Query 000565
Match_columns 1418
No_of_seqs 343 out of 1426
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 17:11:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000565.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_337-341//hhsearch_pdb/000565hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 1.0 1 1 253.7 77.4 1025 2-1396 9-1204(1230)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 252.1 59.4 466 2-484 51-604 (1230)
3 4ffb_C Protein STU2; tubulin f 1.0 1 1 229.1 20.2 217 4-223 14-249 (278)
4 2of3_A ZYG-9; multifunctional 1.0 1 1 224.9 25.6 200 801-1014 56-262 (266)
5 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 213.1 20.7 212 1190-1405 21-249 (249)
6 2of3_A ZYG-9; multifunctional 1.0 1 1 206.2 18.2 205 2-218 49-264 (266)
7 1b3u_A Protein (protein phosph 1.0 1 1 205.7 42.5 372 2-481 13-395 (588)
8 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 205.4 20.7 213 2-217 19-248 (249)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 202.1 67.5 790 38-1400 11-848 (852)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 198.4 69.2 209 1187-1399 599-835 (861)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=253.74 Aligned_cols=1025 Identities=14% Similarity=0.168 Sum_probs=512.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999820899789999999999999953214695869999999987520366479999999999999984256787886
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~L~s~dWk~R~~ale~L~~~l~~~~~~~~~~~~~~li~~l~~~l~dsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
..+++++.+.|...|..|.+.|.+.+.......+......++..+..++.|.|+.|+..|+.+++.++..++. .+..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~ 85 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVE 85 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHH
T ss_conf 9999755898785999999999999741665787567999999999986699989999999999999975879---8999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH------------HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 45899999828999679999999999999971726------------999998556530-48968999999999999863
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT------------IIVERAGSYAWT-HRSWRVREEFARTVTSAIGL 148 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vre~a~~~L~~l~e~~~p~------------~v~e~ll~~~~~-~KnpkVr~~~l~~l~~~i~~ 148 (1418)
.+++.|++.++|.+..||..+..+|..+++...+. .++..++. ++. +.+|.+|.+++..+..+++.
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999986698388999999999999996797444441178899999999999-875788467999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH--------HHHHHCC---CCCHHHHHHHHHHHHH
Q ss_conf 0877522455259989974079996489999999999987208467--------9865009---9997889999999977
Q 000565 149 FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF--------RDELHRH---NLPNSMVKDINARLER 217 (1418)
Q Consensus 149 ~g~~~~~l~k~~ip~l~~~l~D~n~~VR~aA~~~l~~l~~~~G~~l--------~~~L~~~---~l~~~~l~~l~~~f~~ 217 (1418)
+|....++...+++.+..++.|+++.||..|..+++.+....++.+ ...|... .++..-+..+..-. .
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~-~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS-R 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-H
T ss_conf 276778879999999999875996899999999999999856899999999999998616775568999999999999-9
Q ss_pred HCCCC--CCCCCCCCCC---H---HHHHHCCCC------CCCCCCCCCCCCCCCC-CCCCC-CCC-------CCCCCCCC
Q ss_conf 28989--8989998850---1---211100258------9899996444777435-56899-876-------55667875
Q 000565 218 IQPQI--RSSDGLPNTF---A---ALEIKTASF------NPKKSSPKAKSSTRET-SLFGG-EDI-------TEKLIEPI 274 (1418)
Q Consensus 218 ~~~~~--~~~~~~~~~~---~---~~~~r~~s~------~~~r~~~~~~s~~~~~-~~~g~-~~~-------~~~~v~~~ 274 (1418)
..+.. +..+.....+ . ..+.|.... ...-+..-...-..-. ..... ... +....+
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~-- 321 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN-- 321 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--
T ss_conf 868989988999999999986689778999999999999997848777768999999999827899888764411011--
Q ss_pred CCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5568588999999863000--89999899999999999988149999620789799999989862066218999999999
Q 000565 275 KVYSEKELIREFEKIGSTL--VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHL 352 (1418)
Q Consensus 275 ~i~s~~dl~~~l~~i~~~L--~~~~dW~~R~~AL~~L~~li~~~~~~~~~f~~~l~~L~~~L~~~l~D~rs~Vv~~A~~~ 352 (1418)
.+ ...+..+..+.....+ .++..|+.|..|+..+..++.... +.|.+.+..+.+.+...+.|....|...++.+
T Consensus 322 ~~-~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 322 AM-DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH---EMLPEFYKTVSPALISRFKEREENVKADVFHA 397 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCC---TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHH
T ss_pred CC-CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 22-334465301100136664555677999999999999997466---67999999998999987179865799999999
Q ss_pred HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC------CCHH
Q ss_conf 9999999646-------------------08999999999999981111489999999999999982795------0109
Q 000565 353 LCFLSKELLG-------------------DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA------VRVL 407 (1418)
Q Consensus 353 l~~La~~lg~-------------------~f~~~~~~ilp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~------~~ll 407 (1418)
+..+...++. .+..+...++|.+++.+.+....+|.++..++..++..++. ..++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll 477 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 477 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 99999972424343467520135645599999874699999999861377879999999999999976110577799999
Q ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH---
Q ss_conf 999988640799--999999999999999767997100002799999999981479967999999999999987416---
Q 000565 408 PRIADCAKNDRN--AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPE--- 482 (1418)
Q Consensus 408 ~~l~~~l~~~Kn--~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~i~~~l~Dad~eVR~~Ar~a~~~l~~~~p~--- 482 (1418)
+.+.+.+ .+++ ..+|..++..+..++...+.. .+..+++.+.+.+..++.|.+..||..|..++..+...+++
T Consensus 478 ~~l~~~L-~d~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 478 PGIIFSL-NDKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp HHHHHHT-TCSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999997-487885168999999999999838988-78867999999999997142468999999999999987167555
Q ss_pred ----HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----7999761699999999852049987655898522237765546555556778899865310134555567898767
Q 000565 483 ----RSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLS 558 (1418)
Q Consensus 483 ----~a~~ll~~Ld~~~qk~L~~e~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~ 558 (1418)
....++..+=+.....|...+. .+.++.. ++
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~-------~~~vr~~----------------------a~---------------- 590 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADI-------DQEVKER----------------------AI---------------- 590 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSS-------CHHHHHH----------------------HH----------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCC-------CHHHHHH----------------------HH----------------
T ss_conf 65323278999999999998732699-------8899999----------------------99----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40336886533221002356786331111245897421344455789987666656788789999999999755788888
Q 000565 559 SGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDD 638 (1418)
Q Consensus 559 ~~~~~~~~~~~~~~~~rs~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~rs~s~~~~~~~~~s~~~~~~~~~~~~~~~ 638 (1418)
+....+... .|. ...+ ..+...+
T Consensus 591 ----------------~~lg~L~~~------------~g~----~~~~--------------------~~~~~l~----- 613 (1230)
T 1u6g_C 591 ----------------SCMGQIICN------------LGD----NLGS--------------------DLPNTLQ----- 613 (1230)
T ss_dssp ----------------HHHHHHHHH------------TGG----GCCT--------------------HHHHHHH-----
T ss_pred ----------------HHHHHHHHH------------HCC----HHHH--------------------HHHHHHH-----
T ss_conf ----------------999999998------------270----3244--------------------3889999-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 74322234566887788889987653035321013688988878886656767765445676543334201100124431
Q 000565 639 TNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREAR 718 (1418)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~r~~~~r~~~~~~~~~~~~~~~~ 718 (1418)
.+.. ....... |... .+
T Consensus 614 ----~L~~---~l~~e~~----------------------------------------r~~~----------------~~ 630 (1230)
T 1u6g_C 614 ----IFLE---RLKNEIT----------------------------------------RLTT----------------VK 630 (1230)
T ss_dssp ----HHHH---HTTSSSH----------------------------------------HHHH----------------HH
T ss_pred ----HHHH---HHCCCHH----------------------------------------HHHH----------------HH
T ss_conf ----9998---8445305----------------------------------------9999----------------99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 04797654111211236998777888888864431001258887766545666742223588776668978778887437
Q 000565 719 RFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEG 798 (1418)
Q Consensus 719 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 798 (1418)
.+ .. +.. + . + ..+...|.. .+...|..
T Consensus 631 al----------~~--------------------------i~~-~----~--~------~~~~~~~~~---~i~~~L~~- 657 (1230)
T 1u6g_C 631 AL----------TL--------------------------IAG-S----P--L------KIDLRPVLG---EGVPILAS- 657 (1230)
T ss_dssp HH----------HH--------------------------HTT-C----S--S------CCCCHHHHH---HHHHHHHH-
T ss_pred HH----------HH--------------------------HHH-C----C--C------CCCHHHHHH---HHHHHHHH-
T ss_conf 99----------99--------------------------981-8----5--6------443688899---99999999-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999825689999999999954998558999989999999875207971469999999987550103988055899999
Q 000565 799 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 878 (1418)
Q Consensus 799 ~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~~l~~~l~~lL 878 (1418)
...+.+|..|..++..|..++......+.. ..+..++..+.+.+.|.+..+...+++.|..++...+..+.++...++
T Consensus 658 ~l~~~~~~~r~~a~~al~~l~~~~~~~~~~--~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l 735 (1230)
T 1u6g_C 658 FLRKNQRALKLGTLSALDILIKNYSDSLTA--AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735 (1230)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHCCTTCCH--HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 998678889999999999999604333898--999999999876357541878999999999998849126777677689
Q ss_pred HHHHHHHCCCC--H--------------------------------------------HHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99997307981--2--------------------------------------------4387999999999730883000
Q 000565 879 PHVFSRLIDPK--E--------------------------------------------LVRQPCSTTLDIVSKTYSVDSL 912 (1418)
Q Consensus 879 ~~l~~klgD~k--~--------------------------------------------~vr~~a~~~L~~~~~~~~~~~~ 912 (1418)
+.++..+.+.. + +++..+.+++..+....+....
T Consensus 736 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~ 815 (1230)
T 1u6g_C 736 NELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 815 (1230)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999975862105789999999999983478878899999998500357887320001048999999999984656668
Q ss_pred HHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 69999973138991----25899999999998653049999898202799999772012368878899999999997303
Q 000565 913 LPALLRSLDEQRSP----KAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 988 (1418)
Q Consensus 913 l~~l~~~l~~~~~~----k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~aly~~ 988 (1418)
..+.+++...+++ ..+.-.|..+.. +..+ ++-..+ .. ....+...+.+.+.+||.+|..++..++..
T Consensus 816 -~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~-~~~~~~---~~---l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~ 886 (1230)
T 1u6g_C 816 -AVVGQFIQDVKNSRSTDSIRLLALLSLGE-VGHH-IDLSGQ---LE---LKSVILEAFSSPSEEVKSAASYALGSISVG 886 (1230)
T ss_dssp -HHHTTTTTTTTTTTCCHHHHHHHHHHHHH-HHHH-SCCCSC---TH---HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HCCC-CCCCCC---CC---HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf -99999999837887667999999999998-6156-787656---41---899999984799778999999996877526
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7907999999408999899999998410622588----889997421100146888999998888885454556677777
Q 000565 989 YDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEV----DLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHY 1064 (1418)
Q Consensus 989 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1064 (1418)
+ .. .....+...+... ++... .+...+...+ .... .++
T Consensus 887 ~-~~-----------~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~-----------~~~~-----~~~--------- 928 (1230)
T 1u6g_C 887 N-LP-----------EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSAS-----------VVGL-----KPY--------- 928 (1230)
T ss_dssp T-HH-----------HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSC-----------STTT-----HHH---------
T ss_pred C-HH-----------HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCC-----------HHHH-----HHH---------
T ss_conf 9-99-----------8899999987266-0324988999999982387-----------6667-----766---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78889999889888876630000001377898887223576643105788877776666788998877898888767566
Q 000565 1065 FGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDING 1144 (1418)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1144 (1418)
.+.+...+-...+ + .+ ++. |..
T Consensus 929 --------------------------------------~~~i~~~L~~~~~-~-----~~--------~~~---r~~--- 950 (1230)
T 1u6g_C 929 --------------------------------------VENIWALLLKHCE-C-----AE--------EGT---RNV--- 950 (1230)
T ss_dssp --------------------------------------HHHHHHHHTTCCC-C-----SS--------TTH---HHH---
T ss_pred --------------------------------------HHHHHHHHHHHHC-C-----CC--------HHH---HHH---
T ss_conf --------------------------------------9999999998733-8-----30--------446---899---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 32222233467999999986666989985322367788999978999985209999912699999999998830892448
Q 000565 1145 LRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIW 1224 (1418)
Q Consensus 1145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~ 1224 (1418)
. .+.. ..+. . .+..+.++.+...+.+.+ +..|..++..+..++...... +
T Consensus 951 ~------a~~l-------g~l~---------~----~~~~~l~p~l~~~l~~~~---~~~R~~~~~~l~~~~~~~~~~-~ 1000 (1230)
T 1u6g_C 951 V------AECL-------GKLT---------L----IDPETLLPRLKGYLISGS---SYARSSVVTAVKFTISDHPQP-I 1000 (1230)
T ss_dssp H------HHHH-------HHHH---------H----SSGGGTHHHHTTTSSSSC---HHHHHHHHHHTGGGCCSSCCT-H
T ss_pred H------HHHH-------HHHH---------C----CCHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCCHH-H
T ss_conf 9------9887-------5665---------0----676888899999856997---889999999999997068233-5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC------------------CHH
Q ss_conf 99899999999999318894799999999999997266643111999999999993699------------------288
Q 000565 1225 TKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA------------------VPK 1286 (1418)
Q Consensus 1225 ~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~------------------~~~ 1286 (1418)
.++++.++..++..+.|.+..||..|+.+|..++++.+.-+.+++..++|.|++....+ .-+
T Consensus 1001 ~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~ 1080 (1230)
T 1u6g_C 1001 DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLD 1080 (1230)
T ss_dssp HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHH
T ss_conf 89899989999986489858799999999999984285768977988989999883026876013305896023677489
Q ss_pred HHHHHHHHHHHHHHHCCH----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 999999999999911290----44787522310266314598999999999821398899953103699999982499--
Q 000565 1287 VSNEAEHCLTVVLSQYDP----FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ-- 1360 (1418)
Q Consensus 1287 V~~aA~~~l~~i~~~~~p----~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~i~p~l~~~~~d~-- 1360 (1418)
+|.+|.+|+-++..++.. ..++..+..++.. ++-++..|..|+.++++..+ ..+..+++.+++.+.+.+...
T Consensus 1081 ~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 1158 (1230)
T 1u6g_C 1081 IRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCP-SAVLQRLDRLVEPLRATCTTKVK 1158 (1230)
T ss_dssp HHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCC-HHHHTTTTTTHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999888747899999999804676-68899999999999984087-98999999999999999841146
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf ----------877999999999999998411012000025857899
Q 000565 1361 ----------SADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1396 (1418)
Q Consensus 1361 ----------~seVRkaAv~~lv~~~~~lg~~~~p~l~~L~~s~~k 1396 (1418)
.-|..+++..|+.++..+.|-+--|.+..+-..-++
T Consensus 1159 ~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~ 1204 (1230)
T 1u6g_C 1159 ANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISS 1204 (1230)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 3436524889999999999999999807884227489999999980
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=252.12 Aligned_cols=466 Identities=12% Similarity=0.129 Sum_probs=300.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 88999820899789999999999999953214695869999999987520366479999999999999984256------
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEH------ 75 (1418)
Q Consensus 2 e~~l~~L~s~dWk~R~~ale~L~~~l~~~~~~~~~~~~~~li~~l~~~l~dsN~~V~~~al~~l~~l~~~l~~~------ 75 (1418)
..+++.+.+++|..|..|+..|..++.. .....+..++..+...+.|.+..|+..++.+++.++..++..
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~----~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~ 126 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSK----VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 9999986699989999999999999975----879899999999999866983889999999999999967974444411
Q ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHC----H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 787886458999998289-996799999999999999717----2--699999855653048968999999999999863
Q 000565 76 FKLHFNALVPAVVERLGD-AKQPVRDAARRLLLTLMEVSS----P--TIIVERAGSYAWTHRSWRVREEFARTVTSAIGL 148 (1418)
Q Consensus 76 ~~~~~~~ilp~LleklgD-~k~~Vre~a~~~L~~l~e~~~----p--~~v~e~ll~~~~~~KnpkVr~~~l~~l~~~i~~ 148 (1418)
...+...++|.|++.+.| ....+|+.+..+|..+++..+ | ..+++.++. .+.+.++.||..++.++..++..
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78899999999999875788467999999999999998276778879999999999-87599689999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHH-----------C--CCCCHHHHHHHHHH
Q ss_conf 08775224552599899740799-9648999999999998720846798650-----------0--99997889999999
Q 000565 149 FSATELTLQRAILPPILQMLNDP-NPGVREAAILCIEEMYTYAGPQFRDELH-----------R--HNLPNSMVKDINAR 214 (1418)
Q Consensus 149 ~g~~~~~l~k~~ip~l~~~l~D~-n~~VR~aA~~~l~~l~~~~G~~l~~~L~-----------~--~~l~~~~l~~l~~~ 214 (1418)
.+... + ..+++.+...+.+. +..+|..++++++.++..+|..+..++. . ..++..-+..+..
T Consensus 206 ~~~~~--~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~- 281 (1230)
T 1u6g_C 206 CGNIV--F-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES- 281 (1230)
T ss_dssp C------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH-
T ss_pred CCHHH--H-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-
T ss_conf 68999--9-9999999998616775568999999999999986898998899999999998668977899999999999-
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-C-CCC--CCC--CCCCCC--------CCCCC-CCCC---
Q ss_conf 9772898989899988501211100258989999644477-7-435--568--998765--------56678-7555---
Q 000565 215 LERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSS-T-RET--SLF--GGEDIT--------EKLIE-PIKV--- 276 (1418)
Q Consensus 215 f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~-~-~~~--~~~--g~~~~~--------~~~v~-~~~i--- 276 (1418)
+.+..+. . ...|.. ..-+.-.......+..... . ... ... +..+.+ +.+.. .+..
T Consensus 282 l~~~~~~----~--~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 282 FVRRCPK----E--VYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHCTTC----C--CHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHH
T ss_pred HHHHCHH----H--HHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 9997848----7--777689-99999999827899888764411011223344653011001366645556779999999
Q ss_pred --------CCHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHCCCC---------------C-CCHHHHHHHH
Q ss_conf --------685889999998630008---999989999999999998814999---------------9-6207897999
Q 000565 277 --------YSEKELIREFEKIGSTLV---PDKDWSVRIAAMQRVEGLVLGGAA---------------D-HPCFRGLLKQ 329 (1418)
Q Consensus 277 --------~s~~dl~~~l~~i~~~L~---~~~dW~~R~~AL~~L~~li~~~~~---------------~-~~~f~~~l~~ 329 (1418)
.....+.+.+.++.+.+. .+.++..|.+++..+..++..... . ...+...+..
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999997466679999999989999871798657999999999999997242434346752013564559999987469
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHCCC----
Q ss_conf 9998986206621899999999999999996460899999999999998111148--9999999999999982795----
Q 000565 330 LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVL--VIAESSDNCIKTMLRNCKA---- 403 (1418)
Q Consensus 330 L~~~L~~~l~D~rs~Vv~~A~~~l~~La~~lg~~f~~~~~~ilp~Ll~~~~~~~~--vi~~sa~~al~~i~~~~~~---- 403 (1418)
++..+...+.|....+...+|..++.++..++..+.++.+.++|.+++.+.+... .++..+..++..+++..+.
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 514 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH 514 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999998613778799999999999999761105777999999999997487885168999999999999838988788
Q ss_pred ---CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Q ss_conf ---010999998864079999999999999999976799-----7100002799999999981--479967999999999
Q 000565 404 ---VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD-----APEIQRSADLYEDLIRCCV--ADAMSEVRSTARMCY 473 (1418)
Q Consensus 404 ---~~ll~~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~-----~~~l~~~~~~l~~~i~~~l--~Dad~eVR~~Ar~a~ 473 (1418)
..++|.+...+ .++++.+|..++..+..+++..+. ...+..+.+.+.+.+...+ .|.+++||..|..++
T Consensus 515 ~~l~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~l 593 (1230)
T 1u6g_C 515 PHVQALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCM 593 (1230)
T ss_dssp HHHTTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 67999999999997-14246899999999999998716755565323278999999999998732699889999999999
Q ss_pred HHHHHHCHHHH
Q ss_conf 99998741679
Q 000565 474 RMFAKTWPERS 484 (1418)
Q Consensus 474 ~~l~~~~p~~a 484 (1418)
+.+....++..
T Consensus 594 g~L~~~~g~~~ 604 (1230)
T 1u6g_C 594 GQIICNLGDNL 604 (1230)
T ss_dssp HHHHHHTGGGC
T ss_pred HHHHHHHCCHH
T ss_conf 99999827032
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=229.14 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=181.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH------
Q ss_conf 9998208997899999999999999532146958----699999999875203664799999999999999842------
Q 000565 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSA----EVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG------ 73 (1418)
Q Consensus 4 ~l~~L~s~dWk~R~~ale~L~~~l~~~~~~~~~~----~~~~li~~l~~~l~dsN~~V~~~al~~l~~l~~~l~------ 73 (1418)
+-++|.|++||+|++||++|.+++.......... .+..+...+.+.++|+|+.|++.+++++..++..++
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77752068189999999999999863865555306799999989999998545449999999999999999851221012
Q ss_pred HHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56787886458999998-2899967999999999999997172-699999855653048968999999999999863087
Q 000565 74 EHFKLHFNALVPAVVER-LGDAKQPVRDAARRLLLTLMEVSSP-TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1418)
Q Consensus 74 ~~~~~~~~~ilp~Llek-lgD~k~~Vre~a~~~L~~l~e~~~p-~~v~e~ll~~~~~~KnpkVr~~~l~~l~~~i~~~g~ 151 (1418)
..+..++..++|.|++| +||.|..+|+.+.++|..+++...+ ..+++.++. +++||||+++.+++.||..++..||.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIP-FFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 02588899998999999705763899999999999999861769999999999-88426877899999999999998498
Q ss_pred CCCHH---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH----HHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 75224---552599899740799964899999999999872084679----8650099997889999999977289898
Q 000565 152 TELTL---QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFR----DELHRHNLPNSMVKDINARLERIQPQIR 223 (1418)
Q Consensus 152 ~~~~l---~k~~ip~l~~~l~D~n~~VR~aA~~~l~~l~~~~G~~l~----~~L~~~~l~~~~l~~l~~~f~~~~~~~~ 223 (1418)
...+. .+.+++.+.++++|+|++||++|+.+++++|+|+|+.+. .++. +++|+++++|+++|+++.+..+
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~--~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK--KLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTT--SSCHHHHHHHHHHHSCCCC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 7688144799999999999817869999999999999999968434455566661--1899999999999986679999
No 4
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=224.85 Aligned_cols=200 Identities=14% Similarity=0.258 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC---CHHH-HHHH
Q ss_conf 99982568999999999995499855899998999999987520797146999999998755010398---8055-8999
Q 000565 801 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK---PFES-YMER 876 (1418)
Q Consensus 801 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~---~l~~-~l~~ 876 (1418)
.++||+.|.+|++.|+..+++.++ ++..+++.+++|++.||.|+|++|.+.+||+|..++..+.+ .+.+ ....
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~---~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPR---SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHH---HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 287799999999999988301769---99999999999999997188799999999999999999986455650989997
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999973079812438799999999973088300069999973138991258999999999986530499998982027
Q 000565 877 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 956 (1418)
Q Consensus 877 lL~~l~~klgD~k~~vr~~a~~~L~~~~~~~~~~~~l~~l~~~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~ 956 (1418)
+||.|++|+||+|+.||++++.+|..+...+|++.++++++..+ ..||+|+|.++|+++..++..|++.+
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~~--------- 202 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYYITNAGISP--------- 202 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSGG---------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCC---------
T ss_conf 89999998289748899999999999998789999999999997-16989999999999999998629972---------
Q ss_pred HHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999---977201236887889999999999730379079999994089998999999984
Q 000565 957 KLWL---AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 1014 (1418)
Q Consensus 957 ~~~l---~~i~~l~~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 1014 (1418)
..++ ..|+.+++|++++||.||.++++++|++.|.. +++++.+||+..++++.+.++
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~~ 262 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIK 262 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHH
T ss_conf 000243479999873998789999999999999981199-999884489999999999986
No 5
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=213.06 Aligned_cols=212 Identities=14% Similarity=0.215 Sum_probs=179.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH-HHHHCCHHHH--HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 9998520999991269999999999-8830892448--998999999999993-18894799999999999997266-64
Q 000565 1190 ILHLMCNGNDGSPTSKHGALQQLIK-ASVANDHSIW--TKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQK-DV 1264 (1418)
Q Consensus 1190 ll~~l~~~~~~~~~~r~~al~~L~~-~l~~~~~~~~--~~~f~~ll~~ll~~l-~d~~~~vr~~aL~~L~~l~~~~~-~~ 1264 (1418)
....+... .|.+|++|+..|.. ++.. ....+ ...|..++..|...+ +|+|..||+.|+.+|..|++.++ ..
T Consensus 21 f~~~l~s~---~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITSS---KWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTCS---SHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78785168---7999999999999999745-9865667423999999999983358989999999999999997626545
Q ss_pred CC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 31-119999999999936992889999999999999112------9-044787522310266314598999999999821
Q 000565 1265 ME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY------D-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1336 (1418)
Q Consensus 1265 ~~-~~~e~~l~~ll~~~~d~~~~V~~aA~~~l~~i~~~~------~-p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~ 1336 (1418)
|. +|+..++|.+|++++|+.+.|++++..|+.+|+.++ + ++.++..|...+.+++|+++..++.+|..+++.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 41878999999999987379779999999999999997301235776999999999987699839999999999999987
Q ss_pred CCH--HHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 398--8999531-03699999982499877999999999999998411-012000025857899999999843
Q 000565 1337 LSQ--EELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRI 1405 (1418)
Q Consensus 1337 ~~~--~~l~~~l-~~i~p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~-~~~p~l~~L~~s~~kll~~yi~r~ 1405 (1418)
++. +.+..++ +.++|.|.++++|++++||++|+.||+.+|.++|+ ++.||++.|++.+++.|..|++++
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~~ 249 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKTL 249 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6785066889879999999999866998999999999999999981978789999987088999999987459
No 6
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=206.24 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=184.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 88999820899789999999999999953214695869999999987520----366479999999999999984256--
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLK----DNNFKVSQGALQSLASAAVLSGEH-- 75 (1418)
Q Consensus 2 e~~l~~L~s~dWk~R~~ale~L~~~l~~~~~~~~~~~~~~li~~l~~~l~----dsN~~V~~~al~~l~~l~~~l~~~-- 75 (1418)
+++..++.++|||.|++|++.|.+.++.. ..++...+|.+.+|++ |+|++|...+++++..++..+++.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~-----~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS-----PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC-----HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999862877999999999999883017-----6999999999999999997188799999999999999999986455
Q ss_pred -HHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -787-886458999998289996799999999999999717269999985565304896899999999999986308775
Q 000565 76 -FKL-HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE 153 (1418)
Q Consensus 76 -~~~-~~~~ilp~LleklgD~k~~Vre~a~~~L~~l~e~~~p~~v~e~ll~~~~~~KnpkVr~~~l~~l~~~i~~~g~~~ 153 (1418)
+.. .+..++|.|++|+||+|+.||+.+++++..+++.++|..+++.++. +++|||||+|++|+.++..+++.||..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 650989997899999982897488999999999999987899999999999-971698999999999999999862997-
Q ss_pred CHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 22455259---989974079996489999999999987208467986500999978899999999772
Q 000565 154 LTLQRAIL---PPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERI 218 (1418)
Q Consensus 154 ~~l~k~~i---p~l~~~l~D~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~ 218 (1418)
. ...+ |.+.++++|+|++||++|++|++++|+++|+.+..++. +|+++.++.|+.+|...
T Consensus 202 --~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg--~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 202 --P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG--RMADKDKSLVEERIKRT 264 (266)
T ss_dssp --G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred --C-CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHC
T ss_conf --2-000243479999873998789999999999999981199999884--48999999999998644
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=205.71 Aligned_cols=372 Identities=15% Similarity=0.113 Sum_probs=239.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999820899789999999999999953214695869999999987520366479999999999999984256787886
Q 000565 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1418)
Q Consensus 2 e~~l~~L~s~dWk~R~~ale~L~~~l~~~~~~~~~~~~~~li~~l~~~l~dsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1418)
+.+++.+.+.||..|..++..|..+....+. ......++..+...+ |.+..|...+.++++.+....+.. .+..
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~---~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~ 86 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGV---ERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVH 86 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH---HHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGG
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCH--HHHH
T ss_conf 9999985062199999999719999998697---989998998898755-785899999999997787605859--8999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 45899999828999679999999999999971726999998---556530489689999999999998630877522455
Q 000565 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERA---GSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQR 158 (1418)
Q Consensus 82 ~ilp~LleklgD~k~~Vre~a~~~L~~l~e~~~p~~v~e~l---l~~~~~~KnpkVr~~~l~~l~~~i~~~g~~~~~l~k 158 (1418)
.++|.|...+.|....||+.+.++|..+++...+..+...+ +.....+.+|.+|..++..+..+...++.. .. +
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~-~ 163 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VK-A 163 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HH-H
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH--HH-H
T ss_conf 98999999874760799999999999999979999999999999999850777179999999999999856999--99-9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 25998997407999648999999999998720846798650099997889999999977289898989998850121110
Q 000565 159 AILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIK 238 (1418)
Q Consensus 159 ~~ip~l~~~l~D~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r 238 (1418)
.++|.+..++.|++++||.+|..+++.+....|.... . .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--~----------~----------------------------- 202 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--K----------S----------------------------- 202 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--H----------H-----------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHH--H----------H-----------------------------
T ss_conf 9999999984899788999999989999998167767--9----------9-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02589899996444777435568998765566787555685889999998630008999989999999999998814999
Q 000565 239 TASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAA 318 (1418)
Q Consensus 239 ~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~v~~~~i~s~~dl~~~l~~i~~~L~~~~dW~~R~~AL~~L~~li~~~~~ 318 (1418)
++ +..+. .+..+.+|..|..|+..+..+.....
T Consensus 203 ------------------------------------------~l---~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~- 235 (588)
T 1b3u_A 203 ------------------------------------------EI---IPMFS-NLASDEQDSVRLLAVEACVNIAQLLP- 235 (588)
T ss_dssp ------------------------------------------TH---HHHHH-HHHTCSCHHHHTTHHHHHHHHHHHSC-
T ss_pred ------------------------------------------HH---HHHHH-HHHCCCCHHHHHHHHHHHHHHHHHCC-
T ss_conf ------------------------------------------99---99999-88249928899989999999998579-
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 96207897999999898620662189999999999999999646089999999999999811114899999999999999
Q 000565 319 DHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTML 398 (1418)
Q Consensus 319 ~~~~f~~~l~~L~~~L~~~l~D~rs~Vv~~A~~~l~~La~~lg~~f~~~~~~ilp~Ll~~~~~~~~vi~~sa~~al~~i~ 398 (1418)
...+ ...+.+.+...+.|....|...++.+++.++..+++.. +...++|.+++.+.+....+|..+..++..++
T Consensus 236 -~~~~---~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 236 -QEDL---EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp -HHHH---HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHH---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf -8888---87899999998069977899999999999999819521--05589999999858995899999998799999
Q ss_pred HHCCC--------CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 82795--------0109999988640799999999999999999767997100002799999999981479967999999
Q 000565 399 RNCKA--------VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTAR 470 (1418)
Q Consensus 399 ~~~~~--------~~ll~~l~~~l~~~Kn~~vR~~~~e~L~~il~~~~~~~~l~~~~~~l~~~i~~~l~Dad~eVR~~Ar 470 (1418)
..++. +.++|.+...+ +++++.+|..++..|..+....+.. ...+.+.+.+...+.|.+++||..+.
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~p~l~~~l~d~~~~Vr~~a~ 384 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGKD----NTIEHLLPLFLAQLKDECPEVRLNII 384 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCHH----HHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 972744436579999999999986-1998899999999999998886276----78888999999983798368999999
Q ss_pred HHHHHHHHHCH
Q ss_conf 99999998741
Q 000565 471 MCYRMFAKTWP 481 (1418)
Q Consensus 471 ~a~~~l~~~~p 481 (1418)
.++..+...++
T Consensus 385 ~~l~~l~~~~~ 395 (588)
T 1b3u_A 385 SNLDCVNEVIG 395 (588)
T ss_dssp TTCHHHHHHSC
T ss_pred HHHHHHHHHCC
T ss_conf 98999997549
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=205.42 Aligned_cols=213 Identities=19% Similarity=0.257 Sum_probs=185.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHCCCC-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 889998208997899999999999-9995321469-586999999998752-03664799999999999999842-5678
Q 000565 2 EEALELARAKDTKERMAGVERLHQ-LLEASRKSLT-SAEVTSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSG-EHFK 77 (1418)
Q Consensus 2 e~~l~~L~s~dWk~R~~ale~L~~-~l~~~~~~~~-~~~~~~li~~l~~~l-~dsN~~V~~~al~~l~~l~~~l~-~~~~ 77 (1418)
.+|.+.+.|++|++|.+|++.|.. +++...+... ..++..+++.+.+++ +|+|+.|+..|+.+++.++++++ +.|.
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 20787851687999999999999999745986566742399999999998335898999999999999999762654541
Q ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------C-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf -788645899999828999679999999999999971------7-26999998556530489689999999999998630
Q 000565 78 -LHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS------S-PTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1418)
Q Consensus 78 -~~~~~ilp~LleklgD~k~~Vre~a~~~L~~l~e~~------~-p~~v~e~ll~~~~~~KnpkVr~~~l~~l~~~i~~~ 149 (1418)
+|...++|.|+++++|++..|++++..+|..+++.+ + ++.+++.|+. +++||||++|++++.||..++...
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~-~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE-HMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8789999999999873797799999999999999973012357769999999999-876998399999999999999876
Q ss_pred CCC--CC-HHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 877--52-245-525998997407999648999999999998720846-798650099997889999999977
Q 000565 150 SAT--EL-TLQ-RAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLER 217 (1418)
Q Consensus 150 g~~--~~-~l~-k~~ip~l~~~l~D~n~~VR~aA~~~l~~l~~~~G~~-l~~~L~~~~l~~~~l~~l~~~f~~ 217 (1418)
+.. .+ ... +.++|.+.+++.|++++||++|+++++.+++.+|+. +.+++. +|.+.+++.|...+++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~--~Ld~~k~~ki~~~~~~ 248 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLE--HLDNLKRKKIEETVKT 248 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHH--HSCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_conf 7850668898799999999998669989999999999999999819787899999--8708899999998745
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=202.11 Aligned_cols=790 Identities=12% Similarity=0.143 Sum_probs=442.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----H
Q ss_conf 699999999875203664799999999999999842567878864589999982899967999999999999997----1
Q 000565 38 EVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV----S 113 (1418)
Q Consensus 38 ~~~~li~~l~~~l~dsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LleklgD~k~~Vre~a~~~L~~l~e~----~ 113 (1418)
.+..+...+... .++|..++..|-+.|..+.. .+.|..+ +-.++..+.+....||..|.-.|...+.. .
T Consensus 11 ~~~~l~~~l~~~-~s~d~~~r~~Ae~~L~~~~~--~p~~~~~----l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 11 GLQQILQLLKES-QSPDTTIQRTVQQKLEQLNQ--YPDFNNY----LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHTT--SHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH--CCCHHHH----HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 399999999987-39498999999999999870--9988999----9999856688986799999999999898744779
Q ss_pred CH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 72---699999855653048968999999999999863087752245525998997407999648999999999998720
Q 000565 114 SP---TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1418)
Q Consensus 114 ~p---~~v~e~ll~~~~~~KnpkVr~~~l~~l~~~i~~~g~~~~~l~k~~ip~l~~~l~D~n~~VR~aA~~~l~~l~~~~ 190 (1418)
++ ..+-+.++. ++.+.++.||..+..++..++...+.. .. ..+++.+..++.+.+..+|+.|..++..++...
T Consensus 84 ~~~~~~~ik~~ll~-~l~~~~~~vr~~~a~~i~~ia~~~~~~--~w-p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 84 PNGVTDFIKSECLN-NIGDSSPLIRATVGILITTIASKGELQ--NW-PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp CHHHHHHHHHHHHT-TTTCSSHHHHHHHHHHHHHHHHHTTTT--TC-TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCCC--CC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-874998999999999999999864813--56-899999999870999899999999999999985
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84679865009999788999999997728989898999885012111002589899996444777435568998765566
Q 000565 191 GPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKL 270 (1418)
Q Consensus 191 G~~l~~~L~~~~l~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~s~~~~~~~~g~~~~~~~~ 270 (1418)
++.+.... + .
T Consensus 160 ~~~~~~~~----~----------------------~-------------------------------------------- 169 (852)
T 4fdd_A 160 AEILDSDV----L----------------------D-------------------------------------------- 169 (852)
T ss_dssp TTHHHHCS----S----------------------S--------------------------------------------
T ss_pred HHHHCHHH----H----------------------C--------------------------------------------
T ss_conf 78756343----1----------------------3--------------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 78755568588999999863000899998999999999999881499996207897999999898620662189999999
Q 000565 271 IEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQAC 350 (1418)
Q Consensus 271 v~~~~i~s~~dl~~~l~~i~~~L~~~~dW~~R~~AL~~L~~li~~~~~~~~~f~~~l~~L~~~L~~~l~D~rs~Vv~~A~ 350 (1418)
..+...+..+...+ .+.+++.|..|+..+..++... ...+...+..++..+...+.|....|.+.+|
T Consensus 170 ---------~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~---~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~ 236 (852)
T 4fdd_A 170 ---------RPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISR---TQALMLHIDSFIENLFALAGDEEPEVRKNVC 236 (852)
T ss_dssp ---------SCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTT---CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf ---------32999999999985-6797899999999999998646---3879988999999999871799778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999964608999999999999981111489999999999999982795010999998864079999999999999
Q 000565 351 HLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 430 (1418)
Q Consensus 351 ~~l~~La~~lg~~f~~~~~~ilp~Ll~~~~~~~~vi~~sa~~al~~i~~~~~~~~ll~~l~~~l~~~Kn~~vR~~~~e~L 430 (1418)
.++..+++.....+.++...+++.+++.+.+....+|..|..++..+++.... +
T Consensus 237 ~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-------------------~------- 290 (852)
T 4fdd_A 237 RALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-------------------K------- 290 (852)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-------------------H-------
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH-------------------H-------
T ss_conf 99999998577989988999999999870699689999999999998603657-------------------9-------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHH----------------------HHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999767997100002799999999981479967----------------------999999999999987416799976
Q 000565 431 LLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE----------------------VRSTARMCYRMFAKTWPERSRRLF 488 (1418)
Q Consensus 431 ~~il~~~~~~~~l~~~~~~l~~~i~~~l~Dad~e----------------------VR~~Ar~a~~~l~~~~p~~a~~ll 488 (1418)
. .+..++..+.+.+...+.+.+.+ +|.+|..++..+...+|+....
T Consensus 291 -----~-----~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-- 358 (852)
T 4fdd_A 291 -----D-----VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-- 358 (852)
T ss_dssp -----H-----HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred -----H-----HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH--
T ss_conf -----8-----8788898899999987578676799866984432224564011169999999999998746187899--
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 16999999998520499876558985222377655465555567788998653101345555678987674033688653
Q 000565 489 SSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKS 568 (1418)
Q Consensus 489 ~~Ld~~~qk~L~~e~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 568 (1418)
T Consensus 359 -------------------------------------------------------------------------------- 358 (852)
T 4fdd_A 359 -------------------------------------------------------------------------------- 358 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32210023567863311112458974213444557899876666567887899999999997557888887432223456
Q 000565 569 LNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTT 648 (1418)
Q Consensus 569 ~~~~~~rs~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~rs~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1418)
T Consensus 359 -------------------------------------------------------------------------------- 358 (852)
T 4fdd_A 359 -------------------------------------------------------------------------------- 358 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68877888899876530353210136889888788866567677654456765433342011001244310479765411
Q 000565 649 SGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQ 728 (1418)
Q Consensus 649 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1418)
T Consensus 359 -------------------------------------------------------------------------------- 358 (852)
T 4fdd_A 359 -------------------------------------------------------------------------------- 358 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 12112369987778888888644310012588877665456667422235887766689787788874379999982568
Q 000565 729 YLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCAR 808 (1418)
Q Consensus 729 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~W~~R 808 (1418)
.+...+.+ .+.+.+|..|
T Consensus 359 -------------------------------------------------------------~l~~~l~~-~l~~~~~~~R 376 (852)
T 4fdd_A 359 -------------------------------------------------------------HILPLLKE-LLFHHEWVVK 376 (852)
T ss_dssp -------------------------------------------------------------HHHHHHHH-HHTCSSHHHH
T ss_pred -------------------------------------------------------------HHHHHHHH-HHCCCCHHHH
T ss_conf -------------------------------------------------------------99999999-8559988999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999995499855899998999999987520797146999999998755010398-8055899999999973079
Q 000565 809 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK-PFESYMERILPHVFSRLID 887 (1418)
Q Consensus 809 ~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~l~~li~~~~~-~l~~~l~~lL~~l~~klgD 887 (1418)
..++..|..+.+.... .+...+..++..+...+.|+|..|-..+..+++.+...++. ....++..+++.|+..+.|
T Consensus 377 ~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 377 ESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999863568---8998799999999987179988999999999999998861104789999999999999858
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 812438799999999973088300--06999997313---8991258999999999986530499998982027999997
Q 000565 888 PKELVRQPCSTTLDIVSKTYSVDS--LLPALLRSLDE---QRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAK 962 (1418)
Q Consensus 888 ~k~~vr~~a~~~L~~~~~~~~~~~--~l~~l~~~l~~---~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 962 (1418)
....||..+..+|..+.+..+... .++.++..+.. ....+....+++.+.... .. +. ..+.+.......+..
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~-~~-~~-~~~~~~~~~~~l~p~ 530 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA-DS-VG-HHLNKPEYIQMLMPP 530 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HH-HG-GGGCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HH-HH-HHHCCHHHHHHHHHH
T ss_conf 9888999999999999997367667679999999999998837479999999999999-97-42-431367899998899
Q ss_pred HCC-C--CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 720-1--2368878899999999997303790799999940899989999999841062258888999742110014688
Q 000565 963 LTP-L--VHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKS 1039 (1418)
Q Consensus 963 i~~-l--~~dks~~vR~aA~~~l~aly~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~ 1039 (1418)
+.. | +.|...++| .+..++..+....|.. +..++..+ ...+...++.. + ..+... ... ..
T Consensus 531 l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~-~~~~~~~i----~~~~~~~l~~~---l----~~~~~~-~~~---~~ 593 (852)
T 4fdd_A 531 LIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYCEPV----YQRCVNLVQKT---L----AQAMLN-NAQ---PD 593 (852)
T ss_dssp HHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGG-GHHHHHHH----HHHHHHHHHHH---H----HHHHHH-HHC---TT
T ss_pred HHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHH---H----HHHHHH-HCC---CC
T ss_conf 9999873330469999-9999999999997486-79889999----99999999999---9----999875-338---86
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 89999988888854545566777777888999988988887663000000137789888722357664310578887777
Q 000565 1040 SYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVS 1119 (1418)
Q Consensus 1040 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1119 (1418)
.++.++ ... +. . .-.......+.+
T Consensus 594 ~~~~~d-------~~~-------------------------~~-----~----------~l~~l~~l~~~l--------- 617 (852)
T 4fdd_A 594 QYEAPD-------KDF-------------------------MI-----V----------ALDLLSGLAEGL--------- 617 (852)
T ss_dssp TSCCCC-------THH-------------------------HH-----H----------HHHHHHHHHHHH---------
T ss_pred CCCCCC-------CHH-------------------------HH-----H----------HHHHHHHHHHHH---------
T ss_conf 668876-------119-------------------------99-----9----------999997899987---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 66667889988778988887675663222223346799999998666698998532236778899997899998520999
Q 000565 1120 SKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGND 1199 (1418)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~ 1199 (1418)
+ + ....+. .....++-+++.+.+.
T Consensus 618 ----------------~----------------~--------------------~~~~~~--~~~~~~~~l~~~l~~~-- 641 (852)
T 4fdd_A 618 ----------------G----------------G--------------------NIEQLV--ARSNILTLMYQCMQDK-- 641 (852)
T ss_dssp ----------------G----------------G--------------------GGHHHH--HTCCHHHHHHHHTTCS--
T ss_pred ----------------H----------------H--------------------HHHHHH--CCCCHHHHHHHHHCCC--
T ss_conf ----------------4----------------7--------------------699883--6771899999983899--
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99126999999999988308924489989999999999931889479999999999999726664311199999999999
Q 000565 1200 GSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 1279 (1418)
Q Consensus 1200 ~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~ 1279 (1418)
.++.|..+...+..+....+ ..+..++..++..+.+.+.+.+..+|..|+..+.+++...+..+.+|+..+++.|+..
T Consensus 642 -~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~ 719 (852)
T 4fdd_A 642 -MPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEI 719 (852)
T ss_dssp -SHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -84499999999999999816-8889879999999998769420689999999999999971176787899999999998
Q ss_pred HCCC--CHHHHHHHHHHHHHHHHHCC----H--HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 3699--28899999999999991129----0--4478752231026-631459899999999982139889995310369
Q 000565 1280 TKDA--VPKVSNEAEHCLTVVLSQYD----P--FRCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1350 (1418)
Q Consensus 1280 ~~d~--~~~V~~aA~~~l~~i~~~~~----p--~~~l~~l~~~l~s-~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~i~ 1350 (1418)
+.++ .+.+++.+..++..++..++ | .++++..+..|.. ++...+..+++.+..++...+ ..+..++..++
T Consensus 720 l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p-~~~~~~~~~~~ 798 (852)
T 4fdd_A 720 INRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP-SGVIQDFIFFC 798 (852)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG-GGTGGGHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCH-HHHHHHHHHHH
T ss_conf 57998872077889999999998688976755899999999986536660799999999999998691-86888899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH
Q ss_conf 99999824998779999999999999984110-120000258578999999
Q 000565 1351 PALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTI 1400 (1418)
Q Consensus 1351 p~l~~~~~d~~seVRkaAv~~lv~~~~~lg~~-~~p~l~~L~~s~~kll~~ 1400 (1418)
.+ +..+.+...+.+..-...+..+-..+|++ ...++..|++..+.-|..
T Consensus 799 ~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 799 DA-VASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HH-HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HH-HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 99-870689978999999999999987677201999987299999999998
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=198.36 Aligned_cols=209 Identities=11% Similarity=0.170 Sum_probs=141.8
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7899998520999991-269999999999883089244899899999999999318894799999999999997266643
Q 000565 1187 IPQILHLMCNGNDGSP-TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1265 (1418)
Q Consensus 1187 i~~ll~~l~~~~~~~~-~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~ll~~l~d~~~~vr~~aL~~L~~l~~~~~~~~ 1265 (1418)
+..++..+.+.+ + .-|..++..+..++...+. .+..++..++..++..+.+.+..+|..++.++..|++..+..|
T Consensus 599 ~~~l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 599 MGLFFRLLEKKD---SAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHHHHHHSTT---GGGTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHC
T ss_conf 999999974678---875799999999999999766-0999999999999988655667899999999999998745403
Q ss_pred CCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHCCCC------C-----HHHHHHH
Q ss_conf 1119999999999936992--889999999999999112904------4787522310266------3-----1459899
Q 000565 1266 EDSVEIVIEKLLHVTKDAV--PKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTE------D-----EKTLVTC 1326 (1418)
Q Consensus 1266 ~~~~e~~l~~ll~~~~d~~--~~V~~aA~~~l~~i~~~~~p~------~~l~~l~~~l~s~------~-----~~~~~~a 1326 (1418)
.+|+..+++.+++.+.+.. ..++..+..|+..++..++.. .+++.+...+... + +.++..+
T Consensus 675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~ 754 (861)
T 2bpt_A 675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAV 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11199999999997278655676659999999999998405089999999999999973678999758899999999999
Q ss_pred HHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHH-HHCCCCCCC-CCCHHHHHHH
Q ss_conf 999999982139--8899953103699999982499----8779999999999999984-110120000-2585789999
Q 000565 1327 INCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQ----SADVRKTVVFCLVDIYIML-GKAFLPYLE-RLNSTQLRLV 1398 (1418)
Q Consensus 1327 lk~l~~lv~~~~--~~~l~~~l~~i~p~l~~~~~d~----~seVRkaAv~~lv~~~~~l-g~~~~p~l~-~L~~s~~kll 1398 (1418)
++.+..+++..+ ++.+.++++.+++.+.+.+.|. +.+||++|..|+-.+...+ |+++.+|++ .+-+.-.+.+
T Consensus 755 l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l 834 (861)
T 2bpt_A 755 LDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRT 834 (861)
T ss_dssp HHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHH
T ss_conf 99999999998267788999999999999998748555786999999999999999882882488987267999999988
Q ss_pred H
Q ss_conf 9
Q 000565 1399 T 1399 (1418)
Q Consensus 1399 ~ 1399 (1418)
.
T Consensus 835 ~ 835 (861)
T 2bpt_A 835 R 835 (861)
T ss_dssp H
T ss_pred H
T ss_conf 5
Done!