 148 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNEN------SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA 148 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcc------hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh
Confidence 56788999999999999999988888742 2333 3445667788889999999999999987432 2222333
Q ss_pred hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhh
Q 000565 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAI 160 (1418)
Q Consensus 81 ~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~l 160 (1418)
.. +|-|+ .-++..+-||++|.-||+.+.+. +|+. ++. ..+
T Consensus 149 ~D-I~KlL-vS~~~~~~vkqkaALclL~L~r~-spDl------------------------------------~~~-~~W 188 (938)
T KOG1077|consen 149 DD-IPKLL-VSGSSMDYVKQKAALCLLRLFRK-SPDL------------------------------------VNP-GEW 188 (938)
T ss_pred hh-hHHHH-hCCcchHHHHHHHHHHHHHHHhc-Cccc------------------------------------cCh-hhH
Confidence 33 23222 24788888888888888888765 2321 111 245
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcc-hhhhhhc
Q 000565 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTF-AALEIKT 239 (1418)
Q Consensus 161 l~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~-~~~~~r~ 239 (1418)
...++.+|+|.+-.|-.+|..++..|.+...+.....+. -.+..|..-.-.. + . +-+.-.| ..+.
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~------~avs~L~riv~~~-~--t--~~qdYTyy~vP~--- 254 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP------LAVSRLSRIVVVV-G--T--SLQDYTYYFVPA--- 254 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH------HHHHHHHHHHhhc-c--c--chhhceeecCCC---
Confidence 566667777777777777777777777777665444332 1122221111100 0 0 0000000 0000
Q ss_pred ccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcC---CCCCHHHHHHH---HHHHHHHH
Q 000565 240 ASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV---PDKDWSVRIAA---MQRVEGLV 313 (1418)
Q Consensus 240 ~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~---~~~dW~~R~~A---L~~L~~ll 313 (1418)
| ....+-. +--... + ..++ + .+...+.+.++.|+.... .+++-+.+.+- |-+.-.++
T Consensus 255 ----P---WL~vKl~-rlLq~~--p-~~~D---~---~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 255 ----P---WLQVKLL-RLLQIY--P-TPED---P---STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred ----h---HHHHHHH-HHHHhC--C-CCCC---c---hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 0 0000000 000000 0 0000 0 011223333444444332 23333333221 11122222
Q ss_pred hcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhc-cchHHHHHHHH
Q 000565 314 LGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEA-CAEMFIPVLFKLVV-ITVLVIAESSD 391 (1418)
Q Consensus 314 ~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~-~~~~llp~Ll~~~~-~~~~vi~~sa~ 391 (1418)
.. .|.+ .+.+..-+..|.+-+.+....+.-.|++.+..|+.. .|.+ .++.-...++..++ +..-.||..|.
T Consensus 318 ~h--~D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrrav 390 (938)
T KOG1077|consen 318 IH--LDSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAV 390 (938)
T ss_pred HH--cCCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 11 1211 112344445555666677777778888888888875 3322 12223445566666 55556898898
Q ss_pred HHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHH
Q 000565 392 NCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRC 456 (1418)
Q Consensus 392 ~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~ 456 (1418)
.-|-+|+..-..+.++..++..+ .+-.+.+|...+-=..++.+++.++ ..=+++.+.++|+.
T Consensus 391 DLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeivlKvAILaEKyAtD--y~WyVdviLqLiri 452 (938)
T KOG1077|consen 391 DLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIVLKVAILAEKYATD--YSWYVDVILQLIRI 452 (938)
T ss_pred HHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHH
Confidence 89999988888888888888777 4567899998777777888888764 34456666666664
No 62
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.97 E-value=0.53 Score=60.67 Aligned_cols=375 Identities=13% Similarity=0.114 Sum_probs=190.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHH---H---hChhHHHHHHhhh
Q 000565 52 DNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME---V---SSPTIIVERAGSY 125 (1418)
Q Consensus 52 DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e---~---~~p~~v~e~ll~~ 125 (1418)
...-++...++.+|..+++......+-.-..+++.|+..|...+..+.-.+..+|..+.- . ..-..+++.|.+
T Consensus 260 ~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k- 338 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK- 338 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH-
Confidence 344566677888899888776555555557788899988876666566666666666541 1 112245677776
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCCCcc-h-hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc-ChhHHHhhhcCC
Q 000565 126 AWTHRSWRVREEFARTVTSAIGLFSATEL-T-LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA-GPQFRDELHRHN 202 (1418)
Q Consensus 126 ~~~~KnprVr~~~l~~l~~~l~~fg~~~l-~-l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~-G~~l~~~L~~~~ 202 (1418)
.+..++..++..++..|.++- |....- . +.--++|.++.+|.|++ .|..|..+ +|... .+..+..+...+
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~i---Ly~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDPN--FREVALKI---LYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHH---HHHhccCHhhHHHHhhcc
Confidence 678888888888888776532 222111 1 11257899999998764 55554433 44332 244555554323
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHH
Q 000565 203 LPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKEL 282 (1418)
Q Consensus 203 l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl 282 (1418)
--|..++.+.. . +.... ..+.-.. .. ..... . .-.++....
T Consensus 412 cIp~L~~~Ll~----~----~~~~v------~~eliaL----------~i-------NLa~~---~---rnaqlm~~g-- 452 (708)
T PF05804_consen 412 CIPQLMQMLLE----N----SEEEV------QLELIAL----------LI-------NLALN---K---RNAQLMCEG-- 452 (708)
T ss_pred hHHHHHHHHHh----C----CCccc------cHHHHHH----------HH-------HHhcC---H---HHHHHHHhc--
Confidence 22333333321 0 00000 0000000 00 00000 0 000000000
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh--
Q 000565 283 IREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL-- 360 (1418)
Q Consensus 283 ~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~l-- 360 (1418)
..+..++... -+|+. .--|+-||.+..........|...+.+|...+.. .| .. ...++||+.|++--
T Consensus 453 -~gL~~L~~ra---~~~~D-~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~--~~-~e---e~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 453 -NGLQSLMKRA---LKTRD-PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS--GD-SE---EFVVECLGILANLTIP 521 (708)
T ss_pred -CcHHHHHHHH---Hhccc-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc--CC-cH---HHHHHHHHHHHhcccC
Confidence 0022222111 11222 1233455555443322223466666666655432 22 33 34566677666643
Q ss_pred hhhHHHHHH--HHHHHHHHHhccchH--HHHHHHHHHHHHHHHh--C----CccchHHHHHHHhhhCCC--HHHHHHHHH
Q 000565 361 LGDFEACAE--MFIPVLFKLVVITVL--VIAESSDNCIKTMLRN--C----KAVRVLPRIADCAKNDRN--AVLRARCCE 428 (1418)
Q Consensus 361 g~~f~~~~~--~llp~Ll~~~~~~~~--vi~~sa~~al~~i~~~--~----~~~~llp~l~~~l~~~Kn--~~vR~~~~e 428 (1418)
+.+|...+. .++|.|.+.+..... -+.-.+...+.+++.. | .-..+++.+.+.+ +.|. -.+-..++-
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL-~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELL-NAKQEDDEIVLQILY 600 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHH-HhhCchHHHHHHHHH
Confidence 447888876 599999998865421 1222223333333321 1 1146778887777 3444 333333444
Q ss_pred HHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHH
Q 000565 429 YALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRR 486 (1418)
Q Consensus 429 ~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ 486 (1418)
.+..++..-.+...+-.. ..+...+..++.|.|++||+.|-.|+..+..+-++-+.+
T Consensus 601 ~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 601 VFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444444332111011111 234566778999999999999999999998875554443
No 63
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.092 Score=64.26 Aligned_cols=290 Identities=16% Similarity=0.109 Sum_probs=156.7
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHH
Q 000565 117 IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRD 196 (1418)
Q Consensus 117 ~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~ 196 (1418)
.++..+.. ...+..++||..+++.+..+-+ |. .+.+.+....++.+.|.+.+||.+|.+++...-.........
T Consensus 198 ~~~~~l~~-~~~~~D~~Vrt~A~eglL~L~e--g~---kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIY-LEHDQDFRVRTHAVEGLLALSE--GF---KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHH-HhcCCCcchHHHHHHHHHhhcc--cc---cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34444443 5667889999999998877555 33 344688999999999999999999999887766554322111
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccc
Q 000565 197 ELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKV 276 (1418)
Q Consensus 197 ~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i 276 (1418)
+-.. .+.+.+.|.++=.. -.|.+-. +|- .+ ....|..+ ++
T Consensus 272 e~~e-------~kl~D~aF~~vC~~--v~D~sl~--------------VRV-~A-------aK~lG~~~---------~v 311 (823)
T KOG2259|consen 272 ESEE-------EKLKDAAFSSVCRA--VRDRSLS--------------VRV-EA-------AKALGEFE---------QV 311 (823)
T ss_pred hhhh-------hhhHHHHHHHHHHH--HhcCcee--------------eee-hH-------HHHhchHH---------Hh
Confidence 1111 11222333322000 0011000 000 00 01222210 01
Q ss_pred cChHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHHHH---hcCC--CCcc--hHHH----HH-HHHHHHHHhhhccccH
Q 000565 277 YSEKELIREFEK-IGSTLVPDKDWSVRIAAMQRVEGLV---LGGA--ADHP--CFRG----LL-KQLVGPLSTQLSDRRS 343 (1418)
Q Consensus 277 ~s~~dl~~~l~~-i~~~l~~~~dW~~R~~AL~~L~~ll---~~~~--~~~~--~f~~----~L-~~L~~~L~~~l~D~rs 343 (1418)
|+.=+...++| ++..+ .-|+.-.+.=+.+.+-. .|.. .+.+ .... .+ ..-+.+|...+.|-=-
T Consensus 312 -See~i~QTLdKKlms~l---RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~ 387 (823)
T KOG2259|consen 312 -SEEIIQQTLDKKLMSRL---RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY 387 (823)
T ss_pred -HHHHHHHHHHHHHhhhh---hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence 33333333433 33322 33443333333222111 0000 0110 0000 00 0012333444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHhhhCCCHHH
Q 000565 344 SIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVL 422 (1418)
Q Consensus 344 ~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~-~~llp~l~~~l~~~Kn~~v 422 (1418)
.|.+.|...+..||..- ++| +...+-.|...+.|.-.++|--|..+|..|..|... ...++.+++.+ .+.++++
T Consensus 388 EVR~AAV~Sl~~La~ss-P~F---A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L-~D~s~dv 462 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSS-PGF---AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESL-EDRSVDV 462 (823)
T ss_pred HHHHHHHHHHHHHHcCC-CCc---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHH-HhcCHHH
Confidence 45556777777777654 444 777788899999999999999999999999999776 58899999999 6889999
Q ss_pred HHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCCh
Q 000565 423 RARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS 463 (1418)
Q Consensus 423 R~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~ 463 (1418)
|...-++|..+ ++.+...+...+..+.+.+.+.=+|.|.
T Consensus 463 Re~l~elL~~~--~~~d~~~i~m~v~~lL~~L~kyPqDrd~ 501 (823)
T KOG2259|consen 463 REALRELLKNA--RVSDLECIDMCVAHLLKNLGKYPQDRDE 501 (823)
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhCCCCcHH
Confidence 99665555432 2332212222334444555555566543
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.90 E-value=0.085 Score=68.49 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHhh---hhhhcCChHHHHHHHHHHHHHHhhc---CCCcch-hhhhhHHHHHHhcCC
Q 000565 98 VRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLF---SATELT-LQRAILPPILQMLND 170 (1418)
Q Consensus 98 Vr~~a~~~L~~l~e~~~p~~v~e~ll~---~~~~~KnprVr~~~l~~l~~~l~~f---g~~~l~-l~k~ll~~l~~lL~D 170 (1418)
.|-+|.+.|..+...++.+..++++++ ..+.+.-++||..++.+|..++... ...... +.+-++|.+..++.|
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 567788888888887776666676664 3677888999999999999887643 222211 225689999999999
Q ss_pred -CChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCc
Q 000565 171 -PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSP 249 (1418)
Q Consensus 171 -~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~ 249 (1418)
.+.-||-+=..+|..+.... ..||. +..++... ..-..+.+.+
T Consensus 519 ~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~--g~~n~~nset------------------- 562 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQA--GMLNDPNSET------------------- 562 (1431)
T ss_pred CccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhc--ccccCccccc-------------------
Confidence 77788988888888776432 22222 10111100 0000010000
Q ss_pred cccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCC-CCcchHHHHHH
Q 000565 250 KAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGA-ADHPCFRGLLK 328 (1418)
Q Consensus 250 ~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~-~~~~~f~~~L~ 328 (1418)
.. .... ++ ...+|.+..+++...|..+.+--+|..-|+.|-.|+.--+ ....++
T Consensus 563 --~~--------~~~~--~~--------~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~----- 617 (1431)
T KOG1240|consen 563 --AP--------EQNY--NT--------ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV----- 617 (1431)
T ss_pred --cc--------cccc--ch--------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----
Confidence 00 0000 00 1244555566666667777777888888888777764211 222232
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCcc----
Q 000565 329 QLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV---- 404 (1418)
Q Consensus 329 ~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~---- 404 (1418)
|...|..-++|.-.++...-++.|..++--.|.. ..-+.++|-|.+.+.|.-..|...|..|+..+++.-...
T Consensus 618 -iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 -ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred -hHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 3334445567877777777777777776666643 346778999999999999999999999999999876552
Q ss_pred -chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCC
Q 000565 405 -RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDA 440 (1418)
Q Consensus 405 -~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~ 440 (1418)
.++..+.-.+ -+.|.-||+.++.++..+.+.|...
T Consensus 695 ~~i~~~v~PlL-~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 695 KDILQDVLPLL-CHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHhhhhhe-eCchHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444 5899999999999999999999764
No 65
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.86 E-value=2 Score=52.81 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=140.1
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHhhhh
Q 000565 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQL-SDRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 285 ~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l-~D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
.++.+........++..|..+++.+..++.. ..-++ .+..++..+...+ ..........++.++.-+.+++=-+
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK--~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNK--WPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcC--CCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 3555555544556699999999999988853 11111 1334444444334 4455556667888888888877555
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--------C-----------ccchHHHHHHHhhhCCCHHHHH
Q 000565 364 FEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC--------K-----------AVRVLPRIADCAKNDRNAVLRA 424 (1418)
Q Consensus 364 f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~--------~-----------~~~llp~l~~~l~~~Kn~~vR~ 424 (1418)
-++.+..++..|++.+.+.. +...+..++..++.-. + +..++|.+.+..++ .+...|.
T Consensus 265 ~~~~~~~~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~ 341 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSSPE--LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKS 341 (415)
T ss_pred CCchHHHHHHHHHHHhCChh--hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHH
Confidence 56788889999999998844 6777778887777652 1 13567888888753 3445888
Q ss_pred HHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHh
Q 000565 425 RCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLF 488 (1418)
Q Consensus 425 ~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll 488 (1418)
.....|..+++..|.. .+..+++.+.+.+..++.=.|+++|..+-+++..+...-|+-....+
T Consensus 342 ~yL~ALs~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 8888999999998865 56677888999999999999999999999999988777666555433
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.82 E-value=0.0073 Score=56.54 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=67.7
Q ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHH
Q 000565 84 VPAVVERL-GDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILP 162 (1418)
Q Consensus 84 lp~Llekl-gD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~ 162 (1418)
+|.|++.| .|....||..+..+|..+ ....+++.++. .+++++|.||..++.+|.. +|. +..++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~----i~~------~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIE-LLKDEDPMVRRAAARALGR----IGD------PEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHH-HHTSSSHHHHHHHHHHHHC----CHH------HHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHH-HHcCCCHHHHHHHHHHHHH----hCC------HHHHH
Confidence 57889988 899999999888888743 34466777776 7799999999999988854 332 57889
Q ss_pred HHHHhcCC-CChhHHHHHHHHHH
Q 000565 163 PILQMLND-PNPGVREAAILCIE 184 (1418)
Q Consensus 163 ~l~~lL~D-~~~~VR~aA~~~L~ 184 (1418)
.+..++.| .+..||.+|..+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 99998866 45677999998875
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=2.7 Score=53.31 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.++-+.|++.+--.|+.|+.++..++... +.-+..|+....+.++|++..|..+++.++..+++...+.+ .|+.
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~-----P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr 218 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKV-----PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL-SYFR 218 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-HHHH
Confidence 45677888999999999999999998742 33456778888889999999999999999999987743322 2223
Q ss_pred hhHHHHHHHh---------------------------------CCCChHHHHHHHHHHHHHHHHh------ChhHHHHHH
Q 000565 82 ALVPAVVERL---------------------------------GDAKQPVRDAARRLLLTLMEVS------SPTIIVERA 122 (1418)
Q Consensus 82 ~ilp~Llekl---------------------------------gD~k~~Vr~~a~~~L~~l~e~~------~p~~v~e~l 122 (1418)
.++|.++..| |.......+...+.|..++..+ +-..+.|.+
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 3444444433 3222223344444444444321 111223333
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHHhhcCC-------Ccc------h--hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 123 GSYAWTHRSWRVREEFARTVTSAIGLFSA-------TEL------T--LQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 123 l~~~~~~KnprVr~~~l~~l~~~l~~fg~-------~~l------~--l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
....--..|+..|+-.+++|...+..-.. ..+ + ..-.-=..++.||+|+++.+|..|++++..|.
T Consensus 299 ~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 299 RTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 32111133455566666666554422100 000 0 00011235788999999999999999887765
Q ss_pred Hh
Q 000565 188 TY 189 (1418)
Q Consensus 188 ~~ 189 (1418)
.-
T Consensus 379 n~ 380 (866)
T KOG1062|consen 379 NE 380 (866)
T ss_pred cc
Confidence 43
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.78 E-value=0.0055 Score=60.65 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVT-SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~-~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
+.+++.+.+.+|..|..++..|..+....+... ..-+. .+++.+.+.+.|.|..|+..++.+|..++...........
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 457888899999999999999999886421110 01112 4566777888999999999999999999866433333333
Q ss_pred -hhhHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 000565 81 -NALVPAVVERLGDAKQPVRDAARRLLLTLME 111 (1418)
Q Consensus 81 -~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e 111 (1418)
..+++.|++.+.+.+..+++.+..+|..+++
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 3489999999999888999999999887763
No 69
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.02 Score=73.48 Aligned_cols=212 Identities=21% Similarity=0.210 Sum_probs=141.5
Q ss_pred CCCCCCCHHHHHHHhhcCCCCChhhH----HHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHH
Q 000565 1180 LTDAGPSIPQILHLMCNGNDGSPTSK----HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DAD-SSVREVALSL 1253 (1418)
Q Consensus 1180 ~~d~~~~v~~ll~~l~~~~~~~~~~r----~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~-d~~-~~vr~~aL~~ 1253 (1418)
-+|..+.+...|+++.+.... +..+ ..-|..+.++++.+......++-+..+++|-..-. |.+ .-+|..-..+
T Consensus 205 R~D~~~~~~~Fl~~~l~~~s~-~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl 283 (1133)
T KOG1943|consen 205 RTDVKDLLLSFLDWLLDCPST-ETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKL 283 (1133)
T ss_pred cccHHHHHHHHHHHhhcccch-hhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHH
Confidence 345556677788887776653 5555 56777788888887765544556666666544332 233 3466655566
Q ss_pred HHHH-HHhcccc---------------------------------------ccccHHHHHHHHHHHhcCCcHHHHHHHHH
Q 000565 1254 INEM-LKNQKDV---------------------------------------MEDSVEIVIEKLLHVTKDAVPKVSNEAEH 1293 (1418)
Q Consensus 1254 L~~l-~~~~~~~---------------------------------------~~~~~e~~l~~ll~~~~d~~~~V~~aA~~ 1293 (1418)
.+.| +-.++++ +..++|-++..|+..+.|....|+..|..
T Consensus 284 ~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAK 363 (1133)
T KOG1943|consen 284 VQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAK 363 (1133)
T ss_pred HHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHH
Confidence 6633 1111111 23678899999999999999999999999
Q ss_pred HHHHHHhhcChhhHHHhhhhhcc----ccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCC--------
Q 000565 1294 CLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS-------- 1361 (1418)
Q Consensus 1294 al~~i~~~~~p~~~l~~l~~~l~----s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~-------- 1361 (1418)
-+..+....|+.-.-.+|-.++. -.+...+.+++=.|..|..+ | =.+-..+.+++|.+.++++-.+
T Consensus 364 g~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-G-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G 441 (1133)
T KOG1943|consen 364 GLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-G-LLLPSLLEDVVPLILKALHYDVRRGQHSVG 441 (1133)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 99999999998754444433332 12233346666666666632 2 1111235677888888876544
Q ss_pred HHHHHHHHHHHHHHHHHhhh-cccccccccChHH
Q 000565 1362 ADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ 1394 (1418)
Q Consensus 1362 seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~ 1394 (1418)
..||.+|-|.+|++++.... ++.||+..|.+.-
T Consensus 442 ~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 442 QHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred cchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 45999999999999999984 8999999887764
No 70
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.72 E-value=0.12 Score=55.70 Aligned_cols=163 Identities=13% Similarity=0.243 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcC
Q 000565 1203 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 1282 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d 1282 (1418)
.-|..++-.+..+...-. ...+..+..+...|.|.++.||..|+.+|..|+..---+++ ..++..++.++.|
T Consensus 3 ~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D 74 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVD 74 (178)
T ss_pred HHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcC
Confidence 456666666655544322 23455666888999999999999999999999874333333 3345677778899
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccc----cchh-----hHHHHHHHHHHHHhhcC-HHHHHhhhhhhHHH
Q 000565 1283 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT----EDEK-----TLVTCINCLTKLVGRLS-QEELMAQLPSFLPA 1352 (1418)
Q Consensus 1283 ~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s----~~~~-----~~~~alk~l~~lv~~~~-~~~l~~~L~~l~p~ 1352 (1418)
+.++|+..|..++..+.....|..+...+..++.. ..++ ..-.-.+++..+++.+. .++-...+..++.-
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQR 154 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999887787666666666531 1111 11122345556666666 33344445555666
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 000565 1353 LFEAFGNQSADVRKTVVFCLV 1373 (1418)
Q Consensus 1353 l~~~~~d~~seVRkaAv~~lv 1373 (1418)
+..+..+.+..+-+-+.+||-
T Consensus 155 ~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 155 FLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHcccccHHHHHHHHHHHH
Confidence 665555667888888888763
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.67 Score=56.02 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhh----hCC---------------
Q 000565 358 KELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAK----NDR--------------- 418 (1418)
Q Consensus 358 ~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~----~~K--------------- 418 (1418)
+.-|-.|..++-..+.-+++...+++ +.|.+-|+.+++-|.++.+.-.|+..+. ..|
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~~~p~sk----EraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL 498 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAMENDPDSK----ERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL 498 (898)
T ss_pred hcccchHHHHHHHHHHHHHhhCchHH----HHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH
Confidence 34455677777766666776666655 6778888888888877655544443331 112
Q ss_pred -CHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000565 419 -NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFA 477 (1418)
Q Consensus 419 -n~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~ 477 (1418)
|..||..+...|....-...+. . .-..++.++++|++|+|-|||..|.-++..+.
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~-~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDV-V---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhhHHHHHHHHHHHHhccCcccc-c---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 4445665555554432222221 1 12357778899999999999999977766554
No 72
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.60 E-value=0.0029 Score=46.86 Aligned_cols=31 Identities=45% Similarity=0.805 Sum_probs=27.5
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHHHHHhc
Q 000565 160 ILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 160 ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
++|.+.++++|++++||.+|..+|+.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999998763
No 73
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=3.1 Score=52.66 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred hhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhH
Q 000565 158 RAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF 194 (1418)
Q Consensus 158 k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l 194 (1418)
.++++.+-.||.+....|--.|...++.++...+..+
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l 280 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL 280 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc
Confidence 3788899999999999999999999999988777543
No 74
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.69 Score=59.55 Aligned_cols=89 Identities=17% Similarity=0.040 Sum_probs=68.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH-HHHHH
Q 000565 293 LVPDKDWSVRIAAMQRVEGLVLGGAADHPC-FRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE-ACAEM 370 (1418)
Q Consensus 293 l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~-f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~-~~~~~ 370 (1418)
|.++++-..|++||+-+.--+.-- ..|++ |++.++..=+.+..++.+.+--++.-||.||-.+....|.-+. .+.+.
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~L-a~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLL-ATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHH-hccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 447888999999999887433211 34554 7777788778888999999999999999999999999986543 57888
Q ss_pred HHHHHHHHhccc
Q 000565 371 FIPVLFKLVVIT 382 (1418)
Q Consensus 371 llp~Ll~~~~~~ 382 (1418)
++|.|-..+.+.
T Consensus 890 vlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 890 VLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHH
Confidence 999877665543
No 75
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.39 E-value=0.005 Score=45.64 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000565 1349 FLPALFEAFGNQSADVRKTVVFCLVDIYIM 1378 (1418)
Q Consensus 1349 l~p~l~~~~~d~~seVRkaAv~~lv~~~~~ 1378 (1418)
|+|.+.+++.|++++||.+|++|+..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998865
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.30 E-value=0.027 Score=55.58 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-------hHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHh
Q 000565 1272 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1344 (1418)
Q Consensus 1272 ~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~ 1344 (1418)
+++.+++.+.|....++..|-.|+..++...+.. .+++.+.+++.+.+...+..|+..|..+....+ +....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 6778888888888899999999999888763332 477888888888888999999999999986443 32222
Q ss_pred -hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1345 -QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1345 -~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
.-..++|.+.+.+++.+.++|+.|..++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23458999999999999999999999988765
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.29 E-value=0.0085 Score=50.88 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000565 1320 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1373 (1418)
Q Consensus 1320 ~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv 1373 (1418)
|+++..|+..|+.+. +...+.+..+++.++|.|...+.|.+++||.+|.+||-
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 678899999999866 45558888999999999999999999999999999874
No 78
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.23 E-value=1 Score=58.24 Aligned_cols=327 Identities=14% Similarity=0.155 Sum_probs=171.4
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH--hChhH
Q 000565 42 LVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV--SSPTI 117 (1418)
Q Consensus 42 lv~~l~~~l~DsN~~V~~~al~~l~~l~~~--l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~--~~p~~ 117 (1418)
++..|.+.+...|..+...++.+|..+.-. ....+ .-..++|.|+.-+...+..+++.+..+|..+.-. .-...
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m--~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m 368 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEM--AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM 368 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555677778888888888888877522 11222 2335788888777777777888887777777532 11111
Q ss_pred ----HHHHHhhhhhhcCChHHHHHHHHHHHHHHhh-cCCCcchhhhhhHHHHHHhc-CCCChhHHHHHHHHHHHHHHhcC
Q 000565 118 ----IVERAGSYAWTHRSWRVREEFARTVTSAIGL-FSATELTLQRAILPPILQML-NDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 118 ----v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~-fg~~~l~l~k~ll~~l~~lL-~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
++..+.. .+.+. ..+.-++..|..+-.. -+...+.. ...+|.++.+| ..+++.|...++.++..+...-.
T Consensus 369 V~~GlIPkLv~-LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 369 VSLGLIPKLVE-LLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHCCCcHHHHH-HhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 2333333 34433 3444455555443211 01112223 45788888765 55677776666555555543221
Q ss_pred --------hhHHHhhhc--CCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccC
Q 000565 192 --------PQFRDELHR--HNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLF 261 (1418)
Q Consensus 192 --------~~l~~~L~~--~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~ 261 (1418)
..+...+.+ +.-.+-.++.|.+ + +. ..
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRN----i------------------------------S~---------h~ 481 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRN----I------------------------------SQ---------HD 481 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHH----H------------------------------Hh---------cC
Confidence 111111110 0000111111110 0 00 00
Q ss_pred CCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhcc-
Q 000565 262 GGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD- 340 (1418)
Q Consensus 262 g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D- 340 (1418)
| + ...-+.+.+..+...+...++++.-.+.|-.|..+...+ .+|..++.. ..+++.|.+.+..
T Consensus 482 ~----------~----~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~-ld~~~ll~~-~~llp~L~~~L~~g 545 (708)
T PF05804_consen 482 G----------P----LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD-LDWAQLLQE-YNLLPWLKDLLKPG 545 (708)
T ss_pred c----------h----HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC-cCHHHHHHh-CCHHHHHHHHhCCC
Confidence 0 0 001122334444444444456777777776666554321 233322211 1355555555542
Q ss_pred -ccHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhccch--HHHHHHHHHHHHHHHHhCCc-------cchHH
Q 000565 341 -RRSSIVKQACHLLCFLSKELLGDFEACAE--MFIPVLFKLVVITV--LVIAESSDNCIKTMLRNCKA-------VRVLP 408 (1418)
Q Consensus 341 -~rs~V~~~A~~~l~~La~~lg~~f~~~~~--~llp~Ll~~~~~~~--~vi~~sa~~al~~i~~~~~~-------~~llp 408 (1418)
....++-+++.+++.++.. ......+. .+++.|++++..+. .-+.-....+...++.|-.. ..+..
T Consensus 546 ~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ 623 (708)
T PF05804_consen 546 ASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPA 623 (708)
T ss_pred CCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHH
Confidence 3457888999998887753 23333332 46788877776553 22333444555555555321 35667
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 409 RIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 409 ~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
++++.+ +|||+.||+.|-..|..+.+.
T Consensus 624 ylidL~-~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 624 YLIDLM-HDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHh
Confidence 888888 899999999999999888765
No 79
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.14 Score=59.33 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=119.3
Q ss_pred ChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHH
Q 000565 1201 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI-VIEKLLHV 1279 (1418)
Q Consensus 1201 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~-~l~~ll~~ 1279 (1418)
+.+++.+||+.|..++..=+...-.-.++-+...+. .+++++..+|+.|..+|...+++.+..-+..+|. .+.+|+..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 468999999999877755332211112444444444 8889999999999999999999876543333331 55556554
Q ss_pred h-cCCcHHHHHHHHHHHHHHHhhcChhh-------HHHhhhhhccc--cchhhHHHHHHHHHHHHhhcCHHHHHhhhhhh
Q 000565 1280 T-KDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSF 1349 (1418)
Q Consensus 1280 ~-~d~~~~V~~aA~~al~~i~~~~~p~~-------~l~~l~~~l~s--~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l 1349 (1418)
+ .|....++.+|--|+-.++.+.+|-. -+.+|.+++.+ .+.+.++.++.++..+++.-..+.=. .-+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-ASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-HHHhh
Confidence 4 56668899999999999999988853 45667788876 56778888999999998766433321 11222
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Q 000565 1350 LPALFEAF-GNQSADVRKTVVFCLVDIYIMLG 1380 (1418)
Q Consensus 1350 ~p~l~~~~-~d~~seVRkaAv~~lv~~~~~lg 1380 (1418)
++.+...+ ..-+.+++.+|+.++...-..+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 23333322 35677888888887665554444
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.9 Score=56.61 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=133.8
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHH
Q 000565 117 IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRD 196 (1418)
Q Consensus 117 ~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~ 196 (1418)
.+..+++. .++|-.|-||..++..+..++..|... + ++.+|.++.=|+|++|.|-.+|..++++|.+..+..
T Consensus 144 DLa~Dv~t-LL~sskpYvRKkAIl~lykvFLkYPeA---l-r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--- 215 (877)
T KOG1059|consen 144 DLADDVFT-LLNSSKPYVRKKAILLLYKVFLKYPEA---L-RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--- 215 (877)
T ss_pred HHHHHHHH-HHhcCchHHHHHHHHHHHHHHHhhhHh---H-hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc---
Confidence 45666665 788888889988888888887777542 3 778888888999999999999999999886554321
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccc
Q 000565 197 ELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKV 276 (1418)
Q Consensus 197 ~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i 276 (1418)
+|. +.|.
T Consensus 216 yL~---LAP~---------------------------------------------------------------------- 222 (877)
T KOG1059|consen 216 YLQ---LAPL---------------------------------------------------------------------- 222 (877)
T ss_pred ccc---ccHH----------------------------------------------------------------------
Confidence 110 1111
Q ss_pred cChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHH
Q 000565 277 YSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHP-CFRGLLKQLVGPLSTQLSD-RRSSIVKQACHLLC 354 (1418)
Q Consensus 277 ~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~-~f~~~L~~L~~~L~~~l~D-~rs~V~~~A~~~l~ 354 (1418)
|=+++. ..+.||- |.+|-+|...- ..++ -+ -+.|+.+|...+.. .--.++-+.+.|+-
T Consensus 223 ---------ffkllt--tSsNNWm-----LIKiiKLF~aL-tplEPRL---gKKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 223 ---------FYKLLV--TSSNNWV-----LIKLLKLFAAL-TPLEPRL---GKKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred ---------HHHHHh--ccCCCee-----hHHHHHHHhhc-cccCchh---hhhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 111111 1235562 12222222111 1111 11 13344444433321 11122223333332
Q ss_pred HHHHHhh-hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccch---HHHHHHHhhhCCCHHHHHHHHHHH
Q 000565 355 FLSKELL-GDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRV---LPRIADCAKNDRNAVLRARCCEYA 430 (1418)
Q Consensus 355 ~La~~lg-~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~l---lp~l~~~l~~~Kn~~vR~~~~e~L 430 (1418)
......| ++-...+..++.-|=-.+-++.+...=-+..|+..|. .+|+..+ -..|+.++ .||.+.||.++.++|
T Consensus 283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~-ktHp~~Vqa~kdlIlrcL-~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL-KTHPKAVQAHKDLILRCL-DDKDESIRLRALDLL 360 (877)
T ss_pred eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh-hhCHHHHHHhHHHHHHHh-ccCCchhHHHHHHHH
Confidence 2211112 1233455667777666666666556656677776655 4565433 45677777 799999999888887
Q ss_pred HHHHHhCCCCccccccHHHHHHHHHHHhcCCCh
Q 000565 431 LLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS 463 (1418)
Q Consensus 431 ~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~ 463 (1418)
.-++.+- .+..+++.+...+.+++.
T Consensus 361 ~gmVskk--------Nl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 361 YGMVSKK--------NLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred HHHhhhh--------hHHHHHHHHHHHHHhccc
Confidence 7666542 234566677777777776
No 81
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=9.1 Score=52.03 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=85.1
Q ss_pred HHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH----hChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC
Q 000565 76 FKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV----SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 76 ~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~----~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
|...+..++..|+--++.....+|.+|..||..+.++ ..-..|.+.+.. -+.+...-||++++..+...+-.+..
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~-R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG-RLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH-hhccchhHHHHHHHHHHhhhhhccHH
Confidence 3444555667777778999999999999999999986 233355556654 57788889999999988765533211
Q ss_pred CcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 152 TELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 152 ~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
+..+|...+..-..|+.-.||+-++..+.+||.-..
T Consensus 889 ----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 889 ----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred ----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 125778888888899999999999999999997765
No 82
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.12 E-value=0.032 Score=70.55 Aligned_cols=152 Identities=18% Similarity=0.286 Sum_probs=122.6
Q ss_pred hHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Q 000565 1223 IWTK-YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 1300 (1418)
Q Consensus 1223 ~~~~-~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~-~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~ 1300 (1418)
.|.+ +|.++...+..-+......++-.=|..|.+.+.+.+.. +.+++..++|-||+++.=+...|+-.+..++..+..
T Consensus 859 LykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 859 LYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 3444 78999999888887434446777788899999988754 779999999999999998888999999999987776
Q ss_pred hcChh------hHHHhhhhhccccc---hhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000565 1301 QYDPF------RCLSVIVPLLVTED---EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1371 (1418)
Q Consensus 1301 ~~~p~------~~l~~l~~~l~s~~---~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~ 1371 (1418)
-.++- .+++.+..+=.+.+ --.|..||+||..+.++.|+..+...-|.++-+|.+.++|.+-=|||.|+.|
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 64443 35554444433334 3478999999999999999999988889999999999999999999999999
Q ss_pred HHH
Q 000565 1372 LVD 1374 (1418)
Q Consensus 1372 lv~ 1374 (1418)
==.
T Consensus 1019 R~~ 1021 (1030)
T KOG1967|consen 1019 RQN 1021 (1030)
T ss_pred hhh
Confidence 543
No 83
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.56 Score=57.76 Aligned_cols=260 Identities=19% Similarity=0.164 Sum_probs=152.0
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhH-HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcC-CC-----cch
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI-IVERAGSYAWTHRSWRVREEFARTVTSAIGLFS-AT-----ELT 155 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~-v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg-~~-----~l~ 155 (1418)
++..|+.-.+|....||..|.++|+.+.|.+.... ...+..+ .+++.+--||.++++.+.-.-+.+. .. ...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~-~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVK-HLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 44457777888888999999999999999755543 3444444 7888899999999887766555552 11 122
Q ss_pred hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHH-HHHHhCCCCCCCCCCCCcchh
Q 000565 156 LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINA-RLERIQPQIRSSDGLPNTFAA 234 (1418)
Q Consensus 156 l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~-~f~~~~~~~~~~~~~~~~~~~ 234 (1418)
+....+..++..+.|-.-.||-.|.++|+.+-....+-+.+-|.| ..+..+.. ++. ...|... |
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK-----Klms~lRRkr~a---hkrpk~l-----~-- 342 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK-----KLMSRLRRKRTA---HKRPKAL-----Y-- 342 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH-----HHhhhhhhhhhc---ccchHHH-----H--
Confidence 224567788999999999999999999998744333323333321 22221110 110 0000000 0
Q ss_pred hhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhh-----hhcC---CCCCHHHHHHHH
Q 000565 235 LEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIG-----STLV---PDKDWSVRIAAM 306 (1418)
Q Consensus 235 ~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~-----~~l~---~~~dW~~R~~AL 306 (1418)
+....++++ ..+ +++|.-.. .++-..|+ ..|. .|.-.++|.+|+
T Consensus 343 -------------s~GewSsGk---~~~------advpsee~------d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 343 -------------SSGEWSSGK---EWN------ADVPSEED------DEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred -------------hcCCcccCc---ccc------ccCchhhc------cccccccccccccceeeeechHHHHHHHHHHH
Confidence 000011000 000 11111110 01111222 2232 456688999999
Q ss_pred HHHHHHHhcCCCCcchHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHH
Q 000565 307 QRVEGLVLGGAADHPCFR-GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLV 385 (1418)
Q Consensus 307 ~~L~~ll~~~~~~~~~f~-~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~v 385 (1418)
..+-.|.... +.|- ..|.-|++.|...+.+ |.-.|+..|..|+..+. .-+..++.+++.+.|...-
T Consensus 395 ~Sl~~La~ss----P~FA~~aldfLvDMfNDE~~~----VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 395 ASLCSLATSS----PGFAVRALDFLVDMFNDEIEV----VRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVD 461 (823)
T ss_pred HHHHHHHcCC----CCcHHHHHHHHHHHhccHHHH----HHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHH
Confidence 9999998532 3332 2345566665555544 44559999999998853 3456788888888888876
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 000565 386 IAESSDNCIKTMLRNCKA 403 (1418)
Q Consensus 386 i~~sa~~al~~i~~~~~~ 403 (1418)
+|++. ..++.++.+
T Consensus 462 vRe~l----~elL~~~~~ 475 (823)
T KOG2259|consen 462 VREAL----RELLKNARV 475 (823)
T ss_pred HHHHH----HHHHHhcCC
Confidence 77654 445555554
No 84
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.08 E-value=0.16 Score=54.49 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccChHhHHHHHHH------------HHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 14 KERMAGVERLHQLLEASRKSLTSAEVTSLVDC------------CLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 14 k~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~------------l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
|.|..|+..|..+++..++..-..++..|+.. +.-.+.|++.+|+.+|+.++..+.++.+..|...-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae- 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE- 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH-
Confidence 68999999999999984444334556665532 23467899999999999999999988655544311
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcch--hhhh
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT--LQRA 159 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~--l~k~ 159 (1418)
-.+....+----+...-..+++. -..|+...-..+++.+..++++++..+++......++ +...
T Consensus 80 --------~~~~~~~sFtslS~tLa~~i~~l------H~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~ 145 (182)
T PF13251_consen 80 --------ESKGPSGSFTSLSSTLASMIMEL------HRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE 145 (182)
T ss_pred --------hcCCCCCCcccHHHHHHHHHHHH------HHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHH
Confidence 11111111111111111122211 1112221123457778889999999998876555443 2367
Q ss_pred hHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 000565 160 ILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1418)
Q Consensus 160 ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~ 189 (1418)
++..+..++.+.+++||-++..+++.+...
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888888899999999999999999888654
No 85
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.06 E-value=0.033 Score=52.04 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHHh-ccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHH
Q 000565 372 IPVLFKLV-VITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLY 450 (1418)
Q Consensus 372 lp~Ll~~~-~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l 450 (1418)
+|.|++.+ .+....+|..+..+|. ..+.+.++|.|...+ +++++.||..++..|..+- . +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~----~--------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIG----D--------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH----H--------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC----C--------HHH
Confidence 57889988 7888889988877777 556679999999999 7899999999999988652 1 223
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHH
Q 000565 451 EDLIRCCVA-DAMSEVRSTARMCYR 474 (1418)
Q Consensus 451 ~~~l~~~l~-Dad~eVR~~Ar~a~~ 474 (1418)
.+.+.+.+. |.+..||..|.++++
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 445555554 456777999988874
No 86
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.99 E-value=0.049 Score=68.97 Aligned_cols=142 Identities=17% Similarity=0.254 Sum_probs=116.1
Q ss_pred CCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc
Q 000565 1185 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 1264 (1418)
Q Consensus 1185 ~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~ 1264 (1418)
+.++.++......+ ..++..-+..|...|..-...+..+.|..++..|++.|.=++..+|..+++++..++...+.-
T Consensus 867 ~ivP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hhHHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 34566777666332 357888888888888766666677789999999999998788999999999999999988888
Q ss_pred ccccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHhhcChh-------hHHHhhhhhccccchhhHHHHHHH
Q 000565 1265 MEDSVEIVIEKLLHVTKDAV---PKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINC 1329 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~d~~---~~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~s~~~~~~~~alk~ 1329 (1418)
...|+..++|.++..-.|+. -.||..|-.|+.++.+..|+. .++..|.|.|.+++-.+|..|.+.
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 99999999999999888765 789999999999999976665 477788888877766677777764
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.16 Score=64.99 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=113.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHH
Q 000565 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAV 87 (1418)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~L 87 (1418)
+.+++-+.|.+|+..+...+... .++..++.-+.+.+...|..+....-.-|..+++.-+ ...-..++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHH
Confidence 45667888998988887776542 2355565555555556677777766666666654432 3344556777
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhh-hHHHHHH
Q 000565 88 VERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA-ILPPILQ 166 (1418)
Q Consensus 88 leklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~-ll~~l~~ 166 (1418)
..-++|.++.+|-.|..++..+-...=...++..+.+ +++|+++.||..++.++..+.+. +..- +... .+..+..
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~-~l~d~~ayVRk~Aalav~kly~l-d~~l--~~~~g~~~~l~~ 173 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKK-LLTDPHAYVRKTAALAVAKLYRL-DKDL--YHELGLIDILKE 173 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHHhc-CHhh--hhcccHHHHHHH
Confidence 7779999999999998888776543112223444444 88999999999988888766532 1111 1123 4556667
Q ss_pred hcCCCChhHHHHHHHHHHHHHHh
Q 000565 167 MLNDPNPGVREAAILCIEEMYTY 189 (1418)
Q Consensus 167 lL~D~~~~VR~aA~~~L~~l~~~ 189 (1418)
++.|++|.|-..|...|.+++.-
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 78899999999999999888876
No 88
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.92 E-value=0.012 Score=50.03 Aligned_cols=54 Identities=28% Similarity=0.247 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHH
Q 000565 55 FKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLT 108 (1418)
Q Consensus 55 ~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~ 108 (1418)
|.|...|+.+|+.++...++.++.++..++|.|+..|.|.++.||..|..+|-.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 578899999999988888889999999999999999999999999999998864
No 89
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.90 E-value=0.1 Score=53.43 Aligned_cols=110 Identities=19% Similarity=0.305 Sum_probs=82.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHH--HH
Q 000565 800 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RI 877 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~--~l 877 (1418)
....||.- +..+=.++.+.+.+ -...++.+.++|...|.+|...+|..|-.++..+|..|+..+. .+
T Consensus 14 l~~~dw~~----ileicD~In~~~~~-------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~F 82 (139)
T cd03567 14 NREEDWEA----IQAFCEQINKEPEG-------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRF 82 (139)
T ss_pred CCCCCHHH----HHHHHHHHHcCCcc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHH
Confidence 45778854 44455555554432 2467889999999999999999999999999999999975553 45
Q ss_pred HHHHHHhhC------CCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHh
Q 000565 878 LPHVFSRLI------DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 920 (1418)
Q Consensus 878 l~~l~~klg------D~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l 920 (1418)
+..|++.+. .....|+.++.+++..|.+.|+.+..+...+..|
T Consensus 83 l~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 83 LNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 555555553 2467899999999999999998666555555554
No 90
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.90 E-value=0.051 Score=58.12 Aligned_cols=133 Identities=22% Similarity=0.319 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhcc-ccccccHHHHHHHH-----------HH-HhcCCcHHHHHHHHHHHHHHHhhcChh-------
Q 000565 1246 VREVALSLINEMLKNQK-DVMEDSVEIVIEKL-----------LH-VTKDAVPKVSNEAEHCLTVVLSQYDPF------- 1305 (1418)
Q Consensus 1246 vr~~aL~~L~~l~~~~~-~~~~~~~e~~l~~l-----------l~-~~~d~~~~V~~aA~~al~~i~~~~~p~------- 1305 (1418)
||..||..|+.|++..+ ..|..|--.+||.. +. .+.|+...||.+|..++.+|.....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 79999999999999944 44667776777655 33 346999999999999999888553332
Q ss_pred -------------------hHHHhhhhhcccc-chhhHHHHHHHHHHHHhhcCHHHHHh-hhhhhHHHHHHHhcCCCHHH
Q 000565 1306 -------------------RCLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQEELMA-QLPSFLPALFEAFGNQSADV 1364 (1418)
Q Consensus 1306 -------------------~~l~~l~~~l~s~-~~~~~~~alk~l~~lv~~~~~~~l~~-~L~~l~p~l~~~~~d~~seV 1364 (1418)
.+-..|.-.|..+ +.++...++|++..+++.-+-+-+.. .++.++..+..-+.|.|.+|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1222233334333 45677788899999998887766643 67888888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000565 1365 RKTVVFCLVDIYIM 1378 (1418)
Q Consensus 1365 RkaAv~~lv~~~~~ 1378 (1418)
|-++.-||-.+-.+
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998777644
No 91
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=9.4 Score=49.87 Aligned_cols=444 Identities=13% Similarity=0.100 Sum_probs=239.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh-------h
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG-------E 74 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~-------~ 74 (1418)
+.+++.+.+..--.|..-.+.|..++.... +.++..+++.+...+...+..+...||-|+..+++.-+ .
T Consensus 92 enIl~~iv~~p~~iRvql~~~l~~Ii~~D~----p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~ 167 (1010)
T KOG1991|consen 92 ENILETIVQVPELIRVQLTACLNTIIKADY----PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQ 167 (1010)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCC----cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccc
Confidence 456777777777888888888888887532 35678899999999999999999999999999986632 2
Q ss_pred hHHHHHhhhHHHHHHHh----CCCChHHHHHHHHHHHHHHHH---------hChhH---HHH---HHhh-----------
Q 000565 75 HFKLHFNALVPAVVERL----GDAKQPVRDAARRLLLTLMEV---------SSPTI---IVE---RAGS----------- 124 (1418)
Q Consensus 75 ~~~~~~~~ilp~Llekl----gD~k~~Vr~~a~~~L~~l~e~---------~~p~~---v~e---~ll~----------- 124 (1418)
.+...+..++|.|++.. .+......+.....|..+.-. ..++. .++ .++.
T Consensus 168 ~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d 247 (1010)
T KOG1991|consen 168 PLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLD 247 (1010)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCC
Confidence 34556666777776653 344443333333333322221 11111 011 1110
Q ss_pred --hhhhcCChHHHHHHHHHHHHHHhhcCCCcchh--hhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhc
Q 000565 125 --YAWTHRSWRVREEFARTVTSAIGLFSATELTL--QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR 200 (1418)
Q Consensus 125 --~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l--~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~ 200 (1418)
.--.++=||++.=++..+.++.++||...... .++|...+.+ .+...+=+.+.+.|..
T Consensus 248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~------------------n~~~~ile~~lk~l~~ 309 (1010)
T KOG1991|consen 248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLK------------------NFAQGILEVFLKILEQ 309 (1010)
T ss_pred hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 01123446888888888999999999754321 0233222221 1111111111222211
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccc--cCCCc
Q 000565 201 ----HNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEK--LIEPI 274 (1418)
Q Consensus 201 ----~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~--~v~~i 274 (1418)
-=+.+..+..+...+++..... +.-.+..+ . .. .-...-.-+.....+.+++ +-+|
T Consensus 310 ~~~~~yls~rvl~~~l~fl~~~Vs~~-----~twkll~P--H-l~---------~ii~~vIFPlmc~~d~deelwe~DP- 371 (1010)
T KOG1991|consen 310 WRQQLYLSDRVLYYLLNFLEQCVSHA-----STWKLLKP--H-LQ---------VIIQDVIFPLMCFNDEDEELWEEDP- 371 (1010)
T ss_pred HHhcccCCHHHHHHHHHHHHHhccHH-----HHHHHhhh--H-HH---------HHHHHhhhhhcCCCcccHHHHhcCH-
Confidence 0134445555555554321100 00000000 0 00 0000000000000000000 0011
Q ss_pred cccChHHHHHHHHH---hhhhcCCCCCHHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHhh-hccccHHHHHHH
Q 000565 275 KVYSEKELIREFEK---IGSTLVPDKDWSVRIAAMQRVEGLVLGG-AADHPCFRGLLKQLVGPLSTQ-LSDRRSSIVKQA 349 (1418)
Q Consensus 275 ~i~s~~dl~~~l~~---i~~~l~~~~dW~~R~~AL~~L~~ll~~~-~~~~~~f~~~L~~L~~~L~~~-l~D~rs~V~~~A 349 (1418)
. +.+.+ |..++. .-+.+|+.-+-.++..- ....+.+++.+-+++...... ....+-.-.--|
T Consensus 372 -----~---EYiR~~~Di~ed~~-----sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 372 -----Y---EYIRKKFDIFEDGY-----SPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred -----H---HHHHhcCchhcccC-----CCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 1 12222 222222 13567777777666432 223344433333333322222 112223334557
Q ss_pred HHHHHHHHHHhhhh--HHHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHHH-HhCCc----cchHHHHHHHhhhCCCHH
Q 000565 350 CHLLCFLSKELLGD--FEACAEM-FIPVLFKLVVITVLVIAESSDNCIKTML-RNCKA----VRVLPRIADCAKNDRNAV 421 (1418)
Q Consensus 350 ~~~l~~La~~lg~~--f~~~~~~-llp~Ll~~~~~~~~vi~~sa~~al~~i~-~~~~~----~~llp~l~~~l~~~Kn~~ 421 (1418)
+.+++.|+..+.++ |...++. +++.++=.+.+.--.+|..|.-.+..+. ...+- ...+.....++.+++.-.
T Consensus 439 L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lP 518 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELP 518 (1010)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCc
Confidence 89999999888654 5555554 4556666777777788888887777766 33332 355666677776788888
Q ss_pred HHHHHHHHHHHHHHhCCCCcc-ccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhH----HHHHhccCCHHHH
Q 000565 422 LRARCCEYALLVLEHWPDAPE-IQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER----SRRLFSSFDPAIQ 496 (1418)
Q Consensus 422 vR~~~~e~L~~il~~~~~~~~-l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~----a~~ll~~Ld~~~q 496 (1418)
||..++-.|..++..-..... +..|++.+.+-+.++.++-+-|.=...-+. +...|+++ |-.+.+.|-...-
T Consensus 519 V~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~---iV~~fseElsPfA~eL~q~La~~F~ 595 (1010)
T KOG1991|consen 519 VRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEK---IVCKFSEELSPFAVELCQNLAETFL 595 (1010)
T ss_pred hhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHH---HHHHHHHhhchhHHHHHHHHHHHHH
Confidence 999999999988877654422 556778888888888888887776554443 44555655 4556667777777
Q ss_pred HHHhh
Q 000565 497 RIINE 501 (1418)
Q Consensus 497 k~L~~ 501 (1418)
|-++.
T Consensus 596 k~l~~ 600 (1010)
T KOG1991|consen 596 KVLQT 600 (1010)
T ss_pred HHHhc
Confidence 77775
No 92
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=6.7 Score=47.45 Aligned_cols=205 Identities=17% Similarity=0.109 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhChh---HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcch---hhhhhHHHHHHhcCCCChhH
Q 000565 102 ARRLLLTLMEVSSPT---IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT---LQRAILPPILQMLNDPNPGV 175 (1418)
Q Consensus 102 a~~~L~~l~e~~~p~---~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~---l~k~ll~~l~~lL~D~~~~V 175 (1418)
...-|...|+...+- .++.++.. ....-.|+-|..-...+.++.. ...++ +.+.++-.+..=..||+..+
T Consensus 199 g~trlqr~m~~~~~~~~~~il~q~~s-s~ts~~~~~ritd~Af~ael~~---~~~l~~~~lL~s~~~~la~ka~dp~a~~ 274 (533)
T KOG2032|consen 199 GLTRLQRFMACVQDLEMGKILAQLLS-SITSEKENGRITDIAFFAELKR---PKELDKTGLLGSVLLSLANKATDPSAKS 274 (533)
T ss_pred HHHHHHHHHHhhCCccHHHHHhhccc-ccchhcccchHHHHHHHHHHhC---cccccccccHHHHHHHHHHhccCchhHH
Confidence 333445555543332 23333332 2333345666666666655443 33322 11455555556667999999
Q ss_pred HHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCC
Q 000565 176 REAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSST 255 (1418)
Q Consensus 176 R~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~ 255 (1418)
|..|+.+|+.+|......++.+-. .++..|.-
T Consensus 275 r~~a~r~L~~~as~~P~kv~th~~------~~ldaii~------------------------------------------ 306 (533)
T KOG2032|consen 275 RGMACRGLGNTASGAPDKVRTHKT------TQLDAIIR------------------------------------------ 306 (533)
T ss_pred HHHHHHHHHHHhccCcHHHHHhHH------HHHHHHHH------------------------------------------
Confidence 999999999988776655544433 33333222
Q ss_pred cccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 000565 256 RETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLS 335 (1418)
Q Consensus 256 ~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~ 335 (1418)
.|..+.+=++..++++-|..++... .++ ++...+.++..-+.
T Consensus 307 ------------------------------------gL~D~~~~~V~leam~~Lt~v~~~~-~~~-~l~~~~l~ialrlR 348 (533)
T KOG2032|consen 307 ------------------------------------GLYDDLNEEVQLEAMKCLTMVLEKA-SND-DLESYLLNIALRLR 348 (533)
T ss_pred ------------------------------------HHhcCCccHHHHHHHHHHHHHHHhh-hhc-chhhhchhHHHHHH
Confidence 1222222233344444444333211 111 11111334444555
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH---HHHHHhccchHHHHHHHHHHHHH
Q 000565 336 TQLSDRRSSIVKQACHLLCFLSKELLGDFEAC-AEMFIP---VLFKLVVITVLVIAESSDNCIKT 396 (1418)
Q Consensus 336 ~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~-~~~llp---~Ll~~~~~~~~vi~~sa~~al~~ 396 (1418)
.-+.|-+.++...|+..++.|+...|.+|+-+ .+.+.. .++-.+.|.+..+..+....++.
T Consensus 349 ~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 349 TLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred HHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 56677788888889999999999999887653 444442 23444566665555554444444
No 93
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.70 E-value=0.18 Score=54.32 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=90.9
Q ss_pred ChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cChh-hHHHhhhhhccccc
Q 000565 1243 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPF-RCLSVIVPLLVTED 1319 (1418)
Q Consensus 1243 ~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~--~~p~-~~l~~l~~~l~s~~ 1319 (1418)
++.||..++.++..|+. ++.+.++..++.+..++.|+...||+.|-.++..++.. +.+. .++..+.-.+.+.+
T Consensus 1 ~~~vR~n~i~~l~DL~~----r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI----RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 46799999999999997 66677788889999999999999999999999877755 3332 23244445566778
Q ss_pred hhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000565 1320 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1320 ~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d 1359 (1418)
..++-.|..++..+.....++.+..++++++-.+.....+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 8889999999999998878888989999988888776654
No 94
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.64 E-value=0.74 Score=53.63 Aligned_cols=214 Identities=14% Similarity=0.172 Sum_probs=133.8
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHH
Q 000565 281 ELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSKE 359 (1418)
Q Consensus 281 dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-D~rs~V~~~A~~~l~~La~~ 359 (1418)
-...++++++..|....+|-.-..+|.+|.+.+......++ +++.=..+...|.+++. .+-+-|-..|+++...|++.
T Consensus 7 ky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~-~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ 85 (307)
T PF04118_consen 7 KYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFP-YIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFER 85 (307)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCc-eeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence 34456778888888889999999999999999982222222 22212234455556665 57788999999999999998
Q ss_pred hhhh-HHHHHHHHHHHHHHHhcc-----------------------------------------chHHHHHHHHHHHHHH
Q 000565 360 LLGD-FEACAEMFIPVLFKLVVI-----------------------------------------TVLVIAESSDNCIKTM 397 (1418)
Q Consensus 360 lg~~-f~~~~~~llp~Ll~~~~~-----------------------------------------~~~vi~~sa~~al~~i 397 (1418)
+|.+ +...+..+.|.|+-.+.. .+.-+-+.+...++.+
T Consensus 86 ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l 165 (307)
T PF04118_consen 86 IGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKL 165 (307)
T ss_pred cCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHH
Confidence 8864 333333344444333332 2333444455556666
Q ss_pred HHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCC------CCc----cccccHHHHHHHHHHHhcCCChHHHH
Q 000565 398 LRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWP------DAP----EIQRSADLYEDLIRCCVADAMSEVRS 467 (1418)
Q Consensus 398 ~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~------~~~----~l~~~~~~l~~~l~~~l~Dad~eVR~ 467 (1418)
...++...++..+...+. .+|.+|..+..|+..-+.... ... .+......+..++..+++|.+-=|+.
T Consensus 166 ~~~v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 166 KEAVGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred HHhcChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 666666666677766664 378899966666665544433 000 11112346788999999999888874
Q ss_pred HHHHHHHHHHHHchhHHHHHhccCCHHHHHHHh
Q 000565 468 TARMCYRMFAKTWPERSRRLFSSFDPAIQRIIN 500 (1418)
Q Consensus 468 ~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~ 500 (1418)
.+|..+..+||=....+=..+.+.-+..|-
T Consensus 244 ---~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv 273 (307)
T PF04118_consen 244 ---GFLDLLLSHFPLDSPVLQSLLSPEDKELLV 273 (307)
T ss_pred ---HHHHHHHHhCCCCCcchhhhCCHHHHHHHH
Confidence 557777888886554433335555555543
No 95
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.63 E-value=5.2 Score=50.44 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=76.9
Q ss_pred hhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCh--hH--HHHHHhhhhhhcC-ChHHHHHHHHHHHHHHh
Q 000565 73 GEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP--TI--IVERAGSYAWTHR-SWRVREEFARTVTSAIG 147 (1418)
Q Consensus 73 ~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p--~~--v~e~ll~~~~~~K-nprVr~~~l~~l~~~l~ 147 (1418)
.+.++..+...+|.++.|++.....||.+..+.|..+...+.. .. =++.|+....+.. ++-||.-.+.+|...++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568888899999999999999999999999999998875433 21 1456665334444 68899888887766555
Q ss_pred hcCCCcchhhhhhHHHHHHhcCCCC---hhHHHHHHHHHHHHHHhc
Q 000565 148 LFSATELTLQRAILPPILQMLNDPN---PGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 148 ~fg~~~l~l~k~ll~~l~~lL~D~~---~~VR~aA~~~L~~l~~~~ 190 (1418)
...... ...++|.+++.++... .++.......+..+++..
T Consensus 94 Rl~~~e---~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDEE---RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHHH---HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 443321 1478999999887322 233333334444444443
No 96
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.62 E-value=0.14 Score=52.86 Aligned_cols=107 Identities=14% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHH--HHH
Q 000565 800 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 877 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l--~~l 877 (1418)
....||. .+..+-..+.+... .-+..++.+.+||...|.+|...+|..|-.++..+|..|+..+ +.+
T Consensus 13 l~~~dw~----~il~icD~I~~~~~-------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~F 81 (144)
T cd03568 13 LTSENWG----LILDVCDKVKSDEN-------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDF 81 (144)
T ss_pred CCCcCHH----HHHHHHHHHhcCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH
Confidence 4577884 44445555555433 2357889999999999999999999999999999999887544 245
Q ss_pred HHHHHHhhCC-CchhhHHHHHHHHHHHHhcCCchhhhHHHH
Q 000565 878 LPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLPALL 917 (1418)
Q Consensus 878 l~~l~~klgD-~k~svr~~a~~~L~~~~~~~~~~~~l~~l~ 917 (1418)
+..|.+-+.+ ....|+.++.+++..|.+.|+.+..++.+.
T Consensus 82 l~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 122 (144)
T cd03568 82 TQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMS 122 (144)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 5554444444 678899999999999999998776554443
No 97
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.61 E-value=0.076 Score=65.98 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHHHHhcccccccc-HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcccc
Q 000565 1242 ADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE 1318 (1418)
Q Consensus 1242 ~~~~vr~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~--~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~ 1318 (1418)
++...+. .+.+.|......--+++ ...++|.|+.++ +|.++.+..-.-.+.+.+...-=+.+++++|.+++..-
T Consensus 266 ks~~eK~---~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 266 KSVEEKQ---KFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred CcHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 4444555 34444444333333444 445777777765 67666666666666555444322235999999999988
Q ss_pred chhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-----cccccccccCh
Q 000565 1319 DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-----AFLPYLERLNS 1392 (1418)
Q Consensus 1319 ~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-----~~~p~l~~L~~ 1392 (1418)
+-++|+.-|.-+.+.+++++++++. ..|.|+|..+|.|+++-+|...++||..+-..|++ ++.+||.++-+
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 9999999999999999999988875 77899999999999999999999999999877773 56677766544
No 98
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=2.6 Score=53.27 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=112.1
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhhhhHHHH
Q 000565 2 EEALELARA-KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKD-NNFKVSQGALQSLASAAVLSGEHFKLH 79 (1418)
Q Consensus 2 e~~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~D-sN~~V~~~al~~l~~l~~~l~~~~~~~ 79 (1418)
+.+++++.+ +-..+|.+|+..|+.+............+..|+..|. +| .+..+...+|+++..+..+- +
T Consensus 25 ~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~---~D~~D~E~ik~~LdTl~il~~~d-d----- 95 (970)
T KOG0946|consen 25 EKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQ---RDYMDPEIIKYALDTLLILTSHD-D----- 95 (970)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHh---hccCCHHHHHHHHHHHHHHHhcC-c-----
Confidence 456777774 5689999999999988877543322223455665543 33 46777888888887776441 1
Q ss_pred HhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcch---h
Q 000565 80 FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT---L 156 (1418)
Q Consensus 80 ~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~---l 156 (1418)
-|.+ ..|++ ..-+-..+.-..|+. -+..+.-++. .+.+++.+||-..++.|.+++..-|.+.-+ .
T Consensus 96 ----~~~v---~dds~-qsdd~g~~iae~fik---~qd~I~lll~-~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 96 ----SPEV---MDDST-QSDDLGLWIAEQFIK---NQDNITLLLQ-SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred ----chhh---cccch-hhhHHHHHHHHHHHc---CchhHHHHHH-HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0111 12333 122333333333332 2344555665 789999999999999999999887765322 1
Q ss_pred hhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcCh
Q 000565 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP 192 (1418)
Q Consensus 157 ~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~ 192 (1418)
.+.-|..++.+|.|...-||+.|+-+|.++.+-.+.
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 144577889999999999999999999999887763
No 99
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.38 Score=57.54 Aligned_cols=180 Identities=17% Similarity=0.152 Sum_probs=126.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcccC-hHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHH
Q 000565 8 ARAKDTKERMAGVERLHQLLEASRKSLT-SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPA 86 (1418)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~-~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~ 86 (1418)
+.+..|+.|....--+.++..... .+ -+.++.++-.+..-..|++.++...|+.+|+..+..++.....|...++.+
T Consensus 226 ~ts~~~~~ritd~Af~ael~~~~~--l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~lda 303 (533)
T KOG2032|consen 226 ITSEKENGRITDIAFFAELKRPKE--LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDA 303 (533)
T ss_pred cchhcccchHHHHHHHHHHhCccc--ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHH
Confidence 345669999888777777665422 11 133566666666677899999999999999999999888889999999999
Q ss_pred HHHHhCC-CChHHHHHHHHHHHHHHHHhChhHH-------HHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCc--chh
Q 000565 87 VVERLGD-AKQPVRDAARRLLLTLMEVSSPTII-------VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE--LTL 156 (1418)
Q Consensus 87 LleklgD-~k~~Vr~~a~~~L~~l~e~~~p~~v-------~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~--l~l 156 (1418)
++--|-| .+..|.-.+..+|..+.+......+ ..++.+ .|.+-++++|....-.+..+..--|-.. +..
T Consensus 304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Ft 382 (533)
T KOG2032|consen 304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFT 382 (533)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcCCCchhhhH
Confidence 8877754 4567888888999998886444333 333333 7888999999988887776554333321 111
Q ss_pred hhhhHHH---HHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 157 QRAILPP---ILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 157 ~k~ll~~---l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
+.+... +.--|.|+||.|=.+....+-.+|-.++
T Consensus 383 -e~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~ 419 (533)
T KOG2032|consen 383 -EQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLV 419 (533)
T ss_pred -HHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhH
Confidence 222222 2234689999998877777777766666
No 100
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.47 E-value=0.13 Score=53.15 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=78.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHH--HHH
Q 000565 800 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 877 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l--~~l 877 (1418)
..+.|| +++..|-+.+.+... .-+..++.|.++|..+|.+|...+|..|-.++..+|..|+..+ +.+
T Consensus 18 ~~~~Dw----~~~l~icD~i~~~~~-------~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 18 LPSPDW----SLILEICDLINSSPD-------GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp SSS--H----HHHHHHHHHHHTSTT-------HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred CCCCCH----HHHHHHHHHHHcCCc-------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 457788 455667777777643 3467899999999999999999999999999999998887654 334
Q ss_pred HHHHHHhhC-CC-ch--hhHHHHHHHHHHHHhcCCchhhhHHHHH
Q 000565 878 LPHVFSRLI-DP-KE--LVRQPCSTTLDIVSKTYSVDSLLPALLR 918 (1418)
Q Consensus 878 l~~l~~klg-D~-k~--svr~~a~~~L~~~~~~~~~~~~l~~l~~ 918 (1418)
+..|.+-+. .. .. .||+++.++|..|...|..+--+..+..
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~ 131 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQD 131 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHH
Confidence 444444332 12 22 2999999999999999966655555443
No 101
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.39 E-value=0.18 Score=53.61 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh-hhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHH---HHHhhhhHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEA-SRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASA---AVLSGEHFK 77 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~-~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l---~~~l~~~~~ 77 (1418)
.-|+++|..++--.|.-|.+.+.++++. ....+ .+-+.+++--++..++..|..|...+|++|..+ ....|+.+.
T Consensus 41 pif~dGL~Et~~Py~flA~~g~~dll~~~~~~ki-lPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLv 119 (183)
T PF10274_consen 41 PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKI-LPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALV 119 (183)
T ss_pred HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3488999999999999999999999987 22222 233556666777899999999999999999999 566799999
Q ss_pred HHHhhhHHHHH----HH--hCC-----CChHHHHHHHHHHHHHHHHhChh
Q 000565 78 LHFNALVPAVV----ER--LGD-----AKQPVRDAARRLLLTLMEVSSPT 116 (1418)
Q Consensus 78 ~~~~~ilp~Ll----ek--lgD-----~k~~Vr~~a~~~L~~l~e~~~p~ 116 (1418)
+|...++|.+- .+ +|| .+..+++...++|..+-..-+++
T Consensus 120 PyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 120 PYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999999876 22 232 34557888888887777666654
No 102
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.38 E-value=0.28 Score=64.20 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Q 000565 1203 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD---ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 1279 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d---~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~ 1279 (1418)
-+|+.|..-|.-+.+..+.....+ +-.+-..|+..|.+ .+. .-...+.++..+.-.++..+++ +-..+|+++-.
T Consensus 748 ~errgael~L~~l~~~fg~sl~~k-lp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAK-LPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHh-cchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 367777767666666555444332 11121334444432 221 2223566677777666777777 77889999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhcChh---hHHHhhhhhccccc-hhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHH
Q 000565 1280 TKDAVPKVSNEAEHCLTVVLSQYDPF---RCLSVIVPLLVTED-EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1355 (1418)
Q Consensus 1280 ~~d~~~~V~~aA~~al~~i~~~~~p~---~~l~~l~~~l~s~~-~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~ 1355 (1418)
....+..|+.+|..|+..+.+...-+ .|+..+.|++..-+ .-.+.++...+..|. +...-.+....+-++|.|..
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~-~~l~~~l~~~~~Llv~pllr 903 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLD-AVLMVGLVPYNPLLVVPLLR 903 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHH-Hhhcccccccceeehhhhhc
Confidence 99999999999999999998875555 36666777775433 333444445444444 44445566788999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhh
Q 000565 1356 AFGNQSADVRKTVVFCLVDIYIMLGK 1381 (1418)
Q Consensus 1356 ~~~d~~seVRkaAv~~lv~~~~~lg~ 1381 (1418)
.|.|....||.+|..|+..+-.+++.
T Consensus 904 ~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 904 RMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred ccccchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988884
No 103
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=12 Score=47.18 Aligned_cols=175 Identities=11% Similarity=0.155 Sum_probs=103.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.+++..|.++.--.|+.|+--|.++|-+.+.. +..-++-|..-+.|+.+.|+.+|..+|+.++.+.++. |+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn---yL- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN---YL- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc---cc-
Confidence 46788899999999999999999999865433 3344445556689999999999999999999775443 22
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHH---hCh------hHHHHHHhhhhhhcCCh-HHHHHHHHHHHHHHhhcCC
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEV---SSP------TIIVERAGSYAWTHRSW-RVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~---~~p------~~v~e~ll~~~~~~Knp-rVr~~~l~~l~~~l~~fg~ 151 (1418)
.+.|.+.+-+.++... +.|..+++. .+| ..+++.|.. .+..-.. -+..+|++++...--.-|-
T Consensus 218 ~LAP~ffkllttSsNN------WmLIKiiKLF~aLtplEPRLgKKLieplt~-li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNN------WVLIKLLKLFAALTPLEPRLGKKLIEPITE-LMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred cccHHHHHHHhccCCC------eehHHHHHHHhhccccCchhhhhhhhHHHH-HHHhhHHHHHHHHHHHHheeehhccCC
Confidence 2344444444333221 122222221 111 123333332 1211111 2344555555443000121
Q ss_pred -Ccc-hhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh
Q 000565 152 -TEL-TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ 193 (1418)
Q Consensus 152 -~~l-~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~ 193 (1418)
.+. .+ ..++..+-.+++|+++..|.-+.-++..|.+.-...
T Consensus 291 ~d~~asi-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~ 333 (877)
T KOG1059|consen 291 SDHSASI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA 333 (877)
T ss_pred CCcHHHH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH
Confidence 221 23 467788888888888888888888888776655443
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.27 E-value=9 Score=45.61 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=63.4
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhH
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAIL 161 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll 161 (1418)
..++.+++-+.|.+..+|..+...+..+- ....+..+.. .+.+.++.||..++..|. .+|. +..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----~~~av~~l~~-~l~d~~~~vr~~a~~aLg----~~~~------~~a~ 107 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----SEEAVPLLRE-LLSDEDPRVRDAAADALG----ELGD------PEAV 107 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----hHHHHHHHHH-HhcCCCHHHHHHHHHHHH----ccCC------hhHH
Confidence 45667777788877778888777744433 2344555554 677888888888877443 2332 5677
Q ss_pred HHHHHhcC-CCChhHHHHHHHHHHHHH
Q 000565 162 PPILQMLN-DPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 162 ~~l~~lL~-D~~~~VR~aA~~~L~~l~ 187 (1418)
+.++++|+ |.+..||..|..+|+.+.
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 77888787 789999999888887763
No 105
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=13 Score=47.21 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=69.0
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
.+.++..+....|-.+++=-|.+|..+-..+ ... |.+|+.-+...+....-.|.+.++...-.|+..-
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~~~~---~~i----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----- 348 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELKALH---EKI----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----- 348 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhhhh---HHH----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-----
Confidence 4445554444444444444455554443111 111 2333333444455455555555665554444432
Q ss_pred HHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 366 ACAEMFIPVLFKLVV-------ITVLVIAESSDNCIKTMLRNCKA--VRVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 366 ~~~~~llp~Ll~~~~-------~~~~vi~~sa~~al~~i~~~~~~--~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
-++.++..|-+-+. +.+.-.|+.-..+|.+..-+..- ..++|.+++.+ .+-|+..-..+..|+..++++
T Consensus 349 -Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fi-sD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 349 -NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFI-SDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred -cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHh
Confidence 22333333322221 12333565555666555433332 46777777777 466777777677777777777
Q ss_pred CCC
Q 000565 437 WPD 439 (1418)
Q Consensus 437 ~~~ 439 (1418)
++.
T Consensus 427 ~p~ 429 (948)
T KOG1058|consen 427 FPN 429 (948)
T ss_pred Cch
Confidence 764
No 106
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.16 E-value=11 Score=53.82 Aligned_cols=313 Identities=13% Similarity=0.118 Sum_probs=174.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcc--cChHhH-HHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhH
Q 000565 9 RAKDTKERMAGVERLHQLLEASRKS--LTSAEV-TSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGEHFKLHFNALV 84 (1418)
Q Consensus 9 ~s~~Wk~R~~ale~L~~~l~~~~~~--~~~~~~-~~lv~~l~~~l-~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~il 84 (1418)
.+.+-..++-|++.|.++....-.. +..-.+ .+|++-+...+ +..+..|.+..++|+..++..-+..++.--..|+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 4557778899999887766543211 111112 24555444333 3457799999999999998776666665444555
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHH-hC-----hhH----HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc-----
Q 000565 85 PAVVERLGDAKQPVRDAARRLLLTLMEV-SS-----PTI----IVERAGSYAWTHRSWRVREEFARTVTSAIGLF----- 149 (1418)
Q Consensus 85 p~LleklgD~k~~Vr~~a~~~L~~l~e~-~~-----p~~----v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f----- 149 (1418)
..+---..|..+.+.+.|.+++..++.. ++ +.. .++.+...+-..++..+--.++..|..+...+
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 5544445688888999999999887753 11 122 33333332322233555445555544332211
Q ss_pred CC---------------------Cc---c----hhhhhhHHHH---HHhcCCCChhHHHHHHHHHHHHHHhcChhHHH-h
Q 000565 150 SA---------------------TE---L----TLQRAILPPI---LQMLNDPNPGVREAAILCIEEMYTYAGPQFRD-E 197 (1418)
Q Consensus 150 g~---------------------~~---l----~l~k~ll~~l---~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~-~ 197 (1418)
+. .. + ....-.+|.+ ..+..|..++||..|+++|-.+....|..|.. +
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 00 00 0 0012344444 44567999999999999999999888876533 2
Q ss_pred hhcCCCCHHHHH-HHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccc
Q 000565 198 LHRHNLPNSMVK-DINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKV 276 (1418)
Q Consensus 198 L~~~~l~~~~l~-~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i 276 (1418)
.. ..++ .|..-|+.++....+.. + ... .+...+...
T Consensus 1387 W~------~if~~VLFPIFd~l~~~~~~~~-----~--------------~~~-------~~~~~~~~~----------- 1423 (1780)
T PLN03076 1387 WE------RVFESVLFPIFDYVRHAIDPSG-----G--------------DEP-------EGQGVDGDQ----------- 1423 (1780)
T ss_pred HH------HHHHHHHHHHHHHHHHhhcccc-----c--------------ccc-------ccccccccc-----------
Confidence 22 1122 34455665432110000 0 000 000000000
Q ss_pred cChHHHHHHHHHhhhhcCCCCCH--HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 000565 277 YSEKELIREFEKIGSTLVPDKDW--SVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLC 354 (1418)
Q Consensus 277 ~s~~dl~~~l~~i~~~l~~~~dW--~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~ 354 (1418)
+.. ..+.| +.-..||+.+-.|+. .-|+.+-..|..++..|...+...|.++++-++.|+.
T Consensus 1424 -~~~--------------e~~~Wl~eT~~~AL~~lvdLft---~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~ 1485 (1780)
T PLN03076 1424 -GEL--------------DQDAWLYETCTLALQLVVDLFV---KFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFV 1485 (1780)
T ss_pred -cch--------------hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 000 12446 344555555555542 1123333356666666677788899999999999999
Q ss_pred HHHHHhhhhHHH-HHHHHHHHHHHHhccc
Q 000565 355 FLSKELLGDFEA-CAEMFIPVLFKLVVIT 382 (1418)
Q Consensus 355 ~La~~lg~~f~~-~~~~llp~Ll~~~~~~ 382 (1418)
.|....|..|.. +-..++..+.+.+..+
T Consensus 1486 ~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1486 RLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 999999998854 4444555555555444
No 107
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.07 E-value=0.82 Score=53.29 Aligned_cols=185 Identities=13% Similarity=0.080 Sum_probs=139.4
Q ss_pred HHHhcCCC--HHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 5 LELARAKD--TKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 5 l~~l~s~~--Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
+.++-++. -.+-..|+|--..+|+..+..--..++.-+...+.+.+.-...+|.-.-++++....-.++..+.+.+.-
T Consensus 59 LaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~ 138 (307)
T PF04118_consen 59 LAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKG 138 (307)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 34444444 3455667777777777654221134556667777888888888999999999999887888888898888
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcC------CC----
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFS------AT---- 152 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg------~~---- 152 (1418)
++..++--+-|....+-+.+...|..+.+.++....+..+.. ++ -.+|.+|..++.|+..-+..+. ..
T Consensus 139 li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl-~i-i~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~ 216 (307)
T PF04118_consen 139 LILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWL-CI-ITSPSRRLGALNYLLRRLPKFQNDELSLSSEEQE 216 (307)
T ss_pred HHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHH-HH-hcCcchhHHHHHHHHHhCCcccccccccchHHHH
Confidence 888888888888888999999999999999888866666543 22 2679999999999988776655 10
Q ss_pred -cc--hhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcCh
Q 000565 153 -EL--TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP 192 (1418)
Q Consensus 153 -~l--~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~ 192 (1418)
.+ +. ..++..++.+|+|.+.-|+..+..+|..-+..-..
T Consensus 217 ~~~~~~~-~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~ 258 (307)
T PF04118_consen 217 YCLGPDP-GLLVRALCACLEDENILVQRGFLDLLLSHFPLDSP 258 (307)
T ss_pred HhcCCCc-cHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCc
Confidence 01 11 35788999999999999999999998887655443
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.03 E-value=0.39 Score=57.24 Aligned_cols=153 Identities=25% Similarity=0.305 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+.+++.+.+.+|-.|..+...+..+- ....+..+...+.|.++.|...+..+++.+- ..
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45677788888999999888753322 1355666677889999999999999776552 12
Q ss_pred hhHHHHHHHhC-CCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCC------------hHHHHHHHHHHHHHHhh
Q 000565 82 ALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRS------------WRVREEFARTVTSAIGL 148 (1418)
Q Consensus 82 ~ilp~Lleklg-D~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~Kn------------prVr~~~l~~l~~~l~~ 148 (1418)
..+|.|++.+. |.+..||..+..+|..+..... +..++. .+.+++ +.+|..++..+..
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~-~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~---- 175 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLE-ALQDEDSGSAAAALDAALLDVRAAAAEALGE---- 175 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHH-HhccchhhhhhhhccchHHHHHHHHHHHHHH----
Confidence 34667777776 7999999999999888764322 333433 344443 2455555544432
Q ss_pred cCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc
Q 000565 149 FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 149 fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
+|. ...++.+..++.|.+..||.+|...|+.+....
T Consensus 176 ~~~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 176 LGD------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred cCC------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 232 467788899999999999999999999887553
No 109
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.90 E-value=1.6 Score=52.76 Aligned_cols=200 Identities=18% Similarity=0.314 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHHhhCC----hhhHHHHHHHHHHHHHHHhcC------C-ChHHHHHHHHHHHHHHHhcc--ccc-ccc
Q 000565 1203 TSKHGALQQLIKASVAND----HSIWTKYFNQILTAVLEVLDD------A-DSSVREVALSLINEMLKNQK--DVM-EDS 1268 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~----~~~~~~~f~~ll~~ll~~l~d------~-~~~vr~~aL~~L~~l~~~~~--~~~-~~~ 1268 (1418)
..|.+|...|.+.++... .....+++..++..+.+=+.. + +..+...||++|..++-+.. ..+ +++
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHH
Confidence 689999999999988765 223445566555555543322 2 45577789999999876532 222 234
Q ss_pred HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhcc-ccchhhHHHHHHHHHHHHhhc
Q 000565 1269 VEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL 1337 (1418)
Q Consensus 1269 ~e~~l~~ll~~~~--d~~~~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~ 1337 (1418)
..-++...++.+. ...|.|...+..|+.. +.++|. +++.++..+-. -+..-+....+.++.+++.+.
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~ 165 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF 165 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 4446777777764 4568888888888862 445554 22222222111 111223556777788999777
Q ss_pred CHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--ccc----ccccccChHHHHHHHHHHHhhh
Q 000565 1338 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AFL----PYLERLNSTQLRLVTIYANRIS 1406 (1418)
Q Consensus 1338 ~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~--~~~----p~l~~L~~s~~kll~~yi~r~~ 1406 (1418)
+ +....+...-+|.|+..+-|...++|-.|..+...+-.++|. .+- .-+..-.... ++++.|.+|++
T Consensus 166 p-~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~ 238 (372)
T PF12231_consen 166 P-QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLK 238 (372)
T ss_pred H-HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHH
Confidence 7 667778888899999999999999999999999999999984 222 2333222233 89999988873
No 110
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.87 E-value=0.73 Score=55.87 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhc-Chh
Q 000565 1227 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY-DPF 1305 (1418)
Q Consensus 1227 ~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~-~p~ 1305 (1418)
....++..+++.+..++..||-.+|.+|+-+....+.-=+..+-.++.+|.+.+=|-.+.||..|..|+..+-.-. +++
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 4566667888888888999999999999999887665444456778899999999999999999999997665443 333
Q ss_pred -hHHHhhhhhcccc-chhhHHHHHHHH-------HHHHhhcC-HHH------HHhhhhhh-----------HHHHHHHhc
Q 000565 1306 -RCLSVIVPLLVTE-DEKTLVTCINCL-------TKLVGRLS-QEE------LMAQLPSF-----------LPALFEAFG 1358 (1418)
Q Consensus 1306 -~~l~~l~~~l~s~-~~~~~~~alk~l-------~~lv~~~~-~~~------l~~~L~~l-----------~p~l~~~~~ 1358 (1418)
++..++..+++.+ ...++..|+-.+ .-++||.- .+. -+++||.+ +=-+..|+.
T Consensus 168 n~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~ 247 (885)
T COG5218 168 NRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLL 247 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcch
Confidence 4555666666532 233455444332 13333331 011 12334433 225678999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh-cccccccccChHHHHHHHHHHHhhhhcc
Q 000565 1359 NQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQAR 1409 (1418)
Q Consensus 1359 d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~~kll~~yi~r~~~~~ 1409 (1418)
|++-+||+|++.++..-|..--+ ++.-.+..|+-+..+.+-..|+..=+.|
T Consensus 248 dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~F~~R 299 (885)
T COG5218 248 DREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGVFEKR 299 (885)
T ss_pred hhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHHHhhc
Confidence 99999999999999988866554 6777889999999888888887765444
No 111
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.82 E-value=2.3 Score=51.52 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=129.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhcccChHh----HHHHHHHHHHhhcc-------cchHHHHHHHHHHHHHHHH--hh
Q 000565 7 LARAKDTKERMAGVERLHQLLEASRKSLTSAE----VTSLVDCCLDLLKD-------NNFKVSQGALQSLASAAVL--SG 73 (1418)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~----~~~lv~~l~~~l~D-------sN~~V~~~al~~l~~l~~~--l~ 73 (1418)
||...+=..|.+||..|...++...+..+... +.-|+..+.+-+.. .+.++..+|+.+++.++.. +-
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 46677888999999999999987654433322 33344444333333 3778999999999998733 11
Q ss_pred hhHHH-HHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH-hChh----HHHHHHhh--hhhhc--CChHHHHHHHHHHH
Q 000565 74 EHFKL-HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV-SSPT----IIVERAGS--YAWTH--RSWRVREEFARTVT 143 (1418)
Q Consensus 74 ~~~~~-~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~-~~p~----~v~e~ll~--~~~~~--KnprVr~~~l~~l~ 143 (1418)
..+.. ....++...++.+.+.+. -+..+...|..+.+. +++. ...+.++. ..+++ ++--+-.+.+..+.
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 22222 233477777888866553 245555555555542 3332 22333332 12222 23346677888888
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh------HHHhhhcCCCCHHHHHHHHHHHHH
Q 000565 144 SAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ------FRDELHRHNLPNSMVKDINARLER 217 (1418)
Q Consensus 144 ~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~------l~~~L~~~~l~~~~l~~l~~~f~~ 217 (1418)
.++..|...-..-....+|.+...+-+....+|..|..++.++...+|+. +...+..........+.+..++.+
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKE 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 88887765332212468889999889999999999999999999888853 222332222222445555555655
Q ss_pred h
Q 000565 218 I 218 (1418)
Q Consensus 218 ~ 218 (1418)
.
T Consensus 240 m 240 (372)
T PF12231_consen 240 M 240 (372)
T ss_pred H
Confidence 4
No 112
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.75 E-value=0.64 Score=59.65 Aligned_cols=167 Identities=16% Similarity=0.060 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPV 374 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~ 374 (1418)
.+.+=.+|++||+++-+.+..|. ++ ..|+.-+.+.+...+..+-+....-+-..++.- + ..+-..+++
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~----dm----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P---~~~lLavNt 96 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGE----DM----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-P---ELALLAVNT 96 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCC----Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-H---HHHHHHHHH
Confidence 35667889999999776654332 12 233333334444444444444433333333322 2 456678999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHH-HHHH
Q 000565 375 LFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADL-YEDL 453 (1418)
Q Consensus 375 Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~-l~~~ 453 (1418)
+.+-+++.+..+|-.|..++..+=..-=..-+++.|.+++ +|+++-||+.++-.+..+.+.-+.. ..+. +...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l-----~~~~g~~~~ 170 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDL-----YHELGLIDI 170 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhh-----hhcccHHHH
Confidence 9999999999999777666654322111234555666666 7999999999999988888754321 1122 5666
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHchh
Q 000565 454 IRCCVADAMSEVRSTARMCYRMFAKTWPE 482 (1418)
Q Consensus 454 l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~ 482 (1418)
++.++.|.||.|-.+|-- +|+.+.|+
T Consensus 171 l~~l~~D~dP~Vi~nAl~---sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALA---SLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHH---HHHHhchh
Confidence 777889999999877654 45555555
No 113
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=1.3 Score=56.26 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=128.1
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHhhhh
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAAD-HPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~-~~~f~~~L~~L~~~L~~~l~-D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
+.+|+.-+..+.|-...++||.+|-.++.-+..+ ...|. ++.+++.|...++ +.|.-++-.||.+|.+|++++-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fp--v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFP--VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhcccc--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4555555555668889999999999887533322 22332 4677788877776 578999999999999999999766
Q ss_pred HHHHHH-HHHHHHHHHhccchHH-HHHHHHHHHHHHHHhCCc-----cchHH--HHHHHhhhCCCHHHHHHHHHHHHHHH
Q 000565 364 FEACAE-MFIPVLFKLVVITVLV-IAESSDNCIKTMLRNCKA-----VRVLP--RIADCAKNDRNAVLRARCCEYALLVL 434 (1418)
Q Consensus 364 f~~~~~-~llp~Ll~~~~~~~~v-i~~sa~~al~~i~~~~~~-----~~llp--~l~~~l~~~Kn~~vR~~~~e~L~~il 434 (1418)
..-.++ ..+|+|+.++..-.++ +++.+..||..|-+.-+- ..++. ..++.+.. -..|...+...+ |.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi---~aQR~AlaiaaN-~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI---HAQRVALAIAAN-CC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH---HHHHHHHHHHHH-HH
Confidence 544444 4899999988766543 778888888776543221 12222 12344421 223444444434 44
Q ss_pred HhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc---hhHHHHHhc
Q 000565 435 EHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTW---PERSRRLFS 489 (1418)
Q Consensus 435 ~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~---p~~a~~ll~ 489 (1418)
..+..+ .. ..+-...++|...+.-.|..+=+.+.-||..+..-| |+..+.+.+
T Consensus 323 ksi~sd-~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s 378 (1051)
T KOG0168|consen 323 KSIRSD-EF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS 378 (1051)
T ss_pred hcCCCc-cc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc
Confidence 444433 22 233345678888999999999999999998887544 667777654
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=5.5 Score=50.28 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhcc-------ccHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD-------RRSSIVKQACHLLCFLSKELLGDFEAC 367 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D-------~rs~V~~~A~~~l~~La~~lg~~f~~~ 367 (1418)
+..|...|..+|.....|+... + +.+++..|++.+.+ -+-+-.+.-+++|...| -.|-.+
T Consensus 327 ss~dldvr~Ktldi~ldLvssr-----N----vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca----v~Fp~~ 393 (948)
T KOG1058|consen 327 SSPDLDVRSKTLDIALDLVSSR-----N----VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA----VKFPEV 393 (948)
T ss_pred CcccccHHHHHHHHHHhhhhhc-----c----HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh----hcChHH
Confidence 5689999999999998888532 2 23455555544432 22222333333333333 357778
Q ss_pred HHHHHHHHHHHhccchHHHHHHHH
Q 000565 368 AEMFIPVLFKLVVITVLVIAESSD 391 (1418)
Q Consensus 368 ~~~llp~Ll~~~~~~~~vi~~sa~ 391 (1418)
+..++|.|++-+++.+...+....
T Consensus 394 aatvV~~ll~fisD~N~~aas~vl 417 (948)
T KOG1058|consen 394 AATVVSLLLDFISDSNEAAASDVL 417 (948)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHH
Confidence 999999999999999965554433
No 115
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.54 E-value=6.7 Score=46.99 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=100.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHH---------HHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHH
Q 000565 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVD---------CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL 78 (1418)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~---------~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~ 78 (1418)
..+-.-|.|..|+-.+...+++.++..-..++..|+. .+.-.++|.||+....|++++.++.++...++..
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455678999999999998887665433344555543 1223689999999999999999999885544332
Q ss_pred HHhhhHHHHHHHhCCCCh---------HHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc
Q 000565 79 HFNALVPAVVERLGDAKQ---------PVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 79 ~~~~ilp~LleklgD~k~---------~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f 149 (1418)
. +-+||..- +|++. ..+|+.+. .....|.+..++++++..++..-
T Consensus 85 a---------~~~~~~~ftpf~v~~a~si~~~-~r~l~~~l----------------~~e~~~~~~tq~~kcla~lv~~~ 138 (728)
T KOG4535|consen 85 A---------EDTSDHAFTPFSVMIACSIREL-HRCLLLAL----------------VAESSSQTVTQIIKCLANLVSNA 138 (728)
T ss_pred H---------hccCCcCCCchHHHHHHHHHHH-HHHHHHHH----------------HHhcCchhHHHHHHHHHHHHhcC
Confidence 1 12333321 12221 11222221 12334566677888888888764
Q ss_pred CCCcch--hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 150 SATELT--LQRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 150 g~~~l~--l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
....+. +.-++...+.+++.++++.||-.+..+++.|..
T Consensus 139 p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 139 PYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 444332 225778889999999999999999988887764
No 116
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=23 Score=46.83 Aligned_cols=368 Identities=14% Similarity=0.143 Sum_probs=210.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHh-hhhHHHHH
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLK--DNNFKVSQGALQSLASAAVLS-GEHFKLHF 80 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~--DsN~~V~~~al~~l~~l~~~l-~~~~~~~~ 80 (1418)
+++..-..+|..|..+.--+.+++...+. ...+..|++-++..-. -.|.....+.+..+.++++.. ++..-+|+
T Consensus 180 ~~~~Yl~~~~~~r~~aalllsk~~sR~D~---~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~ 256 (1133)
T KOG1943|consen 180 FFENYLISSGILRRSAALLLSKLFSRTDV---KDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYS 256 (1133)
T ss_pred HHHHHHhccchhHHHHHHHHHHHcccccH---HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHh
Confidence 33444456778888888888877754221 1113344444332222 245556677788888887665 34555665
Q ss_pred hhhHHHHHHH-hCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcC--ChHHHHHHHHHHHHHH-hhcCC-----
Q 000565 81 NALVPAVVER-LGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHR--SWRVREEFARTVTSAI-GLFSA----- 151 (1418)
Q Consensus 81 ~~ilp~Llek-lgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~K--nprVr~~~l~~l~~~l-~~fg~----- 151 (1418)
...+..|=.. ..+.++ -...+.+..++..++. ..++++ +||...++-....++- ..++.
T Consensus 257 ~~~~r~L~~~~~~~d~~---~llrKllvKl~QRiGl---------v~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~ 324 (1133)
T KOG1943|consen 257 DTGLRMLSVCRESNDGQ---SLLRKLLVKLVQRIGL---------VSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVI 324 (1133)
T ss_pred hhhhHhhcccccccccH---hHHHHHHHHHHHHhhh---------eecCCCCcchhhhcccchhhhccCccccccCcccc
Confidence 5555443211 222221 2333344444432221 135554 5777655543332210 01111
Q ss_pred ------Ccch---hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHHHhCCCC
Q 000565 152 ------TELT---LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQI 222 (1418)
Q Consensus 152 ------~~l~---l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~ 222 (1418)
.+.+ +.+.++..+...|.|.+..||-.|.+.++.+...+...+-. +.+..+..
T Consensus 325 ~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---------~vi~svid--------- 386 (1133)
T KOG1943|consen 325 LQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD---------QVIGSVID--------- 386 (1133)
T ss_pred cccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH---------HHHHHHHH---------
Confidence 0011 11456777777888899899988888888776555422110 11111111
Q ss_pred CCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHHHHHHhhhhcCCCCCHHHH
Q 000565 223 RSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVR 302 (1418)
Q Consensus 223 ~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~~l~~i~~~l~~~~dW~~R 302 (1418)
+..-..++..|.
T Consensus 387 ------------------------------------------------------------------~~~p~e~~~aWH-- 398 (1133)
T KOG1943|consen 387 ------------------------------------------------------------------LFNPAEDDSAWH-- 398 (1133)
T ss_pred ------------------------------------------------------------------hcCcCCchhHHH--
Confidence 000011345676
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhc-c-------ccHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHH
Q 000565 303 IAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-D-------RRSSIVKQACHLLCFLSKELLGD-FEACAEMFIP 373 (1418)
Q Consensus 303 ~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-D-------~rs~V~~~A~~~l~~La~~lg~~-f~~~~~~llp 373 (1418)
.|+-.|..+...|-.-+.- +.++++.+.+.+. | .-..|.-.||-.+-.++....+. ++++...+.+
T Consensus 399 -gacLaLAELA~rGlLlps~----l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s 473 (1133)
T KOG1943|consen 399 -GACLALAELALRGLLLPSL----LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLAS 473 (1133)
T ss_pred -HHHHHHHHHHhcCCcchHH----HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHH
Confidence 6666666666544332222 3344444433332 2 22467778899999999988664 7888888888
Q ss_pred HHHHH-hccchHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHH
Q 000565 374 VLFKL-VVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYE 451 (1418)
Q Consensus 374 ~Ll~~-~~~~~~vi~~sa~~al~~i~~~~~~-~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~ 451 (1418)
.|+-. +=|.--.+|-+|.+|+...+..-+. +.=++.+.. . +.=+...|.+|..-+...+..++.- . -+.+.
T Consensus 474 ~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~-~-dy~sV~~rsNcy~~l~~~ia~~~~y--~---~~~f~ 546 (1133)
T KOG1943|consen 474 ALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIST-I-DYFSVTNRSNCYLDLCVSIAEFSGY--R---EPVFN 546 (1133)
T ss_pred HHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhh-c-chhhhhhhhhHHHHHhHHHHhhhhH--H---HHHHH
Confidence 87654 4455556888888888877765443 444454432 1 3446778899988888888877642 1 23455
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHchhHH
Q 000565 452 DLIRCCVADAMSEVRSTARMCYRMFAKTWPERS 484 (1418)
Q Consensus 452 ~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a 484 (1418)
+.+.+=+.-=|..+|.-|..++..|+...|+..
T Consensus 547 ~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 547 HLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 566555788899999999999999988888763
No 117
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.51 E-value=7.6 Score=44.52 Aligned_cols=194 Identities=18% Similarity=0.144 Sum_probs=117.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhc-ccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRK-SLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~-~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
++=+.|.+.|+..|..|++-|..++...+. .+...++..+++.+...+.| ......++..+..++ ++...-.....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALV-KMKNFSPESAV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHH-hCcCCChhhHH
Confidence 445678899999999999999999998763 35567788888888777754 345556688887777 33333334455
Q ss_pred hhHHHHHHHhC--CCChHHHHHHHHHHHHHHHHhC------hhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC--
Q 000565 82 ALVPAVVERLG--DAKQPVRDAARRLLLTLMEVSS------PTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA-- 151 (1418)
Q Consensus 82 ~ilp~Lleklg--D~k~~Vr~~a~~~L~~l~e~~~------p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~-- 151 (1418)
.++..+++... ..-..+|-.+.+.|..+++... ....+..++...-.-|.||-.--+...+..++..|..
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~ 159 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE 159 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence 66666665432 3344578888888888877521 1123333443333456666444333333322222111
Q ss_pred ---------------------------Ccch--------------hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc
Q 000565 152 ---------------------------TELT--------------LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 152 ---------------------------~~l~--------------l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
..-+ +.+..+|.+..=|..+.+.|+.-+.++|..+....
T Consensus 160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 0000 11334566666667777778888888888887777
Q ss_pred Chh-HHHhhh
Q 000565 191 GPQ-FRDELH 199 (1418)
Q Consensus 191 G~~-l~~~L~ 199 (1418)
|.. +.+++.
T Consensus 240 ~~~~~~~~~~ 249 (262)
T PF14500_consen 240 GADSLSPHWS 249 (262)
T ss_pred CHHHHHHHHH
Confidence 744 455544
No 118
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.86 Score=61.97 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=136.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
..++.+|..+|-..|..|+++|.+++.+.+......-+..+...+.+.+.|.+..|+.+..+++..+...+++.+.+|+.
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK 123 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLK 123 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35678888999999999999999999864422111113344556678899999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHH---------HhChh--HHHHHHh---------------hhhhhcCChHHH
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLME---------VSSPT--IIVERAG---------------SYAWTHRSWRVR 135 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e---------~~~p~--~v~e~ll---------------~~~~~~KnprVr 135 (1418)
.++|.++--.-|.--.|-.+|.+....... .+.++ .++.+++ ..-...|-.||.
T Consensus 124 ~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi 203 (1312)
T KOG0803|consen 124 SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVI 203 (1312)
T ss_pred hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHH
Confidence 999998877777776676666666655432 12222 1222221 123444778899
Q ss_pred HHHHHHHHHHHhhcCCCc-ch-h---hhhhH--HHHHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 136 EEFARTVTSAIGLFSATE-LT-L---QRAIL--PPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 136 ~~~l~~l~~~l~~fg~~~-l~-l---~k~ll--~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
..++.++...+...|... +. + .|.++ ..+-+++.+.++.||.+..+++..+...+-
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 999999999887777532 11 1 03333 356678899999999999999888776554
No 119
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.45 E-value=3.7 Score=50.12 Aligned_cols=166 Identities=14% Similarity=0.074 Sum_probs=113.3
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc--cch
Q 000565 329 QLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA--VRV 406 (1418)
Q Consensus 329 ~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~--~~l 406 (1418)
.++..+...+...-.+|....|+.|+.+....|.-=+..+..++..|.+.+-|.-+.+|-.|..||..+-+-.+. .++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 444445556667778899999999999999987644456777888888888888889999999999988877665 356
Q ss_pred HHHHHHHhhhCCCHHHHHHHH--------------------------HHHHHHHHhCCCCcc--ccccHHHHHHHHHHHh
Q 000565 407 LPRIADCAKNDRNAVLRARCC--------------------------EYALLVLEHWPDAPE--IQRSADLYEDLIRCCV 458 (1418)
Q Consensus 407 lp~l~~~l~~~Kn~~vR~~~~--------------------------e~L~~il~~~~~~~~--l~~~~~~l~~~l~~~l 458 (1418)
...+...++++++..||+.+. -+...++.++++... ++++ .-.+..++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kr----i~l~ewgl 246 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKR----ILLMEWGL 246 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccce----ehhhhhcc
Confidence 666667777888888888543 112223333332111 1111 11566799
Q ss_pred cCCChHHHHHHHHHHHHHHHHchh--HHHHHhccCCHHHHHHH
Q 000565 459 ADAMSEVRSTARMCYRMFAKTWPE--RSRRLFSSFDPAIQRII 499 (1418)
Q Consensus 459 ~Dad~eVR~~Ar~a~~~l~~~~p~--~a~~ll~~Ld~~~qk~L 499 (1418)
.|.+-.||.++..++..-+. .|+ ++-.++..||-+..+-+
T Consensus 247 ~dRe~sv~~a~~d~ia~~w~-~~~d~~lveLle~lDvSr~sv~ 288 (885)
T COG5218 247 LDREFSVKGALVDAIASAWR-IPEDLRLVELLEFLDVSRRSVL 288 (885)
T ss_pred hhhhhhHHHHHHHHHHHHhc-ccccccHHHHHHHHhhhhHHHH
Confidence 99999999999888754222 233 35567888887665544
No 120
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.41 E-value=0.29 Score=50.41 Aligned_cols=107 Identities=13% Similarity=0.333 Sum_probs=75.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHhhhhccCCChhhHHH--H
Q 000565 800 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYME--R 876 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~--~ 876 (1418)
....||.-=++ +-..+.+...+ -+..++.+.+||. ..|.+|+..+|..|-.++..+|..|+..+. .
T Consensus 14 l~~~dw~~ile----icD~In~~~~~-------~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~ 82 (141)
T cd03565 14 LQSEDWGLNME----ICDIINETEDG-------PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKD 82 (141)
T ss_pred CCCcCHHHHHH----HHHHHhCCCCc-------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45667865444 44444443322 2578889999998 468999999999999999999999985443 4
Q ss_pred HHHH-HHHhhC---CCchhhHHHHHHHHHHHHhcCCchhhhHHHH
Q 000565 877 ILPH-VFSRLI---DPKELVRQPCSTTLDIVSKTYSVDSLLPALL 917 (1418)
Q Consensus 877 ll~~-l~~klg---D~k~svr~~a~~~L~~~~~~~~~~~~l~~l~ 917 (1418)
++.. |++.+. +....|+.++.+++..|.+.|+.+..++.+.
T Consensus 83 Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 127 (141)
T cd03565 83 FIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVV 127 (141)
T ss_pred hhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHH
Confidence 4544 333333 3345799999999999999998775555433
No 121
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=7.1 Score=45.24 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=104.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHH-HHhhcccchHHHHHHHHHHHHHHHHhhhhHH-HH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCC-LDLLKDNNFKVSQGALQSLASAAVLSGEHFK-LH 79 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l-~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~-~~ 79 (1418)
|-++..++|.+-.....|.+++.++.-...+..-...+.- ++.| .+.++ .+..|+..+..||..++..-....+ ..
T Consensus 88 epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G-l~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 88 EPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG-LDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC-hHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhh
Confidence 3455666677766777777777766544332211111111 1122 23333 4456777888888888755211111 12
Q ss_pred HhhhHHHHHHHhCC-CChHHHHHHHHHHHHHHHHhC-hhHHH-----HHHhhhhhhcCChHHHHHHHHHHHHHHhh-cCC
Q 000565 80 FNALVPAVVERLGD-AKQPVRDAARRLLLTLMEVSS-PTIIV-----ERAGSYAWTHRSWRVREEFARTVTSAIGL-FSA 151 (1418)
Q Consensus 80 ~~~ilp~LleklgD-~k~~Vr~~a~~~L~~l~e~~~-p~~v~-----e~ll~~~~~~KnprVr~~~l~~l~~~l~~-fg~ 151 (1418)
...+.| +.||.. ....|+-.+..+|..|..... -..++ .-+. ..++..++-|++.|+..+..+.-. -..
T Consensus 166 sGaL~p--ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLV-sll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 166 SGALEP--LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLV-SLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred ccchhh--hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhh-hhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 233333 234544 344688889999998875321 11111 1222 367788999999999888764311 111
Q ss_pred Ccc-hhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 152 TEL-TLQRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 152 ~~l-~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
+.+ +-...++|.++.++.|+++.|+=.|..+|..+..
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 111 0113589999999999999999999888877754
No 122
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.17 E-value=0.36 Score=58.70 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHH
Q 000565 162 PPILQMLNDPNPGVREAAILCI 183 (1418)
Q Consensus 162 ~~l~~lL~D~~~~VR~aA~~~L 183 (1418)
+.+..++.|.|+.||.+|+..+
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444555555555554444
No 123
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=94.08 E-value=0.77 Score=48.23 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--cccChHhHHHHHHHHHHhh--------cccch---HH------HHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASR--KSLTSAEVTSLVDCCLDLL--------KDNNF---KV------SQGAL 62 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~--~~~~~~~~~~lv~~l~~~l--------~DsN~---~V------~~~al 62 (1418)
.+++..|.|.+-++|.+|+++|..++.... ..+....+..+++.|...+ ...+. .. ...+.
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 358899999999999999999999998765 4455556777777664322 22222 22 34456
Q ss_pred HHHHHHHHHhhhhHH-HHHhhhHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHhChhHHHHHH
Q 000565 63 QSLASAAVLSGEHFK-LHFNALVPAVVERLGDAK-QPVRDAARRLLLTLMEVSSPTIIVERA 122 (1418)
Q Consensus 63 ~~l~~l~~~l~~~~~-~~~~~ilp~LleklgD~k-~~Vr~~a~~~L~~l~e~~~p~~v~e~l 122 (1418)
.+|..+++..-..++ ..+..++..+.+-+.+.. ..+.-.+.+.+..+...++-...+++|
T Consensus 87 ~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL 148 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHL 148 (155)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHC
Confidence 666666666544444 478889999999988776 334444555555554444444444444
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.99 E-value=20 Score=43.99 Aligned_cols=362 Identities=16% Similarity=0.146 Sum_probs=198.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhH-HHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh-HHHHHHhhhhhhcCC
Q 000565 54 NFKVSQGALQSLASAAVLSGEHF-KLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-IIVERAGSYAWTHRS 131 (1418)
Q Consensus 54 N~~V~~~al~~l~~l~~~l~~~~-~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~-~v~e~ll~~~~~~Kn 131 (1418)
+.+-+...+.-|..++.. |+.| +..+..+.=++...+..+.+.+|....-++..+....... .....+++ -++.+.
T Consensus 37 s~r~~r~lls~l~yll~t-ge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMk-D~~~g~ 114 (898)
T COG5240 37 STRSARKLLSNLFYLLST-GELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMK-DLNGGV 114 (898)
T ss_pred ChHHHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHH-hhccCC
Confidence 444455555544444433 5666 5667777778887788888889988888887776542111 11233444 455566
Q ss_pred h-HHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHH
Q 000565 132 W-RVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKD 210 (1418)
Q Consensus 132 p-rVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~ 210 (1418)
| -+|..++..|..++. |....+ +=..+-..+-++.+.+|.+|.-.-..+|-..-..+++.+. ....+.++
T Consensus 115 ~~~~kp~AiRsL~~Vid--~~tv~~----~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~n--e~qeav~~- 185 (898)
T COG5240 115 PDDVKPMAIRSLFSVID--GETVYD----FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLN--ETQEAVLD- 185 (898)
T ss_pred ccccccHHHHHHHHhcC--cchhhh----HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHH--HHHHHHhh-
Confidence 6 688888888877765 222222 2233445677999999999865544444332233334332 11111111
Q ss_pred HHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccChHHHHH------
Q 000565 211 INARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIR------ 284 (1418)
Q Consensus 211 l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~------ 284 (1418)
++ +.|...|. .+|.+. | .++.-|..-.+.-
T Consensus 186 -------l~-q~p~~~~n-~gy~Pn--------------------------~---------~~isqYHalGlLyq~kr~d 221 (898)
T COG5240 186 -------LK-QFPNQHGN-EGYEPN--------------------------G---------NPISQYHALGLLYQSKRTD 221 (898)
T ss_pred -------Hh-hCcCccCC-cccCCC--------------------------C---------ChHHHHHHHHHHHHHhccc
Confidence 10 11111110 011100 0 0011111111111
Q ss_pred --HHHHhhhhcCCCCCHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Q 000565 285 --EFEKIGSTLVPDKDWSVRIAAM---QRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKE 359 (1418)
Q Consensus 285 --~l~~i~~~l~~~~dW~~R~~AL---~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~ 359 (1418)
.+.++...|......+-..+.+ +.+..++..+ +.|.. ++.+-|...++|.-..|--++...+..++..
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n----~q~~~---q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~ 294 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN----SQALL---QLRPFLNSWLSDKFEMVFLEAARAVCALSEE 294 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC----hHHHH---HHHHHHHHHhcCcchhhhHHHHHHHHHHHHh
Confidence 1334555554333333334444 3344444322 23322 2333333445666677888999999888876
Q ss_pred h-hhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCcc--chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 360 L-LGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV--RVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 360 l-g~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~--~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
- |.+| ....+..|-..+.....+.|=+|...|..+....+-. -.-+.+-+ +.++-|..+-.+ .+..++..
T Consensus 295 nv~~~~---~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs-LIsd~Nr~Isty---AITtLLKT 367 (898)
T COG5240 295 NVGSQF---VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES-LISDENRTISTY---AITTLLKT 367 (898)
T ss_pred ccCHHH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH-HhhcccccchHH---HHHHHHHc
Confidence 5 6655 5566666666667777778888888888877554321 11122222 225656555442 23333433
Q ss_pred CCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhc
Q 000565 437 WPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFS 489 (1418)
Q Consensus 437 ~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~ 489 (1418)
++. ..++.|++.|...+.|-.-+-+..+..++..|.-.||.+-..++.
T Consensus 368 -Gt~----e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~ 415 (898)
T COG5240 368 -GTE----ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLD 415 (898)
T ss_pred -Cch----hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHH
Confidence 332 346778888999999999999999999999999999987665443
No 125
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=24 Score=44.56 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 13 TKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 13 Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
--.|..+.-+|..++...++.+.. +...+-+..+++|....|..++...+..++++..+..+.++.
T Consensus 162 ~~vkqkaALclL~L~r~spDl~~~---~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLVNP---GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred HHHHHHHHHHHHHHHhcCccccCh---hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 445666777788888765544333 344555566789999999999999999999887666555433
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=1.3 Score=56.36 Aligned_cols=201 Identities=17% Similarity=0.126 Sum_probs=127.9
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 1266 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~ 1266 (1418)
+.+.+..+-+. ...-|..|+..|+.+++.-..... ..-..++..+++.++|.++-|=-.|.+.+..+|.-
T Consensus 729 ~qeai~sl~d~---qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 729 LQEAISSLHDD---QVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHhcCC---cccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 34444444433 246899999999999985543322 24677888999999999998888888888888863
Q ss_pred ccHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHhhcChh------hHHHhhhhhccccchhhHHHHHHHHHHHHh
Q 000565 1267 DSVEIVIEKLLHVTKDAV-----PKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKLVG 1335 (1418)
Q Consensus 1267 ~~~e~~l~~ll~~~~d~~-----~~V~~aA~~al~~i~~~~~p~------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~ 1335 (1418)
|-+.+||.+.+-|-+.. +.+..-+|..++. +...++- .++.....+++..+..-|..++..++.+..
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~-~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKV-AQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHH-HHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 77889999998775432 2333444444443 3333332 233333444443344446666665555554
Q ss_pred hcC---HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHHHHHHHHH
Q 000565 1336 RLS---QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYA 1402 (1418)
Q Consensus 1336 ~~~---~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~kll~~yi 1402 (1418)
... .+.+..++.-|+- -...|.+.-||+|||.-++.+-.-.|+++.|++..+.--..+.+.-|.
T Consensus 877 ~~a~~vsd~~~ev~~~Il~---l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~v 943 (982)
T KOG4653|consen 877 LLAFQVSDFFHEVLQLILS---LETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYV 943 (982)
T ss_pred HHhhhhhHHHHHHHHHHHH---HHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 332 4555555544432 223599999999999999999999999999977555444444444443
No 127
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.91 E-value=0.44 Score=48.62 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHH--HHH
Q 000565 801 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RIL 878 (1418)
Q Consensus 801 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~--~ll 878 (1418)
...||. +...+-.++.+... .-+..++.+.++|..+|.+|...+|..|-.++..++..|+..+. .+|
T Consensus 14 ~~~D~~----~il~icd~I~~~~~-------~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl 82 (133)
T cd03561 14 EEPDWA----LNLELCDLINLKPN-------GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFL 82 (133)
T ss_pred CCccHH----HHHHHHHHHhCCCC-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHH
Confidence 456664 34445555655433 33578899999999999999999999999999999998864443 344
Q ss_pred HHHHHhhC---CCchhhHHHHHHHHHHHHhcCCch
Q 000565 879 PHVFSRLI---DPKELVRQPCSTTLDIVSKTYSVD 910 (1418)
Q Consensus 879 ~~l~~klg---D~k~svr~~a~~~L~~~~~~~~~~ 910 (1418)
..|++-+. .....||.++.+++..|...|+.+
T Consensus 83 ~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 83 LELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44443333 346679999999999999999876
No 128
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.91 E-value=0.46 Score=48.53 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHH--HH
Q 000565 800 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RI 877 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~--~l 877 (1418)
....||.. ...+-..+.+... .-+..++.+.++|..+|.+|...+|..|-.++..+|..|+..+. .+
T Consensus 13 l~~~dw~~----~l~icD~i~~~~~-------~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~f 81 (133)
T smart00288 13 LLEEDWEL----ILEICDLINSTPD-------GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEF 81 (133)
T ss_pred CCCcCHHH----HHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHH
Confidence 34667754 3344555555533 23578899999999999999999999999999999998865542 34
Q ss_pred HHHHHHhhCCC--chhhHHHHHHHHHHHHhcCCchhhhHHHH
Q 000565 878 LPHVFSRLIDP--KELVRQPCSTTLDIVSKTYSVDSLLPALL 917 (1418)
Q Consensus 878 l~~l~~klgD~--k~svr~~a~~~L~~~~~~~~~~~~l~~l~ 917 (1418)
+..|.+-+.+. .+.|+.++.+++..|...|..+--++.+.
T Consensus 82 l~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~ 123 (133)
T smart00288 82 LNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIV 123 (133)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHH
Confidence 55444433322 22399999999999999996554444443
No 129
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=1.7 Score=55.03 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=110.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHH-HHhhh
Q 000565 5 LELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL-HFNAL 83 (1418)
Q Consensus 5 l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~-~~~~i 83 (1418)
-.++.++.-+.|.+|+..+...+.. ..++..++.-+.+.+.-.|.......-.-+...+.. ++ .....
T Consensus 19 ks~l~s~~~~kr~~a~kkvIa~Mt~------G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-----~P~~a~~a 87 (734)
T KOG1061|consen 19 KSQLNSQSKEKRKDAVKKVIAYMTV------GKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-----KPDLAILA 87 (734)
T ss_pred HHHhhhhhhhhHHHHHHHHHhcCcc------CcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-----CchHHHhh
Confidence 3444444446777777666554432 234556666666666666655555554455544432 22 12334
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHH
Q 000565 84 VPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPP 163 (1418)
Q Consensus 84 lp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~ 163 (1418)
++.++.-++|.++.+|-.|...+..+--.--...+++.+.. ++++++|-||..+..++..+...-+....+ ..+++.
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~-~l~d~~~yvRktaa~~vakl~~~~~~~~~~--~gl~~~ 164 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLK-CLKDDDPYVRKTAAVCVAKLFDIDPDLVED--SGLVDA 164 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHhhcCChhhccc--cchhHH
Confidence 56677778999999999888766554321112344555555 899999999998877776544332222222 368888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 164 ILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 164 l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
+..++.|.+|.|-..|..+|.+|...-.
T Consensus 165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 165 LKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999987653
No 130
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.81 E-value=0.59 Score=54.82 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcccccccc--HHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhh--cChhhHHHhhhhhccccchhhH
Q 000565 1249 VALSLINEMLKNQKDVMEDS--VEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTL 1323 (1418)
Q Consensus 1249 ~aL~~L~~l~~~~~~~~~~~--~e~~l~~ll-~~~~d~~~~V~~aA~~al~~i~~~--~~p~~~l~~l~~~l~s~~~~~~ 1323 (1418)
.||.+++.|+++....+.+. ++.++..++ -+..+....||+.|.+|+...+-. -.....+.++...+..+....+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 48899999999888777764 557888877 578888899999999999866533 2223466666677766677889
Q ss_pred HHHHHHHHHHHhhcCHHHHHhhhh--------hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1324 VTCINCLTKLVGRLSQEELMAQLP--------SFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1324 ~~alk~l~~lv~~~~~~~l~~~L~--------~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
..|++.+.-++-.+|.+.+...-. .++..+.+.+++.++++|..|+.++..+.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999998999887765543 78889999999999999999999977755
No 131
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=1.3 Score=55.29 Aligned_cols=174 Identities=21% Similarity=0.237 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHh-
Q 000565 1202 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT- 1280 (1418)
Q Consensus 1202 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~- 1280 (1418)
-..|...++-|+.++.+. ....+..|+.+...++..+.|+.+.||..|+.+|..+ |+..-++-.+ +...+...+
T Consensus 99 k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl---Q~d~~dee~~-v~n~l~~liq 173 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL---QGDPKDEECP-VVNLLKDLIQ 173 (892)
T ss_pred hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH---hcCCCCCccc-HHHHHHHHHh
Confidence 368999998776666643 3334457999999999999999999999887776654 3333222211 223333333
Q ss_pred cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHH-HHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000565 1281 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCI-NCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1281 ~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~al-k~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d 1359 (1418)
.||..+||++|..++.. -...++.+..--++-+...|..++ .++.++ +.-...++ ..+--+..|+.|
T Consensus 174 nDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~----krv~LlewgLnD 241 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNISV------DNSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSID----KRVLLLEWGLND 241 (892)
T ss_pred cCCcHHHHHHHHHhhcc------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHH----HHHHHHHHhhhh
Confidence 58999999999887641 122332322222233334444444 333333 11112222 122356677777
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh-cccccccccCh
Q 000565 1360 QSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNS 1392 (1418)
Q Consensus 1360 ~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~ 1392 (1418)
++-+|++|++..+..=|.-+.+ .+.-.|.+|+.
T Consensus 242 Re~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldv 275 (892)
T KOG2025|consen 242 REFSVKGALVDAILSGWLRFSDGNILELLERLDV 275 (892)
T ss_pred hhhHHHHHHHHHHHHHHhhhccccHHHHHHHhcc
Confidence 7777777777777777766664 55555555543
No 132
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.76 E-value=0.96 Score=51.43 Aligned_cols=168 Identities=13% Similarity=0.199 Sum_probs=105.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHH-hhcc-cchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLD-LLKD-NNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~-~l~D-sN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+...|.+++-+.|..|+..|..+.....+ ...+..++..+.. .+.+ .|..++..|+.+|..+... ......+.
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~ 133 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDEN---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLA 133 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhh---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHH
Confidence 45566788999999999999876543221 1223444444433 2333 4888999999999998522 22233344
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhH--------HHHHHhhhhhhcCC-hHHHHHHHHHHHHHHhhcCCC
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI--------IVERAGSYAWTHRS-WRVREEFARTVTSAIGLFSAT 152 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~--------v~e~ll~~~~~~Kn-prVr~~~l~~l~~~l~~fg~~ 152 (1418)
..+|.++.-|......+|..+..+|..+.+. |+. ++..++. .|..+. --+...++.++..+-+.+...
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~Ll~~q~~~~~~~-Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTRELLSAQVLSSFLS-LFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHHHhccchhHHHH-HHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 5566777666666667899999999998864 322 2233333 344443 356777777777765554432
Q ss_pred c-------ch---h------hhhhHHHHHHhcCCCChhHHHHH
Q 000565 153 E-------LT---L------QRAILPPILQMLNDPNPGVREAA 179 (1418)
Q Consensus 153 ~-------l~---l------~k~ll~~l~~lL~D~~~~VR~aA 179 (1418)
. ++ + .+.+.+.+..++.|++++||+..
T Consensus 211 ~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 211 AYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 1 11 1 14577777888899999998753
No 133
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.74 E-value=0.52 Score=58.88 Aligned_cols=112 Identities=11% Similarity=0.221 Sum_probs=86.1
Q ss_pred HHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhh---hhhhcCChHHHHHHHHHHHHHHhhcCCCcch
Q 000565 79 HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLFSATELT 155 (1418)
Q Consensus 79 ~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~---~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~ 155 (1418)
|-..++|.|+..++-....||-.-.+-+..+++.++++.+-+.+++ .|+.+.|+-+|+.++..+..++...+...+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 6666888888888887777888888888888888777766555543 4888889999999888888888877776554
Q ss_pred hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcCh
Q 000565 156 LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP 192 (1418)
Q Consensus 156 l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~ 192 (1418)
-+++..+..+-.|.++.+|....-|++++-.++.+
T Consensus 407 --~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~ 441 (690)
T KOG1243|consen 407 --GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA 441 (690)
T ss_pred --HHHHHHHHhhCccccCcccccceeeecccccccch
Confidence 47778887777788888888888888877655443
No 134
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.40 E-value=0.69 Score=47.75 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHH--HHHH
Q 000565 801 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERIL 878 (1418)
Q Consensus 801 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l--~~ll 878 (1418)
...||..=+ .+-+.+.+... .-...++.+.++|...|.+|...+|+.|-.++..+|..|+..+ +.++
T Consensus 18 ~~~dw~~il----eicD~In~~~~-------~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 18 GEPDLASIL----EICDMIRSKDV-------QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred CccCHHHHH----HHHHHHhCCCC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 466775433 34444544332 2357889999999999999999999999999999999886433 2344
Q ss_pred HHHHHhhC-CCchhhHHHHHHHHHHHHhcCCchhhhHHHH
Q 000565 879 PHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALL 917 (1418)
Q Consensus 879 ~~l~~klg-D~k~svr~~a~~~L~~~~~~~~~~~~l~~l~ 917 (1418)
..|.+-+. .....|+.++..++..|...|..+..++.+.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 126 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVV 126 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 43333332 5677899999999999999998776544443
No 135
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.29 E-value=1.6 Score=49.03 Aligned_cols=205 Identities=14% Similarity=0.210 Sum_probs=107.4
Q ss_pred hHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHH
Q 000565 279 EKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD--RRSSIVKQACHLLCFL 356 (1418)
Q Consensus 279 ~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D--~rs~V~~~A~~~l~~L 356 (1418)
.+||.-.+++++..+..+.+-+.|-+||+.|+. + +.+.+.+..++.-|..++.. .|-+ .+.++-.+
T Consensus 192 sKELq~YF~kvisal~dEs~~~~r~aAl~sLr~-------d-sGlhQLvPYFi~f~~eqit~Nl~nl~----~LtTv~~m 259 (450)
T COG5095 192 SKELQMYFDKVISALLDESDEQTRDAALESLRN-------D-SGLHQLVPYFIHFFNEQITKNLKNLE----KLTTVVMM 259 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------C-ccHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHH
Confidence 467777889999888778889999999998862 1 11111122222222222211 1122 23333333
Q ss_pred HHHh-hhh---HHHHHHHHHHHHHHHh-----ccch-----HHHHHHHHHHHHHHHHhCCc------cchHHHHHHHhh-
Q 000565 357 SKEL-LGD---FEACAEMFIPVLFKLV-----VITV-----LVIAESSDNCIKTMLRNCKA------VRVLPRIADCAK- 415 (1418)
Q Consensus 357 a~~l-g~~---f~~~~~~llp~Ll~~~-----~~~~-----~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l~- 415 (1418)
+..+ .+. .+||+..+||.++..+ ++.. ..+|+-|..-+..++.+.+. +|+...++++..
T Consensus 260 ~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD 339 (450)
T COG5095 260 YSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred HHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHh
Confidence 3333 332 5899999999877543 3332 33788888888888887753 355555444442
Q ss_pred hCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-------H-chhHHHHH
Q 000565 416 NDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAK-------T-WPERSRRL 487 (1418)
Q Consensus 416 ~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~-------~-~p~~a~~l 487 (1418)
..|.-.....|...|..+-...-.. .+...++.++..+.+.+...+.+--..+-.|...+.. - .|+
T Consensus 340 ~~k~~sT~YGalkgls~l~ke~ir~-~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpn----- 413 (450)
T COG5095 340 REKTESTQYGALKGLSILSKEVIRT-VIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPN----- 413 (450)
T ss_pred cccccchhhhhhhhhhhhchhheee-eeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCC-----
Confidence 2233333444545544433332111 2222344555555555555544444444444444433 2 233
Q ss_pred hccCCHHHHHHHhh
Q 000565 488 FSSFDPAIQRIINE 501 (1418)
Q Consensus 488 l~~Ld~~~qk~L~~ 501 (1418)
-..+||..-+.|+.
T Consensus 414 qr~~~~n~~~llek 427 (450)
T COG5095 414 QRTLPPNASGLLEK 427 (450)
T ss_pred ccCCCCcHHHHHHH
Confidence 23456666666665
No 136
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=93.28 E-value=0.6 Score=46.29 Aligned_cols=97 Identities=11% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHH--HHH
Q 000565 801 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RIL 878 (1418)
Q Consensus 801 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~--~ll 878 (1418)
...+|..-...+..|-.+...... ....+++.+.+|+.++|.+|...+|..|-.++..+++.|+.++. .++
T Consensus 10 ~~~~~~p~~~~i~~i~d~~~~~~~-------~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 10 SNENMGPDWPLIMEICDLINETNV-------GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCc-------cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 455666666777777777766533 34679999999999999999999999999999999999987663 334
Q ss_pred HHHHH----h-hC-CCchhhHHHHHHHHHHHH
Q 000565 879 PHVFS----R-LI-DPKELVRQPCSTTLDIVS 904 (1418)
Q Consensus 879 ~~l~~----k-lg-D~k~svr~~a~~~L~~~~ 904 (1418)
..+++ + .| +.-..||.++.+++..|.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 44432 2 34 556789999999999885
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.10 E-value=0.61 Score=61.28 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 000565 301 VRIAAMQRVEGLVLGGAADHPCFRGLLKQ-LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLV 379 (1418)
Q Consensus 301 ~R~~AL~~L~~ll~~~~~~~~~f~~~L~~-L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~ 379 (1418)
+|..|...|.-+....+..+..++.+|.+ |+.+|.. .-|.+. -....++.+..++..++..+.+ .-..+|.|+..+
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~-~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSG-LIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhc-cCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 35555555554444322222333334433 2233332 223342 2233456677777778877777 777889999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCcc---chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHH
Q 000565 380 VITVLVIAESSDNCIKTMLRNCKAV---RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRC 456 (1418)
Q Consensus 380 ~~~~~vi~~sa~~al~~i~~~~~~~---~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~ 456 (1418)
......+|.++..|+..+....... .++..+.-.+ .+-..-+|+..+..+-.++...... .+..+...++..|..
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll-~~~~~~~~r~~a~e~~~~l~~~l~~-~l~~~~~Llv~pllr 903 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL-GDLDKFVRRQGADELIELLDAVLMV-GLVPYNPLLVVPLLR 903 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHhhhhhHHHHHHHHHHhhcc-cccccceeehhhhhc
Confidence 9888899999999999998866532 2222222222 2323456666666666555554332 344556677888889
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHchhHH
Q 000565 457 CVADAMSEVRSTARMCYRMFAKTWPERS 484 (1418)
Q Consensus 457 ~l~Dad~eVR~~Ar~a~~~l~~~~p~~a 484 (1418)
++.|.+..||.+|-++|..+....|.++
T Consensus 904 ~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 904 RMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred ccccchHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999988877665
No 138
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.09 E-value=0.49 Score=47.13 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHH---HHHHHHHHhc---
Q 000565 1208 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI---VIEKLLHVTK--- 1281 (1418)
Q Consensus 1208 al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~---~l~~ll~~~~--- 1281 (1418)
.+.+|.++..+.. ..|..++..|++.|++++.-|...||.+|.++|..-+..|..++.- ++-.+.+--|
T Consensus 21 ~~~Eia~~t~~s~-----~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRKSV-----GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHcCH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 3445555555421 2478899999999999888899999999999999877667665432 3333333222
Q ss_pred -----CCcHHHHHHHHHHHHHHHh
Q 000565 1282 -----DAVPKVSNEAEHCLTVVLS 1300 (1418)
Q Consensus 1282 -----d~~~~V~~aA~~al~~i~~ 1300 (1418)
+..+.||.+|.+++.+|..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 3568999999999998754
No 139
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.88 E-value=8.9 Score=48.23 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc--c
Q 000565 327 LKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA--V 404 (1418)
Q Consensus 327 L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~--~ 404 (1418)
+..++..+.......-.+|.-..|++|+.|....+.-=+..+..+...|+..+.|.-+.+|-.|..||..+-.-..- -
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 34455555556666666788888888888876444333456778888899999999999999999998887654332 2
Q ss_pred chHHHHHHHhhhCCCHHHHHHHHHHHH-------HHHHhCCCCcc-------------c---cccHHHHHHHHHHHhcCC
Q 000565 405 RVLPRIADCAKNDRNAVLRARCCEYAL-------LVLEHWPDAPE-------------I---QRSADLYEDLIRCCVADA 461 (1418)
Q Consensus 405 ~llp~l~~~l~~~Kn~~vR~~~~e~L~-------~il~~~~~~~~-------------l---~~~~~~l~~~l~~~l~Da 461 (1418)
.+...+...+.+|.|+.||+.+.-.+. .++++.-+... + .-.++..+-.+..+++|.
T Consensus 163 ~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDR 242 (892)
T KOG2025|consen 163 PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDR 242 (892)
T ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhh
Confidence 555666666678999999986542221 12222111000 0 011234455677899999
Q ss_pred ChHHHHHHHHHHHH
Q 000565 462 MSEVRSTARMCYRM 475 (1418)
Q Consensus 462 d~eVR~~Ar~a~~~ 475 (1418)
+-.||.++.+++..
T Consensus 243 e~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 243 EFSVKGALVDAILS 256 (892)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998754
No 140
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.80 E-value=1.2 Score=54.26 Aligned_cols=115 Identities=14% Similarity=0.006 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhh
Q 000565 1232 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1311 (1418)
Q Consensus 1232 l~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l 1311 (1418)
+..|++.+.|.+..||..+...|..|= -.-..+.|+..+.|....|+.++-.++...- ....+.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----~~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----HDPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cChHHHH
Confidence 457888888888888887766665421 1124556667778888899988775554411 1234566
Q ss_pred hhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000565 1312 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1372 (1418)
Q Consensus 1312 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~l 1372 (1418)
.+.|.+.++..+..|+..|+.+-. +..+|.|..++.|.+++||.+|+.++
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 677878888899999998887652 34456778889999999999999997
No 141
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.65 E-value=0.98 Score=47.97 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhH-------HHhhhhhccc-cchhhHHHHHHHHHHHHhhcC--
Q 000565 1269 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC-------LSVIVPLLVT-EDEKTLVTCINCLTKLVGRLS-- 1338 (1418)
Q Consensus 1269 ~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~-------l~~l~~~l~s-~~~~~~~~alk~l~~lv~~~~-- 1338 (1418)
+.-+..++...+.++...-+..|...++.++...+++.+ +..+..+|+. ....++..|+..++.++....
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444666777888888889999999999999999877754 4444455543 344567888899998887763
Q ss_pred ----HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHHHHH
Q 000565 1339 ----QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLV 1398 (1418)
Q Consensus 1339 ----~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~kll 1398 (1418)
++.+-+++|.+++.+.+..++ .++...+..++-.+..+.+.-++||-.++...-..+|
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 455677899999999998887 8889999999999999888999999988766554443
No 142
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.41 E-value=5.4 Score=41.00 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=77.8
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh
Q 000565 284 REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 284 ~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
+.+++.......+.||..-++-.+.|. ... .. -++-+.+|.+++...|..|+..|+.+|..+.+.+|..
T Consensus 4 ~~iekAT~~~l~~~dw~~ileicD~In----~~~-~~------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~ 72 (139)
T cd03567 4 AWLNKATNPSNREEDWEAIQAFCEQIN----KEP-EG------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER 72 (139)
T ss_pred HHHHHHcCccCCCCCHHHHHHHHHHHH----cCC-cc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH
Confidence 345666666667899977666666554 211 11 2567788899999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHhCC
Q 000565 364 FEACA--EMFIPVLFKLVVI------TVLVIAESSDNCIKTMLRNCK 402 (1418)
Q Consensus 364 f~~~~--~~llp~Ll~~~~~------~~~vi~~sa~~al~~i~~~~~ 402 (1418)
|...+ ..|+..|++++.. +...|++-....|..|.....
T Consensus 73 fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 73 FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 97643 4588888888853 345566667777776665543
No 143
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.10 E-value=3.6 Score=42.55 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=74.8
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
+++.......+.||..-++--+.|. .. ... -++.+.+|.+++...|..|+..|+.+|..+.+.+|..|.
T Consensus 5 iekATse~l~~~dw~~il~icD~I~----~~-~~~------~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 5 VEKATDEKLTSENWGLILDVCDKVK----SD-ENG------AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred HHHHcCccCCCcCHHHHHHHHHHHh----cC-Ccc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 5566666566789976666555554 22 111 256788899999999999999999999999999999997
Q ss_pred HHH--HHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhCC
Q 000565 366 ACA--EMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNCK 402 (1418)
Q Consensus 366 ~~~--~~llp~Ll~~~~~-~~~vi~~sa~~al~~i~~~~~ 402 (1418)
..+ +.|+..|.+.+.. ....|++-....|..|.....
T Consensus 74 ~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 74 QEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 543 3577777777665 445566666666666655443
No 144
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=3.2 Score=49.16 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=99.4
Q ss_pred CHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhc-ccc
Q 000565 1186 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KDV 1264 (1418)
Q Consensus 1186 ~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~-~~~ 1264 (1418)
.+.+++.++.-+| ...|.+|+..|..++..... ...-+...++..+.+.+-|.+..||.....++..+.-.. +..
T Consensus 59 tlkeLl~qlkHhN---akvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 59 TLKELLSQLKHHN---AKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred cHHHHHhhhcCch---HhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 3789999998887 47999999999999998433 333478888888889888999999998888888854443 344
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHH
Q 000565 1265 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCL 1308 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l 1308 (1418)
+.+++-++++-+.-++-+...+|+..+-.-+..++..|+|.-+.
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 78999999999999999999999999999999999999997433
No 145
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.09 E-value=64 Score=44.53 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=75.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNAL 83 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~i 83 (1418)
++.-+....-..|-.|+.+|..+++..+.-+..++++ .++-..+.|+...|.++|++.++.++-.-++....|
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq---~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy---- 893 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQ---EAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY---- 893 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHH---HHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH----
Confidence 4555667889999999999999887543222223333 344457889999999999999998764434444444
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 000565 84 VPAVVERLGDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 84 lp~LleklgD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
-..+.+|+.|.-..||..+...|..+|+.
T Consensus 894 Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 894 YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999975
No 146
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.08 E-value=22 Score=42.93 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC------CCcc---hHHHHHHHH-HHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 296 DKDWSVRIAAMQRVEGLVLGGA------ADHP---CFRGLLKQL-VGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 296 ~~dW~~R~~AL~~L~~ll~~~~------~~~~---~f~~~L~~L-~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
..||+.+-.|+..+.++...+. .+.. ++.+.+... .+-|. .-.+...-+...||..+..+-..+.+
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--- 341 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--- 341 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---
Confidence 4679988888888888875332 1111 222222221 12222 11133444677778887777666543
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 000565 366 ACAEMFIPVLFKLVVITVLVIAESSDNCI 394 (1418)
Q Consensus 366 ~~~~~llp~Ll~~~~~~~~vi~~sa~~al 394 (1418)
.....++|.|++.+.+...++.+-|..||
T Consensus 342 ~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 36778999999999999999998887765
No 147
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=4.5 Score=51.83 Aligned_cols=186 Identities=19% Similarity=0.237 Sum_probs=121.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
..+.-+.++..-.|..|+..|..++++-.+. ....-..+++.....++|.+.=|-..++..+..+++. |=..
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~-~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~ 802 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKA-TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPED 802 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchh
Confidence 4556677888999999999999999864321 1122346677778889999999999999988888865 4456
Q ss_pred hHHHHHHHhCCCCh----HHHHHHHHHHHHHHHHhChh------HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhh--cC
Q 000565 83 LVPAVVERLGDAKQ----PVRDAARRLLLTLMEVSSPT------IIVERAGSYAWTHRSWRVREEFARTVTSAIGL--FS 150 (1418)
Q Consensus 83 ilp~LleklgD~k~----~Vr~~a~~~L~~l~e~~~p~------~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~--fg 150 (1418)
++|-+.+--...|. .-|-..-++++.+++..++- .++.-.+. |..+..-+-|...+..+..+... |+
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~-gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLS-GVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 77877774322111 12333445666665543331 22233333 55544446688888888877664 33
Q ss_pred CCcchhhhhhHHHHHHhc-CCCChhHHHHHHHHHHHHHHhcChhHHHhhh
Q 000565 151 ATELTLQRAILPPILQML-NDPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1418)
Q Consensus 151 ~~~l~l~k~ll~~l~~lL-~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~ 199 (1418)
... .+ -+.+..++... .|..+-||.+|..++..+..-.|.++.+.+.
T Consensus 882 vsd-~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 882 VSD-FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred hhH-HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 322 12 23444444333 5999999999999999999999988766553
No 148
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=91.94 E-value=3.1 Score=47.35 Aligned_cols=186 Identities=22% Similarity=0.251 Sum_probs=118.5
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCC--hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND--HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 1264 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~--~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~ 1264 (1418)
+..++..|...++ +..+..++-.+... .... ...+. .+ ..+..+...+.++++.+|+.||..|..|...- .
T Consensus 14 l~~Ll~lL~~t~d--p~i~e~al~al~n~-aaf~~nq~~Ir-~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~--e 86 (254)
T PF04826_consen 14 LQKLLCLLESTED--PFIQEKALIALGNS-AAFPFNQDIIR-DL-GGISLIGSLLNDPNPSVREKALNALNNLSVND--E 86 (254)
T ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHhh-ccChhHHHHHH-Hc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh--h
Confidence 6778888877664 56666666555442 2111 11222 12 24556788899999999999999999875432 2
Q ss_pred ccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhhc--Ch--hhHHHhhhhhccccchhhHHHHHHHHHHHHhhcC
Q 000565 1265 MEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQY--DP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 1338 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~--d~~~~V~~aA~~al~~i~~~~--~p--~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~ 1338 (1418)
....++..++.+++... ...-.++.++-.++..+.--- +. ...++.+.++|.+++..++.-++++|..|.+.-.
T Consensus 87 n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 22334555666665432 224588888888887664221 11 1356666778888888999999999988875432
Q ss_pred --HHHHHhhhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhc
Q 000565 1339 --QEELMAQLPSFLPALFEAFGN-QSADVRKTVVFCLVDIYIMLGKA 1382 (1418)
Q Consensus 1339 --~~~l~~~L~~l~p~l~~~~~d-~~seVRkaAv~~lv~~~~~lg~~ 1382 (1418)
++.+. ....+.+..-|+. ...++--.++..+..+..++..+
T Consensus 167 ~~~~Ll~---~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 167 MTRELLS---AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHh---ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 22232 2344556666665 47888888888888887777754
No 149
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=2.6 Score=57.17 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCC------------hHHH------HHHHHHHHHHHHhcc--
Q 000565 1203 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD------------SSVR------EVALSLINEMLKNQK-- 1262 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~------------~~vr------~~aL~~L~~l~~~~~-- 1262 (1418)
.+|.-+..++...+.+.--..+..+|+-++......|+..| .+.| ..++..+..+...--
T Consensus 1409 ~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~ 1488 (1621)
T KOG1837|consen 1409 LERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIE 1488 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhH
Confidence 46777788888888777655666788888877655553221 1122 234444444433211
Q ss_pred -----ccccccHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---ccchhhHHHHHHHHHH
Q 000565 1263 -----DVMEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTK 1332 (1418)
Q Consensus 1263 -----~~~~~~~e~~l~~ll~~~--~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~ 1332 (1418)
++++--..+++..+++.. ....+.|......|+-.+..+ .+...-+++..++. +..-+.+..||..+..
T Consensus 1489 ~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~ 1567 (1621)
T KOG1837|consen 1489 SFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKL 1567 (1621)
T ss_pred HHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122222334555555522 233455666666666555543 34346666666663 3445789999999999
Q ss_pred HHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 000565 1333 LVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1387 (1418)
Q Consensus 1333 lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l 1387 (1418)
+++.++ |....+||.++|.|.+-|+|.+-+|--.++...=-+=.++||-++.|+
T Consensus 1568 l~~~lg-e~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1568 LYTKLG-ENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHHHhc-chhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 999999 777789999999999999999999999999977777788998777664
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.80 E-value=8.1 Score=48.46 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhC
Q 000565 13 TKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLG 92 (1418)
Q Consensus 13 Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Lleklg 92 (1418)
-+++.-|.+-|-.+++..+. --..-++.+..++.|....|+..|+..|-.+++.- ..++..|+..|++.|.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHHHh
Confidence 44444444445444443221 11344556666788899999999998888887542 3467777888888887
Q ss_pred CCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhh--hcCChHHHHHHHHHHHHHHhhcCCCcch----hhhhhHHHHHH
Q 000565 93 DAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAW--THRSWRVREEFARTVTSAIGLFSATELT----LQRAILPPILQ 166 (1418)
Q Consensus 93 D~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~--~~KnprVr~~~l~~l~~~l~~fg~~~l~----l~k~ll~~l~~ 166 (1418)
.......+.+..+|+.++.. .|...+..++.... ..-...||+.++.+|..-+...+...+. ..+.++..+.+
T Consensus 107 tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikk 185 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKK 185 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHH
Confidence 76777889999999999975 45555555544222 1334579999999998877766665554 22346667778
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhc
Q 000565 167 MLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 167 lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
.|+| |=..=+.++..+.+++
T Consensus 186 vL~D----VTaeEF~l~m~lL~~l 205 (556)
T PF05918_consen 186 VLQD----VTAEEFELFMSLLKSL 205 (556)
T ss_dssp HCTT------HHHHHHHHHHHHTS
T ss_pred HHHh----ccHHHHHHHHHHHHhC
Confidence 8887 3333344455554443
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.77 E-value=2.1 Score=53.47 Aligned_cols=123 Identities=18% Similarity=0.304 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHH
Q 000565 1229 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCL 1308 (1418)
Q Consensus 1229 ~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l 1308 (1418)
++.+..+++++.|.+..||..|+.-|-.+|+..+ +|+.-+.--|.+++.--......+...++..+... +|...|
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL 132 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTL 132 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 5567789999999999999999999999998643 33333334444455544467778888888888876 777777
Q ss_pred Hhhhhhcc---ccchhhHHHHHHHHHHHHhhcCH------HHHHhhhhhhHHHHHHHhcC
Q 000565 1309 SVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQ------EELMAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1309 ~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~------~~l~~~L~~l~p~l~~~~~d 1359 (1418)
..|...|. +.+..++..+|++|..=+..+++ ++++.+ |+..+.+.+.|
T Consensus 133 ~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~---i~~~ikkvL~D 189 (556)
T PF05918_consen 133 TGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF---IVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH---HHHHHHHHCTT
T ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH---HHHHHHHHHHh
Confidence 77766665 56777899999998544444543 444433 34456667766
No 152
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.59 E-value=4.1 Score=46.62 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHh
Q 000565 1203 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 1280 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~--~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~ 1280 (1418)
.--..++..+..+++...+.. +....++..+.+-..-. -...|..++.+|..++.+....+...-..++..+++.+
T Consensus 55 ~~~~~~l~gl~~L~~~~~~~~--~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 55 ACVQPALKGLLALVKMKNFSP--ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred hhHHHHHHHHHHHHhCcCCCh--hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 444555677766665544333 34677777777655432 34499999999999998765555555556677777766
Q ss_pred -cCCcHHHHHHHHHHHHHHHhhcChhh----HHHhh---hhhc-c-ccchhhHHHHHHHHHHHHhhcCH-HHHHhhhhhh
Q 000565 1281 -KDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVI---VPLL-V-TEDEKTLVTCINCLTKLVGRLSQ-EELMAQLPSF 1349 (1418)
Q Consensus 1281 -~d~~~~V~~aA~~al~~i~~~~~p~~----~l~~l---~~~l-~-s~~~~~~~~alk~l~~lv~~~~~-~~l~~~L~~l 1349 (1418)
|.+.+.-..-+=..++.++..++... +..++ -|+- + ..+.|..+..-++-..|-+-+.. +.+ -+..
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f---a~~~ 209 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF---APFA 209 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh---HHHH
Confidence 33334445555666667777766543 33333 2332 1 22333233333333333322222 222 3677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-cccccccccCh
Q 000565 1350 LPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNS 1392 (1418)
Q Consensus 1350 ~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~ 1392 (1418)
+|.|.+-++.+.+.|+.-+..+|.+....+|. .+.||+..+=.
T Consensus 210 ~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999995 78999876633
No 153
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.58 E-value=4.5 Score=42.94 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=96.2
Q ss_pred hHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-hhhHHHHHhhhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHh
Q 000565 36 SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS-GEHFKLHFNALVPAVVERLGDA-KQPVRDAARRLLLTLMEVS 113 (1418)
Q Consensus 36 ~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l-~~~~~~~~~~ilp~LleklgD~-k~~Vr~~a~~~L~~l~e~~ 113 (1418)
...++.++.-+...+.+++..-.-.|+..+..+++.. .+.|..+....+..|+..|... ...+++.+..+|..++...
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467788888888999999999999999999999887 5678788888888888888653 4456788888887777542
Q ss_pred ChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh
Q 000565 114 SPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ 193 (1418)
Q Consensus 114 ~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~ 193 (1418)
.++.--+|+-+. .. + ..+++.+++++++ ..+.+.+..+|..+..+....
T Consensus 100 --------------~~~p~l~Rei~t------------p~--l-~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 100 --------------RGKPTLTREIAT------------PN--L-PKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred --------------cCCCchHHHHhh------------cc--H-HHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 222222333111 11 2 4677777777776 778888899999888887766
Q ss_pred HHHhhh
Q 000565 194 FRDELH 199 (1418)
Q Consensus 194 l~~~L~ 199 (1418)
++++-.
T Consensus 149 ~rp~~~ 154 (165)
T PF08167_consen 149 FRPFAN 154 (165)
T ss_pred ccchHH
Confidence 666554
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.34 E-value=2.2 Score=50.04 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhhhHHH--HHhhhHHHHHHH-hCCCChHHHHHHHHHHHHHHHHhChh---HHHHHHhhhhhhcCChHH
Q 000565 61 ALQSLASAAVLSGEHFKL--HFNALVPAVVER-LGDAKQPVRDAARRLLLTLMEVSSPT---IIVERAGSYAWTHRSWRV 134 (1418)
Q Consensus 61 al~~l~~l~~~l~~~~~~--~~~~ilp~Llek-lgD~k~~Vr~~a~~~L~~l~e~~~p~---~v~e~ll~~~~~~KnprV 134 (1418)
+|.++..+.+.....+.+ .+..++..|+-. +......||+.+.+||-.++=. +.+ ..+.-++. .++.....|
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~-~~~~~~~~v 80 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQ-ALQKDDEEV 80 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH-HHHhCCHHH
Confidence 455666666665433443 334666655533 5556668999999999888743 222 12223333 455568899
Q ss_pred HHHHHHHHHHHHhhcCCCcchhh---------hhhHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 000565 135 REEFARTVTSAIGLFSATELTLQ---------RAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1418)
Q Consensus 135 r~~~l~~l~~~l~~fg~~~l~l~---------k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~ 189 (1418)
+..+++.+..++-.||...++.. ..++..+.+.|.+.+++||..|.+.++.|+-.
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999997654321 35788889999999999999999999998643
No 155
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.12 E-value=6.5 Score=40.63 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=74.5
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh
Q 000565 282 LIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL 361 (1418)
Q Consensus 282 l~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg 361 (1418)
+++.+++.......+.||..-++-.+.|+. .. .. -++.+.+|.++++..|..|+..|+.+|..+.+.+|
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~----~~-~~------~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRS----KD-VQ------PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhC----CC-CC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC
Confidence 445567776665578899877766666642 21 11 25678889999999999999999999999999999
Q ss_pred hhHHHHH--HHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhC
Q 000565 362 GDFEACA--EMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNC 401 (1418)
Q Consensus 362 ~~f~~~~--~~llp~Ll~~~~~-~~~vi~~sa~~al~~i~~~~ 401 (1418)
..|...+ ..|+..|.+.+.+ ....|++.+...|..|....
T Consensus 74 ~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 74 THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 9996532 2466666666543 23345555555555555444
No 156
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.11 E-value=1.3 Score=42.09 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=70.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+.++..|.|+.--.|..|+..|.+++.... ....++..++..+...++|...=|-..|+.++..++... =.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-------p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-------PD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-------hH
Confidence 467888999999999999999999999754 234557788888889999999999999999999998653 23
Q ss_pred hhHHHHHHHhCCCC
Q 000565 82 ALVPAVVERLGDAK 95 (1418)
Q Consensus 82 ~ilp~LleklgD~k 95 (1418)
.++|.|++...|.+
T Consensus 77 ~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 77 EVLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHHhCcc
Confidence 47888888877754
No 157
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.05 E-value=2.1 Score=45.30 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHHhc------------------CCcHHHHHHHHHHHHHHHhhcCh----hhHHHhhhhhccccchhhHH
Q 000565 1267 DSVEIVIEKLLHVTK------------------DAVPKVSNEAEHCLTVVLSQYDP----FRCLSVIVPLLVTEDEKTLV 1324 (1418)
Q Consensus 1267 ~~~e~~l~~ll~~~~------------------d~~~~V~~aA~~al~~i~~~~~p----~~~l~~l~~~l~s~~~~~~~ 1324 (1418)
+.+..++|.|+.-.. |.+-++|.+|=+|+-++...+.. ..++..+..++.+ ..-+++
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 455666777765332 77889999999999999876433 3567777777765 778999
Q ss_pred HHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHhhh
Q 000565 1325 TCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN------------QSADVRKTVVFCLVDIYIMLGK 1381 (1418)
Q Consensus 1325 ~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d------------~~seVRkaAv~~lv~~~~~lg~ 1381 (1418)
.|.-|+.+++ .+.++.+.+.|..+++.+.+-+.- ...|.-+++..|+.++..++++
T Consensus 84 L~~~~l~kl~-~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 84 LCHLMLSKLA-QLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp HHHHHHHHHH-HS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred HHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999998 566688888899999999888731 1346778889998888777754
No 158
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=4.4 Score=55.44 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=133.9
Q ss_pred CCCCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcc
Q 000565 1183 AGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK 1262 (1418)
Q Consensus 1183 ~~~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~ 1262 (1418)
.+..+..+++.|+..+ ...+..||++|.+++.....+.....+...+..+.+.+-|.+..||+....++..++...+
T Consensus 39 ~dsel~~I~kkL~KkD---~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRD---ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred cCHHHHHHHHHHhccC---hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3445788899887653 5689999999999988876654332244555667778888999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh-----------HHHhhhhhcc---------------
Q 000565 1263 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-----------CLSVIVPLLV--------------- 1316 (1418)
Q Consensus 1263 ~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~-----------~l~~l~~~l~--------------- 1316 (1418)
-++.+|+..+++-.+-..-|..-.|..+|-...+..- +|++ +..++..++.
T Consensus 116 k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f---~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~ 192 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF---AEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS 192 (1312)
T ss_pred HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhc---ChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence 9999999999999999999998888888877775432 2331 2222222221
Q ss_pred ----ccchhhHHHHHHHHHHHHhhcCHHH-HH---hhhh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 000565 1317 ----TEDEKTLVTCINCLTKLVGRLSQEE-LM---AQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1381 (1418)
Q Consensus 1317 ----s~~~~~~~~alk~l~~lv~~~~~~~-l~---~~L~--~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~ 1381 (1418)
++..+....++.++.+++...+.++ +. .-+. .--..+-+-..+..+.+|-+...++..+...+..
T Consensus 193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 1122456678888888886555333 32 1111 1123445556788999999999997766654443
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=90.63 E-value=8.3 Score=54.95 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCC---CcchHHHHH-HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000565 298 DWSVRIAAMQRVEGLVLGGAA---DHPCFRGLL-KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIP 373 (1418)
Q Consensus 298 dW~~R~~AL~~L~~ll~~~~~---~~~~f~~~L-~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp 373 (1418)
.++-++=+|+.|..++..+.. .++.|+..+ .+|+..|.+........|...+|.++-.|...++..|...++.|++
T Consensus 373 ~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~ 452 (1780)
T PLN03076 373 LMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFP 452 (1780)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999986652 356677766 4467788777777888999999999999999999999999999988
Q ss_pred HHHHHhccch----HHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCC-CHHHHHHHHHHHHHHHHhCCCCccccccHH
Q 000565 374 VLFKLVVITV----LVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDR-NAVLRARCCEYALLVLEHWPDAPEIQRSAD 448 (1418)
Q Consensus 374 ~Ll~~~~~~~----~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~K-n~~vR~~~~e~L~~il~~~~~~~~l~~~~~ 448 (1418)
.++-.+-+.+ .-.+ ..+|..+.+-|.-+.++-.|.-+.--+- .+++=....++|.++.+..+.. ....
T Consensus 453 ~I~l~ile~~~~~s~~qK---~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~--~~~~-- 525 (1780)
T PLN03076 453 MIVLRVLENVAQPNFQQK---MIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPG--VETT-- 525 (1780)
T ss_pred HHHHHHhhcCCCCCHHHH---HHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCc--cccc--
Confidence 8655543321 2233 3455555566666666655543332222 2444444445555444322111 1000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHH
Q 000565 449 LYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR 485 (1418)
Q Consensus 449 ~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~ 485 (1418)
+. .-.+...|..|-+|+..+.+..-+-..
T Consensus 526 -~~-------~~qe~~lk~~aLecLv~il~sl~~w~~ 554 (1780)
T PLN03076 526 -LL-------PPQEAAMKLEAMKCLVAILRSMGDWMN 554 (1780)
T ss_pred -cC-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012446788888888887776555443
No 160
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.62 E-value=2.9 Score=41.46 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=69.3
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 2 EEALELARAK-DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 2 e~~l~~l~s~-~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
|..++...+. .|..-...+.+|..++... ......+++.|.+.+++.|+.++..||.+|..++++.|+.|..++
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-----~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET-----NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-----CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3455555543 3555556677777777532 233567888898899999999999999999999999988777654
Q ss_pred hh--hHHHHHH----H-hC-CCChHHHHHHHHHHHHH
Q 000565 81 NA--LVPAVVE----R-LG-DAKQPVRDAARRLLLTL 109 (1418)
Q Consensus 81 ~~--ilp~Lle----k-lg-D~k~~Vr~~a~~~L~~l 109 (1418)
.. ++--++. + .| +....||+.+.+++..+
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 77 ASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 32 2222321 1 22 34567888888777654
No 161
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.58 E-value=7 Score=40.27 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Q 000565 281 ELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL 360 (1418)
Q Consensus 281 dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~l 360 (1418)
.+...+++.......+.||..-++- -.++.... . . -++.+..|.+.++..+..|+..|+.++..+.+..
T Consensus 5 ~~~~li~kATs~~~~~~Dw~~~l~i----cD~i~~~~-~--~----~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 5 SITELIEKATSESLPSPDWSLILEI----CDLINSSP-D--G----AKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHHHHHT-TTSSS--HHHHHHH----HHHHHTST-T--H----HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhCcCCCCCCHHHHHHH----HHHHHcCC-c--c----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3445577777766677899665544 44444331 1 1 3678888999999999999999999999999999
Q ss_pred hhhHHHHH--HHHHHHHHHHhccchH-H---HHHHHHHHHHHHHHhCCc
Q 000565 361 LGDFEACA--EMFIPVLFKLVVITVL-V---IAESSDNCIKTMLRNCKA 403 (1418)
Q Consensus 361 g~~f~~~~--~~llp~Ll~~~~~~~~-v---i~~sa~~al~~i~~~~~~ 403 (1418)
|..|...+ ..|+..|.+++..+.. . |++-+...|..|....+.
T Consensus 74 g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 74 GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence 99996543 3477777776654432 1 677777777777766644
No 162
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.45 E-value=19 Score=46.81 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHHhhcChh-------hHHHhh
Q 000565 1243 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQYDPF-------RCLSVI 1311 (1418)
Q Consensus 1243 ~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~----~~V~~aA~~al~~i~~~~~p~-------~~l~~l 1311 (1418)
++.|...+..++.++++ ......++.+.+||.++..++-+. .....-|.+.+.++++..+|+ .+++.+
T Consensus 586 DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaV 664 (1005)
T KOG2274|consen 586 DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAV 664 (1005)
T ss_pred CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHh
Confidence 55888889999999988 456778899999999999887554 667788888999999999887 244444
Q ss_pred hhhc-cccchhhHHHHHHHHHHHHhhcCHHHHHh-------hhhhhHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHhhhc
Q 000565 1312 VPLL-VTEDEKTLVTCINCLTKLVGRLSQEELMA-------QLPSFLPALFEAFGNQSADVRKTV-VFCLVDIYIMLGKA 1382 (1418)
Q Consensus 1312 ~~~l-~s~~~~~~~~alk~l~~lv~~~~~~~l~~-------~L~~l~p~l~~~~~d~~seVRkaA-v~~lv~~~~~lg~~ 1382 (1418)
..+. -+++..+...+-+||..++ ..+++++.. .|-.+|-++.+.++-..++---+= =.-++.+..++|.+
T Consensus 665 ak~tlHsdD~~tlQ~~~EcLra~I-s~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e 743 (1005)
T KOG2274|consen 665 AKITLHSDDHETLQNATECLRALI-SVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE 743 (1005)
T ss_pred HhheeecCChHHHHhHHHHHHHHH-hcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH
Confidence 3333 3678888999999999998 566666633 134788888877776555543332 23456778888888
Q ss_pred cccccc
Q 000565 1383 FLPYLE 1388 (1418)
Q Consensus 1383 ~~p~l~ 1388 (1418)
+-|.+.
T Consensus 744 l~~n~d 749 (1005)
T KOG2274|consen 744 LGPNLD 749 (1005)
T ss_pred hchhHH
Confidence 877664
No 163
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=15 Score=43.19 Aligned_cols=177 Identities=13% Similarity=0.127 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH-hhhHHHHH
Q 000565 10 AKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF-NALVPAVV 88 (1418)
Q Consensus 10 s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~-~~ilp~Ll 88 (1418)
+.+-.+|..+++.|..+++..++..+-..++-+... ...+++++..+...|..+|+.++.+.+..-...+ ...+..|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~l-l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPL-LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHH-HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 467889999999999999986654322223333333 3488999999999999999999977544222111 12566666
Q ss_pred HHh-CCCChHHHHHHHHHHHHHHHHhChhH-H------HHHHhhhhhhc--CChHHHHHHHHHHHHHHhhcCCCcchhhh
Q 000565 89 ERL-GDAKQPVRDAARRLLLTLMEVSSPTI-I------VERAGSYAWTH--RSWRVREEFARTVTSAIGLFSATELTLQR 158 (1418)
Q Consensus 89 ekl-gD~k~~Vr~~a~~~L~~l~e~~~p~~-v------~e~ll~~~~~~--KnprVr~~~l~~l~~~l~~fg~~~l~l~k 158 (1418)
..| .|....+|.+|.-++..++....|-. - +..|. ..+.. .+.+.+.-++..+..+++.-....-....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~-~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLR-DVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHH-HHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 665 56667789999999999988644421 1 11122 24444 56777777777777776643222111101
Q ss_pred hhHH-HHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 159 AILP-PILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 159 ~ll~-~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
..++ .+..+...-+-++++.|...+..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 1222 33334444455677777776666543
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.34 E-value=82 Score=42.53 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=75.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHH-hC-hh----------HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCc
Q 000565 86 AVVERLGDAKQPVRDAARRLLLTLMEV-SS-PT----------IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE 153 (1418)
Q Consensus 86 ~LleklgD~k~~Vr~~a~~~L~~l~e~-~~-p~----------~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~ 153 (1418)
.+++.|+...-..|.+..+++..+... .. ++ ..++.+.. -+-+-++-||..++..+..+.+......
T Consensus 316 ~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~e-rl~Dvsa~vRskVLqv~~~l~~~~s~p~ 394 (1251)
T KOG0414|consen 316 LLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRE-RLLDVSAYVRSKVLQVFRRLFQQHSIPL 394 (1251)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHHHHHHccCCCc
Confidence 455556666667888888888877643 11 11 13333433 5668899999999999998877654433
Q ss_pred chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 154 l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
-.. ..++..++..|+|.+.-||..|++.+..+....+
T Consensus 395 ~~~-~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 395 GSR-TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred cHH-HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 333 4788889999999999999999999998876654
No 165
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=5.4 Score=47.27 Aligned_cols=110 Identities=25% Similarity=0.266 Sum_probs=91.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh-----
Q 000565 42 LVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT----- 116 (1418)
Q Consensus 42 lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~----- 116 (1418)
.++.+..-++..|.+|...|+.-|..+...-...+..+...+++.+.+.+.|....||+...+++..++....+.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 344555667899999999999999999887677788899999999999999999999999999999987754333
Q ss_pred --HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCC
Q 000565 117 --IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1418)
Q Consensus 117 --~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~ 152 (1418)
.++.++.. ++.|-.|-+|+..+.++.-+++.|++.
T Consensus 139 ~~l~~~yi~~-AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 139 VSLLMPYISS-AMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHH-HHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 24455554 899999999999999999999988764
No 166
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.65 E-value=8.6 Score=44.67 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=100.7
Q ss_pred hCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc----cccc--HHHHHHHHHHHhc--------CC
Q 000565 1218 ANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----MEDS--VEIVIEKLLHVTK--------DA 1283 (1418)
Q Consensus 1218 ~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~----~~~~--~e~~l~~ll~~~~--------d~ 1283 (1418)
.-....+.+|+..++..++..++|-+..++..++.+|..++...+.. +..+ .+.+-..+..++- +.
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 34455566799999999999999999999999999999999976533 3333 5555555555554 56
Q ss_pred cHHHHHHHHHHHHHHHhhc--Ch-----hhHHHhhhh-hcc----ccc---hhhHHHHHHHHHHHHhhcCHHHHHhhhhh
Q 000565 1284 VPKVSNEAEHCLTVVLSQY--DP-----FRCLSVIVP-LLV----TED---EKTLVTCINCLTKLVGRLSQEELMAQLPS 1348 (1418)
Q Consensus 1284 ~~~V~~aA~~al~~i~~~~--~p-----~~~l~~l~~-~l~----s~~---~~~~~~alk~l~~lv~~~~~~~l~~~L~~ 1348 (1418)
...+..+|-.|+..++... ++ ...-+++.. +|. ..+ .+....-++-+..++..+|.. .-.||..
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~r 265 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQR 265 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 6778888999998887642 11 123344433 222 223 334455568899999999954 4579999
Q ss_pred hHHHHHHHhcCCC
Q 000565 1349 FLPALFEAFGNQS 1361 (1418)
Q Consensus 1349 l~p~l~~~~~d~~ 1361 (1418)
++|.+.+-+.|..
T Consensus 266 ii~~l~~~l~npf 278 (282)
T PF10521_consen 266 IIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHhcCCC
Confidence 9999998887764
No 167
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=89.39 E-value=3.7 Score=41.01 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=70.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHH---
Q 000565 9 RAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVP--- 85 (1418)
Q Consensus 9 ~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp--- 85 (1418)
.+.+|-.=-.-+++|.++... +...+..+++.|.+.|+++++.|..++|.+|..++..-...|..++..-..
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 345677777778888777653 245678999999999999999999999999999998866777766554333
Q ss_pred HHHHHhC--------CCChHHHHHHHHHHHHHHH
Q 000565 86 AVVERLG--------DAKQPVRDAARRLLLTLME 111 (1418)
Q Consensus 86 ~Lleklg--------D~k~~Vr~~a~~~L~~l~e 111 (1418)
.+.+.-| +....||+.|.+++..+..
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 3333333 2344588888888877653
No 168
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.38 E-value=1.6 Score=47.35 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhh
Q 000565 1271 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPS 1348 (1418)
Q Consensus 1271 ~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~--~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~ 1348 (1418)
..++.+++.+-++...|+.+|-+.+..++.. +||..|+++|.-+.++.+..++-.|.+++..+.++++ .-+.. .
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~-s~v~~---~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE-SLVES---R 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH-HHHHH---H
Confidence 4678899999999999999999999999966 9999999999998888888889999999999998887 45543 3
Q ss_pred hHHHHHHHhc
Q 000565 1349 FLPALFEAFG 1358 (1418)
Q Consensus 1349 l~p~l~~~~~ 1358 (1418)
++.++..+|+
T Consensus 84 ~~~gi~~af~ 93 (187)
T PF12830_consen 84 YSEGIRLAFD 93 (187)
T ss_pred HHHHHHHHHH
Confidence 4456666654
No 169
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.92 E-value=1.4 Score=41.90 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=59.5
Q ss_pred hhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 000565 1313 PLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLP 1385 (1418)
Q Consensus 1313 ~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p 1385 (1418)
..|.+...|++..++-+|.++++.-. .-...++.++..+...+.|.|+-|=-+|++|++++....++++.|
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 34456678899999999999998877 222356888999999999999999999999999999888886654
No 170
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.86 E-value=21 Score=45.49 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=82.2
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc-----ccchhhHHHHHHHHHHHHhhcCH
Q 000565 1265 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQ 1339 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~-----s~~~~~~~~alk~l~~lv~~~~~ 1339 (1418)
-+++.+-+||-|+.++.|....+++.+-..+.++++.++...+-+.|.|-|. +.+...++-|+-|+..+++++..
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999998776666666664 45667889999999999988876
Q ss_pred HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000565 1340 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1373 (1418)
Q Consensus 1340 ~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv 1373 (1418)
-.+. +.++.+.+++.-.++++--..+..+-
T Consensus 463 ~~v~----d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 463 AAVL----DELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred HHhH----HHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5543 33357788888888887655544433
No 171
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.62 E-value=9 Score=39.11 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
+++.......+.||..-++-.+.|+ ... .. -++.+.+|.++++..|..|+..|+.++..+.+..|..|.
T Consensus 5 i~kATs~~l~~~dw~~~l~icD~i~----~~~-~~------~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~ 73 (133)
T smart00288 5 IDKATSPSLLEEDWELILEICDLIN----STP-DG------PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFH 73 (133)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHh----CCC-cc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4555555556899977666655553 221 11 256778899999999999999999999999999999996
Q ss_pred HHH--HHHHHHHHHHhccch--HHHHHHHHHHHHHHHHhCC
Q 000565 366 ACA--EMFIPVLFKLVVITV--LVIAESSDNCIKTMLRNCK 402 (1418)
Q Consensus 366 ~~~--~~llp~Ll~~~~~~~--~vi~~sa~~al~~i~~~~~ 402 (1418)
..+ ..|+..|.+.+.... ..|++.+...+..|.....
T Consensus 74 ~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 74 LEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 543 247777776665542 2266666666666665553
No 172
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.43 E-value=17 Score=44.69 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhc----cccHHHHHHHHHHHHH
Q 000565 280 KELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS----DRRSSIVKQACHLLCF 355 (1418)
Q Consensus 280 ~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~----D~rs~V~~~A~~~l~~ 355 (1418)
+|++-.+++|...+.. .|-..|.+||+.|+. +. .+.+.+..++.-+..++. -.|-.+....++.+..
T Consensus 203 ~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~T-------Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rS 273 (576)
T KOG2549|consen 203 VELQLYYKEITEACTG-SDEPLRQEALQSLET-------DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRS 273 (576)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHhhcc-------Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHH
Confidence 4555667888877654 778899999998862 11 111223333333333322 1233333333444444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHhhhC-C
Q 000565 356 LSKELLGDFEACAEMFIPVLFKLVVIT----------VLVIAESSDNCIKTMLRNCKA------VRVLPRIADCAKND-R 418 (1418)
Q Consensus 356 La~~lg~~f~~~~~~llp~Ll~~~~~~----------~~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l~~~-K 418 (1418)
|...=--.+++|+..+||.++..+..+ .-.+|+-|...+..|+.+.+. .||+..+.+.+.+. +
T Consensus 274 Ll~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 274 LLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK 353 (576)
T ss_pred HhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 433322357899999999998876543 344788888888888887653 57777777777544 3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHchh
Q 000565 419 NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE---VRSTARMCYRMFAKTWPE 482 (1418)
Q Consensus 419 n~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~e---VR~~Ar~a~~~l~~~~p~ 482 (1418)
.......+...|..+-...-.. .+-..+..+...|..-+.+.+.+ ....|.+++..|.++...
T Consensus 354 ~~st~YGai~gL~~lg~~~I~~-~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 354 PLSTHYGAIAGLSELGHEVIRT-VILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred CchhhhhHHHHHHHhhhhhhhh-eeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 3444444433333322211100 11122344444555544444333 377888888888777544
No 173
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=88.38 E-value=4.3 Score=52.83 Aligned_cols=146 Identities=16% Similarity=0.269 Sum_probs=103.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh--hhHHHhh
Q 000565 1234 AVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVI 1311 (1418)
Q Consensus 1234 ~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p--~~~l~~l 1311 (1418)
-|+..|...+..+.+.+-.++.+++..-...| ++..+++.|-.. ....++..++..=.| ..++..|
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~y~~~t------~s~~~~~il~~~~~P~~K~~~~~l 75 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVDYYLST------NSQRALEILVGVQEPHDKHLFDKL 75 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHHHHhhc------CcHHHHHHHHhcCCccHHHHHHHH
Confidence 45566666777788878888888877544443 577777776543 234556666666677 6799999
Q ss_pred hhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 000565 1312 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1389 (1418)
Q Consensus 1312 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L-~~l~p~l~~~~~-d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~ 1389 (1418)
...+... ..|+.+|.+|..+|...++ -+...+ ..+++.|.+|+. |++.-|=-+|+.||+.+-=++...+.|||+.
T Consensus 76 ~~~~~~~--~~Rl~~L~Ll~~~v~~qp~-~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 76 NDYFVKP--SYRLQALTLLGHFVRSQPP-WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHcCc--hhHHHHHHHHHHHHhcCCc-hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 9988754 4589999999999976664 333333 367788888876 8999999999999887776666666777764
Q ss_pred cChHH
Q 000565 1390 LNSTQ 1394 (1418)
Q Consensus 1390 L~~s~ 1394 (1418)
|=...
T Consensus 153 Lf~If 157 (668)
T PF04388_consen 153 LFNIF 157 (668)
T ss_pred HHHHH
Confidence 43333
No 174
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=1.9 Score=49.60 Aligned_cols=145 Identities=18% Similarity=0.269 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc--ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh---
Q 000565 1232 LTAVLEVLDDADSSVREVALSLINEMLKNQKDV--MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--- 1306 (1418)
Q Consensus 1232 l~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~--~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~--- 1306 (1418)
+..|...++..+..++..|...+..|.-...++ +.+.-.-++++|++++.|+..+|.-.|.-|++.++..+.+.+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 346778888889999999998888875543332 223333489999999999999999999999999998876653
Q ss_pred ---HHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Q 000565 1307 ---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD-VRKTVVFCLVDIYI 1377 (1418)
Q Consensus 1307 ---~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~se-VRkaAv~~lv~~~~ 1377 (1418)
-++.+..+|++.-.|..++.+-|+..+.-+=.-+.+-. =..++-.|++-+.-.+.| +.-+|+.+++.+-.
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 56677777777666666655555544332222121110 023344577777777777 88899999887765
No 175
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.70 E-value=2.6 Score=50.18 Aligned_cols=135 Identities=15% Similarity=0.275 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHhhCC----hhhHHHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHHHh----------c-c
Q 000565 1203 TSKHGALQQLIKASVAND----HSIWTKYFNQI-----LTAVLEVLDDADSSVREVALSLINEMLKN----------Q-K 1262 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~----~~~~~~~f~~l-----l~~ll~~l~d~~~~vr~~aL~~L~~l~~~----------~-~ 1262 (1418)
+.|..||.-+...++.-. +-+|.-.|.+- ...++-.|+|.+...|..||.++..|+.- . +
T Consensus 11 kvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~ 90 (728)
T KOG4535|consen 11 KVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSD 90 (728)
T ss_pred HHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 467777776666554432 22343222111 11244567899999999999999998642 1 3
Q ss_pred ccccccHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHhhcChhh--------HHHhhhhhccccchhhHHHH
Q 000565 1263 DVMEDSVEIVIEKLLHVTK--------DAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVTC 1326 (1418)
Q Consensus 1263 ~~~~~~~e~~l~~ll~~~~--------d~~~~V~~aA~~al~~i~~~~~p~~--------~l~~l~~~l~s~~~~~~~~a 1326 (1418)
+.|.+|.-.+-..+++++. .....+.+....|+..++...|..+ +..-+.|.|++++.++++.+
T Consensus 91 ~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~ 170 (728)
T KOG4535|consen 91 HAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSS 170 (728)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Confidence 4688997777666666554 6667899999999999999988764 55666788999999999999
Q ss_pred HHHHHHHHhhc
Q 000565 1327 INCLTKLVGRL 1337 (1418)
Q Consensus 1327 lk~l~~lv~~~ 1337 (1418)
+-+|+.++...
T Consensus 171 l~~~~~~v~t~ 181 (728)
T KOG4535|consen 171 LTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHhcC
Confidence 99988887554
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=8.8 Score=50.99 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHh-CCCChHHHHHHHHHHHHHHHHhCh--hHHHHHHhhhhhhc
Q 000565 53 NNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL-GDAKQPVRDAARRLLLTLMEVSSP--TIIVERAGSYAWTH 129 (1418)
Q Consensus 53 sN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llekl-gD~k~~Vr~~a~~~L~~l~e~~~p--~~v~e~ll~~~~~~ 129 (1418)
+|+.++.+|.-+++.++--..++...+ +|.++.-+ +.+.+.||-.+.-+|-.+.=.++- +..-+.+.. -+.+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~-rL~D 1009 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYR-RLRD 1009 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHH-HhcC
Confidence 467788888888888875544444444 45544444 355666888887777777643211 223344554 5778
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc
Q 000565 130 RSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 130 KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
-++-||..++..+..++-. .-+.+ |-.++....||.|++++||+.|...+.+|-..-
T Consensus 1010 ~~~~vRkta~lvlshLILn---dmiKV-KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILN---DMIKV-KGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHh---hhhHh-cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 9999999999988877642 22334 778899999999999999999999998887654
No 177
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=2.1 Score=51.87 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred hCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCC
Q 000565 91 LGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLND 170 (1418)
Q Consensus 91 lgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D 170 (1418)
..|.++-||.+|.-+|--+|= -.++.++ ..++...++-|+.||.++.-.|.-+...-|. +..+..+-.++.|
T Consensus 561 vsD~nDDVrRAAViAlGfvc~-~D~~~lv-~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D 632 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCC-DDRDLLV-GTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYD 632 (926)
T ss_pred cccCchHHHHHHHHheeeeEe-cCcchhh-HHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhC
Confidence 578999999998877766552 1233332 2233345688999999998888765543343 4667778889999
Q ss_pred CChhHHHHHHHHHHHHHHhcChhH
Q 000565 171 PNPGVREAAILCIEEMYTYAGPQF 194 (1418)
Q Consensus 171 ~~~~VR~aA~~~L~~l~~~~G~~l 194 (1418)
++.-||..|+-+++.|.-...+.+
T Consensus 633 ~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 633 TNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred cHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999999999988876655543
No 178
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=87.25 E-value=7.4 Score=46.01 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=121.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhc-ccChHhHH---HHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-hh-hHH
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRK-SLTSAEVT---SLVDCCLDLLKDNNFKVSQGALQSLASAAVLS-GE-HFK 77 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~-~~~~~~~~---~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l-~~-~~~ 77 (1418)
+.++...+-|..|..++..+...|...+. .+-....+ .=+..+...+.|-...+.++.++.|..++..+ .+ .|.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 34566678999999999999888865442 11111222 22333445677878888899999888887664 22 232
Q ss_pred H-----HHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHH---HhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc
Q 000565 78 L-----HFNALVPAVVERLGDAKQPVRDAARRLLLTLME---VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 78 ~-----~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e---~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f 149 (1418)
. ++..-++.++-.-||....++..|.+.+..|+- ....+.|-+.|....-.+|.|.+-..-...|.+++...
T Consensus 478 kledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdl 557 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDL 557 (666)
T ss_pred hhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhc
Confidence 2 344456677777789888888888887766653 23344455555543334677887777777788888776
Q ss_pred CCCc--chhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 150 SATE--LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 150 g~~~--l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
|... +.. .....+-+..+++.-.++|++|+..++.+|+.--
T Consensus 558 gkGragfie-diakkfgVpaeehglndkreaafaiicdmtrdhQ 600 (666)
T KOG4825|consen 558 GKGRAGFIE-DIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQ 600 (666)
T ss_pred CCCccchhH-HHHHHhCCCccccchhHHHHhHhhhhhhhcccHH
Confidence 6543 221 1222333556678888999999999999997543
No 179
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=87.21 E-value=16 Score=37.72 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=70.9
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHhhhh
Q 000565 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 285 ~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
.+++.......+.||..-++--+.|+. . ... -++.+.+|.+++. ..|.+|+..|+.+|..+.+..|..
T Consensus 5 ~IekATse~l~~~dw~~ileicD~In~----~-~~~------~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~ 73 (141)
T cd03565 5 LIEKATDGSLQSEDWGLNMEICDIINE----T-EDG------PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR 73 (141)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhC----C-CCc------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH
Confidence 356666666677899877776666642 1 111 2567788888897 468889999999999999999999
Q ss_pred HHHHH--HHHHHH-HHHHhccc---hHHHHHHHHHHHHHHHHhC
Q 000565 364 FEACA--EMFIPV-LFKLVVIT---VLVIAESSDNCIKTMLRNC 401 (1418)
Q Consensus 364 f~~~~--~~llp~-Ll~~~~~~---~~vi~~sa~~al~~i~~~~ 401 (1418)
|...+ ..|+.. |.+.+..+ ...|++-....|..|....
T Consensus 74 fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 74 FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 97543 357776 66665422 2244555555555555443
No 180
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.15 E-value=1.9 Score=42.15 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=62.8
Q ss_pred cchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-cccccccccChH
Q 000565 1318 EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNST 1393 (1418)
Q Consensus 1318 ~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s 1393 (1418)
+....+..+++.|+.+++ ...+.+...+|.++-.|..+++.. ++|..|..|.-.+-..+++ ++.|+++..-..
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 456789999999999998 777889999999999999888777 9999999999999999995 899988765443
No 181
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=2.8 Score=52.60 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=88.5
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhh
Q 000565 48 DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAW 127 (1418)
Q Consensus 48 ~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~ 127 (1418)
..+.|.++-.+..++-.+...- .|..-...+..+++.- ..|.++-||.+|.-+|--++= -.|+.+.. ++....
T Consensus 526 el~~dkdpilR~~Gm~t~alAy--~GTgnnkair~lLh~a---VsD~nDDVrRaAVialGFVl~-~dp~~~~s-~V~lLs 598 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAY--VGTGNNKAIRRLLHVA---VSDVNDDVRRAAVIALGFVLF-RDPEQLPS-TVSLLS 598 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHH--hccCchhhHHHhhccc---ccccchHHHHHHHHHheeeEe-cChhhchH-HHHHHh
Confidence 4567777777777766554332 2333334445555543 478999999999888766552 23443222 222245
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcCh
Q 000565 128 THRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP 192 (1418)
Q Consensus 128 ~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~ 192 (1418)
.+-||.||.++.-.|.-+..--|. +..+..+-.+..|++.=||..|+-.++-|.-...+
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 688999999998888755443332 57788888889999999999999999888765543
No 182
>PF05536 Neurochondrin: Neurochondrin
Probab=86.99 E-value=20 Score=45.58 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=121.1
Q ss_pred CCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHH--HHHHHHHHHHH-HhcC------CC-hHHHHHHHHHH
Q 000565 1185 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLE-VLDD------AD-SSVREVALSLI 1254 (1418)
Q Consensus 1185 ~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~--~f~~ll~~ll~-~l~d------~~-~~vr~~aL~~L 1254 (1418)
+.+.+.++.|...+| ++|-.||.-+.+++..+....-.+ .|+.+=.-+++ .|.. .+ ..-+..|+.+|
T Consensus 5 ~~l~~c~~lL~~~~D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSADD---TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCCc---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 457888888887764 799999999999998776433221 34333333333 3322 12 33677899999
Q ss_pred HHHHHhccccccccHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHhhcChh-------hHHHhhhhhccccchhhHHHH
Q 000565 1255 NEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTC 1326 (1418)
Q Consensus 1255 ~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~-~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~s~~~~~~~~a 1326 (1418)
...|..-.-.-++-+...+|.|++.+..+.. .+...|-+|+..|+.+ +.- ..++.|+.++.+. ....-.|
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~-~~~~E~A 159 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ-SFQMEIA 159 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC-cchHHHH
Confidence 9999843333456678889999999977766 9999999999999933 221 2566677777653 2334566
Q ss_pred HHHHHHHHhhcCHHHHHh---hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000565 1327 INCLTKLVGRLSQEELMA---QLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1327 lk~l~~lv~~~~~~~l~~---~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~ 1375 (1418)
++++..++...+.+.... .+..+++.|.+.|.....+-+=..-..|..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 777777776666444332 4556777788777765555554444443333
No 183
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=86.81 E-value=7.2 Score=42.65 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCccchHHHHHHHhh-hCCCHH
Q 000565 343 SSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAK-NDRNAV 421 (1418)
Q Consensus 343 s~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~-~~Kn~~ 421 (1418)
.....+.+.+++.+++.+|....+++..++..|-+.-.+.....++.+..|+.+.++++|+..++..+--.+. .++...
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 3467789999999999999998888888888888888877777899999999999999999887766543332 122222
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH
Q 000565 422 LRARCCEYALLVLEHWPDAPEIQRSADLYEDLIR 455 (1418)
Q Consensus 422 vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~ 455 (1418)
-| .||.=+++..-....+.-+.+.+.+.+.
T Consensus 94 ~r----aWLLPlLr~~i~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 94 GR----AWLLPLLRDHIRNASLSFFVEEFLPLAR 123 (198)
T ss_pred cc----chhHHHHHHhccCCChHHHHHHHHHHHH
Confidence 23 4666566554222234434444444433
No 184
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.46 E-value=7.5 Score=47.70 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=95.9
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcc--------cchHHHHHHHHHHHHHHHHh
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKD--------NNFKVSQGALQSLASAAVLS 72 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~D--------sN~~V~~~al~~l~~l~~~l 72 (1418)
|.++.+.|.+.+-..|.+|++.|..- ..++.|+..+..++.+ .|.......+..+..|+++-
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TD----------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETD----------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC----------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence 35677788889999999999988421 2344555544433332 45555555566666665553
Q ss_pred hhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCC
Q 000565 73 GEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1418)
Q Consensus 73 ~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~ 152 (1418)
.-++.+|+..++|.++..+-..+- .+ .-..|..|-+|--....+..++..|+..
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l-----------------~~---------~p~~dnhwaLRDfAA~ll~~i~k~f~~~ 332 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNL-----------------CL---------RPELDNHWALRDFAARLLAQICKNFSTL 332 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhc-----------------cC---------CccccchHHHHHHHHHHHHHHHHhhhhH
Confidence 346789999999999876544331 00 1145667888888888888888888876
Q ss_pred cchhhhhhHHHHHHhcCCCCh--hHHHHHHHHHHHH
Q 000565 153 ELTLQRAILPPILQMLNDPNP--GVREAAILCIEEM 186 (1418)
Q Consensus 153 ~l~l~k~ll~~l~~lL~D~~~--~VR~aA~~~L~~l 186 (1418)
...++.-++..+.+.|.|... .....|+..|.+|
T Consensus 333 y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 333 YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 555545677778887777643 3344444444443
No 185
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=86.44 E-value=6.1 Score=47.22 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhccc-------chHHHHHHHHHHHHHHHHhhh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDN-------NFKVSQGALQSLASAAVLSGE 74 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~Ds-------N~~V~~~al~~l~~l~~~l~~ 74 (1418)
+.+.+.|.+.+-..|..|++.|..- +.++.++..+..++.+. |..+....+.++.+++.+-.=
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD----------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTD----------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccC----------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 3455666677778888888877421 12333333333332221 677777778888888766445
Q ss_pred hHHHHHhhhHHHHHHHh-----CC-----CChHHHHHHHHHHHHHHHHhCh
Q 000565 75 HFKLHFNALVPAVVERL-----GD-----AKQPVRDAARRLLLTLMEVSSP 115 (1418)
Q Consensus 75 ~~~~~~~~ilp~Llekl-----gD-----~k~~Vr~~a~~~L~~l~e~~~p 115 (1418)
.+..|+..++|.++..+ +. ..-.+|+.|..+|..+++.++.
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~ 301 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST 301 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 67899999999988765 22 2235899999999999987543
No 186
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=4.7 Score=50.35 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=110.3
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC----C
Q 000565 332 GPLSTQLSDRRSSIVKQACHLLCFLSKELLGD-----FEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC----K 402 (1418)
Q Consensus 332 ~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~-----f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~----~ 402 (1418)
+.|-..++-.|+.|...|..++-.+...-+++ ++..++.=+-.|.+++.+--..||..|...+..++... +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44557788899999999999999888766654 45556666667888888888889988887776655432 2
Q ss_pred ---ccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 403 ---AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 403 ---~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
...++..|++.+..+-...||..+++.|..++..=... ..++.+.+++...+.|....||.++...+..+..+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh----~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH----PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch----hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 24677788887766777899999999999887652222 23567778888899999999999999988877765
No 187
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=86.09 E-value=17 Score=46.27 Aligned_cols=178 Identities=15% Similarity=0.110 Sum_probs=109.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNAL 83 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~i 83 (1418)
|++-|..+|-.++-.=++.|.+++...+.. .-...++..+...+ .|.+++-..+-++..|.+.. .-.-|...+
T Consensus 278 fLD~l~~kdn~qKs~Flk~Ls~~ip~fp~r---v~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~--s~~~~~~~~ 350 (700)
T KOG2137|consen 278 FLDDLPQKDNSQKSSFLKGLSKLIPTFPAR---VLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGL--SQNEFGPKM 350 (700)
T ss_pred hcccccccCcHHHHHHHHHHHHhhccCCHH---HHHHhhhhHHHHHh--ccccccccccchhhhhhhcc--chhhhhhhh
Confidence 445555567777777777777666554322 12344444443333 34455555556666665443 222344556
Q ss_pred HHHHHHHhC--CCChHHHHHHHHHHHHHHHHhChhHHHHHHhh---hhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhh
Q 000565 84 VPAVVERLG--DAKQPVRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLFSATELTLQR 158 (1418)
Q Consensus 84 lp~Lleklg--D~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~---~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k 158 (1418)
+|.|..-+. +.++ +.-...+=+..+.+...++++.+.+++ .++++-...+.+.++..+..+.+......+ -+
T Consensus 351 ~p~l~pi~~~~~~~~-~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~ 427 (700)
T KOG2137|consen 351 LPALKPIYSASDPKQ-ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQ 427 (700)
T ss_pred hHHHHHHhccCCccc-chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HH
Confidence 666655443 4442 333444444445566677777777664 467788889999999998887776442222 14
Q ss_pred hhHHHHHH-hcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 159 AILPPILQ-MLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 159 ~ll~~l~~-lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
.++|.+.. ++...+..|+..+.-|++.+...+.
T Consensus 428 ~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 428 AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 68888866 5688999999999999999985544
No 188
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.05 E-value=1.2e+02 Score=42.21 Aligned_cols=312 Identities=15% Similarity=0.106 Sum_probs=155.3
Q ss_pred hhcCChHHHHHHHHHHHHHHhhcC---CCcchhhhhhHH---HHHH--hcCCCChhHHHHHHHHHHHHHHhcChhHHHhh
Q 000565 127 WTHRSWRVREEFARTVTSAIGLFS---ATELTLQRAILP---PILQ--MLNDPNPGVREAAILCIEEMYTYAGPQFRDEL 198 (1418)
Q Consensus 127 ~~~KnprVr~~~l~~l~~~l~~fg---~~~l~l~k~ll~---~l~~--lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L 198 (1418)
..+-++-...+.++.|-.+.+.+. ..+..+ ..+.| .+++ +|.|++.+||---.-|+.+|++..-+..
T Consensus 11 ~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~~-~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea---- 85 (1266)
T KOG1525|consen 11 LTSLNPISKDELLKRLKKLANCLASLDQDNLDL-ASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA---- 85 (1266)
T ss_pred ccccCcccHHHHHHHHHHHHHHHhhcccCchhH-HHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC----
Confidence 344455555555555554444332 222333 34444 3432 6789999999999999999999876531
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCCCccccC
Q 000565 199 HRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYS 278 (1418)
Q Consensus 199 ~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~i~i~s 278 (1418)
-....++++|+..|-+...+. . |.....|..--.- .......+. +--..+.+
T Consensus 86 ---Py~~~~lkdIf~~~~~q~~gL-~-d~~sp~f~r~~~l------letl~~~k~-----------------~l~~~l~d 137 (1266)
T KOG1525|consen 86 ---PYTDEQLKDIFQLILSQFSGL-G-DVESPYFKRYFYL------LETLAKVKF-----------------CLLMLLED 137 (1266)
T ss_pred ---CCcHHHHHHHHHHHHHHHhhc-c-CCCCcchhhHHHH------HHHHHHhHH-----------------Hheeeccc
Confidence 112235555555444321110 0 1000111110000 000000000 00011224
Q ss_pred hHHHHHHHHHhhhhcC-C--CCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q 000565 279 EKELIREFEKIGSTLV-P--DKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCF 355 (1418)
Q Consensus 279 ~~dl~~~l~~i~~~l~-~--~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~ 355 (1418)
..|+..++-.+.-.+. . ...|.. .+..+..++.....-... .|.-|+.-|. ..+.....+|+.+-..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~v~~e---~L~~ll~~lv----~~~~~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEEDTVQSE---LLDVLLENLV----KPGRDTIKEADKLASD 207 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhhccchHH---HHHHHHHHhc----cCCCCccHHHHHHHHH
Confidence 4555555544444433 1 245555 333333444221111111 1233333332 2334444556666666
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--ccchHHHHHHHhhhCCCHHHHHHHHHHHHHH
Q 000565 356 LSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK--AVRVLPRIADCAKNDRNAVLRARCCEYALLV 433 (1418)
Q Consensus 356 La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~--~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~i 433 (1418)
+...+....++....++...+-.-......+...-..-|..+..... ...++|+|.--+. .-+-.+|..+..+++.+
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~-se~~~~Rl~a~~lvg~~ 286 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELL-SEQEEVRLKAVKLVGRM 286 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 66666655555555544433322222222233344444444433332 2578899988885 45889999999999999
Q ss_pred HHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHH
Q 000565 434 LEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERS 484 (1418)
Q Consensus 434 l~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a 484 (1418)
+..-... .-+.+ +.+..+....+.|.+.+||-.+-++-.-....-|..+
T Consensus 287 ~~~~~~~-l~~~~-~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 287 FSDKDSQ-LSETY-DDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred Hhcchhh-hcccc-hHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 9875432 11223 4455566677899999999998887665444444433
No 189
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.45 E-value=19 Score=36.69 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHH
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~ 365 (1418)
+++.......+.||..-++-.+.|+ ... .. -++.+.+|.+.++..|..|+..|+.++..+.+..|..|.
T Consensus 5 I~kATs~~~~~~D~~~il~icd~I~----~~~--~~-----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~ 73 (133)
T cd03561 5 IERATSPSLEEPDWALNLELCDLIN----LKP--NG-----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFH 73 (133)
T ss_pred HHHHcCcccCCccHHHHHHHHHHHh----CCC--CC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 4555555556789976666555554 221 11 356788899999999999999999999999999999886
Q ss_pred HH-HH-HHHHHHHHHhccc---hHHHHHHHHHHHHHHHHhCC
Q 000565 366 AC-AE-MFIPVLFKLVVIT---VLVIAESSDNCIKTMLRNCK 402 (1418)
Q Consensus 366 ~~-~~-~llp~Ll~~~~~~---~~vi~~sa~~al~~i~~~~~ 402 (1418)
.. +. .++..|.+.+..+ ..-|++-+...+..|....+
T Consensus 74 ~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 74 LQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 53 33 4666666666542 33455555555555555443
No 190
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.37 E-value=8.4 Score=44.74 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=106.6
Q ss_pred CCCHHHHHHHH-HHHHHHHH-hhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh-h---HHH--HHh
Q 000565 10 AKDTKERMAGV-ERLHQLLE-ASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE-H---FKL--HFN 81 (1418)
Q Consensus 10 s~~Wk~R~~al-e~L~~~l~-~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~-~---~~~--~~~ 81 (1418)
.+.||..-... -.+.=++. ......-...+.-++..+...+.|....+...|+.++..++.+... . ++. ...
T Consensus 86 ~~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 86 RQPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred cCCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 34688776322 33333343 2221111233455666667789999999999999999999987643 3 444 245
Q ss_pred hhHHHHHHHhC--------CCChHHHHHHHHHHHHHHHHh----------ChhHHH-HHHhhhhhhc----CChHHHHHH
Q 000565 82 ALVPAVVERLG--------DAKQPVRDAARRLLLTLMEVS----------SPTIIV-ERAGSYAWTH----RSWRVREEF 138 (1418)
Q Consensus 82 ~ilp~Lleklg--------D~k~~Vr~~a~~~L~~l~e~~----------~p~~v~-e~ll~~~~~~----KnprVr~~~ 138 (1418)
.+-+.|...|- +....+-..+..||..++... ....++ +.++. ++.| ++++++...
T Consensus 166 v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~-~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILS-SMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhh-hceeccccCchhHHHHH
Confidence 55556665665 666667888999999997642 111222 33554 2332 358999999
Q ss_pred HHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCC
Q 000565 139 ARTVTSAIGLFSATELTLQRAILPPILQMLNDPN 172 (1418)
Q Consensus 139 l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~ 172 (1418)
++.+..+++..|.......+.+++.+...++++.
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999988654323788999998888875
No 191
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=85.02 E-value=4.6 Score=42.94 Aligned_cols=88 Identities=14% Similarity=0.314 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCCchH------HHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHH
Q 000565 803 SDWCARVSAFNYLRSLLQQGPKGIQ------EVIQNF-EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME 875 (1418)
Q Consensus 803 ~~W~~R~~gl~~L~~~l~~~~~~~~------~v~~~l-~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~ 875 (1418)
.++..|.=||+-|..+|+.+...+. ....-+ +.+|..+.+-+..+++.|+..+|.++..++..++..++..+.
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999988654322 122222 478888988888888999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCch
Q 000565 876 RILPHVFSRLIDPKE 890 (1418)
Q Consensus 876 ~ll~~l~~klgD~k~ 890 (1418)
.+++.++.++-+.+.
T Consensus 114 ~~l~~i~~~il~~~~ 128 (168)
T PF12783_consen 114 VFLSHIILRILESDN 128 (168)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999998754443
No 192
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=84.73 E-value=13 Score=39.51 Aligned_cols=109 Identities=18% Similarity=0.319 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccCh-H---hH-----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 000565 12 DTKERMAGVERLHQLLEASRKSLTS-A---EV-----TSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1418)
Q Consensus 12 ~Wk~R~~ale~L~~~l~~~~~~~~~-~---~~-----~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ 82 (1418)
+.+.|.-|++-|..+++..+..... + .+ ..++..+.+.+...++.+...++.++..+....+..++..+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999987644321 1 22 2344555566666679999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHhChhHHHHHH
Q 000565 83 LVPAVVERLGDAKQ---PVRDAARRLLLTLMEVSSPTIIVERA 122 (1418)
Q Consensus 83 ilp~LleklgD~k~---~Vr~~a~~~L~~l~e~~~p~~v~e~l 122 (1418)
+++.++.++-+++. .-|+.+.+++..+++ .|+.+++-.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~--~p~~l~~lf 155 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK--DPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh--ChhHHHHHH
Confidence 99999997644332 457778888888875 466655543
No 193
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=84.58 E-value=18 Score=39.64 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhh
Q 000565 1235 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL 1314 (1418)
Q Consensus 1235 ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~ 1314 (1418)
+...|+=+-...-..+|.++..|....+.+..+++..+|..+-+...+..-..+.+++.|+.+.+.+++|+.++.++.=.
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 33444334445666799999999999999999999999999999999988899999999999999999999999888644
Q ss_pred cc
Q 000565 1315 LV 1316 (1418)
Q Consensus 1315 l~ 1316 (1418)
+.
T Consensus 85 l~ 86 (198)
T PF08161_consen 85 LD 86 (198)
T ss_pred cc
Confidence 43
No 194
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=84.09 E-value=1.1 Score=35.73 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000565 1329 CLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1371 (1418)
Q Consensus 1329 ~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~ 1371 (1418)
+|..++ ...+..+. .+.++..+.+.+.|.++.||++|+..
T Consensus 2 ~l~~iv-~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIV-EKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHH-hcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 344555 23333332 35888999999999999999999875
No 195
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.94 E-value=3.7 Score=56.10 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=96.2
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 1266 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~ 1266 (1418)
+++|.++|...+ -+.|..|..-+..++........ +.+..+...++..+.|....||-.++......+-+.+...+
T Consensus 261 ip~l~~eL~se~---~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 261 IPQLEFELLSEQ---EEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHhcch---HHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 578888887665 36999999877777766654443 56788888999999999999999999999888877555554
Q ss_pred ccHHHHHHHHHHHhcCCcHHHHHHH----HHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhh
Q 000565 1267 DSVEIVIEKLLHVTKDAVPKVSNEA----EHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1336 (1418)
Q Consensus 1267 ~~~e~~l~~ll~~~~d~~~~V~~aA----~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~ 1336 (1418)
...+.+ .+-+..-|...-|++.+ ....+... .+-|. +++.+..-+.++.|.+|..|+.-|+++-++
T Consensus 337 ~~~~~~--~l~~~~~D~~~rir~~v~i~~~~v~~~~l-~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILL--ALRERDLDEDVRVRTQVVIVACDVMKFKL-VYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHH--HHHhhcCChhhhheeeEEEEEeehhHhhh-hhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 444322 22223334333332211 11222222 33444 888888888889999999999888888875
No 196
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.89 E-value=8.4 Score=47.48 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcCh--------hhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC-
Q 000565 1289 NEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN- 1359 (1418)
Q Consensus 1289 ~aA~~al~~i~~~~~p--------~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d- 1359 (1418)
-+....+.+++...+. ..++.+...+|.++.. -..++++|..+++.++.+.++++++.|+-.+.+.+..
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555566665554333 2466666677766653 3668999999999999999999999999999988875
Q ss_pred -CCHHHHHHHHH
Q 000565 1360 -QSADVRKTVVF 1370 (1418)
Q Consensus 1360 -~~seVRkaAv~ 1370 (1418)
+..-||.-.+|
T Consensus 255 kT~kf~~~fv~F 266 (435)
T PF03378_consen 255 KTEKFVKRFVVF 266 (435)
T ss_dssp --HHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 34445566665
No 197
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.69 E-value=4.2 Score=40.36 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=39.5
Q ss_pred hHHHhhhhhcc-ccchhhHHHHHHHHHHHHhhcC--HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1306 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1306 ~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~~--~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
.+++.|..+|. +.+..+...|+.=|+.++..++ +..+... ..-+.|.+.|.|.+++||+.|..|+=.+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL--GAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH--SHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc--ChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35555555553 2233344445555666665553 2222211 13356778889999999999999976654
No 198
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.59 E-value=22 Score=45.90 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=97.1
Q ss_pred CHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhc
Q 000565 1186 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ 1261 (1418)
Q Consensus 1186 ~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d----~~~~vr~~aL~~L~~l~~~~ 1261 (1418)
.+.-+.+++....- +..+..+++..+...+...... ++..+++++.+ ++..++..|+..+..|++..
T Consensus 358 a~~~i~~~i~~~~~-~~~ea~~~~~~~~~~~~~Pt~~--------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 358 ALKFIKQWIKNKKI-TPLEAAQLLAVLPHTARYPTEE--------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhhcCCHH--------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 35556666665543 2345666665555555444433 33466666654 24458898988888887642
Q ss_pred c---cccccc-HHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc-cc--chhhHHHHHHHH
Q 000565 1262 K---DVMEDS-VEIVIEKLLHVT----KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-TE--DEKTLVTCINCL 1330 (1418)
Q Consensus 1262 ~---~~~~~~-~e~~l~~ll~~~----~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~-s~--~~~~~~~alk~l 1330 (1418)
- ....++ ++.+++.+.+.+ .+..... ...++++|. .+.-+..+.++.|++. .. ....++.|+..|
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~LkaLG-N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE---IQLYLKALG-NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh---eeeHHHhhh-ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 1 111111 233444444333 2222222 234455544 3455677778888886 22 234788999999
Q ss_pred HHHHhhcCHHHHHhhhhhhHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000565 1331 TKLVGRLSQEELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1331 ~~lv~~~~~~~l~~~L~~l~p~l~~~~~--d~~seVRkaAv~~lv~~ 1375 (1418)
.++++.++...- +.+..-|. +.++|||-+|+..|+..
T Consensus 505 r~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 505 RNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHhCchHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 999877774332 33333333 47899999999987644
No 199
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=83.46 E-value=23 Score=42.38 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 000565 279 EKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLL-KQLVGPLSTQLSDRRSSIVKQACHLLCFLS 357 (1418)
Q Consensus 279 ~~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L-~~L~~~L~~~l~D~rs~V~~~A~~~l~~La 357 (1418)
.+|+...+++|...+.+ .+-..|.+||+.|+. . .....+++.+ .-+...+...+.+ |..+....+.++..|.
T Consensus 173 S~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~t----D-~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl 245 (343)
T cd08050 173 SKELQLYFEEITEALVG-SNEEKRREALQSLRT----D-PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALL 245 (343)
T ss_pred CHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhcc----C-CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHh
Confidence 36677788888887754 567789999988762 1 1111222211 1222333333333 6666777777777776
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHHhCCc
Q 000565 358 KELLGDFEACAEMFIPVLFKLVVI----------TVLVIAESSDNCIKTMLRNCKA 403 (1418)
Q Consensus 358 ~~lg~~f~~~~~~llp~Ll~~~~~----------~~~vi~~sa~~al~~i~~~~~~ 403 (1418)
..-.-..++|+..++|.++..+-. ..--+|+-|...|..|++..+.
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~ 301 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST 301 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 655556899999999998876632 2345788888888888877653
No 200
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.34 E-value=1.8e+02 Score=44.19 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=110.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHh-------HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-------VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE 74 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-------~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~ 74 (1418)
+.+++.+.+.+-..+..|...+.-++......+..++ +..|+.-+....-|+-+....+++..|..+.+.+..
T Consensus 987 dal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~ 1066 (3550)
T KOG0889|consen 987 DALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPS 1066 (3550)
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchH
Confidence 5677888899999999999999998877543322111 344455555667788899999998888888877653
Q ss_pred -hHHHHHhhhHHHHHHHhCCCChHHHH----HHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhc
Q 000565 75 -HFKLHFNALVPAVVERLGDAKQPVRD----AARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 75 -~~~~~~~~ilp~LleklgD~k~~Vr~----~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~f 149 (1418)
.+......++.+++..+.|.-..+.. .+..+|..++..+-- .+. ..-.+.+
T Consensus 1067 ~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~-----~~~-------------------~~~~~~~ 1122 (3550)
T KOG0889|consen 1067 LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFI-----DEL-------------------AEEERAK 1122 (3550)
T ss_pred HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHH-----Hhh-------------------hhHHHHH
Confidence 34456667888888888776544433 444444444443211 000 0000000
Q ss_pred CCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhh
Q 000565 150 SATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1418)
Q Consensus 150 g~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~ 199 (1418)
.. -.++..++.-|-|+|..||+.++++|-.+....|..+.+.+.
T Consensus 1123 -----~~-~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~ 1166 (3550)
T KOG0889|consen 1123 -----SA-MNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLE 1166 (3550)
T ss_pred -----HH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 01 245566677788999999999999999999999877666554
No 201
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=22 Score=45.46 Aligned_cols=172 Identities=20% Similarity=0.201 Sum_probs=93.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcccCh--Hh----------------------------HHHHHHHH---HHhhcccc
Q 000565 8 ARAKDTKERMAGVERLHQLLEASRKSLTS--AE----------------------------VTSLVDCC---LDLLKDNN 54 (1418)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~--~~----------------------------~~~lv~~l---~~~l~DsN 54 (1418)
|.+.+--.|.+|+..|.++....+....+ .+ +..++..+ ..-+.|.+
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF 370 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF 370 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc
Confidence 34566778888888888877654322110 11 12222222 12345555
Q ss_pred hHHHHHHHHHHHHHHHHh------------hh----hHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChhHH
Q 000565 55 FKVSQGALQSLASAAVLS------------GE----HFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTII 118 (1418)
Q Consensus 55 ~~V~~~al~~l~~l~~~l------------~~----~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~~v 118 (1418)
-.|+..|+..++....+. .+ .++++.-.++-.+++-.-|. ++.+.+-|..++|-+.-..+
T Consensus 371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDce~~~i 446 (865)
T KOG1078|consen 371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDCEFTQI 446 (865)
T ss_pred eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhccchHH
Confidence 556666666666543321 11 23333333333333333333 46677777777775544333
Q ss_pred HHHHh----hhhhhcCCh----------------HHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHH
Q 000565 119 VERAG----SYAWTHRSW----------------RVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREA 178 (1418)
Q Consensus 119 ~e~ll----~~~~~~Knp----------------rVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~a 178 (1418)
.-+++ ..|-+.++| .||.+.+.++ ..||...-.+...+.-.+..|+.|++.+||+.
T Consensus 447 ~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~al----aKfg~~~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 447 AVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSAL----AKFGAQDVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred HHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHH----HHHhcCCCCccccHHHHHHHHhcCchHHHHHH
Confidence 33332 234444444 4555555554 45775443332455566778999999999999
Q ss_pred HHHHHHHHH
Q 000565 179 AILCIEEMY 187 (1418)
Q Consensus 179 A~~~L~~l~ 187 (1418)
|.-.+..+-
T Consensus 523 Atf~l~~l~ 531 (865)
T KOG1078|consen 523 ATFYLKNLE 531 (865)
T ss_pred HHHHHHHhh
Confidence 998888775
No 202
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.18 E-value=16 Score=42.92 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=71.4
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh
Q 000565 284 REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD 363 (1418)
Q Consensus 284 ~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~ 363 (1418)
..+.++...-.+..||..-++.-.++.. +.+. =++-+..|.+++....-.|+..|+.++..++..+|+.
T Consensus 11 ~~v~KAT~e~nT~enW~~IlDvCD~v~~-------~~~~----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 11 QDVEKATDEKNTSENWSLILDVCDKVGS-------DPDG----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred HHHHHhcCcccccccHHHHHHHHHhhcC-------CCcc----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH
Confidence 4466777666778999988887776642 1111 2445556668888888899999999999999999999
Q ss_pred HHHH--HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhC
Q 000565 364 FEAC--AEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNC 401 (1418)
Q Consensus 364 f~~~--~~~llp~Ll~~~~~~-~~vi~~sa~~al~~i~~~~ 401 (1418)
|... -+.|...|..++.++ ..-+++.....+..|.+.+
T Consensus 80 ~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 8653 334666565555532 2235555555555555543
No 203
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.03 E-value=37 Score=41.03 Aligned_cols=170 Identities=14% Similarity=0.053 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000565 297 KDWSVRIAAMQRVEGLVLGG--AADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPV 374 (1418)
Q Consensus 297 ~dW~~R~~AL~~L~~ll~~~--~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~ 374 (1418)
++-.+|.+||+-++.++.-. ..+.+ ..++.++.....+....+..-++.++.+|+-.-- +.-. ...-+..
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~------~~vvralvaiae~~~D~lr~~cletL~El~l~~P-~lv~-~~gG~~~ 151 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIP------RGVVRALVAIAEHEDDRLRRICLETLCELALLNP-ELVA-ECGGIRV 151 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCC------HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH-HHHH-HcCCHHH
Confidence 45678999999999999742 22222 3456666666666777888888899998876532 2111 1123456
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHhhhC------CCH--HHHHHHHHHHHHHHHhCCCC
Q 000565 375 LFKLVVITVLVIAESSDNCIKTMLRNCKA------VRVLPRIADCAKND------RNA--VLRARCCEYALLVLEHWPDA 440 (1418)
Q Consensus 375 Ll~~~~~~~~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l~~~------Kn~--~vR~~~~e~L~~il~~~~~~ 440 (1418)
|++.+.+...-+.++...++-.++.+-.. ..-+..++....+. .+. ..-..+...+..+++.|+.-
T Consensus 152 L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL 231 (371)
T PF14664_consen 152 LLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL 231 (371)
T ss_pred HHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce
Confidence 66666665444777777777777765432 12233333333111 122 23344667788899999863
Q ss_pred ccccccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 000565 441 PEIQRSADLYEDLIRCCVADAMSEVRSTARMCYR 474 (1418)
Q Consensus 441 ~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~ 474 (1418)
-.+...--.-.+.+...+.-+++++|+.--..|-
T Consensus 232 l~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 232 LYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred eeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2111111022334455667788898888766554
No 204
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.74 E-value=7.2 Score=47.96 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH--hhh
Q 000565 6 ELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF--NAL 83 (1418)
Q Consensus 6 ~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~--~~i 83 (1418)
+.+...||-.-++-.+.|... . ....+.+.+|++.|+..|.+|+..||.+|..+++++|..|-..+ ..+
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~----~-----~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINST----E-----GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHHhcC----c-----cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345678998777655544321 1 12237888999999999999999999999999999999876543 345
Q ss_pred HHHHHHHhCCC--ChHHHHHHHHHHHHHHH
Q 000565 84 VPAVVERLGDA--KQPVRDAARRLLLTLME 111 (1418)
Q Consensus 84 lp~LleklgD~--k~~Vr~~a~~~L~~l~e 111 (1418)
++-++.+.... ...||+++...|..+.+
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 55555444332 22355555544444443
No 205
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.45 E-value=11 Score=39.72 Aligned_cols=143 Identities=12% Similarity=0.193 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHH-Hh-CCCChHHHHHHHHHHHH------
Q 000565 38 EVTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVE-RL-GDAKQPVRDAARRLLLT------ 108 (1418)
Q Consensus 38 ~~~~lv~~l~~~l~-DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Lle-kl-gD~k~~Vr~~a~~~L~~------ 108 (1418)
++..|++.|.+.++ +.++.+...++.+||.+= .+.+|....+..-.+ .- .+... ........
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLDSKSSENSND----ESTDISLPMMGISP 77 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCCccccccccc----cchhhHHhhccCCC
Confidence 45677777777665 457999999999999872 112221111100000 00 01111 11111111
Q ss_pred HHHHhChhHHHHHHhhhhhhcCCh-HHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 109 LMEVSSPTIIVERAGSYAWTHRSW-RVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 109 l~e~~~p~~v~e~ll~~~~~~Knp-rVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
-.+-.-|..++..|+. .+++++= .-+..++..+..+++..|.+..++.+.++|.++..+...++..|+.-..-|+.+.
T Consensus 78 ~~ee~y~~vvi~~L~~-iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 78 SSEEYYPTVVINALMR-ILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred chHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1222334456666665 4554432 3334567777777777888877766899999999999888899999888888887
Q ss_pred Hhc
Q 000565 188 TYA 190 (1418)
Q Consensus 188 ~~~ 190 (1418)
..+
T Consensus 157 ~iv 159 (160)
T PF11865_consen 157 SIV 159 (160)
T ss_pred HHh
Confidence 654
No 206
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.14 E-value=13 Score=36.41 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhcC---C-ChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000565 1224 WTKYFNQILTAVLEVLDD---A-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1299 (1418)
Q Consensus 1224 ~~~~f~~ll~~ll~~l~d---~-~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~ 1299 (1418)
..+||=.++..+-+.+.| + ....+..++..+.+|.+-.+..+..+..-++-.|-.++..+ +++..|-+|-..++
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHH
Confidence 345666677777777766 3 44488899999999998434444444444444444444443 88888888888888
Q ss_pred hhcChhhHHHhhhhh
Q 000565 1300 SQYDPFRCLSVIVPL 1314 (1418)
Q Consensus 1300 ~~~~p~~~l~~l~~~ 1314 (1418)
..++++.+-+++...
T Consensus 83 ~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 83 KTLDEEDLGPLLDQI 97 (107)
T ss_pred HHCCHHHHHHHHHHH
Confidence 888887766555443
No 207
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.34 E-value=19 Score=43.11 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHh---
Q 000565 1229 NQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVT----KDAVPKVSNEAEHCLTVVLS--- 1300 (1418)
Q Consensus 1229 ~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~-~~~~~~~e~~l~~ll~~~----~d~~~~V~~aA~~al~~i~~--- 1300 (1418)
+.+...+..-++|++..+|..-+..+.+++...+ .....+++.+++.+++.+ .++........-.|+-.++.
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~ 139 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSS 139 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcc
Confidence 5556678888899988899988888888887222 235667777888887766 45543322111122221111
Q ss_pred ----------------hcChhhHHHhhhhhcccc--chhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC--
Q 000565 1301 ----------------QYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ-- 1360 (1418)
Q Consensus 1301 ----------------~~~p~~~l~~l~~~l~s~--~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~-- 1360 (1418)
...|..-+ ++.+-+-++ ......-+++.+..++..+...........+--+++-.+-++
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~ 218 (339)
T PF12074_consen 140 WKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV 218 (339)
T ss_pred ccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC
Confidence 11111100 011111011 122344455666666655543222111123334566666777
Q ss_pred CHHHHHHHHHHHHHHHHHhhh
Q 000565 1361 SADVRKTVVFCLVDIYIMLGK 1381 (1418)
Q Consensus 1361 ~seVRkaAv~~lv~~~~~lg~ 1381 (1418)
..+||+.|..++-.+|..-++
T Consensus 219 ~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 219 SWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred CHHHHHHHHHHHHHHHHhChH
Confidence 899999999999998875543
No 208
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.21 E-value=14 Score=36.14 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000565 1224 WTKYFNQILTAVLEVLDDAD---S-SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1299 (1418)
Q Consensus 1224 ~~~~f~~ll~~ll~~l~d~~---~-~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~ 1299 (1418)
+.+||=.++..+-+.+.|.+ + ..+..+++.+.+|.+..+..+..+..-+.-.|..++.. ++.+..|-+|-..++
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHH
Confidence 44677777788888887754 3 36889999999999855544444443333344444443 579999999999999
Q ss_pred hhcChhhHHHhhhhhc
Q 000565 1300 SQYDPFRCLSVIVPLL 1315 (1418)
Q Consensus 1300 ~~~~p~~~l~~l~~~l 1315 (1418)
..++++.+-+++...+
T Consensus 83 ~~L~~~~l~~ll~~~~ 98 (107)
T smart00802 83 KTLKEEELGPLLDQIF 98 (107)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 9988877665554433
No 209
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.07 E-value=20 Score=44.23 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=81.4
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhH
Q 000565 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1418)
Q Consensus 285 ~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f 364 (1418)
.+++.......+.||..-++--+.| ..... . -++.+.+|++++...++.|+..|+.+|..+.+.+|..|
T Consensus 5 ~IdkAT~~~l~~pDWa~NleIcD~I----N~~~~-~------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f 73 (470)
T KOG1087|consen 5 LIDKATSESLAEPDWALNLEICDLI----NSTEG-G------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF 73 (470)
T ss_pred HHHHhhcccccCccHHHHHHHHHHH----hcCcc-C------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH
Confidence 3556665555689997666544433 22111 1 24788999999999999999999999999999999999
Q ss_pred HHH-HH-HHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhCCc
Q 000565 365 EAC-AE-MFIPVLFKLVVIT--VLVIAESSDNCIKTMLRNCKA 403 (1418)
Q Consensus 365 ~~~-~~-~llp~Ll~~~~~~--~~vi~~sa~~al~~i~~~~~~ 403 (1418)
... ++ .|+..+++.+++. -..|++-+...|++|-+..+-
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 743 33 5999988888776 345899999999999887654
No 210
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.47 E-value=26 Score=44.00 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=80.8
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHhhh------hHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHh-----Chh
Q 000565 48 DLLKDNNFKVSQGALQSLASAAVLSGE------HFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS-----SPT 116 (1418)
Q Consensus 48 ~~l~DsN~~V~~~al~~l~~l~~~l~~------~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~-----~p~ 116 (1418)
.++....+......++++..++....+ ..+..+..++..|.+||.|..+-+|.+|.+.+..++..- .-+
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ 385 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRH 385 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHH
Confidence 466778888899999999998866532 344567888999999999999999999999999998741 124
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC
Q 000565 117 IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 117 ~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
++.+-+.. .+.+++..||..++..+..++-.+++
T Consensus 386 ev~~lv~r-~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 386 EVIRLVGR-RLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHH-HhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 55555554 78899999999999988887776544
No 211
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.32 E-value=2.3e+02 Score=37.76 Aligned_cols=75 Identities=16% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC
Q 000565 40 TSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS 114 (1418)
Q Consensus 40 ~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~ 114 (1418)
...+..+....+..|+.|..+-.+....+..++...++.+..-++-.++....|.++.+++...+.+.-+++...
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~ 351 (1014)
T KOG4524|consen 277 NIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLH 351 (1014)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 334444444557889999999999888888887777777777778888877788999999999999999998643
No 212
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.00 E-value=25 Score=45.85 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=89.7
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhc-
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ- 1261 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d----~~~~vr~~aL~~L~~l~~~~- 1261 (1418)
+.-+.+.+....- +..+....+..|...++.-. ..++..++++++. .+..++..|+..+..|+...
T Consensus 397 v~~i~~~I~~~~~-~~~ea~~~l~~l~~~~~~Pt--------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 397 VKFIKDLIKSKKL-TDDEAAQLLASLPFHVRRPT--------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHTT-S--HHHHHHHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 4556666665432 23344444444433332222 3344455555543 34558888988888875542
Q ss_pred -------------cccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcccc---chhhHHH
Q 000565 1262 -------------KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE---DEKTLVT 1325 (1418)
Q Consensus 1262 -------------~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~---~~~~~~~ 1325 (1418)
....+.|+..+...+-++........+..+..||..+ .-+..++++.|++..+ ....++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----CCchhhHHHHhHhhhccccchHHHHH
Confidence 1123445555555554444444444444454444433 3457899999999765 3347889
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000565 1326 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1326 alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~ 1375 (1418)
|+..|.++...++ +.+. +.++|.... ...++|||-||+..|+..
T Consensus 544 Ai~Alr~~~~~~~-~~v~---~~l~~I~~n--~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 544 AIQALRRLAKHCP-EKVR---EILLPIFMN--TTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHTTTTGGGT-H-HHHH---HHHHHHHH---TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCc-HHHH---HHHHHHhcC--CCCChhHHHHHHHHHHhc
Confidence 9998888876665 3322 222333332 235789999999886643
No 213
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=78.97 E-value=19 Score=36.79 Aligned_cols=137 Identities=16% Similarity=0.330 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHH
Q 000565 1208 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKV 1287 (1418)
Q Consensus 1208 al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V 1287 (1418)
...-+..++....+..|...|..+ +..+.. +....+.+|.+|..+.+.... |. ..+-...-
T Consensus 8 l~~~l~~i~~~~~P~~Wp~~l~~l----~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~----------~~~~~~~r 68 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPDFLEDL----LQLLQS-SPQHLELVLRILRILPEEITD----FR----------RSSLSQER 68 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTTHHHHH----HHHHHT-THHHHHHHHHHHHHHHHHHHT----SH----------CCHSHHHH
T ss_pred HHHHHHHHHHHHChhhCchHHHHH----HHHhcc-chhHHHHHHHHHHHHHHHHHh----hh----------chhhhHHH
Confidence 344555666666667777655544 444443 355566677777776653221 00 00001111
Q ss_pred HHHHHHHHHHHHhhcChhhHHHhhhhhccccc----hhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHH
Q 000565 1288 SNEAEHCLTVVLSQYDPFRCLSVIVPLLVTED----EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD 1363 (1418)
Q Consensus 1288 ~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~----~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~se 1363 (1418)
++.-..+++. . -+.++.++..++.... ......+++++...+.-.+.+.+.. ..+++.+++.+. +++
T Consensus 69 ~~~l~~~l~~---~--~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~--~~~ 139 (148)
T PF08389_consen 69 RRELKDALRS---N--SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQ--SPE 139 (148)
T ss_dssp HHHHHHHHHH---H--HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTT--SCC
T ss_pred HHHHHHHHHH---H--HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcC--CHH
Confidence 2222222221 1 3455666666664221 4457788999999998556666654 558999999994 445
Q ss_pred HHHHHHHHH
Q 000565 1364 VRKTVVFCL 1372 (1418)
Q Consensus 1364 VRkaAv~~l 1372 (1418)
.|.+|..|+
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 599999986
No 214
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.75 E-value=3.2 Score=44.69 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---hcc
Q 000565 1307 CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG---KAF 1383 (1418)
Q Consensus 1307 ~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg---~~~ 1383 (1418)
.|+.....|..-++|.+..|-.-++.|+.+.+ +.+.+.||.+|+.|..++...|-||-+.+.+.+.-+-...| .++
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 45555555554466666666766777776666 77778999999999999999999999999999887776544 688
Q ss_pred cccccccC
Q 000565 1384 LPYLERLN 1391 (1418)
Q Consensus 1384 ~p~l~~L~ 1391 (1418)
+||.-+|=
T Consensus 194 VPfYRQlL 201 (262)
T KOG3961|consen 194 VPFYRQLL 201 (262)
T ss_pred hhHHHHhh
Confidence 99876553
No 215
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.51 E-value=9.9 Score=41.27 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHH
Q 000565 119 VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRD 196 (1418)
Q Consensus 119 ~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~ 196 (1418)
+.++++ ..-+.+..||..++..+..+++ .|-.+ . +.++|.++.+..|+++.+|+.|..++.+++...+.-+..
T Consensus 10 l~~Il~-~~~~~~~~vr~~Al~~l~~il~-qGLvn--P-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILE-LCLSSDDSVRLAALQVLELILR-QGLVN--P-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHHHHh-cCCCC--h-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555 5567888999999988877665 45422 3 689999999999999999999999999998776654433
No 216
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.95 E-value=53 Score=41.63 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=89.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHH----HHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhH-HH
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSL----VDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHF-KL 78 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~l----v~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~-~~ 78 (1418)
++..|+-.|...|..|.+-+.+++.-.++.....+.+.+ ...+.+++.|.-+.|...|+.-+..+....=..+ ..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 567788899999999999998887654433322333333 4456788999999998888776665543311111 12
Q ss_pred HHhhhHHHHHHHh-CCCChHHHHHHHHHHHHHHHHhChhHHHHHHhh---hhhhcCChHHHHHHHHHHHHH
Q 000565 79 HFNALVPAVVERL-GDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSA 145 (1418)
Q Consensus 79 ~~~~ilp~Llekl-gD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~---~~~~~KnprVr~~~l~~l~~~ 145 (1418)
.+..++.-+++-+ .|+-..||-...+.|..+..+---..+++.+++ ..+.+++-+||.+....|..+
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 3333444444443 455666888888888877754112345666554 456677788888888777653
No 217
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=77.34 E-value=4 Score=46.75 Aligned_cols=155 Identities=13% Similarity=0.216 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000565 1221 HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1299 (1418)
Q Consensus 1221 ~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e-~~l~~ll~~~~d~~~~V~~aA~~al~~i~ 1299 (1418)
+..|. +..+.+..|...+-..++.+..-|+..+.+|..-.-.+....+. -+...|++++.++...|.+-|...+..|+
T Consensus 235 ~P~w~-~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 235 PPDWS-NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 33454 56666777777776667776667888888876522222222222 25667899999998899888888887777
Q ss_pred hhcChh-------hHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000565 1300 SQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFC 1371 (1418)
Q Consensus 1300 ~~~~p~-------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L-~~l~p~l~~~~~d~~seVRkaAv~~ 1371 (1418)
+-.+.. -.|+.+.++|.+.+..++-.++=.+..+. .-..+++...+ ..++|.|++.+...+=-.||.|-.+
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 654443 26777788887766665655554443332 22334443332 5789999999999999999998877
Q ss_pred HHHHHH
Q 000565 1372 LVDIYI 1377 (1418)
Q Consensus 1372 lv~~~~ 1377 (1418)
+.....
T Consensus 393 isNats 398 (526)
T COG5064 393 ISNATS 398 (526)
T ss_pred HHhhhc
Confidence 765543
No 218
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=77.25 E-value=35 Score=35.76 Aligned_cols=109 Identities=12% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhC------ChhhHHHHHHHHHHHHHH---Hh-cCCCh---HH------H
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN------DHSIWTKYFNQILTAVLE---VL-DDADS---SV------R 1247 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~------~~~~~~~~f~~ll~~ll~---~l-~d~~~---~v------r 1247 (1418)
+.+++..|...+ ..+|.+||++|..++... +.-.|...|..|+..+.. .+ ..++. .. .
T Consensus 6 i~~~~~~L~S~k---~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL 82 (155)
T PF11640_consen 6 INSILRLLSSDK---IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRL 82 (155)
T ss_pred HHHHHHHHhccc---cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 566777887664 479999999999999654 244576667766666442 22 22211 12 2
Q ss_pred HHHHHHHHHHHHhccccccc-cHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHH
Q 000565 1248 EVALSLINEMLKNQKDVMED-SVEIVIEKLLHVTKDAV-PKVSNEAEHCLTVV 1298 (1418)
Q Consensus 1248 ~~aL~~L~~l~~~~~~~~~~-~~e~~l~~ll~~~~d~~-~~V~~aA~~al~~i 1298 (1418)
+.+..+|+.+++.--.++.. .+..++..+++.+.++. .-+.--+..++++|
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 34566677766655566664 37789999999999887 33344444444444
No 219
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=77.09 E-value=53 Score=39.74 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=86.5
Q ss_pred HhcCCChHHHHHHHHHHHHHHHhccc--cccc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cC---hhhHHH
Q 000565 1238 VLDDADSSVREVALSLINEMLKNQKD--VMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YD---PFRCLS 1309 (1418)
Q Consensus 1238 ~l~d~~~~vr~~aL~~L~~l~~~~~~--~~~~-~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~--~~---p~~~l~ 1309 (1418)
.+.|. ..||.+|++++++++..... .+.. .++.++..-|+.-. +...=|++|-..++.++.. -+ |..+++
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~-~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN-KNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC-CChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 44444 88999999999998875421 1222 23344444443322 2234478888888888877 22 556888
Q ss_pred hhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-cccccc
Q 000565 1310 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYL 1387 (1418)
Q Consensus 1310 ~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l 1387 (1418)
.|..+....+.+-+..|++.|..+. -..++.+..+ .=+..|.+++-|...++-. -++..+...+.. .-+.|+
T Consensus 112 alvaiae~~~D~lr~~cletL~El~-l~~P~lv~~~--gG~~~L~~~l~d~~~~~~~---~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELA-LLNPELVAEC--GGIRVLLRALIDGSFSISE---SLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHH-hhCHHHHHHc--CCHHHHHHHHHhccHhHHH---HHHHHHHHHhCCcchhhhh
Confidence 8888887777778999999998888 4454555432 1235666666664445333 344445555553 444444
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.97 E-value=16 Score=48.09 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhCC-------ccchHHHHHHHhhhC-CCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHh
Q 000565 387 AESSDNCIKTMLRNCK-------AVRVLPRIADCAKND-RNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCV 458 (1418)
Q Consensus 387 ~~sa~~al~~i~~~~~-------~~~llp~l~~~l~~~-Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l 458 (1418)
|+-|...|-.|+.+.. ...+|.+.++.+ ++ ..|-.|+=+|-+|+.+-+.+..+. ....-+.--+-+...+
T Consensus 574 rtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~Ar-w~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 574 RTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEAR-WSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchhh-hccccccHHHHHHHHh
Confidence 3334444555555433 246777777777 56 468899999999998888776542 1111122233455678
Q ss_pred cCCChHHHHHHHHHHHHHHHH----chhHHHHH
Q 000565 459 ADAMSEVRSTARMCYRMFAKT----WPERSRRL 487 (1418)
Q Consensus 459 ~Dad~eVR~~Ar~a~~~l~~~----~p~~a~~l 487 (1418)
.|.-+|||.+|.-||++|... |+++....
T Consensus 652 sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~ 684 (1387)
T KOG1517|consen 652 SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVV 684 (1387)
T ss_pred cCccHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 999999999999999999887 67765554
No 221
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=76.57 E-value=1.4e+02 Score=33.87 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=57.3
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhCCccchHH
Q 000565 331 VGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVIT--VLVIAESSDNCIKTMLRNCKAVRVLP 408 (1418)
Q Consensus 331 ~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~--~~vi~~sa~~al~~i~~~~~~~~llp 408 (1418)
+.+|.+.+.+.-.-..-++.-+++.| ....-+|.|.+.+.+. +..+|-.|..||..|. -+..++
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----~e~~~~ 254 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA----DEDCVE 254 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----CHHHHH
Confidence 34555666665333333333344333 1234577788777766 4568888888887654 466777
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 409 RIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 409 ~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
.|.+.+ ++..+.||..|.-.|..+.-.
T Consensus 255 vL~e~~-~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 255 VLKEYL-GDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHHHh
Confidence 888777 677888998887777765443
No 222
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.42 E-value=48 Score=42.64 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=113.4
Q ss_pred CCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHhcc
Q 000565 1185 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-D-ADSSVREVALSLINEMLKNQK 1262 (1418)
Q Consensus 1185 ~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~-d-~~~~vr~~aL~~L~~l~~~~~ 1262 (1418)
+.|..+.+.+....- .++|++|+..|-.+.+.-.-.+.....+ .|+..|. | .|+.+...+|.+|--++.+-.
T Consensus 22 ETI~kLcDRvessTL--~eDRR~A~rgLKa~srkYR~~Vga~Gmk----~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTL--LEDRRDAVRGLKAFSRKYREEVGAQGMK----PLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHcccH----HHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 457777777776654 4899999999988777655444433334 5555553 3 366666677777766665322
Q ss_pred ccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHH
Q 000565 1263 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1342 (1418)
Q Consensus 1263 ~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l 1342 (1418)
+ | +...|+ .++..-++.....++.. +..+..+...+...++-+|+.++++++.++...|++.=
T Consensus 96 --~--------~---~v~dds-~qsdd~g~~iae~fik~---qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q 158 (970)
T KOG0946|consen 96 --S--------P---EVMDDS-TQSDDLGLWIAEQFIKN---QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ 158 (970)
T ss_pred --c--------h---hhcccc-hhhhHHHHHHHHHHHcC---chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence 0 0 122344 35555566555555544 45566667777778999999999999999988875542
Q ss_pred Hh--hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1343 MA--QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1343 ~~--~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
.. ..|.=|-.+..-++|.---+|..|+.-+.++.
T Consensus 159 ~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 21 34776777888888999999999988876654
No 223
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.11 E-value=6.5 Score=48.20 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--hhhhccCCChhhHHHHHHHHHHH
Q 000565 806 CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPFESYMERILPHVFS 883 (1418)
Q Consensus 806 ~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~--~li~~~~~~~~~~l~~ll~~l~~ 883 (1418)
+--.--|..|..+|...+.. +...-...+|..+.+-+..+|++|+..+|..+. .++....+.-+..+..+.|.|..
T Consensus 270 ~Kev~FL~el~~il~~~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 270 QKEVLFLNELEEILEVLPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHHHHHHTT--HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 33344456677788765532 233456789999999999999999999998776 34566556667788888888887
Q ss_pred hh-CCCchhhHHHHHHHHHHHHhcCCchh
Q 000565 884 RL-IDPKELVRQPCSTTLDIVSKTYSVDS 911 (1418)
Q Consensus 884 kl-gD~k~svr~~a~~~L~~~~~~~~~~~ 911 (1418)
.. ++=+..||..+..+|..+++ .+++.
T Consensus 348 ~~~~HWn~~Vr~~a~~vl~~l~~-~d~~l 375 (409)
T PF01603_consen 348 NSKNHWNQTVRNLAQNVLKILME-MDPKL 375 (409)
T ss_dssp TTSS-SSTTHHHHHHHHHHHHHT-TSHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH-hCHHH
Confidence 76 57789999999999999986 34443
No 224
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.10 E-value=32 Score=36.33 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 000565 348 QACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTML 398 (1418)
Q Consensus 348 ~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~ 398 (1418)
.+++++-.+++.+|.+.-+|+..++|.+++.+.......++.-..-|..++
T Consensus 106 ~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 106 AVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455666666666776666777777777777666554445554444444333
No 225
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.03 E-value=24 Score=41.67 Aligned_cols=149 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred CHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhc
Q 000565 1186 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ 1261 (1418)
Q Consensus 1186 ~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d----~~~~vr~~aL~~L~~l~~~~ 1261 (1418)
....++. +.+.+| +--...|+.-|..++..+....-. .-..++..++.++.+ .+..+...|+..|+.|++..
T Consensus 106 ~~~~fl~-ll~~~D--~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 106 PYSPFLK-LLDRND--SFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp -HHHHHH-H-S-SS--HHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred hHHHHHH-HhcCCC--HHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 4567777 444443 567788888888888877644322 113455555555544 34456788999999999877
Q ss_pred cccccccHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhcc-ccchhhHHHHH
Q 000565 1262 KDVMEDSVEIVIEKLLHVT-----KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCI 1327 (1418)
Q Consensus 1262 ~~~~~~~~e~~l~~ll~~~-----~d~~~~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~al 1327 (1418)
..+..-+-.-.++.+++.+ .++.-.++-.=+.++-.|.-.+.++ .+++.|..++. +.+.++.+.|+
T Consensus 182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHH
Confidence 6652211144444444444 3444455555555555665555554 26666666664 45677777888
Q ss_pred HHHHHHHhhcC
Q 000565 1328 NCLTKLVGRLS 1338 (1418)
Q Consensus 1328 k~l~~lv~~~~ 1338 (1418)
-.+..+++.-.
T Consensus 262 a~l~Nl~~~~~ 272 (312)
T PF03224_consen 262 AILRNLLSKAP 272 (312)
T ss_dssp HHHHHTTSSSS
T ss_pred HHHHHHHhccH
Confidence 88888876555
No 226
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.48 E-value=1.3e+02 Score=37.46 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh--------hhhHHHHHhhhHHHHHHHhCCC------------ChHHH
Q 000565 40 TSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS--------GEHFKLHFNALVPAVVERLGDA------------KQPVR 99 (1418)
Q Consensus 40 ~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l--------~~~~~~~~~~ilp~LleklgD~------------k~~Vr 99 (1418)
-.+++.+.-....+.+.|.+..+..+-.+-+.+ ...|++|...++..+.+++.=. ...-|
T Consensus 290 l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR 369 (559)
T KOG2081|consen 290 LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFR 369 (559)
T ss_pred hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHH
Confidence 345555544445667789999998888776553 2368899999999998886311 12357
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHhhhhh-hcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcC--CCChhHH
Q 000565 100 DAARRLLLTLMEVSSPTIIVERAGSYAW-THRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLN--DPNPGVR 176 (1418)
Q Consensus 100 ~~a~~~L~~l~e~~~p~~v~e~ll~~~~-~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~--D~~~~VR 176 (1418)
.++.+.|..+.-.++.+..+..+..... ++..|..-++.+-.+...++.+.... .+++|.+++++- +-...+|
T Consensus 370 ~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e----~~i~pevl~~i~nlp~Q~~~~ 445 (559)
T KOG2081|consen 370 LKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEE----NTIMPEVLKLICNLPEQAPLR 445 (559)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccc----cchHHHHHHHHhCCccchhHH
Confidence 8888888888877777766655542122 35679999999999988888776543 356676666552 2233399
Q ss_pred HHHHHHHHHHHHhcC
Q 000565 177 EAAILCIEEMYTYAG 191 (1418)
Q Consensus 177 ~aA~~~L~~l~~~~G 191 (1418)
..++..++++-.|+.
T Consensus 446 ~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 446 YTSILLLGEYSEWVE 460 (559)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 227
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=80 Score=36.50 Aligned_cols=167 Identities=15% Similarity=0.218 Sum_probs=96.8
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhH-----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---h
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEV-----TSLVDCCLDLLKDNNFKVSQGALQSLASAAVL---S 72 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~-----~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~---l 72 (1418)
|.++-.+|.+++-..+.-++..+.-++++.+.. +..++ ..+.+.+...+...|-.|+.+|++.|..++.- +
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtn-aVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTN-AVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchh-hHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 455666777888888888888888888764411 12222 23445556678899999999999999888621 1
Q ss_pred hhhHHHHHhh--hHHHHHHHhCCCChHHHHHHHHHHHHHHHHhChh--------HHHHHHhhhhhhcCChHHHHHHHHHH
Q 000565 73 GEHFKLHFNA--LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT--------IIVERAGSYAWTHRSWRVREEFARTV 142 (1418)
Q Consensus 73 ~~~~~~~~~~--ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p~--------~v~e~ll~~~~~~KnprVr~~~l~~l 142 (1418)
.-.|...... =+-.|..|+ ++-+|-...+.+..+... +|. .+++.+.......+.-.|+..|++..
T Consensus 163 eaiFeSellDdlhlrnlaakc---ndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC---NDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHhcccccCChHHHhHHHhhh---hhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 1122221100 001112222 233566666666665532 232 23444443222337778999999999
Q ss_pred HHHHhh-cCCCcchhhhhhHHHHHHhcC--CCCh
Q 000565 143 TSAIGL-FSATELTLQRAILPPILQMLN--DPNP 173 (1418)
Q Consensus 143 ~~~l~~-fg~~~l~l~k~ll~~l~~lL~--D~~~ 173 (1418)
.++.+. +|.+-+. |..+|..++..+. |++|
T Consensus 239 teLaeteHgrefla-QeglIdlicnIIsGadsdP 271 (524)
T KOG4413|consen 239 TELAETEHGREFLA-QEGLIDLICNIISGADSDP 271 (524)
T ss_pred HHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCc
Confidence 888764 4554443 3567777777663 4444
No 228
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=25 Score=44.68 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=100.7
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 289 IGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACA 368 (1418)
Q Consensus 289 i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~ 368 (1418)
++..+..|+|--.|-.++-.+.---.|.+ + .+.+...|--.+.|.|.-|.+.|...|+.+.-.-
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTg----n----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-------- 586 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTG----N----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-------- 586 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccC----c----hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------
Confidence 33344456677777777765542222111 1 1223333334578999999999999888763221
Q ss_pred HHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccH
Q 000565 369 EMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSA 447 (1418)
Q Consensus 369 ~~llp~Ll~~~~~~-~~vi~~sa~~al~~i~~~~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~ 447 (1418)
...+|..+.++.++ |..+|-.+..+|...|..+|...-+..|- .+..|++--||+.++..+..|+-+..+. +-..+
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLe-pl~~D~~~fVRQgAlIa~amIm~Q~t~~--~~pkv 663 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLE-PLTSDPVDFVRQGALIALAMIMIQQTEQ--LCPKV 663 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHh-hhhcChHHHHHHHHHHHHHHHHHhcccc--cCchH
Confidence 12455556666555 78899999999999999999876666554 4447889999999999888877665542 22223
Q ss_pred HHHHHHHHHHhcCCChHH
Q 000565 448 DLYEDLIRCCVADAMSEV 465 (1418)
Q Consensus 448 ~~l~~~l~~~l~Dad~eV 465 (1418)
..+.+.+.+.+.|...++
T Consensus 664 ~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 664 NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHHHhhhhhhHH
Confidence 445555555666666554
No 229
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=74.96 E-value=43 Score=40.82 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=59.3
Q ss_pred HHHHHHHhhCCCchhhHHHHHHHHHHHHhcCCchh--hhHHHHHHhccC-CCchhHHHHHHHHHHHHhhhhcCCCCCCCc
Q 000565 877 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS--LLPALLRSLDEQ-RSPKAKLAVIEFAISSLNKHAMNSEGSGNL 953 (1418)
Q Consensus 877 ll~~l~~klgD~k~svr~~a~~~L~~~~~~~~~~~--~l~~l~~~l~~~-~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~ 953 (1418)
||--+++||||..+.|-++|.-.|..+-...|... ++..+.+|.+.. -..+.+.-.|.+|..+..+.
T Consensus 229 Ll~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt~l~~---------- 298 (821)
T COG5593 229 LLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQTELEN---------- 298 (821)
T ss_pred HHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHHHHhh----------
Confidence 33345677999999999999999999988888755 334444443321 12233333333333222111
Q ss_pred hhHHHHHHHHccccccCCHHHHHHHHHHHHHHhccCChHHHHHHHhhCCHHHH
Q 000565 954 GILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQ 1006 (1418)
Q Consensus 954 ~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~ 1006 (1418)
--++..+.|+.+|... |++++.++|++..
T Consensus 299 --------------------~e~~van~lv~vyf~~----f~kfl~n~~ke~~ 327 (821)
T COG5593 299 --------------------REKAVANKLVKVYFSI----FRKFLENIPKEHR 327 (821)
T ss_pred --------------------hHHHHHHHHHHHHHHH----HHHHHhcCchhhc
Confidence 1124456788899655 8888999998887
No 230
>PF05536 Neurochondrin: Neurochondrin
Probab=74.96 E-value=50 Score=42.16 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=108.8
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHH-----HHHhhcc------cchH-HHHHHHHHHHHH
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDC-----CLDLLKD------NNFK-VSQGALQSLASA 68 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~-----l~~~l~D------sN~~-V~~~al~~l~~l 68 (1418)
++.++..|++++=..|..|+--+.++++..+. +...-..+.+. +.+++.. .+.. -...|+.++..+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~--~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDE--DSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchh--hHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999875331 11111123332 2233322 2333 345678888887
Q ss_pred HHHhhhhHH--HHHhhhHHHHHHHhCCCCh-HHHHHHHHHHHHHHHH-hChhHHHH-----HHhhhhhhcCChHHHHHHH
Q 000565 69 AVLSGEHFK--LHFNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEV-SSPTIIVE-----RAGSYAWTHRSWRVREEFA 139 (1418)
Q Consensus 69 ~~~l~~~~~--~~~~~ilp~LleklgD~k~-~Vr~~a~~~L~~l~e~-~~p~~v~e-----~ll~~~~~~KnprVr~~~l 139 (1418)
+. .+.+. +.+-..+|.|++-+....+ .+.+.+.++|..++.. .+++.+++ .+.+ ...+ ++...+.++
T Consensus 85 ~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e-i~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE-IIPN-QSFQMEIAL 160 (543)
T ss_pred cC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH-HHHh-CcchHHHHH
Confidence 74 23333 4567789999999866655 7888899999998843 22333322 2333 2333 677777777
Q ss_pred HHHHHHHhhcCCCcc-----hhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc
Q 000565 140 RTVTSAIGLFSATEL-----TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 140 ~~l~~~l~~fg~~~l-----~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~ 190 (1418)
..+..++...+.... .+ ..+++.+...+......-+-.....|..+....
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 777777766553221 12 244555555555555555555555555554444
No 231
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.60 E-value=94 Score=41.93 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH--chhHHHHHhccCCHH
Q 000565 417 DRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT--WPERSRRLFSSFDPA 494 (1418)
Q Consensus 417 ~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~--~p~~a~~ll~~Ld~~ 494 (1418)
|-.|.||..|.+.|+..++.+|.. .+. +.+.+-+.-.|.|.+.+||..+-+++..|..+ +-...+.|++++...
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~-Fl~---dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEI-FLS---DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHH-Hhc---chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 557999999999999888888764 332 35677778899999999999999999998877 233455666676666
Q ss_pred HHHHH
Q 000565 495 IQRII 499 (1418)
Q Consensus 495 ~qk~L 499 (1418)
.-.+.
T Consensus 374 IVeMa 378 (1048)
T KOG2011|consen 374 IVEMA 378 (1048)
T ss_pred HHHHH
Confidence 66665
No 232
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=74.06 E-value=1e+02 Score=36.76 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCC-c-c--hHHH-HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAAD-H-P--CFRG-LLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAE 369 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~-~-~--~f~~-~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~ 369 (1418)
..-+|+.|.+.......++...... + + +|+. +-.+++..|..+..+....+ .+-..|..+ + +++..++
T Consensus 86 ~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec---~--k~e~l~~ 158 (335)
T PF08569_consen 86 PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLREC---I--KHESLAK 158 (335)
T ss_dssp GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHH---T--TSHHHHH
T ss_pred hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHH---H--hhHHHHH
Confidence 4578999999999999888754322 2 2 2333 22667777777777544321 111111111 1 2333344
Q ss_pred HHH-----HHHHHHhccchHHHHHHHHHHHHHHHHhC----------CccchHHHHHHHhhhCCCHHHHHHHHHHHHHHH
Q 000565 370 MFI-----PVLFKLVVITVLVIAESSDNCIKTMLRNC----------KAVRVLPRIADCAKNDRNAVLRARCCEYALLVL 434 (1418)
Q Consensus 370 ~ll-----p~Ll~~~~~~~~vi~~sa~~al~~i~~~~----------~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il 434 (1418)
.++ -.+++.+...+.-|+..|..++..++..= ++.+++..+...+ .+.|-.+|+.+.++|+.++
T Consensus 159 ~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 159 IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCeEeehhhHHHHHHHH
Confidence 333 24677777788888888888888876531 3457777666666 6789999999999999876
Q ss_pred HhCCCCccccccH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 435 EHWPDAPEIQRSA--DLYEDLIRCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 435 ~~~~~~~~l~~~~--~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
..=.....+.+++ +.....+..++.|....+|..|-..|-.|...
T Consensus 238 ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 238 LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 4322111222332 34556778899999999999999999888766
No 233
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=73.00 E-value=37 Score=34.65 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCC
Q 000565 16 RMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAK 95 (1418)
Q Consensus 16 R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k 95 (1418)
|..-...+..++.... +..+..+++.+...++. +.......+.+|..+.+...+ +....+.. +| +
T Consensus 5 ~~kl~~~l~~i~~~~~----P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~~~~~~~--~r----~ 69 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDW----PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----FRRSSLSQ--ER----R 69 (148)
T ss_dssp HHHHHHHHHHHHHHHT----TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----SHCCHSHH--HH----H
T ss_pred HHHHHHHHHHHHHHHC----hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----hhchhhhH--HH----H
Confidence 3344455555555432 12344566666655555 567777777777777655433 10000000 00 1
Q ss_pred hHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhH
Q 000565 96 QPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGV 175 (1418)
Q Consensus 96 ~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~V 175 (1418)
..+++...+.+..+. .++..++.......+..+...+++++.+.+.-.....+.- ..+++.+..+|. +++.
T Consensus 70 ~~l~~~l~~~~~~i~------~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~--~~~~ 140 (148)
T PF08389_consen 70 RELKDALRSNSPDIL------EILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQ--SPEL 140 (148)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTT--SCCC
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcC--CHHH
Confidence 111222211111111 1223333322222237778888888888777443333222 468999999994 4556
Q ss_pred HHHHHHHH
Q 000565 176 REAAILCI 183 (1418)
Q Consensus 176 R~aA~~~L 183 (1418)
|++|.+||
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999986
No 234
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=72.84 E-value=1.2e+02 Score=37.31 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHh-HHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHhhhhH---
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-VTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHF--- 76 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-~~~lv~~l~~~l~-DsN~~V~~~al~~l~~l~~~l~~~~--- 76 (1418)
..+++.+.|.|-++|.....-|..+....... ... ...+.+.+...+. ...+......|++++.++.+...-+
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~--r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNL--RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT--HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 35788899999999998888888887653221 111 1223334444444 4678888999999999998754222
Q ss_pred -HHH-HhhhHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHh--ChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCC
Q 000565 77 -KLH-FNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEVS--SPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 77 -~~~-~~~ilp~LleklgD~k~-~Vr~~a~~~L~~l~e~~--~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
... ...++|.. +...- .--..-..++..+++.- -...++..++. .|-.-|+.=..-.+.-+..+++.+..
T Consensus 214 h~~fl~~vllPLh----~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 214 HKQFLRKVLLPLH----KSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPKTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp HHHHHHHTTGGGG----GSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-SS-HHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHHhcCH
Confidence 222 23344432 22221 13466677778887752 12356777776 56555665555667777777776554
Q ss_pred Ccch-hhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHHHHHHHHHHHH
Q 000565 152 TELT-LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLE 216 (1418)
Q Consensus 152 ~~l~-l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~ 216 (1418)
..+. +...+...+..|+..++-.|-+.|.. -|..+.+...+. +-+...+..|...+.
T Consensus 289 ~~f~~i~~~lf~~la~ci~S~h~qVAErAl~------~w~n~~~~~li~--~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCISSPHFQVAERALY------FWNNEYFLSLIS--QNSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHG------GGGSHHHHHHHH--CTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHCCHHHHHHHH--hChHHHHHHHHHHHH
Confidence 4332 23578888999999999999887754 455566655555 333444554544433
No 235
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.72 E-value=1.2e+02 Score=34.83 Aligned_cols=158 Identities=12% Similarity=0.133 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH-----hcCCcHH-----HHHHHHHHHHHHHhhcChh------h
Q 000565 1243 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-----TKDAVPK-----VSNEAEHCLTVVLSQYDPF------R 1306 (1418)
Q Consensus 1243 ~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~-----~~d~~~~-----V~~aA~~al~~i~~~~~p~------~ 1306 (1418)
|-++....+.+.-.++++.--=+++|+-.++|.+|-+ +|+..+. +|.-|...++.++..++-. +
T Consensus 249 nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPR 328 (450)
T COG5095 249 NLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPR 328 (450)
T ss_pred hHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchH
Confidence 3444445566666667654444688988888877753 3443333 8888889999888876643 2
Q ss_pred HHHhh-hhhcc-ccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHhhh
Q 000565 1307 CLSVI-VPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY---IMLGK 1381 (1418)
Q Consensus 1307 ~l~~l-~~~l~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~---~~lg~ 1381 (1418)
+.+.+ ..+|. .+-+-+-.+|++++..+-++.=+-.+.+.+.-..--+.+.++.-+-+---.+-.|+=.++ .++-+
T Consensus 329 vtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~ 408 (450)
T COG5095 329 VTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQS 408 (450)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhc
Confidence 33322 23332 345567789999887655433222222222211112222333322222222223443344 36666
Q ss_pred cccccccccChHHHHHHHH
Q 000565 1382 AFLPYLERLNSTQLRLVTI 1400 (1418)
Q Consensus 1382 ~~~p~l~~L~~s~~kll~~ 1400 (1418)
+=.|-=..|.+..-+||+-
T Consensus 409 d~Lpnqr~~~~n~~~llek 427 (450)
T COG5095 409 DGLPNQRTLPPNASGLLEK 427 (450)
T ss_pred cCCCCccCCCCcHHHHHHH
Confidence 6666666777777777764
No 236
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.33 E-value=13 Score=34.92 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000565 1229 NQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 1297 (1418)
Q Consensus 1229 ~~ll~~ll~~l~d-~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~ 1297 (1418)
+.+|..+..++.+ .+..||+..|..+..|+.+.+..+..--..++.-+-.+..|..+.+...|=++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4455567777654 57779999999999999998888877777777777778888888998888888764
No 237
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.24 E-value=96 Score=43.16 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=61.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHh
Q 000565 126 AWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197 (1418)
Q Consensus 126 ~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~ 197 (1418)
...+.+++.|.-++..+..++...|...+.+..+.||.+.++++|-+.+|-..+..++-.+=..+|+.+..+
T Consensus 1549 ~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1549 KTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 455677899999999998889998987766558899999999999999999999998888888889876543
No 238
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.23 E-value=52 Score=41.18 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=105.3
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHh--ccccccccHHHHHHHHHHHhcCCcH
Q 000565 1209 LQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKN--QKDVMEDSVEIVIEKLLHVTKDAVP 1285 (1418)
Q Consensus 1209 l~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~-~~~vr~~aL~~L~~l~~~--~~~~~~~~~e~~l~~ll~~~~d~~~ 1285 (1418)
++-+..+++-+....-++....++..++.++... +...-+.+|.+|..+... .|.. .+..++.-|.-.++- .
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~---sl~~~i~vLCsi~~~--~ 229 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSE---SLSPCIEVLCSIVNS--V 229 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChH---HHHHHHHHHhhHhcc--c
Confidence 3334455555544333356788888888887654 444557899999999873 2222 222223222222222 2
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhhhhhcc--c----cchhhHHHHHHHHHHHHhhcCHHHHHh---hhhhhHHHHHHH
Q 000565 1286 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--T----EDEKTLVTCINCLTKLVGRLSQEELMA---QLPSFLPALFEA 1356 (1418)
Q Consensus 1286 ~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~--s----~~~~~~~~alk~l~~lv~~~~~~~l~~---~L~~l~p~l~~~ 1356 (1418)
.....+-.+++.|++.-.-...+..|+.+|. + .+....++|+.+++.++-..+.+.+.. .+..++|++..+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA 309 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH
Confidence 6677788899999987667788999999993 2 244577899999999886664444322 233499999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 000565 1357 FGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1357 ~~d~~seVRkaAv~~lv~~~ 1376 (1418)
+...++-|=-....++-.+-
T Consensus 310 l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HhCCCCeehHHHHHHHHHHH
Confidence 99887766665555544444
No 239
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.75 E-value=97 Score=36.72 Aligned_cols=135 Identities=17% Similarity=0.242 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhCC-hh-hHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHHHHhccccccccHHHHHHHHH----
Q 000565 1205 KHGALQQLIKASVAND-HS-IWTKYFNQILTAVLEVLDDADSSVRE-VALSLINEMLKNQKDVMEDSVEIVIEKLL---- 1277 (1418)
Q Consensus 1205 r~~al~~L~~~l~~~~-~~-~~~~~f~~ll~~ll~~l~d~~~~vr~-~aL~~L~~l~~~~~~~~~~~~e~~l~~ll---- 1277 (1418)
+++.|+-+..++.... .. +.......++..++.--.+..+..|+ .+|.++..|++..+..+.+++..++..++
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl 123 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4555655555554433 22 23333444455444444434455554 47999999999988877776555555544
Q ss_pred HHhcC---CcHHHHHHHHHHHHHHHhhc-------Chhh---HHHhhhhhccccchhhHHHHHHHHHHHHhhcCH
Q 000565 1278 HVTKD---AVPKVSNEAEHCLTVVLSQY-------DPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1339 (1418)
Q Consensus 1278 ~~~~d---~~~~V~~aA~~al~~i~~~~-------~p~~---~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~ 1339 (1418)
+.+.+ .-++.|..-=..++++..++ ||+. ++..+.-.+.+....+-..||+.+..+++.+..
T Consensus 124 ~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 124 PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 55543 45788888888888888764 3333 333333344445555667788888888877765
No 240
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=71.65 E-value=23 Score=39.92 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHH
Q 000565 131 SWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCI 183 (1418)
Q Consensus 131 nprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L 183 (1418)
+|-||.+++..|..+.+ ...++.+.++++|..+-||+.+.-+|
T Consensus 233 ~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred chHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45556655555543221 34555555666666666655554444
No 241
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.51 E-value=6.2 Score=31.05 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=26.7
Q ss_pred hhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 159 AILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 159 ~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
-.+|.++.+|.+.+++||+.|..+|..|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998875
No 242
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=71.16 E-value=14 Score=35.80 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=40.4
Q ss_pred CChhhHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHhcCCch
Q 000565 868 KPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD 910 (1418)
Q Consensus 868 ~~~~~~l~~ll~~l~~klgD~k~svr~~a~~~L~~~~~~~~~~ 910 (1418)
+.+.++...++..+..-|.+....||.-+.+.|+.+.+++|..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3578999999999999999999999999999999999999998
No 243
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=71.11 E-value=29 Score=40.97 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHH--HhhhHHHH
Q 000565 10 AKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH--FNALVPAV 87 (1418)
Q Consensus 10 s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~--~~~ilp~L 87 (1418)
..||..-++..+.+..-. ..-..-++.|.+.++..++.|+..||..+.+++.++|+.|... ...+...|
T Consensus 23 ~enW~~IlDvCD~v~~~~---------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDP---------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred cccHHHHHHHHHhhcCCC---------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 357877666665553222 1123567778889999999999999999999999999987653 33455554
Q ss_pred HHHhC-CCChHHHHHHHHHHHHHHHH
Q 000565 88 VERLG-DAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 88 leklg-D~k~~Vr~~a~~~L~~l~e~ 112 (1418)
..-+. .....|+++...++..+.+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 44444 45566788877777777764
No 244
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.88 E-value=45 Score=36.64 Aligned_cols=141 Identities=16% Similarity=0.045 Sum_probs=77.5
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCC-ChHHHHHH-HHHHHHHHHHhChhHHHHH
Q 000565 44 DCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDA-KQPVRDAA-RRLLLTLMEVSSPTIIVER 121 (1418)
Q Consensus 44 ~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~-k~~Vr~~a-~~~L~~l~e~~~p~~v~e~ 121 (1418)
+.+..++.+.+......|+.++.......... .++.+-.-+.+- .=.+.+.. ..++..+.... ....+.
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~-------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~ 124 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTEE-------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALEL 124 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH-------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH-------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHH
Confidence 33444567777777777776665433211111 122222112111 11123333 23333332221 223333
Q ss_pred HhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhhc
Q 000565 122 AGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR 200 (1418)
Q Consensus 122 ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~~ 200 (1418)
+.+ ..+++|+-+|...+..+...+.. .++ ..++..+..++.|++.-||.+...+|.++++.-.+.+..+|..
T Consensus 125 ~~~-W~~s~~~w~rR~~~v~~~~~~~~-----~~~-~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEK-WAKSDNEWVRRAAIVMLLRYIRK-----EDF-DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHH-HHHCSSHHHHHHHHHCTTTHGGG-----CHH-HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHH-HHhCCcHHHHHHHHHHHHHHHHh-----cCH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 433 67778876665555444333332 233 5788888889999999999999999999999988888888875
No 245
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.54 E-value=1.7e+02 Score=38.54 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000565 299 WSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKL 378 (1418)
Q Consensus 299 W~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~ 378 (1418)
|..-..-+-.+..+.......+..+++.+-++.. .-.+...|-++++.+..+|+.++.-++..- .++...+|.|++-
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~a--sik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSA--SIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcc--ccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHH
Confidence 7666666666777775444333333322222221 223445599999999999999999998651 2677889999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhCCc--cc----hHHHHHHHhh--hCCCHHHHHHHHHHHHHHHHhCCCC
Q 000565 379 VVITVLVIAESSDNCIKTMLRNCKA--VR----VLPRIADCAK--NDRNAVLRARCCEYALLVLEHWPDA 440 (1418)
Q Consensus 379 ~~~~~~vi~~sa~~al~~i~~~~~~--~~----llp~l~~~l~--~~Kn~~vR~~~~e~L~~il~~~~~~ 440 (1418)
+.+++ ..+.+...|..+++-|.. .- ++....+.+- +. .+..|......++.+++...++
T Consensus 558 Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~-~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 558 LHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA-KDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred hcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc-CchHHHHHHHHHHHHHHhccHH
Confidence 98777 666777789999999864 22 2222222221 12 2456777778888888877643
No 246
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.83 E-value=74 Score=42.32 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHHHhhCChhhHHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHH
Q 000565 1202 PTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQ-KDVMEDSVEIVIEKLLH 1278 (1418)
Q Consensus 1202 ~~~r~~al~~L~~~l~~~~~~~~~~~f-~~ll~~ll~~l~d~-~~~vr~~aL~~L~~l~~~~-~~~~~~~~e~~l~~ll~ 1278 (1418)
+|+|.-|..-|..+......- -..++ +.++...++.++|. .+-.|+.+++.|..|-.+. .++|.---...-.||+.
T Consensus 571 ~EqrtmaAFVLAviv~nf~lG-Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLG-QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchh-HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 467777777776555542211 11233 45666788899884 5669999999999987664 35565555567889999
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhhcC---hhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHH
Q 000565 1279 VTKDAVPKVSNEAEHCLTVVLSQYD---PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1355 (1418)
Q Consensus 1279 ~~~d~~~~V~~aA~~al~~i~~~~~---p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~ 1355 (1418)
.+.|+..+||.||.-|+.+++.... .++... +- ..-.|+.....+|. .+..++ | .+..
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~-~~----------~~~~l~~~~~~~E~----~i~~~~---~-~ll~ 710 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV-VE----------EEIDLDDERTSIED----LIIKGL---M-SLLA 710 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhh-hh----------hhhcchhhhhhHHH----HHHhhH---H-HHHH
Confidence 9999999999999999999887641 111110 00 01112222222221 111111 2 4556
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 000565 1356 AFGNQSADVRKTVVFCLVD 1374 (1418)
Q Consensus 1356 ~~~d~~seVRkaAv~~lv~ 1374 (1418)
...|..+-||++.+.++..
T Consensus 711 ~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred HHhccchHHHHHHHHHHHH
Confidence 6789999999997777653
No 247
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=68.98 E-value=46 Score=43.40 Aligned_cols=124 Identities=20% Similarity=0.338 Sum_probs=85.3
Q ss_pred HHHHHhcCC--ChHHHHHHHHHHHHHHHhcc-cccccc----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Q 000565 1234 AVLEVLDDA--DSSVREVALSLINEMLKNQK-DVMEDS----------VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 1300 (1418)
Q Consensus 1234 ~ll~~l~d~--~~~vr~~aL~~L~~l~~~~~-~~~~~~----------~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~ 1300 (1418)
.|.+++.+. .-..|+.|+..|+...+.-. +.|+.| -..+...+++.+-|+..+++.++..|+..|+.
T Consensus 40 aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~ 119 (1005)
T KOG2274|consen 40 ALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAA 119 (1005)
T ss_pred HHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHh
Confidence 566666654 34489999888887665432 222221 23455666677779999999999999999998
Q ss_pred hcChh---hHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHh
Q 000565 1301 QYDPF---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 1357 (1418)
Q Consensus 1301 ~~~p~---~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~ 1357 (1418)
.-=|+ .+++++...|.+.+....++|+++|..+....--++.-...+..+|.....+
T Consensus 120 ~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f 179 (1005)
T KOG2274|consen 120 VDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF 179 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 75554 5888888888777788889999999988876654444444444444444443
No 248
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.88 E-value=35 Score=42.02 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=68.5
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCCccchHHHHHHH
Q 000565 335 STQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNCKAVRVLPRIADC 413 (1418)
Q Consensus 335 ~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~-~~vi~~sa~~al~~i~~~~~~~~llp~l~~~ 413 (1418)
--.+.|.|.-|.+.|...|+.++-.= ..+++..++.+.++ +..+|-...-+|...+..++....+..|- .
T Consensus 558 h~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~-~ 628 (926)
T COG5116 558 HYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILE-A 628 (926)
T ss_pred eeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHH-H
Confidence 34578999999999998888763211 13456666666555 67788777788888888777765555443 3
Q ss_pred hhhCCCHHHHHHHHHHHHHHHHhCCC
Q 000565 414 AKNDRNAVLRARCCEYALLVLEHWPD 439 (1418)
Q Consensus 414 l~~~Kn~~vR~~~~e~L~~il~~~~~ 439 (1418)
+..+.+--||+.++..+..|+.+..+
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 43678888999999888888877765
No 249
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.28 E-value=7.9 Score=30.96 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.3
Q ss_pred hhhHHHHHHhcCCCChhHHHHHHHHH
Q 000565 158 RAILPPILQMLNDPNPGVREAAILCI 183 (1418)
Q Consensus 158 k~ll~~l~~lL~D~~~~VR~aA~~~L 183 (1418)
+.+...+...|.|+.+.||++|.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888899999999999999998864
No 250
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=67.73 E-value=2.6e+02 Score=32.99 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=59.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccCh---HhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhhhHH
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTS---AEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFK 77 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~---~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~--l~~~~~ 77 (1418)
-|+..+.+.||.....+..-|..++...+..... ..+..+++.+...++.++..+...++.++..++.. .+..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 3667777899999999999999998765433211 22334444444444456777889999999998733 233332
Q ss_pred HHHhhhHHHHHHHh----CCCChHHHHHHHHHHHHHHHH
Q 000565 78 LHFNALVPAVVERL----GDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 78 ~~~~~ilp~Llekl----gD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
. ...++.+++-+ +..+....+...+++..+|-.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 1 33444444444 233444567777888888754
No 251
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=67.58 E-value=65 Score=33.12 Aligned_cols=106 Identities=13% Similarity=0.197 Sum_probs=72.2
Q ss_pred HHHHHHHHhhCCCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhhcCCC--CCCCc
Q 000565 876 RILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE--GSGNL 953 (1418)
Q Consensus 876 ~ll~~l~~klgD~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~--~~~~~ 953 (1418)
.-...++.+|+-++.+++.+++-||+. .+ -.+.+++.++.-+.+. +...|.-++-|+-. |.+...... .....
T Consensus 8 ~~F~~~L~~L~aS~qSi~kaa~fAlk~-~~--~~edL~~cIle~le~~-~lN~R~nI~~fID~-l~e~~~~~~~~~~~Yv 82 (139)
T PF12243_consen 8 MQFTQLLRRLNASQQSIQKAAQFALKN-RD--MEEDLWSCILEQLEKE-NLNTRINIFYFIDS-LCESSQKSKKYNYPYV 82 (139)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHc-cc--cHHHHHHHHHHHHhcc-chhhHHHHHHHHHH-HHHHHHhcccccchhH
Confidence 345678999999999999999999998 32 3467788888888654 77889999888744 655434333 22222
Q ss_pred hhHHHHHHHHccccccC-CH--HHHHHHHHHHHHHh
Q 000565 954 GILKLWLAKLTPLVHDK-NT--KLKEAAITCIISVY 986 (1418)
Q Consensus 954 ~~~~~~l~~i~~l~~dk-s~--~vR~aA~~~l~aly 986 (1418)
..+...+.+|+.+..+. +. .-++.+..+|..+-
T Consensus 83 ~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 83 SMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 45677888999887653 33 34555555555544
No 252
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=66.73 E-value=16 Score=35.72 Aligned_cols=68 Identities=15% Similarity=0.276 Sum_probs=56.4
Q ss_pred chhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 000565 1319 DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLER 1389 (1418)
Q Consensus 1319 ~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~ 1389 (1418)
.+..+..++.-++.+++-.+ ..+...+|.++-.|..+++ .+|.|..|..|.-.+-..+.+ ++.|.++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~ 96 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45568899999999997545 7888899999999999997 557999999999888888885 77777654
No 253
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.73 E-value=2.7e+02 Score=33.26 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=103.8
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh-hhH
Q 000565 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL-GDF 364 (1418)
Q Consensus 286 l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg-~~f 364 (1418)
.+.+.+.+..+.+=.....++..+..-+.....+.+ ..++..|.++++|.+..|.+.-+.+++.+..... ...
T Consensus 24 ~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~------~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 24 VQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP------KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 344555555555555566666666554432211222 4678889999999999988888888888765111 234
Q ss_pred HHHHHHHHHHHHHHhccch--HHHH--HHHHHHHHHHHH-------------------hCCcc-c--hHHHHHHHhhhCC
Q 000565 365 EACAEMFIPVLFKLVVITV--LVIA--ESSDNCIKTMLR-------------------NCKAV-R--VLPRIADCAKNDR 418 (1418)
Q Consensus 365 ~~~~~~llp~Ll~~~~~~~--~vi~--~sa~~al~~i~~-------------------~~~~~-~--llp~l~~~l~~~K 418 (1418)
..++..++|.|++.+.+.. ..-+ .....|.-.++. .++.+ . +-+.+...+.
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~--- 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA--- 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC---
Confidence 5678888888888774321 1000 000111111111 11111 1 1123332210
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcccccc-HHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHchhH-HHHHh
Q 000565 419 NAVLRARCCEYALLVLEHWPDAPEIQRS-ADLYEDLIRCCVADA--MSEVRSTARMCYRMFAKTWPER-SRRLF 488 (1418)
Q Consensus 419 n~~vR~~~~e~L~~il~~~~~~~~l~~~-~~~l~~~l~~~l~Da--d~eVR~~Ar~a~~~l~~~~p~~-a~~ll 488 (1418)
...--.-++..|..++...... .... ...+-.++..++..+ ..+||..|.+++..+...-|+. +..++
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~--~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li 246 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSE--LSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLI 246 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 1222222333333333333321 1111 245677788888888 8999999999999988888874 34444
No 254
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=66.56 E-value=70 Score=41.77 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccch---------------------hhHHHH-HHHHHHHHhhcCHHHH
Q 000565 1285 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDE---------------------KTLVTC-INCLTKLVGRLSQEEL 1342 (1418)
Q Consensus 1285 ~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~---------------------~~~~~a-lk~l~~lv~~~~~~~l 1342 (1418)
..++..+..|++.|+...+|..|+-.++..|..-.. ..+..| +++|..+..|+++.--
T Consensus 80 ~~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~~Ll~~l~~~l~ri~t~~p 159 (633)
T PF08568_consen 80 SPCVDCCMKCLEELARLGNPKELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFYCLLELLQIVLKRIQTKYP 159 (633)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhcccch
Confidence 688999999999999999999888777777752111 122333 4888888888875444
Q ss_pred HhhhhhhHHHHHHHhcC
Q 000565 1343 MAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1343 ~~~L~~l~p~l~~~~~d 1359 (1418)
.+.|...++++.+.+..
T Consensus 160 s~Fl~~~l~~i~~~~~~ 176 (633)
T PF08568_consen 160 SRFLAMALSAILNFLKN 176 (633)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 44455555566555554
No 255
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.00 E-value=4.6e+02 Score=35.27 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhh--------cccchHHHHHHHHHHHHHHHHhhh--hHHHHHh-hhH
Q 000565 16 RMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLL--------KDNNFKVSQGALQSLASAAVLSGE--HFKLHFN-ALV 84 (1418)
Q Consensus 16 R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l--------~DsN~~V~~~al~~l~~l~~~l~~--~~~~~~~-~il 84 (1418)
+.+|+.-+..+...-++ ..+..++..+...+ ...|++-..+||.+++.++..+.+ -++..+. .++
T Consensus 389 ~~Aa~~~l~~~~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred cHHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 56677777766665322 22344444433333 346888889999999999977643 3444443 345
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHH-hChhHH----HHHHhhhhhh-cCChHHHHHHHHHHHHHHhhcCCCc--c-h
Q 000565 85 PAVVERLGDAKQPVRDAARRLLLTLMEV-SSPTII----VERAGSYAWT-HRSWRVREEFARTVTSAIGLFSATE--L-T 155 (1418)
Q Consensus 85 p~LleklgD~k~~Vr~~a~~~L~~l~e~-~~p~~v----~e~ll~~~~~-~KnprVr~~~l~~l~~~l~~fg~~~--l-~ 155 (1418)
+.++--+.++-...|..|.+.|..+++. +..+.+ ++-..+ ++. ++.=-||.++..+|...+..-.... + +
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~-~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHN-CLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH-HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 6666677888888999999999999953 333333 333344 666 4444578877777776665422111 1 1
Q ss_pred hhhhhHHHHHHhcCCCChhHHHHHHHHHHH
Q 000565 156 LQRAILPPILQMLNDPNPGVREAAILCIEE 185 (1418)
Q Consensus 156 l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~ 185 (1418)
..++++..+.++..+-+.+.=...++.++.
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~ 573 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVC 573 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 114555566666666666555444444433
No 256
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.90 E-value=25 Score=44.39 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=90.1
Q ss_pred HHHhcCC--CHHHHHHHHHHH---HHHHHhhhcccChHhHHHHHHHH----HHhhc--------ccchHHHHHHHHHHHH
Q 000565 5 LELARAK--DTKERMAGVERL---HQLLEASRKSLTSAEVTSLVDCC----LDLLK--------DNNFKVSQGALQSLAS 67 (1418)
Q Consensus 5 l~~l~s~--~Wk~R~~ale~L---~~~l~~~~~~~~~~~~~~lv~~l----~~~l~--------DsN~~V~~~al~~l~~ 67 (1418)
...|.+. +-|.|..+++-+ ...+.... ...+..+-..+ .+.+. ..+......+.++|+.
T Consensus 325 ~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~----~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 325 FDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS----PQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred hccccCCccccccchhcchhhhcchHHhhhcC----HHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 4556666 678888888888 66665432 22233333333 24442 2366788999999999
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCh--h-------HHHHHHhhhhhhcCChHHHHHH
Q 000565 68 AAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP--T-------IIVERAGSYAWTHRSWRVREEF 138 (1418)
Q Consensus 68 l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p--~-------~v~e~ll~~~~~~KnprVr~~~ 138 (1418)
++.+....+... -.++-.|++.|.+....+|-.+++||..+...+.. + ...+.++.....+....+|..+
T Consensus 401 L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~a 479 (501)
T PF13001_consen 401 LAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAA 479 (501)
T ss_pred HHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999987776443 34567788888777888999999999999986432 1 1122222222334456788888
Q ss_pred HHHHHHHH
Q 000565 139 ARTVTSAI 146 (1418)
Q Consensus 139 l~~l~~~l 146 (1418)
++|...++
T Consensus 480 vk~an~~f 487 (501)
T PF13001_consen 480 VKYANACF 487 (501)
T ss_pred HHHHHHhC
Confidence 88887654
No 257
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=65.77 E-value=28 Score=36.66 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH--------hChhHHHHHHhh
Q 000565 53 NNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV--------SSPTIIVERAGS 124 (1418)
Q Consensus 53 sN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~--------~~p~~v~e~ll~ 124 (1418)
....+...++-++..+.+..++.+...+..++..++++-... -.-.+..++..+... +.-+.+++.++.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 445566777777777777777777777777777776443221 223444444444322 222344555554
Q ss_pred hhhh--cCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcC-CCChh-HHHHHHHHHHH
Q 000565 125 YAWT--HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLN-DPNPG-VREAAILCIEE 185 (1418)
Q Consensus 125 ~~~~--~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~-D~~~~-VR~aA~~~L~~ 185 (1418)
... .++..+...+++.|..+.-.-.....-. +.+++++...+. ..+.. ||..|.-.|+.
T Consensus 94 -~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 94 -LASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -HHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred -HHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 334 6777888888888876543211111222 789999999995 55555 78888877765
No 258
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.52 E-value=79 Score=38.27 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHh-CC--CChHHHHHHHHHHHHHHHHh----------Ch-----h
Q 000565 55 FKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL-GD--AKQPVRDAARRLLLTLMEVS----------SP-----T 116 (1418)
Q Consensus 55 ~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llekl-gD--~k~~Vr~~a~~~L~~l~e~~----------~p-----~ 116 (1418)
.....+|++++..+++.-++.....+...+..++... .+ .+-.-++.|...+..++... ++ +
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 3456789999999987766655555555566666542 22 23334666777766666421 01 1
Q ss_pred HHHHHHhhhhhh---cCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHH
Q 000565 117 IIVERAGSYAWT---HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCI 183 (1418)
Q Consensus 117 ~v~e~ll~~~~~---~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L 183 (1418)
+....+++ -+. .+.|-+|..+|+.+...-+.+.... + ..++|.++.+|.+++.-|+..|..++
T Consensus 305 Ff~~~v~p-eL~~~~~~~piLka~aik~~~~Fr~~l~~~~--l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLP-ELQPDVNSHPILKADAIKFLYTFRNQLPKEQ--L-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCH-HHH-SS-S-HHHHHHHHHHHHHHGGGS-HHH--H-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHH-HhcccCCCCcchHHHHHHHHHHHHhhCCHHH--H-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11222222 222 5678899999988876555544322 3 47899999999999999999988764
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.51 E-value=1.4e+02 Score=33.57 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=74.6
Q ss_pred cCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---
Q 000565 1240 DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--- 1316 (1418)
Q Consensus 1240 ~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~--- 1316 (1418)
+..++......|..|.+++.+ +. .....++..|......++....--+...+..+..+- +++.+.|.+++.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~---~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACH---KN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHFPFLQPLLLLLI 84 (234)
T ss_pred CCCChHHHHHHHHHHHHHhcc---Cc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHH
Confidence 345666777778888888763 33 334344444444444455555444555555444431 122222222221
Q ss_pred ----------ccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 000565 1317 ----------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF-GNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1317 ----------s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~-~d~~seVRkaAv~~lv~~~ 1376 (1418)
+..|...+++--.+..+.+..+ + |-+++++.|...+ ++.+..++..|+.+|..+|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRP-D----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 2244444443345556664444 3 7788899999999 8999999999999988888
No 260
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=64.93 E-value=53 Score=34.49 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHHHhhcCC--CcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChh
Q 000565 131 SWRVREEFARTVTSAIGLFSA--TELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ 193 (1418)
Q Consensus 131 nprVr~~~l~~l~~~l~~fg~--~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~ 193 (1418)
++.|.+.++..|-+++..... .... .+.-++.+...|+++++++...|+.++..|+...++.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~-~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVE-QEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHh-ccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 577888888888777653211 0011 1345788999999999999999999999999998865
No 261
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.88 E-value=14 Score=36.68 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-----ccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhC
Q 000565 363 DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK-----AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHW 437 (1418)
Q Consensus 363 ~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~-----~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~ 437 (1418)
.||.|...+....|.-..-- ..=..+-++.. --.++-.|...+.++.++.+-..+|.=|+.+++.+
T Consensus 5 sfdeY~~El~sg~L~WSP~H---------~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~ 75 (119)
T PF11698_consen 5 SFDEYLSELESGHLEWSPVH---------KSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY 75 (119)
T ss_dssp HHHHHHHHHHHT-----GGG---------G-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhcCCccccCCC---------CCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHC
Confidence 46777776666666543211 11223444443 12556666666633446777777788888888888
Q ss_pred CCCccccccHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 438 PDAPEIQRSAD--LYEDLIRCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 438 ~~~~~l~~~~~--~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
+..+. .++ -..+.|..++.+.|++||+.|-.|+..++.+
T Consensus 76 p~gr~---ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 76 PNGRN---IIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GGGHH---HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred hhHHH---HHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 65321 111 1345677899999999999999999887643
No 262
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=63.92 E-value=1.2e+02 Score=37.31 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhccccc
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVM 1265 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~-~~~vr~~aL~~L~~l~~~~~~~~ 1265 (1418)
....+..|. .+ ++--..-|+.-|..++..+...........++.++...+... +......|+..|+.|++....|.
T Consensus 103 ~~~fl~lL~-~~--d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLN-RQ--DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF 179 (429)
T ss_pred hHHHHHHHc-CC--chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH
Confidence 444555443 22 244666677777777765543322222333555677777643 34456678899999998877762
Q ss_pred cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhcc-ccchhhHHHHHHHHHHHHh
Q 000565 1266 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVG 1335 (1418)
Q Consensus 1266 ~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~ 1335 (1418)
.-+-...++.|++.+....-.++-.=+.++-.|.-.|.++ .+++.+..++. +.+.++.+.|+-.+..++.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 1111124455555554332244445555555666555554 47777777775 4567777777777777775
No 263
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.71 E-value=49 Score=41.75 Aligned_cols=110 Identities=24% Similarity=0.179 Sum_probs=83.5
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccc-Ch----HhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSL-TS----AEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEH 75 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~-~~----~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~ 75 (1418)
|+.|.+.|.+..+..|-.-+|.+.+++......- -. ..++.+++.+...+.|.++-+..+|++.+..++...-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4678888999999999999999888876543210 11 246778888888999999999999999999998664333
Q ss_pred HHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 000565 76 FKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME 111 (1418)
Q Consensus 76 ~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e 111 (1418)
.+ --..++..++.++.|...-||..|...+..+.-
T Consensus 381 ~~-~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VG-RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cc-hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 22 234566667778899999999999988877653
No 264
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=63.26 E-value=1.9e+02 Score=32.28 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc--------CCCchhHHHHHHHHHHhhhhccCCChh---hHHHHHHH
Q 000565 811 AFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL--------DDPHHKVAQAALSTLADIIPSCRKPFE---SYMERILP 879 (1418)
Q Consensus 811 gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l--------~Dsn~kV~~~~Le~l~~li~~~~~~~~---~~l~~ll~ 879 (1418)
.++.|+.+|.+.+..+.. -+++.++-.+..-+ .+....++...-++|..++..|+..+. +.+-.++-
T Consensus 8 ~l~~l~~ll~~~~~~~sq--~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~ 85 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQ--YNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQ 85 (223)
T ss_pred HHHHHHHHHhcCchhccc--hhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHH
Confidence 355666777665442221 34555555554433 345557889999999999988876553 44444445
Q ss_pred HHHHhhC-------CCchhhHHHH------HHHHHHHHhcCCchhhhHHHHHHhccC-----CCchhHHHHHHHHHHHHh
Q 000565 880 HVFSRLI-------DPKELVRQPC------STTLDIVSKTYSVDSLLPALLRSLDEQ-----RSPKAKLAVIEFAISSLN 941 (1418)
Q Consensus 880 ~l~~klg-------D~k~svr~~a------~~~L~~~~~~~~~~~~l~~l~~~l~~~-----~~~k~k~~~L~~l~~~l~ 941 (1418)
.|+..+- ......-..+ ...|..+.+. ..+.+.-... +..+.|..+=.|+..+|.
T Consensus 86 ~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep-------~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~ 158 (223)
T PF10441_consen 86 RLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEP-------SSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLA 158 (223)
T ss_pred HHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCc-------ccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 5555543 1111111111 1111111111 0000000000 012344444455544554
Q ss_pred hhhcCCCCCCCchhHHHHHHHHccc-c-ccCCHHHHHHHHHHHHHHhccCChHHHHHHHhhCCHHHHHHHHHHHh
Q 000565 942 KHAMNSEGSGNLGILKLWLAKLTPL-V-HDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 1014 (1418)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~l~~i~~l-~-~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 1014 (1418)
.| +.. + ..=.++||++=..++.+|+...+...+......|+.+.+...+...+
T Consensus 159 ~Y--------------------i~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 159 NY--------------------ISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred HH--------------------HHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 44 111 1 22578999999999999999888776555556677777766554433
No 265
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=63.08 E-value=2.2e+02 Score=30.59 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=88.4
Q ss_pred cChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHh
Q 000565 34 LTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS 113 (1418)
Q Consensus 34 ~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~ 113 (1418)
+....+..+++.+.+...+.+.......+++|..-+...+ .+.+.+..++..|..+.. ..++....+.+..-.+..
T Consensus 11 lt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~---~~f~~~ll~~~~~~f~~~ 86 (209)
T PF02854_consen 11 LTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFP---SEFRSLLLNRCQEEFEER 86 (209)
T ss_dssp CSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHh
Confidence 3344566777766554444477777777777766654433 344444555555554444 123333333333322210
Q ss_pred ChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCCh----hHHHHHHHHHHHHHHh
Q 000565 114 SPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNP----GVREAAILCIEEMYTY 189 (1418)
Q Consensus 114 ~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~----~VR~aA~~~L~~l~~~ 189 (1418)
......+ ......++-+.+.+.++..+.. +|. ++. +.++..+..++.+... .--+..+++++.+..+
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~fl~eL~~-~~v--v~~-~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~ 157 (209)
T PF02854_consen 87 YSNEELE-----ENRQSSKQRRRGNIRFLAELFN-FGV--VSE-KIIFDILRELLSDGTDECQPPPDEENIECLCTLLKT 157 (209)
T ss_dssp T-HHHHH-----HHHHHHHHHHHHHHHHHHHHHH-TTS--SCH-HHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHH
T ss_pred hhhhhHH-----HHHHHHHHHHhhhhhHHHhhHh-hcc--ccc-hhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHH
Confidence 0000011 1122233445556666665543 232 333 4555566666655544 3355778999999999
Q ss_pred cChhHH--HhhhcCCCCHHHHHHHHHHHHHh
Q 000565 190 AGPQFR--DELHRHNLPNSMVKDINARLERI 218 (1418)
Q Consensus 190 ~G~~l~--~~L~~~~l~~~~l~~l~~~f~~~ 218 (1418)
+|..+. ... +..++++...+...
T Consensus 158 ~G~~l~~~~~~------~~~l~~~~~~~~~~ 182 (209)
T PF02854_consen 158 CGKKLENSEES------PKALDEIFERLQKY 182 (209)
T ss_dssp HHHHHHHCHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCc------hhHHHHHHHHHHHH
Confidence 999887 333 36677777776654
No 266
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=63.08 E-value=1.2e+02 Score=38.60 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc-------cchHHHHHH
Q 000565 343 SSIVKQACHLLCFLSK---ELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-------VRVLPRIAD 412 (1418)
Q Consensus 343 s~V~~~A~~~l~~La~---~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~-------~~llp~l~~ 412 (1418)
-.+++.||.|+..++. .++..|+ -..++..|++.+.+....|-.++..+|.-++-..+. .-.+..+.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3567788988877654 5555543 223444444555555555666777777666654443 245677777
Q ss_pred HhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCC
Q 000565 413 CAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFD 492 (1418)
Q Consensus 413 ~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld 492 (1418)
.. .++-+++|....-+|..+.=..+.....+-..+.....|...++|+|.+|.+.+.+.+.-|-----+..+-++...+
T Consensus 469 ~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 469 ML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred Hh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 77 68889999866655554432222211111123445667788999999999987766554443222344566666555
Q ss_pred HHHH
Q 000565 493 PAIQ 496 (1418)
Q Consensus 493 ~~~q 496 (1418)
.-..
T Consensus 548 ~~ld 551 (678)
T KOG1293|consen 548 DVLD 551 (678)
T ss_pred HHHH
Confidence 4333
No 267
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=62.54 E-value=34 Score=36.33 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCCHHHHHH
Q 000565 419 NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRI 498 (1418)
Q Consensus 419 n~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~ 498 (1418)
--.+|..++|+|..++...... + ....+.+.+..|+.| +.++|--+...+..|....|.....-+..|=+..++.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~--~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSR--I--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSS--S---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999976543 2 245678889999999 9999999999999999999999888788888889999
Q ss_pred Hhh
Q 000565 499 INE 501 (1418)
Q Consensus 499 L~~ 501 (1418)
|..
T Consensus 115 L~~ 117 (169)
T PF08623_consen 115 LSK 117 (169)
T ss_dssp HH-
T ss_pred hhc
Confidence 875
No 268
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=61.96 E-value=14 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=26.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1348 SFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1348 ~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
..+|.|++.+.+.+.+|++.|..|+..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999987764
No 269
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=61.86 E-value=1e+02 Score=37.83 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=49.6
Q ss_pred hHHHhhhhhcc-ccchhhHHHHHHHHHHHHhhc--CHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1306 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1306 ~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~--~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
.+++.|..+|. +.+..+...|+.=++.+++++ |+..+...- .-..+.+.|.|.|++||+.|..|+=.++
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg--~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG--GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC--cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47788888884 445555666666688888887 455554322 2356788899999999999999977664
No 270
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=61.50 E-value=78 Score=31.79 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=61.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhh---cccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhH
Q 000565 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLL---KDNNFKVSQGALQSLASAAVLSGEHFKLHFNALV 84 (1418)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l---~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~il 84 (1418)
..+.+|..--.-+++|..... +..++..+++.+.+.+ ..++|.+..+||.+|..++.+-.+.|...+..-+
T Consensus 12 T~~d~~gp~~~~l~eIa~~t~------~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~ 85 (125)
T PF01417_consen 12 TSNDPWGPPGKLLAEIAQLTY------NSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI 85 (125)
T ss_dssp TSSSSSS--HHHHHHHHHHTT------SCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH
T ss_pred cCCCCCCcCHHHHHHHHHHHh------ccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 345668777777776655432 2356788889888877 7899999999999999999775555554443322
Q ss_pred HHHH--HHh--CC--CCh---HHHHHHHHHHHHHH
Q 000565 85 PAVV--ERL--GD--AKQ---PVRDAARRLLLTLM 110 (1418)
Q Consensus 85 p~Ll--ekl--gD--~k~---~Vr~~a~~~L~~l~ 110 (1418)
..|- ..+ .| .++ .||+.|.+++..+.
T Consensus 86 ~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 86 DIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 2221 112 12 222 38888888777654
No 271
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=61.20 E-value=1e+02 Score=31.80 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCc-cccc
Q 000565 368 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAP-EIQR 445 (1418)
Q Consensus 368 ~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~-~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~-~l~~ 445 (1418)
+..-+..+|+.+.-+...+..+|.-|| +|-.. ..+++.|++.+ .+.+-+.|...+.+++.+.+...... ....
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAl----k~~~~~edL~~cIle~l-e~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFAL----KNRDMEEDLWSCILEQL-EKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHH----HccccHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 444566677777777655555555444 55444 68899999999 45688999999999998776643321 0122
Q ss_pred cHHHHHHHHHH----HhcCCCh--HHHHHHHHHHHHHHHH
Q 000565 446 SADLYEDLIRC----CVADAMS--EVRSTARMCYRMFAKT 479 (1418)
Q Consensus 446 ~~~~l~~~l~~----~l~Dad~--eVR~~Ar~a~~~l~~~ 479 (1418)
++..+...|.+ .+-+.+. .-+..+++.+..++..
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k 120 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKK 120 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHc
Confidence 33333332222 2333333 4566777777666554
No 272
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=61.16 E-value=1e+02 Score=33.65 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=71.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccC-hHhHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLT-SAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~-~~~~~~lv~~l~-~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1418)
.++.+...|-=+.|..|...|..++......+. .++...+.+.+. ......||......+..+..+. .+..|.
T Consensus 11 ~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-----~~~~y~ 85 (193)
T PF12612_consen 11 GLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL-----DLPEYR 85 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh-----ccHHHH
Confidence 466677778889999999999999944322111 122333333322 1111235666666776666664 234677
Q ss_pred hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 000565 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 81 ~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
..++-+|+--.|...+.+...+..+|..++..
T Consensus 86 ~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 86 YSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred HHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999863
No 273
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=59.63 E-value=35 Score=37.60 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=83.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhh
Q 000565 1235 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL 1314 (1418)
Q Consensus 1235 ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~ 1314 (1418)
+.+...+.....|-.|+.++..... .++.-....+...+. ..|.-..+=..|..++..+.... +...+.+..+
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~----~~~~~~~~~~~~~~~-~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W 128 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRK----KLTEEDLELLEKWLP-DIDNWATCDSLCSKLLGPLLKKH--PEALELLEKW 128 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGG----G--HHHHHHHHHCCC-CCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhh----hhhHHHHHHHHHHhc-cCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 3344445555555556555544222 111101112222222 33443444444455555544332 6778888889
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 000565 1315 LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1389 (1418)
Q Consensus 1315 l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~ 1389 (1418)
+.+++.=.+..++-++...+.. ..++.+...+...++|.+-.|||+.-.+|-.+...-.+.+.+||..
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9877654566666655555544 3445666778888899999999999999999998888888888865
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=58.92 E-value=2.1e+02 Score=37.93 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcC----
Q 000565 1228 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD---- 1303 (1418)
Q Consensus 1228 f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~---- 1303 (1418)
.+.+-..+...+-|+...||..||..+..++.-+++++ .+.||..+++.+.|+.--++++++.++-.=-..+.
T Consensus 470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~---~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~ 546 (1529)
T KOG0413|consen 470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE---AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKK 546 (1529)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc---hHHHHHHhcCCccccchhHHHhchhhhhcccCccccccc
Confidence 44455567777779989999999999999999877765 45678888899999888888777766531111111
Q ss_pred ------hh-h--------------------HHHhhhhhcc-ccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHH
Q 000565 1304 ------PF-R--------------------CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1355 (1418)
Q Consensus 1304 ------p~-~--------------------~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~ 1355 (1418)
+. + ++..|..-+. ..+.+.+..++..++-....++-+.+ .++.+-.|-.
T Consensus 547 tt~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~---fe~~L~iLq~ 623 (1529)
T KOG0413|consen 547 TTDLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK---FEVVLSILQM 623 (1529)
T ss_pred chhhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc---chhHHHHHHH
Confidence 10 0 1111111121 22334555566555555545543333 3443445667
Q ss_pred HhcCCCHHHHHHHHHHHHHHH
Q 000565 1356 AFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1356 ~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
...|+-..|||.+-..|..+.
T Consensus 624 lCrd~~vsvrk~~~~Sltel~ 644 (1529)
T KOG0413|consen 624 LCRDRMVSVRKTGADSLTELM 644 (1529)
T ss_pred HhcCcchHHHHHHHHHHHHHH
Confidence 778999999999888877766
No 275
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=56.77 E-value=32 Score=33.34 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=50.6
Q ss_pred CHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHHHHHHHHHHhhhhc
Q 000565 1338 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQA 1408 (1418)
Q Consensus 1338 ~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~kll~~yi~r~~~~ 1408 (1418)
+++.+.++.+.++.++..||.|=.++||.-|...|--+-.+.|+++ ....--|+++-|+.=....
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~------~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDEL------CSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHh------HhhhHHHHHHHHHHHHCCC
Confidence 4678899999999999999999999999999999877777777651 1233456777777655433
No 276
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=56.51 E-value=4.8e+02 Score=32.40 Aligned_cols=185 Identities=14% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHhhCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhc----cccccccHHHHHHHHHHHhcCCcHHHH
Q 000565 1214 KASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVTKDAVPKVS 1288 (1418)
Q Consensus 1214 ~~l~~~~~~~~~~~f~~ll~~ll~~l~d~-~~~vr~~aL~~L~~l~~~~----~~~~~~~~e~~l~~ll~~~~d~~~~V~ 1288 (1418)
..+++.....-......+...+..+.+++ |+.--...++.+..+++.. +..+..|-+.++|.+...+.....+-.
T Consensus 55 ~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~ 134 (435)
T PF03378_consen 55 SVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFI 134 (435)
T ss_dssp HHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445565555666666663 5544445555555555543 233445556666666666665544444
Q ss_pred HHHHHHHHHHHhhcC----hhhHHHhhhhhccccchh--hHHHHH-HHHHHHHhhcCHHHHH-hhhhhhHHHHHHHhcCC
Q 000565 1289 NEAEHCLTVVLSQYD----PFRCLSVIVPLLVTEDEK--TLVTCI-NCLTKLVGRLSQEELM-AQLPSFLPALFEAFGNQ 1360 (1418)
Q Consensus 1289 ~aA~~al~~i~~~~~----p~~~l~~l~~~l~s~~~~--~~~~al-k~l~~lv~~~~~~~l~-~~L~~l~p~l~~~~~d~ 1360 (1418)
--+=..+..++...+ |+.-...+.|++.-.-|. .++-|+ ++|...+++.+...+. .+|..++-..-+.+...
T Consensus 135 PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 135 PYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 444555555555543 233444444555444453 344444 7788888777755542 46667775555677766
Q ss_pred CHHHHHHHHHHHHHHHHHhhh-cccccccccChHHHHHHHHHHHhhhh
Q 000565 1361 SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQ 1407 (1418)
Q Consensus 1361 ~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~~kll~~yi~r~~~ 1407 (1418)
.-| -.+.+-+-++..+++- .+.||++. ++.+-+.|.+.
T Consensus 215 ~~D--~~gF~LL~~iv~~~p~~~l~~yl~~-------I~~lll~RLq~ 253 (435)
T PF03378_consen 215 AND--HYGFDLLESIVENLPPEALEPYLKQ-------IFTLLLTRLQS 253 (435)
T ss_dssp TCH--HHHHHHHHHHHHHS-HHHHGGGHHH-------HHHHHHHHHHH
T ss_pred Ccc--hHHHHHHHHHHHHCCHHHHHHHHHH-------HHHHHHHHHhh
Confidence 555 4577888888888884 67888753 34444555443
No 277
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=56.48 E-value=29 Score=39.86 Aligned_cols=95 Identities=12% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc----ccchhhHHHHHHHHHHHHhhcCHHHHHhhh----hhhHHHH
Q 000565 1282 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQL----PSFLPAL 1353 (1418)
Q Consensus 1282 d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~----s~~~~~~~~alk~l~~lv~~~~~~~l~~~L----~~l~p~l 1353 (1418)
.++.+--+-...|+..+.+.--|..+++-+.|.|+ ..+.-++..+++-+..++|.+++..+...+ ..+.|-+
T Consensus 54 enhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 34445555577777777777666666666666665 345556888899999999999977765543 5889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1354 FEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1354 ~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
..++...+-+|-|+|...+-.+-
T Consensus 134 ldcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999976553
No 278
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=54.65 E-value=4.8e+02 Score=31.82 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhc---ccChHh----HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh
Q 000565 2 EEALELARA-KDTKERMAGVERLHQLLEASRK---SLTSAE----VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG 73 (1418)
Q Consensus 2 e~~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~---~~~~~~----~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~ 73 (1418)
|+.++.+.. ++...+.+.+..+....+-.-- ..++.+ -..|++.+..|+...|.+....+.-+|+.++++-.
T Consensus 268 e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~ 347 (604)
T KOG4500|consen 268 EDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD 347 (604)
T ss_pred HHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch
Confidence 455666665 6666666666666554432110 000100 12478888899999999999999999999986622
Q ss_pred h---hHH-HHHhhhHHHHHH-HhCCCChHHHHHHHHHHHHHHH------HhChhHHHHHHhhhhhhcCChHHHHHHHHHH
Q 000565 74 E---HFK-LHFNALVPAVVE-RLGDAKQPVRDAARRLLLTLME------VSSPTIIVERAGSYAWTHRSWRVREEFARTV 142 (1418)
Q Consensus 74 ~---~~~-~~~~~ilp~Lle-klgD~k~~Vr~~a~~~L~~l~e------~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l 142 (1418)
. ..+ ..++.++..|.. +--|.+..+.-++..+|..++= .+-|..|.+.++. .++.-.|.|..-.+..+
T Consensus 348 ~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~-~lk~~~ppv~fkllgTl 426 (604)
T KOG4500|consen 348 ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL-QLKLASPPVTFKLLGTL 426 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHH-HHHhcCCcchHHHHHHH
Confidence 1 122 234444444433 3344455556677777777762 1345567777776 56666677665544444
Q ss_pred HHHHhh--cCCCcchhhhhhHHHHHHhcCCCChh-HHHHHHHHHHHHHHhc
Q 000565 143 TSAIGL--FSATELTLQRAILPPILQMLNDPNPG-VREAAILCIEEMYTYA 190 (1418)
Q Consensus 143 ~~~l~~--fg~~~l~l~k~ll~~l~~lL~D~~~~-VR~aA~~~L~~l~~~~ 190 (1418)
.-++.. |-...+--.++++..++.+-..++-. |--..-.++..+.+|.
T Consensus 427 rM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 427 RMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred HHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence 322221 10101100156777788877776644 6666666666666663
No 279
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=2.1e+02 Score=40.82 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=94.1
Q ss_pred HHHhhcccch-HHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCCh---HHHHHHHHHHH------HHHHHhCh
Q 000565 46 CLDLLKDNNF-KVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQ---PVRDAARRLLL------TLMEVSSP 115 (1418)
Q Consensus 46 l~~~l~DsN~-~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~---~Vr~~a~~~L~------~l~e~~~p 115 (1418)
+.-.-+|++. .|+.-+|.++..+++..++-+..++...+..++..|-.... .|+..--.++. ++....+|
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 3445689888 88888999999998887888888888877777766533332 23333333333 44433222
Q ss_pred ----hH---HHHH-----Hhh--hhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHH
Q 000565 116 ----TI---IVER-----AGS--YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAIL 181 (1418)
Q Consensus 116 ----~~---v~e~-----ll~--~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~ 181 (1418)
.. .... +.. ..+.|.++-+..+.+.++.. +..|.+...++ ..+|+.++.+|..+.--.|.+.+.
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqq-lhlFapr~~n~-~~lV~~L~~~l~s~~~i~r~~~~~ 1120 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQ-LHLFAPRHVNL-DSLVLQLCSLLSSSYLILRRASFS 1120 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHhhcchhccH-HHHHHHHHHHhcchhhhhhhhHHh
Confidence 11 1111 111 13556778888888887765 55677777777 789999999998888888888888
Q ss_pred HHHHHHHhc
Q 000565 182 CIEEMYTYA 190 (1418)
Q Consensus 182 ~L~~l~~~~ 190 (1418)
++-++...-
T Consensus 1121 clrql~~Re 1129 (2067)
T KOG1822|consen 1121 CLRQLVQRE 1129 (2067)
T ss_pred hhhHHhHHH
Confidence 887776543
No 280
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.11 E-value=1.6e+02 Score=35.01 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccC---hHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhhhHH
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLT---SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFK 77 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~---~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~--l~~~~~ 77 (1418)
.|++-+...++..=-+|+..+..++-....-.. ...++.|+..+.+++...|......++..|+.++.. .-..+.
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 467778889999999999999999876432110 234677888778899999999999999999999733 123455
Q ss_pred HHHh--hhHHHHHHHhCCCChHHHHHHHHHHHHHHHH-hChhHHHHHH
Q 000565 78 LHFN--ALVPAVVERLGDAKQPVRDAARRLLLTLMEV-SSPTIIVERA 122 (1418)
Q Consensus 78 ~~~~--~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~-~~p~~v~e~l 122 (1418)
+|+. .-+-.++..|.|....|+-.|-.+...++.. -.|..|.+-|
T Consensus 248 ~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 6655 3556677789999988999998888877754 2333444433
No 281
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=54.06 E-value=68 Score=32.22 Aligned_cols=96 Identities=16% Similarity=0.329 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CCCchhHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 000565 802 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 878 (1418)
Q Consensus 802 s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l---~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll 878 (1418)
+.+|.---.-+..|.++.-+. .++..|++.+.+|| ..++.++...+|..|-.++..-.+.|-+|+..-+
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--------~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~ 85 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--------KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI 85 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--------HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH
T ss_pred CCCCCcCHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 446665555555555433331 26789999999999 7788899999999999999988888888886444
Q ss_pred HHHH--Hhh-C-CC--c---hhhHHHHHHHHHHHHh
Q 000565 879 PHVF--SRL-I-DP--K---ELVRQPCSTTLDIVSK 905 (1418)
Q Consensus 879 ~~l~--~kl-g-D~--k---~svr~~a~~~L~~~~~ 905 (1418)
..+- ..+ + |. + -.||.+|.++++.+.+
T Consensus 86 ~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 86 DIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 3322 222 1 22 2 3489999999987753
No 282
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=53.89 E-value=4e+02 Score=30.66 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=106.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcccChH-----------------hHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000565 5 LELARAKDTKERMAGVERLHQLLEASRKSLTSA-----------------EVTSLVDCCLDLLKDNNFKVSQGALQSLAS 67 (1418)
Q Consensus 5 l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~-----------------~~~~lv~~l~~~l~DsN~~V~~~al~~l~~ 67 (1418)
++.|.+..=.+=.+|++-|.+++...+ ++.+ .+..+...+.+++..++ ..+.+++++..
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~d--l~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~ 88 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLD--LDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS--TYELTLRLLSR 88 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcC--CchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC--cHHHHHHHHHH
Confidence 445555555666677777777776533 1111 12223333344444432 44667777777
Q ss_pred HHHHh-----hh---hHHHHHhhhHHHHHHHhCCCC-----hHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhhcCChHH
Q 000565 68 AAVLS-----GE---HFKLHFNALVPAVVERLGDAK-----QPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRV 134 (1418)
Q Consensus 68 l~~~l-----~~---~~~~~~~~ilp~LleklgD~k-----~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnprV 134 (1418)
+.... |. -+--.+-..+|.++..+.+.+ +.+++.| +.|..+++..+-. -+.+++. .+..+..|-
T Consensus 89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A-~~La~~a~~~~~~-~La~il~-~ya~~~fr~ 165 (262)
T PF14225_consen 89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA-EALAQVAEAQGLP-NLARILS-SYAKGRFRD 165 (262)
T ss_pred HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-HHHHHHHHhCCCc-cHHHHHH-HHHhcCCCC
Confidence 76432 11 222355667899999988777 3444443 5666666643222 2445554 233333377
Q ss_pred HHHHHHHHHHHHhh-cCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 135 REEFARTVTSAIGL-FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 135 r~~~l~~l~~~l~~-fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
+...+..+...+.+ |.+. .. -.++-.+..+|++.-+.+|...+.+|..+..++.
T Consensus 166 ~~dfl~~v~~~l~~~f~P~-~~--~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFFPD-HE--FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred HHHHHHHHHHHHHHHhCch-hH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 77777777777765 4432 22 2677889999999999999999999999987754
No 283
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=52.45 E-value=91 Score=30.93 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhc
Q 000565 1243 DSSVREVALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL 1315 (1418)
Q Consensus 1243 ~~~vr~~aL~~L~~l~~~~~~---~~~~~~e~~l~~ll~~~~----d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l 1315 (1418)
+....+.||..+..|++..+. .+..+++-++..|+..-. +...+.|..|..++-. ..|..+.++|+..+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v----~~P~~~~~~L~~~f 93 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVV----AAPEKVAPYLTEEF 93 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHH----HSGGGHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence 455678899999999998877 899999999988887665 4567777777666542 45889999888777
Q ss_pred cccch--hhHHHHHHHH
Q 000565 1316 VTEDE--KTLVTCINCL 1330 (1418)
Q Consensus 1316 ~s~~~--~~~~~alk~l 1330 (1418)
=+.++ ..|+.-|..|
T Consensus 94 ~~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 94 FSGDYSLQQRMSILSAL 110 (114)
T ss_dssp TTS---THHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 55544 3444444443
No 284
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.31 E-value=3.7e+02 Score=35.40 Aligned_cols=163 Identities=19% Similarity=0.267 Sum_probs=97.8
Q ss_pred CcchHH-HHHHHHHHHHHhhhc-------------cccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----
Q 000565 319 DHPCFR-GLLKQLVGPLSTQLS-------------DRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVV---- 380 (1418)
Q Consensus 319 ~~~~f~-~~L~~L~~~L~~~l~-------------D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~---- 380 (1418)
|.++|. .++++.+..|++.+. ..=-.+..+.|+.+...++.....|.+++..++...-.++.
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~ 302 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSP 302 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 444443 366666666665555 11224455679999999999999999999988875444433
Q ss_pred cchH-HHHHHHHHHHHHHHHhCCcc------chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHH
Q 000565 381 ITVL-VIAESSDNCIKTMLRNCKAV------RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDL 453 (1418)
Q Consensus 381 ~~~~-vi~~sa~~al~~i~~~~~~~------~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~ 453 (1418)
++++ .+...|..-|..+++.-++. .++..|++... -.|-..|..--|. .-+...+-
T Consensus 303 ~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vv-lpN~~lR~eDeEl----------------FED~pleY 365 (960)
T KOG1992|consen 303 DTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVV-LPNLILREEDEEL----------------FEDNPLEY 365 (960)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhc-ccccccchhhHHH----------------hccCHHHH
Confidence 2332 34556666677777666654 34444444331 2232223211111 11235668
Q ss_pred HHHHhcCCChHH-HHHHHHHHHHHHHHchhHHHHHhccCCHHHHHHHhh
Q 000565 454 IRCCVADAMSEV-RSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINE 501 (1418)
Q Consensus 454 l~~~l~Dad~eV-R~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L~~ 501 (1418)
+++-+.-+|-++ |.+|...+..|.++|-.....++ +.-.++.|++
T Consensus 366 iRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~---~~~v~~~l~~ 411 (960)
T KOG1992|consen 366 IRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVF---SSEVQRLLDQ 411 (960)
T ss_pred HHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHH---HHHHHHHHHH
Confidence 889999999998 56778888889999854444443 3445556554
No 285
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.30 E-value=2.3e+02 Score=38.48 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhhhcccChHhHHHHHHHH-HHhhcccchHHHHHHHHHHHHHHHHhhhhHHH--HHhhhHHHHHHHhC
Q 000565 16 RMAGVERLHQLLEASRKSLTSAEVTSLVDCC-LDLLKDNNFKVSQGALQSLASAAVLSGEHFKL--HFNALVPAVVERLG 92 (1418)
Q Consensus 16 R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l-~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~--~~~~ilp~Lleklg 92 (1418)
|++.+.......+.....+ ..-++.+++.+ .....|..+.+..-+++-|+..+...++.|-. |+.. +.. -|.
T Consensus 262 rle~Ll~~r~etqe~~d~i-~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKY-iGW---tLs 336 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEI-ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKY-IGW---TLS 336 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHH-hcc---eee
Confidence 5666666666665432211 11234444443 35568999999999999999999887775532 3222 122 267
Q ss_pred CCChHHHHHHHHHHHHHHHHhChhHH--------HHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHH
Q 000565 93 DAKQPVRDAARRLLLTLMEVSSPTII--------VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPI 164 (1418)
Q Consensus 93 D~k~~Vr~~a~~~L~~l~e~~~p~~v--------~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l 164 (1418)
|....||..+..+|..+.+......- -+++++.+-.+-+.-||...+..+..... ..-++ ..=+-.+
T Consensus 337 Dk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~---~g~L~--d~di~~V 411 (1048)
T KOG2011|consen 337 DKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS---SGLLS--DKDILIV 411 (1048)
T ss_pred cCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc---ccccC--hhHHHHH
Confidence 99999999999999999987322211 23444434456677777766555443221 11122 3445567
Q ss_pred HHhcCCCChhHHHHHHHHHHH
Q 000565 165 LQMLNDPNPGVREAAILCIEE 185 (1418)
Q Consensus 165 ~~lL~D~~~~VR~aA~~~L~~ 185 (1418)
..++=|.++.|+-+|...+..
T Consensus 412 y~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 412 YSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHhccCcchHHHHHHHHHH
Confidence 788889999999888877644
No 286
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.03 E-value=6.9e+02 Score=32.65 Aligned_cols=318 Identities=15% Similarity=0.139 Sum_probs=165.6
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhc--ChhHH
Q 000565 118 IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA--GPQFR 195 (1418)
Q Consensus 118 v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~--G~~l~ 195 (1418)
++.++++ .++++.--.+..+|..+...=+.|...++.+ .+.....+||.+.+-.|+-.|.-++--+..+. .+.+.
T Consensus 461 iv~hv~P-~f~s~ygfL~Srace~is~~eeDfkd~~ill--~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 461 IVNHVIP-AFRSNYGFLKSRACEFISTIEEDFKDNGILL--EAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHHHhhH-hhcCcccchHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 4444454 6777777788889999888755676666543 78889999999988899988888887766543 22233
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCC---CcchhhhhhcccCCCCCCCccccCCCcccccCCCCCcccccCC
Q 000565 196 DELHRHNLPNSMVKDINARLERIQPQIRSSDGLP---NTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIE 272 (1418)
Q Consensus 196 ~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~---~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~ 272 (1418)
.+.. ..|+.|... .+.-. .+.-. ..|.. -+.+.+.
T Consensus 538 ahVp------~tmekLLsL-Sn~fe----iD~LS~vMe~fVe-------------------------------~fseELs 575 (970)
T COG5656 538 AHVP------ETMEKLLSL-SNTFE----IDPLSMVMESFVE-------------------------------YFSEELS 575 (970)
T ss_pred hhhh------HHHHHHHHh-ccccc----chHHHHHHHHHHH-------------------------------HhHHhhc
Confidence 3221 222222210 00000 00000 00000 0000011
Q ss_pred CccccChHHHHHHHHHhhhhc-C------CCCCHHHHHHHHHHHHHH---HhcCCCCcchHHH-HHHHHHHHHHhhhccc
Q 000565 273 PIKVYSEKELIREFEKIGSTL-V------PDKDWSVRIAAMQRVEGL---VLGGAADHPCFRG-LLKQLVGPLSTQLSDR 341 (1418)
Q Consensus 273 ~i~i~s~~dl~~~l~~i~~~l-~------~~~dW~~R~~AL~~L~~l---l~~~~~~~~~f~~-~L~~L~~~L~~~l~D~ 341 (1418)
|.-.-=...|.+++-+|.-.+ . +..| .+.+.|.-.|+.+ +..-. ..+..+. ....+.+.+.-.+++-
T Consensus 576 pfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD-DKqmaasGiL~T~~smiLSle-n~p~vLk~le~slypvi~Filkn~ 653 (970)
T COG5656 576 PFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD-DKQMAASGILRTIESMILSLE-NRPLVLKYLEVSLYPVISFILKNE 653 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcccccccc-HHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhh
Confidence 110000122333333333332 1 1122 4555555444443 33211 1222221 1122334445556677
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc----ch-HHHHHHHHHHHHHHHHhCC--------ccchHH
Q 000565 342 RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVI----TV-LVIAESSDNCIKTMLRNCK--------AVRVLP 408 (1418)
Q Consensus 342 rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~----~~-~vi~~sa~~al~~i~~~~~--------~~~llp 408 (1418)
-+-+-+|||..+....-.. +.+..+++.+++++.+ .. .+..+.+..++..++..=+ +..++-
T Consensus 654 i~dfy~Ea~dildg~tf~s-----keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~ 728 (970)
T COG5656 654 ISDFYQEALDILDGYTFMS-----KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICS 728 (970)
T ss_pred HHHHHHHHHHHHhhhhHHH-----HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHH
Confidence 7788899998887653332 2345566666665543 33 2567788888888876542 123443
Q ss_pred HHHH-HhhhCCC-HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHH--HhcCCChHHHHHHHHHHHHHHHHchhHH
Q 000565 409 RIAD-CAKNDRN-AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRC--CVADAMSEVRSTARMCYRMFAKTWPERS 484 (1418)
Q Consensus 409 ~l~~-~l~~~Kn-~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~--~l~Dad~eVR~~Ar~a~~~l~~~~p~~a 484 (1418)
.|.. ++.++-| -.=+..+|..+..++-.+.++ .++..++.+.+++.. .+.|-.+-.+.+|-+..-.-.-.-|...
T Consensus 729 eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~-Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eT 807 (970)
T COG5656 729 EISKLCLCSEENFLEDFIGVCRIIESLILNIRDE-LLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKET 807 (970)
T ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHHHHccch-hHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHH
Confidence 3433 3333333 233555677777777777664 566677877887773 4677777777777665543333335555
Q ss_pred HHHh
Q 000565 485 RRLF 488 (1418)
Q Consensus 485 ~~ll 488 (1418)
-+++
T Consensus 808 LqiL 811 (970)
T COG5656 808 LQIL 811 (970)
T ss_pred HHHH
Confidence 4444
No 287
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=3e+02 Score=35.66 Aligned_cols=167 Identities=14% Similarity=0.217 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhcC-----C---ChHHHHHHHHHHHHHHH--hccccccccHH-HHHHHHHHHhcCCcHHHHHHHHHH
Q 000565 1226 KYFNQILTAVLEVLDD-----A---DSSVREVALSLINEMLK--NQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHC 1294 (1418)
Q Consensus 1226 ~~f~~ll~~ll~~l~d-----~---~~~vr~~aL~~L~~l~~--~~~~~~~~~~e-~~l~~ll~~~~d~~~~V~~aA~~a 1294 (1418)
+.|..+|.-+..+++. + |.--.|.||+++..+.. .....+.+-.+ -+++.++-..+++.--.+..|.+.
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 3577777788877732 2 23345789999999866 33344443333 366777777888766666666666
Q ss_pred HHHHHhhcC-hhhHHHhh---hhhccccchhhHH-HHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHH
Q 000565 1295 LTVVLSQYD-PFRCLSVI---VPLLVTEDEKTLV-TCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVV 1369 (1418)
Q Consensus 1295 l~~i~~~~~-p~~~l~~l---~~~l~s~~~~~~~-~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv 1369 (1418)
+..+-.-++ +..++.+. ...+.+..-|..+ +|+-+...++..-..+.+..|+|.+|..|...-++=+.++=....
T Consensus 484 is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 484 ISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 655533332 22233222 3344455556555 445555666665556778889999999999999999999887766
Q ss_pred HHHHHHHHHhhhcccccccccChHHH
Q 000565 1370 FCLVDIYIMLGKAFLPYLERLNSTQL 1395 (1418)
Q Consensus 1370 ~~lv~~~~~lg~~~~p~l~~L~~s~~ 1395 (1418)
..+| ..+.+++-||=+.|..+-.
T Consensus 564 e~fV---e~fseELspfa~eLa~~Lv 586 (970)
T COG5656 564 ESFV---EYFSEELSPFAPELAGSLV 586 (970)
T ss_pred HHHH---HHhHHhhchhHHHHHHHHH
Confidence 6655 4557789999988877653
No 288
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=50.85 E-value=2.9e+02 Score=35.28 Aligned_cols=138 Identities=15% Similarity=0.083 Sum_probs=92.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhh---cccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHH-Hh
Q 000565 6 ELARAKDTKERMAGVERLHQLLEASR---KSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH-FN 81 (1418)
Q Consensus 6 ~~l~s~~Wk~R~~ale~L~~~l~~~~---~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~-~~ 81 (1418)
.....+|-..+.+|+..+..+-.... ..... .+..+-+.+.+.|+...|...++-+|..++-..+..=..+ -.
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ 460 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN 460 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCcc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc
Confidence 33446778888888888876644322 12211 2444555666789989999999999999875544322222 23
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCh-------hHHHHHHhhhhhhcCChHHHHHHHHHHHHHH
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP-------TIIVERAGSYAWTHRSWRVREEFARTVTSAI 146 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~~p-------~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l 146 (1418)
..+..+.+-+.+....+|..+.++|..++=.+.- ..+....+-...+++.|-|.++|++.+-++.
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 5677788888888889999999999988743221 1223333333567999999999998887654
No 289
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.61 E-value=3.1e+02 Score=32.51 Aligned_cols=165 Identities=14% Similarity=0.212 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHhhCChh----hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccc---c-----ccccH
Q 000565 1202 PTSKHGALQQLIKASVANDHS----IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD---V-----MEDSV 1269 (1418)
Q Consensus 1202 ~~~r~~al~~L~~~l~~~~~~----~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~---~-----~~~~~ 1269 (1418)
|+.|..=. +|.+.+....+. ...+.|+.++..+.-.+++.+..|.+.||.+|.+|+++... . +..|.
T Consensus 134 Pe~r~~ff-~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 134 PEHRVNFF-KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp HHHHHHHH-HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55665544 544554443222 34567999999999999999999999999999999887644 1 45667
Q ss_pred HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc-c-cch-hhHHHHHHHHHHHHhhcCHHHHHhh
Q 000565 1270 EIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-T-EDE-KTLVTCINCLTKLVGRLSQEELMAQ 1345 (1418)
Q Consensus 1270 e~~l~~ll~~~~d~-~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~-s-~~~-~~~~~alk~l~~lv~~~~~~~l~~~ 1345 (1418)
-.++..++..+-|+ ++..-..-...+..+.....-.. +-.|... . .+- -.......+|...+.++.++++...
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~---i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~f 289 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGS---IQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENF 289 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT----SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHccc---ccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 77888888888776 34433333344444432211110 0111111 0 011 1122223555566666676666543
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000565 1346 LPSFLPALFEAFGNQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1346 L~~l~p~l~~~~~d~~seVRkaAv~~lv~~ 1375 (1418)
+ -++.+..+ ...+-|..-+.-++.+
T Consensus 290 v----~~Lf~~~~-d~~~Fk~~lrDFlI~~ 314 (319)
T PF08767_consen 290 V----QGLFELNN-DPEKFKTHLRDFLIQL 314 (319)
T ss_dssp H----HHHHHTTT--HHHHHHHHHHHHHHH
T ss_pred H----HHHHHhcC-CHHHHHHHHHHHhhhh
Confidence 3 45555544 3455566655555554
No 290
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.45 E-value=39 Score=36.74 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---hhhhHHH
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL---SGEHFKL 78 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~---l~~~~~~ 78 (1418)
.-|+++|...+...|.-|-+.+.+++...++++ .+-+-+++.-|+..+...|-.|...+|.+|..+... .|..+-+
T Consensus 117 p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~ki-lpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 117 PLFFDGLAETDHPYRFVARQGITDLLLAGGEKI-LPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHhhhhhhcCCCcchhhhhcHHHHHHhccccc-ccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 347888999999999999999999998766554 234567788888889999999999999999988744 3567778
Q ss_pred HHhhhHHHH
Q 000565 79 HFNALVPAV 87 (1418)
Q Consensus 79 ~~~~ilp~L 87 (1418)
+..+++|.+
T Consensus 196 fYRQlLp~~ 204 (262)
T KOG3961|consen 196 FYRQLLPVL 204 (262)
T ss_pred HHHHhhhhh
Confidence 888888875
No 291
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.21 E-value=1.4e+02 Score=35.65 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcC---HHHHHhhhhhh
Q 000565 1273 IEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS---QEELMAQLPSF 1349 (1418)
Q Consensus 1273 l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~---~~~l~~~L~~l 1349 (1418)
|-.++..+... ...+..+..+++.|+... ++.|...|.+.+......||++|+.++.--+ ..++-..+.--
T Consensus 29 L~~~l~~ls~~-~~~~~~g~~l~~~iL~~~-----~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~ 102 (330)
T PF11707_consen 29 LALLLKKLSSD-LSFQSYGLELIRSILQNH-----LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFS 102 (330)
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHHHHHHH-----HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 33333444333 337777888888888663 8888888887777777799999999996333 23333444444
Q ss_pred HHHHHHHhcCCC-------------HHHHHHHHHHHHHHHHHhh
Q 000565 1350 LPALFEAFGNQS-------------ADVRKTVVFCLVDIYIMLG 1380 (1418)
Q Consensus 1350 ~p~l~~~~~d~~-------------seVRkaAv~~lv~~~~~lg 1380 (1418)
.+++.+.+..+. ++||.+.+..+.++.....
T Consensus 103 ~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 103 LKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred hhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCC
Confidence 455555443322 2899999888888776554
No 292
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.32 E-value=1.3e+02 Score=34.77 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcH
Q 000565 1232 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP 1285 (1418)
Q Consensus 1232 l~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~ 1285 (1418)
+..|.+.+.+.++.||..|...|-.+.......|..|-+..+.-|.+..+|+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 456788899999999999987777766555566888888899999999999866
No 293
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=48.16 E-value=5.2e+02 Score=30.33 Aligned_cols=201 Identities=13% Similarity=0.178 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCC-Ccc--hHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAA-DHP--CFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMF 371 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~-~~~--~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~l 371 (1418)
.+-+|+-|.+++.....++.-... -++ +++.-=.++...|.+...+ .+ .-|+.|=..|-+.. .|+..++.+
T Consensus 89 ~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~--~~--~iaL~cg~mlrEci--rhe~Lakii 162 (342)
T KOG1566|consen 89 PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN--TP--EIALTCGNMLRECI--RHEFLAKII 162 (342)
T ss_pred hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc--ch--HHHHHHHHHHHHHH--hhHHHHHHH
Confidence 567899999999988888764332 122 2322223444455444222 11 11111111111111 223333332
Q ss_pred HH-----HHHHHhccchHHHHHHHHHHHHHHHHh----------CCccchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHh
Q 000565 372 IP-----VLFKLVVITVLVIAESSDNCIKTMLRN----------CKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1418)
Q Consensus 372 lp-----~Ll~~~~~~~~vi~~sa~~al~~i~~~----------~~~~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~ 436 (1418)
+- ..+..+...+.-|+.-|..+...++.. -++..+++...+.+..+.|-.+|+....+|+.++..
T Consensus 163 L~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llld 242 (342)
T KOG1566|consen 163 LESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLD 242 (342)
T ss_pred HcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhC
Confidence 21 222223333333444444444333321 123455677566666788999999999998877665
Q ss_pred CCCCccccccHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc--hhHHHHHhccCCHHHHHHHhh
Q 000565 437 WPDAPEIQRSAD--LYEDLIRCCVADAMSEVRSTARMCYRMFAKTW--PERSRRLFSSFDPAIQRIINE 501 (1418)
Q Consensus 437 ~~~~~~l~~~~~--~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~--p~~a~~ll~~Ld~~~qk~L~~ 501 (1418)
-+......+++. .-.+++..++.|+.....-.|-..||.+...- |+....+|..=.+..-+.+..
T Consensus 243 r~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~ 311 (342)
T KOG1566|consen 243 RSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHD 311 (342)
T ss_pred CCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHH
Confidence 444434444443 34567778999999999999999999988764 555666666555666666654
No 294
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.67 E-value=2.9e+02 Score=35.66 Aligned_cols=162 Identities=19% Similarity=0.127 Sum_probs=87.9
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhcccC-h--HhHHHHHHH----HHHhhcccchHHHHHHHHHHHHHHH
Q 000565 2 EEALELARA----KDTKERMAGVERLHQLLEASRKSLT-S--AEVTSLVDC----CLDLLKDNNFKVSQGALQSLASAAV 70 (1418)
Q Consensus 2 e~~l~~l~s----~~Wk~R~~ale~L~~~l~~~~~~~~-~--~~~~~lv~~----l~~~l~DsN~~V~~~al~~l~~l~~ 70 (1418)
+.+++.+.+ +....|..++-.+..++...-.... + .-+..+++. |....++.+.......|.+|+.+-.
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 445555554 2455667777777776653221110 0 001233333 2333444555556666666665521
Q ss_pred HhhhhHHHHHhhhHHHHHHHhCC--CChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhhh-cCChHHHHHHHHHHHHHHh
Q 000565 71 LSGEHFKLHFNALVPAVVERLGD--AKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWT-HRSWRVREEFARTVTSAIG 147 (1418)
Q Consensus 71 ~l~~~~~~~~~~ilp~LleklgD--~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~~-~KnprVr~~~l~~l~~~l~ 147 (1418)
. ..+..+.|.+. |+ ....+|-.|..+|..+.+. .|..+.+.++....+ ..++.||..++..|..+-
T Consensus 476 ~------~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~-~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~- 544 (574)
T smart00638 476 P------SSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKR-DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK- 544 (574)
T ss_pred h------hHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Confidence 1 11122222222 34 3456999999999988764 477777777764433 456789988877664321
Q ss_pred hcCCCcchhhhhhHHHHHHhc-CCCChhHHHHHHHH
Q 000565 148 LFSATELTLQRAILPPILQML-NDPNPGVREAAILC 182 (1418)
Q Consensus 148 ~fg~~~l~l~k~ll~~l~~lL-~D~~~~VR~aA~~~ 182 (1418)
+. -..+..+...+ .+++..|+......
T Consensus 545 ---P~-----~~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 545 ---PS-----VALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred ---CC-----HHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 11 24455555544 58888887765443
No 295
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=47.59 E-value=42 Score=36.02 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHHhh-cCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 130 RSWRVREEFARTVTSAIGL-FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 130 KnprVr~~~l~~l~~~l~~-fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
.......+++.+|-.+++. +|...+--.+.++..++.+|..++..+|..|.++|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456778899998877764 444322112578999999999999999999999998875
No 296
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.02 E-value=2.2e+02 Score=37.17 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHhh--cChhhHHHhhhhhcc-----
Q 000565 1246 VREVALSLINEMLKNQKDVMED-SVEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLV----- 1316 (1418)
Q Consensus 1246 vr~~aL~~L~~l~~~~~~~~~~-~~e~~l~~ll~~~~d~-~~~V~~aA~~al~~i~~~--~~p~~~l~~l~~~l~----- 1316 (1418)
+|.+...++.+-+. -++.. .-..+-..+++.+.|. ..+|+-++..++++++.- +.++..++++..+..
T Consensus 503 iRRRVa~ilg~Wvs---vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl 579 (978)
T KOG1993|consen 503 IRRRVAWILGQWVS---VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL 579 (978)
T ss_pred HHHHHHHHHhhhhh---eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence 77777777776554 22222 2234556677888887 778889999999998854 556666655522222
Q ss_pred ---ccchhhHHHHHHHHHHHHhhcCHHHHHhh---hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh---cccccc
Q 000565 1317 ---TEDEKTLVTCINCLTKLVGRLSQEELMAQ---LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK---AFLPYL 1387 (1418)
Q Consensus 1317 ---s~~~~~~~~alk~l~~lv~~~~~~~l~~~---L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~---~~~p~l 1387 (1418)
-....+++..+.+|+.++++.+ +.+.+. +-.++|-|-+.-. .++-.|-+-..+|-.+-..+|. .++|++
T Consensus 580 l~~~~e~Dtk~~VL~~ls~lI~r~~-e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 580 LKAVEECDTKTSVLNLLSTLIERVS-EHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 1344578888999999998887 444443 3445555554433 6777898888999999999993 567765
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=2.8e+02 Score=39.80 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=107.8
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHhcccccc
Q 000565 1188 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVME 1266 (1418)
Q Consensus 1188 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~-~vr~~aL~~L~~l~~~~~~~~~ 1266 (1418)
.-+++++....+ +--|..-...|.-+.+..+...-.+|+..-+..++....|++. .|++.+|..+..++..-+.-+-
T Consensus 918 q~~fdklas~~d--~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~ 995 (2067)
T KOG1822|consen 918 QNSFDKLASARD--PITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR 995 (2067)
T ss_pred HHHHHHHHhcCC--cHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh
Confidence 334555555543 3455554444444445544444446777766678888888755 7999999999999998888888
Q ss_pred ccHHHHHHHHHHHh---cCCcHHHHHHHHHHHH------HHHhhcChhh---------------HHHhhhhhccc-cchh
Q 000565 1267 DSVEIVIEKLLHVT---KDAVPKVSNEAEHCLT------VVLSQYDPFR---------------CLSVIVPLLVT-EDEK 1321 (1418)
Q Consensus 1267 ~~~e~~l~~ll~~~---~d~~~~V~~aA~~al~------~i~~~~~p~~---------------~l~~l~~~l~s-~~~~ 1321 (1418)
-|++.++.-++.++ .+.+.+|...-..|.. ++.+...|+- |+-. +-++.+ .+.-
T Consensus 996 ~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~-~allls~~d~l 1074 (2067)
T KOG1822|consen 996 VLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAA-CALLLSHSDPL 1074 (2067)
T ss_pred hhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHH-HHHhcCCCccc
Confidence 88998887777655 3566778877777777 7776666641 1111 111122 2333
Q ss_pred hHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000565 1322 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1371 (1418)
Q Consensus 1322 ~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~ 1371 (1418)
.-..+++|+..+--.-++ . -++..+++.+..-+.-+---.|++++-|
T Consensus 1075 nqa~ai~clqqlhlFapr-~--~n~~~lV~~L~~~l~s~~~i~r~~~~~c 1121 (2067)
T KOG1822|consen 1075 NQAAAIKCLQQLHLFAPR-H--VNLDSLVLQLCSLLSSSYLILRRASFSC 1121 (2067)
T ss_pred hHHHHHHHHHHHHhhcch-h--ccHHHHHHHHHHHhcchhhhhhhhHHhh
Confidence 456778888766544443 2 2456666666653333333344444444
No 298
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=45.76 E-value=2.9e+02 Score=30.82 Aligned_cols=116 Identities=9% Similarity=0.041 Sum_probs=53.5
Q ss_pred hhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHhChhHHHHHHhhhh
Q 000565 49 LLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAK--QPVRDAARRLLLTLMEVSSPTIIVERAGSYA 126 (1418)
Q Consensus 49 ~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k--~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~ 126 (1418)
.+.|.+-.+...|++|+..++......+..-+..++..+-..-++.. ..+-+.+...+..+.+.. .......
T Consensus 86 ~~~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~------~~~~s~~ 159 (219)
T PF14677_consen 86 EVEDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQREL------ENFLSSE 159 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHH------HHHHHS-
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHH------hhccccc
Confidence 34788889999999999999877766666667777776544433322 245555555555554431 1111101
Q ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCC
Q 000565 127 WTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP 171 (1418)
Q Consensus 127 ~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~ 171 (1418)
-..-+.|.-...++++..+.....+..-.+ .+++.++.+...+.
T Consensus 160 ~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~-~q~~~W~~~~ck~~ 203 (219)
T PF14677_consen 160 EEDFNSKEAVLLVNILSQLSDHLDPSSDQF-TQMLSWTLKFCKEN 203 (219)
T ss_dssp -SS--SHHHHHHHHHHHHHTTSS-SSSSHH-HHHHHHHHHHHHS-
T ss_pred cccccchhHHHHHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHhc
Confidence 122234444444555544444433333333 35555555555443
No 299
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=45.76 E-value=78 Score=43.56 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCC-hhhHHHHHHHHHHHhhCC
Q 000565 809 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP-FESYMERILPHVFSRLID 887 (1418)
Q Consensus 809 ~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~-~~~~l~~ll~~l~~klgD 887 (1418)
.-|-..|.++|+.+. .|+++.+.+-.-++.+|......+|++++...... +..| .||.-.+-++||
T Consensus 488 ~lgr~AL~nLL~~N~-----------dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~--~LL~L~Lfklg~ 554 (1120)
T PF14228_consen 488 SLGRRALKNLLEHNP-----------DLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW--ELLNLVLFKLGD 554 (1120)
T ss_pred HHHHHHHHHHHHhhH-----------HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH--HhHHHHHHhhcC
Confidence 346677888888632 27788888888889999999999999998765542 4444 688888889999
Q ss_pred CchhhHHHHHHHHHHHHh
Q 000565 888 PKELVRQPCSTTLDIVSK 905 (1418)
Q Consensus 888 ~k~svr~~a~~~L~~~~~ 905 (1418)
.+..||.+|..+|..+-.
T Consensus 555 ~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 555 ESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 300
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.56 E-value=8.7e+02 Score=32.20 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhC----CC-ChHHHHHHHHHHHHHHHH------hChhHHHHHHhhhhh
Q 000565 59 QGALQSLASAAVLSGEHFKLHFNALVPAVVERLG----DA-KQPVRDAARRLLLTLMEV------SSPTIIVERAGSYAW 127 (1418)
Q Consensus 59 ~~al~~l~~l~~~l~~~~~~~~~~ilp~Lleklg----D~-k~~Vr~~a~~~L~~l~e~------~~p~~v~e~ll~~~~ 127 (1418)
...++++...+.+-.+.|++++..++.+.-..|. |. -+....+|.+.|..+++. +..+.++..+.+ ..
T Consensus 265 a~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e-~V 343 (960)
T KOG1992|consen 265 AQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICE-KV 343 (960)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHH-hh
Confidence 4568888888888888899888877755433332 32 234556677777777653 122223333322 11
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCChhH-HHHHHHHHHHHHHhcChhH
Q 000565 128 THRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGV-REAAILCIEEMYTYAGPQF 194 (1418)
Q Consensus 128 ~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~~V-R~aA~~~L~~l~~~~G~~l 194 (1418)
.-.|--.|++-.+.+ .+..+..+-.-|+-++.+. |.+|+.++..+.++.-..+
T Consensus 344 vlpN~~lR~eDeElF--------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v 397 (960)
T KOG1992|consen 344 VLPNLILREEDEELF--------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV 397 (960)
T ss_pred cccccccchhhHHHh--------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh
Confidence 122222222222111 0235666777887777765 7788999999888774433
No 301
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=44.42 E-value=2.1e+02 Score=30.19 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh--hHHHhhhhhccccch-h--hH
Q 000565 1249 VALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDE-K--TL 1323 (1418)
Q Consensus 1249 ~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~--~~l~~l~~~l~s~~~-~--~~ 1323 (1418)
.+..+|.++++....--.+-++.++..++-....+. ..-.+|+..|+..++.. .+...|..++..=.+ | +-
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~----~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a 112 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPS----SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVA 112 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS------HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 678888888875433333334444444444444422 23458888888775443 244444444431111 1 11
Q ss_pred HHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000565 1324 VTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1373 (1418)
Q Consensus 1324 ~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv 1373 (1418)
..-++.+-=|+ +.+ ..+. ..++-.|.|+|-.++.++|+.||.-+.
T Consensus 113 ~~ll~Al~PLi-~~s-~~lr---d~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 113 IGLLRALLPLI-KFS-PSLR---DSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHH-TT--HHHH---HHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcC-HHHH---HHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 12223333333 233 2332 455679999999999999999998754
No 302
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.19 E-value=5.5e+02 Score=29.51 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHhhCCCc-----hhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhh
Q 000565 870 FESYMERILPHVFSRLIDPK-----ELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA 944 (1418)
Q Consensus 870 ~~~~l~~ll~~l~~klgD~k-----~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~ 944 (1418)
+--.+-.+||.++..+.+.. +.++ .+.+.|-.+.+..+.+.+-..+..|. . +..|.+.+.+..+...+.++
T Consensus 105 ll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~il~~ya-~-~~fr~~~dfl~~v~~~l~~~- 180 (262)
T PF14225_consen 105 LLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLARILSSYA-K-GRFRDKDDFLSQVVSYLREA- 180 (262)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHHHHHHHH-h-cCCCCHHHHHHHHHHHHHHH-
Confidence 44455567788888886555 3344 44456666666655555333333332 1 34488888887777766653
Q ss_pred cCCCCCCCchhHHHHHHHHccccccCCHHHHHHHHHHHHHHhccCChHHHHHHHhhCCHHHHHHHHHHHh
Q 000565 945 MNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 1014 (1418)
Q Consensus 945 ~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 1014 (1418)
.-|. .-...+..++.++..+-+.+|......|..++.+++-+ ....++--..+.+.|+
T Consensus 181 f~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 181 FFPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQ 238 (262)
T ss_pred hCch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhC
Confidence 1111 11234445666666677899999999999999887554 1133334444555555
No 303
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.93 E-value=1.4e+02 Score=28.80 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhc
Q 000565 807 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPS 865 (1418)
Q Consensus 807 ~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~ 865 (1418)
-|.-||..+..-+..+--...++. +-..++..|..||+.+..-.-..+|+.|..++..
T Consensus 3 IR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~ 60 (98)
T PF14726_consen 3 IRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS 60 (98)
T ss_pred HHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC
Confidence 377788888877776544333332 4467888999999998888888888888887654
No 304
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.79 E-value=1.7e+02 Score=37.80 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh--H
Q 000565 1230 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--C 1307 (1418)
Q Consensus 1230 ~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~--~ 1307 (1418)
+.+..|.++..|.=..|+..+|.++-.|+.+.+..= -.+|-.+++++||+...|...|.-.|..|....|.-+ +
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 334455555566656688899999999998765432 2367788899999999999999988877765533333 3
Q ss_pred HHhhhhhc-c-ccchhhHHHHHHHHHHHHhhcCHHHHHhhhh
Q 000565 1308 LSVIVPLL-V-TEDEKTLVTCINCLTKLVGRLSQEELMAQLP 1347 (1418)
Q Consensus 1308 l~~l~~~l-~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~ 1347 (1418)
+.-|..++ + .-+..+...|+-+|..++=.+..+.|...|-
T Consensus 380 i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi 421 (988)
T KOG2038|consen 380 IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLI 421 (988)
T ss_pred HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHH
Confidence 33333333 2 2244455556666665554454455555443
No 305
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=43.42 E-value=4.8e+02 Score=30.70 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCh-hHH---HHHHhhhhhhcCCh--HHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHH
Q 000565 93 DAKQPVRDAARRLLLTLMEVSSP-TII---VERAGSYAWTHRSW--RVREEFARTVTSAIGLFSATELTLQRAILPPILQ 166 (1418)
Q Consensus 93 D~k~~Vr~~a~~~L~~l~e~~~p-~~v---~e~ll~~~~~~Knp--rVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~ 166 (1418)
|..-++|......+..++..+.. ..+ ++.+- ..++.=|+ +-..+.+.++..++..+..-.... +-+...+-.
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~-~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~-kvmt~lLgt 194 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLD-DWLKEWNISVEDQRELLRAVHKALKDNKSVDESS-KVMTELLGT 194 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHH-HHHHHHHHH
Confidence 33334777777777777654321 111 11111 12332222 334567888888887765432333 344445555
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcC
Q 000565 167 MLNDPNPGVREAAILCIEEMYTYAG 191 (1418)
Q Consensus 167 lL~D~~~~VR~aA~~~L~~l~~~~G 191 (1418)
+-+|.-..-|+.|++|+.+..+...
T Consensus 195 yt~dnas~AredA~rcV~~av~dP~ 219 (378)
T KOG2753|consen 195 YTEDNASEAREDAMRCVVEAVKDPK 219 (378)
T ss_pred hcccchhHHHHHHHHHHHHHHcCCc
Confidence 5566668889999999998876543
No 306
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.10 E-value=6.4e+02 Score=30.62 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=45.5
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHH------HHhhhHHHHHHH-hCC-CChHHHHHHHHHHHHHH
Q 000565 43 VDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL------HFNALVPAVVER-LGD-AKQPVRDAARRLLLTLM 110 (1418)
Q Consensus 43 v~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~------~~~~ilp~Llek-lgD-~k~~Vr~~a~~~L~~l~ 110 (1418)
++.+..-++.....=+..||.+|..+++.+|+.|-. ++++++-.+--| +|+ ..+.|+....+.|..+.
T Consensus 47 v~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWt 122 (594)
T KOG1086|consen 47 VRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWT 122 (594)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhhe
Confidence 445555677777777788888888889888876643 455555555544 555 34557777777776654
No 307
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=42.99 E-value=5.3e+02 Score=31.34 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhh--hHH-----H
Q 000565 296 DKDWSVRIAAMQRVEGLVLGGA--ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLG--DFE-----A 366 (1418)
Q Consensus 296 ~~dW~~R~~AL~~L~~ll~~~~--~~~~~f~~~L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~--~f~-----~ 366 (1418)
.+-|-.|..++..+.+.+-... ..|++....++.=+.-+...+.|.-..+-...+..|..|-..+=+ .|. +
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 5779999999888777663222 345554444555444455566677667777777777766554432 233 4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CccchHHH-HHHHhhhCCCHHHHHHHHHHHHHHHHhCCC
Q 000565 367 CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC--KAVRVLPR-IADCAKNDRNAVLRARCCEYALLVLEHWPD 439 (1418)
Q Consensus 367 ~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~--~~~~llp~-l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~ 439 (1418)
+++.-+++++---+|..+-++-.|.+.+..+.-.. ...+++|. |+..+..+|.|.+-..-...|..++...+.
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgk 559 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGK 559 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCC
Confidence 56778888888888887778877778887766544 34677774 444555567777766444445555555443
No 308
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.51 E-value=3.6e+02 Score=34.41 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=67.1
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc--c------------Ch-------------HhHHHHHHHHHHhhccc
Q 000565 1 MEEALELARAKDTKERMAGVERLHQLLEASRKS--L------------TS-------------AEVTSLVDCCLDLLKDN 53 (1418)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~--~------------~~-------------~~~~~lv~~l~~~l~Ds 53 (1418)
|.++++.+.+.+.+.|.-++-.|..+|++..+. + +. .++..++..+...+++.
T Consensus 212 L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~~ 291 (704)
T KOG2153|consen 212 LKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKDL 291 (704)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457788889999999999999999998874321 1 00 00112222222222332
Q ss_pred ------chHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 000565 54 ------NFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 54 ------N~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
.....+.|+.|++.+.....- ..+...++..++-.+.|....++..+++++..+.+.
T Consensus 292 ~~~~~~~v~l~~vav~c~~~Ll~a~pH--FN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 292 SLRTPQQVSLAQVAVQCACELLEAVPH--FNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHhhhh--ccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 112345566666666543211 245666777777777888778888888888888764
No 309
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.85 E-value=1.3e+02 Score=45.34 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh----hhh---H-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 000565 328 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL----LGD---F-EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLR 399 (1418)
Q Consensus 328 ~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~l----g~~---f-~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~ 399 (1418)
..++++|...+...++.+..-+..++..+...+ |+. | -+..+.+++.+++++-+..-.-+..+..+|..+++
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 446678888888889999999998888876644 432 2 25677788888888887776667778888888888
Q ss_pred hCCccchHHHHHHHh-----------hhCCC---HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHH
Q 000565 400 NCKAVRVLPRIADCA-----------KNDRN---AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEV 465 (1418)
Q Consensus 400 ~~~~~~llp~l~~~l-----------~~~Kn---~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eV 465 (1418)
+.+...++....+.+ ...++ ..++......+..+........+-......+...+...+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 887433333322222 01122 1223322333333333221111111223345556677899999999
Q ss_pred HHHHHHHHHHHHHHchhHHHHHhc
Q 000565 466 RSTARMCYRMFAKTWPERSRRLFS 489 (1418)
Q Consensus 466 R~~Ar~a~~~l~~~~p~~a~~ll~ 489 (1418)
|+.+.+++..+..+.+..+..++.
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~ 1166 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLE 1166 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999988766666553
No 310
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=41.47 E-value=6.1e+02 Score=35.32 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh
Q 000565 1231 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 1301 (1418)
Q Consensus 1231 ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~ 1301 (1418)
|+.++++.+-..+..+.+..+.+|.+++-.....--+|. .+|.-+|-.++|+..+||..|...|+++-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~-~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW-ELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH-HhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 666777777666777888899999998865554323333 4778888899999999999999999988754
No 311
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.35 E-value=2.4e+02 Score=37.07 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=94.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHhhhC
Q 000565 340 DRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA--VRVLPRIADCAKND 417 (1418)
Q Consensus 340 D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~--~~llp~l~~~l~~~ 417 (1418)
.....++.++-..+..+...-+.. +++..|+...-.++ ...++..++..=.+ +.++..|-+.+.
T Consensus 15 s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~------s~~~~~il~~~~~P~~K~~~~~l~~~~~-- 80 (668)
T PF04388_consen 15 SNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTN------SQRALEILVGVQEPHDKHLFDKLNDYFV-- 80 (668)
T ss_pred CCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcC------cHHHHHHHHhcCCccHHHHHHHHHHHHc--
Confidence 344445555544444444333222 35666665544443 23344444433334 678888888773
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCCHHHHH
Q 000565 418 RNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQR 497 (1418)
Q Consensus 418 Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk 497 (1418)
.+.-|..+..+|..+++..+...-.-...+.+..+++++..|.+.-|=..|.-++.+|.=++|.....+|.+|=..+-+
T Consensus 81 -~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 81 -KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred -CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 5678999999999999987764111112356778888899999999999999999999999988777766655555555
Q ss_pred HH
Q 000565 498 II 499 (1418)
Q Consensus 498 ~L 499 (1418)
.+
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 55
No 312
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.05 E-value=2.6e+02 Score=39.31 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHh----------CCCChHHHHHHHHHHHHHHHHhChh---HHHHHH
Q 000565 56 KVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL----------GDAKQPVRDAARRLLLTLMEVSSPT---IIVERA 122 (1418)
Q Consensus 56 ~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llekl----------gD~k~~Vr~~a~~~L~~l~e~~~p~---~v~e~l 122 (1418)
.+....+..++..+...=..+..-....+|-+..-. +|.....+.++..-..+.....++. +++..+
T Consensus 1452 ~~~~~i~~~~~ts~~f~f~~~~~~~~kyl~~~~~~~~~~~~~~~~y~~~d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l 1531 (1710)
T KOG1851|consen 1452 PLLLTILKTLGTSFPFWFSTLVKLLPKYLPDLIADDLYPCLGENTYRDVDLAKNSALLCHSLMSLSWIGHHLQPEFLRDL 1531 (1710)
T ss_pred hHHHHHHHHHhhhhhhhHHHHHhcchhhhhhhhcccccccccccccccchHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHH--hhcCCCcchhhhhhHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 123 GSYAWTHRSWRVREEFARTVTSAI--GLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 123 l~~~~~~KnprVr~~~l~~l~~~l--~~fg~~~l~l~k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
....+.+-+|+||..+++++...+ +.|+...... +.+-..+..+|.|.+.+||+.|..+|.-+..
T Consensus 1532 ~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r-~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1532 KMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRR-DDIRKLLESLLNDDQIEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHcchHHHHHHHHHHHHHHHHh
No 313
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.36 E-value=2.6e+02 Score=34.65 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHH--hChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCc--chhhhhhHHHHHHhcCC
Q 000565 95 KQPVRDAARRLLLTLMEV--SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE--LTLQRAILPPILQMLND 170 (1418)
Q Consensus 95 k~~Vr~~a~~~L~~l~e~--~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~--l~l~k~ll~~l~~lL~D 170 (1418)
...+|+....||..+... +.+..+++-++. .+.--.-..|.-+..-|...|....... -.+.+.+-..+..+|.+
T Consensus 33 p~~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~-l~~~~dk~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~ 111 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNKNLIVAEDLLELFFP-LLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQ 111 (616)
T ss_pred CHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhC
Confidence 445789999999999873 677777777765 3332223346666666666666443322 23434556677899999
Q ss_pred CChhHHHHHHHHHHHHHHh
Q 000565 171 PNPGVREAAILCIEEMYTY 189 (1418)
Q Consensus 171 ~~~~VR~aA~~~L~~l~~~ 189 (1418)
+++.--.-|..++++||+.
T Consensus 112 ~d~~~ak~a~~~~~eL~kr 130 (616)
T KOG2229|consen 112 SDSTAAKMALDTMIELYKR 130 (616)
T ss_pred CCchhHHHHHHHHHHHHHh
Confidence 9998777788888888863
No 314
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=39.89 E-value=4.9e+02 Score=30.69 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHHHHHhhhhcCCCCCCCchhHHHHHHHHccccccCCHHHHHHHHHHHHHHhccCChHHHHH-HHhhCCH
Q 000565 925 SPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLN-FILSLSV 1003 (1418)
Q Consensus 925 ~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~~~~~~~~~-~~~~l~~ 1003 (1418)
+-+.+-+++..+...+-.+. ..+ ...+-...-+.+.+.|.-.+-|..|..|++... .+|..|.= ++..||+
T Consensus 160 ~vedqrel~r~v~~al~~~k--~~~----~s~kvmt~lLgtyt~dnas~AredA~rcV~~av--~dP~~F~fD~Ll~L~p 231 (378)
T KOG2753|consen 160 SVEDQRELLRAVHKALKDNK--SVD----ESSKVMTELLGTYTEDNASEAREDAMRCVVEAV--KDPKIFLFDHLLTLPP 231 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcc--hhh----hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--cCCceeccchhccCch
Confidence 45778888888887776541 111 111222222333345555788999999998844 56775543 3788887
Q ss_pred HH---HHHHHHHHhhhcchhH
Q 000565 1004 EE---QNSLRRALKQYTPRIE 1021 (1418)
Q Consensus 1004 ~~---~~~l~~~l~~~~~~~~ 1021 (1418)
-. ++.+..+|+-|..+..
T Consensus 232 V~qLE~d~i~qLL~IF~s~~L 252 (378)
T KOG2753|consen 232 VKQLEGDLIHQLLKIFVSGKL 252 (378)
T ss_pred HHHhccchHHHHHHHHHhcch
Confidence 53 3445566665544433
No 315
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.41 E-value=7.2e+02 Score=29.52 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=57.4
Q ss_pred HhhcccchHHHHHHHHHHHHHHH-Hhh---hhHHHHHh---hhHHHHHHH-hCCCC---------hHHHHHHHHHHHHHH
Q 000565 48 DLLKDNNFKVSQGALQSLASAAV-LSG---EHFKLHFN---ALVPAVVER-LGDAK---------QPVRDAARRLLLTLM 110 (1418)
Q Consensus 48 ~~l~DsN~~V~~~al~~l~~l~~-~l~---~~~~~~~~---~ilp~Llek-lgD~k---------~~Vr~~a~~~L~~l~ 110 (1418)
+.++.....+...+|..+.+++. .-| ..+-.++. ..+|-++.. -.+.. ..||...+..++.+.
T Consensus 63 r~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl 142 (330)
T PF11707_consen 63 RSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFL 142 (330)
T ss_pred HHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHH
Confidence 56777778888899999999986 322 22222222 344555422 11111 279999999999999
Q ss_pred HHhChhHH---------HHHHhhhhhhcCChHHHHHHHHHHHH
Q 000565 111 EVSSPTII---------VERAGSYAWTHRSWRVREEFARTVTS 144 (1418)
Q Consensus 111 e~~~p~~v---------~e~ll~~~~~~KnprVr~~~l~~l~~ 144 (1418)
+..++... +..+++ ++....+.+...+++.|..
T Consensus 143 ~~~~~~~~~~lL~~~~~~~~l~k-~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 143 SSGDPELKRDLLSQKKLMSALFK-GLRKDPPETVILILETLKD 184 (330)
T ss_pred ccCCHHHHHHHHHcCchHHHHHh-cccCCCHHHHHHHHHHHHH
Confidence 87644322 222333 4555556666667766664
No 316
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=38.94 E-value=1.9e+02 Score=30.47 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=71.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-----CCccchHHHHHHH
Q 000565 339 SDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRN-----CKAVRVLPRIADC 413 (1418)
Q Consensus 339 ~D~rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~-----~~~~~llp~l~~~ 413 (1418)
.+.|+. +..++..+-+..+..|...+..++..++..-.....+..-.+..++--+.-. ...+.+++.+...
T Consensus 19 ~~~r~~----a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 19 EEVRSH----ALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred HhHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 345554 5555555557777778878888888777555444433333333333221111 1236788888877
Q ss_pred hh-hCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhc-CCChH-HHHHHHHHH
Q 000565 414 AK-NDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVA-DAMSE-VRSTARMCY 473 (1418)
Q Consensus 414 l~-~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~-Dad~e-VR~~Ar~a~ 473 (1418)
+. ..++..+-..++++|.. ...+..--....+...++++.++. +.|.. +|..|.-++
T Consensus 95 ~~~~~~~~~~~~~~lell~a---Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSA---ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHH---HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 73 25677777766666554 333221111224567778888884 55455 677776554
No 317
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=38.26 E-value=3.9e+02 Score=39.95 Aligned_cols=203 Identities=17% Similarity=0.199 Sum_probs=116.8
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCCh-----hhHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHh
Q 000565 1187 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKN 1260 (1418)
Q Consensus 1187 v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~-----~~~~~~f~~ll~~ll~~l-~d~~~~vr~~aL~~L~~l~~~ 1260 (1418)
+.+++...-.+.+ .+-|..+..-+..++.-... ..-.+.|+.++..++-+. .|.++.+|...+..+-
T Consensus 482 ~~~~~~~~~~~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~----- 554 (2341)
T KOG0891|consen 482 VQQCVDSYLEADD--SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN----- 554 (2341)
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----
Confidence 4555555544432 46777775444444432211 111146888888877644 4667778876654444
Q ss_pred ccccccccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhh--------hccccchhhHHHHHHHH
Q 000565 1261 QKDVMEDSVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVP--------LLVTEDEKTLVTCINCL 1330 (1418)
Q Consensus 1261 ~~~~~~~~~e--~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~--------~l~s~~~~~~~~alk~l 1330 (1418)
.+|.+.+. ..+-.++-++.|..-.++.+++..+..++. .+|..+++-+.- .--+.-..+...|-+++
T Consensus 555 --~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~-~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~ 631 (2341)
T KOG0891|consen 555 --ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSS-YNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLL 631 (2341)
T ss_pred --cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhcccccc-ccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHh
Confidence 23322211 122224556667777777777777665544 344443333321 11122223444444444
Q ss_pred HHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccccccccChHHHHHHHH
Q 000565 1331 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTI 1400 (1418)
Q Consensus 1331 ~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~kll~~ 1400 (1418)
..++.. .+.-+......++-.+..-..+.++-|-+++++|...+|.+.|++++.++..|-+.-.+.|..
T Consensus 632 ~~~i~~-~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~ 700 (2341)
T KOG0891|consen 632 CELIIS-SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQD 700 (2341)
T ss_pred hHHHHH-HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHH
Confidence 444422 223334444555556666778899999999999999999999999988888777777777663
No 318
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.10 E-value=5.4e+02 Score=30.40 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh---HHH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC
Q 000565 327 LKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD---FEA-CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK 402 (1418)
Q Consensus 327 L~~L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~---f~~-~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~ 402 (1418)
|..|+..+...=.+-+..+++++|.+|..||-.=..+ .+. ..+.++..++... +. ..|.+.+..||..++-..+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-~~-p~Vi~~~~a~i~~l~LR~p 362 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-DD-PLVIQEVMAIISILCLRSP 362 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-CC-hHHHHHHHHHHHHHHhcCc
Confidence 4455555544333445578888888888887421111 111 2333444333333 33 3466777888888876554
Q ss_pred c--cchH-----HHHHHHhhhCCC-HHHHHHHHHHHHHHHHhCCCCc--cccccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 000565 403 A--VRVL-----PRIADCAKNDRN-AVLRARCCEYALLVLEHWPDAP--EIQRSADLYEDLIRCCVADAMSEVRSTARMC 472 (1418)
Q Consensus 403 ~--~~ll-----p~l~~~l~~~Kn-~~vR~~~~e~L~~il~~~~~~~--~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a 472 (1418)
- ..++ .....+|+.++. +.+.++.|..+..+........ .+... ++++|. ...-.++.+|..|..+
T Consensus 363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G---iE~Li~-~A~~~h~tce~~akaA 438 (461)
T KOG4199|consen 363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG---IEKLIR-TAKANHETCEAAAKAA 438 (461)
T ss_pred chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc---HHHHHH-HHHhcCccHHHHHHHH
Confidence 2 2232 345667766644 6788888888888776643321 12222 233332 2344578888888888
Q ss_pred HHHH
Q 000565 473 YRMF 476 (1418)
Q Consensus 473 ~~~l 476 (1418)
+.-|
T Consensus 439 LRDL 442 (461)
T KOG4199|consen 439 LRDL 442 (461)
T ss_pred HHhc
Confidence 7654
No 319
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=37.55 E-value=62 Score=32.17 Aligned_cols=76 Identities=13% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCC--CchhHHHHHHHHHHhhhhccCCC----hhhHHHHHHHHHHHhhC-CCchhhHHHHHHHHHHHHh--
Q 000565 835 KVMKLFFQHLDD--PHHKVAQAALSTLADIIPSCRKP----FESYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSK-- 905 (1418)
Q Consensus 835 ~l~~~l~~~l~D--sn~kV~~~~Le~l~~li~~~~~~----~~~~l~~ll~~l~~klg-D~k~svr~~a~~~L~~~~~-- 905 (1418)
.+++.+.+.+.. ++.|+ ..|=.+.+++...+.. |...+...++.++..+. ...+.+|.++.++|+.|.+
T Consensus 32 ~Iv~~i~~~~~~~~~~~kL--~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~ 109 (121)
T smart00582 32 EIVELWEKYIKKAPPPRKL--PLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERG 109 (121)
T ss_pred HHHHHHHHHHHhCCcccee--hhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 455555554444 44555 3444555666544332 33333333333444332 2236799999999999987
Q ss_pred cCCchhh
Q 000565 906 TYSVDSL 912 (1418)
Q Consensus 906 ~~~~~~~ 912 (1418)
.||++.+
T Consensus 110 iF~~~~i 116 (121)
T smart00582 110 IFPPSVL 116 (121)
T ss_pred CCCHHHH
Confidence 8888763
No 320
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=37.42 E-value=3e+02 Score=31.38 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHHHHh---ccc-ccccc--HHHHHHHHHHHhcC--CcHHHHHHHHHH------HHHHHhhcChh---
Q 000565 1243 DSSVREVALSLINEMLKN---QKD-VMEDS--VEIVIEKLLHVTKD--AVPKVSNEAEHC------LTVVLSQYDPF--- 1305 (1418)
Q Consensus 1243 ~~~vr~~aL~~L~~l~~~---~~~-~~~~~--~e~~l~~ll~~~~d--~~~~V~~aA~~a------l~~i~~~~~p~--- 1305 (1418)
++..||.||.-|...-.. ++. -|+.| ...+|..++..|.. +..--.++.... +..+|. ||+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs--hpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS--HPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTTHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc--ChHHHH
Confidence 566788776655543221 111 24555 55688888888863 211112222222 233443 576
Q ss_pred -----hHHHhhhhhcccc--c---hhhHHHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000565 1306 -----RCLSVIVPLLVTE--D---EKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVD 1374 (1418)
Q Consensus 1306 -----~~l~~l~~~l~s~--~---~~~~~~alk~l~~lv~~~~~~~l~~~L-~~l~p~l~~~~~d~~seVRkaAv~~lv~ 1374 (1418)
.+.-+|.|+|.+. . .-.|+.++-.++.+++.-.+|.+.-.+ .+++|-..+.|+.-+---+..|.|.
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfI--- 162 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFI--- 162 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHH---
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHH---
Confidence 2555678888632 2 225889999999999866766554433 6999999999987655555557776
Q ss_pred HHHHhhh
Q 000565 1375 IYIMLGK 1381 (1418)
Q Consensus 1375 ~~~~lg~ 1381 (1418)
+++++.+
T Consensus 163 lqKIL~d 169 (262)
T PF04078_consen 163 LQKILLD 169 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHcc
Confidence 4444443
No 321
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=36.94 E-value=1.5e+02 Score=38.53 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhh----------HHHHHhhhHHHHHHHhCCCChH-HHHHHHHHHHHHHHHhChhHHHHH
Q 000565 53 NNFKVSQGALQSLASAAVLSGEH----------FKLHFNALVPAVVERLGDAKQP-VRDAARRLLLTLMEVSSPTIIVER 121 (1418)
Q Consensus 53 sN~~V~~~al~~l~~l~~~l~~~----------~~~~~~~ilp~LleklgD~k~~-Vr~~a~~~L~~l~e~~~p~~v~e~ 121 (1418)
.+..+...|+-+++.++...-.. .......+++.+.+.|+..... =.+...-+|..+... +...+++.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~~~~i~~ 525 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GHPESIPV 525 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-GGGHHH
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CCchhhHH
Confidence 45667778888888887653222 2334455666666655511000 012333333333322 22234555
Q ss_pred Hhhhhhhc---CChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 000565 122 AGSYAWTH---RSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP--NPGVREAAILCIEE 185 (1418)
Q Consensus 122 ll~~~~~~---KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~--~~~VR~aA~~~L~~ 185 (1418)
+.+ .... ....+|..++..|..+... .+ +.+.+.+.+.+.|. +.+||-+|..+|..
T Consensus 526 l~~-~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~--~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 526 LLP-YIEGKEEVPHFIRVAAIQALRRLAKH-----CP--EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHT-TSTTSS-S-HHHHHHHHHTTTTGGGT------H--HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHh-HhhhccccchHHHHHHHHHHHHHhhc-----Cc--HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 554 2223 3567888777766433221 11 45666677766554 57899999876655
No 322
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.29 E-value=8e+02 Score=29.10 Aligned_cols=56 Identities=7% Similarity=0.104 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 000565 342 RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTM 397 (1418)
Q Consensus 342 rs~V~~~A~~~l~~La~~lg~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~i 397 (1418)
..+|.+.||..|..|+..-...-.+.+..=+..|+......+..++..+..||+.+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 46788999999999988776544455555566677666666666777777776653
No 323
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=2.2e+02 Score=38.17 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCC----CchhHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHHhhC
Q 000565 811 AFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD----PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI 886 (1418)
Q Consensus 811 gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D----sn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~l~~klg 886 (1418)
||+.|+++++..+.+.+ |...-.+++-.|.-.+.= .|.||-+.+|+++. ++..+++=+++.....+-.++-.|-
T Consensus 1745 ~LtAL~Nli~~nPdlas-vfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLAS-VFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL-LATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHhhCcchhh-hccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH-HHhcccHHHHHHHhhhHHHHHHHHH
Q ss_pred CCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCchhHHHHHHHHccc
Q 000565 887 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPL 966 (1418)
Q Consensus 887 D~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l 966 (1418)
++.++.|+.+.++|=++... +.+... -.+.+.|+|+...+.
T Consensus 1823 HS~PS~R~~vL~vLYAL~S~-------~~i~ke-------A~~hg~l~yil~~~c------------------------- 1863 (2235)
T KOG1789|consen 1823 HSQPSMRARVLDVLYALSSN-------GQIGKE-------ALEHGGLMYILSILC------------------------- 1863 (2235)
T ss_pred hcChHHHHHHHHHHHHHhcC-------cHHHHH-------HHhcCchhhhhHHHh-------------------------
Q ss_pred cccCCHHHHHHHHHHHHHHh--ccCChHHHHHHHhhCCHHHHHHHH
Q 000565 967 VHDKNTKLKEAAITCIISVY--THYDSTAVLNFILSLSVEEQNSLR 1010 (1418)
Q Consensus 967 ~~dks~~vR~aA~~~l~aly--~~~~~~~~~~~~~~l~~~~~~~l~ 1010 (1418)
...+.++|.+|..++..|- .+.||+.-...+.=||.-..+.++
T Consensus 1864 -~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~R 1908 (2235)
T KOG1789|consen 1864 -LTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLR 1908 (2235)
T ss_pred -ccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHh
No 324
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=35.13 E-value=2.6e+02 Score=30.36 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-h---HHHhhhhhccc-----cchhhHHHHHHHHHHHHhhcC
Q 000565 1268 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-R---CLSVIVPLLVT-----EDEKTLVTCINCLTKLVGRLS 1338 (1418)
Q Consensus 1268 ~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~-~---~l~~l~~~l~s-----~~~~~~~~alk~l~~lv~~~~ 1338 (1418)
.+.-++.+++.....+-+.||..|-.|+..+.....+. . -...|..++.. -+|..-..++..+..|+ .
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL---~ 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL---D 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh---c
Confidence 45667888888888999999999999999888443231 0 11222232221 13654555555444443 2
Q ss_pred HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000565 1339 QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1379 (1418)
Q Consensus 1339 ~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~l 1379 (1418)
-+ ..-..++-|++-..+.-..++.++|..+|+.+..-.
T Consensus 81 ~~---~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 81 LP---EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred cH---HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 22 234557789999999999999999999999888643
No 325
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=35.07 E-value=6e+02 Score=27.27 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=57.5
Q ss_pred HhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 000565 1309 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1388 (1418)
Q Consensus 1309 ~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~p~l~ 1388 (1418)
+++..++.+++.=.+..|+-++...+.. ...+..+++.+....+|.+--|+|+.-.||-.++....+.+.+|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 7778888877655566666665555544 2235566678888889999999999999999999998888888876
Q ss_pred cc
Q 000565 1389 RL 1390 (1418)
Q Consensus 1389 ~L 1390 (1418)
..
T Consensus 182 ~~ 183 (197)
T cd06561 182 KN 183 (197)
T ss_pred HH
Confidence 44
No 326
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=35.02 E-value=3.7e+02 Score=26.02 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHhhCChh--hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhc
Q 000565 1203 TSKHGALQQLIKASVANDHS--IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 1261 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~--~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~ 1261 (1418)
|-|..||+.|..-+..+-.. ... +=..++..|++|.+......-+.+|.+|..++++.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~ 61 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP 61 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc
Confidence 46888999887666655321 122 45678888999999876667788999999988854
No 327
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=34.69 E-value=7e+02 Score=28.00 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHhh--cChhhHHHhhhhhccccchhhHHHHHH
Q 000565 1252 SLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCIN 1328 (1418)
Q Consensus 1252 ~~L~~l~~~~~~~~~~~~e~~l~~ll~~~-~d~~~~V~~aA~~al~~i~~~--~~p~~~l~~l~~~l~s~~~~~~~~alk 1328 (1418)
..+..+|+..++ +...+++.|...+ ++..+.++.-|-+++..++.+ +......++|.+-+..+.-|....++=
T Consensus 106 ~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~ 181 (234)
T PF12530_consen 106 ASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLC 181 (234)
T ss_pred HHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHH
Confidence 467788887666 5556677777777 888899999999999999944 666778888888884333333332222
Q ss_pred HHHHHHhhc--CHHHHHhhhhhhHHHHHHHhcCCCHH
Q 000565 1329 CLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSAD 1363 (1418)
Q Consensus 1329 ~l~~lv~~~--~~~~l~~~L~~l~p~l~~~~~d~~se 1363 (1418)
-+-.++-+. ..++....-..++..+-+...+.+..
T Consensus 182 ~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 182 SLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 222233222 23444444455555555555556643
No 328
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.63 E-value=73 Score=38.31 Aligned_cols=71 Identities=11% Similarity=0.244 Sum_probs=47.9
Q ss_pred hhhHHHhhhhhccccchh-hHHHHHHHHHHHHhhcCH--HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000565 1304 PFRCLSVIVPLLVTEDEK-TLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1376 (1418)
Q Consensus 1304 p~~~l~~l~~~l~s~~~~-~~~~alk~l~~lv~~~~~--~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~ 1376 (1418)
-..++++|..+|.+++.| ..-.|+.=++..|+.+|. ..++..-.. ..+.+.++|.|++||..|..|.=.+.
T Consensus 364 nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggK--e~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 364 NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGK--ERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchH--HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 346888888888766544 344556667888877753 333332222 46667789999999999999854443
No 329
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.38 E-value=6.5e+02 Score=28.72 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=13.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 000565 2 EEALELARAKDTKERMAGVERLH 24 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~ 24 (1418)
+++++.|...+-..=.++++...
T Consensus 4 ~~il~~l~~~~~~~P~~al~~A~ 26 (249)
T PF06685_consen 4 EEILEQLSYNDGEFPREALEAAI 26 (249)
T ss_pred HHHHHHHHhccccCcHHHHHHHH
Confidence 56777777655455455555543
No 330
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=34.31 E-value=54 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.7
Q ss_pred hhHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000565 159 AILPPILQMLNDPNPGVREAAILCIEEMY 187 (1418)
Q Consensus 159 ~ll~~l~~lL~D~~~~VR~aA~~~L~~l~ 187 (1418)
..++.++.+|.+.+++++..|..+|..|.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788889999999999999999988763
No 331
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.71 E-value=1.3e+03 Score=30.88 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhcccc-----hHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCC-----ChHHHHHHHHHHHH
Q 000565 39 VTSLVDCCLDLLKDNN-----FKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDA-----KQPVRDAARRLLLT 108 (1418)
Q Consensus 39 ~~~lv~~l~~~l~DsN-----~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~-----k~~Vr~~a~~~L~~ 108 (1418)
+..+++.+-+.+.|.. +...+..+-++..+++.++..-.++ +|.+++-+... +...-..+.+.+-.
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~asik~S~~n~ql~~Tss~~igs 535 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSASIKLSAPNPQLLSTSSDLIGS 535 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhccccccccCChhHHHHHHHHHHH
Confidence 4556666667777776 8888899999999998887766665 55555544332 44455556666666
Q ss_pred HHHH--hChhH---HHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcC--CCChhHHHHHHH
Q 000565 109 LMEV--SSPTI---IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLN--DPNPGVREAAIL 181 (1418)
Q Consensus 109 l~e~--~~p~~---v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~--D~~~~VR~aA~~ 181 (1418)
++.- ..|.. .++.++. ++ -|++.-++....+..+-+.....-.++...|+..+-..+. .-.+.+|...+.
T Consensus 536 ~s~~l~e~P~~ln~sl~~L~~-~L--h~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 536 LSNWLGEHPMYLNPSLPLLFQ-GL--HNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHhcCCcccCchHHHHHH-Hh--cCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 6553 23432 3555554 44 2566555555555444443322211111333333333342 334567888888
Q ss_pred HHHHHHHhcC
Q 000565 182 CIEEMYTYAG 191 (1418)
Q Consensus 182 ~L~~l~~~~G 191 (1418)
+++.+....-
T Consensus 613 sIGyvls~~~ 622 (982)
T KOG2022|consen 613 SIGYVLSRLK 622 (982)
T ss_pred HHHHHHHhcc
Confidence 8888876655
No 332
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.49 E-value=1.5e+02 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCChhhHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHhcCCc
Q 000565 834 EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYSV 909 (1418)
Q Consensus 834 ~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~l~~kl-gD~k~svr~~a~~~L~~~~~~~~~ 909 (1418)
..+++.+.+++......--..+|=.+.+++...+..-..+....++.+|... ....+.+|.+..++++.|.+.++.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCCC
Confidence 4566666666655444333466667777777777665555555555555553 466788999999999999876543
No 333
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.85 E-value=3.1e+02 Score=27.23 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=45.2
Q ss_pred HHHhhhHHHHHHHhC-CCChHHHHHHHHHHHHHHHHhCh-hHHHHHHhhhhhhcCChHH-HHHHHHHHHHHHhhc
Q 000565 78 LHFNALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSP-TIIVERAGSYAWTHRSWRV-REEFARTVTSAIGLF 149 (1418)
Q Consensus 78 ~~~~~ilp~Lleklg-D~k~~Vr~~a~~~L~~l~e~~~p-~~v~e~ll~~~~~~KnprV-r~~~l~~l~~~l~~f 149 (1418)
.++..++|.+.+-|. ......+-.+.-.+..++...+. +.+++.+++...++....- ....+.++..+.+..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 367788999999988 55555666666666666665443 3556666653344433332 255666777767655
No 334
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.79 E-value=1.7e+02 Score=35.15 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhcccChHhHH----HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHh-CC
Q 000565 19 GVERLHQLLEASRKSLTSAEVT----SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL-GD 93 (1418)
Q Consensus 19 ale~L~~~l~~~~~~~~~~~~~----~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Llekl-gD 93 (1418)
=+.+|.++++. +.+.+++ .++..+.+.++.++|+|++.|+..+-.= ............|+|.+..-| ..
T Consensus 319 FL~ElEEILe~----iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe--~i~~Li~~n~~~ilPiiFpaLyr~ 392 (457)
T KOG2085|consen 319 FLNELEEILEV----IEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNE--YIRSLISQNAEVILPIVFPALYRN 392 (457)
T ss_pred eHhhHHHHHHh----cCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhH--HHHHHHHhccceeeehhhHHHHHH
Confidence 45556666654 2233433 4556667889999999999999887531 111233444555666555444 22
Q ss_pred C----ChHHHHHHHHHHHHHHHHhChhHHHHHHhh
Q 000565 94 A----KQPVRDAARRLLLTLMEVSSPTIIVERAGS 124 (1418)
Q Consensus 94 ~----k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~ 124 (1418)
+ +..|...+...|..++|. ...+++.+..
T Consensus 393 sk~hWN~~i~~l~~nvlk~f~em--d~~LFeec~~ 425 (457)
T KOG2085|consen 393 SKSHWNQAIHNLILNVLKTFMEM--DPKLFEECLA 425 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 2 334566666777777774 2355666654
No 335
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=32.69 E-value=4.3e+02 Score=32.14 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHhc-----CCcHHHHHHHHHHHHHHH---
Q 000565 1229 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTK-----DAVPKVSNEAEHCLTVVL--- 1299 (1418)
Q Consensus 1229 ~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e-~~l~~ll~~~~-----d~~~~V~~aA~~al~~i~--- 1299 (1418)
.+++.-++.|+...|++....+--.+..++++-.... ++++ -++.+|++++. |..-+++.|+-.|++.++
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 3477788899988888877777777888777544332 2222 35566665543 555678999999998655
Q ss_pred ---hhcChhhHHHhhhhhccc
Q 000565 1300 ---SQYDPFRCLSVIVPLLVT 1317 (1418)
Q Consensus 1300 ---~~~~p~~~l~~l~~~l~s 1317 (1418)
.++-|.-+...+.+.+..
T Consensus 393 ~nka~~~~aGvteaIL~~lk~ 413 (604)
T KOG4500|consen 393 SNKAHFAPAGVTEAILLQLKL 413 (604)
T ss_pred CchhhccccchHHHHHHHHHh
Confidence 223333344455566653
No 336
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=32.60 E-value=3.3e+02 Score=27.02 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHhhhhccCC---ChhhHHHHHHHHHHHhhCC-CchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccC
Q 000565 848 HHKVAQAALSTLADIIPSCRK---PFESYMERILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ 923 (1418)
Q Consensus 848 n~kV~~~~Le~l~~li~~~~~---~~~~~l~~ll~~l~~klgD-~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~ 923 (1418)
|..-+..+|.++..+|..-.. ++..+...|+..|+.-=.. ..+..-+.-.++|-++.-+ .|....+++++.+...
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~-~P~~~~~~L~~~f~~~ 96 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVA-APEKVAPYLTEEFFSG 96 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHH-SGGGHHH-HHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhcC
Confidence 577778999999999987665 8888888777766643220 1222333444445544433 3556678788877553
Q ss_pred -CCchhHHHHHHHHH
Q 000565 924 -RSPKAKLAVIEFAI 937 (1418)
Q Consensus 924 -~~~k~k~~~L~~l~ 937 (1418)
-+-..|..+|..|.
T Consensus 97 ~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 97 DYSLQQRMSILSALS 111 (114)
T ss_dssp ---THHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 57889999998875
No 337
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=32.26 E-value=8.1e+02 Score=27.95 Aligned_cols=153 Identities=15% Similarity=0.247 Sum_probs=90.7
Q ss_pred CCChhhHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHhhcCCCchh-HHHHHHHHHHhhhhccC----CC
Q 000565 802 SSDWCARVSAFNYLRSLLQQG-------PKGIQEVIQNFEKVMKLFFQHLDDPHHK-VAQAALSTLADIIPSCR----KP 869 (1418)
Q Consensus 802 s~~W~~R~~gl~~L~~~l~~~-------~~~~~~v~~~l~~l~~~l~~~l~Dsn~k-V~~~~Le~l~~li~~~~----~~ 869 (1418)
+.-|..=||+-.-|..+++.- ...+. + .++.++.+.|...|...-|+ ++..+-..+..+...+. ..
T Consensus 58 ~~~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls-~-~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~ 135 (255)
T PF10350_consen 58 SCCWRSIKESSLLLGTLVEKIPLPPDSSNSLLS-P-DQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPE 135 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccccCCC-H-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCch
Confidence 456999999999999999421 11122 1 46888999998888876554 77777777776666554 23
Q ss_pred h----hhHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhhc
Q 000565 870 F----ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAM 945 (1418)
Q Consensus 870 ~----~~~l~~ll~~l~~klgD~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~ 945 (1418)
+ +.||..+|-.+-.+ .+..+..+|.+.+...++..++.. +..+.+ .+|.+....|-+.+.
T Consensus 136 l~~LP~~WL~~~l~~i~~~-----------~~~~~~iTRRSAGLP~~i~aiL~a--e~~~~~---~ll~~~~~~Ll~ia~ 199 (255)
T PF10350_consen 136 LSELPEEWLDELLEAIESK-----------GQQKLSITRRSAGLPFLILAILSA--EPSNSR---PLLHRTMKSLLEIAK 199 (255)
T ss_pred HHHhHHHHHHHHHHHHhcc-----------cccccccccccCcHHHHHHHHHhc--CCCcch---hHHHHHHHHHHHHhc
Confidence 3 44555555444443 111123478898888888877775 222222 566665444433322
Q ss_pred CCCCCCCchhHHHHHHHHccccccCCHHHHHHHHHHHHHHhc
Q 000565 946 NSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 987 (1418)
Q Consensus 946 ~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~ 987 (1418)
.+.... ..++...-+=.|.++|-+||+
T Consensus 200 ~~~~~~---------------~~~~~d~~qVHAlNiLr~if~ 226 (255)
T PF10350_consen 200 SPSTQH---------------EDEKSDLPQVHALNILRAIFR 226 (255)
T ss_pred CCcccc---------------cccccchHHHHHHHHHHHHHh
Confidence 221100 011222346688999999995
No 338
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.93 E-value=2.4e+02 Score=30.11 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=12.1
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHH
Q 000565 83 LVPAVVERLGDAKQPVRDAARRLLLTL 109 (1418)
Q Consensus 83 ilp~LleklgD~k~~Vr~~a~~~L~~l 109 (1418)
++..|+.-|...+..+|..+.+.|..+
T Consensus 159 ~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 159 SVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 344444444444555555555555444
No 339
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=31.83 E-value=4.5e+02 Score=27.82 Aligned_cols=119 Identities=11% Similarity=0.225 Sum_probs=79.5
Q ss_pred CHHHHHHHhhcCCCCC---hhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHh
Q 000565 1186 SIPQILHLMCNGNDGS---PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKN 1260 (1418)
Q Consensus 1186 ~v~~ll~~l~~~~~~~---~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d--~~~~vr~~aL~~L~~l~~~ 1260 (1418)
.+.-|++.+.+....+ .+--.-+|..+.++... +...|+......+.-+...+.. .+..|.+.||.+|..|+-+
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~ 90 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLN 90 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhC
Confidence 4666777776665310 12334467777775554 5667865444444445555543 2577888999999999986
Q ss_pred ccccccc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh
Q 000565 1261 QKDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 1305 (1418)
Q Consensus 1261 ~~~~~~~-~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~ 1305 (1418)
-...... .-|..++.|+..+.++..+++..|...++++....+..
T Consensus 91 S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 91 SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 5443222 13678888888888899999999999999888776554
No 340
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=30.88 E-value=3.8e+02 Score=32.37 Aligned_cols=106 Identities=15% Similarity=0.266 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhc----cccccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhhcCh-------hhHHHhhhhhc
Q 000565 1249 VALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLL 1315 (1418)
Q Consensus 1249 ~aL~~L~~l~~~~----~~~~~~~~e~~l~~ll~~~~--d~~~~V~~aA~~al~~i~~~~~p-------~~~l~~l~~~l 1315 (1418)
.+|.+|.++++.. ......+++.++|.|++++- |-...++.-|.+.++.|+..+.. +.+-.++..++
T Consensus 230 ~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfv 309 (373)
T PF14911_consen 230 SVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFV 309 (373)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHH
Confidence 4667777777663 23345568889999998663 54578899999999999977552 24666666666
Q ss_pred cccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000565 1316 VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1359 (1418)
Q Consensus 1316 ~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d 1359 (1418)
..-.---..--.++|.++. ...++-+.. ++|.+.+.+.|
T Consensus 310 qk~l~~~t~~~f~~l~~vA-~l~p~lV~~----Lip~i~q~l~~ 348 (373)
T PF14911_consen 310 QKYLAHYTYQYFQFLEKVA-ELDPQLVIS----LIPTIRQSLKD 348 (373)
T ss_pred HHHhhhhhHHHHHHHHHHH-HhCHHHHHH----HHHHHHHHHHH
Confidence 4211111223368888888 555566644 44555554443
No 341
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=30.68 E-value=1.4e+03 Score=30.18 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=67.1
Q ss_pred hCCCChHHHHHHHHHHHHHHHHh------------ChhHHHHHH---h-h-hhhhcCChHHHHHHHHHHHHHHhhcCCCc
Q 000565 91 LGDAKQPVRDAARRLLLTLMEVS------------SPTIIVERA---G-S-YAWTHRSWRVREEFARTVTSAIGLFSATE 153 (1418)
Q Consensus 91 lgD~k~~Vr~~a~~~L~~l~e~~------------~p~~v~e~l---l-~-~~~~~KnprVr~~~l~~l~~~l~~fg~~~ 153 (1418)
....+-...|.|...+-.+.|.. ++..++-.+ + + ....|.++.|....++.+.+.-.-|...
T Consensus 449 s~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e- 527 (980)
T KOG2021|consen 449 SKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE- 527 (980)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-
Confidence 33444445677888888888752 232222222 2 2 3466888899988888888855544432
Q ss_pred chhhhhhHHHHHH------hcCCCChhHHHHHHHHHHHHHHhcChhHHHhhh
Q 000565 154 LTLQRAILPPILQ------MLNDPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1418)
Q Consensus 154 l~l~k~ll~~l~~------lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~ 199 (1418)
...+|.+.. .|.++|..||-.|--++..+.+.+.+.+.++++
T Consensus 528 ----sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie 575 (980)
T KOG2021|consen 528 ----SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIE 575 (980)
T ss_pred ----hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 245555544 456889999999999888888776666666554
No 342
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=3.3e+02 Score=31.78 Aligned_cols=106 Identities=27% Similarity=0.258 Sum_probs=70.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
.++++-+.+.+-..|..|++.+..+.......+ ..+-...++.+++.++|+.. .+.|..++..++..- ..-+..+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~-~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSL-SKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhh-ccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHH
Confidence 467788888999999999999988765522222 12234667778888888877 667777777776441 12233444
Q ss_pred hhHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLME 111 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vr~~a~~~L~~l~e 111 (1418)
.++..++.++-|....+-+.+..+|..+..
T Consensus 82 ~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 82 DLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 477778888888765555555555555554
No 343
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.46 E-value=1.2e+03 Score=30.99 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH---Hhhhc--cccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000565 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPL---STQLS--DRRSSIVKQACHLLCFLSKELLGDFEACAE 369 (1418)
Q Consensus 295 ~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L---~~~l~--D~rs~V~~~A~~~l~~La~~lg~~f~~~~~ 369 (1418)
+..|--.|+++.+.++-++..-...-+.|.+.+..+...+ .+.+. |.|.. .+.+++.|....+....|++.
T Consensus 537 d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~----VL~~ls~lI~r~~e~I~P~~~ 612 (978)
T KOG1993|consen 537 DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTS----VLNLLSTLIERVSEHIAPYAS 612 (978)
T ss_pred ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHHHhhhHHHH
Confidence 3458889999999999888644333345666555554433 34443 55555 567777787888777777777
Q ss_pred HHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHh
Q 000565 370 MFIPVLFKLVVI--TVLVIAESSDNCIKTMLRNCKA------VRVLPRIADCA 414 (1418)
Q Consensus 370 ~llp~Ll~~~~~--~~~vi~~sa~~al~~i~~~~~~------~~llp~l~~~l 414 (1418)
.++..|-.+... +....|-+...++..++...+. +.++|.|.-++
T Consensus 613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST 665 (978)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc
Confidence 666665555443 3457888888899999988875 45667766554
No 344
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.32 E-value=7.4e+02 Score=30.94 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=24.7
Q ss_pred HHHHHHHhhhcccChHhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 000565 22 RLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL 71 (1418)
Q Consensus 22 ~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~ 71 (1418)
+|..++...-..+++.--..++..|+ +|.+.|.-+.+.-|++|..+...
T Consensus 20 el~dLL~~~~~~lp~~Lr~~i~~~Li-LLrNk~~i~~~~LL~lff~l~~~ 68 (616)
T KOG2229|consen 20 ELKDLLRTNHTVLPPELREKIVKALI-LLRNKNLIVAEDLLELFFPLLRC 68 (616)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHH-HHhccCcCCHHHHHHHHHHHHhc
Confidence 44555554333333222234444433 45666666666666666666533
No 345
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=29.27 E-value=1e+02 Score=33.43 Aligned_cols=76 Identities=26% Similarity=0.249 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000565 1272 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1351 (1418)
Q Consensus 1272 ~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p 1351 (1418)
.|++++....-....-+..+-..+..+.. ++|..++..|.+-..+ ..++..|++.| +.++.+++...||.++-
T Consensus 46 aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~--~~VR~yAv~~L----~~~~d~~l~~yLpQLVQ 118 (184)
T PF00613_consen 46 ALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPD--PFVRQYAVRRL----ESLSDEELLFYLPQLVQ 118 (184)
T ss_dssp GHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT-----HHHHHHHHHHH----CTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccH--HHHHHHHHHHH----HHcCchHHHHHHHHHHH
Confidence 56688887765555555667777777766 6889999888877654 55677777754 56788888777755555
Q ss_pred HHH
Q 000565 1352 ALF 1354 (1418)
Q Consensus 1352 ~l~ 1354 (1418)
+|.
T Consensus 119 aLr 121 (184)
T PF00613_consen 119 ALR 121 (184)
T ss_dssp HGG
T ss_pred Hhe
Confidence 553
No 346
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=28.80 E-value=5.1e+02 Score=26.10 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=60.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhHHHHHhhh---
Q 000565 9 RAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDN--NFKVSQGALQSLASAAVLSGEHFKLHFNAL--- 83 (1418)
Q Consensus 9 ~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~Ds--N~~V~~~al~~l~~l~~~l~~~~~~~~~~i--- 83 (1418)
.++.|.---..+.+|...-. +..++..+++.|-+.+.|. ||+.+.++|..|..++..-.+.+-..+..-
T Consensus 11 s~d~wGp~~~~m~eIa~~t~------~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~ 84 (123)
T cd03571 11 SNDPWGPSGTLMAEIARATY------NYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYI 84 (123)
T ss_pred CCCCCCCCHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHH
Confidence 34557777777777765532 2456778888888888776 999999999999999876444333322222
Q ss_pred HHHHHHH-hCC-----CChHHHHHHHHHHHHHH
Q 000565 84 VPAVVER-LGD-----AKQPVRDAARRLLLTLM 110 (1418)
Q Consensus 84 lp~Llek-lgD-----~k~~Vr~~a~~~L~~l~ 110 (1418)
+-.|-+- ..| .-..||++|.+.+..+.
T Consensus 85 i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 85 IRTLKDFQYIDENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred HHhhccceeeCCCCCchhHHHHHHHHHHHHHhC
Confidence 2222110 122 22468888888776654
No 347
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=28.56 E-value=2.1e+02 Score=30.67 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000565 1272 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1351 (1418)
Q Consensus 1272 ~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p 1351 (1418)
.|++++.+..=....-+..+...+..+ .-++|..++..|.+-..+ ..++.-|++.|. ..+.++|...|+.++-
T Consensus 40 aL~~~l~sv~w~~~~~v~e~~~lL~~W-~~i~~~~aLeLL~~~f~d--~~VR~yAV~~L~----~~sd~eL~~yL~QLVQ 112 (171)
T cd00872 40 ALPKLLLSVKWNKRDDVAQMYQLLKRW-PKLKPEQALELLDCNFPD--EHVREFAVRCLE----KLSDDELLQYLLQLVQ 112 (171)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHCCCcCCC--HHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 578888877655444455555666665 346888999888887753 557888888765 5677999888877776
Q ss_pred HHH
Q 000565 1352 ALF 1354 (1418)
Q Consensus 1352 ~l~ 1354 (1418)
+|.
T Consensus 113 aLK 115 (171)
T cd00872 113 VLK 115 (171)
T ss_pred HHH
Confidence 666
No 348
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.48 E-value=2.1e+02 Score=27.24 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCCCh--hHHHHHHHHHHHH
Q 000565 129 HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNP--GVREAAILCIEEM 186 (1418)
Q Consensus 129 ~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~~~--~VR~aA~~~L~~l 186 (1418)
+..|.+|+.+...|..++..|+...-.++..++..+.+.|.|++. .++-.|+..|.+|
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 347999999999999999999987655545688888888886654 5577777777766
No 349
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=28.43 E-value=7e+02 Score=26.04 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.7
Q ss_pred hhhHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000565 158 RAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1418)
Q Consensus 158 k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~ 188 (1418)
+.+=|.+-..|.-+|..||..|..++...|-
T Consensus 118 rl~~PiL~r~L~~~n~~Vr~na~~l~~~aFp 148 (152)
T PF12422_consen 118 RLYEPILWRALQAANAKVRSNAAALFLDAFP 148 (152)
T ss_pred HHHHHHHHHHHcCCCcchhccHHHHHHHHcC
Confidence 5566778889999999999999999998774
No 350
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=28.31 E-value=1.7e+03 Score=31.78 Aligned_cols=188 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCC-ChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc---
Q 000565 1189 QILHLMCNGNDG-SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV--- 1264 (1418)
Q Consensus 1189 ~ll~~l~~~~~~-~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~--- 1264 (1418)
.+|.++...++. +.+.|+.|-++|.+++.......-..--.++|.+|-.+. .=|.++...++.-+..
T Consensus 238 pLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr---------aYC~~~~~~lqar~~~~ap 308 (2195)
T KOG2122|consen 238 PLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR---------AYCETCWTWLQARGPAIAP 308 (2195)
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCCCCC
Q ss_pred --ccccHHHHHHHHHHHhcCCcHHHHHHHHHHH--HHHHhhcChh------------------hHHHhhhhhc-cccchh
Q 000565 1265 --MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCL--TVVLSQYDPF------------------RCLSVIVPLL-VTEDEK 1321 (1418)
Q Consensus 1265 --~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al--~~i~~~~~p~------------------~~l~~l~~~l-~s~~~~ 1321 (1418)
.++-+...+..|+.+-=| ++-|+++.+.- .+|+..++.+ .....|+.+- -....+
T Consensus 309 a~~~H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NK 386 (2195)
T KOG2122|consen 309 ASDEHQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANK 386 (2195)
T ss_pred cccchhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccch
Q ss_pred hHHHHH-HHHHHHHhhc--CHHHHHhhhhhhHHHHHHHhcCCCHHHHHH-----HHHHHHHHHHHhh-h-ccccccccc
Q 000565 1322 TLVTCI-NCLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSADVRKT-----VVFCLVDIYIMLG-K-AFLPYLERL 1390 (1418)
Q Consensus 1322 ~~~~al-k~l~~lv~~~--~~~~l~~~L~~l~p~l~~~~~d~~seVRka-----Av~~lv~~~~~lg-~-~~~p~l~~L 1390 (1418)
..+++. -||..||.++ .+|+|...+..|+=.|. |.+|+-..|. .|.+|+..+.+.- | .++--|..|
T Consensus 387 a~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLS---WRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSAL 462 (2195)
T KOG2122|consen 387 ATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLS---WRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSAL 462 (2195)
T ss_pred hhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcc---ccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHH
No 351
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=3.8e+02 Score=34.46 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=66.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHH---HHhCCCChHHHHHHHHHHHHHHHHhChhHHHHHHhhhhh
Q 000565 51 KDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVV---ERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAW 127 (1418)
Q Consensus 51 ~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~Ll---eklgD~k~~Vr~~a~~~L~~l~e~~~p~~v~e~ll~~~~ 127 (1418)
+-.++.|.++|+..+..++.+.+..++.....++..++ ++++=.+ -.+.=+.++..++-. .|..+.+.+....+
T Consensus 519 ~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~--F~etq~~aiVa~~vT-~p~pcapylcrqf~ 595 (849)
T KOG4346|consen 519 EKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPK--FKETQVDAIVAACVT-QPPPCAPYLCRQFI 595 (849)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccc--hhhhhHHHHHHHHhc-CCCcchhHHHHHhh
Confidence 34699999999999999999988888888777776655 4555443 234444555555533 45556666654222
Q ss_pred h-c--CChHHHHHHHHHHHHHHhhcCC
Q 000565 128 T-H--RSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 128 ~-~--KnprVr~~~l~~l~~~l~~fg~ 151 (1418)
. + -+-|+|.-++.+|..+.+.++.
T Consensus 596 a~n~~YS~rQRiliL~vi~lAA~els~ 622 (849)
T KOG4346|consen 596 APNQGYSIRQRILILSVIHLAADELSA 622 (849)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHhCc
Confidence 2 2 3457777778888888887766
No 352
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.56 E-value=1.9e+02 Score=40.70 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccc-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Q 000565 1222 SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVL 1299 (1418)
Q Consensus 1222 ~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~~d~-~~~V~~aA~~al~~i~ 1299 (1418)
.+|..+...++..+-.++.+....+|..+|.++.+++...|+.|... -+.++. ++--+=|. .......
T Consensus 1166 ~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~--------- 1235 (1514)
T KOG0929|consen 1166 DVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES--------- 1235 (1514)
T ss_pred ccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh---------
Confidence 34554444555566666667788899999999999999999999865 444444 43222221 1111100
Q ss_pred hhcChhhHHHhhhhhccccchh--hHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000565 1300 SQYDPFRCLSVIVPLLVTEDEK--TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1377 (1418)
Q Consensus 1300 ~~~~p~~~l~~l~~~l~s~~~~--~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~ 1377 (1418)
...+|- |-..|+..+-.|+.+.= +.|...|+.++--+..|+...+..+-+..+.||+-+-.
T Consensus 1236 ----------------~~~eW~~tT~~~Al~~~v~lf~~~~-~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~ 1298 (1514)
T KOG0929|consen 1236 ----------------EKDEWLSTTCNHALQALVDLFTQFF-KQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVS 1298 (1514)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHH
Confidence 011132 23334443333333222 56667788888888888889999999999999998888
Q ss_pred Hhhhcc
Q 000565 1378 MLGKAF 1383 (1418)
Q Consensus 1378 ~lg~~~ 1383 (1418)
..|+.+
T Consensus 1299 ~n~~~f 1304 (1514)
T KOG0929|consen 1299 SNGEKF 1304 (1514)
T ss_pred hccccc
Confidence 887543
No 353
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=27.18 E-value=2e+02 Score=31.10 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000565 1272 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1351 (1418)
Q Consensus 1272 ~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p 1351 (1418)
.||++|.+..=....-+..+...+..+. -++|..+|..|.+... +..++.-|++.| +..+.++|...||.++-
T Consensus 45 aL~~~L~sv~W~~~~e~~e~~~ll~~W~-~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~yLpQLVQ 117 (184)
T smart00145 45 ALPKFLLSVNWSDADEVAQALSLLKKWA-PLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLYLLQLVQ 117 (184)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 4678886655444454555566777664 5788899999888775 456777777765 46788999888877777
Q ss_pred HHH
Q 000565 1352 ALF 1354 (1418)
Q Consensus 1352 ~l~ 1354 (1418)
+|.
T Consensus 118 aLr 120 (184)
T smart00145 118 ALK 120 (184)
T ss_pred HHH
Confidence 663
No 354
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=27.16 E-value=1.4e+03 Score=30.15 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcC
Q 000565 1203 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 1282 (1418)
Q Consensus 1203 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d 1282 (1418)
++-..-++.+...+-+.+....+.+++.+...+..-++. -+..-|.+|..-+..++.+.-.|+ +|-.++++-..
T Consensus 25 e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~----~~~~iL~~L~~ca~~lP~K~~~ya--TLvgllN~kn~ 98 (759)
T KOG1104|consen 25 ETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLEN----FKSKILDILNTCAVYLPEKITAYA--TLVGLLNLKNF 98 (759)
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHcccchhHHH--HHHHHHhccch
Confidence 333334444444444334444445566554455444433 555677788887888888888776 55555554322
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHH--hhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000565 1283 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLV--GRLSQEELMAQLPSFLPALFEAFGNQ 1360 (1418)
Q Consensus 1283 ~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv--~~~~~~~l~~~L~~l~p~l~~~~~d~ 1360 (1418)
..+.+++..++..+. ..+.+.+|-.-..-+.+|.-|. .-++++.|...+..++... ....
T Consensus 99 ------~fg~~~v~~~~~~~q---------~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~---~e~~ 160 (759)
T KOG1104|consen 99 ------NFGGEFVEYMIEELQ---------ESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAA---IEEN 160 (759)
T ss_pred ------hhHHHHHHHHHHHHH---------HHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHH---Hhhc
Confidence 334555555544321 4445677877777778888887 6667777766665544333 3455
Q ss_pred CHHHHH
Q 000565 1361 SADVRK 1366 (1418)
Q Consensus 1361 ~seVRk 1366 (1418)
.+.||.
T Consensus 161 ~Pqvr~ 166 (759)
T KOG1104|consen 161 VPQVRR 166 (759)
T ss_pred Ccchhh
Confidence 777765
No 355
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=26.96 E-value=1.3e+02 Score=36.48 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHHhccCCHH
Q 000565 420 AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPA 494 (1418)
Q Consensus 420 ~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~ll~~Ld~~ 494 (1418)
...|..|..||..++..|... +.++.+..+.+.|.+.-...+-+.|.+++.++..+...--.+++.+|+-+|.-
T Consensus 21 ~l~R~~~ik~L~e~~~~~~~~-er~~~i~~i~e~iq~q~l~s~~~~r~~~~~avq~~~~sg~~~~e~~F~vidAf 94 (525)
T KOG3818|consen 21 HLWRSEAIKLLVELALDWKKE-ERKKWINKIIELIQKQKLNSPHEEREAIEAAVQECSSSGTQDAEKYFNVIDAF 94 (525)
T ss_pred HHHHHhHHHHHHHHHhhhHHH-HhhhhHHHHHHHHHhhccCCchhhHHHHHHHHHHhhhcccccHHHHHhhcchh
Confidence 467889999999999999865 55566778888999888889999999999999999988877788887766643
No 356
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=26.78 E-value=9.1e+02 Score=26.83 Aligned_cols=148 Identities=14% Similarity=0.227 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcccccccc-HHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHhhcChhh----------HH
Q 000565 1248 EVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTK--------DAVPKVSNEAEHCLTVVLSQYDPFR----------CL 1308 (1418)
Q Consensus 1248 ~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~~--------d~~~~V~~aA~~al~~i~~~~~p~~----------~l 1308 (1418)
..++.+|..|+...+..|.+| ++.+++.+...+. +....+=....+.+..|+.+ ++.+ ++
T Consensus 6 ~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~-hr~~l~~r~hll~~~l 84 (223)
T PF10441_consen 6 LLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRH-HRFKLSGRFHLLLSVL 84 (223)
T ss_pred HHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHH-hHHHHcCCChHHHHHH
Confidence 357788888888887788888 7777777776653 23345555555666666544 2321 22
Q ss_pred Hhhhhhcc-------ccc----hhh--HHHHHHHHHHHHhh------------------cCHHHHHhhhhhhHHHHHHHh
Q 000565 1309 SVIVPLLV-------TED----EKT--LVTCINCLTKLVGR------------------LSQEELMAQLPSFLPALFEAF 1357 (1418)
Q Consensus 1309 ~~l~~~l~-------s~~----~~~--~~~alk~l~~lv~~------------------~~~~~l~~~L~~l~p~l~~~~ 1357 (1418)
..|...+. .+. +.. -..+-.+|+.+.+. .-+..+..|+|-++-.-+...
T Consensus 85 ~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~ 164 (223)
T PF10441_consen 85 QRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQ 164 (223)
T ss_pred HHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22222222 111 111 22333566666655 013555666655544444443
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHhhh-cccccccccChHHHH
Q 000565 1358 --GNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLR 1396 (1418)
Q Consensus 1358 --~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~~k 1396 (1418)
..-.++||++=.-++-+++.++++ ++.--...|+.+-+.
T Consensus 165 ~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~ 206 (223)
T PF10441_consen 165 LKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRA 206 (223)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHH
Confidence 246899999999998888888886 544344677766643
No 357
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=26.21 E-value=1.9e+02 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHHHHhhhhccCCCh
Q 000565 832 NFEKVMKLFFQHLDDP-HHKVAQAALSTLADIIPSCRKPF 870 (1418)
Q Consensus 832 ~l~~l~~~l~~~l~Ds-n~kV~~~~Le~l~~li~~~~~~~ 870 (1418)
.+..+++.+.+||.|+ |..|+..+|-+|-.++..-.+.+
T Consensus 36 ~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~ 75 (127)
T smart00273 36 SFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV 75 (127)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH
Confidence 5678999999999999 99999999999999997655444
No 358
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.78 E-value=8.4e+02 Score=26.08 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhHHHHH
Q 000565 408 PRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRL 487 (1418)
Q Consensus 408 p~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~a~~l 487 (1418)
+.+..-+ .+.+.-+|+.++..+...+.. . ...+.+.+.+...+.|.+.-||.+.--++..+...+|+.+..+
T Consensus 108 ~~~~~w~-~s~~~~~rR~~~~~~~~~~~~-~------~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWA-KSENEWVRRAAIVLLLRLIKK-E------TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHH-hCCcHHHHHHHHHHHHHHHHh-c------ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5555555 688999999887777665554 1 2345678888889999999999999999999999999998887
Q ss_pred hcc
Q 000565 488 FSS 490 (1418)
Q Consensus 488 l~~ 490 (1418)
+..
T Consensus 180 l~~ 182 (197)
T cd06561 180 LEK 182 (197)
T ss_pred HHH
Confidence 754
No 359
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.69 E-value=2.3e+02 Score=26.52 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=48.4
Q ss_pred hHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 000565 406 VLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCY 473 (1418)
Q Consensus 406 llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~ 473 (1418)
++..+...+.+..+..+|..+.+++..+++..+.. +...++.+..++.....|.+.++=..|-+++
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~--i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGEN--IKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH--HHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 33333333335567899999999999888887653 5566888889999999998888877776665
No 360
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=25.48 E-value=9.3e+02 Score=34.19 Aligned_cols=118 Identities=13% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCCChhhHHHHHH---------HHHHHHhcC-CCchHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhccCCC
Q 000565 800 SPSSDWCARVSAFN---------YLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP 869 (1418)
Q Consensus 800 ~~s~~W~~R~~gl~---------~L~~~l~~~-~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~ 869 (1418)
++=..|++...++. .|..+.++. .+.++.-..+|..+++....-+.-.+..|+-..++-|..|+..+...
T Consensus 821 Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g 900 (2196)
T KOG0368|consen 821 LPYLEWQEHISALANRLPPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGG 900 (2196)
T ss_pred cChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhccc
Confidence 45678888887764 233333332 11223334577888888888888888899999999999999999999
Q ss_pred hhhHHHHHHHHHHHhh------CCCchhhHHHHHHHHHHHHhcCCchhhhHHHHHHhcc
Q 000565 870 FESYMERILPHVFSRL------IDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE 922 (1418)
Q Consensus 870 ~~~~l~~ll~~l~~kl------gD~k~svr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~ 922 (1418)
++.+...++-+|+.+. =+..++..+.+ +..+++.+..+ +..+...+..
T Consensus 901 ~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~---i~~lr~~~~~d--~~kVv~~i~S 954 (2196)
T KOG0368|consen 901 LEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDV---ILRLREENKKD--LKKVVDIILS 954 (2196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHH---HHHHHHhhhhH--HHHHHHHHHc
Confidence 9999999999998763 13334444443 34455666555 3444444433
No 361
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.19 E-value=5.1e+02 Score=34.72 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcCCC-ChhHHHHHHHHH
Q 000565 105 LLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP-NPGVREAAILCI 183 (1418)
Q Consensus 105 ~L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~D~-~~~VR~aA~~~L 183 (1418)
.+..+..+++...+++-|++....++..-.|..+++||.. ..+++.++.++..+ .+++-..|.+.|
T Consensus 149 ~v~~~l~hi~~stlMD~Llkli~~de~~~p~~~Viq~l~d-------------~~li~kll~ll~ps~~~~~qsna~~~L 215 (838)
T KOG2073|consen 149 FVDLFLKHIDISTLMDFLLKLISTDEPESPRTDVIQWLND-------------QELIPKLLELLNPSKDPDVQSNAGQTL 215 (838)
T ss_pred HHHHHHHHcCccHHHHHHHHhccccCCCCchHHHHHHHhh-------------HHHHHHHHHHhCCccccchhHHHHHHH
Confidence 4445555555556677777644445544444899999964 46888888888654 468999999999
Q ss_pred HHHHHhc-----ChhHHHhhh
Q 000565 184 EEMYTYA-----GPQFRDELH 199 (1418)
Q Consensus 184 ~~l~~~~-----G~~l~~~L~ 199 (1418)
+.|.+.. ...|...|.
T Consensus 216 ~~iv~~s~~~~gPn~L~~qL~ 236 (838)
T KOG2073|consen 216 CAIVRLSRNQPGPNPLTKQLE 236 (838)
T ss_pred HHHHhcccccCCCCHHHHhhc
Confidence 9999883 344666665
No 362
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=25.17 E-value=2.7e+02 Score=29.09 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhH
Q 000565 1271 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1350 (1418)
Q Consensus 1271 ~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~ 1350 (1418)
..+|+++....-....-+..+...+..+ ..+.|..+|..|.+-... ..++.-|++.| +..+.+++...||.++
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W-~~~~~~~aL~LL~~~~~~--~~vr~yAv~~L----~~~~~~~l~~ylpQLV 111 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW-APLSPEDALELLSPKYPD--PVVRQYAVRVL----ESASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC-CCCCHHHHHHHcCCcCCC--HHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 4678888777655555555555555544 457888999888886643 55677777765 4677889988887777
Q ss_pred HHHH
Q 000565 1351 PALF 1354 (1418)
Q Consensus 1351 p~l~ 1354 (1418)
-+|.
T Consensus 112 QaLk 115 (152)
T cd00864 112 QALK 115 (152)
T ss_pred HHHh
Confidence 6663
No 363
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.90 E-value=3.6e+02 Score=26.72 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=37.9
Q ss_pred cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCCh
Q 000565 404 VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS 463 (1418)
Q Consensus 404 ~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~ 463 (1418)
.+++|.+.++++..++++.|..+.-.+..+..+.+-.. ..++.+.+.+.+.....+.
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~---~~l~~l~~~i~~~~~~~~~ 61 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD---EVLNALMESILKNWTQETV 61 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhccccchh
Confidence 56789999998657788999888888888888776431 2244455555444444433
No 364
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.80 E-value=8.4e+02 Score=31.00 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHHHHHHHhhCCCchhhHHHHHHHHHHHHh--cCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhhcCCCC
Q 000565 876 RILPHVFSRLIDPKELVRQPCSTTLDIVSK--TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 949 (1418)
Q Consensus 876 ~ll~~l~~klgD~k~svr~~a~~~L~~~~~--~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~ 949 (1418)
.-|..++...+..+++|-.....+|+.+.+ +.+. .+++.+|.-....-+.+-+.++|+-+..++.++.-.+++
T Consensus 285 ~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~v~~-tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dG 359 (652)
T KOG2050|consen 285 KTLDKILAEAPEKKASILRHLKAIITPVAEKGSVDH-TIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDG 359 (652)
T ss_pred ccHHHHHHhChHhHHHHHHHHHHHhHHHhhcchhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCch
Confidence 346667777788888888888888888875 4443 334444443334456799999999998888876555554
No 365
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=24.45 E-value=1e+03 Score=26.52 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHH--HhhcccchHHHHHHHHHHHHHHHHhh
Q 000565 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL--DLLKDNNFKVSQGALQSLASAAVLSG 73 (1418)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~--~~l~DsN~~V~~~al~~l~~l~~~l~ 73 (1418)
.|..+|.+.+-+.|..|++.|..++.......+..++..+.++|- =|+.|. +.+++.-.+-|..++..+.
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDk-pl~Q~~la~~la~l~~~~~ 75 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDK-PLVQEELAEELASLIHSFP 75 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhc
Confidence 478899999999999999999999987543224566778888774 366666 5666666666667665543
No 366
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=24.00 E-value=1.2e+03 Score=30.64 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHhhh---hHHHHH---hhhHHHHHHHhCCCChHHHHHHHHHHHHHHHHh
Q 000565 41 SLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGE---HFKLHF---NALVPAVVERLGDAKQPVRDAARRLLLTLMEVS 113 (1418)
Q Consensus 41 ~lv~~l~~~l~-DsN~~V~~~al~~l~~l~~~l~~---~~~~~~---~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~~ 113 (1418)
.+++.....+. .+|..+.+++.-+|..+...... .+...+ +..+|.|++.|-...+.|...+..+|..|.-..
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 34444333444 46888999888888887655322 222222 356799999997777778888888888887432
Q ss_pred Ch-----hHHHHHHhhhhhh------cCChHHHHHHHHHHHHHHhh--------cCCCcchhhhhhHHHHHHh-cCCCCh
Q 000565 114 SP-----TIIVERAGSYAWT------HRSWRVREEFARTVTSAIGL--------FSATELTLQRAILPPILQM-LNDPNP 173 (1418)
Q Consensus 114 ~p-----~~v~e~ll~~~~~------~KnprVr~~~l~~l~~~l~~--------fg~~~l~l~k~ll~~l~~l-L~D~~~ 173 (1418)
.. ..++.+|+. .+. .-.|.+...+|..|.+++.. |+.+. ++.++.+ ..-..+
T Consensus 598 rnk~ligk~a~~~lv~-~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g-------~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 598 RNKELIGKYAIPDLVR-CLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG-------IPKLRLISKSQHSP 669 (717)
T ss_pred hhhhhhhcchHHHHHH-hCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC-------hHHHHHHhcccCCH
Confidence 11 233444443 111 12367777778777777632 22222 2222222 234455
Q ss_pred hHHHHHHHHHHHHHHhcChhHHHhhhcCCCCHH
Q 000565 174 GVREAAILCIEEMYTYAGPQFRDELHRHNLPNS 206 (1418)
Q Consensus 174 ~VR~aA~~~L~~l~~~~G~~l~~~L~~~~l~~~ 206 (1418)
.+=++|..+|-.|..+ .++...+.+++.+++
T Consensus 670 k~~kaAs~vL~~lW~y--~eLh~~~kk~g~~q~ 700 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQY--KELHFKLKKKGFKQQ 700 (717)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhHhhhhhHHH
Confidence 6667777777776543 344444444444333
No 367
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.85 E-value=3.9e+02 Score=33.59 Aligned_cols=72 Identities=8% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHHHHHHhChhHHHHHHhhhhhhcCChHHHHHHHHHHHHHHhhcCCCcchhhhhhHHHHHHhcC-CCChhHHHHHHHHHH
Q 000565 106 LLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLN-DPNPGVREAAILCIE 184 (1418)
Q Consensus 106 L~~l~e~~~p~~v~e~ll~~~~~~KnprVr~~~l~~l~~~l~~fg~~~l~l~k~ll~~l~~lL~-D~~~~VR~aA~~~L~ 184 (1418)
+..+.+++.-..+++-+++ ...-..+..+.++++||.+ ..+|+.++.+|. ...+++...|.++|+
T Consensus 23 v~~llkHI~~~~ImDlLLk-lIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~ 88 (475)
T PF04499_consen 23 VDNLLKHIDTPAIMDLLLK-LISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLK 88 (475)
T ss_pred HHHHHHhcCCcHHHHHHHH-HHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3344444444445555554 2233337778889999965 367888888885 567789999999999
Q ss_pred HHHHhcC
Q 000565 185 EMYTYAG 191 (1418)
Q Consensus 185 ~l~~~~G 191 (1418)
+|.+...
T Consensus 89 aII~is~ 95 (475)
T PF04499_consen 89 AIIRISR 95 (475)
T ss_pred HHHHHhh
Confidence 9988754
No 368
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.64 E-value=1e+03 Score=30.51 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=76.3
Q ss_pred HHHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHHHHhCCc---c-chHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCC
Q 000565 364 FEACAEM-FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA---V-RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWP 438 (1418)
Q Consensus 364 f~~~~~~-llp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~---~-~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~ 438 (1418)
|..+... +...++....+...+||--+...+..++..++- + ..+.+.-=.+ .|.+..||....+.|..+..+.+
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p 346 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIP 346 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCC
Confidence 3334443 445667778888888998888888888877653 1 1222222234 67789999999999998888876
Q ss_pred CCccccccHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHH
Q 000565 439 DAPEIQRSADLYEDLI-RCCVADAMSEVRSTARMCYRMFAKT 479 (1418)
Q Consensus 439 ~~~~l~~~~~~l~~~l-~~~l~Dad~eVR~~Ar~a~~~l~~~ 479 (1418)
....+...++.+..-| --+..|.|- ||..+.+.+..++.+
T Consensus 347 ~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 347 HTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 5422222333333333 336889999 999999999888765
No 369
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=23.50 E-value=1.8e+02 Score=34.97 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHH--hhhhccCCChhhHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHhc
Q 000565 833 FEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPFESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKT 906 (1418)
Q Consensus 833 l~~l~~~l~~~l~Dsn~kV~~~~Le~l~--~li~~~~~~~~~~l~~ll~~l~~kl-gD~k~svr~~a~~~L~~~~~~ 906 (1418)
...||.-+.+-++.+||+|+--+|.... .+.....+.-+-.++++-|+|..+. ++=+..|.+.+..+|..+++.
T Consensus 339 ~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 339 MVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888899999999999998886654 1233333344467778888888886 477888888888888888864
No 370
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=1.6e+03 Score=31.76 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHH---HHHHHHHHh-c--------------------ccccccc--H-HHH
Q 000565 1221 HSIWTKYFNQILTAVLEVLDDA-DSSVREVAL---SLINEMLKN-Q--------------------KDVMEDS--V-EIV 1272 (1418)
Q Consensus 1221 ~~~~~~~f~~ll~~ll~~l~d~-~~~vr~~aL---~~L~~l~~~-~--------------------~~~~~~~--~-e~~ 1272 (1418)
+..+..++..+++.+......+ |..|--.|+ .++...+++ + ++++..| + ..+
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~l 998 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIML 998 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHH
Confidence 4455567777777777666543 444444442 333333333 1 1222222 2 346
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhh----cChh----hHHHhhhhhccc------cchhh----------HHHHHH
Q 000565 1273 IEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----YDPF----RCLSVIVPLLVT------EDEKT----------LVTCIN 1328 (1418)
Q Consensus 1273 l~~ll~~~~d~~~~V~~aA~~al~~i~~~----~~p~----~~l~~l~~~l~s------~~~~~----------~~~alk 1328 (1418)
+-.|.+++.|+-.+||..|...+-.|... +++. -|..++.|+|.+ ++|.. -...|.
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltis 1078 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTIS 1078 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHH
Confidence 66777899999999999999988766643 3442 288899999972 33421 112223
Q ss_pred HHHHHHhhcCHHHH-----HhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000565 1329 CLTKLVGRLSQEEL-----MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1329 ~l~~lv~~~~~~~l-----~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~ 1375 (1418)
-|.+++...=+.-+ ....-.++-.+.+...|..+++.-+|.+|+=.+
T Consensus 1079 gIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1079 GIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 34444433322221 223446677888999999999999999997654
No 371
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.64 E-value=1.1e+03 Score=30.11 Aligned_cols=103 Identities=15% Similarity=-0.023 Sum_probs=71.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHH--HHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--hhHHHH
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTS--LVDCCLDLLKDNNFKVSQGALQSLASAAVLSG--EHFKLH 79 (1418)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~--lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~--~~~~~~ 79 (1418)
|+.+..+.+-..|..++..|...++..+ ..+-. +++...-.|.|.+..|......++..++.+.+ +.+++.
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP-----~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVP-----DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcch-----HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4556667788889999988888776422 11111 22222235789999999999999999987642 245556
Q ss_pred HhhhHHHHHHHh-CCCChHHHHHHHHHHHHHHHH
Q 000565 80 FNALVPAVVERL-GDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 80 ~~~ilp~Llekl-gD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
+..+-.-++|-+ -|..- ||-.+.+.|..+...
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 666666667665 56555 999999999999875
No 372
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.42 E-value=1.2e+02 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=23.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000565 1348 SFLPALFEAFGNQSADVRKTVVFCLVDI 1375 (1418)
Q Consensus 1348 ~l~p~l~~~~~d~~seVRkaAv~~lv~~ 1375 (1418)
..+|.|.+.+.+.+.++++.|..++-.+
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3678888888899999999999987654
No 373
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=6.3e+02 Score=35.35 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=81.9
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHH-HHHHHhCCc
Q 000565 330 LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD-----FEACAEMFIPVLFKLVVITVLVIAESSDNCI-KTMLRNCKA 403 (1418)
Q Consensus 330 L~~~L~~~l~D~rs~V~~~A~~~l~~La~~lg~~-----f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al-~~i~~~~~~ 403 (1418)
|...|.+...|.|..|..-||+++=.+...-|.+ |+.++-.++-.|+.....++ +.+.-.+-+ +.+-+.+-
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~--~~ewngkeiqkqwtet~~- 1074 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN--VSEWNGKEIQKQWTETSC- 1074 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--hhhhcchhHhhhhhhhhh-
Confidence 4566778889999999999999999998877765 55566666666666544433 222222222 11111110
Q ss_pred cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHchhH
Q 000565 404 VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER 483 (1418)
Q Consensus 404 ~~llp~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~~Ar~a~~~l~~~~p~~ 483 (1418)
-+|.-|.+-. + +++.. +...++ .-..++.+...+++++.|.++++--+|.++|..+..-
T Consensus 1075 -ltisgIaklf-~-----------e~fk~-llnln~---f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s---- 1133 (1610)
T KOG1848|consen 1075 -LTISGIAKLF-S-----------ENFKL-LLNLNG---FLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS---- 1133 (1610)
T ss_pred -hhHHHHHHHH-H-----------HHHHH-HHhccc---HHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH----
Confidence 0011111111 0 11111 111111 1223456778899999999999999999999875432
Q ss_pred HHHHhccCCHHHHHHHhh
Q 000565 484 SRRLFSSFDPAIQRIINE 501 (1418)
Q Consensus 484 a~~ll~~Ld~~~qk~L~~ 501 (1418)
..-+++++...-++++.
T Consensus 1134 -ii~~~~ln~~~~~k~n~ 1150 (1610)
T KOG1848|consen 1134 -IIEFGKLNATFTLKINL 1150 (1610)
T ss_pred -HhhhccccchHHHHhhh
Confidence 11234555554455443
No 374
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=22.39 E-value=2.7e+02 Score=29.71 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000565 1272 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1351 (1418)
Q Consensus 1272 ~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p 1351 (1418)
.||++|....+....-+..+...++.+. -+.|...+..|.+-..+ ..++.-|++.|. ..+.++|...||.++-
T Consensus 40 aLp~~L~s~~~w~~~~~~e~~~LL~~W~-p~~p~~ALeLL~~~f~d--~~VR~yAV~~L~----~~~ddeL~~yLpQLVQ 112 (169)
T cd00869 40 ALPLVLASAPSWDWANLMDVYQLLHQWA-PLRPLIALELLLPKFPD--QEVRAHAVQWLA----RLSNDELLDYLPQLVQ 112 (169)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHhCCC-CCCHHHHHHHcCCcCCC--hHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 5788887665333222333455555554 46888999998887754 457778887755 5677888877766666
Q ss_pred HHH
Q 000565 1352 ALF 1354 (1418)
Q Consensus 1352 ~l~ 1354 (1418)
+|.
T Consensus 113 aLk 115 (169)
T cd00869 113 ALK 115 (169)
T ss_pred HHH
Confidence 555
No 375
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.38 E-value=1.4e+03 Score=27.62 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 000565 37 AEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112 (1418)
Q Consensus 37 ~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vr~~a~~~L~~l~e~ 112 (1418)
.++..+++..+.. .+-.+.|-+.|..+++. |......-+.+-++.+.|....||..|..-|-.+|.-
T Consensus 25 ~~y~~il~~~k~~-----~k~k~lasq~ip~~fk~----fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 25 DDYEGILKAVKGT-----SKEKRLASQFIPRFFKH----FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHhhcc-----hHHHHHHHHHHHHHHhh----CchhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 4455555554432 34445566666665543 3344455566677778888888888888888888764
No 376
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=22.30 E-value=4.9e+02 Score=30.45 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccc-HHHHHHHHHHHhcCCcHHHHHH
Q 000565 1212 LIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPKVSNE 1290 (1418)
Q Consensus 1212 L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~~d~~~~V~~a 1290 (1418)
++.++..+..+....-+..+...+...+.|+ .+..+++.+++......... +..+.+.+..++.| .-
T Consensus 61 vq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~------~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d------~~ 128 (322)
T cd07920 61 IQKLFEHGTEEQRLQLLEKILGHVVRLSLDM------YGCRVIQKLLESISEEQISLLVKELRGHVVELVKD------QN 128 (322)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHcccc------hhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhc------cc
Q ss_pred HHHHHHHHHhhcChhhHHHhhhhhcccc-chhhHHHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000565 1291 AEHCLTVVLSQYDPFRCLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1360 (1418)
Q Consensus 1291 A~~al~~i~~~~~p~~~l~~l~~~l~s~-~~~~~~~alk~l~~lv~~~~~~~l~~~L~~l~p~l~~~~~d~ 1360 (1418)
|...+..+....+|...-.++..+...- ..-....+...+.++++..+++.....+..+++.+..-..|.
T Consensus 129 gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~ 199 (322)
T cd07920 129 GNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQ 199 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC
No 377
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=22.10 E-value=4.4e+02 Score=32.17 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHh
Q 000565 1185 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKN 1260 (1418)
Q Consensus 1185 ~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~-vr~~aL~~L~~l~~~ 1260 (1418)
+.++.++..+-..+-. ...|.++..-|..++...+.+.... .. +..++...+...+. ....++.+|.+|+++
T Consensus 180 ~~lD~Llrmf~aPn~e-t~vRve~~rlLEq~~~aeN~d~va~-~~--~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLE-TSVRVEAARLLEQILVAENRDRVAR-IG--LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred chHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhhhhhHHhh-cc--chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 3455555555444421 2358888877877776655443321 11 22333333443333 334456677777664
No 378
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=21.98 E-value=3.7e+02 Score=31.80 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHhcccccccc-HH-HHHHHHHHHh-------cCCcHHHHHHHHHHH
Q 000565 1227 YFNQILTAVLEVLDDADSS--VREVALSLINEMLKNQKDVMEDS-VE-IVIEKLLHVT-------KDAVPKVSNEAEHCL 1295 (1418)
Q Consensus 1227 ~f~~ll~~ll~~l~d~~~~--vr~~aL~~L~~l~~~~~~~~~~~-~e-~~l~~ll~~~-------~d~~~~V~~aA~~al 1295 (1418)
.|..|+.+|-..++|.... ..-.||.+|.+|+++-..+|-.. -+ +.+..+|.-+ .|....||..|++.+
T Consensus 54 e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~ 133 (336)
T KOG2056|consen 54 EYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELL 133 (336)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHH
Confidence 3777888888888875444 44468999999988655544322 11 2333344332 266778888888877
Q ss_pred HHHH
Q 000565 1296 TVVL 1299 (1418)
Q Consensus 1296 ~~i~ 1299 (1418)
..|=
T Consensus 134 ~LL~ 137 (336)
T KOG2056|consen 134 SLLE 137 (336)
T ss_pred HHhc
Confidence 6543
No 379
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.69 E-value=1.4e+03 Score=29.92 Aligned_cols=170 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHHHH--HhhcCCCchhHHHHHH-HHHHhhhhccCCChhhHHHHHHHHHHHhhCC
Q 000565 812 FNYLRSLLQQGPK-GIQEVIQNFEKVMKLF--FQHLDDPHHKVAQAAL-STLADIIPSCRKPFESYMERILPHVFSRLID 887 (1418)
Q Consensus 812 l~~L~~~l~~~~~-~~~~v~~~l~~l~~~l--~~~l~Dsn~kV~~~~L-e~l~~li~~~~~~~~~~l~~ll~~l~~klgD 887 (1418)
+..+..+.+.+.. .+.++...++..+.-| .+|...++.+++-..| |.|.++...+++.|...+.-+.-.++..--.
T Consensus 471 l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g~~~~~Iv~T~~dy~~D~~~~~~~~f~~fi~e~~~~~v~~Yl~ 550 (667)
T KOG2286|consen 471 LDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAGSVTENIVATLDDYLPDFKELMGEYFVRFIEEASLELVIEYLR 550 (667)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred CchhhHHHHHHHHHHHH-hcCCchhhhHHHHHHhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCchhHHHHHHHHccc
Q 000565 888 PKELVRQPCSTTLDIVS-KTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPL 966 (1418)
Q Consensus 888 ~k~svr~~a~~~L~~~~-~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l 966 (1418)
....=|.-.++++..+. +. .+|..+++...+ --+|+..++ ..|+.+
T Consensus 551 ~l~~kr~~~~~~~~~i~~d~----~~~~~~f~~~~~---------~~~~~~~~~--------------------~~l~el 597 (667)
T KOG2286|consen 551 ALSKKRASIQELIEKIKSDA----ETLYHFFRKYGS---------DVDTLISTI--------------------STLAEL 597 (667)
T ss_pred HHHhhhhhHHHHHHHHHhhH----HHHHHHHHHhCc---------chhhhhhhh--------------------HHHHHH
Q ss_pred cccCCHHHHHHHHHHHHHHhccCChH---HHHHHHhhCCHHHHHHHHHHHh
Q 000565 967 VHDKNTKLKEAAITCIISVYTHYDST---AVLNFILSLSVEEQNSLRRALK 1014 (1418)
Q Consensus 967 ~~dks~~vR~aA~~~l~aly~~~~~~---~~~~~~~~l~~~~~~~l~~~l~ 1014 (1418)
+...+++.-.-=...+...|.-...+ .++..-.+++..+...+...++
T Consensus 598 ~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~~ 648 (667)
T KOG2286|consen 598 ISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDILK 648 (667)
T ss_pred HhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
No 380
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.24 E-value=1.1e+03 Score=25.88 Aligned_cols=162 Identities=8% Similarity=-0.104 Sum_probs=0.0
Q ss_pred CCHHHHHHHhhcCCCCChhhHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccc
Q 000565 1185 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 1264 (1418)
Q Consensus 1185 ~~v~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~ 1264 (1418)
+.+.++++.|-+.+.. |.|..|+.-|...........+. .+..++.+.+.= .++..++......
T Consensus 45 ~~~~~l~~~Lw~~~~~--E~r~~al~~l~~~~~~~~~~~~~--------~~~~~l~~~~~W------d~vD~~~~~i~g~ 108 (208)
T cd07064 45 EELWELVLELWQQPER--EYQYVAIDLLRKYKKFLTPEDLP--------LLEELITTKSWW------DTVDSLAKVVGGI 108 (208)
T ss_pred HHHHHHHHHHHcchHH--HHHHHHHHHHHHHHhcCCHHHHH--------HHHHHHcCCchH------HHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccccchhhHHHHHHHHHHHHhhcCHHHHHh
Q 000565 1265 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1344 (1418)
Q Consensus 1265 ~~~~~e~~l~~ll~~~~d~~~~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~ 1344 (1418)
+...-+.+...+.+-..+....++++|..+.-......+++.++.++...+.++.+-++.+.==+|..+.++-+
T Consensus 109 ~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~------ 182 (208)
T cd07064 109 LLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP------ 182 (208)
T ss_pred HHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH------
Q ss_pred hhhhhHHHHHHHhcCCCHHHHHHHHH
Q 000565 1345 QLPSFLPALFEAFGNQSADVRKTVVF 1370 (1418)
Q Consensus 1345 ~L~~l~p~l~~~~~d~~seVRkaAv~ 1370 (1418)
+.+++.|.+....-..-.++.|.+
T Consensus 183 --~~V~~fl~~~~~~m~~~s~rea~k 206 (208)
T cd07064 183 --DWVRDFVAAHKLRLSPLSRREALK 206 (208)
T ss_pred --HHHHHHHHHhhhhcChhHHHHHHh
No 381
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=21.23 E-value=1e+03 Score=25.31 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHhhc--CHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhccc
Q 000565 1320 EKTLVTCINCLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL 1384 (1418)
Q Consensus 1320 ~~~~~~alk~l~~lv~~~--~~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~~~ 1384 (1418)
++...+.+.+++.|...- +...+..++..++........ +.--...+.|+..+...+|..+.
T Consensus 100 ~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~---~~~~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 100 KQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ---PPPDEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC---HHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc---CCCcHhHHHHHHHHHHHHHHHHh
Confidence 344566667777666432 444444333333322222111 33344667788888888887666
No 382
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=20.79 E-value=2e+03 Score=30.94 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=36.0
Q ss_pred hhhHHHHHHhcCCCChhHHHHHHHHHHHHHHhcChhHHHhhh
Q 000565 158 RAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1418)
Q Consensus 158 k~ll~~l~~lL~D~~~~VR~aA~~~L~~l~~~~G~~l~~~L~ 199 (1418)
..++-.++.++-+...++|+++.++++.|.+.+|+....++.
T Consensus 563 ~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~~yl~~Vi 604 (1364)
T KOG1823|consen 563 PSILLDICYLLRSRSAELRDASRKTLAKIIKILGPKYLYFVI 604 (1364)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467777888999999999999999999999999987655543
No 383
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=20.59 E-value=3.3e+02 Score=27.41 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCC--chhHHHHHHHHHHhhhhccCCChhhHHHHHHHHHH--H------hhC-CCchhhHHHHHHHH
Q 000565 832 NFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPFESYMERILPHVF--S------RLI-DPKELVRQPCSTTL 900 (1418)
Q Consensus 832 ~l~~l~~~l~~~l~Ds--n~kV~~~~Le~l~~li~~~~~~~~~~l~~ll~~l~--~------klg-D~k~svr~~a~~~L 900 (1418)
.+.+|++.+-+||.|. |.+.+..+|-.|-.++..-.+.+-+|+..-+..+= . .-| |.=-.||.+|..++
T Consensus 34 ~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~ 113 (123)
T cd03571 34 EFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEIL 113 (123)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHH
Confidence 6778999999999998 77899999999998888777666666654432221 1 112 33357899999988
Q ss_pred HHHHh
Q 000565 901 DIVSK 905 (1418)
Q Consensus 901 ~~~~~ 905 (1418)
+.+.+
T Consensus 114 ~Ll~D 118 (123)
T cd03571 114 ELLED 118 (123)
T ss_pred HHhCC
Confidence 87753
No 384
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=20.38 E-value=1.2e+03 Score=31.89 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHH
Q 000565 280 KELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSK 358 (1418)
Q Consensus 280 ~dl~~~l~~i~~~l~~~~dW~~R~~AL~~L~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-D~rs~V~~~A~~~l~~La~ 358 (1418)
+..++++.+-++.|.+-++|..=+.-|..|.+.+.... .+++ ++.=..+.+.|..++. -+-.-|-...+++..+|++
T Consensus 15 ~Ky~a~~~k~l~~F~tv~eW~DyIs~L~~L~k~lq~~S-kf~n-IP~~~lvsrrL~~cLsP~LPaGVH~KTLEvY~yIFe 92 (1618)
T COG5221 15 EKYEAEMTKKLDAFKTVKEWSDYISLLSSLDKTLQKFS-KFPN-IPKKKLVSRRLNQCLSPVLPAGVHNKTLEVYSYIFE 92 (1618)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc-ccCC-CCcHHHHHHHHHhhcCCcCCcchhhhhhhHHHHHHH
Q ss_pred Hhh------------------------------------------hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 000565 359 ELL------------------------------------------GDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKT 396 (1418)
Q Consensus 359 ~lg------------------------------------------~~f~~~~~~llp~Ll~~~~~~~~vi~~sa~~al~~ 396 (1418)
..| .+.++++..++-.|+--+.+...-...-...-|.+
T Consensus 93 ~Ig~eTL~~e~n~w~~Gl~pf~~~~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~t 172 (1618)
T COG5221 93 RIGRETLLKEFNFWTLGLFPFSAHCSILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIIT 172 (1618)
T ss_pred HHhHHHHHhhhhhhhcchhhhhhhhhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHH
Q ss_pred HHHhCCccchH-HHHHHHhhhCCCHHHHHHHHHHHHHHHH--------hCCCCccccccHHHHHHHHHHHhcCCChHHHH
Q 000565 397 MLRNCKAVRVL-PRIADCAKNDRNAVLRARCCEYALLVLE--------HWPDAPEIQRSADLYEDLIRCCVADAMSEVRS 467 (1418)
Q Consensus 397 i~~~~~~~~ll-p~l~~~l~~~Kn~~vR~~~~e~L~~il~--------~~~~~~~l~~~~~~l~~~l~~~l~Dad~eVR~ 467 (1418)
.+++..-+.++ ..+...+ .. ++..|. ..|.|+++ -|... .+..+...++.++..|+.|.|--|.
T Consensus 173 l~k~L~d~~~fw~~~w~il-l~-~~~~R~---g~l~~l~reeNNdsh~d~~~r-lI~p~~gL~VR~l~a~l~dndiLV~- 245 (1618)
T COG5221 173 LFKSLIDPDVFWSSMWGIL-LN-DERLRT---GVLNSLMREENNDSHMDWSER-LILPHAGLMVRALCAGLGDNDILVV- 245 (1618)
T ss_pred HHHhcCChhHHHHHHHHHH-hc-Cccccc---hHHHHHHHHhcCcchhchhhh-ccCCCcchhHHHHHhhcCCCceeee-
Q ss_pred HHHHHHHHHHHHchhHHHHHhccCCHHHHHHH
Q 000565 468 TARMCYRMFAKTWPERSRRLFSSFDPAIQRII 499 (1418)
Q Consensus 468 ~Ar~a~~~l~~~~p~~a~~ll~~Ld~~~qk~L 499 (1418)
|.|+..+...||.+.... ...|+--.|.|
T Consensus 246 --R~~lDlLl~~fp~~S~v~-v~~~~~D~KLL 274 (1618)
T COG5221 246 --RNCLDLLLFVFPDKSHVD-VSADMLDDKLL 274 (1618)
T ss_pred --hhHHHHHHHHcccccchh-hccChhhHHHH
No 385
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=20.36 E-value=1.3e+03 Score=26.41 Aligned_cols=171 Identities=15% Similarity=0.226 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHHHhhC---ChhhHHHHHHHHHHHHHHHhcC------CC--h--HHH-HHHHHHHHHHHHhcccc--c
Q 000565 1202 PTSKHGALQQLIKASVAN---DHSIWTKYFNQILTAVLEVLDD------AD--S--SVR-EVALSLINEMLKNQKDV--M 1265 (1418)
Q Consensus 1202 ~~~r~~al~~L~~~l~~~---~~~~~~~~f~~ll~~ll~~l~d------~~--~--~vr-~~aL~~L~~l~~~~~~~--~ 1265 (1418)
++.|..||.+|.+--... +...|. .|+.+-..|.+++.= .+ . .-| -.||.+|+-++.+...+ |
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~-s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWH-SFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHT-STTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHc-CCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 678999999987654322 244676 677777777776621 11 1 122 25677788887765433 1
Q ss_pred -cccHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhccccchhhHHHHHHHHHHHH
Q 000565 1266 -EDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1334 (1418)
Q Consensus 1266 -~~~~e~~l~~ll~~~~d--~~~~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~s~~~~~~~~alk~l~~lv 1334 (1418)
+..+...|-.+|+...- +.+-+|-+.-..+.++++.=+++ .+++....++..+..-.+..|.-.+.+++
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 22233344444443322 24566777777777777654444 24444444555556666666666655554
Q ss_pred hh-cC-------HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000565 1335 GR-LS-------QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1373 (1418)
Q Consensus 1335 ~~-~~-------~~~l~~~L~~l~p~l~~~~~d~~seVRkaAv~~lv 1373 (1418)
.. -| +|-+......+-..+.....+.++-+=|..+.|+.
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYl 214 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYL 214 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHH
Confidence 21 11 12111111122222233345667777777777744
No 386
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=20.12 E-value=7.9e+02 Score=24.54 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=45.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcccChHhHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHH
Q 000565 6 ELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDN-NFKVSQGALQSLASAAVL 71 (1418)
Q Consensus 6 ~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~Ds-N~~V~~~al~~l~~l~~~ 71 (1418)
+...+++|.-.-.-+++|...... ....+..++..|.+.+.+. ||.++.++|..|-.++..
T Consensus 9 kAT~~~~~~p~~k~~~~I~~~t~~-----~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~ 70 (127)
T smart00273 9 KATNNDEWGPKGKHLREIIQGTHN-----EKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRN 70 (127)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcc-----CHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhc
Confidence 334456688887778887665432 1245778888888888887 999999999999999865
No 387
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=20.06 E-value=2.2e+02 Score=33.55 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=82.6
Q ss_pred CChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHHhhhhc--cCCChhhHHH-HHH
Q 000565 803 SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHH-KVAQAALSTLADIIPS--CRKPFESYME-RIL 878 (1418)
Q Consensus 803 ~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~-kV~~~~Le~l~~li~~--~~~~~~~~l~-~ll 878 (1418)
-.+..|.+|+..|+.++.++.. .+ ..++..+.+--.+.+. -.....+++|-. ... -.+....|.. .+|
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~-~q------~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il 121 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEE-GQ------TAFLSTLIPSYASGNSDDPIANLLTALLD-YDSDLSLDPYRCWFAAVIL 121 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HH-HH------HHHHHTTSSTT--SS--SSSS-HHHHHT-------SS-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHH-HH------HHHHHHHhccCCCCcccchhhHHHHHHHH-hhccccCCHHHHHHHHHHH
Confidence 6899999999999999998643 22 1345555444433331 111113333332 111 1123344443 334
Q ss_pred HHHHHhhCCCchhhHHHHHHH-HHHHHhcCCchhhhHHHHHHhcc----CCCchhHHHHHHHHHHHHhhhhcCCCCC-CC
Q 000565 879 PHVFSRLIDPKELVRQPCSTT-LDIVSKTYSVDSLLPALLRSLDE----QRSPKAKLAVIEFAISSLNKHAMNSEGS-GN 952 (1418)
Q Consensus 879 ~~l~~klgD~k~svr~~a~~~-L~~~~~~~~~~~~l~~l~~~l~~----~~~~k~k~~~L~~l~~~l~~~~~~~~~~-~~ 952 (1418)
-+++.. .+.-|+.+.++ .....+--++..+++.+...|.. ...++++++.|..|..-+.+...-..+| .+
T Consensus 122 ~hll~d----n~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~ 197 (312)
T PF04869_consen 122 MHLLRD----NPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSE 197 (312)
T ss_dssp HHHHTT-----HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCS
T ss_pred HHHHhc----CHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcC
Confidence 444432 22223333333 11123455677788888887764 2358999998888776554321111112 12
Q ss_pred chhHHHHHHHHccccccCCHHHHHHHHHHHHHHhccC
Q 000565 953 LGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHY 989 (1418)
Q Consensus 953 ~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~~ 989 (1418)
.+.+. .+...+.-..+.+.-|+--+.-+|...|.-+
T Consensus 198 ~s~l~-~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 198 GSNLQ-SLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp TTHHH-HHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred cchHH-HHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 22232 2212222234577888888888888888644
Done!