Your job contains 1 sequence.
>000566
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQD
ELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGT
CCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSR
SVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDS
TICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTE
IACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKR
SAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSF
PFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHL
SLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCK
SHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDY
PGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSW
MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN
GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELR
NKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI
EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQS
IKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP
ISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL
EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKL
PQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK
IRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQ
SLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG
GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL
KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA
LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000566
(1416 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 1442 6.8e-252 5
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 2221 3.3e-230 1
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 1229 1.7e-220 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 389 1.9e-138 5
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 484 2.9e-90 5
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 433 2.6e-86 5
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 429 3.6e-84 7
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 433 1.2e-82 5
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 344 2.4e-81 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 388 1.5e-80 7
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 328 4.9e-80 6
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 383 6.0e-80 5
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 427 2.6e-79 5
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 424 9.8e-79 7
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 424 5.0e-78 7
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 437 1.2e-74 5
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 313 5.1e-74 6
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 426 1.5e-73 6
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 417 2.6e-73 5
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 427 6.0e-73 6
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 392 6.8e-73 7
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 297 1.4e-72 6
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 337 1.6e-71 5
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 290 1.2e-70 6
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 290 1.4e-70 6
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 322 1.4e-69 6
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 305 8.5e-69 6
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 349 2.1e-67 4
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 285 2.0e-66 6
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 341 2.8e-66 6
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 297 1.2e-65 6
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 297 6.9e-65 5
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 293 8.3e-65 6
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 297 1.3e-64 5
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 332 1.9e-64 5
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 278 3.9e-64 6
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 319 1.5e-63 4
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 319 1.5e-63 4
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 288 6.5e-63 6
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 367 7.5e-63 5
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 442 7.6e-60 2
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 286 1.4e-59 5
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 322 4.9e-58 6
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 280 8.6e-57 7
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 332 1.6e-55 5
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 302 2.0e-52 5
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 351 3.3e-52 6
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 286 2.8e-48 3
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 300 3.2e-48 4
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 249 3.3e-47 5
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 249 3.3e-47 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 242 2.0e-45 7
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 242 2.4e-45 7
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 296 4.8e-45 3
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 296 4.8e-45 3
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 243 4.9e-45 6
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 238 6.5e-45 7
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 248 8.1e-44 6
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 245 1.7e-43 6
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 242 4.7e-42 6
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 267 6.0e-42 4
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 332 2.9e-41 4
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 257 4.5e-41 4
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 263 3.7e-39 4
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 391 3.9e-39 4
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 232 4.2e-39 5
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 236 4.6e-39 4
TIGR_CMR|BA_1804 - symbol:BA_1804 "helicase, putative" sp... 266 8.1e-39 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 237 1.0e-38 5
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 258 5.2e-38 4
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 258 5.2e-38 4
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 255 5.7e-38 5
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 273 4.8e-37 5
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 255 6.5e-37 5
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 257 1.1e-36 5
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 300 3.0e-36 5
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 219 3.3e-36 5
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 304 3.8e-36 4
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 272 5.5e-36 4
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 237 8.4e-36 4
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 286 1.1e-35 4
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 278 1.5e-35 4
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 335 1.7e-35 6
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 294 1.9e-35 4
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 264 2.0e-35 6
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 242 2.3e-35 4
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 248 3.3e-35 5
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 312 6.0e-35 5
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 293 8.6e-35 5
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 240 1.1e-34 4
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 242 1.7e-34 5
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 197 2.0e-34 5
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 242 2.3e-34 5
ZFIN|ZDB-GENE-091113-61 - symbol:si:dkey-76p7.6 "si:dkey-... 272 3.2e-34 5
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 229 4.7e-34 5
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 227 7.0e-34 5
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 227 7.7e-34 5
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 241 8.7e-34 5
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 241 8.7e-34 5
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 241 8.7e-34 5
WARNING: Descriptions of 475 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 1442 (512.7 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
Identities = 324/616 (52%), Positives = 413/616 (67%)
Query: 575 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 634
+SA + +A+ PVV+S++S+ S GG+K +++ E +I Q A+Q ++Q
Sbjct: 488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540
Query: 635 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694
PN+EA PDGVL VPLLRHQRIALSWM QKETS CSGGILADDQGLGKT+STIALILK
Sbjct: 541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600
Query: 695 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 752
ER P+ E+ K+++ L + E ++ +G + ++ +++ N + + V
Sbjct: 601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656
Query: 753 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 812
+ GRPAAGTLVVCPTSV+RQWA+EL KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct: 657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716
Query: 813 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 872
+TT+SIVSMEVPKQPL + GSK+KK
Sbjct: 717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774
Query: 873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 932
++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct: 775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829
Query: 933 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
DDLYSYFRFL+YDP++ Y FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG+LLDG+
Sbjct: 830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGK 889
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
PII+LPPK I L++VDFT EERDFYS+LE SR QF+EYA AGTVKQNYVNILLMLLRLR
Sbjct: 890 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 949
Query: 1053 QACDHPLLVKGFDSNSLLRSSVEMAKK-LPQERQMYLLN-CLEAS----LAICG--ICND 1104
QACDHPLLV G + + SSV +AKK + + + + C +A ++CG C
Sbjct: 950 QACDHPLLVNG-EYSFTWESSVGLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQ 1008
Query: 1105 PPEDAVVSICGHVFCNQCICE-RLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 1163
+ + H C C RLT TR + ++ + +AT +NSLS
Sbjct: 1009 CIYERLTGDSNH--CPFANCNVRLTISSLSSKTR---LDDAMPDMQERAT-SNSLSPCSD 1062
Query: 1164 GQEIPTDYSDSKLVEA 1179
+++P Y SK+ A
Sbjct: 1063 -EDLP--YGSSKIKAA 1075
Score = 697 (250.4 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
Identities = 139/164 (84%), Positives = 152/164 (92%)
Query: 1253 SID-SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP 1311
S+D IK+ GEKAIVFSQWTKML+LLEASL S IQYRRLDGTMSV ARDKAV+DFNTLP
Sbjct: 1114 SVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLP 1173
Query: 1312 EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
EV+VMIMSLKAASLGLNMVAACHVL+LDLWWNPTTEDQAIDRAHRIGQTRPV+V+R TVK
Sbjct: 1174 EVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVK 1233
Query: 1372 NTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415
+TVEDRILALQQKKR MVASAFGEDE G +Q+ LTV+DL+YLFM
Sbjct: 1234 DTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLFM 1277
Score = 317 (116.6 bits), Expect = 2.0e-44, Sum P(4) = 2.0e-44
Identities = 90/254 (35%), Positives = 136/254 (53%)
Query: 1072 SSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADD 1131
SSV +AKK Q +ASLAICGICND PEDAV S+CGHVFC QCI ERLT D
Sbjct: 968 SSVGLAKKQIQS---------DASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDS 1018
Query: 1132 NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSK 1191
N CP NC +RL++SS+ SK L++++ Q + + S + S E + Y SSK
Sbjct: 1019 NHCPFANCNVRLTISSLSSKTRLDDAMPDMQ-------ERATSNSLSPCSDEDLPYGSSK 1071
Query: 1192 IKAALEVLQSLAKPRGNTVTNH-SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAA 1250
IKAALE+LQSL K T +N S ++G P N+ D ++ E + +
Sbjct: 1072 IKAALEILQSLPKAHDLTDSNQISENREYSGLSITPV-KNEGMSVDVPIKVAGEKAIVFS 1130
Query: 1251 KCSIDSIKLGGEKAIVFS--QWTKMLDLLEASLKDSSIQ-YRRL-DGTMSVFARDKAVKD 1306
+ + + L E ++V S Q+ ++ + + +D ++Q + L + T+ + + A
Sbjct: 1131 QWT-KMLNLL-EASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLG 1188
Query: 1307 FNTLPEVSVMIMSL 1320
N + V+++ L
Sbjct: 1189 LNMVAACHVLMLDL 1202
Score = 154 (59.3 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
Identities = 50/130 (38%), Positives = 66/130 (50%)
Query: 18 EFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSE 77
EF DD +ID++TL IL+E+ PD + S +LS S DEL +D N
Sbjct: 24 EFEDDDE-TIDIETLYRILDEK--PDSAEGSQENLSPVGSSADEL-KD-SQLLNGSFDEH 78
Query: 78 ISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCS 137
+ E+G L P SP TCSAS DWF+ + G E+ G+SQ E CS
Sbjct: 79 VK-MEAG--------LSP-----SPAHTCSASLKDWFSLSQGEQPVETCGVSQSEMTSCS 124
Query: 138 TASSFSEGDG 147
+SSFS+ DG
Sbjct: 125 ISSSFSDPDG 134
Score = 134 (52.2 bits), Expect = 8.6e-250, Sum P(5) = 8.6e-250
Identities = 40/111 (36%), Positives = 52/111 (46%)
Query: 101 SPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFG 160
SP TCSAS DWF+ + G E+ G+SQ E CS +SSFS+ DG N + F
Sbjct: 88 SPAHTCSASLKDWFSLSQGEQPVETCGVSQSEMTSCSISSSFSDPDG-------NMMAFN 140
Query: 161 VLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 211
+ S D + +D S S +T FD G YG +G SS
Sbjct: 141 PVNCDVD-----TVSKQDDKIID-SKSMLTPYFDNVTG-YGVGLGANHNSS 184
Score = 105 (42.0 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 496 PSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 554
P T N + D + + E I+ R + S S ES+QS+SS+C S DD+ D+CI+E
Sbjct: 426 PVTQNNEYKDFQIQQGDREYIQPRGIDSQFSNASFESVQSHSSECISDSDDDSDVCIIEP 485
Query: 555 ISQPARSNQSLVLGKTLSMNRSACSNHS 582
Q A ++ L + + + + +H+
Sbjct: 486 YGQSAIPHRPLAMKMPVVSSEYSTVSHN 513
Score = 92 (37.4 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
Identities = 58/232 (25%), Positives = 95/232 (40%)
Query: 231 SSHNVASTDSTICHGSEIISD--DDYYS-AMPCYINTGDTIFGD--PSS---FNFQHLLS 282
++HN +S S + S +SD D+Y S A CY NT T D P+S F F+ +
Sbjct: 179 ANHN-SSAMSVFFNNSNSLSDSADNYVSSAQDCY-NTSGTSLSDHTPNSVQNFAFEFFPN 236
Query: 283 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKR---QCEDS 339
EE D E + + +S ++ + G GS+ + P ID+ A+ + E +
Sbjct: 237 KEEAVN---DVESGVSESQSDGASRMIFDRHGRVDNGSLERKPPIDFSSARGISFKFESN 293
Query: 340 KNGLPI----YGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWST 395
+ P Y + S++ D R P YS S V K E + +S+
Sbjct: 294 PSVSPACVKPYNSFDSHLADSDLDR---PNNYSCSFQDNKTVHVKVKPEAESEKV-VYSS 349
Query: 396 VSDSVEPIDEAV--GRNSSYHDGCNSFPFK-----DSGQSFIGLSPSLLSQN 440
V D+A G + + G +S + G S++ +L SQ+
Sbjct: 350 VPGEFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQD 401
Score = 53 (23.7 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 671 CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL--D 728
C GG +D I T+ IL E+P S +N + + + DE + +NG +
Sbjct: 19 CDGGFEFEDDDETIDIETLYRILDEKPDSAEGSQENLSPVGS-SADELKDSQLLNGSFDE 77
Query: 729 LVKQES 734
VK E+
Sbjct: 78 HVKMEA 83
Score = 52 (23.4 bits), Expect = 5.1e-65, Sum P(2) = 5.1e-65
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQP 42
ADDQGL + T+ IL+E +P
Sbjct: 583 ADDQGLGKTVSTIALILKERSKP 605
Score = 46 (21.3 bits), Expect = 4.5e-237, Sum P(4) = 4.5e-237
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 220 YVDVPYTDAEVSSHNVASTDSTICHGSEIISDDD 253
Y+ D++ S+ AS +S H SE ISD D
Sbjct: 445 YIQPRGIDSQFSN---ASFESVQSHSSECISDSD 475
Score = 41 (19.5 bits), Expect = 1.6e-246, Sum P(5) = 1.6e-246
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 393 WSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQ 427
WS S S + + SY + P +DSG+
Sbjct: 370 WSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSGK 404
Score = 37 (18.1 bits), Expect = 8.4e-80, Sum P(4) = 8.4e-80
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 733 ESDYCRVVPNGSSA 746
+SD C + P G SA
Sbjct: 477 DSDVCIIEPYGQSA 490
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 478/853 (56%), Positives = 595/853 (69%)
Query: 582 SVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASA 641
SVA G S + SD P + G+G ++ +DERLI Q A+Q ++QP +E
Sbjct: 163 SVAHGTSASPSHFNGLSD----P-MHRNGIGEERNSENDERLIYQAALQELNQPKSEVDL 217
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE-RPPSF 700
P G+L+VPL++HQ+IAL+WM QKET+SLHC GGILADDQGLGKT+STIALILK+
Sbjct: 218 PAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKL 277
Query: 701 RTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKG--- 757
++++ ++ E L+LD +D N + K ES NGS + +++AKG
Sbjct: 278 KSKNSGNQEAEALDLDADDES--ENAFE--KPESK----ASNGSGVNGDSGIKKAKGEEA 329
Query: 758 ----------RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 807
RPAAGTL+VCP SV+RQWA EL KVT + LSVL+YHG +RTKDP ELA
Sbjct: 330 STSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELA 389
Query: 808 KFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGS 867
K+DVV+TTY+IVS EVPKQPL L + S
Sbjct: 390 KYDVVMTTYAIVSNEVPKQPL-VDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKK--S 446
Query: 868 KQKKGPD--GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSG 925
K+KKG + G D +G LAKVGWFRVVLDEAQ+IKNHRTQVARAC GLRAKRRWCLSG
Sbjct: 447 KKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSG 506
Query: 926 TPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 985
TPIQN IDDLYSYFRFL+YDP+AVYKSFC IK PIS+N ++GYKKLQAVL+ IMLRRTK
Sbjct: 507 TPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTK 566
Query: 986 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 1045
GTLLDG+PIINLPPK I L QVDF+ EER FY +LE +SR QFK YAAAGT+ QNY NIL
Sbjct: 567 GTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANIL 626
Query: 1046 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDP 1105
LMLLRLRQACDHP LVK ++S+S+ + S E KKLP+E + LL+ LE+S IC +C+DP
Sbjct: 627 LMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVKKLPKEDLVSLLSRLESS-PICCVCHDP 685
Query: 1106 PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQ 1165
PED VV++CGH+FC QC+ + +T D++ CP C+ +L+ VFSK+TL + ++ G
Sbjct: 686 PEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKSTLRSCVAD-DLGC 744
Query: 1166 EIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICC 1225
D S K V + ++SSKIKA L++LQSL+ N T++S + NG +
Sbjct: 745 SSSEDNSHDKSV----FQNGEFSSSKIKAVLDILQSLS----NQGTSNSTQ---NGQMA- 792
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKD 1283
S+ D D+ D++ I K S+ S G K I+FSQWT MLDL+E SL +
Sbjct: 793 ---SSSQQPNDD-DDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIE 848
Query: 1284 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1343
+SI++RRLDGTMS+ ARD+AVK+F+ P+V VMIMSLKA +LGLNM+AACHV+LLDLWWN
Sbjct: 849 NSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWN 908
Query: 1344 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1403
PTTEDQAIDRAHRIGQTRPV+V R+T+KNTVEDRILALQ++KR+MVASAFGED G T
Sbjct: 909 PTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSAT 968
Query: 1404 RLTVDDLNYLFMV 1416
RLTVDDL YLFMV
Sbjct: 969 RLTVDDLKYLFMV 981
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 1229 (437.7 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 252/475 (53%), Positives = 321/475 (67%)
Query: 758 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 817
RPAAGTL+VCP SV+RQWA EL KV+ + LSVLVYHGS+RTKDP ELA++DVV+TTY+
Sbjct: 411 RPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYA 470
Query: 818 IVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLL 877
IV+ E P + L L + + +K +
Sbjct: 471 IVTNEAPNKFL-VDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTS 529
Query: 878 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 937
+ GPL KVGWFR+VLDEAQ+IKN+RTQ+AR+C LRAKRRWCLSGTPIQN IDDLYS
Sbjct: 530 SEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYS 589
Query: 938 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINL 997
YFRFLRYDP+AVYKSF S IKVPIS+N +GYKKLQAVL+ IMLRRTKGTLLDG+PIINL
Sbjct: 590 YFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINL 649
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
PPKV+ L QVDF+ ER FY +LE +SR QFK YA AGT+ QNY NILL+LLRLRQACDH
Sbjct: 650 PPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDH 709
Query: 1058 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHV 1117
P LVK ++S+ + + S ++LP+E + L+N LE+S AIC CN+PPE VV++CGH+
Sbjct: 710 PQLVKRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHI 769
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 1177
FC +C+ E +T D+N CP CK +L+ VFS+++L N S + D +
Sbjct: 770 FCYECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVF 829
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 1232
+ + SSKIKA L++LQSL++P + +S +H S P D +D+
Sbjct: 830 QKRD-----FCSSKIKAVLDILQSLSQPD----SPNSAQHGQMPSSSRPYDDDDV 875
Score = 630 (226.8 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 136/228 (59%), Positives = 168/228 (73%)
Query: 1189 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 1248
SSKIKA L++LQSL++P + +S +H S P D +D+ T+ E +
Sbjct: 836 SSKIKAVLDILQSLSQPD----SPNSAQHGQMPSSSRPYDDDDV----TIV------EPM 881
Query: 1249 AAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN 1308
S S G K I+FSQWT MLDL+E + +S I++RRLDGTMS+ ARD+AVK+F+
Sbjct: 882 RLHSSSPS--QGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFS 939
Query: 1309 TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRL 1368
P+V VM+MSLKA +LGLNMVAACHV+LLDLWWNPTTEDQAIDRAHRIGQTRPV+V R+
Sbjct: 940 KKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRI 999
Query: 1369 TVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416
T+K+TVEDRIL LQ++KR MVASAFGE+ G TRLTVDDL YLFMV
Sbjct: 1000 TIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATRLTVDDLKYLFMV 1047
Score = 310 (114.2 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 63/116 (54%), Positives = 85/116 (73%)
Query: 607 PLTGLGGMKSKA--SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQK 664
P+ GG + + +DERL+ Q A+Q ++QP E+ P G L+VPL+RHQ+IAL+WM QK
Sbjct: 236 PMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQK 295
Query: 665 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNKRQLETLNLDEED 719
ETSS +C GGILADDQGLGKT+STIALILK++ S ++E K++ E L LD +D
Sbjct: 296 ETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADD 351
Score = 63 (27.2 bits), Expect = 1.9e-194, Sum P(3) = 1.9e-194
Identities = 34/120 (28%), Positives = 52/120 (43%)
Query: 20 ADDQGLSIDMDTLLGILEEE-----KQPDRVKSSPGDLSL-RNLSQDELVQDVGSHSNLQ 73
ADDQGL + T+ IL+++ K K L L + D + GSH +
Sbjct: 308 ADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSHVKPE 367
Query: 74 LQ----SEISGAESGGLGDS-SSQLEPTEQKCSPLQTCSASFSDWFNQNSGTC--CPESV 126
L+ SE S + G ++ SS +E E + + + +F W +GT CP SV
Sbjct: 368 LKVSSNSETSVLSACGNDENDSSDMEKAEDE--EANSSTRAFQ-WKRPAAGTLIVCPASV 424
Score = 42 (19.8 bits), Expect = 3.2e-192, Sum P(3) = 3.2e-192
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 504 LDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 554
LD E A+ ++ S LK+S S S S C + +D D+ ED
Sbjct: 347 LDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAED 397
Score = 42 (19.8 bits), Expect = 3.8e-59, Sum P(3) = 3.8e-59
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 686 ISTIALILKERPPSFRTEDDNKRQLET 712
++T A++ E P F ++D + T
Sbjct: 466 VTTYAIVTNEAPNKFLVDEDENDEKNT 492
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 389 (142.0 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 74/113 (65%), Positives = 88/113 (77%)
Query: 874 DGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 932
DG L+ G L +V W RVVLDEA +IKNHRT +A+AC+ LRAKRRWCL+GTPI+N +
Sbjct: 196 DGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKV 255
Query: 933 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 985
DDLYSYFRFLRY P+A+ SF IK PI K P+ GYKKLQA+L+ IMLRRTK
Sbjct: 256 DDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 353 (129.3 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 67/184 (36%), Positives = 112/184 (60%)
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
IML++ +E FY +LE+NSR +F+EYAA GT+ ++ +L+MLLRLRQAC+HP LV
Sbjct: 302 IMLRRT----KEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLV 357
Query: 1062 KGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1121
G+ + R + + P+E + L+ L+ S C +C+DPP+D VV++CGHVFC +
Sbjct: 358 NGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYE 417
Query: 1122 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL--VEA 1179
C+ + D+N CP NC +L VF+++ + + ++ ++ + ++ +E
Sbjct: 418 CVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYDDPEDKNALVASRRVYFIEN 477
Query: 1180 PSCE 1183
PSC+
Sbjct: 478 PSCD 481
Score = 332 (121.9 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 1299 ARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358
+R KD + V M+MSLKA +LGLNMVAA HV+LLDLWWNPTTEDQAIDRAHRIG
Sbjct: 493 SRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIG 552
Query: 1359 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE-------DETGGQQTRLTV 1407
QTR V+V R+ +KNTVE+RIL L ++KR +VASA GE D T +++R++V
Sbjct: 553 QTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISV 608
Score = 257 (95.5 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 620 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 679
+ER+I Q A+Q + QP E P GVL VPL+RHQ+IAL+WM +KE S HC GGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 680 QGLGKTISTIALILKERPPSFRTEDDNKRQ 709
QGLGKTISTI+LIL ++ S + K Q
Sbjct: 83 QGLGKTISTISLILLQKLKSQSKQRKRKGQ 112
Score = 242 (90.2 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 747 KSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 806
KS + + KG+ + GTL+VCP SV++QWA E++ KV+ + LSVLV+HGS RTKDP E+
Sbjct: 101 KSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEI 160
Query: 807 AKFDVVITTYSIVSMEVPKQPL 828
A +DVV+TTY+IV+ EVP+ P+
Sbjct: 161 AIYDVVMTTYAIVTNEVPQNPM 182
Score = 43 (20.2 bits), Expect = 6.8e-95, Sum P(4) = 6.8e-95
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 20 ADDQGLSIDMDTL-LGILEEEKQPDRVKSSPGDLS 53
ADDQGL + T+ L +L++ K + + G S
Sbjct: 80 ADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNS 114
Score = 39 (18.8 bits), Expect = 8.4e-108, Sum P(5) = 8.4e-108
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 1185 VWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHS 1218
+W+N + A++ + + R TVT +++++
Sbjct: 534 LWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNT 567
Score = 39 (18.8 bits), Expect = 4.9e-68, Sum P(4) = 4.9e-68
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1213 HSLRHSFNGSICCPGDSNDLHGGDTLDNI 1241
+++ +SF+ I P D LHG L I
Sbjct: 270 YAMCNSFHQRIKAPIDKKPLHGYKKLQAI 298
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 484 (175.4 bits), Expect = 2.9e-90, Sum P(5) = 2.9e-90
Identities = 104/304 (34%), Positives = 172/304 (56%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
P + W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+QN +++ YS +FLR
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Query: 944 YDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
P++ + SF +P+S N K+ + +LK ++LRRTK T +DG+PI+ LPPK
Sbjct: 587 IKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKT 646
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+ + D + E +FY+ L+ ++ Q ++Y GT+ +Y ++L++LLRLRQAC HP L+
Sbjct: 647 AVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLI 706
Query: 1062 KGFDSNSLLRSSVEMAKKLPQERQMY--LLNCLEASLAI-CGICNDPPEDAVVSI-CGHV 1117
++ S + AK Q+Y +N L+ + C +C D + ++ + CGH
Sbjct: 707 VAREAAVDDNDSFQ-AKNRAIYNQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHF 765
Query: 1118 FCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKATLNNSLSQRQPGQEIPTDYS 1172
C +C+ +T+ ++ Q N + S+ + ++ L+ +L +R G D +
Sbjct: 766 LCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVD-A 824
Query: 1173 DSKL 1176
D+KL
Sbjct: 825 DNKL 828
Score = 352 (129.0 bits), Expect = 2.9e-90, Sum P(5) = 2.9e-90
Identities = 66/153 (43%), Positives = 104/153 (67%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
+K ++FSQ+ L+L + I+Y G +S R++A+ +F P V V+++SLK
Sbjct: 884 DKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLK 943
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A ++GLN+ A HV++LD +WNP E+QA+DRAHRIGQ +PV++LR+ NT+E+R+LAL
Sbjct: 944 AGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLAL 1003
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
Q +KRE++ SA GE + +RL +L++LF
Sbjct: 1004 QDRKRELIDSALGEKGLR-EISRLNTKELSFLF 1035
Score = 136 (52.9 bits), Expect = 2.9e-90, Sum P(5) = 2.9e-90
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 621 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 680
E L + Q ++ P P G++ L+ HQ+ L W+ + E SS GGILADD
Sbjct: 362 EELFKDLDEQLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSK--KGGILADDM 418
Query: 681 GLGKTISTIALILKERPPSFRT 702
GLGKT+ +AL++ RPP ++
Sbjct: 419 GLGKTVQALALLVT-RPPESKS 439
Score = 124 (48.7 bits), Expect = 2.9e-90, Sum P(5) = 2.9e-90
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAKFDVVITTYSIVSM 821
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L +D+V+TTY++++
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAY 502
Query: 822 E 822
E
Sbjct: 503 E 503
Score = 44 (20.5 bits), Expect = 8.2e-11, Sum P(4) = 8.2e-11
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 1245 NEKIAAKCSIDSIKLGGEKAI---VFSQWTKMLDLLEASLK 1282
NE I+ KCS+ + E+ + +F +++ M +++A K
Sbjct: 787 NENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDADNK 827
Score = 43 (20.2 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 1140 KIRL-SLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 1198
K+R ++S + K +N L RQ G +I TD P W S+KI+ AL
Sbjct: 827 KLRTENISELLPKQ-YSNILENRQMGMKIFTD---------PKH---WTTSTKIEKALNA 873
Query: 1199 LQSLAK 1204
++ + K
Sbjct: 874 VKEIIK 879
Score = 42 (19.8 bits), Expect = 1.7e-80, Sum P(5) = 1.7e-80
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 701 RTEDDNKRQLETL--NLDEE 718
+ +DD ++QLE L +LDE+
Sbjct: 352 KVQDDQQQQLEELFKDLDEQ 371
Score = 38 (18.4 bits), Expect = 2.9e-90, Sum P(5) = 2.9e-90
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 330 LDAKRQCEDSKNGLPIYGNSLSN 352
LD K +KN P Y +S S+
Sbjct: 20 LDDKHNIGFNKNNTPDYSSSASS 42
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 433 (157.5 bits), Expect = 2.6e-86, Sum P(5) = 2.6e-86
Identities = 94/247 (38%), Positives = 139/247 (56%)
Query: 883 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 942
GP +K W+RV++DEAQ IKN TQ A AC L RWC+SGTP+ N +++L+S +FL
Sbjct: 615 GPTSK--WYRVIIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFL 672
Query: 943 RYDPFAVYKSFCSMIKVPISKN----PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
R P+A F P+ N K +L+ +LK ++LRRTK + +DG+PI ++P
Sbjct: 673 RIRPYANLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIP 732
Query: 999 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
P+ F+++E + Y LE ++ QF Y AGTV +NY NIL++LLRLRQAC HP
Sbjct: 733 PRFSEKVHAVFSEDELELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHP 792
Query: 1059 LLVKGFDSNSLLRSS--VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CG 1115
L+ F S L +S V+ Q + + C +C D ++ ++ CG
Sbjct: 793 HLITDF-SVKLNEASEGVDFIANAEQFSNEVVARLRDNENLECPVCIDAVDNPIIFFPCG 851
Query: 1116 HVFCNQC 1122
H C++C
Sbjct: 852 HGTCSEC 858
Score = 371 (135.7 bits), Expect = 2.6e-86, Sum P(5) = 2.6e-86
Identities = 78/154 (50%), Positives = 102/154 (66%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
EK I+FSQ+T +LDLLE + +YRR DG+M R+ AV DF P VM++SLK
Sbjct: 1021 EKIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKVMLVSLK 1080
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A + GLN+VAA HV++ D +WNP E+QA+DRAHRIGQ R V V R+ V TVEDRI+ L
Sbjct: 1081 AGNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIGQLREVHVHRILVPETVEDRIIEL 1140
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415
Q KKR ++ A E E+ RL+ +L YLF+
Sbjct: 1141 QDKKRAIIDGALDEKESKNI-ARLSTRELGYLFV 1173
Score = 141 (54.7 bits), Expect = 2.6e-86, Sum P(5) = 2.6e-86
Identities = 35/71 (49%), Positives = 43/71 (60%)
Query: 634 QPNAEASAPD-----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIST 688
+P+A+ SA D L PLL HQ++ L+WM KE GGILADD GLGKTI
Sbjct: 450 RPDADLSAKDREGTPAALKYPLLDHQKLGLAWMRSKEECDQ--KGGILADDMGLGKTIQA 507
Query: 689 IALILKERPPS 699
IAL++ RP S
Sbjct: 508 IALMVS-RPSS 517
Score = 109 (43.4 bits), Expect = 2.6e-86, Sum P(5) = 2.6e-86
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
TL++ P ++++QW E+ ++ L V + HG +L K+DVV+TT+ +++ E
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLASE 583
Query: 823 VPK 825
+ +
Sbjct: 584 LKR 586
Score = 53 (23.7 bits), Expect = 2.6e-86, Sum P(5) = 2.6e-86
Identities = 37/120 (30%), Positives = 50/120 (41%)
Query: 467 DGSSSRSPIDGRHLS-LNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLL 525
DG S +D L L L+G Q Q ++ +KE E E + A HL+
Sbjct: 169 DGLDSEFDVDDDILGILGLDG--QDMRALQEE--QRRAEQWLKERKEQERRDAEFARHLM 224
Query: 526 KLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT---LSMNRSACSNHS 582
SP S Q+ S ++ P L I Q + SN SL LG LS S +NH+
Sbjct: 225 SASP-SAQTLSYISRAE-PPTPTRENLPSIPQFSSSN-SLFLGTRPAGLSAAPSLNANHA 281
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 429 (156.1 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 96/283 (33%), Positives = 157/283 (55%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
++ W+R+VLDEA +IK+ +TQ A+A + L + RWCL+GTP+QN ++DLYS FL +P
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLK 1005
+ + + +I+ P +G K ++A+L+ +MLRRTK T +G I+ LPP + +
Sbjct: 873 WCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVI 932
Query: 1006 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-- 1063
+ + ++ ERDFY+ L S+ QF ++ A G V NY NIL +LLRLRQ C+HP LV
Sbjct: 933 ECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRA 992
Query: 1064 -----FDSNSLLRSSVE-----MAKKLPQERQM--YLLNCLEASLAICGICNDPPEDAVV 1111
D +SL R ++ +++ P + + + + + C IC + +D V+
Sbjct: 993 DSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVL 1052
Query: 1112 SICGHVFCNQCICERLTADD-NQCPTRNCKIRLSLSSVFSKAT 1153
+ C H C +C+ + CP C+ L + + S T
Sbjct: 1053 TPCAHRMCRECLLTSWRSPSCGLCPI--CRTILKRTELISCPT 1093
Score = 379 (138.5 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 85/196 (43%), Positives = 122/196 (62%)
Query: 1223 ICCPGDSNDLHGGDTLDNISDENEKIAA--KCSIDSIKLGG--EKAIVFSQWTKMLDLLE 1278
I CP DS + D + N E+ K++ KC ++ IK G EK+IVFSQWT LDLLE
Sbjct: 1089 ISCPTDS--IFRVDVVKNWK-ESSKVSELLKC-LEKIKKSGSGEKSIVFSQWTSFLDLLE 1144
Query: 1279 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338
L+ ++ R DG ++ R+K +K+FN + ++++MSLKA +GLN+ AA V L+
Sbjct: 1145 IPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLM 1204
Query: 1339 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1398
D WWNP E+QAI R HRIGQ R V V R VK+TVE+R+ +Q +K+ M+A A ++E
Sbjct: 1205 DPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEV 1264
Query: 1399 GGQQTRLTVDDLNYLF 1414
+ RL ++L LF
Sbjct: 1265 --RSARL--EELKMLF 1276
Score = 143 (55.4 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 754 QAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVI 813
+AKG GTL++CP ++L QW +EL + ++SVLVY+G RT D +A DVV+
Sbjct: 738 KAKG----GTLIICPMALLSQWKDELETH-SKPDTVSVLVYYGGDRTHDAKAIASHDVVL 792
Query: 814 TTYSIVS 820
TTY +++
Sbjct: 793 TTYGVLT 799
Score = 92 (37.4 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 721
+Q T++ GGILAD GLGKT+ TIALIL RP E+++ + +N D+ N
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILA-RPGRGNPENEDVLVAD-VNADKR-NR 727
Query: 722 IQVN-GLDLVKQESDYCRVVP 741
+++ L VK + + P
Sbjct: 728 KEIHMALTTVKAKGGTLIICP 748
Score = 53 (23.7 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 37/140 (26%), Positives = 59/140 (42%)
Query: 432 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEI-----CDGSSSRSPIDGRHLSLNLNG 486
+ P LL +N VV AKEE E++I++S + + CD + +D NL
Sbjct: 142 VEPELLVENLVV-AKEE-EEMIVDSIEDSVVEIVSTASGCDCNVKVEVVDPELCVDNLVV 199
Query: 487 SRQYFPYAQPSTLNKKELDGVKEDMEA-EIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 545
++ A + E D E ++K + KL +S+ N + K V
Sbjct: 200 VKEEEMIADSIAESVVETVSRGLDYECVDVKVKEEPDLGTKLEEDSVFPNVLEKKDEV-- 257
Query: 546 EPDICILEDISQPARSNQSL 565
I +LED QP+ N+ L
Sbjct: 258 ---IKVLED--QPSEINKKL 272
Score = 40 (19.1 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 638 EASAPDGVLAVPLLRHQRIALSWMVQKE 665
E AP L L +Q+ AL WM + E
Sbjct: 605 EMEAPS-TLTCNLRPYQKQALYWMSESE 631
Score = 40 (19.1 bits), Expect = 2.7e-28, Sum P(5) = 2.7e-28
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 679 DQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCR 738
+ G + + I IL RP R + + + +L L+ +QV + + E D+
Sbjct: 888 ENGDPRGLKLIKAIL--RPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYT 945
Query: 739 VVPNGSSAKSFNFVEQAK 756
+ S + FV Q K
Sbjct: 946 ALFKRSKVQFDQFVAQGK 963
Score = 39 (18.8 bits), Expect = 3.6e-84, Sum P(7) = 3.6e-84
Identities = 23/121 (19%), Positives = 48/121 (39%)
Query: 13 VSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
V+ +F D+ L I T + I + V S + + ++DE++ D + N
Sbjct: 26 VADTPDFIDESSLVIRTTTGVRISALPAEQSLVDSDGSNSEVTLPAKDEVISDGFTCVNK 85
Query: 73 QLQSEISGAESG-GLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQF 131
++ S E +G+ +E ++ + + S + + SG C V + +
Sbjct: 86 EIVESDSFREQNLEIGEPDLDVE-NRKEAMIIDSIENSVVEIVSSASGDDCNVKVEVVEP 144
Query: 132 E 132
E
Sbjct: 145 E 145
Score = 39 (18.8 bits), Expect = 2.6e-49, Sum P(7) = 2.6e-49
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1186 WYNSSKIKAALEVLQSLAK 1204
W SSK+ L+ L+ + K
Sbjct: 1105 WKESSKVSELLKCLEKIKK 1123
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 433 (157.5 bits), Expect = 1.2e-82, Sum P(5) = 1.2e-82
Identities = 92/263 (34%), Positives = 148/263 (56%)
Query: 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
+ PL V W RVVLDE ++N ++A L+++RRW LSGTPIQN++ DL+ F
Sbjct: 483 SSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKDLFMLLSF 542
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
L+ PF V + + +I+ P++ G K LQA++K I LRRTK + + G ++ LP +
Sbjct: 543 LKLKPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTLVQLPERR 602
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+ ++ V + ER+ Y +++ ++ Y GT NY ++L +L+RLRQ C HP LV
Sbjct: 603 VFVQYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCCCHPSLV 662
Query: 1062 KGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1121
+ + + + E+ ++L Q+ + +LN S C IC D V++ C HVFC
Sbjct: 663 GNYTAADVPGTPSELRERLIQKITL-VLN--SGSDEECAICLDSLRQPVITYCAHVFCRP 719
Query: 1122 CICERLTADDNQ--CPTRNCKIR 1142
CICE + ++ Q CP +I+
Sbjct: 720 CICEVIRSEKEQAKCPLCRAQIK 742
Score = 330 (121.2 bits), Expect = 1.2e-82, Sum P(5) = 1.2e-82
Identities = 73/195 (37%), Positives = 123/195 (63%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE----KAIVFSQWTKMLDLLEASL 1281
PG+ + DT +N ++ +A ++ +KL E K++V SQ+T LD+LE +L
Sbjct: 750 PGEQAETRS-DTGENWRSSSKALALMSNL--LKLRNEDPTVKSMVVSQFTGFLDVLEVAL 806
Query: 1282 KDSSIQYRRLDGTMSVFARDKAVKDF-NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLD 1339
++ + RLDG++ AR KA++DF ++ P ++M++SLKA +GLN+ AA V ++D
Sbjct: 807 REYGFSFTRLDGSLIQRARAKAIEDFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVMD 866
Query: 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG-EDET 1398
WNP EDQ +DR HR+GQ+R V + + VK++VE+ ++ +Q+KK+E+V AFG ++
Sbjct: 867 PAWNPAAEDQCVDRCHRLGQSRDVVITKFIVKDSVEENMVKIQKKKQELVDKAFGVKNSQ 926
Query: 1399 GGQQTRLTVDDLNYL 1413
+Q R +DD+ L
Sbjct: 927 DAKQAR--IDDIRAL 939
Score = 141 (54.7 bits), Expect = 1.2e-82, Sum P(5) = 1.2e-82
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 733 ESDYCRVVPNGSSAKSFNFVEQ-AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 791
E +VVP+ K + + + G A TL+VCP SVL W ++ + + ++ V
Sbjct: 387 ECSSSQVVPSKKCVKKSSVPSEISAGSVARATLIVCPLSVLSNWLDQFEQHIRTDVTVKV 446
Query: 792 LVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
+Y+GS R + L++ DVV+TTY+++S +
Sbjct: 447 YLYYGSERNRSVSLLSEQDVVLTTYNVLSSD 477
Score = 87 (35.7 bits), Expect = 1.2e-82, Sum P(5) = 1.2e-82
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILADD GLGKT++TIALI+
Sbjct: 275 GGILADDMGLGKTLTTIALIV 295
Score = 70 (29.7 bits), Expect = 1.2e-82, Sum P(5) = 1.2e-82
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 609 TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 668
T L + A + + + + + P + PLL HQ+ ALSWM +E S+
Sbjct: 185 TKLSAIPLSAEELKNAFDKLFDDLMEDKTKEMEPAEAVCTPLLSHQKQALSWMSSRENSN 244
Score = 52 (23.4 bits), Expect = 9.1e-81, Sum P(5) = 9.1e-81
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 88 DSSSQLEPTEQKCSPLQTCSASFSDWFN--QNSGTCCP 123
D + ++EP E C+PL + W + +NS P
Sbjct: 211 DKTKEMEPAEAVCTPLLSHQKQALSWMSSRENSNDLPP 248
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 344 (126.2 bits), Expect = 2.4e-81, Sum P(5) = 2.4e-81
Identities = 74/158 (46%), Positives = 101/158 (63%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
G KAIVFSQ+T LDL+ +L + +L G+M++ ARD A+ F P+ V +MS
Sbjct: 679 GSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMS 738
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LKA + LN+ A HV ++D WWNP E QA DR HRIGQ +P+ V+R ++NTVE+RIL
Sbjct: 739 LKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 798
Query: 1380 ALQQKKREMVASAFGEDETGGQQT---RLTVDDLNYLF 1414
LQ KK+E+V F E GG Q +LT +D+ +LF
Sbjct: 799 RLQ-KKKELV---F-EGTVGGSQEAIGKLTEEDMRFLF 831
Score = 242 (90.2 bits), Expect = 2.4e-81, Sum P(5) = 2.4e-81
Identities = 63/164 (38%), Positives = 87/164 (53%)
Query: 975 VLKTIMLRRTK-GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 1033
VLK I+LRRTK G D + LPP++I L++ +E D+Y L NS+ +F Y
Sbjct: 474 VLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIE 529
Query: 1034 AGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLE 1093
AGT+ NY +I +L RLRQA DHP LV + ++S +++ K QE
Sbjct: 530 AGTLMNNYAHIFDLLTRLRQAVDHPYLVV-YSNSSGANANLVDENKSEQE---------- 578
Query: 1094 ASLAICGICNDPPEDAVVSICGHVFCNQCICE-RLTADDNQCPT 1136
CG+C+DP ED VV+ C HVFC C+ + CPT
Sbjct: 579 -----CGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPT 617
Score = 179 (68.1 bits), Expect = 2.4e-81, Sum P(5) = 2.4e-81
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L V W R++LDEA IK R+ ARA + L A RW LSGTP+QN + +LYS RFL+
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 945 DPFAVYKSFC 954
P++ Y FC
Sbjct: 409 RPYSYY--FC 416
Score = 153 (58.9 bits), Expect = 2.4e-81, Sum P(5) = 2.4e-81
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 752 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 810
V++A+ AAG TLV+CP + QW E+ + TS GS VLVYHG+ R K+ E +D
Sbjct: 184 VDRAQFGEAAGCTLVLCPLVAVSQWLNEIA-RFTSPGSTKVLVYHGAKRAKNIKEFMNYD 242
Query: 811 VVITTYSIVSME 822
V+TTYS V E
Sbjct: 243 FVLTTYSTVESE 254
Score = 134 (52.2 bits), Expect = 2.4e-81, Sum P(5) = 2.4e-81
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 620 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 679
DE + V + + AE + P L +PLLR+Q+ L+W ++E S +GGILAD+
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS---VAGGILADE 165
Query: 680 QGLGKTISTIALILKER 696
G+GKTI I+L+L R
Sbjct: 166 MGMGKTIQAISLVLARR 182
Score = 50 (22.7 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 328 DYLDAKRQCEDSKNGLPIYGNSL-SNITLGDGKRSAQPCTYSH 369
D L RQ D L +Y NS +N L D +S Q C H
Sbjct: 542 DLLTRLRQAVDHPY-LVVYSNSSGANANLVDENKSEQECGLCH 583
Score = 42 (19.8 bits), Expect = 1.9e-46, Sum P(4) = 1.9e-46
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 1053
I+L + + E R ++ ++ +A +GT QN V L L+R Q
Sbjct: 357 IILDEAHYIKERRSNTARAVFALEATYR-WALSGTPLQNRVGELYSLIRFLQ 407
Score = 38 (18.4 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
Identities = 24/118 (20%), Positives = 45/118 (38%)
Query: 197 YGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHG-SE--IISDDD 253
Y H + RL +V L Y + +A + N + + +CH +E +++
Sbjct: 537 YAHI-FDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSEQECGLCHDPAEDYVVTSCA 595
Query: 254 YYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLN 311
+ C I ++ G + LL+ + T TK E T + + +LN
Sbjct: 596 HVFCKACLIGFSASL-GKVTCPTCSKLLTVDWT-TKADTEHKASKTTLKGFRASSILN 651
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 388 (141.6 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 78/191 (40%), Positives = 117/191 (61%)
Query: 879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 938
+I + + V WFRVVLDEA +IK T+ ++A + L + RWC++GTPIQN +DDL+S
Sbjct: 1111 NITSSGIHSVKWFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSL 1170
Query: 939 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
FLR +PF Y + I P G+ +L+ +L I+LRR K ++ PI+ LP
Sbjct: 1171 LHFLRVEPFHNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPILKLP 1230
Query: 999 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
+ IM+K+ F++EE Y L ++ +F +G++ +NY ++L MLLRLRQ CDHP
Sbjct: 1231 DRTIMIKRDIFSEEEEQIYQDLWKTAKTKFNNLFQSGSLLKNYAHVLEMLLRLRQVCDHP 1290
Query: 1059 LLV-KGFDSNS 1068
LV K D+N+
Sbjct: 1291 YLVQKKQDNNN 1301
Score = 376 (137.4 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 81/187 (43%), Positives = 119/187 (63%)
Query: 1228 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ 1287
+SN+ +D++ DE K+ K DS K ++FSQWT MLDLLE L + Q
Sbjct: 1662 NSNNWKSSTKIDSLLDELNKVF-KNEPDS------KCLIFSQWTSMLDLLEYPLNLNQFQ 1714
Query: 1288 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTE 1347
+ RLDG + R+ A+K F P V + ++S+KA LGLN+VAA HV L+D WWNP+TE
Sbjct: 1715 FVRLDGKIPQKQREVAIKRFKEEPNVKIFLISIKAGGLGLNLVAASHVFLMDPWWNPSTE 1774
Query: 1348 DQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTV 1407
+QAIDR +RIGQ + V+V+R +K+++E+RIL LQ+ K+++ A T +QTR +
Sbjct: 1775 EQAIDRVYRIGQNKNVNVIRFLIKDSIEERILNLQKSKKDLAKEALN---TMKKQTR--I 1829
Query: 1408 DDLNYLF 1414
++L LF
Sbjct: 1830 EELKMLF 1836
Score = 141 (54.7 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
TL+VCP SVL+QW E+ N SL+V +YHG +R +D L K D+++TTY+ + E
Sbjct: 944 TLIVCPVSVLQQWHSEIINNTNP--SLNVYIYHGPNRNRDRSFLMKHDIILTTYTTLVAE 1001
Score = 92 (37.4 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1099 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRN 1138
C IC + E+ ++ CGH FC CI + L AD PT N
Sbjct: 1369 CTICMETLENPSITTCGHFFCTLCIQKNLIADTKLVPTIN 1408
Score = 84 (34.6 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 40/133 (30%), Positives = 54/133 (40%)
Query: 619 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETS------SL--- 669
S + L Q I++ E P + L +QR AL WM +E S SL
Sbjct: 815 STDNLFKQQIESIITETKLEMDEPKQ-FKLTLRTYQRQALYWMHHRELSEPEEIISLVDL 873
Query: 670 -------HCSGGILADDQGLGKTISTIALIL--KERPP---SFRTEDDNKRQLETLNLDE 717
GG+L DD G+GKTI IA IL K P S E++N N +
Sbjct: 874 DGSKDLSFVKGGLLCDDMGMGKTIEIIATILANKSNYPINSSSDIENNNNNNNNYNNNNN 933
Query: 718 EDNGIQVNGLDLV 730
N +Q + L+
Sbjct: 934 NTNQVQQSNCTLI 946
Score = 41 (19.5 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 558 PARSNQSLVLGKTLSMNRSACSNHS 582
PA SNQS+ L + N S +N++
Sbjct: 727 PATSNQSIPLFHNNNNNNSNSNNNN 751
Score = 38 (18.4 bits), Expect = 1.5e-80, Sum P(7) = 1.5e-80
Identities = 21/76 (27%), Positives = 30/76 (39%)
Query: 356 GDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHD 415
G S P TY H SS T V+ N +S+ S S N++ ++
Sbjct: 437 GSNLVSPSPTTYPHYISSST---VW-----NQQYISFFSSSSASSSASVNIKSTNNNNNN 488
Query: 416 GCNSFPFKDSGQSFIG 431
N+ S +SFIG
Sbjct: 489 NNNNMNNTISKESFIG 504
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 328 (120.5 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
K+IVFSQ+T MLDL+E LK + Q +L G+MS RD+ +K F + V ++SLKA
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+ LN+ A V +LD WWNP+ E Q+ DR HRIGQ RPV + R +++++E RI+ LQ
Sbjct: 699 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQ 758
Query: 1383 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+KK M+ + +DE +RLT DL +LF
Sbjct: 759 EKKANMIHATINQDEAA--ISRLTPADLQFLF 788
Score = 187 (70.9 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 311 LHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNI 370
Query: 945 DPFAVYKSFCS 955
+PF Y FC+
Sbjct: 371 NPFTKY--FCT 379
Score = 182 (69.1 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 966 VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 1025
++ + +Q +LK IMLRRTK D + LPP+++ +++ F +EE+D Y L +S+
Sbjct: 428 LESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLYTDSK 484
Query: 1026 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
++ + G V NY NI ++ R+RQ DHP LV
Sbjct: 485 RKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV 520
Score = 143 (55.4 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 823 VPKQPLG 829
KQ G
Sbjct: 291 FRKQNYG 297
Score = 122 (48.0 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 41/129 (31%), Positives = 61/129 (47%)
Query: 1093 EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA---DDNQ--CPTRNCKIRLSLSS 1147
+ + IC +CND E+ + S C H FC CI E + + ++N+ CP C I LS+
Sbjct: 531 DIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPV--CHIGLSID- 587
Query: 1148 VFSKATLNNSLSQRQPGQEIPTD-YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 1206
LSQ P E+ D + +V + G W +S+KI+A +E L L R
Sbjct: 588 ----------LSQ--PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKL---R 632
Query: 1207 GNTVTNHSL 1215
N T S+
Sbjct: 633 SNKRTIKSI 641
Score = 118 (46.6 bits), Expect = 4.9e-80, Sum P(6) = 4.9e-80
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE--RPPS 699
PDG + + LL Q L W++ +E S++ +GG+LAD+ G+GKTI TIAL++ + + PS
Sbjct: 177 PDG-MTIKLLPFQLEGLHWLISQE-ESIY-AGGVLADEMGMGKTIQTIALLMNDLTKSPS 233
Score = 41 (19.5 bits), Expect = 4.6e-42, Sum P(4) = 4.6e-42
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 915 LRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 957
L +W S T I+ +++LY R V+ F SM+
Sbjct: 609 LNMSGKW-QSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSML 650
Score = 41 (19.5 bits), Expect = 6.8e-40, Sum P(4) = 6.8e-40
Identities = 17/84 (20%), Positives = 35/84 (41%)
Query: 969 YKKLQAVLK--TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRD 1026
Y L++V + RR G + N+ ++L + ++R + +N+
Sbjct: 284 YAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAH-NIKDRQSNTARAVNNLK 342
Query: 1027 QFKEYAAAGTVKQNYVNILLMLLR 1050
K + +GT QN + + L+R
Sbjct: 343 TQKRWCLSGTPLQNRIGEMYSLIR 366
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 383 (139.9 bits), Expect = 6.0e-80, Sum P(5) = 6.0e-80
Identities = 90/246 (36%), Positives = 128/246 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 945 DPFAVYKSFCSMIKVPISK---NPVKG-YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
P+ V+ F I P+ + V+ K+L+ +L + + RRTK T ++ PI+NLPPK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPK 505
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
I V+ EER Y++ +++ Y Y +L+ LLRLRQ C HP L
Sbjct: 506 TIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWL 565
Query: 1061 VKG--FDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CGHV 1117
VK D++ +R S + + + C +C DP V I CGH
Sbjct: 566 VKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHF 625
Query: 1118 FCNQCI 1123
C +C+
Sbjct: 626 TCQECM 631
Score = 341 (125.1 bits), Expect = 6.0e-80, Sum P(5) = 6.0e-80
Identities = 70/153 (45%), Positives = 107/153 (69%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
EK +V+SQ+++ L L+ LK +I++ R DGTMS R K++ FN +V VM++SLK
Sbjct: 742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLK 801
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A S+GLN+ A HV+L + ++NP+ EDQAIDR HR+GQ +PV+V R K+T+E+RI+++
Sbjct: 802 AGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSV 861
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
Q+KKR++V A +E +RL ++L YLF
Sbjct: 862 QRKKRQLVKEALDSNENN-PLSRLDKEELLYLF 893
Score = 142 (55.0 bits), Expect = 6.0e-80, Sum P(5) = 6.0e-80
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSME 822
L+V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E
Sbjct: 304 LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 823 VPKQ 826
+ KQ
Sbjct: 364 M-KQ 366
Score = 121 (47.7 bits), Expect = 6.0e-80, Sum P(5) = 6.0e-80
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
L V LL HQ +WM E SS C GG++ADD GLGKTI TIAL+L ++
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKTIQTIALLLTQK 294
Score = 51 (23.0 bits), Expect = 6.0e-80, Sum P(5) = 6.0e-80
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 266 DTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSS 306
D++ P FQ L + EE A + +DE + A SSS
Sbjct: 2 DSLSAYPPQSTFQQLQNDEELARRLQDEWNSSSPSSAPSSS 42
Score = 42 (19.8 bits), Expect = 6.7e-61, Sum P(3) = 6.7e-61
Identities = 31/118 (26%), Positives = 47/118 (39%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQ--DELVQDVGSHSNLQLQSE 77
ADD GL + T+ +L ++ Q K++ +S+ L Q +EL V H + +L
Sbjct: 275 ADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELSTKV--HPSKKLSVY 332
Query: 78 IS-GAESGGLGDSS-SQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFET 133
I G+ L SQ + S L +D FN N+ S ET
Sbjct: 333 IHHGSTKKNLDSYELSQYDVVLTTYSML-AYEMKQNDAFNNNNPATATPPPACSLLET 389
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 427 (155.4 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 117/323 (36%), Positives = 166/323 (51%)
Query: 888 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947
V WFR+VLDEA +IKN ++Q++ A L A RRWCL+GTPIQN ++DLYS RFLR +P+
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPW 624
Query: 948 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQ 1006
+ + +++ P + +G K +Q++LK IMLRRTK T +G PI+ LPP +
Sbjct: 625 GTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
+ ++ ERDFY L S+ +F ++ G V NY +IL +LLRLRQ CDHP LV
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGD 744
Query: 1067 NSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDA----VVSICGHVFCNQC 1122
+ +++K+ L+ + L G D P +A VV +C
Sbjct: 745 TAEYSDLNKLSKRF--------LSGKSSGLEREG--KDVPSEAFVQEVVEELRKGEQGEC 794
Query: 1123 -ICERLTADD--NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA 1179
IC D C R C+ L S S + L QE+ T ++S+
Sbjct: 795 PICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRF--Q 852
Query: 1180 PSCEGVWYNSSKIKAALEVLQSL 1202
E W SSKI A LE L+ L
Sbjct: 853 VDVEKNWVESSKITALLEELEGL 875
Score = 355 (130.0 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 70/172 (40%), Positives = 111/172 (64%)
Query: 1244 ENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDK 1302
E+ KI A ++ ++ G K+I+FSQWT LDLL+ L ++ + RLDGT+S R+K
Sbjct: 861 ESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREK 920
Query: 1303 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362
+K+F+ + V++MSLKA +G+N+ AA + ++D WWNP E+QA+ R HRIGQT+
Sbjct: 921 VLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKE 980
Query: 1363 VSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
V + R VK TVE+R+ A+Q +K+ M++ A + E + R +++L LF
Sbjct: 981 VKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEV--RSAR--IEELKMLF 1028
Score = 172 (65.6 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 54/154 (35%), Positives = 77/154 (50%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 732
GGILAD GLGKT+ TI+L+L S++ N E D I + DL
Sbjct: 414 GGILADAMGLGKTVMTISLLLAH---SWKAASTG---FLCPNY-EGDKVISSSVDDLTSP 466
Query: 733 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 792
+ + G + +EQ G L+VCP ++L QW E+ GSLSV
Sbjct: 467 PVKATKFL--GFDKR---LLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGSLSVY 520
Query: 793 VYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ 826
V++G SR KD L++ DVVITTY +++ E ++
Sbjct: 521 VHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQE 554
Score = 42 (19.8 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 678 DDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 737
D++GL S + I+ R S + D R + L L D +V +L + E D+
Sbjct: 642 DERGLKLVQSILKPIMLRRTKS--STDREGRPI--LVLPPAD--ARVIYCELSESERDFY 695
Query: 738 RVVPNGSSAKSFNFVEQAK 756
+ S K FVEQ K
Sbjct: 696 DALFKRSKVKFDQFVEQGK 714
Score = 41 (19.5 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 631 GISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 665
G S E P +L L +Q+ AL WM Q E
Sbjct: 330 GDSSGLKEMETPHTLLC-ELRPYQKQALHWMTQLE 363
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 947 FAVYKSFCSMIKVPISKN 964
F+ + +F ++++P+S+N
Sbjct: 885 FSQWTAFLDLLQIPLSRN 902
Score = 40 (19.1 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 26/104 (25%), Positives = 38/104 (36%)
Query: 43 DRVKSSPGDLSLRNLSQDELVQDVGSHSNLQ-LQSEISGAESGGLGDSSSQLEPTEQKCS 101
D K S LS ++ + +DV S + +Q + E+ E G LE
Sbjct: 750 DLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPC 809
Query: 102 PLQTC-SASFSDWFNQNSGTC--CPESVGISQFETPGCSTASSF 142
+ C + W N SG C C +V + T T S F
Sbjct: 810 AHRLCRECLLASWRNSTSGLCPVCRNTVSKQELIT--APTESRF 851
Score = 39 (18.8 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 269 FGDPSSFNFQHLLSSEETATKPKDEEGEFTTE---IACSS-SGL 308
FGD S H + E + EE E + CS +GL
Sbjct: 78 FGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAGL 121
Score = 39 (18.8 bits), Expect = 5.1e-25, Sum P(4) = 5.1e-25
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 522 SHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQ 563
S L KLS + SS + D P ++++ + R +
Sbjct: 749 SDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGE 790
Score = 38 (18.4 bits), Expect = 5.4e-79, Sum P(5) = 5.4e-79
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 383 DEGNDDLFPCWST--VSDSVEPIDEAVGRNSSYHDGCNSFP 421
DE L PCW ++D E + V NS D FP
Sbjct: 369 DEAATMLHPCWEAYCLADKRELV---VYLNSFTGDATIHFP 406
Score = 37 (18.1 bits), Expect = 6.3e-65, Sum P(5) = 6.3e-65
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 570 TLSMNRSACSNHSVALGKPVVT 591
TL M R ++ LGK V+T
Sbjct: 408 TLQMARGGILADAMGLGKTVMT 429
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 424 (154.3 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 90/261 (34%), Positives = 144/261 (55%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 605 LKPFVDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 664
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 1062
++ + +DEER Y ++ + Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 665 IQHITLSDEERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLAN 724
Query: 1063 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1120
S+ + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 725 AVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEE---CAICLDSLMAPVITHCAHVFCK 781
Query: 1121 QCICERLTADDNQCPTRNCKI 1141
CIC+ + N+ P C +
Sbjct: 782 PCICQVI---QNEQPHAKCPL 799
Score = 289 (106.8 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 853 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 912
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 913 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
Query: 1381 LQQKKREMVASAFGEDETGGQQTR 1404
+Q KRE+ A AFG +T + +
Sbjct: 973 IQNTKRELAAGAFGTKKTNASEMK 996
Score = 144 (55.7 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 738 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
+++ G+SA + + +P TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKRGASAVESSKKTDVEDKPRT-TLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGP 512
Query: 798 SRTKDPCELAKFDVVITTYSIVS 820
R +DP L+K D+V+TTY+I++
Sbjct: 513 DRVRDPTLLSKQDIVLTTYNILT 535
Score = 92 (37.4 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 32/86 (37%), Positives = 41/86 (47%)
Query: 673 GGILADDQGLGKTISTIALILKE--RPPSFRTEDDNKRQLET-LNLDEED-----NGIQV 724
GGILADD GLGKT++ IA+IL S E K QL+ N+ +E N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKSLPVERIKKNQLKKECNVYDESMELGGNNTSE 348
Query: 725 NGLDLVKQESDYCRVVPNGSSAKSFN 750
L+K E C P+ S K+ N
Sbjct: 349 KAAGLIK-EGSRCSGEPSISDVKTQN 373
Score = 69 (29.3 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 21/74 (28%), Positives = 28/74 (37%)
Query: 1148 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 1194
VF K + + QP + P D L+E P +C W +SSKI A
Sbjct: 778 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDSLIECPPEELACNTEKKSNMEWTSSSKINA 837
Query: 1195 ALEVLQSLAKPRGN 1208
+ L L K N
Sbjct: 838 LMHALIDLRKKNPN 851
Score = 49 (22.3 bits), Expect = 6.8e-27, Sum P(6) = 6.8e-27
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1149 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 1206
+ K+ ++S S+R+P T+ SDS+ VE PS E K+K L+ QS K R
Sbjct: 375 YPKSEFSSSRSKRKPAAVQYTESSDSEEVE-PS-E----LPQKMKGKLKRTQSETKIR 426
Score = 45 (20.9 bits), Expect = 4.5e-71, Sum P(5) = 4.5e-71
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 319 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 378
G L V I K++C + + GN+ S G K ++ C+ S S Q
Sbjct: 315 GKSLPVERIKKNQLKKECNVYDESMELGGNNTSEKAAGLIKEGSR-CSGEPSISDVKTQN 373
Query: 379 VFAKDE 384
+ K E
Sbjct: 374 KYPKSE 379
Score = 39 (18.8 bits), Expect = 9.8e-79, Sum P(7) = 9.8e-79
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 501 KKELDGVKEDMEAEIKTRSM 520
K E D + ED++ + KT+ M
Sbjct: 211 KTEFDKLFEDLKEDDKTQEM 230
Score = 38 (18.4 bits), Expect = 2.7e-77, Sum P(7) = 2.7e-77
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1225 CPGDSNDLHGGDTL 1238
CP ND+HG D+L
Sbjct: 797 CPLCRNDIHG-DSL 809
Score = 38 (18.4 bits), Expect = 7.0e-20, Sum P(4) = 7.0e-20
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 566 VLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYP 601
VLG L + + C H +A V+S S +D P
Sbjct: 705 VLGLLLRLRQICCHTHLLA---NAVSSSGPSGNDTP 737
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 424 (154.3 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 91/261 (34%), Positives = 145/261 (55%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 543 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 602
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 603 LKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 662
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H L+
Sbjct: 663 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN 722
Query: 1064 FDSNSLLRSS---VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1120
S+S + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 723 AGSSSGPSGNDTPEELRKKLIRKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 779
Query: 1121 QCICERLTADDNQCPTRNCKI 1141
CIC+ + N+ P C +
Sbjct: 780 PCICQVI---QNEQPHAKCPL 797
Score = 289 (106.8 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 851 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 910
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 911 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 970
Query: 1381 LQQKKREMVASAFGEDETGGQQTR 1404
+Q KRE+ A AFG +T + +
Sbjct: 971 IQNTKRELAAGAFGTKKTNANEMK 994
Score = 148 (57.2 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 738 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
R++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 452 RMLKKGASAVEGSKKTDIEDRPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 510
Query: 798 SRTKDPCELAKFDVVITTYSIVS 820
R +DP L+K D+V+TTY+I++
Sbjct: 511 DRIRDPALLSKQDIVLTTYNILT 533
Score = 82 (33.9 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILADD GLGKT++ IA+IL
Sbjct: 289 GGILADDMGLGKTLTAIAVIL 309
Score = 69 (29.3 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 1148 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 1194
VF K + + QP + P D L+E P +C+ W +SSKI A
Sbjct: 776 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNTEWTSSSKINA 835
Query: 1195 ALEVLQSLAKPRGN 1208
+ L L K N
Sbjct: 836 LMHALIDLRKKNPN 849
Score = 44 (20.5 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 319 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 378
G L V I K++C + + + GN+ S DG C+ S S +
Sbjct: 315 GKPLPVERIKKNQMKKECNVNDQSMKLGGNNASE--KADGLIKGSRCSGEPSISDVKGKK 372
Query: 379 VFAKDE 384
+ K E
Sbjct: 373 KYTKSE 378
Score = 41 (19.5 bits), Expect = 6.8e-77, Sum P(7) = 6.8e-77
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1225 CPGDSNDLHGGDTLD 1239
CP ND+HG + L+
Sbjct: 795 CPLCRNDIHGDNLLE 809
Score = 38 (18.4 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 501 KKELDGVKEDMEAEIKTRSM 520
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 437 (158.9 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 93/260 (35%), Positives = 147/260 (56%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 539 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 598
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + +I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 599 LKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 658
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 1062
++ + ++EER Y ++ + Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 659 IQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTN 718
Query: 1063 GFDSNSLLRSSV-EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1121
G S+ RS E +K+ E+ +L+ S C IC D V++ C HVFC
Sbjct: 719 GMSSSGPSRSDTPEELRKMLIEKMKIILS--SGSDEECAICLDSLTFPVITHCAHVFCKP 776
Query: 1122 CICERLTADDN--QCPT-RN 1138
CIC+ + ++ +CP RN
Sbjct: 777 CICQVIHSEQPHAKCPLCRN 796
Score = 288 (106.4 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 59/138 (42%), Positives = 89/138 (64%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSL 906
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 907 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 966
Query: 1381 LQQKKREMVASAFGEDET 1398
+Q KR++ A AFG +T
Sbjct: 967 IQNTKRDLAAGAFGTKKT 984
Score = 133 (51.9 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 757 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTY 816
G TL++CP SVL W ++ V S+ L+ VY+G R +D L+K D+++TTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 817 SIVS 820
+I++
Sbjct: 526 NILT 529
Score = 87 (35.7 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 659 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 277 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 309
Score = 67 (28.6 bits), Expect = 1.4e-72, Sum P(5) = 1.4e-72
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WM+ +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMIARENS 257
Score = 42 (19.8 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 1148 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEG------VWYNSSKIKA 1194
VF K + + QP + P + L+E P +C+ W +SSKI A
Sbjct: 772 VFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPPEELACDSDKESSMEWKSSSKINA 831
Query: 1195 ALEVLQSL 1202
+ L L
Sbjct: 832 LMHALIEL 839
Score = 39 (18.8 bits), Expect = 2.4e-74, Sum P(5) = 2.4e-74
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1217 HSFNGSICCPGDSNDLHGGDTLD 1239
HS CP N++HG + L+
Sbjct: 783 HSEQPHAKCPLCRNEIHGDNLLE 805
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 313 (115.2 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 60/152 (39%), Positives = 98/152 (64%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
K+IVFSQ+T MLDL+ L+ + +LDG M+ AR ++ F+ +++ ++SLKA
Sbjct: 710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 769
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+ LN+ A V ++D WWN + QA+DR HRIGQ RP+ V+ L ++N++E +I+ LQ
Sbjct: 770 GGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQ 829
Query: 1383 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+KK +M+ + +DE Q L+V+D+ +LF
Sbjct: 830 EKKAQMIHATIDQDEKALNQ--LSVEDMQFLF 859
Score = 196 (74.1 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 956 MIKVPISK----NPVK-GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFT 1010
M+K PI K P K +KK+ ++LK IMLRRTK L+ + LPP+V+ +++ F
Sbjct: 485 MLK-PIQKFGYEGPGKLAFKKVHSLLKHIMLRRTK---LERADDLGLPPRVVEVRKDLFN 540
Query: 1011 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+EE D Y L ++S+ +F Y A G V NY NI ++ R+RQ DHP LV
Sbjct: 541 EEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLV 591
Score = 182 (69.1 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ ++R++LDEA IK+ ARA GLR R+ CLSGTP+QN I +L+S RFLR
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRA 441
Query: 945 DPFAVYKSFC 954
DPFA Y +C
Sbjct: 442 DPFAYY--YC 449
Score = 118 (46.6 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 752 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDV 811
+ + +G+P TLVV P + QW EE+ T+K +LS +Y+G +R EL+ +DV
Sbjct: 296 LSEPRGKP---TLVVAPVVAIMQWKEEIDTH-TNK-ALSTYLYYGQARDISGEELSSYDV 350
Query: 812 VITTYSIVSMEVPKQPLG 829
V+T+Y+++ K+ G
Sbjct: 351 VLTSYNVIESVYRKERSG 368
Score = 116 (45.9 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 695
L + LL QR + W+ ++E SS GGILAD+ G+GKTI TIAL+L E
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSF--GGGILADEMGMGKTIQTIALLLSE 298
Score = 103 (41.3 bits), Expect = 5.1e-74, Sum P(6) = 5.1e-74
Identities = 37/115 (32%), Positives = 54/115 (46%)
Query: 1098 ICGICNDPPEDAVVSICGHVFCNQCICERLTA-DDNQ---CPTRNCKIRLSLSSVFSKAT 1153
+C IC++ +DA+ S C H FC C+ E + A D + CP+ C I LS+
Sbjct: 608 VCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPS--CFIPLSID------- 658
Query: 1154 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGV----WYNSSKIKAALEVLQSLAK 1204
LS P E D+S+ K A + W +S+KI+A +E L L K
Sbjct: 659 ----LSA--PALE---DFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRK 704
Score = 39 (18.8 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 448 EHEDLILESKR 458
+H DL+L SKR
Sbjct: 586 DHPDLVLASKR 596
Score = 37 (18.1 bits), Expect = 4.2e-43, Sum P(5) = 4.2e-43
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1029 KEYAAAGTVKQNYVNILLMLLRLRQA 1054
++ +GT QN + L LLR +A
Sbjct: 416 RKICLSGTPLQNRIGELFSLLRFLRA 441
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 426 (155.0 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 91/261 (34%), Positives = 145/261 (55%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 547 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 606
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 607 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 666
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 1062
++ + +DEER Y ++ + R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 667 IQHITLSDEERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN 726
Query: 1063 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1120
S+ + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 727 AVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 783
Query: 1121 QCICERLTADDNQCPTRNCKI 1141
CIC+ + N+ P C +
Sbjct: 784 PCICQVI---QNEQPHAKCPL 801
Score = 289 (106.8 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 855 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 914
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 915 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 974
Query: 1381 LQQKKREMVASAFGEDETGGQQTR 1404
+Q KRE+ A AFG +T + +
Sbjct: 975 IQNTKRELAAGAFGTKKTNASEMK 998
Score = 146 (56.5 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 738 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
+++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 456 KMLKKGASAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 514
Query: 798 SRTKDPCELAKFDVVITTYSIVS 820
R +DP L+K D+V+TTY+I++
Sbjct: 515 DRVRDPALLSKQDIVLTTYNILT 537
Score = 94 (38.1 bits), Expect = 4.3e-68, Sum P(6) = 4.3e-68
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 673 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 728
GGILADD GLGKT++ IA+IL +P F E K QL+ + D +Q+ G +
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKPLPF--ERIKKNQLKK-ECNVYDESVQLGGNN 345
Query: 729 LVKQESDYCRVVPNGSSAKSFNFVEQAKGR 758
+++D GS + KG+
Sbjct: 346 -TSEKADGLTKEMEGSRCSGEPSISDVKGK 374
Score = 68 (29.0 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAVETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 1148 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 1194
VF K + + QP + P D L+E P +C+ W +SSKI A
Sbjct: 780 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTSSSKINA 839
Query: 1195 ALEVLQSLAKPRGN 1208
+ L L K N
Sbjct: 840 LMHALIDLRKKNPN 853
Score = 41 (19.5 bits), Expect = 2.1e-72, Sum P(6) = 2.1e-72
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1225 CPGDSNDLHGGDTLD 1239
CP ND+HG + L+
Sbjct: 799 CPLCRNDIHGDNLLE 813
Score = 38 (18.4 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 501 KKELDGVKEDMEAEIKTRSM 520
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 417 (151.9 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 89/256 (34%), Positives = 142/256 (55%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 540 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 599
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + +I+ P++ G ++LQ+++K+I LRRTK + + G+P++ LP + +
Sbjct: 600 LKPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIKGKPVLELPERKVF 659
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL-VK 1062
++ + + EER Y ++ + Y GTV +Y ++L +LLRLRQ C H L
Sbjct: 660 IQHITLSVEERKIYQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQICCHVHLPTN 719
Query: 1063 GFDSNSLLRSSV-EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1121
G S+ RS E +K+ + +L+ S C IC D V++ C HVFC
Sbjct: 720 GTSSSDPSRSDTPEELRKMLVTKMKLILS--SGSDEECSICLDSLTFPVITHCAHVFCKP 777
Query: 1122 CICERLTADDN--QCP 1135
CIC+ + + +CP
Sbjct: 778 CICQVIQREQPHAKCP 793
Score = 292 (107.8 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 848 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSL 907
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 908 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 967
Query: 1381 LQQKKREMVASAFGEDETGGQQTR 1404
+Q KRE+ A AFG +T + +
Sbjct: 968 IQNMKRELAAGAFGTKKTDADEMK 991
Score = 137 (53.3 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 34/125 (27%), Positives = 65/125 (52%)
Query: 707 KRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSA-------KSFNFVEQAK--- 756
K +L+ LD + +V G +K+++ + + A K + +E +K
Sbjct: 409 KGKLKNTQLDTKS---KVKGSSKIKEDTQFALALTYFGPATKKKMLKKGTSVMESSKKCD 465
Query: 757 -GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITT 815
G TL++CP SVL W +++ + S+ L++ VY+G R +D L+K D+++TT
Sbjct: 466 TGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTT 525
Query: 816 YSIVS 820
Y+I++
Sbjct: 526 YNILT 530
Score = 87 (35.7 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 659 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 276 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 308
Score = 66 (28.3 bits), Expect = 3.9e-71, Sum P(5) = 3.9e-71
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WM+ +E S
Sbjct: 231 PAEAVETPLLPHQKQALAWMIARENS 256
Score = 43 (20.2 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 1148 VFSKATLNNSLSQRQPGQEIPTDYSD---SKLVEAP----SCEG------VWYNSSKIKA 1194
VF K + + + QP + P S+ L+E P +C+ W +SSKI A
Sbjct: 773 VFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEELACDSDNKSDMEWTSSSKINA 832
Query: 1195 ALEVLQSL 1202
+ L L
Sbjct: 833 LMNALIEL 840
Score = 41 (19.5 bits), Expect = 1.8e-68, Sum P(5) = 1.8e-68
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEIS 79
K++ G S++ + DV SN+Q+ +EIS
Sbjct: 345 KTTDGHSEPSACSEEPSISDVSEKSNVQV-TEIS 377
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 427 (155.4 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 91/261 (34%), Positives = 144/261 (55%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 605 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 664
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 1062
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 665 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN 724
Query: 1063 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1120
SN + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 725 AVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 781
Query: 1121 QCICERLTADDNQCPTRNCKI 1141
CIC+ + N+ P C +
Sbjct: 782 PCICQVI---QNEQPHAKCPL 799
Score = 291 (107.5 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 853 KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 912
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 913 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
Query: 1381 LQQKKREMVASAFGEDETGGQQTR 1404
+Q KKRE+ A AFG + + +
Sbjct: 973 IQNKKRELAAGAFGTKKPNADEMK 996
Score = 136 (52.9 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 738 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
+++ G+ A + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKKGACAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 512
Query: 798 SRTKDPCELAKFDVVITTYSIVS 820
R ++P L+K D+V+TTY+I++
Sbjct: 513 DRIREPALLSKQDIVLTTYNILT 535
Score = 88 (36.0 bits), Expect = 6.6e-68, Sum P(6) = 6.6e-68
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 673 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL- 727
GGILADD GLGKT++ IA+IL RP N + E N++++ + N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKE-YNVNDDSMKLGGNNTS 347
Query: 728 ---DLVKQESDYCRVVPNGSSAKS---FNFVEQAKGRP 759
D + +++ C P+ S K F E + RP
Sbjct: 348 EKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRP 385
Score = 69 (29.3 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETS 667
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 21/74 (28%), Positives = 28/74 (37%)
Query: 1148 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAPSCEGV----------WYNSSKIKA 1194
VF K + + QP + P D + L+E P E W +SSKI A
Sbjct: 778 VFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINA 837
Query: 1195 ALEVLQSLAKPRGN 1208
+ L L K N
Sbjct: 838 LMHALTDLRKKNPN 851
Score = 50 (22.7 bits), Expect = 5.4e-64, Sum P(6) = 5.4e-64
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 740 VPNGSSAKSFNFVEQAKGRPAAGTLVVCP----TSVLRQWAEELRNKVTSKGSLSVLVYH 795
+P K N + KGR AG+ V L + K+ KG+ +V
Sbjct: 408 LPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAV---E 464
Query: 796 GSSRTKDPCELAKFDVVITTYSIVS 820
GS +T D E + ++I S++S
Sbjct: 465 GSKKT-DVEERPRTTLIICPLSVLS 488
Score = 39 (18.8 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 1127 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVW 1186
L+ D ++C + + S F + L++S +R+ + SDS+ +E
Sbjct: 353 LSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELP--- 409
Query: 1187 YNSSKIKAALEVLQSLAKPR 1206
K+K L+ +QS K R
Sbjct: 410 ---QKMKGKLKNVQSETKGR 426
Score = 38 (18.4 bits), Expect = 6.0e-73, Sum P(6) = 6.0e-73
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 501 KKELDGVKEDMEAEIKTRSM 520
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 392 (143.0 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 76/186 (40%), Positives = 117/186 (62%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L V WFRVVLDE +I+N ++ A+AC + ++ RW ++GTPI N +DDLYS +F+RY
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 945 DPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 1002
+P+ Y + + + +P SK+ +K +Q++L+ ++LRRTK T +G I+ LPPK +
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTV 764
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++ +DF+D ER Y L ++ AGT+ +NY IL +LLRLRQAC P+L+
Sbjct: 765 KIEYLDFSDSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLS 824
Query: 1063 GFDSNS 1068
NS
Sbjct: 825 NMTINS 830
Score = 331 (121.6 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 66/153 (43%), Positives = 100/153 (65%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
EK ++FSQ+T LD++ L+ + Y R DGTMS R A++ F P+V+V+I+SLK
Sbjct: 982 EKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLK 1041
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A +GLN+ A HV ++D WW+ + E QAIDR HR+GQ +PV V R V++TVE+R+L +
Sbjct: 1042 AGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKI 1101
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
Q++K + G E G QQ + +++D+ LF
Sbjct: 1102 QERKN-FITGTLGMSE-GKQQVQ-SIEDIKMLF 1131
Score = 89 (36.4 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 1067 NSLLRSSVEMAKKLPQE-RQMYLLNCLEASLAICGIC-NDPPEDAVVSICGHVFCNQCIC 1124
NSL+ V K +P + ++ L EA + C IC N+P ++ ++ C H C C+
Sbjct: 844 NSLINQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLS 903
Query: 1125 ERLTADD--NQCPT--RNCKIRLSLSSVFSKATLNNSLSQRQ--PGQEIPTDY 1171
E + N P C+ + V+ + N+ +Q G+E+ Y
Sbjct: 904 EHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVKWKY 956
Score = 79 (32.9 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTED 704
GGILAD+ GLGKTI ++LI P F T++
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSR--PCFSTDE 553
Score = 79 (32.9 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFD---VVITTYS 817
TLVV P S+L QW E KV+ ++Y+GS + D C + ++IT+Y
Sbjct: 572 TLVVAPMSLLDQWHSEAC-KVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYG 630
Query: 818 IVSMEVPKQ 826
++ E +Q
Sbjct: 631 VLLSEFSQQ 639
Score = 49 (22.3 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 619 SDERLIL--QVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 665
SD+ IL +V G P+A + A+ L +Q+ AL WM KE
Sbjct: 415 SDQLAILYDKVKTSGAELPSAPKPS---TFALDLREYQKQALYWMCCKE 460
Score = 45 (20.9 bits), Expect = 6.8e-73, Sum P(7) = 6.8e-73
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 374 RTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDE 405
+T + A+DE N DL P S+ D + + +
Sbjct: 387 KTSSLPEARDESNSDLTP--SSTEDEEDVVSD 416
Score = 39 (18.8 bits), Expect = 2.8e-72, Sum P(7) = 2.8e-72
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 507 VKEDME-AEIKTRSMASHLLKLS--PESIQSNSSDCK-SHVDDEPDI 549
++ D+E K +LK S PE+ ++SD S +DE D+
Sbjct: 367 LEPDLEDCNTKESIHIDDILKTSSLPEARDESNSDLTPSSTEDEEDV 413
Score = 38 (18.4 bits), Expect = 2.7e-31, Sum P(6) = 2.7e-31
Identities = 24/97 (24%), Positives = 42/97 (43%)
Query: 1187 YNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 1246
Y S + AL V+QS+ + T + + N + P + + + LD SD
Sbjct: 721 YQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKI---EYLD-FSDSER 776
Query: 1247 KI------AAKCSIDSIKLGGEKAIVFSQWTKMLDLL 1277
KI AK ++++ + G +F +T +L LL
Sbjct: 777 KIYDSLYTKAKSTVNANIVAGT---LFRNYTTILGLL 810
Score = 37 (18.1 bits), Expect = 4.5e-72, Sum P(7) = 4.5e-72
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 553 EDISQPARSNQSLVLGKTLSMNRSACSN 580
+ +S ++S S K LS+N S SN
Sbjct: 234 QKLSIKSQSRNSRKKSKLLSINSSCYSN 261
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 297 (109.6 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 58/153 (37%), Positives = 96/153 (62%)
Query: 1265 IVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAA 1323
++ SQWT ML ++ L+ +++ +DGT++ R V++FNT P+ VM++SL A
Sbjct: 999 VIVSQWTSMLKIVAVHLEKMGLKFAVIDGTVNPKRRMDLVEEFNTNPKGPQVMLVSLCAG 1058
Query: 1324 SLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1383
+G+N++ H+ L+D+ WNP EDQA DR +R+GQ++ V++ R TVED+I +LQ+
Sbjct: 1059 GVGINLIGGNHLFLIDMHWNPALEDQACDRIYRVGQSKDVTIHRFVCDGTVEDKISSLQE 1118
Query: 1384 KKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416
KK+E+ TG T+L++ DL +F V
Sbjct: 1119 KKKELAQKVLSG--TGSSFTKLSLADLRVIFGV 1149
Score = 275 (101.9 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 59/165 (35%), Positives = 94/165 (56%)
Query: 868 KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 927
K K D + D+ PL +V W RV+LDEA SIKN + Q + A LRA+ RW ++GTP
Sbjct: 695 KPSKDSDHVASDLP--PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTP 752
Query: 928 IQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGT 987
IQN + D+YS +FLR PF YK + K + +G ++L + + ++LRRTK
Sbjct: 753 IQNNLLDMYSLLKFLRCSPFDEYKLW----KAQVDNGSKRGGERLNILTRALLLRRTKDQ 808
Query: 988 L-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
L G+P+++LP + + ++ +++E+ Y + SR + Y
Sbjct: 809 LDATGKPLVSLPDRTCEIHRLKLSEDEQAVYDVVFAQSRSTLQNY 853
Score = 164 (62.8 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 762 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 821
GTL++CP S++ W +E+ +V S L+V +YHG +R + LA+ DVVITTYS+VS
Sbjct: 626 GTLIICPASLVHHWKKEIDKRVKSS-RLTVYLYHGPNRQRSASVLAEHDVVITTYSLVSK 684
Query: 822 EVPKQ 826
E+P Q
Sbjct: 685 EIPVQ 689
Score = 162 (62.1 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 62/213 (29%), Positives = 96/213 (45%)
Query: 497 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCK---SHVDDEPDICIL 552
S +N L E ++ ++K A L L+ ES + ++ + +H P C
Sbjct: 410 SVVNVSALPDKGERLKRQVKDLEEALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG 469
Query: 553 EDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG-YPGVPLTGL 611
I P L + S+ + +S G V Q ++ Y G L +
Sbjct: 470 GTILLPTAPAAMLKESSSASLGLNLSQGYSQMFG--AVNPQSQAF--YGGRMTENRLLAV 525
Query: 612 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 671
++A D L +++ N EA P G L V LL HQ+ AL+W++ +ET C
Sbjct: 526 RNATTEAIDH---LHDSLESCPTENTEAHDPKG-LKVELLPHQKRALTWLLWRETQK-PC 580
Query: 672 SGGILADDQGLGKTISTIALILKERPPSFRTED 704
GGILADD GLGKT++ IALIL ++ + E+
Sbjct: 581 -GGILADDMGLGKTLTMIALILSQKKKDEKLEE 612
Score = 67 (28.6 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 1042 VNILLMLLRLRQACDH-PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEAS 1095
++IL +LLRLRQ C H LL K D + L V ++ E Q+ L+ E S
Sbjct: 899 IHILSLLLRLRQCCCHLSLLKKTLDQSELQGDGVALSL----EEQLCALSLSEPS 949
Score = 63 (27.2 bits), Expect = 1.4e-72, Sum P(6) = 1.4e-72
Identities = 31/112 (27%), Positives = 49/112 (43%)
Query: 29 MDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVG---SHSNLQLQSEISGAESGG 85
+ T + I + ++ KS+ D + S D G S +NL+ Q E S ++GG
Sbjct: 204 LPTGMKIKKRVSDDEKPKSAAEDETCPESSNPVKENDKGQTESENNLKDQQEQSPRKTGG 263
Query: 86 LGDSSSQLEP-TEQKCSPLQTCS--ASFSDWFNQNSGTCCPESVG-ISQFET 133
S S+ P ++K S Q+ S S SD S +C G +S+ T
Sbjct: 264 SAQSPSKSSPGLDKKTSNKQSTSNSKSGSDKTQSQSPSCSTSQNGTVSEKPT 315
Score = 49 (22.3 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1192 IKAALEVLQSLA---KPRGNTVTNHSLRHSFNGSICCPG 1227
++ ALE L A + + H HSF+ CPG
Sbjct: 431 LEEALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG 469
Score = 41 (19.5 bits), Expect = 4.6e-58, Sum P(5) = 4.6e-58
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVK 46
ADD GL + + IL ++K+ ++++
Sbjct: 585 ADDMGLGKTLTMIALILSQKKKDEKLE 611
Score = 37 (18.1 bits), Expect = 8.0e-70, Sum P(6) = 8.0e-70
Identities = 17/94 (18%), Positives = 40/94 (42%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
GEV+ ++ A+ Q D G E E + + D R+ + E ++ +
Sbjct: 147 GEVNDENKHANVQDNDKKRDERTGTTEREGNNKKGPAVHSDTERRDSADSESWRNKTLPT 206
Query: 71 NLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQ 104
++++ +S E S+++ E + +P++
Sbjct: 207 GMKIKKRVSDDEKP---KSAAEDETCPESSNPVK 237
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 337 (123.7 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 73/177 (41%), Positives = 105/177 (59%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W+R++LDEA +IKN ++ A AC L+ RWCL+GTP+QN +D+LYS +FL +PF
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFND 437
Query: 950 YKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTLL------DGEP-IINLPPKV 1001
+ I +P+ + +K+L+ +L IMLRRTK TLL DG + L ++
Sbjct: 438 QSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGALKLSKRL 496
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
+ F + ERDFYS L N + +G + +NY NIL +LLRLRQAC+HP
Sbjct: 497 VYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHP 553
Score = 332 (121.9 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 1255 DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1314
D+++ G K I+FSQ+T LD+++ L+ + I + R DG M+ AR+K++ +
Sbjct: 665 DTVR-GLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ 723
Query: 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374
V++ SLK +LGLN+ A V+L D+WWNP E+QAIDR HRIGQ R V V +L V+NT+
Sbjct: 724 VLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTI 783
Query: 1375 EDRILALQQKKREMVASAFGEDETGG-QQTRLTVDDLNYLF 1414
E++I+ LQ KR++ A G+ + +LT++DL +LF
Sbjct: 784 EEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLF 824
Score = 125 (49.1 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 29/52 (55%), Positives = 33/52 (63%)
Query: 648 VPLLRHQRIALSWMVQKET-SSLHCSGGILADDQGLGKTISTIALILKERPP 698
+ LL HQ L+W+ +ET S SGGILADD GLGKTI IALIL P
Sbjct: 231 IRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLP 282
Score = 125 (49.1 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
TLVV P S+++QW E++ K SK L+ +VYHG+SR K + ++DVVITTY I+ E
Sbjct: 291 TLVVAPLSLIKQWESEVQTK--SK--LTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE 346
Score = 39 (18.8 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1175 KLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTV 1210
K ++ P+ + Y SSKI+ L++L + +TV
Sbjct: 633 KGIQDPN-DKTLYKSSKIREILKILSLDEQEEDDTV 667
Score = 37 (18.1 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 710 LETLNLDEEDNGIQVNGL 727
L+ L+LDE++ V GL
Sbjct: 653 LKILSLDEQEEDDTVRGL 670
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 290 (107.1 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 68/182 (37%), Positives = 107/182 (58%)
Query: 1238 LDNISDENEKIA-AKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1294
L IS E+ K++ + +I+ E K++V SQWT ML ++ L+ ++Y LDG+
Sbjct: 988 LFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGS 1047
Query: 1295 MSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
++ R V++FN P+ VM++SL A +GLN+ H+ LLD+ WNP EDQA DR
Sbjct: 1048 VNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDR 1107
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDETGGQQTRLTVDDLNY 1412
+R+GQ + V + R + TVE++IL LQ +K+ + G+ ET ++LT+ DL
Sbjct: 1108 IYRVGQKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVLAGKGET----SKLTLADLKT 1163
Query: 1413 LF 1414
LF
Sbjct: 1164 LF 1165
Score = 286 (105.7 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 61/149 (40%), Positives = 89/149 (59%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 728 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 787
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 1002
PF YK + K + N KG +L + ++++LRRTK L G+P+++LP + +
Sbjct: 788 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSM 843
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
L Q+ + EE+ Y+ L SR + Y
Sbjct: 844 QLHQLKLSAEEQSVYNVLFARSRSTLQSY 872
Score = 163 (62.4 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 759 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 818
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 640 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 698
Query: 819 VSMEVP 824
+S EVP
Sbjct: 699 LSKEVP 704
Score = 163 (62.4 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 69/234 (29%), Positives = 107/234 (45%)
Query: 497 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCKSHVDDEPDICILEDI 555
+T+N + L + + E++ A L +S ++I+ + EP +
Sbjct: 415 ATVNIQVLPDKGQRLVKEVQDLEAALSALNISTTDTIEKGENSASGGRCGEP---LPNSF 471
Query: 556 SQPARSN--QSLVLGKTLSMNRSACSNH--SVALGKPVVTSQ-HSSYSDYPGYPGVPLTG 610
S+P + L LG + S+ +H + ALG S G +T
Sbjct: 472 SRPGGTKLITPLPLGDHKAGTSSSSHSHPSAAALGSSEYFGHGFGMNSGVQNLYGGRMTE 531
Query: 611 --LGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 668
+ + S SD L +++ A A P G L VPLL HQR AL+W++ +E S
Sbjct: 532 VRIRAVHSAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQ 589
Query: 669 LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
C GGILADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 590 RPC-GGILADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 638
Score = 63 (27.2 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 1024 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNSLLRSSVEMA 1077
S+ +F + + + ++L MLLRLRQ C H L+K D +L + ++
Sbjct: 901 SQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS 955
Score = 46 (21.3 bits), Expect = 1.2e-70, Sum P(6) = 1.2e-70
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 394 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 450
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 451 DLILESKRARFCQEICDGSSSRSPI 475
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 45 (20.9 bits), Expect = 1.5e-21, Sum P(4) = 1.5e-21
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPE 530
K +LD + + + RSM H LKLS E
Sbjct: 825 KDQLDSTGKPL-VSLPQRSMQLHQLKLSAE 853
Score = 37 (18.1 bits), Expect = 1.0e-69, Sum P(6) = 1.0e-69
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 28 DMDTLLGILEEEKQPDRVKSSPGDLS 53
D + G + E K+ + V+ PG S
Sbjct: 226 DKEKYGGSVRESKKSEHVEKEPGGRS 251
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 290 (107.1 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 68/182 (37%), Positives = 107/182 (58%)
Query: 1238 LDNISDENEKIA-AKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1294
L IS E+ K++ + +I+ E K++V SQWT ML ++ L+ ++Y LDG+
Sbjct: 971 LFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGS 1030
Query: 1295 MSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
++ R V++FN P+ VM++SL A +GLN+ H+ LLD+ WNP EDQA DR
Sbjct: 1031 VNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDR 1090
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDETGGQQTRLTVDDLNY 1412
+R+GQ + V + R + TVE++IL LQ +K+ + G+ ET ++LT+ DL
Sbjct: 1091 IYRVGQKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVLAGKGET----SKLTLADLKT 1146
Query: 1413 LF 1414
LF
Sbjct: 1147 LF 1148
Score = 286 (105.7 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 61/149 (40%), Positives = 89/149 (59%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 711 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 770
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 1002
PF YK + K + N KG +L + ++++LRRTK L G+P+++LP + +
Sbjct: 771 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSM 826
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
L Q+ + EE+ Y+ L SR + Y
Sbjct: 827 QLHQLKLSAEEQSVYNVLFARSRSTLQSY 855
Score = 163 (62.4 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 759 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 818
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 623 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 681
Query: 819 VSMEVP 824
+S EVP
Sbjct: 682 LSKEVP 687
Score = 162 (62.1 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S SD L +++ A A P G L VPLL HQR AL+W++ +E S C GGI
Sbjct: 522 SAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQRPC-GGI 578
Query: 676 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
LADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 579 LADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 621
Score = 63 (27.2 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 1024 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNSLLRSSVEMA 1077
S+ +F + + + ++L MLLRLRQ C H L+K D +L + ++
Sbjct: 884 SQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS 938
Score = 46 (21.3 bits), Expect = 1.4e-70, Sum P(6) = 1.4e-70
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 394 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 450
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 451 DLILESKRARFCQEICDGSSSRSPI 475
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 45 (20.9 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPE 530
K +LD + + + RSM H LKLS E
Sbjct: 808 KDQLDSTGKPL-VSLPQRSMQLHQLKLSAE 836
Score = 37 (18.1 bits), Expect = 1.2e-69, Sum P(6) = 1.2e-69
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 28 DMDTLLGILEEEKQPDRVKSSPGDLS 53
D + G + E K+ + V+ PG S
Sbjct: 226 DKEKYGGSVRESKKSEHVEKEPGGRS 251
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 322 (118.4 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 74/182 (40%), Positives = 116/182 (63%)
Query: 1239 DNISDENEKIAAKCSIDSI-----KLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1293
DN + + KI KC ++ I K GEK IVFSQ+T + DL+ L++ I++ R DG
Sbjct: 919 DNGFESSAKIH-KC-LEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDG 976
Query: 1294 TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
TMS+ ++ +K+F + +V+++SL+A + GL + A HV ++D +WNP E+QA+ R
Sbjct: 977 TMSMDVKNNVIKEFYQSSK-NVLLLSLRAGNAGLTLTCANHVFIMDPFWNPFVEEQAMGR 1035
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQ-TRLTVDDLNY 1412
AHRIGQTR V V R+ + TVE+RI+ LQ+ K+ ++ SA DE G + ++L +L +
Sbjct: 1036 AHRIGQTREVFVHRVLIAGTVENRIMELQESKKHLIESAL--DERGMKSISQLNRRELGF 1093
Query: 1413 LF 1414
LF
Sbjct: 1094 LF 1095
Score = 317 (116.6 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 75/179 (41%), Positives = 109/179 (60%)
Query: 892 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 951
R++LDEAQ+IKN + ++A LRA+ R+CL+GTP+QN I++LY RFL+ P+ +
Sbjct: 575 RIILDEAQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQPYCSEE 634
Query: 952 SFCSMIKVPI-SKNPV-------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
F + I PI SK + + KK+Q +LK+I+LRRTK +L+DG PI+NLP K ++
Sbjct: 635 KFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNLPEKHVL 694
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
V ++E +Y +E SR Q G +N L +LLRLRQAC H LV+
Sbjct: 695 SDYVTLENDELAYYQSIE--SRVQKAAKKILGEHTKN-APALTLLLRLRQACCHSYLVE 750
Score = 137 (53.3 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 638 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693
E + P+ L V LL+HQR+ L+WM + E S GGILADD GLGKTI T+AL++
Sbjct: 415 EPTPPE--LKVNLLKHQRMGLTWMKRMEASK--AKGGILADDMGLGKTIQTLALMM 466
Score = 114 (45.2 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAK-FDVVITTYSIVSM 821
L+V P S+LRQW E+ +K S LSV +YHG + K +L K +D+V+ +Y+ +
Sbjct: 473 LIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTLVQ 532
Query: 822 EVPK 825
E K
Sbjct: 533 EWKK 536
Score = 57 (25.1 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 1066 SNSLL--RSSVEMAKKLPQ--ERQMY-LLNCL--EASLA---ICGICND--PPEDAVVSI 1113
SNS L RS + A+ L + ++Q++ L+ L E ++ C +C D E +++
Sbjct: 768 SNSKLDWRSMLNNARNLKESVKQQVHSLIGSLNGEGNIENTPACPVCFDNIDIESSLLIF 827
Query: 1114 --CGHVFCNQCIC----ERLTA--DDNQCPTR--NCK 1140
CGH+ C C C E A DD++ P R CK
Sbjct: 828 GECGHIICKGC-CNTFFENCNAGDDDDESPHRIGECK 863
Score = 49 (22.3 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 41/183 (22%), Positives = 68/183 (37%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYL 330
DP + ++ T K ++ E+ S+ +A P + S P I
Sbjct: 23 DPQPSSPASFVTGNGTDVKQATDQHEYKNPFPTISAVNSASANTLPLRPSFSHQPPIK-- 80
Query: 331 DAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 390
+ + S+N P N N + + A+P T R V A + +DD
Sbjct: 81 KPRLESLHSRNTSPFSLNHNINNNNMNPQLLARPIT-----KPREPIEVIALSDSDDDKK 135
Query: 391 PCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE 450
P + + +E +DE N S+ D SF D S PS + +Q V K + E
Sbjct: 136 PDNESDDEDIEVLDEQQVANISWKD--TSF---DQSNSI----PSTTTSHQQVTEKLKPE 186
Query: 451 DLI 453
++
Sbjct: 187 PVL 189
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 305 (112.4 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 61/155 (39%), Positives = 94/155 (60%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
G +K+++ SQWT ML ++ LK + + Y +DG+++ R V+ FN VM++S
Sbjct: 984 GSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLIS 1043
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1044 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKIL 1103
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+KK+++ E G T+LT+ DL LF
Sbjct: 1104 QLQEKKKDLAKQVLSGSE--GPVTKLTLADLKILF 1136
Score = 264 (98.0 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 59/168 (35%), Positives = 96/168 (57%)
Query: 867 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 924
+KQ+ G L + + PL +V W R++LDEA ++KN R Q + A L+A+ RW ++
Sbjct: 682 TKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVT 741
Query: 925 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 984
GTPIQN + D+YS +FLR PF + S+ K + +KG ++L + K+++LRRT
Sbjct: 742 GTPIQNNLLDMYSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRT 797
Query: 985 KGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
K L G+P++ LP + L ++ +++ER Y SR + Y
Sbjct: 798 KDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSY 845
Score = 159 (61.0 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 760 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 819
++GTL+VCP S++ W E+ +VTS L + +YHG +R++ L+ +D+VITTYS++
Sbjct: 617 SSGTLIVCPASLIHHWKNEVEKRVTSN-RLRIYLYHGPNRSRHAKVLSTYDIVITTYSLL 675
Query: 820 SMEVP 824
+ E+P
Sbjct: 676 AKEIP 680
Score = 147 (56.8 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 64/223 (28%), Positives = 102/223 (45%)
Query: 497 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS 556
+ +N + L E + +I+ A L LSPE Q C + EP+ +I+
Sbjct: 405 AAVNIQALPDKGEKLLKQIQALEDALSALALSPE--QGTKEKCSAQ---EPE---QSNIT 456
Query: 557 QPARSNQSLVLGKTLSMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVP-LTGLGGM 614
+ A + LV + L S+ + G+ S S G+ L + +
Sbjct: 457 KAAAAPLHLVPPQPLPRPLIQPASSLGLKAGRQETPEGASQCSG--GHMNQHHLYNVWKI 514
Query: 615 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGG 674
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GG
Sbjct: 515 TSEAIDE---LHRSLKSCPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GG 568
Query: 675 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 717
ILADD GLGKT++ IALIL ++ E + + L+ ++
Sbjct: 569 ILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKND 611
Score = 62 (26.9 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1033 AAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
AA + + + V++L LLRLRQ C H L+K
Sbjct: 881 AADSQRPSTVHVLSQLLRLRQCCCHLSLLK 910
Score = 54 (24.1 bits), Expect = 8.5e-69, Sum P(6) = 8.5e-69
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 38 EEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAES-GGLGDSSSQLEPT 96
E+ + D V S PG L + + D + HS+ +Q ++ A GDSS +P
Sbjct: 331 EDSEDDGVSSRPGSPLLFDSTVDSQKKGSLQHSDQSVQRQMPAASGVSKKGDSS---DPA 387
Query: 97 EQKCS 101
Q+ +
Sbjct: 388 AQRAN 392
Score = 37 (18.1 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 866 GSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 908
G K+G +L I GP R V ++ ++++ TQ+
Sbjct: 212 GMASKQGHGEVLQGIPKGPHMSESESRGVPNKPETLREKETQL 254
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 349 (127.9 bits), Expect = 2.1e-67, Sum P(4) = 2.1e-67
Identities = 71/152 (46%), Positives = 100/152 (65%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
KAIVFSQ+T LDL+ +L S + +L G+MS A+D A+K+F P+ V++MSL+A
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQA 586
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+ LN+ AA HV ++D WWNP E QA DR HRIGQ +PV V+R ++ TVE++IL LQ
Sbjct: 587 GGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQ 646
Query: 1383 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+KK ++ S G+ E Q +L DD+ LF
Sbjct: 647 KKKEDLFESTLGDSEEAVVQ-KLGEDDIKSLF 677
Score = 248 (92.4 bits), Expect = 2.1e-67, Sum P(4) = 2.1e-67
Identities = 67/209 (32%), Positives = 107/209 (51%)
Query: 878 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 937
+D PL + W R+++DEA IKN ++ A+A + L A RW LSGTP+QN +D+LYS
Sbjct: 257 VDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 938 Y--FRFLRYDPFAVYKSFCSM-IKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 994
+ FL + ++ Y SF + ++N + +L + R + + I
Sbjct: 317 LVSYSFLNFF-YSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPVRIEN--VPAVLI 373
Query: 995 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQA 1054
+ + + ++ + E DFY L S+ F Y AGT+ NY +I +L+RLRQA
Sbjct: 374 MQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQA 433
Query: 1055 CDHPLLVKGFDSNSLLRSSVEMAKKLPQE 1083
DHP LV + S S +++ A K +E
Sbjct: 434 VDHPYLVS-YSSPSGANANLLDANKNEKE 461
Score = 145 (56.1 bits), Expect = 2.1e-67, Sum P(4) = 2.1e-67
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 752 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 810
V++AK R A G TLV+ P L QW +E+ +++TS GS VL YHG R K+ +L +D
Sbjct: 180 VDRAKSREAVGHTLVLVPPVALSQWLDEI-SRLTSPGSTRVLQYHGPKRDKNVQKLMNYD 238
Query: 811 VVITTYSIVSMEVPK 825
V+TT IV E K
Sbjct: 239 FVLTTSPIVENEYRK 253
Score = 123 (48.4 bits), Expect = 2.1e-67, Sum P(4) = 2.1e-67
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 637 AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
AEA+ L +PLL++Q+ L+W +E S++ GGILAD+ G+GKTI I+L+L R
Sbjct: 121 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVR--GGILADEMGMGKTIQAISLVLARR 178
Score = 121 (47.7 bits), Expect = 3.4e-54, Sum P(4) = 3.4e-54
Identities = 37/104 (35%), Positives = 50/104 (48%)
Query: 1013 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRS 1072
E DFY L S+ F Y AGT+ NY +I +L+RLRQA DHP LV + S S +
Sbjct: 392 EADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVS-YSSPSGANA 450
Query: 1073 SVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGH 1116
++ A K +E CG +DP +D V+ H
Sbjct: 451 NLLDANKNEKE---------------CGFGHDPSKDYFVTSSEH 479
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 285 (105.4 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 61/181 (33%), Positives = 102/181 (56%)
Query: 1236 DTLDNISDENEKIAAKCSIDSIK--LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1293
+ DN ++ + +++I+ G +K+++ SQWT ML ++ LK + Y ++G
Sbjct: 970 ELFDNTRASSKISSLLVELEAIRGNSGSQKSVIVSQWTSMLQIVAWHLKKRGLTYATING 1029
Query: 1294 TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
++ R V+ FN+ VM++SL A +GLN+ H+ LLD+ WNP+ EDQA DR
Sbjct: 1030 SVRPKQRMDLVEAFNSSRSPQVMLISLSAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1089
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
+R+GQ + V V + + TVE++IL LQ+KK+ + +G +LT+ DL L
Sbjct: 1090 IYRVGQQKDVVVHKFICEGTVEEKILHLQEKKKTLAKQVLSG--SGTSVKKLTLADLKVL 1147
Query: 1414 F 1414
F
Sbjct: 1148 F 1148
Score = 269 (99.8 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 56/158 (35%), Positives = 91/158 (57%)
Query: 879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 938
DI PL ++ W R++LDEA ++N R Q + A L+A RW ++GTPIQN + D+YS
Sbjct: 706 DIAKTPLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSL 765
Query: 939 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINL 997
+FLR PF ++ + K + KG ++L + K+++LRRTK L G+P++ L
Sbjct: 766 LKFLRCSPFDDFQLW----KSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVML 821
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1035
P + + ++ +++E + YS L SR + Y AG
Sbjct: 822 PQRQFHVHRLKLSEDEENVYSVLLAKSRSALQSYLKAG 859
Score = 169 (64.5 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 44/102 (43%), Positives = 60/102 (58%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
SKA DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ H GGI
Sbjct: 524 SKAIDE---LHESLESRPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPH--GGI 577
Query: 676 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 717
LADD GLGKT++ IALIL ++ E+D L L+ D+
Sbjct: 578 LADDMGLGKTLTMIALILTQKNREKTKEEDKNVALTWLSKDD 619
Score = 151 (58.2 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 762 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 821
GTL++CP S++ W E+ +V+S +L V +YHG +R + L+ +D+VITTY++++
Sbjct: 627 GTLIICPASLIHHWKNEVMKRVSSN-TLRVCLYHGPNRDQRAKVLSTYDIVITTYNLLAK 685
Query: 822 EVPKQ 826
E+P Q
Sbjct: 686 EIPTQ 690
Score = 56 (24.8 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 1044 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 1103
+L LLRLRQ C H SLL+S+++ A+ + + L L A + + +C+
Sbjct: 904 LLTRLLRLRQCCCHL---------SLLKSALDPAELKSEGLALSLEEQLSA-MTLSEVCD 953
Query: 1104 DPPEDAVVSICGHVF 1118
P ++S+ G F
Sbjct: 954 MEPSP-IISLNGERF 967
Score = 56 (24.8 bits), Expect = 3.4e-55, Sum P(5) = 3.4e-55
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDE 61
AWL S ADD GL + T++ ++ +K ++ K +++L LS+D+
Sbjct: 563 AWLLWRESQKPHGGILADDMGLGKTL-TMIALILTQKNREKTKEEDKNVALTWLSKDD 619
Score = 40 (19.1 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
Identities = 35/142 (24%), Positives = 55/142 (38%)
Query: 421 PFK--DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 478
PFK D Q PSL Q K E E+ +++ K+ + D R P
Sbjct: 124 PFKVLDKNQE-----PSLWKQ----FTKGEGEEKMVDKKQKEKGDVLLDQKEERKPEPNC 174
Query: 479 HLSLNLNGS-----RQYFPYAQP----STLNK--KELDGVKEDMEAEIKTRSMASHLLKL 527
+ NL+ +Q P Q + L KE G+ + +E+K++ L+
Sbjct: 175 CMKKNLSSGLEVKKKQPAPQEQQRGEKTELQHEAKENKGMHKRNLSEVKSKQCHVEELRK 234
Query: 528 SPESIQSNSSDCKSHVD--DEP 547
S+Q S+ HV+ EP
Sbjct: 235 PSGSLQVKSNIESHHVEKKSEP 256
Score = 39 (18.8 bits), Expect = 9.8e-21, Sum P(4) = 9.8e-21
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 329 YLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAK 382
YL A R+ + +G GN S + G PC + S T ++ +
Sbjct: 855 YLKAGREGGGNLSGRSP-GNPFSKVAQEFGSSRPGPCVAADSQRPGTPHLLLTR 907
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 341 (125.1 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 67/153 (43%), Positives = 98/153 (64%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
K+IVFSQ+T MLDL++ LK + +L G+MS RD +K F EV V ++SLKA
Sbjct: 701 KSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEVEVFLVSLKA 760
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+ LN+ A V L+D WWNP+ E Q++DR HRIGQ RP+ + R +++++E +I+ LQ
Sbjct: 761 GGVALNLCEASQVFLMDPWWNPSVEWQSMDRVHRIGQKRPIRITRFCIEDSIESKIIELQ 820
Query: 1383 QKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415
+KK M+ + D+ +RLT DDL +LFM
Sbjct: 821 EKKANMIHATINNDDAA--ISRLTPDDLQFLFM 851
Score = 201 (75.8 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 61/216 (28%), Positives = 105/216 (48%)
Query: 966 VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 1025
++G+ L+++L +MLRRTK D + LPP+V+ +++ F +EE+D Y L +S+
Sbjct: 485 LEGFNNLRSLLDHVMLRRTKIERADD---LGLPPRVVEIRRDFFNEEEKDLYQSLYSDSK 541
Query: 1026 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVKGFDSNSLLRS--SVEMAKKLPQ 1082
+F +Y A G V NY NI ++ R+RQ DHP L++K SN++ V M +
Sbjct: 542 RKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGVIMCQLCDD 601
Query: 1083 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1142
E + + + + C +C ++ + + C C L+ D Q P I
Sbjct: 602 EAEEPIES--KCHHRFCRMCIQEYMESFMGASNKLECPVCHIG-LSIDLEQ-PA----IE 653
Query: 1143 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE 1178
+ +F+KA++ N + G E + LVE
Sbjct: 654 VD-EELFTKASIVNRIKSGAHGGEWRSSTKIEALVE 688
Score = 182 (69.1 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 871 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 930
K +GL+ + A + + ++RV+LDEA +IK+ + +RA L K+RWCL+GTP+QN
Sbjct: 356 KRKNGLVKEKSA--IHNIEFYRVILDEAHNIKDRNSNTSRAAGKLNTKKRWCLTGTPLQN 413
Query: 931 AIDDLYSYFRFLRYDPFAVYKSFCS 955
I ++YS R+++ DPF Y FC+
Sbjct: 414 RIGEMYSLIRYMKLDPFHSY--FCT 436
Score = 144 (55.7 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 709 QLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVC 767
QLE LN L ++++G + NG ++ E + + + F +++KG P LV+
Sbjct: 244 QLEGLNWLIKQEDG-EFNG-GILADEMGMGKTI---QTIGLFMH-DRSKG-P---NLVIG 293
Query: 768 PTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQP 827
PT L QW E+ K T G L VL+YHGS+R+ EL+++DV++T+YS++ KQ
Sbjct: 294 PTVALMQWKNEIE-KHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVYRKQN 352
Query: 828 LG 829
G
Sbjct: 353 YG 354
Score = 112 (44.5 bits), Expect = 5.5e-63, Sum P(6) = 5.5e-63
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
A P G + + LL Q L+W++++E + GGILAD+ G+GKTI TI L + +R
Sbjct: 230 AEHPPG-MTIKLLPFQLEGLNWLIKQEDGEFN--GGILADEMGMGKTIQTIGLFMHDR 284
Score = 100 (40.3 bits), Expect = 6.6e-56, Sum P(6) = 6.6e-56
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 1098 ICGICNDPPEDAVVSICGHVFCNQCICERL-----TADDNQCPTRNCKIRLSLSSVFSKA 1152
+C +C+D E+ + S C H FC CI E + ++ +CP C I LS+ +
Sbjct: 595 MCQLCDDEAEEPIESKCHHRFCRMCIQEYMESFMGASNKLECPV--CHIGLSID--LEQP 650
Query: 1153 TLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 1206
+ + +E+ T S +++ + G W +S+KI+A +E L L R
Sbjct: 651 AI-------EVDEELFTKASIVNRIKSGAHGGEWRSSTKIEALVEELYKLRSDR 697
Score = 45 (20.9 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 16/74 (21%), Positives = 24/74 (32%)
Query: 318 KGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQ 377
K AID D D +P+ GKR+ + S+ RT
Sbjct: 144 KNGSTSAEAIDLADDLDLNNDPDENVPLASRKAPKKRAKGGKRTKKEPKPKMSYYERTTN 203
Query: 378 MVFAKDEGNDDLFP 391
+F ++FP
Sbjct: 204 RLFEHHPSLKEVFP 217
Score = 37 (18.1 bits), Expect = 2.8e-66, Sum P(6) = 2.8e-66
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 VSAADEFADDQGLSIDMDTLLGI 35
+S A+ D + SID DT +
Sbjct: 50 ISYAESSDDQESDSIDSDTFANV 72
Score = 37 (18.1 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1220 NGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1263
NGS ++ DL L+N DEN +A++ + GG++
Sbjct: 145 NGSTSA--EAIDLADDLDLNNDPDENVPLASRKAPKKRAKGGKR 186
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 297 (109.6 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 60/155 (38%), Positives = 95/155 (61%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
G +K+++ SQWT ML+++ LK + Y +DG+++ R V+ FN+ VM++S
Sbjct: 1015 GSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLIS 1074
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1075 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKIL 1134
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1135 QLQEKKKDLAKQILSG--SGEFVTKLTLADLKILF 1167
Score = 273 (101.2 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 59/169 (34%), Positives = 98/169 (57%)
Query: 867 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 923
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 711 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 770
Query: 924 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 983
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 771 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 826
Query: 984 TKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
TK L G+P++ LP + L ++ +++E Y+ L SR + Y
Sbjct: 827 TKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDLQSY 875
Score = 143 (55.4 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 650 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Query: 823 VP 824
+P
Sbjct: 709 IP 710
Score = 137 (53.3 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 597
Query: 676 L--ADDQGLGKTISTIALILKERPPSFRTEDD 705
L ADD GLGKT++ IALIL ++ E D
Sbjct: 598 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 629
Score = 60 (26.2 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 1034 AGTVK-QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
AG ++ + V+IL LLRLRQ C H L+K + L+S + L ++ L+ L
Sbjct: 912 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLVLSLEEQLSALTLSEL 970
Query: 1093 E-----ASLAICGIC 1102
AS+++ G C
Sbjct: 971 HSSESSASVSLNGTC 985
Score = 52 (23.4 bits), Expect = 1.2e-65, Sum P(6) = 1.2e-65
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 547
KEL+G+ + E+K+R + L+ P S ++ + D + EP
Sbjct: 210 KELEGMHQRKVFEMKSRQVHKDELREPPVSQETANGDSYIRKESEP 255
Score = 45 (20.9 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 1090
+A GT QN + + LL+ + C P FD SL +S V+ K ER LN
Sbjct: 768 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFSLWKSQVDNGSKKGGER----LN 816
Query: 1091 CLEASLAI 1098
L SL +
Sbjct: 817 ILTKSLLL 824
Score = 41 (19.5 bits), Expect = 6.6e-55, Sum P(5) = 6.6e-55
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + T++ ++ +K ++ K S LS+ + + SH L
Sbjct: 601 ADDMGLGKTL-TMIALILTQKNQEKNKEKDKTTSSTWLSKTDS-SEFTSHRTL 651
Score = 41 (19.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1127 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS-DSKLVE 1178
L D+ Q P C + LSS +++ ++Q G++ T++ D+K +E
Sbjct: 163 LDQDNVQKPESKCWMEKDLSSGLVVKEKPSAVQEKQRGEK--TEFQCDTKELE 213
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 297 (109.6 bits), Expect = 6.9e-65, Sum P(5) = 6.9e-65
Identities = 60/155 (38%), Positives = 95/155 (61%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
G +K+++ SQWT ML+++ LK + Y +DG+++ R V+ FN+ VM++S
Sbjct: 993 GSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLIS 1052
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1053 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKIL 1112
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1113 QLQEKKKDLAKQILSG--SGEFVTKLTLADLKILF 1145
Score = 273 (101.2 bits), Expect = 6.9e-65, Sum P(5) = 6.9e-65
Identities = 59/169 (34%), Positives = 98/169 (57%)
Query: 867 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 923
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 689 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 748
Query: 924 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 983
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 749 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 804
Query: 984 TKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
TK L G+P++ LP + L ++ +++E Y+ L SR + Y
Sbjct: 805 TKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDLQSY 853
Score = 143 (55.4 bits), Expect = 6.9e-65, Sum P(5) = 6.9e-65
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 628 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Query: 823 VP 824
+P
Sbjct: 687 IP 688
Score = 137 (53.3 bits), Expect = 6.9e-65, Sum P(5) = 6.9e-65
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 522 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 575
Query: 676 L--ADDQGLGKTISTIALILKERPPSFRTEDD 705
L ADD GLGKT++ IALIL ++ E D
Sbjct: 576 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 607
Score = 60 (26.2 bits), Expect = 6.9e-65, Sum P(5) = 6.9e-65
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 1034 AGTVK-QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
AG ++ + V+IL LLRLRQ C H L+K + L+S + L ++ L+ L
Sbjct: 890 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLVLSLEEQLSALTLSEL 948
Query: 1093 E-----ASLAICGIC 1102
AS+++ G C
Sbjct: 949 HSSESSASVSLNGTC 963
Score = 45 (20.9 bits), Expect = 7.3e-40, Sum P(4) = 7.3e-40
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 1090
+A GT QN + + LL+ + C P FD SL +S V+ K ER LN
Sbjct: 746 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFSLWKSQVDNGSKKGGER----LN 794
Query: 1091 CLEASLAI 1098
L SL +
Sbjct: 795 ILTKSLLL 802
Score = 41 (19.5 bits), Expect = 5.7e-55, Sum P(5) = 5.7e-55
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + T++ ++ +K ++ K S LS+ + + SH L
Sbjct: 579 ADDMGLGKTL-TMIALILTQKNQEKNKEKDKTTSSTWLSKTDS-SEFTSHRTL 629
Score = 41 (19.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1127 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS-DSKLVE 1178
L D+ Q P C + LSS +++ ++Q G++ T++ D+K +E
Sbjct: 163 LDQDNVQKPESKCWMEKDLSSGLVVKEKPSAVQEKQRGEK--TEFQCDTKELE 213
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 293 (108.2 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 63/174 (36%), Positives = 104/174 (59%)
Query: 1244 ENEKIAAKCS-IDSIKLGG--EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
E+ KI++ + +++I+ +K+++ SQWT ML ++ LK + Y +DG+++ R
Sbjct: 989 ESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQR 1048
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V+ FN VM++SL A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ
Sbjct: 1049 MDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQ 1108
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+ V + R + TVE++IL LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1109 KDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG--SGESVTKLTLADLRVLF 1160
Score = 251 (93.4 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 56/168 (33%), Positives = 92/168 (54%)
Query: 867 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 924
+KQ+ G L++ + PL ++ W R++LDEA ++KN R Q + A L+A RW ++
Sbjct: 706 NKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVT 765
Query: 925 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 984
GTPIQN + D+YS +FLR PF + + S + KG ++L + K+++LRRT
Sbjct: 766 GTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV----DNGSKKGGERLSILTKSLLLRRT 821
Query: 985 KGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
K L G P++ LP + L + +++E Y+ SR + Y
Sbjct: 822 KDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 869
Score = 151 (58.2 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 762 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 821
GTL++CP S++ W E+ +V S L V +YHG +R L+ +D+VITTYS+V+
Sbjct: 643 GTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAK 701
Query: 822 EVP 824
E+P
Sbjct: 702 EIP 704
Score = 149 (57.5 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 698
A P G L VPLL HQ+ AL+W++ +E+ GGILADD GLGKT++ IALIL ++
Sbjct: 560 AEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTQKNQ 616
Query: 699 SFRTEDDNKRQLETLNLDE 717
+ E + L L+ D+
Sbjct: 617 EKKEEKEKSTALTWLSKDD 635
Score = 68 (29.0 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 1020 LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
LE S + + AA + + + V+IL LLRLRQ C H L+K
Sbjct: 893 LEFGSEEP-RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLK 934
Score = 57 (25.1 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
AWL S + ADD GL + T++ ++ +K ++ + +L LS+D+
Sbjct: 579 AWLLWRESQKPQGGILADDMGLGKTL-TMIALILTQKNQEKKEEKEKSTALTWLSKDDSC 637
Query: 64 QDVGSHSNL 72
D SH L
Sbjct: 638 -DFTSHGTL 645
Score = 42 (19.8 bits), Expect = 8.3e-65, Sum P(6) = 8.3e-65
Identities = 31/128 (24%), Positives = 50/128 (39%)
Query: 516 KTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI----CILEDISQPARSNQSLVLGKTL 571
K +S+ + IQ + +H D +I C ++++P+ S+Q GK+
Sbjct: 186 KKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQ 245
Query: 572 SMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVPL----TGLGGMKSKASDERLILQ 626
+ R S V P H+S S P G PL T ++KA D I Q
Sbjct: 246 DVQRESEPLREKVTQLLPQNVHSHNSISK-P-QKGGPLNKEYTNWEAKETKAKDGPSI-Q 302
Query: 627 VAMQGISQ 634
+ + Q
Sbjct: 303 ATQKSLPQ 310
Score = 42 (19.8 bits), Expect = 7.6e-41, Sum P(5) = 7.6e-41
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 1090
+A GT QN + + LL+ + C P FD +L RS V+ K ER L
Sbjct: 762 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFNLWRSQVDNGSKKGGERLSILTK 814
Query: 1091 CL 1092
L
Sbjct: 815 SL 816
Score = 38 (18.4 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 1155 NNSLSQRQPGQEIPTDYSDSKLVEAPSCEG 1184
+NS+S+ Q G + +Y++ + E + +G
Sbjct: 269 HNSISKPQKGGPLNKEYTNWEAKETKAKDG 298
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 297 (109.6 bits), Expect = 1.3e-64, Sum P(5) = 1.3e-64
Identities = 76/200 (38%), Positives = 110/200 (55%)
Query: 879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 938
D AG + V W+R++LDEA +IKN + +A + L A+ RWCLSGTP+QN +D+L S
Sbjct: 487 DKKAG-IFSVYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLDELQSL 545
Query: 939 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGY--KKLQAVLKTIMLRRTKGTL-------- 988
RFLR P+ ++ I P++ N G ++LQ VLK M RRTK L
Sbjct: 546 IRFLRIKPYNDLANWKDQITRPLA-NGRGGLAIERLQVVLKAFMKRRTKDVLKLNANLKP 604
Query: 989 ---LDGE---PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYV 1042
DGE P + + ++ VDF E++FY +LE + + ++ G K +Y
Sbjct: 605 GEEADGEKKNPGFQIVKREVVKVAVDFMPGEKNFYERLEQRTDNSLEKMM--GDSKIDYA 662
Query: 1043 NILLMLLRLRQACDHPLLVK 1062
L +LLRLRQ C+HP LV+
Sbjct: 663 GALTLLLRLRQCCNHPDLVR 682
Score = 295 (108.9 bits), Expect = 1.3e-64, Sum P(5) = 1.3e-64
Identities = 73/190 (38%), Positives = 112/190 (58%)
Query: 1228 DSND---LHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1284
DS+D L+ GD + + KI I + K IVFS +T MLD +E L +
Sbjct: 880 DSDDDIYLNPGDDENQVLPST-KIRQLMKILRREAPDFKFIVFSVFTSMLDKIEPFLSRA 938
Query: 1285 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
I Y R DG+M R+ +++ V++ SL+A +LGLN+ AA V++L+ +WNP
Sbjct: 939 GIGYARYDGSMRNDLREASLEKLRNHRGTRVLLCSLRAGALGLNLTAASRVVILEPFWNP 998
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTR 1404
E+QAIDR HR+ QT V + ++ +K+TVE+RIL LQ++KRE+ A+ E +T +
Sbjct: 999 FVEEQAIDRVHRLNQTVDVKIYKMIIKDTVEERILDLQERKREL-ANVTIEGKTAA--AK 1055
Query: 1405 LTVDDLNYLF 1414
LT++D+ LF
Sbjct: 1056 LTMNDMMALF 1065
Score = 147 (56.8 bits), Expect = 1.3e-64, Sum P(5) = 1.3e-64
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 734 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLV 793
SD+ R P + +S KG + TLVV P ++++QW E++ KV L VLV
Sbjct: 393 SDHDRK-PEDTDEESAESRNLPKGL-SKSTLVVAPLALIKQWESEIKTKVEPSHRLRVLV 450
Query: 794 YHGSSRTKDPCELAKFDVVITTYSIVSME 822
YHG++R K L +DVVITTY ++ E
Sbjct: 451 YHGNARAKATDSLDDYDVVITTYGTLTSE 479
Score = 130 (50.8 bits), Expect = 1.3e-64, Sum P(5) = 1.3e-64
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 633 SQPNAEASAPDGV---LAVPLLRHQRIALSWMVQKETSSLHC---------SGGILADDQ 680
++ ++E DGV L V LL HQR ++WM KE SL GGILADD
Sbjct: 305 TEEDSEDEDDDGVVEGLRVQLLPHQRQGVNWMCAKEIGSLKPRKEEKGVLPKGGILADDM 364
Query: 681 GLGKTISTIALILKERPPSFRTEDDNKRQ 709
GLGKT+ IAL+L + P +D ++RQ
Sbjct: 365 GLGKTVQAIALMLTNQKP----KDGSRRQ 389
Score = 43 (20.2 bits), Expect = 7.7e-45, Sum P(5) = 7.7e-45
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 497 STLNKKELDGVKEDMEAEIKTRSMASHLLKL 527
STL L +K+ E+EIKT+ SH L++
Sbjct: 419 STLVVAPLALIKQ-WESEIKTKVEPSHRLRV 448
Score = 42 (19.8 bits), Expect = 7.7e-45, Sum P(5) = 7.7e-45
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNL 72
ADD GL + + +L +K D + P LS + ++ ++ NL
Sbjct: 361 ADDMGLGKTVQAIALMLTNQKPKDGSRRQPA-LSDHDRKPEDTDEESAESRNL 412
Score = 38 (18.4 bits), Expect = 1.3e-64, Sum P(5) = 1.3e-64
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 1191 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1238
K KA+ + A P + N R N I D + G+ L
Sbjct: 776 KKKASEHIADPTASPSERRLQNRMARFRRNRKIVMDSDDEEEDDGEWL 823
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 332 (121.9 bits), Expect = 1.9e-64, Sum P(5) = 1.9e-64
Identities = 89/271 (32%), Positives = 139/271 (51%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
++R++LDE Q+IKN T+ ++AC + RW LSGTPIQN++D+LYS RFLR P+
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 950 YKSFCSMIKVPISKNPVKGY---------KKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
+ F I +N Y +K++ +L IMLRR+K +DG+P++ LPPK
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPK 1221
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-L 1059
++ + + EE FY+ LE ++ K+ T + +Y ++L +LLRLRQAC H L
Sbjct: 1222 IVEVDESRLKGEELKFYTALESKNQALAKKLLNNST-RGSYSSVLTLLLRLRQACCHSEL 1280
Query: 1060 LVKGFDSNSLLRSSVEMAKKLPQE--RQMYLLNCL--EASLAI--------CGICNDPPE 1107
+V G + V K + R Y + + EA + C C + E
Sbjct: 1281 VVMG--EKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITSMNSMTCFWCMEQLE 1338
Query: 1108 DAVVSI---CGHVFCNQCICERLTADDNQCP 1135
+S+ CGH+ C+ CI E + + P
Sbjct: 1339 PEAMSVLTGCGHLICDTCI-EPFIEESSMLP 1368
Score = 278 (102.9 bits), Expect = 1.9e-64, Sum P(5) = 1.9e-64
Identities = 60/154 (38%), Positives = 96/154 (62%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
EK I+FSQ+T ++LE LK+ + Y + G+M+ R + +F PE ++++S+
Sbjct: 1462 EKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISM 1521
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA + GL + A HV+++D +WNP E+QA DR +RI QT+ V V +L +K++VEDRI
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ++K+EMV SA + + L +L +LF
Sbjct: 1582 LQKRKKEMVDSAMDPGKIK-EVNSLGRRELGFLF 1614
Score = 151 (58.2 bits), Expect = 1.9e-64, Sum P(5) = 1.9e-64
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 622 RLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 681
R +L+ Q S + EA P+ + V LL+HQR+ L W++Q E S+ GG+LADD G
Sbjct: 916 RALLENVKQSESIIDGEALTPED-MTVNLLKHQRLGLHWLLQVENSAK--KGGLLADDMG 972
Query: 682 LGKTISTIALILKER 696
LGKTI IAL+L R
Sbjct: 973 LGKTIQAIALMLANR 987
Score = 105 (42.0 bits), Expect = 1.9e-64, Sum P(5) = 1.9e-64
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSM 821
L+V P SVLR W EL KV + + ++ GS + K +LA++D V+ +Y ++
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLAN 1056
Query: 822 EVPK 825
E K
Sbjct: 1057 EFKK 1060
Score = 48 (22.0 bits), Expect = 1.9e-64, Sum P(5) = 1.9e-64
Identities = 33/140 (23%), Positives = 60/140 (42%)
Query: 473 SPIDGRHLSLNLNG--SRQYF--PYAQPSTL---NKKELDGVKEDMEAEIKTRSMASHLL 525
S +D + LNLN S+Q F P + ++L NK ++ GV ++ S A
Sbjct: 188 SNLDFQEEKLNLNNKPSQQQFSDPETKDNSLKSENKDQIKGVTTTSYRDLPIESSA---- 243
Query: 526 KLSPESIQSNSSDCKSHVDDE---PDI-CILEDISQPARSNQSLVLGKTLSMNRSACSNH 581
Q+NS + ++ +E P + L + ++ + V GKT ++ N+
Sbjct: 244 -FQDSETQNNSKNTIPNIVNEKRTPALPSNLSSVESSLKNETAKVEGKT-TVRLPGLQNN 301
Query: 582 SVALGKPVVTSQHSSYSDYP 601
VAL + + +S+ P
Sbjct: 302 -VALLEQEQSELFKHFSEQP 320
Score = 46 (21.3 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLLK---LSPESIQSNSSDCKSHVD 544
KE G +E +S +S +L+ ++ ++ QS+ +C S +D
Sbjct: 426 KEASGSNSIPTSETDAQSSSSSVLQGTIMTEQATQSSQHECNSSLD 471
Score = 41 (19.5 bits), Expect = 4.3e-53, Sum P(5) = 4.3e-53
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 683 GKTISTIALILKERPPSFRTEDDNKRQLETLNLD 716
G+TIS+ IL + + + KRQL LD
Sbjct: 534 GRTISSTQQILVDEAENQLNKLKEKRQLTKSKLD 567
Score = 41 (19.5 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSI--KN-HRTQVAR 910
+L IV PLAK F +D A+ + KN RT++ +
Sbjct: 665 VLPIVRQPLAKRDLFIKSIDTAKDLLAKNTSRTEMTK 701
Score = 37 (18.1 bits), Expect = 2.6e-63, Sum P(5) = 2.6e-63
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 497 STLNKKELDGVKEDME 512
S+ K+ DGV++D E
Sbjct: 166 SSYVSKDYDGVEDDFE 181
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 278 (102.9 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSL 1320
EK ++ SQWT +L+L+E ++ Y + G + V R + V FN VM++SL
Sbjct: 840 EKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVMLLSL 899
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
A +GLN++ H++++DL WNP E QA DR +R+GQ + V + RL VK T+E R++
Sbjct: 900 TAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLIVKGTIEQRVMD 959
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+KK + AS E + +LT D+ LF
Sbjct: 960 LQEKKLALAASVL-EGTATRKLNKLTTADIRMLF 992
Score = 228 (85.3 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 54/137 (39%), Positives = 78/137 (56%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PLA+V W RV+LDEA +IKN +Q ++A L + RWCLSGTPI N + DLYS RFLR
Sbjct: 544 PLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLR 603
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKV 1001
F K + I +P+ ++ + K +MLRRTK L + I+NL K
Sbjct: 604 IPLFGDRKFWAESI-MPMKTGMAD---RVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKK 659
Query: 1002 IMLKQVDFTDEERDFYS 1018
I + +++ +E + Y+
Sbjct: 660 IEIHELEMVGDEANGYA 676
Score = 157 (60.3 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 74/259 (28%), Positives = 121/259 (46%)
Query: 486 GSRQYFPYAQPSTLNKKELDGVK-EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD 544
GS + P P EL + +++EA K + + LLK S ++ N + K VD
Sbjct: 215 GSPEASPQPSPPKNTASELQKLSIKELEAN-KDKKLK--LLKFS-SNLPDNGARVKLQVD 270
Query: 545 DEPDICILEDISQPARSN--QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG 602
+ I E+I + + ++V+ KT ++ + +A P+ ++ D G
Sbjct: 271 E-----ITEEIERRIINGVTDTMVVDKTTAIPPPPQPKNLIA---PI-PQDFAAMLDKNG 321
Query: 603 YPGVP--LTGLGGMKSKASDERLILQVAMQGISQPNAEAS---APDGVLAVPLLRHQRIA 657
+ +T +K +RL+ Q+A + P AE PDG+L V L+ HQ+
Sbjct: 322 RKVMSGRMTEQKILKVNKISDRLMQQLADATHTIP-AETDLTDTPDGLL-VELMPHQKAG 379
Query: 658 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTED-DNKRQLETLNL 715
L W+V +E H SGGILADD GLGKT+S ++LI+ ++ R E DN E +
Sbjct: 380 LRWLVWREGQP-H-SGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAADKEKRRV 437
Query: 716 DEEDNGIQVNGLDLVKQES 734
+E+ NG ++ S
Sbjct: 438 AKEEGLYPSNGTLIIAPAS 456
Score = 146 (56.5 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 27/67 (40%), Positives = 47/67 (70%)
Query: 759 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTY 816
P+ GTL++ P S++ QW E+ ++ S LSV ++HG+ + + +P ELA++DVVITTY
Sbjct: 445 PSNGTLIIAPASLIHQWEAEINRRLESD-LLSVFMFHGTKKQRQIEPKELARYDVVITTY 503
Query: 817 SIVSMEV 823
++ + E+
Sbjct: 504 TLAANEL 510
Score = 69 (29.3 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 182 VDASPSSITENFDERYGHYG-----ASIGNRLGSSVP----EGNLCTYVDVPYTDAEVSS 232
+D+S SS E+ ER+ AS+ + S P + +L + YT S
Sbjct: 11 IDSSDSSEDEDRKERHSSSSEVDETASMRSTDSSEPPRTIIDASLNSMASTVYTSTPNSK 70
Query: 233 HNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKD 292
+++ T S+ +GS S DD+Y + +I D F P + + L S+E K +
Sbjct: 71 QSISRTGSSTTYGSSKCSTDDHYRSRS-FI---DNSFEKPVTPITKKLQESDEPRAKQQL 126
Query: 293 EE 294
E
Sbjct: 127 RE 128
Score = 65 (27.9 bits), Expect = 3.9e-64, Sum P(6) = 3.9e-64
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1039 QNYVNILLMLLRLRQACDHPLLVK-GFD 1065
QN ILL+L+RLRQAC H + K G D
Sbjct: 732 QNMSCILLLLMRLRQACVHFHITKSGMD 759
Score = 52 (23.4 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 8 WLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGD 51
W G+ + ADD GL + ++L ++ +K R + GD
Sbjct: 385 WREGQPHSGGILADDMGLGKTL-SMLSLIVHQKAARRARKESGD 427
Score = 39 (18.8 bits), Expect = 2.0e-41, Sum P(5) = 2.0e-41
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 873 PDGLLLDIVAGPLAKVGW 890
PDGLL++++ A + W
Sbjct: 365 PDGLLVELMPHQKAGLRW 382
Score = 38 (18.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 12 EVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDV 66
+++ AD D++G +D + EE KQP P +S + E+V+++
Sbjct: 788 DLTIADSDNDEEG--VDTNK-----EEPKQPPTRIFEPDFISCKMAKTLEVVREI 835
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 319 (117.4 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 64/153 (41%), Positives = 100/153 (65%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
+K ++FSQ+ MLDL+E LK +I +L G MS+ +R+ + +FN ++ V+++SLK
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLK 1554
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A GLN+ A + ++D WWNP E QAI RAHRIGQT+ V +R ++NTVE++I+ L
Sbjct: 1555 AGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQL 1614
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
Q KK+ + S G+ +G +L+ +DL +LF
Sbjct: 1615 QNKKQLVFDSTIGD--SGNAMQKLSKEDLAFLF 1645
Score = 195 (73.7 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 933 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 985
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 986 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 1045
G + + INL P +I +++ + EE+DFY L + QF Y + TV NY +I
Sbjct: 1171 G---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIF 1227
Query: 1046 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGIC--N 1103
+L RLRQA DHP L+ F ++ L S + KK ++ + +CGIC N
Sbjct: 1228 DLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK-----NTTIIPAISNDY-VCGICLEN 1280
Query: 1104 DPPEDAVVSICGHVFCNQCI 1123
+ + + C H F C+
Sbjct: 1281 VQKRNNISTKCNHNFHKSCL 1300
Score = 181 (68.8 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 867 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 924
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 925 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 955
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 664 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 723 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 776
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 777 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 825
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 5.6e-59, Sum P(4) = 5.6e-59
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 698
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 699 SFRTEDDNKRQLETLNLDEED 719
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 511 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 568
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 569 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 600
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 48 (22.0 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1277 LEASLKDSSI-QYRRLDGTMSVFARDKAVKDF 1307
LE K S+ +++ DG +++ + D+ VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 46 (21.3 bits), Expect = 4.4e-48, Sum P(4) = 4.4e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCS 1253
P SND G L+N+ N I+ KC+
Sbjct: 1266 PAISNDYVCGICLENVQKRNN-ISTKCN 1292
Score = 44 (20.5 bits), Expect = 3.4e-51, Sum P(4) = 3.4e-51
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 408 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 464
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 465 ICDGSSSRSPIDGRHLSLNLN 485
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
Score = 40 (19.1 bits), Expect = 4.5e-22, Sum P(4) = 4.5e-22
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 602 GYPGVPLTGLGGMKSKASDERLI 624
GY G L+G+ +K++ D+ L+
Sbjct: 1144 GYRGEGLSGMSYLKNEVLDKILL 1166
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 319 (117.4 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 64/153 (41%), Positives = 100/153 (65%)
Query: 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1321
+K ++FSQ+ MLDL+E LK +I +L G MS+ +R+ + +FN ++ V+++SLK
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLK 1554
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381
A GLN+ A + ++D WWNP E QAI RAHRIGQT+ V +R ++NTVE++I+ L
Sbjct: 1555 AGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQL 1614
Query: 1382 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
Q KK+ + S G+ +G +L+ +DL +LF
Sbjct: 1615 QNKKQLVFDSTIGD--SGNAMQKLSKEDLAFLF 1645
Score = 195 (73.7 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 933 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 985
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 986 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 1045
G + + INL P +I +++ + EE+DFY L + QF Y + TV NY +I
Sbjct: 1171 G---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIF 1227
Query: 1046 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGIC--N 1103
+L RLRQA DHP L+ F ++ L S + KK ++ + +CGIC N
Sbjct: 1228 DLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK-----NTTIIPAISNDY-VCGICLEN 1280
Query: 1104 DPPEDAVVSICGHVFCNQCI 1123
+ + + C H F C+
Sbjct: 1281 VQKRNNISTKCNHNFHKSCL 1300
Score = 181 (68.8 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 867 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 924
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 925 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 955
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 1.5e-63, Sum P(4) = 1.5e-63
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 664 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 723 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 776
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 777 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 825
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 5.6e-59, Sum P(4) = 5.6e-59
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 698
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 699 SFRTEDDNKRQLETLNLDEED 719
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 511 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 568
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 569 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 600
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 48 (22.0 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1277 LEASLKDSSI-QYRRLDGTMSVFARDKAVKDF 1307
LE K S+ +++ DG +++ + D+ VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 46 (21.3 bits), Expect = 4.4e-48, Sum P(4) = 4.4e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCS 1253
P SND G L+N+ N I+ KC+
Sbjct: 1266 PAISNDYVCGICLENVQKRNN-ISTKCN 1292
Score = 44 (20.5 bits), Expect = 3.4e-51, Sum P(4) = 3.4e-51
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 408 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 464
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 465 ICDGSSSRSPIDGRHLSLNLN 485
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
Score = 40 (19.1 bits), Expect = 4.5e-22, Sum P(4) = 4.5e-22
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 602 GYPGVPLTGLGGMKSKASDERLI 624
GY G L+G+ +K++ D+ L+
Sbjct: 1144 GYRGEGLSGMSYLKNEVLDKILL 1166
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 288 (106.4 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 67/196 (34%), Positives = 113/196 (57%)
Query: 1226 PGDSNDLHGGDTLDNISD---ENEKIAAKCS-IDSIKL--GGEKAIVFSQWTKMLDLLEA 1279
P S L+G + D E+ KI++ + +++++ G +K+++ SQWT ML ++
Sbjct: 969 PSASVSLNGKSFKVELFDDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVAL 1028
Query: 1280 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339
LK Y +DG+++ R V+ FN+ VM++SL A +GLN+ H+ LLD
Sbjct: 1029 HLKRCGFTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLTGGNHLFLLD 1088
Query: 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDET 1398
+ WNP+ EDQA DR +R+GQ + V + + + TVE++IL LQ+KK+++ G +E
Sbjct: 1089 MHWNPSLEDQACDRIYRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQILSGSEEF 1148
Query: 1399 GGQQTRLTVDDLNYLF 1414
T+L++ DL LF
Sbjct: 1149 ---VTKLSLADLKVLF 1161
Score = 255 (94.8 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 55/151 (36%), Positives = 88/151 (58%)
Query: 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
+ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+YS +F
Sbjct: 724 SSPLLRVVWARLILDEAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKF 783
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPK 1000
LR PF +K + K + KG ++L + ++++LRRTK L G+P++ LP +
Sbjct: 784 LRCSPFDEFKLW----KSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHR 839
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
L + +++E YS L SR + Y
Sbjct: 840 KFQLHHLKLSEDEETVYSVLFARSRLALQYY 870
Score = 146 (56.5 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 762 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 821
GTL++CP S++ W E+ V S L V +YHG +R + L+ +D+VITTYS+++
Sbjct: 644 GTLIICPASLIHHWKNEVEKHV-SHNRLRVCLYHGPNRNQHAKVLSTYDIVITTYSLLAK 702
Query: 822 EVP 824
E+P
Sbjct: 703 EIP 705
Score = 138 (53.6 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S+A DE L +++ A A P G L + LL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESCPGETAMAEDPAG-LKISLLPHQKQALAWLLWRESQKPR--GGI 597
Query: 676 LADDQGLGKTISTIALILKERPPSFRTE 703
LADD GLGKT++ IALIL ++ + E
Sbjct: 598 LADDMGLGKTLTMIALILTQKKSKEKDE 625
Score = 59 (25.8 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 1033 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
A + V+IL LLRLRQ C H L+K + L+S +A L E Q+ L
Sbjct: 906 AGSQATSSAVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLALSL--EEQLSALTLS 962
Query: 1093 E 1093
E
Sbjct: 963 E 963
Score = 50 (22.7 bits), Expect = 6.5e-63, Sum P(6) = 6.5e-63
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH 542
KE++G+ + E+K++ + ++L+ P + Q S D +SH
Sbjct: 210 KEIEGMHKRNLLEMKSKQVRGNVLR-EPSAFQVKS-DSESH 248
Score = 40 (19.1 bits), Expect = 3.4e-52, Sum P(5) = 3.4e-52
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 7 AWLCGEVSAADE---FADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
AWL S ADD GL + + IL ++K ++ +++ +L LS+++
Sbjct: 583 AWLLWRESQKPRGGILADDMGLGKTLTMIALILTQKKSKEKDETT----ALTWLSKNDS- 637
Query: 64 QDVGSHSNL 72
+ SH L
Sbjct: 638 SEFTSHGTL 646
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 367 (134.2 bits), Expect = 7.5e-63, Sum P(5) = 7.5e-63
Identities = 74/186 (39%), Positives = 122/186 (65%)
Query: 1235 GDTLDNISDENEKIAAKCS--IDSIKLGGE----KAIVFSQWTKMLDLLEASLKDSSIQY 1288
G+ D++S + + ++K I + G+ K ++FSQWT L L+E L+++ IQ+
Sbjct: 785 GENTDDVSADPDNPSSKIEALIKILTAHGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQF 844
Query: 1289 RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1348
R+DG M+ ARD++++ F+T P+ +V++ SL S+GLN+VAA +L D WW P ED
Sbjct: 845 ARIDGKMTSIARDRSMRRFSTDPKCTVLLASLSVCSVGLNLVAANQAILADSWWAPAIED 904
Query: 1349 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT-V 1407
QA+DR +R+GQTR +V RL +++++EDR+LA+Q++KR+++ +AF E + R T V
Sbjct: 905 QAVDRVYRLGQTRETTVWRLVMEDSIEDRVLAIQEQKRKLMLAAFREKASKKVDDRATRV 964
Query: 1408 DDLNYL 1413
DL L
Sbjct: 965 ADLEKL 970
Score = 310 (114.2 bits), Expect = 7.5e-63, Sum P(5) = 7.5e-63
Identities = 91/307 (29%), Positives = 143/307 (46%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L V W RVVLDE +I+N R++ A LRA RW L+GTPI N + DLYS RFL
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVNTLKDLYSQIRFLGL 574
Query: 945 ----DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
+ FAV+ S +I+ +S +P LQA++ TI LRR K G + LP
Sbjct: 575 TGGLEDFAVFNSV--LIRPLMSDDP-DSRLLLQALMSTICLRRRKDM---GFVNLRLPTL 628
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ ++ F E++ Y + ++ ++ + Y ++L ++LRLRQ C+H L
Sbjct: 629 TSRVLRIKFHPHEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHLLEVILRLRQVCNHWAL 688
Query: 1061 VKG-FDSNSLLRSSVEMAKKLPQERQMY--LLNCLEASLAICGICNDPPEDAVVSICGHV 1117
K D + + + P + +L S IC IC D E V++ C H
Sbjct: 689 AKNRLDKLAAILDKHQTVPLTPDNIKALQDMLQIRIESQEICPICLDILETPVITACAHA 748
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 1177
F + CI E++ ++CP +I S V A L + + P+ ++ L+
Sbjct: 749 FDHDCI-EQVIVRQHKCPICRAEIENKSSLVAPAADLGENTDDVSADPDNPSSKIEA-LI 806
Query: 1178 EAPSCEG 1184
+ + G
Sbjct: 807 KILTAHG 813
Score = 107 (42.7 bits), Expect = 7.5e-63, Sum P(5) = 7.5e-63
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 754 QAKGRPAA-GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 812
Q K + ++ TL++ P ++ W +++ + + VL+YHG R +D L +DVV
Sbjct: 434 QPKTKESSKATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKED-ANLDHYDVV 492
Query: 813 ITTYSIVSME 822
+T+Y ++ E
Sbjct: 493 VTSYGTLATE 502
Score = 98 (39.6 bits), Expect = 1.5e-61, Sum P(6) = 1.5e-61
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 672 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQL 710
SGGILADD GLGKTI I+LIL P +T++ +K L
Sbjct: 409 SGGILADDMGLGKTIQIISLILSNSQP--KTKESSKATL 445
Score = 57 (25.1 bits), Expect = 7.5e-63, Sum P(5) = 7.5e-63
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCS 672
L+ LL +QR L+WM+ KE L S
Sbjct: 351 LSTTLLPYQRQGLAWMISKENPGLPTS 377
Score = 39 (18.8 bits), Expect = 1.8e-54, Sum P(4) = 1.8e-54
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 516 KTRSMASHLLKLSPESIQSN-SSDCKSHVDDE 546
KT+ + L +SP I SN + + H + E
Sbjct: 436 KTKESSKATLIISPVGIMSNWRNQIQEHTNPE 467
Score = 39 (18.8 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKL 527
+ E G+ D ++ KT + SHLL++
Sbjct: 649 QSEAKGMLLDFKSNNKTGTTYSHLLEV 675
Score = 38 (18.4 bits), Expect = 7.5e-63, Sum P(5) = 7.5e-63
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 487 SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 545
SR+ F Y + +K G + ++ TRS + L P+ ++S S+ H+ D
Sbjct: 10 SRKRFSYLNKVSGLRKRAPGWYILIRLQL-TRSPTKLEVPLQPKIMESRSTKRSIHLVD 67
Score = 38 (18.4 bits), Expect = 1.8e-62, Sum P(6) = 1.8e-62
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 495 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQS 534
Q ST N +E++ V E +K + + + SP S+ +
Sbjct: 316 QSSTFNPREINRVTESFG--LKESDLENMPMVESPSSLST 353
Score = 38 (18.4 bits), Expect = 1.8e-62, Sum P(6) = 1.8e-62
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 22 DQGLSIDMDTLLGILEEEKQPDRVKS-SPGDLSLRNLSQDELVQD 65
D L + L G++ P +K P DL R + +VQD
Sbjct: 203 DNRLLVVEGVLTGVIGAFDCPIVLKLYGPSDLERREALKQRMVQD 247
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 442 (160.7 bits), Expect = 7.6e-60, Sum P(2) = 7.6e-60
Identities = 109/331 (32%), Positives = 170/331 (51%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 9 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 68
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 69 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 128
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 1062
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 129 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN 188
Query: 1063 GFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAI-----CGICNDPPEDAVVSICGHV 1117
SN S+ + P+E + L+ ++ L+ C IC D V++ C HV
Sbjct: 189 AVSSNG--PSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHV 246
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 1177
FC CIC+ + N+ P C L + + +N L P +E+ D S+ K
Sbjct: 247 FCKPCICQVI---QNEQPHAKCP--LCRNDIHE----DNLLEC--PPEELARD-SEKK-- 292
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSLAKPRGN 1208
+ W +SSKI A + L L K N
Sbjct: 293 ----SDMEWTSSSKINALMHALTDLRKKNPN 319
Score = 215 (80.7 bits), Expect = 7.6e-60, Sum P(2) = 7.6e-60
Identities = 46/105 (43%), Positives = 67/105 (63%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1320
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 321 KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 380
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V +
Sbjct: 381 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVII 425
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 286 (105.7 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 68/166 (40%), Positives = 96/166 (57%)
Query: 1251 KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL 1310
K SI +K +KAIV SQWT +LD+L L + L+GT+ V R V +FN
Sbjct: 900 KTSI--LKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDR 957
Query: 1311 P-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1369
+ V+++SL A +GLN++ A H+LLLDL WNP E QA DR +R+GQ + V + +
Sbjct: 958 NNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFM 1017
Query: 1370 VKNTVEDRILALQQKKREMVASAFGEDETGGQ-QTRLTVDDLNYLF 1414
+TVE RI LQ KK ++ TG + ++LT+DDL LF
Sbjct: 1018 CVDTVEQRIKGLQDKKLDLADGVL----TGAKVSSKLTIDDLKGLF 1059
Score = 233 (87.1 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 52/144 (36%), Positives = 79/144 (54%)
Query: 888 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947
V W R++LDEA ++NH++Q + A LR K RW L+GTPIQN D+Y+ +FLR PF
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPF 654
Query: 948 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
++ K I G +L ++K++MLRRTK L + +LP K + L ++
Sbjct: 655 DDLHTW----KKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEI 710
Query: 1008 DFTDEERDFYSQLEINSRDQFKEY 1031
EE + Y + SR F ++
Sbjct: 711 SLDKEEMNVYQTVMTYSRTLFAQF 734
Score = 158 (60.7 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 754 QAKGRP---AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 810
++KGR GTLVVCP S+LRQW E+ +KV S+ L+V V+HG++R L +D
Sbjct: 515 KSKGRKDTRRGGTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRDYD 573
Query: 811 VVITTYSIVSME 822
+V+TTY IV+ E
Sbjct: 574 IVVTTYQIVARE 585
Score = 130 (50.8 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 601 PGYPGVP-LTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALS 659
P Y G + K+ + L V+++ + P A P G L V L+ HQ+ AL+
Sbjct: 390 PVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG-LKVSLMNHQKHALA 448
Query: 660 WMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693
WM +E GGILADD GLGKT++ I+ +L
Sbjct: 449 WMSWRERKLPR--GGILADDMGLGKTLTMISSVL 480
Score = 72 (30.4 bits), Expect = 5.0e-43, Sum P(5) = 5.0e-43
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 1005 KQVDF---TDEERDFYSQLEINSRDQFK---EYAA-AGTVKQ-NYVNILLMLLRLRQACD 1056
++ DF +D + Y+Q++ + +K ++A AG+ K+ +IL++LLRLRQ C
Sbjct: 741 RETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICC 800
Query: 1057 HPLLV 1061
HP L+
Sbjct: 801 HPGLI 805
Score = 50 (22.7 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 64 QDVGSHSNLQLQSEISGAESGGLGDSS-SQLEPTEQKCSPLQTCSASFSDWFNQNSGTCC 122
Q G+ N L S I A+S L DSS S + K +P++ S++ D T
Sbjct: 171 QFAGNIQN-DLHSTIGAADSEVLDDSSGSDVLILSNKETPIEILSSTDDD------ATTN 223
Query: 123 PESVGISQFETPGCSTASSFSEG 145
E++ FE P S + S G
Sbjct: 224 KENMSGPPFERPSKSLSPRSSAG 246
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(5) = 1.2e-58
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 16 ADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQ 75
++ ++D + S+ ++ LG K KSS S R S ++ + S
Sbjct: 6 SEYYSDKEEDSVVNNSSLG--RSRKSSRLSKSSRLSKSSRPSSAGVVIDETQSEEEESQS 63
Query: 76 SEISGAESGGLGDSSSQLEPTE 97
SE + +E D+S + +E
Sbjct: 64 SETAESEKSDESDNSQNSQESE 85
Score = 40 (19.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 63 VQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTE 97
++ + H L + + + G ES +GD SS + E
Sbjct: 795 LRQICCHPGL-IDAMLDGEESQTMGDHSSDSDTPE 828
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 322 (118.4 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 66/189 (34%), Positives = 109/189 (57%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
++ L V ++R+++DE +I+N T ++A L+ K +W L+GTPI N +DDLYS +
Sbjct: 666 ISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVK 725
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLP 998
FL DP+ + + + P SKN + + + A+L+ ++LRRTK DG+P++ LP
Sbjct: 726 FLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELP 785
Query: 999 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
PK +++K++ F+ + Y L + K A G + + Y IL+ +LRLRQ C HP
Sbjct: 786 PKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHP 845
Query: 1059 LLVKGFDSN 1067
L+ D N
Sbjct: 846 GLIGSQDEN 854
Score = 290 (107.1 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 60/161 (37%), Positives = 99/161 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASL-----KDSSIQYRRLDGTMSVFARDKAVKDF--NTLPEV 1313
GE+ ++FSQ++ LD+LE L KD + Y+ DG +S+ R + DF
Sbjct: 1012 GEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYK-FDGRLSLKERTSVLADFAVKDYSRQ 1070
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
++++SLKA +GLN+ A H ++D WW+P+ EDQAIDR HRIGQT V V+R ++++
Sbjct: 1071 KILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDS 1130
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+E+++L +Q+KKR + A DE ++ R ++++ LF
Sbjct: 1131 IEEKMLRIQEKKRT-IGEAMDTDEDERRKRR--IEEIQMLF 1168
Score = 83 (34.3 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 28/82 (34%), Positives = 38/82 (46%)
Query: 754 QAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD- 810
Q +P A TL+V P S+L QW+ E K + + VY+G + + L K
Sbjct: 577 QDNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYHEVYYGGNVSSLKTLLTKTKT 635
Query: 811 ---VVITTYSIVSMEVPKQPLG 829
VV+TTY IV E K G
Sbjct: 636 PPTVVLTTYGIVQNEWTKHSKG 657
Score = 79 (32.9 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 1099 CGICNDPPED---AVVSICGHVFCNQCICERLTADDNQ-----CPTRNCKIRLSLSSVFS 1150
C IC P D A+ + CGH FC +C+ E + +++ CP NC+ ++ + +
Sbjct: 914 CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCP--NCRNQIDACRLLA 971
Query: 1151 KATLNNS 1157
N++
Sbjct: 972 LVQTNSN 978
Score = 72 (30.4 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 628 AMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIS 687
A Q + Q + DG+ L +L+ + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHVNVE--DGIFFYANLHSGEFSLAKPILKTM----IKGGILSDEMGLGKTVA 541
Query: 688 TIALIL 693
+L+L
Sbjct: 542 AYSLVL 547
Score = 45 (20.9 bits), Expect = 2.9e-55, Sum P(6) = 2.9e-55
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 633 SQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 665
S P E S V + L +Q+ L+WM+++E
Sbjct: 422 SLPETEPSRD--VFKLELRNYQKQGLTWMLRRE 452
Score = 40 (19.1 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 93 LEPTEQKCSPLQTCSASFSDWFNQNSGT 120
+E E+ S + S + S +F+ NSGT
Sbjct: 95 MELNEKFGSQEEGLSLALSHYFDHNSGT 122
Score = 37 (18.1 bits), Expect = 1.0e-57, Sum P(6) = 1.0e-57
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 349 SLSNITLGDGKRSAQP 364
S+S+ T G+G RS P
Sbjct: 50 SVSDTTEGEGDRSIVP 65
Score = 37 (18.1 bits), Expect = 1.0e-57, Sum P(6) = 1.0e-57
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 541 SHVDDEPDICILEDISQPARSNQSLV 566
SH DD+ D+ + + ++S+V
Sbjct: 39 SHNDDDDDVVVSVSDTTEGEGDRSIV 64
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 280 (103.6 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 58/162 (35%), Positives = 93/162 (57%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE- 1312
+++I EK ++ SQWT +L+L+E +K S +Y + G + V R + V FN
Sbjct: 926 VENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGG 985
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
VM++SL A +GLN+ H++++DL WNP E QA DR +R+GQ + V + RL K
Sbjct: 986 ARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKG 1045
Query: 1373 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
T+E R++ LQ+ K + +S + T + +LT D+ LF
Sbjct: 1046 TIEQRVVMLQKDKVALASSVLDGNATR-KMNKLTTADIKMLF 1086
Score = 225 (84.3 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 51/135 (37%), Positives = 80/135 (59%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
LA++ W RV+LDEA +IKN ++ ++A L A RWCLSGTPI N + DLYS RFLR
Sbjct: 645 LAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRI 704
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVI 1002
PF+ K + I +P+ P+ ++ + K ++LRRTK + + ++ LPPK +
Sbjct: 705 RPFSDDKYWKESI-MPMK--PIMA-DRVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNV 760
Query: 1003 MLKQVDFTDEERDFY 1017
+ +++ +E Y
Sbjct: 761 EVHELELDGDEAQAY 775
Score = 137 (53.3 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 57/199 (28%), Positives = 86/199 (43%)
Query: 544 DDEPD-ICILEDISQPARSNQS--LVLGKTLSMNRSACSNHSV-ALGKPVVTSQHSSYSD 599
DDE D I ++ED +P+ + G ++ N H V L P D
Sbjct: 361 DDEDDEIFVIED-DEPSHRQVAPKFPSGSVMTQNGLLPKRHIVDPLKAPQPDFNAMLEKD 419
Query: 600 YPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAE--ASAPDGVLAVPLLRHQRIA 657
+T + + +R++ Q+A + P+ P G + L+ HQ+
Sbjct: 420 NKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPDETELTDTPKG-FKLELMPHQKAG 478
Query: 658 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNK-RQLETLNL 715
L+WM +ET GGILADD GLGKT+S I+LI ++ R ED N + E +
Sbjct: 479 LTWMRWRETQPQ--PGGILADDMGLGKTLSMISLIAHQKAARRARREDGNDDKDKEKRKV 536
Query: 716 DEEDNGIQVNGLDLVKQES 734
+E I NG +V S
Sbjct: 537 VKEQGLIPSNGTLIVAPAS 555
Score = 126 (49.4 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 759 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVVITTY 816
P+ GTL+V P S++ QW E+ ++ LS ++HG+ + +D LA++DVVITT+
Sbjct: 544 PSNGTLIVAPASLIHQWDAEIDRRLDDS-VLSTYMFHGTKKQRDIDARRLARYDVVITTF 602
Query: 817 SIVSMEV 823
++++ E+
Sbjct: 603 NLIANEL 609
Score = 64 (27.6 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1033 AAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNS 1068
AAG+ + +L++LLRLRQAC H + K G D ++
Sbjct: 827 AAGSNFEKMSCVLMLLLRLRQACVHFNITKTGVDMDA 863
Score = 53 (23.7 bits), Expect = 8.5e-49, Sum P(7) = 8.5e-49
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 693 LKERPPSFRT--EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 742
LK P F E DNK+ + DE+ IQ+ +V+Q ++ +P+
Sbjct: 405 LKAPQPDFNAMLEKDNKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPD 456
Score = 49 (22.3 bits), Expect = 8.5e-49, Sum P(7) = 8.5e-49
Identities = 29/138 (21%), Positives = 56/138 (40%)
Query: 508 KEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVL 567
++ E++ + S+ +K I + S SH + + ++SN S L
Sbjct: 35 RQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASHCTNS-----FATSTPKSKSNASTRL 89
Query: 568 GKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQV 627
G + +RS+ NH + S+ Y PLT + ++++D R Q+
Sbjct: 90 GSSYGSSRSSSQNHESH-------DRSRSFVQYD--ENKPLTPISKKLAESTDLRSKAQL 140
Query: 628 A---MQGISQPNAEASAP 642
++ + NAE S+P
Sbjct: 141 RERLLRKSLKQNAEDSSP 158
Score = 44 (20.5 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 44/200 (22%), Positives = 78/200 (39%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQT---CS 107
D S + DE + D S+ Q QS+ S + + D S + + +P T C+
Sbjct: 12 DTSSDDSQSDEKIDDFICRSSPQRQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASHCT 71
Query: 108 ASFSDWF---NQNSGTCCPESVGISQFETPGCST---ASSFSEGDGYHFLD--HRNTLDF 159
SF+ N+ T S G S+ + + + SF + D L + +
Sbjct: 72 NSFATSTPKSKSNASTRLGSSYGSSRSSSQNHESHDRSRSFVQYDENKPLTPISKKLAES 131
Query: 160 GVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCT 219
L +KA +R + + + D+SP+ G +G+S + V G T
Sbjct: 132 TDLRSKAQLRERLLRKSLKQNAEDSSPTRAASG-----GGWGSSADVKKSPEVSTGLFET 186
Query: 220 YVD-VPYTDAEVSSHNVAST 238
+ + +D S +N +ST
Sbjct: 187 ALSPIAKSDRRSSEYN-SST 205
Score = 40 (19.1 bits), Expect = 8.6e-57, Sum P(7) = 8.6e-57
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 1187 YNSSKIKAALEVLQSLAKPRGNTV 1210
Y S KIK LE+++++ + + V
Sbjct: 914 YLSCKIKNTLEIVENIMEKKEKVV 937
Score = 40 (19.1 bits), Expect = 2.2e-56, Sum P(7) = 2.2e-56
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 349 SLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVE 401
S SN + G + S +H S + F + + N L P +++S +
Sbjct: 81 SKSNASTRLGSSYGSSRSSSQNHESHDRSRSFVQYDENKPLTPISKKLAESTD 133
Score = 39 (18.8 bits), Expect = 2.8e-56, Sum P(7) = 2.8e-56
Identities = 34/154 (22%), Positives = 59/154 (38%)
Query: 389 LFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDS--GQSFIGLSPSLLS--QNQVVH 444
+F S S S E ID+ + R+S S +DS +S ++ +++ + H
Sbjct: 10 MFDTSSDDSQSDEKIDDFICRSSPQRQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASH 69
Query: 445 AKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKEL 504
+SK + SSRS H S + SR + Y + K L
Sbjct: 70 CTNSFATSTPKSKSNASTRLGSSYGSSRSSSQN-HESHDR--SRSFVQYDE-----NKPL 121
Query: 505 DGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 538
+ + + RS A +L +S++ N+ D
Sbjct: 122 TPISKKLAESTDLRSKAQLRERLLRKSLKQNAED 155
Score = 38 (18.4 bits), Expect = 3.5e-56, Sum P(7) = 3.5e-56
Identities = 16/69 (23%), Positives = 26/69 (37%)
Query: 409 RNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDG 468
+N HD SF D + +S L + + E L+ +S + Q D
Sbjct: 101 QNHESHDRSRSFVQYDENKPLTPISKKLAESTDLRSKAQLRERLLRKSLK----QNAEDS 156
Query: 469 SSSRSPIDG 477
S +R+ G
Sbjct: 157 SPTRAASGG 165
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 332 (121.9 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 77/247 (31%), Positives = 131/247 (53%)
Query: 883 GPLAKVG-----WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 937
G L KVG +FR++LDE +I+N T+ A++ + L++ R+W L+GTPI N +DDLYS
Sbjct: 576 GELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYS 635
Query: 938 YFRFLRYDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
+FL DP+ + + + + +P + + + ++++L+ I LRRTK +G+P++
Sbjct: 636 LTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVE 695
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
LP K ++++Q+ F D+E Y + + F E +G + + Y IL +LRLRQ C
Sbjct: 696 LPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCC 755
Query: 1057 HPLLVKG---FDSNSL-LRSSVEMAKKLP--QERQMYLLNCLEASLAICGICNDPPEDAV 1110
H L+ G D + +M K L +E Q+ N + + + E+
Sbjct: 756 HVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMYNLYGKIKEENE 815
Query: 1111 VSICGHV 1117
SIC V
Sbjct: 816 CSICTQV 822
Score = 282 (104.3 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 55/157 (35%), Positives = 103/157 (65%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYR--RLDGTMSVFARDKAVKDFNTLPE---VSVMI 1317
K IVFSQ++ LD++++ LK +S ++ + DG +++ R K ++ FN E V++++
Sbjct: 929 KVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILL 988
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+SLKA +GLN+ A ++D WW+P+ EDQAIDR HRIGQ V V+R ++N++E +
Sbjct: 989 LSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETK 1048
Query: 1378 ILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+L +Q++K+++ + E+E ++ + ++++ LF
Sbjct: 1049 MLKIQERKKQIGEAVAAEEE---ERRKRRIEEIQILF 1082
Score = 96 (38.9 bits), Expect = 5.1e-31, Sum P(5) = 5.1e-31
Identities = 41/153 (26%), Positives = 64/153 (41%)
Query: 1068 SLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCIC 1124
S+ + + A + +MY L C IC P + VV+ C H FC CI
Sbjct: 785 SIKENQIRFANDTDVKEKMYNLYGKIKEENECSICTQVPIPYSEMVVTPCAHTFCLSCIL 844
Query: 1125 ERLTAD-----DNQCPTRNCKIRLSLSSVF---SKATLNNSLSQRQPGQEIPTDYSDSKL 1176
E L + CP NC+ +S +F ++ T N + R Q+ DYS
Sbjct: 845 EHLDFQKELKKEKLCP--NCRSPISKYQLFRIRNQPTKGNEI--RFHTQKDAPDYSFQLY 900
Query: 1177 VEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNT 1209
+ P+ +SSKI+A + L++L N+
Sbjct: 901 LYDPN-----RSSSKIQALVRHLKALHSQSPNS 928
Score = 82 (33.9 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 667 SSLHCSGGILADDQGLGKTISTIALI 692
SSL GGILAD+ GLGKTI+T+AL+
Sbjct: 454 SSLR--GGILADEMGLGKTIATLALV 477
Score = 70 (29.7 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 27/81 (33%), Positives = 32/81 (39%)
Query: 750 NFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 807
NF E RP A TL+V P S+L QW E + + L Y T L
Sbjct: 484 NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLC 543
Query: 808 KFD------VVITTYSIVSME 822
D V+ITTY V E
Sbjct: 544 NPDNSKIPIVMITTYGTVLNE 564
Score = 49 (22.3 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 590 VTSQHSSYSDYPGYPGVPLTGLGGMKS-KASDERLILQVAMQGISQPNAEASAPDGVLAV 648
++SQ + D +P VP L MK S+ +L + ++G+ + + P A+
Sbjct: 311 ISSQEINSGDVE-HP-VPEINLDQMKEFYQSNNQLKI---LEGLPETT---TPPKENFAL 362
Query: 649 PLLRHQRIALSWMVQKE 665
L +Q+ LSWM+ +E
Sbjct: 363 DLRSYQKHGLSWMLARE 379
Score = 48 (22.0 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 1004 LKQVDFTDEERDFYSQLEINSRD 1026
LK D T++E D SQ EINS D
Sbjct: 299 LKVNDDTEDEEDISSQ-EINSGD 320
Score = 46 (21.3 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD-DEPDICILEDISQPA 559
+KEL KE + ++ L ++ + + N + + H D PD + P
Sbjct: 850 QKELK--KEKLCPNCRSPISKYQLFRIRNQPTKGN--EIRFHTQKDAPDYSFQLYLYDPN 905
Query: 560 RSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSD 599
RS+ + + L + A + S K +V SQ SSY D
Sbjct: 906 RSSSKI---QALVRHLKALHSQSPN-SKVIVFSQFSSYLD 941
Score = 43 (20.2 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 214 EGNLCTYVDVPYTDAEVS 231
E ++CT V +PY++ V+
Sbjct: 815 ECSICTQVPIPYSEMVVT 832
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 302 (111.4 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 62/152 (40%), Positives = 93/152 (61%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
K+I+FSQ+T ML L+E L+ + I LDG+M+ R ++ F +V ++SLKA
Sbjct: 834 KSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVECFLVSLKA 893
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+ LN+ A V ++D WWNP E Q+ DR HRIGQTRPV + RL +++++E RI+ LQ
Sbjct: 894 GGVALNLTEASRVFIVDPWWNPAAEWQSADRVHRIGQTRPVVITRLCIEDSIESRIVELQ 953
Query: 1383 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+KK +M+ S D+ L +DL +LF
Sbjct: 954 EKKTKMINSTVNSDDVALDS--LEPEDLQFLF 983
Score = 230 (86.0 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 81/300 (27%), Positives = 138/300 (46%)
Query: 867 SKQKKG---PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 923
+KQ+KG DG+ + L + + RV+LDEA IK+ T ++AC L+ RWCL
Sbjct: 495 AKQEKGVSKKDGIYKE--KSLLHSIDFHRVILDEAHYIKSRTTMTSKACLALKTTYRWCL 552
Query: 924 SGTPIQNAIDDLYSYFRFLRYDPFAVY---KSFCSMIKVPIS-KNPVK--GYKKLQ--AV 975
+GTP+QN I + +S RFL+ +PFA Y CS + ++ K K G+ L+ +V
Sbjct: 553 TGTPLQNRIGEFFSLVRFLKIEPFANYLCRDCDCSALDWCLNDKYQCKKCGHGGLRHVSV 612
Query: 976 LKTIMLR--RTKGTLLDGEPI---INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1030
+L +T G L G + L IML++ +++D +E+ ++ +
Sbjct: 613 FNQELLNPIQTYGRTLKGAEAFRKLRLLTSKIMLRR-----QKKDHMDSMELPLKEIIID 667
Query: 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR--SSVEMAKKLPQERQMYL 1088
G V+++ ++ Q + +G N+ + +++ + L
Sbjct: 668 RQFFGEVEKDLAG---SIMHNNQRKFDTYVAQGVVLNNYANIFGLLSQMRQVADHPDLIL 724
Query: 1089 LNCLE--ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ-CPTRNCKIRLSL 1145
E ++ +C IC+D EDA+ S C H FC C + + CP C I LS+
Sbjct: 725 KKNNEPGVNIMVCCICDDTAEDAIKSQCKHEFCRACASSYVNSTPQPTCP--RCHIVLSI 782
Score = 104 (41.7 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKD--PCELAKFDVVITTYSIV 819
+LV+ P L QW E+++ ++G+L +VYHGS+ +TK EL +DV+I +Y+ +
Sbjct: 433 SLVLAPPVALMQWMSEIQSY--TEGTLKTIVYHGSNAKTKKMTKAELKGYDVIIMSYNSL 490
Query: 820 SMEVPKQPLG 829
KQ G
Sbjct: 491 QSMYAKQEKG 500
Score = 87 (35.7 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERP 697
AS P + + L Q L+WM K GG+L D+ GLGKTI ++L++ + P
Sbjct: 373 ASQPTNI-SRNLKPFQLQGLAWM--KAMEQTEWKGGLLGDEMGLGKTIQAVSLVMSDWP 428
Score = 61 (26.5 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 57/244 (23%), Positives = 95/244 (38%)
Query: 347 GNSLS-NITL---GDGKRSAQPCTYSHSHSSRTK-QMVFAKDEGNDDLFPCWSTVSDSVE 401
G+ L NI L D K+ + YS + +S+ K V DE D P + ++ ++
Sbjct: 92 GSRLEINIPLQPPADSKKVLRKSVYSLNGASKRKWNEVDDSDEELSDSSPD-AVLARRLQ 150
Query: 402 PIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI-------L 454
+E SS ++ SG S S L Q VVH + +D++
Sbjct: 151 KAEETDFTGSS-----SAKQAMYSGTSSTRRSTRSLKQRPVVHDLDSEDDVLTASIKSKF 205
Query: 455 ESKR----ARFCQEICDGSSSRSPIDGRHL----SLNLNGSRQYFPYAQPSTLNKKELDG 506
+SKR A+F + DGS+ S D ++ +NGS F +T +K+
Sbjct: 206 KSKRQATPAKFVADSEDGSAFSSAPDANDSDQADNIAVNGSSDEFDDEVQTTKPRKQAHR 265
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLV 566
V I R L +S +S+ D + D + + S+ R+ +
Sbjct: 266 VDRRASQPIPKRRKIVPRATLVLDSESESSAPPSEWTDSDDDEGLGDAPSETPRAVTRVR 325
Query: 567 LGKT 570
G+T
Sbjct: 326 RGRT 329
Score = 44 (20.5 bits), Expect = 1.1e-50, Sum P(5) = 1.1e-50
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 16 ADEFADDQGLSIDMDTLLGILEEEKQPDRVK---SSPGDLSLRNLSQDELVQDVGSHSNL 72
AD A + G S + D + + KQ RV S P + + + LV D S S+
Sbjct: 238 ADNIAVN-GSSDEFDDEVQTTKPRKQAHRVDRRASQPIPKRRKIVPRATLVLDSESESSA 296
Query: 73 QLQSEISGAESGGLGDSSSQ 92
+ GLGD+ S+
Sbjct: 297 PPSEWTDSDDDEGLGDAPSE 316
Score = 41 (19.5 bits), Expect = 5.4e-46, Sum P(4) = 5.4e-46
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 661 MVQKETSSLHCSGGILADD 679
M ++ SSL +G +LADD
Sbjct: 1 MTRRTRSSLARAGKVLADD 19
Score = 40 (19.1 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 369 HSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYH 414
H +++TK+M A+ +G D + ++++ ++ V + +
Sbjct: 463 HGSNAKTKKMTKAELKGYDVIIMSYNSLQSMYAKQEKGVSKKDGIY 508
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 351 (128.6 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 75/194 (38%), Positives = 116/194 (59%)
Query: 870 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 929
KK + +L ++ PL + W R+++DEA IKN + + A W LR +R WCL+GTPIQ
Sbjct: 861 KKKTNTMLYNMKEYPLYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERNWCLTGTPIQ 920
Query: 930 NAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTL 988
N+I D++ FRFL P+ + + I ++KN + ++ + I+LRRTK +
Sbjct: 921 NSIFDIFPLFRFLGIKPYGTIEWWNKEIVDYVNKNKLNLALDVVRKISSPILLRRTKKSK 980
Query: 989 L-DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLM 1047
+G II+LP K I L++++F+ EE DFY + S+ +F Y G V +Y ++L +
Sbjct: 981 TKNGNSIISLPKKNIHLEKLEFSLEEEDFYRAIFYRSKTKFDTYMHDGNVLSHYSHVLQL 1040
Query: 1048 LLRLRQACDHPLLV 1061
LLRLRQ C HPLL+
Sbjct: 1041 LLRLRQCCSHPLLL 1054
Score = 202 (76.2 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374
V++ SLKA +GLN+ + V L+DLWWNP EDQA +R HRIGQ + V++ + ++ TV
Sbjct: 1334 VLLCSLKAGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKTV 1393
Query: 1375 EDRILALQQKKR 1386
E+RIL + Q K+
Sbjct: 1394 EERILQIHQSKQ 1405
Score = 120 (47.3 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 716 DEEDNGIQVNGLDLVKQESDYCRVVP---NGSSAKSFNF-VEQA-KGR--PAAGTLVVCP 768
DE G + + L+ + + ++ N + K+F + +E KG GTLV+ P
Sbjct: 685 DEMGLGKTIQSIGLITHDIYHNKLYSKNNNLENKKNFTYLIENTIKGVHFKRGGTLVIAP 744
Query: 769 TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 822
+++ QW EE+ T +G ++ +Y+G+S+ EL+ + VV+TTYS + E
Sbjct: 745 LALIYQWKEEIERH-TKEGFVTCYIYYGTSKDISSEELSGYSVVLTTYSTLVSE 797
Score = 75 (31.5 bits), Expect = 1.2e-47, Sum P(6) = 1.2e-47
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 673 GGILADDQGLGKTISTIALI 692
GGILAD+ GLGKTI +I LI
Sbjct: 680 GGILADEMGLGKTIQSIGLI 699
Score = 65 (27.9 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1099 CGICNDPPEDAVVSICGHVFCNQCICE--RLTA-DDNQCPTRNCKIRLSLSSV 1148
C IC + ++S C H+ C +C + LT D +CP C +SL S+
Sbjct: 1166 CCICLEDATYPLISKCLHIMCKKCADDYFHLTQIADKKCP--QCDNYISLKSL 1216
Score = 60 (26.2 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1265 IVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN 1308
+VFSQW L ++E L +I + DG+++ R + FN
Sbjct: 1262 VVFSQWIGFLKIIEKLLNLYNIANKIYDGSLTFEQRKATLNWFN 1305
Score = 42 (19.8 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1165 QEI-PTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGN 1208
+EI P +Y +++ EGVW+ ++ E + L + + N
Sbjct: 448 EEIYPNEYYFKPMLKTYQAEGVWWMYTRENPP-EYTKKLERQKSN 491
Score = 37 (18.1 bits), Expect = 3.3e-52, Sum P(6) = 3.3e-52
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 437 LSQNQVVHAKEEHEDLILESKRAR 460
LS+N++ EE +L+ ++ R
Sbjct: 416 LSENEIEEKNEEATNLVFVEEKFR 439
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 286 (105.7 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 58/139 (41%), Positives = 95/139 (68%)
Query: 1255 DSIKLG-GE---KAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNT 1309
+S KL GE K++VFS WT LDL+E +L+D + Y RLDGTMS+ AR+KA+ +F
Sbjct: 1004 ESAKLPEGEAPIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRD 1063
Query: 1310 LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1369
++++ ++ A +GLN+ AA HV +++ +NP QAIDR HR+GQTR V+ ++
Sbjct: 1064 DNNTTILLATIGAGGVGLNLTAASHVYIMEPQYNPAAVAQAIDRVHRLGQTREVTTVQFI 1123
Query: 1370 VKNTVEDRILALQQKKREM 1388
+K+++E++I L +KK+++
Sbjct: 1124 MKDSIEEKIAELAKKKQQL 1142
Score = 188 (71.2 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
+ PL K+ FR+VLDEA +I+ +A + L A+RRW ++GTPIQN +DDL S +F
Sbjct: 655 SSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPIQNRLDDLLSVTKF 714
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
L P+ F I L+ ++ + LRR K I+LP +
Sbjct: 715 LGIYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDSFTLRRVKDK-------IDLPARH 767
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN---YVNILLMLLRLRQACDHP 1058
+ ++F++ E + S + A K Y +IL ++ LRQ H
Sbjct: 768 DKIVMLEFSESEAQLHEFFRKESNVMMRVIAGEDKSKMKGRMYHHILKAMMILRQISAHG 827
Query: 1059 LLVKGFDSNSLLRS-SVEMAKKLPQ---------ERQMYLLNCL--EASLAICGICNDPP 1106
+ D + ++ SV A L + +++ Y + L E+S +C IC+
Sbjct: 828 KELLDSDERARIKGLSVHDAIDLEEGPSADAVATDKKAYEMFTLMQESSADMCAICSKRL 887
Query: 1107 ED 1108
E+
Sbjct: 888 EE 889
Score = 182 (69.1 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 74/269 (27%), Positives = 110/269 (40%)
Query: 567 LGKTLSMNRS-ACSNHSVALGKPVVTSQHSSYSDYPGY-PGVPLTGLGGMKSKASDERLI 624
+G L N + SV G PV P Y P G+ + +
Sbjct: 385 VGNYLGQNNVWLATPFSVEQGVPVFNPHAERRRLQPSYAPTGSQRNRSGVNYEVRSAEEV 444
Query: 625 LQVAMQGISQ----PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 680
M+ Q N P V+ PLLRHQ+ AL +M +KE G D+
Sbjct: 445 TDAVMKMFDQLQSADNLPEMDPPAVVTTPLLRHQKQALWFMTEKEAPRKF--GPKEEDNN 502
Query: 681 GLGKTISTIALILKERP--PSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV----KQES 734
L + + K R + + + L L D G ++ L LV Q
Sbjct: 503 SLWREEYSANGTKKYREVISGIVLDQEPPQSLGGLLADMMGLGKTLSILSLVISSLAQAQ 562
Query: 735 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 794
++ R++P KS + K TL+V P S + W +++ + G+L+ V+
Sbjct: 563 EWARMIPQPGLVKSRPGIRNTKT-----TLLVAPLSTVNNWVSQVKEHLRD-GALTSYVF 616
Query: 795 HGSSRTKDPCELAKFDVVITTYSIVSMEV 823
HGSSRT EL+K+D+VITTYSIV E+
Sbjct: 617 HGSSRTTSVDELSKYDLVITTYSIVLSEL 645
Score = 48 (22.0 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 464 EICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASH 523
++C+G S S + ++ G + Y +K+ + E KT+++ SH
Sbjct: 943 DVCEGWISAS-----YSAITAAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTKALLSH 997
Query: 524 LLKLSPES 531
LL + ES
Sbjct: 998 LLATAEES 1005
Score = 40 (19.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 41 QPDRVKSSPGDLSLRNLSQDELVQDVGSHSN 71
QP VKS PG +RN LV + + +N
Sbjct: 570 QPGLVKSRPG---IRNTKTTLLVAPLSTVNN 597
Score = 37 (18.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVL 976
F+ + S +I++ + + GY +L +
Sbjct: 1020 FSAWTSHLDLIEIALRDQGLTGYTRLDGTM 1049
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 300 (110.7 bits), Expect = 3.2e-48, Sum P(4) = 3.2e-48
Identities = 67/176 (38%), Positives = 94/176 (53%)
Query: 888 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947
V W RVVLDEA +IKNH ++ ++AC LR+K RW LSGTPI N I++LY Y RFLR +
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLRVEWA 724
Query: 948 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK-VIMLKQ 1006
A K F N + +L AV+ ++M+RR G+PI+ +PP +
Sbjct: 725 ADMKDFKKKFGGTPGDNDSEN-SRLAAVVPSLMIRRRVHDTFMGQPILRIPPTHPVKTIS 783
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
V+ + EE+ Y +LE RD + G + L RLRQ HP L++
Sbjct: 784 VELSTEEKLIYHRLEDRFRDNLNSHIKEGVSSKKLRTYFTYLTRLRQCTSHPFLLE 839
Score = 227 (85.0 bits), Expect = 3.2e-48, Sum P(4) = 3.2e-48
Identities = 81/328 (24%), Positives = 147/328 (44%)
Query: 1098 ICGICNDPPEDA-VVSICGHVFCNQCICERLTAD---DNQCPTRNCKIRLSLSSVFSKAT 1153
IC C + P+D+ + CGH FC CI E + + NQ P C ++ + +
Sbjct: 928 ICRSCTELPQDSQITEPCGHTFCRDCI-EPIVHNAEASNQEP--KCPHCSTVVKTYKRMP 984
Query: 1154 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSL--AKPRGNTVT 1211
+ ++R ++ D ++ +L + G ++ K + L +P+ + V
Sbjct: 985 KPGNRNKRYD-EDTDED-AEEELDDLGRALGNRRKKARAKKGPQPGDDLLGVQPKSSDVA 1042
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDN-ISDENEKIAAKCSI-DSI-KLGGEKAIVFS 1268
IC D T D ++ + A K + + + K +K I+F+
Sbjct: 1043 KFL-------EIC---DR-------TPDKPVTPSAKTTAIKMQVLEWLHKYPDDKIIIFT 1085
Query: 1269 QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL--PEV-SVMIMSLKAASL 1325
W + +L + I++ G+M + R AV+ F T+ P ++I S +
Sbjct: 1086 HWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIASSRCGGQ 1145
Query: 1326 GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1385
LN+ AA V+L+DLWWN E QA R HRIGQT+ +++ + T+++R+L +Q +K
Sbjct: 1146 ALNLTAANRVILVDLWWNTAVERQAFGRVHRIGQTKDTYYVKIVTRKTIDERLLDMQDEK 1205
Query: 1386 REMVASAFGEDETGGQQTRLTVDDLNYL 1413
+++ + E + LT D+ YL
Sbjct: 1206 DAKISNTLQDGEH--KVKPLTHADIRYL 1231
Score = 104 (41.7 bits), Expect = 3.2e-48, Sum P(4) = 3.2e-48
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
+ PL HQ + + +M+ KE S L GGILAD GLGKT+ +A + + +
Sbjct: 519 MKTPLFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLACMAQNQ 569
Score = 77 (32.2 bits), Expect = 3.2e-48, Sum P(4) = 3.2e-48
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 755 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVV 812
A+ + TL+V P + + QW EL+ T + ++H S + ++ P L K VV
Sbjct: 566 AQNQGEGPTLIVAPAAAIEQWKSELKKHCT----FAKRIWHYSDKNENQIPEVLKKEKVV 621
Query: 813 ITTYSIVSMEVP 824
I +Y ++ P
Sbjct: 622 IASYQAIAKAFP 633
Score = 46 (21.3 bits), Expect = 3.2e-42, Sum P(4) = 3.2e-42
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 635 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ-----GLGKTISTI 689
P+AE ++P V+ L++ + L +K+ +GG L+ ++ + IS
Sbjct: 202 PDAERASPAAVVRHNLVKMRNKYLRLTAKKDNLKAKEAGGPLSQEEIKLLEQIESEISEK 261
Query: 690 ALILKERPPSFRTEDDNKRQLETLNLDEEDNG-IQVNGLDLVKQESD 735
IL + DD+ + + D+ NG ++ DL +E+D
Sbjct: 262 EKILNDNQGDDDFSDDDDDDFDGSD-DDAPNGHVEEIENDLDGEEND 307
Score = 40 (19.1 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQ--QKKREMVASAFGEDE-TGGQQTRLTVDDL 1410
A R GQ RP+ T K R+ + + + KR EDE GG Q ++ + L
Sbjct: 1282 AVRQGQKRPLGPGADTRKGIKRRRVPSKRRPESKRRATDEDDDEDEGPGGSQEQVLDESL 1341
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 249 (92.7 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 71/231 (30%), Positives = 113/231 (48%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 941 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
FL DP+ V + ++ P + K + L +++ IM R K ++D I +PP+
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAKKDVIDQ---IQIPPQ 917
Query: 1001 VIMLKQVDFTDEERDFYS-QLEINSRDQFKEYAAAG--TVK------QNYVNILLMLLRL 1051
+ + F+ ER FY Q E+ +D + T+K + +IL LLRL
Sbjct: 918 TENIHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRL 977
Query: 1052 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
RQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 978 RQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCAL 1027
Score = 226 (84.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 54/155 (34%), Positives = 93/155 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K++VFS W +LD++ +L D+++ + +++G +S F + + ++ P+++++++ L
Sbjct: 1527 GAKSLVFSTWQDVLDIIAKALYDNNMTFSQING-ISKFQENLSAFKYD--PKINILLLPL 1583
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GLN++ A HVLL++ NP E QAI R HRIGQT+ V R +K T+E+R+
Sbjct: 1584 HTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQT 1643
Query: 1381 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
L+ R +S+ + E + LTV DL LF
Sbjct: 1644 MLKTVDRSHTSSSMKQSEA----SVLTVADLADLF 1674
Score = 118 (46.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 821 MEV 823
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 714
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 371 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 412
Score = 75 (31.5 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 25/85 (29%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + TR I+ ++ S ++
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNECIA--IIIEQYSVGTRRSSIKCAICRQTTSHKEISY 1488
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ QE IP S S VEA
Sbjct: 1489 VFTAETANQEDDIPVKGSHSTKVEA 1513
Score = 57 (25.1 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 500 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCK---SHVDDEPDICI-LEDI 555
N KE + E KT S +LS + Q+N S S +E D C +++
Sbjct: 515 NYKEQKRRERTKEQAAKT-SERIQKKQLSDANTQTNESKIPLRTSIATEEHDYCATIKND 573
Query: 556 SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 600
+ N++ + + ++ ++A S GKP+++ SS+SD+
Sbjct: 574 RKSETDNENSM--EENNIQKAAVSKSPDLHGKPLISGDISSHSDF 616
Score = 54 (24.1 bits), Expect = 3.9e-44, Sum P(5) = 3.9e-44
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 702 TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFN 750
+E K+QL N ++ I + + +E DYC + N +++ N
Sbjct: 533 SERIQKKQLSDANTQTNESKIPLR-TSIATEEHDYCATIKNDRKSETDN 580
Score = 47 (21.6 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 260 CYINTGDTIFGDPSSFNFQHLLSSEETATKP--KDEEGEFTTEIACSSSGLVLNAQGGPG 317
C D +F + S F H + + + +DEEG + +S GL ++
Sbjct: 1240 CVFCKADELFTEYESKLFSHTVKGQMAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERA 1299
Query: 318 KGSMLKVPAIDYLDAKRQCEDS 339
++L LD K E S
Sbjct: 1300 LKAILSFAKAHRLDVKLTEEGS 1321
Score = 38 (18.4 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDG 991
FA++K ++ + I +N + L+ ++ ++ + KG L G
Sbjct: 464 FAIFKYISAVYRYDIQRNRRLLKRTLEKLIAEQVVEQVKGHGLAG 508
Score = 37 (18.1 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
Score = 37 (18.1 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWF 114
QL+ + + ++ L+P Q LQ S S W+
Sbjct: 1100 QLRQHYMSKSNAEVAEAHQALQPVLQTIRELQRKIHSSSPWW 1141
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 249 (92.7 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 71/231 (30%), Positives = 113/231 (48%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 941 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
FL DP+ V + ++ P + K + L +++ IM R K ++D I +PP+
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAKKDVIDQ---IQIPPQ 917
Query: 1001 VIMLKQVDFTDEERDFYS-QLEINSRDQFKEYAAAG--TVK------QNYVNILLMLLRL 1051
+ + F+ ER FY Q E+ +D + T+K + +IL LLRL
Sbjct: 918 TENIHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRL 977
Query: 1052 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
RQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 978 RQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCAL 1027
Score = 226 (84.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 54/155 (34%), Positives = 93/155 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K++VFS W +LD++ +L D+++ + +++G +S F + + ++ P+++++++ L
Sbjct: 1527 GAKSLVFSTWQDVLDIIAKALYDNNMTFSQING-ISKFQENLSAFKYD--PKINILLLPL 1583
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GLN++ A HVLL++ NP E QAI R HRIGQT+ V R +K T+E+R+
Sbjct: 1584 HTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQT 1643
Query: 1381 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
L+ R +S+ + E + LTV DL LF
Sbjct: 1644 MLKTVDRSHTSSSMKQSEA----SVLTVADLADLF 1674
Score = 118 (46.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 821 MEV 823
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 714
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 366 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 407
Score = 75 (31.5 bits), Expect = 3.3e-47, Sum P(5) = 3.3e-47
Identities = 25/85 (29%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + TR I+ ++ S ++
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNECIA--IIIEQYSVGTRRSSIKCAICRQTTSHKEISY 1488
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ QE IP S S VEA
Sbjct: 1489 VFTAETANQEDDIPVKGSHSTKVEA 1513
Score = 47 (21.6 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 260 CYINTGDTIFGDPSSFNFQHLLSSEETATKP--KDEEGEFTTEIACSSSGLVLNAQGGPG 317
C D +F + S F H + + + +DEEG + +S GL ++
Sbjct: 1240 CVFCKADELFTEYESKLFSHTVKGQMAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERA 1299
Query: 318 KGSMLKVPAIDYLDAKRQCEDS 339
++L LD K E S
Sbjct: 1300 LKAILSFAKAHRLDVKLTEEGS 1321
Score = 43 (20.2 bits), Expect = 5.2e-43, Sum P(5) = 5.2e-43
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 702 TEDDNKRQLETLNLD-EEDNGIQVNGLDLVK---------QESDYCRVVPNGSSAKSFN 750
+E K+QL N E V D++K +E DYC + N +++ N
Sbjct: 528 SERIQKKQLSDANTQTNESKDSDVTSTDVLKIPLRTSIATEEHDYCATIKNDRKSETDN 586
Score = 38 (18.4 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDG 991
FA++K ++ + I +N + L+ ++ ++ + KG L G
Sbjct: 459 FAIFKYISAVYRYDIQRNRRLLKRTLEKLIAEQVVEQVKGHGLAG 503
Score = 37 (18.1 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
Score = 37 (18.1 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWF 114
QL+ + + ++ L+P Q LQ S S W+
Sbjct: 1100 QLRQHYMSKSNAEVAEAHQALQPVLQTIRELQRKIHSSSPWW 1141
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 242 (90.2 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 70/232 (30%), Positives = 115/232 (49%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 802 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVV 861
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + IM R K ++D I +PP
Sbjct: 862 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAKKDVIDQ---IQIPP 914
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 915 QTEEMHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVSSILYPLLR 974
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 975 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1025
Score = 231 (86.4 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 53/158 (33%), Positives = 92/158 (58%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G KA+VFS W +LD++ +L D+++ + ++ + F + + ++ P+++++
Sbjct: 1542 LKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQIS-RIKTFQENLSAFKYD--PQINIL 1598
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
++ L S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+
Sbjct: 1599 LLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEE 1658
Query: 1377 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
R+ A+ + S+ G+ + + LTV DL LF
Sbjct: 1659 RMQAMLKTAERSHTSSSGKHS---EASALTVADLADLF 1693
Score = 111 (44.1 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 716 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 774
Query: 821 MEV 823
E+
Sbjct: 775 SEL 777
Score = 79 (32.9 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 361 GGILADEMGLGKTVEVLALIL 381
Score = 67 (28.6 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQC---ICERLTADDNQCPTRNCKIRLSLSSVFSKATL 1154
C IC + V CGH FCN+C I E+ + ++ + C I +S + +
Sbjct: 1450 CPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIK-CAICRQTTSHKEVSYV 1508
Query: 1155 NNSLSQRQPGQEIPTDYSDSKLVEA 1179
S Q +IP S S VEA
Sbjct: 1509 FTSEKANQE-DDIPVKGSHSTKVEA 1532
Score = 54 (24.1 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 648 VPLLR-HQRIALSWMVQKE 665
+P+LR +QR A++WM+Q+E
Sbjct: 295 IPVLRPYQREAVNWMLQQE 313
Score = 41 (19.5 bits), Expect = 5.2e-41, Sum P(5) = 5.2e-41
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 687 STIALILKERPPSFRTEDDNKRQLET---LNLDEEDNGIQV 724
S+ +I+ + PP D KR E+ LN E++ + V
Sbjct: 48 SSDCIIIDDDPPEGAAHRDKKRCTESVSILNSTEKETPLSV 88
Score = 41 (19.5 bits), Expect = 1.7e-40, Sum P(6) = 1.7e-40
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 547
KK+ G + +E E++ + P I + +D DD+P
Sbjct: 516 KKQAVGSPQKIEKELRKSVNKDTDSEYMPSDIYDDDNDNDDDDDDDP 562
Score = 40 (19.1 bits), Expect = 2.0e-45, Sum P(7) = 2.0e-45
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 10 CGE-VSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGS 68
C E VS + + LS+ ++ + D K+ GD L+ L ++ LV+
Sbjct: 70 CTESVSILNSTEKETPLSVALNVTIS---PHPSDDSWKAFLGDFVLQLLPEESLVEHFSE 126
Query: 69 HSNLQLQSEIS 79
+ + SE S
Sbjct: 127 RTFTLMSSESS 137
Score = 39 (18.8 bits), Expect = 2.6e-45, Sum P(7) = 2.6e-45
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 494 AQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 547
A P ++++ ++ +M +++ ++ L + ++SSDC +DD+P
Sbjct: 8 APPMKVDEERQQQLRWNMHEDLRNEPLS--LTEEERACWDADSSDCII-IDDDP 58
Score = 37 (18.1 bits), Expect = 2.2e-33, Sum P(5) = 2.2e-33
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 779 YVDIPHSNSE 788
Score = 37 (18.1 bits), Expect = 1.7e-23, Sum P(6) = 1.7e-23
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLL 1277
IKL +KA+ SQ K L L
Sbjct: 1408 IKLVNDKAVATSQLQKKLGQL 1428
Score = 37 (18.1 bits), Expect = 1.7e-13, Sum P(4) = 1.7e-13
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 LGDSSSQLEPTEQKCSPLQTCSASFSDWF 114
+ ++ L+P +Q LQ S S W+
Sbjct: 1132 VAEAQQALQPVQQSIRELQRKVHSGSPWW 1160
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 242 (90.2 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 69/232 (29%), Positives = 115/232 (49%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 806 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 865
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 866 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 918
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 919 QTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 978
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 979 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1029
Score = 224 (83.9 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 53/155 (34%), Positives = 91/155 (58%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1530 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKHDPQINILLLPL 1586
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1587 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1646
Query: 1381 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
L+ ++ +S+ E + LT+ DL LF
Sbjct: 1647 MLKTAEKSHTSSSVKHPEA----SVLTLADLADLF 1677
Score = 111 (44.1 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 720 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 778
Query: 821 MEV 823
E+
Sbjct: 779 SEL 781
Score = 79 (32.9 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 370 GGILADEMGLGKTVEVLALIL 390
Score = 68 (29.0 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1434 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1491
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ + QE IP S S VEA
Sbjct: 1492 VFTSEKASQEEDIPVKGSHSTKVEA 1516
Score = 54 (24.1 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 648 VPLLR-HQRIALSWMVQKE 665
+P+LR +QR A++WM+Q+E
Sbjct: 303 IPVLRPYQREAVNWMLQQE 321
Score = 48 (22.0 bits), Expect = 3.9e-41, Sum P(5) = 3.9e-41
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 55 RNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQ-KCSP 102
+++ QD L G N + S SG + + + EP E+ +C P
Sbjct: 395 QDVKQDALTLPEGKVVNYFIPSHYSGGKVKNTETQNMEFEPKEKVQCPP 443
Score = 45 (20.9 bits), Expect = 2.4e-45, Sum P(7) = 2.4e-45
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCS-PLQ 104
K+ G+L+L+ L + L++ S + SE S + +E E+ + P+
Sbjct: 112 KAFLGELTLQLLPEQSLIEHFSEKSFTLMSSESSDHFLIYVNSECEDVEKQEKGLNEPIS 171
Query: 105 TC 106
TC
Sbjct: 172 TC 173
Score = 42 (19.8 bits), Expect = 4.8e-45, Sum P(7) = 4.8e-45
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 76 SEISGAESGGLGDSSSQ--LEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFET 133
S+ S A LGDS + +++CS + S S S+ + GT P S+ ++ +
Sbjct: 46 SDFSSAHCIILGDSLKEEVAHKDKKRCS--EAVSISKSNDKEETCGTFSPLSIKLNIVIS 103
Query: 134 P 134
P
Sbjct: 104 P 104
Score = 39 (18.8 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDR--VKSSPGDLSLRNLSQDELV 63
G++S +++F D +GL + T + L + ++ R VK+ G S RN+ + +
Sbjct: 1177 GKLSMSEKFHDCRGLQFLLTTQMEELNKFQKLVREAVKNLEGPPS-RNVIESATI 1230
Score = 37 (18.1 bits), Expect = 5.1e-40, Sum P(5) = 5.1e-40
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 694 KERPPSFRTEDDNKRQLETLNLDEE 718
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKQQQLHW-NMHED 28
Score = 37 (18.1 bits), Expect = 1.3e-33, Sum P(5) = 1.3e-33
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 783 YVDIPHSNSE 792
Score = 37 (18.1 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 LGDSSSQLEPTEQKCSPLQTCSASFSDWF 114
+ ++ L+P +Q LQ S S W+
Sbjct: 1116 VAEAQQALQPVQQTIKELQRKIYSNSPWW 1144
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 296 (109.3 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 66/153 (43%), Positives = 94/153 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K ++FSQ+T ML L+E L D+ I Y +L G S R + V F EV V ++SL
Sbjct: 981 GRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQR-GEVPVFLISL 1037
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
+A +GLN+ AA V+ D WWNP E+QA DRA+RIGQ +PV V +L ++N++E++I
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
+QQ K E+ A A +E + LT D L+ L
Sbjct: 1098 IQQNKAEL-AKALLSEEVSDNKLSLTDDILDSL 1129
Score = 230 (86.0 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 60/205 (29%), Positives = 109/205 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 950 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 1008
+ F + + PI K+ K+L +K +LRRTK + LPPK +++ +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 1009 FTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1068
++ + Y + + + K+ A +K++ + +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLLK------ 954
Query: 1069 LLRSSVEMAKKLPQERQM-YLLNCL 1092
+E AKK+ Q ++ YL+ L
Sbjct: 955 -----LEGAKKVNQSAKLDYLMETL 974
Score = 98 (39.6 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 598 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 657
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 658 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 9.8e-45, Sum P(3) = 9.8e-45
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 635 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 690
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 691 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 749
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 750 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 804
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 805 ELAK--FDVVITTYSIVSMEV 823
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 44 (20.5 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQ 41
ADD GL + TL +L E++Q
Sbjct: 686 ADDMGLGKTIQTLAHLLIEKQQ 707
Score = 43 (20.2 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 1000 KVIMLKQVDFTDEERDFYSQLEINSRDQFK 1029
++I + + F DEE++ + ++ N++ F+
Sbjct: 262 RIIKAQPLCFYDEEKNCFGKINTNTQCDFE 291
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 296 (109.3 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 66/153 (43%), Positives = 94/153 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K ++FSQ+T ML L+E L D+ I Y +L G S R + V F EV V ++SL
Sbjct: 981 GRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQR-GEVPVFLISL 1037
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
+A +GLN+ AA V+ D WWNP E+QA DRA+RIGQ +PV V +L ++N++E++I
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
+QQ K E+ A A +E + LT D L+ L
Sbjct: 1098 IQQNKAEL-AKALLSEEVSDNKLSLTDDILDSL 1129
Score = 230 (86.0 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 60/205 (29%), Positives = 109/205 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 950 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 1008
+ F + + PI K+ K+L +K +LRRTK + LPPK +++ +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 1009 FTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1068
++ + Y + + + K+ A +K++ + +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLLK------ 954
Query: 1069 LLRSSVEMAKKLPQERQM-YLLNCL 1092
+E AKK+ Q ++ YL+ L
Sbjct: 955 -----LEGAKKVNQSAKLDYLMETL 974
Score = 98 (39.6 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 598 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 657
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 658 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 9.8e-45, Sum P(3) = 9.8e-45
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 635 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 690
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 691 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 749
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 750 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 804
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 805 ELAK--FDVVITTYSIVSMEV 823
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 44 (20.5 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQ 41
ADD GL + TL +L E++Q
Sbjct: 686 ADDMGLGKTIQTLAHLLIEKQQ 707
Score = 43 (20.2 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 1000 KVIMLKQVDFTDEERDFYSQLEINSRDQFK 1029
++I + + F DEE++ + ++ N++ F+
Sbjct: 262 RIIKAQPLCFYDEEKNCFGKINTNTQCDFE 291
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 243 (90.6 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 70/232 (30%), Positives = 115/232 (49%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + IM R K ++D I +PP
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAKKDVIDQ---IQIPP 907
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 908 QTEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLR 967
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 968 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Score = 223 (83.6 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 51/154 (33%), Positives = 89/154 (57%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + ++ P ++++++ L
Sbjct: 1519 GAKALVFSTWQDVLDIISKALTDNNMEFTQIS-RIKTFQENLSAFKYD--PHINILLLPL 1575
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1576 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1635
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+ + S+ G+ + + LTV L LF
Sbjct: 1636 MLKTAERSHTSSSGKHS---EASVLTVAGLADLF 1666
Score = 110 (43.8 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 709 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLR 767
Query: 821 MEV 823
E+
Sbjct: 768 SEL 770
Score = 79 (32.9 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 363 GGILADEMGLGKTVEVLALIL 383
Score = 67 (28.6 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQC---ICERLTADDNQCPTRNCKIRLSLSSVFSKATL 1154
C IC + V CGH FCN+C I E+ + ++ + C I +S + +
Sbjct: 1423 CPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIK-CAICRQTTSHKEVSYV 1481
Query: 1155 NNSLSQRQPGQEIPTDYSDSKLVEA 1179
S Q +IP S S VEA
Sbjct: 1482 FTSEKANQE-DDIPVKGSHSTKVEA 1505
Score = 54 (24.1 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 648 VPLLR-HQRIALSWMVQKE 665
+P+LR +QR A++WM+Q+E
Sbjct: 296 IPVLRPYQREAVNWMLQQE 314
Score = 50 (22.7 bits), Expect = 3.7e-41, Sum P(5) = 3.7e-41
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 687 STIALILKERPPSFRTEDDNKRQLETLNL---DEEDNGIQV 724
S+ +I+ E PP D KR+ ET+++ EE+ + V
Sbjct: 49 SSDCIIIDEGPPESALHRDKKRRSETVSVLEATEEETRLSV 89
Score = 37 (18.1 bits), Expect = 6.7e-24, Sum P(5) = 6.7e-24
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLL 1277
IKL +KA+ SQ K L L
Sbjct: 1381 IKLVNDKAVATSQLQKKLGQL 1401
Score = 37 (18.1 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 LGDSSSQLEPTEQKCSPLQTCSASFSDWF 114
+ ++ L+P +Q LQ S S W+
Sbjct: 1105 VAEAQQALQPVQQSIRELQRKIHSNSPWW 1133
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 238 (88.8 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 70/232 (30%), Positives = 113/232 (48%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP L + + IM R K ++D I +PP
Sbjct: 869 FLGVEPYCVRHWWVRLLYRPYCKKNP----HFLYSFIAKIMWRSAKKDVIDQ---IQIPP 921
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 922 QTEETHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 981
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 982 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1032
Score = 223 (83.6 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 53/154 (34%), Positives = 89/154 (57%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + ++ P+++++++ L
Sbjct: 1533 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSAFKYD--PQINILLLPL 1589
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1590 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1649
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+ K E S + + LTV DL LF
Sbjct: 1650 ML-KTAER--SHTNPSAKHSEASVLTVADLADLF 1680
Score = 111 (44.1 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 821 MEV 823
E+
Sbjct: 782 SEL 784
Score = 79 (32.9 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 373 GGILADEMGLGKTVEVLALIL 393
Score = 71 (30.1 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + + IR ++ S ++
Sbjct: 1437 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIRCAICRQTTSHKEISY 1494
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ + QE IP S S VEA
Sbjct: 1495 VFTSEKASQEEDIPVKGSHSTKVEA 1519
Score = 58 (25.5 bits), Expect = 2.4e-28, Sum P(7) = 2.4e-28
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 1192 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLD 1239
IKA +E +Q++ K + TN S +HS S+ D DL DT D
Sbjct: 1639 IKATIEERMQAMLKTAERSHTNPSAKHS-EASVLTVADLADLFTKDTED 1686
Score = 51 (23.0 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 649 PLLR-HQRIALSWMVQKE 665
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
Score = 46 (21.3 bits), Expect = 6.5e-45, Sum P(7) = 6.5e-45
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 476 DGRHLSLNLNGSRQYFPYAQPSTLNKKELD-GVKEDMEAEIKTR 518
D R+ L L Q +P PS ++ LD +KE++ K R
Sbjct: 28 DRRNEPLTLTDDEQSYPGLDPSPAHRIILDDSLKEEVAHREKKR 71
Score = 45 (20.9 bits), Expect = 1.3e-40, Sum P(5) = 1.3e-40
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 55 RNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQ-KCSP 102
+++ QD L G N + S SG + + EP E+ +C P
Sbjct: 398 QDVKQDALTLPEGEVVNYFIPSHYSGGNVKKTETQNMEFEPKEKVQCPP 446
Score = 40 (19.1 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEE-EKQP-DRVKSSPG 50
G++S +++F D +GL + T + L + +KQ + VK+ G
Sbjct: 1180 GKLSMSEKFHDCRGLQFLLTTHMEELSKFQKQVREAVKNLEG 1221
Score = 38 (18.4 bits), Expect = 6.6e-40, Sum P(5) = 6.6e-40
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 694 KERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 742
++R P R +++ ++QL N+ E+ L L E Y + P+
Sbjct: 5 RKRAPPVRVDEETQQQL-CWNMHEDRRN---EPLTLTDDEQSYPGLDPS 49
Score = 37 (18.1 bits), Expect = 4.6e-33, Sum P(5) = 4.6e-33
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 786 YVDIPHSNSE 795
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 248 (92.4 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 109/419 (26%), Positives = 176/419 (42%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 916
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 917 QTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLR 976
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGI-CNDPPEDA 1109
LRQAC HP V+G + L +S + LL L+ CG C +
Sbjct: 977 LRQACCHPQAVRG-EFLPLQKSFEQSTFSFSTMTMEELLTSLQKK---CGTECEEAHRQL 1032
Query: 1110 VVSICG----HVFCNQ-CICERLTADD-NQCPTRNCKIRL-SLSSVFSKATLNNSLSQRQ 1162
V ++ G H+ + + L + K++ SL + + L L R
Sbjct: 1033 VCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARH 1092
Query: 1163 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 1222
PG IP D +L E Y S E Q+L P T+ H L+ + +
Sbjct: 1093 PG--IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALY-PVQQTI--HELQRKIHSN 1147
Query: 1223 ICCPGDSNDLHGGD--TLDN--ISDENEKIAAKCSIDSIKLG-GEKAIVFSQWTKMLDL 1276
P N +H T+D + +I + + KL EK + F T+M +L
Sbjct: 1148 --SPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQMEEL 1204
Score = 228 (85.3 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 55/155 (35%), Positives = 90/155 (58%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1532 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKRDPQINILLLPL 1588
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1589 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1648
Query: 1381 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
L+ +R S+ E + LTV DL LF
Sbjct: 1649 MLKTAERSHTNSSAKHSEA----SVLTVADLADLF 1679
Score = 111 (44.1 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 821 MEV 823
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 68 (29.0 bits), Expect = 1.6e-25, Sum P(6) = 1.6e-25
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1436 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ + QE IP S S VEA
Sbjct: 1494 VFTSEKANQEEDIPVKGSHSTKVEA 1518
Score = 54 (24.1 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 648 VPLLR-HQRIALSWMVQKE 665
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 52 (23.4 bits), Expect = 8.0e-08, Sum P(6) = 8.0e-08
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 1192 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT 1237
IKA +E +Q++ K + TN S +HS S+ D DL +T
Sbjct: 1638 IKATIEERMQAMLKTAERSHTNSSAKHS-EASVLTVADLADLFTKET 1683
Score = 51 (23.0 bits), Expect = 4.8e-40, Sum P(5) = 4.8e-40
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 114 FNQNSGT-CCPESVGISQFETPGCSTASSFSEGDGYHF 150
FNQ T C ES+ + + P +T S F+ D Y F
Sbjct: 623 FNQEHETEDCAESLNHADSDVPPSNTMSPFNTSD-YRF 659
Score = 44 (20.5 bits), Expect = 8.1e-44, Sum P(6) = 8.1e-44
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQT 105
K+ G+L+L+ L L+++ S + SE S + +E +QK P+
Sbjct: 113 KAFLGELTLQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVE--KQKKEPMSI 170
Query: 106 C 106
C
Sbjct: 171 C 171
Score = 42 (19.8 bits), Expect = 1.8e-39, Sum P(4) = 1.8e-39
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKER 696
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 38 (18.4 bits), Expect = 4.7e-39, Sum P(4) = 4.7e-39
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 694 KERPPSFRTEDDNKRQLETLNLDEE 718
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
Score = 38 (18.4 bits), Expect = 9.8e-39, Sum P(5) = 9.8e-39
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 186 PSSITENFDERYGHYGASIGNR--LGSS-VPEGNLCTYVDVPYTDAEVSSHNVASTDSTI 242
PS +++ D+ Y +Y S NR L VP P+ + + H A++DS I
Sbjct: 552 PSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGK--SQPFINPDSQGHCPATSDSGI 609
Score = 37 (18.1 bits), Expect = 1.7e-32, Sum P(5) = 1.7e-32
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 245 (91.3 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 95/356 (26%), Positives = 157/356 (44%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 916
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 917 QTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLR 976
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 1110
LRQAC HP V+G + L +S++ M + L ++ C EA + +C A+
Sbjct: 977 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQL--VC------AL 1027
Query: 1111 VSICG-HVFCNQ-CICERLTADD-NQCPTRNCKIRL-SLSSVFSKATLNNSLSQRQPGQE 1166
+ G H+ + + L + K++ SL + + L L R PG
Sbjct: 1028 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPG-- 1085
Query: 1167 IPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 1222
IP D +L E Y S E Q+L P T+ H L+ + +
Sbjct: 1086 IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALY-PVQQTI--HELQRKIHSN 1138
Score = 228 (85.3 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 55/155 (35%), Positives = 90/155 (58%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1528 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKRDPQINILLLPL 1584
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1585 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1644
Query: 1381 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
L+ +R S+ E + LTV DL LF
Sbjct: 1645 MLKTAERSHTNSSAKHSEA----SVLTVADLADLF 1675
Score = 111 (44.1 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 821 MEV 823
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 673 GGILADDQGLGKTISTIALIL 693
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 68 (29.0 bits), Expect = 1.6e-25, Sum P(6) = 1.6e-25
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1432 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1489
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ + QE IP S S VEA
Sbjct: 1490 VFTSEKANQEEDIPVKGSHSTKVEA 1514
Score = 54 (24.1 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 648 VPLLR-HQRIALSWMVQKE 665
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 52 (23.4 bits), Expect = 9.9e-26, Sum P(6) = 9.9e-26
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 1192 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT 1237
IKA +E +Q++ K + TN S +HS S+ D DL +T
Sbjct: 1634 IKATIEERMQAMLKTAERSHTNSSAKHS-EASVLTVADLADLFTKET 1679
Score = 51 (23.0 bits), Expect = 9.6e-40, Sum P(5) = 9.6e-40
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 114 FNQNSGT-CCPESVGISQFETPGCSTASSFSEGDGYHF 150
FNQ T C ES+ + + P +T S F+ D Y F
Sbjct: 623 FNQEHETEDCAESLNHADSDVPPSNTMSPFNTSD-YRF 659
Score = 44 (20.5 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQT 105
K+ G+L+L+ L L+++ S + SE S + +E +QK P+
Sbjct: 113 KAFLGELTLQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVE--KQKKEPMSI 170
Query: 106 C 106
C
Sbjct: 171 C 171
Score = 42 (19.8 bits), Expect = 3.8e-39, Sum P(4) = 3.8e-39
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKER 696
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 40 (19.1 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDR--VKSSPGDLSLRNLSQDELV 63
G++S +++F D +GL + T + L + ++ R VK+ G S RN+ + V
Sbjct: 1175 GKLSMSEKFRDCRGLQFLLTTQMEELNKCQKLVREAVKNLEGPPS-RNVIESATV 1228
Score = 38 (18.4 bits), Expect = 9.8e-39, Sum P(4) = 9.8e-39
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 694 KERPPSFRTEDDNKRQLETLNLDEE 718
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(5) = 2.0e-38
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 186 PSSITENFDERYGHYGASIGNR--LGSS-VPEGNLCTYVDVPYTDAEVSSHNVASTDSTI 242
PS +++ D+ Y +Y S NR L VP P+ + + H A++DS I
Sbjct: 552 PSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGK--SQPFINPDSQGHCPATSDSGI 609
Score = 37 (18.1 bits), Expect = 3.4e-32, Sum P(5) = 3.4e-32
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 781 YVDIPHSNSE 790
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 242 (90.2 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 69/232 (29%), Positives = 115/232 (49%)
Query: 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 940
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 941 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 869 FLGIEPYCVKHWWVRLLYRPYCKKNP----QPLYSFIAKILWRSAKKDVIDQ---IQIPP 921
Query: 1000 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 1050
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 922 QTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 981
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 1101
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 982 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1032
Score = 223 (83.6 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 54/154 (35%), Positives = 88/154 (57%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1533 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKHDPQINILLLPL 1589
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1590 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1649
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+ K E S + + LTV DL LF
Sbjct: 1650 ML-KTAER--SHTNPSAKHSEASVLTVADLADLF 1680
Score = 111 (44.1 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 820
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 821 MEV 823
E+
Sbjct: 782 SEL 784
Score = 80 (33.2 bits), Expect = 6.7e-39, Sum P(6) = 6.7e-39
Identities = 36/135 (26%), Positives = 57/135 (42%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI---QVNGLDL 729
GGILAD+ GLGKT+ +ALIL T D K+ TL + N Q +G ++
Sbjct: 373 GGILADEMGLGKTVEVLALILTH------TRQDVKQDALTLPEGKVVNYFIPSQYSGENV 426
Query: 730 VKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCP--TSVLRQWAEELRN 781
E+ + P + V++ G+ L + +S+ R + RN
Sbjct: 427 KNTETQHMEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQ--RN 484
Query: 782 KVTSKGSLSVLVYHG 796
+ K L L++ G
Sbjct: 485 RSLLKRMLKCLIFEG 499
Score = 68 (29.0 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 1099 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 1156
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1437 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1494
Query: 1157 SLSQRQPGQE--IPTDYSDSKLVEA 1179
+ + QE IP S S VEA
Sbjct: 1495 VFTSEKASQEEDIPVKGSHSTKVEA 1519
Score = 54 (24.1 bits), Expect = 5.2e-25, Sum P(6) = 5.2e-25
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 1192 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLD 1239
IKA +E +Q++ K + TN S +HS S+ D DL +T D
Sbjct: 1639 IKATIEERMQAMLKTAERSHTNPSAKHS-EASVLTVADLADLFTKETED 1686
Score = 52 (23.4 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 13 VSAADEFADDQGLSIDMDTLLGILEEEKQPDRV-KSSPGDLSLRNLSQDELVQDVGSHSN 71
+S + + + G+S + L I+ D K+ G+L+L+ L + L+++ S
Sbjct: 78 ISKSIDKEETGGISSPLSVKLNIVISPYHLDNSWKALLGELTLQLLPEQSLMENFSERSF 137
Query: 72 LQLQSEISGAESGGLGDSSSQLEPTEQKCS-PLQTC 106
+ SE+S + +E E+ S P+ C
Sbjct: 138 TLVSSELSNQFLIYVHSECKDIEKQERGLSEPISMC 173
Score = 51 (23.0 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 649 PLLR-HQRIALSWMVQKE 665
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
Score = 46 (21.3 bits), Expect = 8.0e-41, Sum P(5) = 8.0e-41
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 55 RNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQ-KCSP 102
+++ QD L G N + S+ SG + EP E+ +C P
Sbjct: 398 QDVKQDALTLPEGKVVNYFIPSQYSGENVKNTETQHMEFEPKEKVQCPP 446
Score = 41 (19.5 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEE-EKQP-DRVKSSPG 50
G++S +++F D +GL + T + L + +KQ + VK+ G
Sbjct: 1180 GKLSMSEKFHDCRGLQFLLTTQMEELSKFQKQVREAVKNLEG 1221
Score = 37 (18.1 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 220 YVDVPYTDAE 229
YVD+P++++E
Sbjct: 786 YVDIPHSNSE 795
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 267 (99.0 bits), Expect = 6.0e-42, Sum P(4) = 6.0e-42
Identities = 56/157 (35%), Positives = 93/157 (59%)
Query: 876 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDL 935
L ++ ++ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+
Sbjct: 697 LSVEGISAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDM 756
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPI 994
YS +FLR PF + S+ K + +KG ++L + K+++LRRTK L G+P+
Sbjct: 757 YSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPL 812
Query: 995 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031
+ LP + L ++ +++ER Y SR + Y
Sbjct: 813 VPLPARSCQLHRLKLSEDERAVYDVFLARSRSALQSY 849
Score = 157 (60.3 bits), Expect = 6.0e-42, Sum P(4) = 6.0e-42
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 520 SEAIDE---LHRSLESCPGKTAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGI 573
Query: 676 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
LADD GLGKT++ IALIL ++ E D R L + L + D+ +
Sbjct: 574 LADDMGLGKTLTMIALILTKKNQQKSKEKD--RSLPVMWLSKNDSSV 618
Score = 152 (58.6 bits), Expect = 6.0e-42, Sum P(4) = 6.0e-42
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 760 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 819
+ GTL+VCP S++ W E+ +V S L + +YHG +R + L+ +D+VITTYS++
Sbjct: 621 STGTLIVCPASLIHHWKNEIEKRVNSN-KLRIYLYHGPNRIQHAKVLSTYDIVITTYSLL 679
Query: 820 SMEVP 824
+ E+P
Sbjct: 680 AKEIP 684
Score = 63 (27.2 bits), Expect = 6.0e-42, Sum P(4) = 6.0e-42
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 1033 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSV 1074
AA + + + V++L LLRLRQ C H L+K + S + ++V
Sbjct: 885 AADSRRPSTVHVLSQLLRLRQCCCHLSLLKSVRAPSGVTATV 926
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 332 (121.9 bits), Expect = 2.9e-41, Sum P(4) = 2.9e-41
Identities = 135/522 (25%), Positives = 215/522 (41%)
Query: 672 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 731
SGG+L D GLGKT+ ++L LK P + + + +K E LN D Q L+K
Sbjct: 637 SGGMLCDKMGLGKTLMILSLSLKNHP-IYSSHEIHK---EILN----DIKPQ-----LIK 683
Query: 732 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSL 789
+ Y + S S + K TLV+ P SVL+QW +L + L
Sbjct: 684 RRKKYFIGTDSSSDLSSSSSSSPTKITLPKSTLVILPFSVLKQWRNQLELHLQPDFLKKL 743
Query: 790 SVLVYHGSSR---TKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLP 846
++++YHG++R T+D +L K D V TT+ S+E +P
Sbjct: 744 NIIIYHGTNRKSITQD--QLIKADFVFTTHQTFSIEYSFYEKERKNKSSSAISTSLIPIP 801
Query: 847 PMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLD----IVAGPLAKVGWFRVVLDEAQSIK 902
+ + + + I+ PL + W+RV++DE+ K
Sbjct: 802 LINEDVIITTTTTTTTTTNNNNSNNNNNQKQISSKFTIIPPPLLCIHWWRVIIDESHKFK 861
Query: 903 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 962
H++ R+ L + RWCL+GTP QN DL+ FL P A K+ + K+ S
Sbjct: 862 -HKSLFFRSLQNLDSVNRWCLTGTPYQNNCTDLFPMLYFLNVFPIA--KNIATWRKLVES 918
Query: 963 KNPVKGYKK-LQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLE 1021
KK L+ L I+L R+K + + + ++I +++F E D YS +
Sbjct: 919 IQDQSEKKKILKKYLNPIILSRSKKDVRIQQNQVY--EEII---ELEFDQNESDAYSLVF 973
Query: 1022 INSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR----SSVEMA 1077
+S + F+ G + +Y +L ++LRLR+ CDH L K S L SS
Sbjct: 974 KDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSLTKPIQSTLNLGQFFCSSCFEE 1033
Query: 1078 KKLPQERQMYLLNCLEASLAICGI-----CNDPPEDAVVSICGHVFCNQCICERLTADDN 1132
P + + +C C I P D + S V C +C L N
Sbjct: 1034 IPSPHNENLLISDCDHLYCKACYIYLLVVVVRPINDQLNSHA-IVSCERCDTNPLQFTMN 1092
Query: 1133 QCPTRNCKIRLSLSSVFSK-----ATLNNSLSQRQPGQEIPT 1169
+ +++ +F K TL++S S + G PT
Sbjct: 1093 LQQEKYKQLKKKQKDLFDKFKEDSTTLSSSSSSQMGGASTPT 1134
Score = 227 (85.0 bits), Expect = 2.9e-41, Sum P(4) = 2.9e-41
Identities = 81/271 (29%), Positives = 129/271 (47%)
Query: 1155 NNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHS 1214
NN+ + +DYSD + + E + + KI + K N N+S
Sbjct: 1244 NNNNNNNNNNNNNNSDYSDDLVSKDDELE--FEQTFKITPKKGTRKRDIKSNNN---NYS 1298
Query: 1215 LRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE-KAIVFSQWTKM 1273
+ GSI D N+++ +L N S +N I A ++ + K + K IVFS WT
Sbjct: 1299 KKK--RGSII---DENEIN---SLKN-SQKN--IIA--NLKNAKGKNQLKGIVFSHWTMF 1345
Query: 1274 LDLLEASL--KD--SSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-----VMIMSLKAAS 1324
LDL+E SL D + + R+DG + + R+ + F +M+MS+
Sbjct: 1346 LDLIEESLIANDWIKDVDFCRIDGKLPISKREAIIDSFQAKSNNGNGGPRLMLMSITCGG 1405
Query: 1325 LGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1384
+GLN+ A V L++ W P+ E+QAI R RIGQTR + V R +K T+E +L L
Sbjct: 1406 IGLNLERANIVYLMEPSWTPSIEEQAIGRVDRIGQTRDIFVKRFIIKKTIEVGMLKLHDA 1465
Query: 1385 KREMVASAFGEDETGGQQT-RLTVDDLNYLF 1414
K+ + +DE ++ +LTV ++ LF
Sbjct: 1466 KKNNSNAFLTDDEIELEENPKLTVQEMKSLF 1496
Score = 45 (20.9 bits), Expect = 2.9e-41, Sum P(4) = 2.9e-41
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILAD 678
LL HQ+ + WM ++E +G L++
Sbjct: 574 LLEHQKEGIWWMRKRELEPFITNGQTLSE 602
Score = 37 (18.1 bits), Expect = 2.9e-41, Sum P(4) = 2.9e-41
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 353 ITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 390
I++ D + + S + R + F+KDE DD +
Sbjct: 127 ISIDDDEEIIDDIPFVDSENCRIT-IDFSKDEHEDDYY 163
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 257 (95.5 bits), Expect = 4.5e-41, Sum P(4) = 4.5e-41
Identities = 62/165 (37%), Positives = 93/165 (56%)
Query: 1251 KCSIDSIK--LGG--EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKD 1306
K ID ++ L G +K IV SQW L ++ L+D S + +G ++ R+ ++D
Sbjct: 773 KMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRD 832
Query: 1307 FNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVL 1366
FN E V+++SL A +GLN+ A H+L++DL WNP E QA DR +R GQT+P +
Sbjct: 833 FNANNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIY 892
Query: 1367 RLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLN 1411
R ++TVE RI +LQ K E+ E+ GG+ T+ LN
Sbjct: 893 RYMCQDTVEQRIKSLQDCKLEIAKVVLPEE--GGEVTKCVGGGLN 935
Score = 180 (68.4 bits), Expect = 4.5e-41, Sum P(4) = 4.5e-41
Identities = 48/148 (32%), Positives = 76/148 (51%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL V W RV+LDEA I+N +T + LRA W L+GTP+QN D+++ RF+
Sbjct: 440 PLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFVN 499
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
F + + K ++++ + G+++L ++K +MLRRTK L + LP I
Sbjct: 500 VPNFQDLQQW----KKNLNESML-GHRRLNFIIKPLMLRRTKQKLQASGDMPALPSLKIE 554
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEY 1031
L V + E Y L S+ F ++
Sbjct: 555 LICVQLSKTEMAVYQILSAISKKIFTQF 582
Score = 157 (60.3 bits), Expect = 4.5e-41, Sum P(4) = 4.5e-41
Identities = 43/133 (32%), Positives = 72/133 (54%)
Query: 697 PPSFRTEDDNKRQLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ- 754
PP RT +++ LD++DN + + ++ D P S E
Sbjct: 304 PPEKRTCHVKTKKINQFRILDDDDNDAGDKAV-VEDEQKDLLAKTPEPEVFSSDEEEEHL 362
Query: 755 AKGR-PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-FDVV 812
+ GR P+A TLVVCP SV+ QWA E+ +KV ++ ++ VL +HG +R + E + +D+V
Sbjct: 363 SNGRYPSANTLVVCPMSVMCQWAHEVASKV-AQNAIRVLTFHGPNRHEIGIEAFRSYDLV 421
Query: 813 ITTYSIVSMEVPK 825
IT+Y++V E+ +
Sbjct: 422 ITSYNLVVNELKR 434
Score = 151 (58.2 bits), Expect = 7.2e-41, Sum P(4) = 7.2e-41
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 704
+L V LL+HQ+ L WM +E + SGGILADD GLGKT+S IALIL R +
Sbjct: 204 LLLVRLLKHQQSCLKWMQFRERQKI--SGGILADDMGLGKTLSMIALILASEETKNRKRE 261
Query: 705 DNKRQLETLNLDEEDNGI 722
+ K+ L TL +E N +
Sbjct: 262 EKKKAL-TLKWTQEFNRV 278
Score = 74 (31.1 bits), Expect = 5.8e-30, Sum P(5) = 5.8e-30
Identities = 39/127 (30%), Positives = 56/127 (44%)
Query: 956 MIKVPISKNPVKGYKKLQAVLKTI----MLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 1011
+I V +SK + Y+ L A+ K I +L+R KG + P+ I
Sbjct: 555 LICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQFI----AGHMS 610
Query: 1012 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR 1071
+ER Y+ EI R K K + IL++LLRLRQ C HP L+ G +L
Sbjct: 611 DER--YN--EIYERF-LKSLGYNPGEKILGIYILVLLLRLRQFCCHPGLMIGMLRGALTA 665
Query: 1072 SSVEMAK 1078
V+ K
Sbjct: 666 EDVQNVK 672
Score = 41 (19.5 bits), Expect = 7.2e-41, Sum P(4) = 7.2e-41
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 60 DELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPL 103
D+LVQ + + Q Q E + +E+ L D LE + L
Sbjct: 74 DQLVQKILTMEQQQRQLEENASETKELCDLKLHLEKLNARLEAL 117
Score = 41 (19.5 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 469 SSSRSPIDG-RHLSLNLNGSRQYFPYAQPSTLNKKELDGVKE 509
SS +D R L L LN F + +PS K +D ++E
Sbjct: 741 SSFEDQLDSARALKL-LNPQNPIFQFIRPSAKLKMVIDKLEE 781
Score = 37 (18.1 bits), Expect = 4.5e-41, Sum P(4) = 4.5e-41
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 20 ADDQGLSIDMDTLLGILEEEKQPDR 44
ADD GL + + IL E+ +R
Sbjct: 234 ADDMGLGKTLSMIALILASEETKNR 258
Score = 37 (18.1 bits), Expect = 9.4e-41, Sum P(5) = 9.4e-41
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 280 LLSSEETATKPKDEEGEFTT 299
+L+SEET + ++E+ + T
Sbjct: 249 ILASEETKNRKREEKKKALT 268
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 263 (97.6 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 56/153 (36%), Positives = 89/153 (58%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLK 1321
K ++FSQWTK+LD+++ + + R+DG++ + R + +KDF+ S+ ++S +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 1322 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL-- 1379
A LG+N+ AA +L D WNP + QA+DR HRIGQT+PV V RL+ ++E R+L
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 1380 ALQQKKREMVASAFGE--DETGGQQTRLTVDDL 1410
A + K E V G+ E T L +D+
Sbjct: 662 AYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDI 694
Score = 179 (68.1 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 58/198 (29%), Positives = 93/198 (46%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W VV+DE +KNH+ ++ R L+ + L+GTP+QN + +L+S F+ D F
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 950 YKSFCSMI-----------KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
+ F S K K + KL +L+ +LRR K D E ++LP
Sbjct: 387 HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK---CDVE--LSLP 441
Query: 999 PKVIMLKQVDFTDEERDFYSQLEINSRD-QFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
K ++ TD ++ F L N+ + E A G + +N L+ ++LR+ C+H
Sbjct: 442 RKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLV--IQLRKNCNH 499
Query: 1058 PLLVKGFDSNSLLRSSVE 1075
P L++G S L VE
Sbjct: 500 PDLLQGQIDGSYLYPPVE 517
Score = 92 (37.4 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 801
G + ++ F+ KG G LV+ P S L W E+ + T S++ ++YHG +
Sbjct: 232 GKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIA-RFTP--SINAIIYHGDKNQR 288
Query: 802 D-------PCELA-KFDVVITTYSIVSMEVPKQPL 828
D P + KF +VIT+Y V+M K+ L
Sbjct: 289 DELRRKHMPKTVGPKFPIVITSYE-VAMNDAKRIL 322
Score = 72 (30.4 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q + W++ + L+ GILAD GLGKTI TI +
Sbjct: 202 LKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIGFL 241
Score = 46 (21.3 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1187 YNSSKIKAALEVLQSLAKPRGNTVTN 1212
YN++K K A+ + S +K G T+ +
Sbjct: 153 YNNTKAKRAVAAMISRSKEDGETINS 178
Score = 37 (18.1 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 18/88 (20%), Positives = 37/88 (42%)
Query: 678 DDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 737
D++ S +A L E + E + QL + L E+ I +NG++ Q+++
Sbjct: 80 DEEKANNAGSAVAPNLNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEPE 139
Query: 738 RVVPNGSSAKSFNFVEQAKGRPAAGTLV 765
+ G K+ + K + A ++
Sbjct: 140 KT-GRGRKRKAASQYNNTKAKRAVAAMI 166
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 391 (142.7 bits), Expect = 3.9e-39, Sum P(4) = 3.9e-39
Identities = 83/234 (35%), Positives = 135/234 (57%)
Query: 883 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 942
G L V +FRV+LDEA IKN R++ ARAC+ L+A RW L+GTPI N ++DL+S RFL
Sbjct: 641 GNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFL 700
Query: 943 RYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPK 1000
R +P+ + + + I P SK V+ +Q VL+ ++LRRTK +GEP++ LP +
Sbjct: 701 RVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKR 760
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
I +++V+ ++ER+ Y+ + ++ F AAGT+ ++Y I LLRLRQ C HP+L
Sbjct: 761 TIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPIL 820
Query: 1061 VKG---FDSNSLLRSSVEMAKKLPQERQMY-LLNCLEASLAICGICNDPPEDAV 1110
+ ++ + L + + L+N A+ + N+PP+ ++
Sbjct: 821 TRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSM 874
Score = 237 (88.5 bits), Expect = 1.6e-22, Sum P(4) = 1.6e-22
Identities = 93/379 (24%), Positives = 164/379 (43%)
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEA----SLAICGICNDPP 1106
L+ D L+ F + + S E + + P + + L S C IC++ P
Sbjct: 843 LKDDMDLQELINRFTATT---SDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEP 899
Query: 1107 E-DAVVSICGHVFCNQCICERLTAD-DNQCPTR--NCKIRLSLSSVFSKATLNNSLSQRQ 1162
D V+ C H C C+ + + D R +C+ L+ +F + + Q
Sbjct: 900 MIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIFE-------VVRYQ 952
Query: 1163 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 1222
PT+ + S + + V Y+SS+ + P + + H+
Sbjct: 953 SPNTTPTEQTPSSI----GGDNV-YSSSQPPPPPRISLRRINPLSPSAHTSAKIHALLAH 1007
Query: 1223 IC-CP-GDSNDLHGGDT--LDNISDENEKIAAK-CSIDSIKLGGEKAIVFSQWTKMLDLL 1277
+ P G + + T LD I + K +D +A V +Q+TK
Sbjct: 1008 LVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTKF---- 1063
Query: 1278 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337
E ++ Q + K K ++ +V+++SLKA +GLN+ AA +V +
Sbjct: 1064 ETFTQEELDQAESTSAPSGLTPTPKTPKQSSSPSSPTVLLISLKAGGVGLNLTAASNVFM 1123
Query: 1338 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397
+D WW+ E QAIDR HR+GQ R V+V+R VK+++E+R+L +Q++K +A + G
Sbjct: 1124 MDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIVKDSIEERMLRVQERKMG-IAGSLGLMG 1182
Query: 1398 TGGQQTRLT--VDDLNYLF 1414
G ++ R +++L LF
Sbjct: 1183 EGNEEERRKERIEELRLLF 1201
Score = 92 (37.4 bits), Expect = 3.9e-39, Sum P(4) = 3.9e-39
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 670 HCSGGILADDQGLGKTISTIALILKER--PPS 699
HC GGILAD+ GLGKTI ++L+ R PP+
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPPT 540
Score = 81 (33.6 bits), Expect = 3.9e-39, Sum P(4) = 3.9e-39
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 799
TLVV P S+L QW E K + GS+ VL+Y+G+ +
Sbjct: 561 TLVVAPMSLLAQWEGEAL-KASRNGSMKVLMYYGNEK 596
Score = 47 (21.6 bits), Expect = 3.9e-39, Sum P(4) = 3.9e-39
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 323 KVPAIDYLDAKRQCED---SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMV 379
K PA+D + D S NG P + +G + QP T + + + + +
Sbjct: 31 KSPALDASSSASTHTDPNYSANGSPAQIQTQQEYNFSNGGHATQPATAAGTRTHQAQSP- 89
Query: 380 FAKDEGND-DLFPCWSTVSDSVEPIDEAVGRNSSYHDG 416
A D +D D S V + V P E + + DG
Sbjct: 90 -AHDTLSDFDTEAFVSIVGEQVSP--ETLSQIRKLSDG 124
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 232 (86.7 bits), Expect = 4.2e-39, Sum P(5) = 4.2e-39
Identities = 63/217 (29%), Positives = 102/217 (47%)
Query: 880 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 939
++ PL ++ W+R+ LDEAQ ++++ L K RWC++GTPIQ +DDL+
Sbjct: 590 VIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLL 649
Query: 940 RFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
+FL+ +PF V + + +I+ P + K + K +M R +K + D + LPP
Sbjct: 650 KFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE---LQLPP 706
Query: 1000 KVIMLKQVDFTDEERDFYSQ------------LEINSRDQFKEYAAAG----TVKQNYVN 1043
+ + + F+ E FYS+ +E RD K +
Sbjct: 707 QEECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAK 766
Query: 1044 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKL 1080
+L LL+LRQAC HP V SL +S + M + L
Sbjct: 767 LLNSLLKLRQACCHPQ-VGSSGLRSLQQSPMTMEEIL 802
Score = 205 (77.2 bits), Expect = 4.2e-39, Sum P(5) = 4.2e-39
Identities = 57/164 (34%), Positives = 87/164 (53%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDG------TMSVF-ARDKAVKDFNTLPE--- 1312
K +VFS W +LD+LE + +SI R+ G +S F +K + N+ +
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1510
Query: 1313 -VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
+ V+++ ++ + GLN++ A HV+L++ NP E QA+ R HRIGQ +P V R V
Sbjct: 1511 SIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVS 1570
Query: 1372 NTVEDRILALQQKKREMVASAFGEDETGGQ-QTRLTVDDLNYLF 1414
TVE+ I L + K ++S F T Q Q LT+ DL LF
Sbjct: 1571 GTVEESIYKLNRNKNTNLSS-FSSRNTKNQDQQFLTLKDLESLF 1613
Score = 104 (41.7 bits), Expect = 4.2e-39, Sum P(5) = 4.2e-39
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRTKDPC----ELAKFDVVITT 815
TL+VCP +L QW E+ + T GSL +Y G +S +++P EL D+V+TT
Sbjct: 502 TLIVCPAPILPQWHSEI-TRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 816 YSIVSMEV 823
Y ++ ++
Sbjct: 561 YDVLKEDL 568
Score = 82 (33.9 bits), Expect = 4.2e-39, Sum P(5) = 4.2e-39
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 665 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS 699
E S GGILAD+ GLGKT+ +A I R P+
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPA 383
Score = 70 (29.7 bits), Expect = 1.6e-22, Sum P(5) = 1.6e-22
Identities = 59/269 (21%), Positives = 111/269 (41%)
Query: 980 MLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYS----QLEI----NSRDQFKEY 1031
+L R + LL IN+ + L++ ++++ Y+ +L++ N+ D+F
Sbjct: 1230 VLARDQAQLLRAYDEINMSTMRLQLRE---SEDDTSIYALGRDELDVASVLNTNDKFMAQ 1286
Query: 1032 AAAGTVKQNYVNIL-LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 1090
++ ++K + LM + +Q + P D +S + +V+ + QE + N
Sbjct: 1287 SSLLSIKGKLRYLKGLMKSKQKQESESP------DLSSPIHETVDASDPAEQESE----N 1336
Query: 1091 CLEASLAICGICNDPPEDA-VVSICGHVFCNQC---ICERLTADDN-----QCPTRNCKI 1141
L+ A C IC++ + +V CGH C C + ER + + CP C+
Sbjct: 1337 LLKRDEA-CPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPI--CRQ 1393
Query: 1142 RLSLSSVFSKATLNNSLSQRQPGQE----IPTDYSDSKLVEAPSCEGVWYNSSKIKAALE 1197
+ ++ NS S Q ++ + S +EA + +W SS + +
Sbjct: 1394 HTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRILWIKSSDPQTKVL 1453
Query: 1198 VLQSLAKPRGNTVTNHSLRHSFNG-SICC 1225
V S N V + L H+F SI C
Sbjct: 1454 VFSSW-----NDVLD-VLEHAFAANSITC 1476
Score = 50 (22.7 bits), Expect = 4.2e-39, Sum P(5) = 4.2e-39
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 630 QGISQPNAEASAPDGVL-AVPLLR-HQRIALSWMVQKE 665
+ I +A D + +P LR +QR A WMVQ+E
Sbjct: 266 EAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMVQRE 303
Score = 44 (20.5 bits), Expect = 9.3e-23, Sum P(5) = 9.3e-23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1351 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1383
+DR ++ T+ + L + K V R+LA Q
Sbjct: 1203 LDRESKLAATKHLHTLEVMRKEYVHARVLARDQ 1235
Score = 37 (18.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 445 AKEEHEDLILESKRARFCQEI 465
A++E E+L+ + C EI
Sbjct: 1330 AEQESENLLKRDEACPICHEI 1350
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 236 (88.1 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
Identities = 58/164 (35%), Positives = 92/164 (56%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPE 1312
I++IK E ++F+Q+ M ++L+ L++ Q L+G++ RDK ++ F
Sbjct: 759 IENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQN-GT 817
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ I+SLKA GLN+ AA HV+ D WWNP E+QA DRA+RIGQ R V V +L
Sbjct: 818 YDIFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTG 877
Query: 1373 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416
T+E++I + ++K+ + + D T L+ D+L L V
Sbjct: 878 TLEEKIDEMLERKQSLNNAVITSDSW---MTELSTDELKELLGV 918
Score = 222 (83.2 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
Identities = 61/193 (31%), Positives = 101/193 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L+ + W V+LDEAQ+IKN T+ ++A L+A + L+GTP++N + +L+S F F+ +
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINH 625
Query: 945 DPFAVYKSFCSMIKVPISKNPVKG-YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
F PI K+ +G +++Q + +LRRTK D +NLP K
Sbjct: 626 GYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTKK---DQTVALNLPDKQEQ 682
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL-VK 1062
T E+ Y QL + Q E +G ++ + ILLML +L+Q C+HP L +K
Sbjct: 683 KAYCPLTGEQASLYEQL-VQDTLQNVE-GLSGIERRGF--ILLMLNKLKQICNHPALYLK 738
Query: 1063 GFDSNSLLRSSVE 1075
+ ++ S++
Sbjct: 739 ETEPKDIIERSMK 751
Score = 82 (33.9 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE---LAKFDVVITTYSIVS 820
L+V PTSVL W +E + L V +++GS+R K L DVV+T+Y++
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPN---LRVQLHYGSNRAKGESFKDFLQSADVVLTSYALAQ 560
Query: 821 ME 822
++
Sbjct: 561 LD 562
Score = 72 (30.4 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT 702
L L +Q+ + W++ G +LADD GLGK+I TI +L + + +T
Sbjct: 447 LHATLRPYQQHGIEWLLYLRKLGF---GALLADDMGLGKSIQTITYLLYIKENNLQT 500
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 266 (98.7 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 56/164 (34%), Positives = 94/164 (57%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
++ + G++ ++FSQ+TKML ++ L +I Y LDG R + FN E
Sbjct: 905 LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNE-GEG 963
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++SLKA GLN+ A V+L DLWWNP E QA DRA+R+GQ V V++L T
Sbjct: 964 DLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGT 1023
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQ-TRLTVDDLNYLFMV 1416
+E+++ LQ+ K+ ++A E G ++ + +T +++ + M+
Sbjct: 1024 IEEKMHELQESKKNLIAEVI---EPGEEKLSSITEEEIRDILMI 1064
Score = 186 (70.5 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 895 LDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 954
LDEAQ+ KN TQ ARA ++A+ R+ L+GTP++N++++L+S F + + K F
Sbjct: 737 LDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKEFG 796
Query: 955 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 1014
+ + I+K +K +LRR K +L LP K+ L+ + +++
Sbjct: 797 DLRREDIAKR-----------VKPFVLRRLKEDVLK-----ELPDKIEHLQSSELLPDQK 840
Query: 1015 DFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVKGFDSNS 1068
Y+ R++ ++ T+++N + IL L RLRQ C HP L V + +S
Sbjct: 841 RLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSS 895
Score = 92 (37.4 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 625 LQVAMQGISQPNA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLG 683
+Q ++ I P + + P + AV + +Q WM +T + + GGILADD GLG
Sbjct: 588 VQDLVESIQNPKKLKFTVPQTLRAV-MREYQVYGFEWM---KTLAYYRFGGILADDMGLG 643
Query: 684 KTISTIALI 692
KT+ +IA I
Sbjct: 644 KTLQSIAYI 652
Score = 75 (31.5 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEV 823
LVV P+S++ W EL+ K + + + R K ++A+FDVVIT+Y ++ ++
Sbjct: 667 LVVSPSSLVYNWLSELK-KFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDI 725
Score = 42 (19.8 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 19 FADD-QGLSIDMDTLLGILEE 38
F DD +G S + LL ILEE
Sbjct: 887 FVDDYKGSSAKFEQLLDILEE 907
Score = 37 (18.1 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 370 SHSSRTKQMVFAKDEGNDD 388
+H TK++ A +GN+D
Sbjct: 34 NHYDETKEICEATVKGNED 52
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 237 (88.5 bits), Expect = 1.0e-38, Sum P(5) = 1.0e-38
Identities = 58/221 (26%), Positives = 119/221 (53%)
Query: 1167 IPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCP 1226
+ TD + +LV+ + +G + +KI++ ++ + ++ K T+ + + + + +
Sbjct: 1620 LSTDKENGELVDNSNVKGSY--GTKIESLVQSVINIQKKSIKTIQPNIIPTTTSTTTTTT 1677
Query: 1227 GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSI 1286
+ + + T NI+ + + +SI +K I+FSQW +L+++ +LK++ I
Sbjct: 1678 TTTTNTNTNTTNSNINIKKD--------ESI----QKIIIFSQWADVLEIISRALKENEI 1725
Query: 1287 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346
Q+ + S F + A+ F P V+V+++ L GLN++ A HV L++ NP
Sbjct: 1726 QFAKAVHRGSSF--EMAINQFRKDPNVNVLLLPLIKGGNGLNLIEATHVFLVEPILNPAL 1783
Query: 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1387
E QAI+R HR GQ + ++ R +KNT+E++++ + Q K +
Sbjct: 1784 EKQAINRVHRFGQNKETNIHRFIIKNTIEEKVVQMNQLKEQ 1824
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(5) = 1.0e-38
Identities = 62/206 (30%), Positives = 105/206 (50%)
Query: 888 VGWFRVVLDEAQSIKNH-RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+ W+R+ LDEAQ +++ +T+ + GL + RWCL+GTPIQ ++DD++ F FLR +P
Sbjct: 847 IKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSLDDMFGLFEFLRLEP 906
Query: 947 FAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM-L 1004
F+ Y C ++ ++ ++ ++M+R +K ++ E + LP +
Sbjct: 907 FSSRYWWNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSKA-MIRNE--LQLPNQYDNDT 963
Query: 1005 KQVDFTDEERDFYSQLEINSRDQ-----FKEYAAAGTVKQN----YVN-ILLMLLRLRQA 1054
K + F+ E +Y Q + N Q F++Y G Q+ ++N IL LL LRQ
Sbjct: 964 KLLRFSMVEAHYY-QKKANECSQEARLLFQKYFRGGRSIQDISISHLNSILAPLLVLRQT 1022
Query: 1055 CDHPLLVKGFDSNSLLRSSVEMAKKL 1080
C H V G L S++ M + L
Sbjct: 1023 CQH-FQVGGHAVKPLTMSTMTMEQLL 1047
Score = 114 (45.2 bits), Expect = 1.0e-38, Sum P(5) = 1.0e-38
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVS 820
TL+V P ++ QW EE+ V L V +Y+G + K +P +LA +D+V+TTY ++S
Sbjct: 762 TLIVAPNTIFTQWQEEI---VKHTNGLKVYIYNGIYKDKINPFQLADYDLVLTTYDVLS 817
Score = 81 (33.6 bits), Expect = 9.9e-23, Sum P(5) = 9.9e-23
Identities = 33/161 (20%), Positives = 73/161 (45%)
Query: 1097 AICGICNDP-PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLN 1155
+IC IC + ++ V+ +CGH FC C+ + N C T C I + S++
Sbjct: 1563 SICAICQEVFGKNVVMLLCGHSFCYDCVMFMIEKVPN-CRTIQCPICRARSNI------- 1614
Query: 1156 NSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSL 1215
+S + TD + +LV+ + +G + +KI++ ++ + ++ K T+ + +
Sbjct: 1615 EEISY------LSTDKENGELVDNSNVKGSY--GTKIESLVQSVINIQKKSIKTIQPNII 1666
Query: 1216 RHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDS 1256
+ + + + + + T NI+ + ++ K I S
Sbjct: 1667 PTTTSTTTTTTTTTTNTNTNTTNSNINIKKDESIQKIIIFS 1707
Score = 79 (32.9 bits), Expect = 1.0e-38, Sum P(5) = 1.0e-38
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 661 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 698
++ + L GGILAD+ GLGKT+ + L+L P
Sbjct: 539 LLSDKKDDLSLMGGILADEMGLGKTVEFLGLVLSHPKP 576
Score = 40 (19.1 bits), Expect = 1.0e-38, Sum P(5) = 1.0e-38
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 400 VEPIDEAVGRNSSYHDGCNSFPFKDS 425
+E +DE ++SS +D NS DS
Sbjct: 357 IEMVDEPDNQDSSNNDHNNSLSTIDS 382
Score = 38 (18.4 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 527 LSPES-IQSNSSDCKSHVDDEPDICIL 552
LS +S +N+++ S V DE IC +
Sbjct: 1541 LSTKSNTNTNNNNNNSTVTDEKSICAI 1567
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 258 (95.9 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 62/154 (40%), Positives = 84/154 (54%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K ++FSQ+T ML L+E L+ I Y +L G + R + F + V ++SL
Sbjct: 947 GRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQE-GDTPVFLISL 1003
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA GLN+ AA V+ D WWNP E QA DRAHRIGQ PV V +L + TVE++I
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+QQ K+ + S G Q + D+L LF
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQG--SADELLSLF 1095
Score = 196 (74.1 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 893 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 952
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 953 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 1011
F + I + + K L + +LRRTK E + LPPK + + ++
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 1012 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++R+ Y + ++ + +E A V +++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVK 920
Score = 114 (45.2 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 743 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 798 SRTKDPCELAKFDVVITTYSIV 819
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 100 (40.3 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 51 (23.0 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 8 WLC--GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPG 50
WLC E ADD GL + TL +L++ KQ +KS+ G
Sbjct: 642 WLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQ-KQ---LKSAAG 682
Score = 37 (18.1 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 329
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 258 (95.9 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 62/154 (40%), Positives = 84/154 (54%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G K ++FSQ+T ML L+E L+ I Y +L G + R + F + V ++SL
Sbjct: 947 GRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQE-GDTPVFLISL 1003
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA GLN+ AA V+ D WWNP E QA DRAHRIGQ PV V +L + TVE++I
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
+QQ K+ + S G Q + D+L LF
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQG--SADELLSLF 1095
Score = 196 (74.1 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 893 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 952
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 953 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 1011
F + I + + K L + +LRRTK E + LPPK + + ++
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 1012 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++R+ Y + ++ + +E A V +++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVK 920
Score = 114 (45.2 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 743 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 798 SRTKDPCELAKFDVVITTYSIV 819
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 100 (40.3 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 51 (23.0 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 8 WLC--GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPG 50
WLC E ADD GL + TL +L++ KQ +KS+ G
Sbjct: 642 WLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQ-KQ---LKSAAG 682
Score = 37 (18.1 bits), Expect = 5.2e-38, Sum P(4) = 5.2e-38
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 329
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 255 (94.8 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 55/141 (39%), Positives = 86/141 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1301 DKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358
++A++ FN +P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIG
Sbjct: 545 EEAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 603
Query: 1359 QTRPVSVLRLTVKNTVEDRIL 1379
Q +PV V RL NTVE+RI+
Sbjct: 604 QKKPVRVFRLITDNTVEERIV 624
Score = 195 (73.7 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 273 (101.2 bits), Expect = 4.8e-37, Sum P(5) = 4.8e-37
Identities = 53/132 (40%), Positives = 82/132 (62%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G +A++F+Q TKMLD+ E L + Y RLDG+ + R + FNT P++ +
Sbjct: 1391 LKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLF 1450
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ LGLN+ A V+ D WNP+ + QA DR HRIGQTR V++ R ++T+E+
Sbjct: 1451 ILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEE 1510
Query: 1377 RILALQQKKREM 1388
IL +KR++
Sbjct: 1511 NILKKSNQKRQL 1522
Score = 173 (66.0 bits), Expect = 4.8e-37, Sum P(5) = 4.8e-37
Identities = 52/177 (29%), Positives = 89/177 (50%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEA IKN +TQ + +RR L+GTP+QN + +L+S FL D F
Sbjct: 903 WVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQS 962
Query: 950 YKSFCSMIKVPISKNPVKG--------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G +L AVL+ +LRR K D E +PPK
Sbjct: 963 HREFQDWFSNPVT-GMIEGGDDVNEDIINRLHAVLRPFLLRRLKK---DVEK--QMPPKH 1016
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
+ + ++ Y + INS + ++G+ + +I+ +L++LR+ C+HP
Sbjct: 1017 THIVPCSMSRRQKFLYEEF-INSSST-QSTLSSGS----FFSIINILMQLRKVCNHP 1067
Score = 107 (42.7 bits), Expect = 4.8e-37, Sum P(5) = 4.8e-37
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 632 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 691
++ N P +L PL +Q I L W+V +L+ GILAD+ GLGKTI TI+L
Sbjct: 764 LNTSNVRTKVPF-LLKFPLREYQHIGLDWLVSLYEKNLN---GILADEMGLGKTIMTISL 819
Query: 692 I 692
I
Sbjct: 820 I 820
Score = 75 (31.5 bits), Expect = 4.8e-37, Sum P(5) = 4.8e-37
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 818
L+V P+SVL W E+ K G L + YHG+SR + + F V IT+YS+
Sbjct: 834 LIVVPSSVLFNW--EMEFKRWCPG-LKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 819 V 819
V
Sbjct: 891 V 891
Score = 47 (21.6 bits), Expect = 4.9e-31, Sum P(5) = 4.9e-31
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 700 FRTEDDNKRQL--ETLNLDEEDNGIQVNG---LDLVKQESD 735
F T D++ L + +N +E+D+G Q+ L+ +K ES+
Sbjct: 657 FNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
Score = 43 (20.2 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 704 DDNKRQ--LETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVE 753
DD K+Q L LNLD++ + +NG K E ++C NG S S F++
Sbjct: 197 DDIKQQQQLSLLNLDQDKLQL-ING----KVE-EFCN--SNGFSFYSQIFID 240
Score = 39 (18.8 bits), Expect = 4.5e-36, Sum P(6) = 4.5e-36
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 43 DRVKSSPGDLSLRNLSQDEL------VQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPT 96
D +K LSL NL QD+L V++ + + S+I L +S L+PT
Sbjct: 197 DDIKQQQ-QLSLLNLDQDKLQLINGKVEEFCNSNGFSFYSQIFIDNLSSL--TSKSLQPT 253
Score = 39 (18.8 bits), Expect = 1.9e-12, Sum P(6) = 1.9e-12
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 1208 NTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDN 1240
N N++ +++ GS+ D+N+L+ + N
Sbjct: 1869 NNNNNNNNNNNYGGSLTNQYDNNNLNNNNNNKN 1901
Score = 38 (18.4 bits), Expect = 4.8e-37, Sum P(5) = 4.8e-37
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 410 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQN 440
N + CNS F Q FI SL S++
Sbjct: 219 NGKVEEFCNSNGFSFYSQIFIDNLSSLTSKS 249
Score = 37 (18.1 bits), Expect = 4.5e-36, Sum P(6) = 4.5e-36
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 403 IDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESK 457
+DE G Y+D N+ S ++ + + +KE E+L LES+
Sbjct: 644 VDED-GNEIEYNDDFNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
Score = 37 (18.1 bits), Expect = 7.1e-36, Sum P(6) = 7.1e-36
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 68 SHSNLQLQSEISGAESGGLGDSSSQLEPT 96
S S+ + SG GG+ + + PT
Sbjct: 324 SSSSTSTSTSTSGTPIGGINTTPTNTTPT 352
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 255 (94.8 bits), Expect = 6.5e-37, Sum P(5) = 6.5e-37
Identities = 55/141 (39%), Positives = 86/141 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1301 DKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358
++A++ FN +P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIG
Sbjct: 545 EEAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 603
Query: 1359 QTRPVSVLRLTVKNTVEDRIL 1379
Q +PV V RL NTVE+RI+
Sbjct: 604 QKKPVRVFRLITDNTVEERIV 624
Score = 195 (73.7 bits), Expect = 6.5e-37, Sum P(5) = 6.5e-37
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 6.5e-37, Sum P(5) = 6.5e-37
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 6.5e-37, Sum P(5) = 6.5e-37
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 4.5e-15, Sum P(5) = 4.5e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 862 ANEKYGRDDIDNIAREVE 879
Score = 38 (18.4 bits), Expect = 6.5e-37, Sum P(5) = 6.5e-37
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 257 (95.5 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 73/226 (32%), Positives = 117/226 (51%)
Query: 1188 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 1247
NSS + +L L + R NH + F+G+ P + D H + + +
Sbjct: 443 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVGNSGKM 492
Query: 1248 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF 1307
+A + IK G + ++FSQ T++LD+LE +Y RLDG R++A+ F
Sbjct: 493 VALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAF 552
Query: 1308 NTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365
N P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ +PV V
Sbjct: 553 NA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 611
Query: 1366 LRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1410
RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 612 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 657
Score = 192 (72.6 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 306 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 365
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 366 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 420
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 421 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 472
Score = 91 (37.1 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 178 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 226
Score = 58 (25.5 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 240 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 296
Query: 819 VSME 822
V E
Sbjct: 297 VIKE 300
Score = 42 (19.8 bits), Expect = 1.3e-14, Sum P(5) = 1.3e-14
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 863 ANEKYGRDDIDNIAREVE 880
Score = 37 (18.1 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 141 SLISVGDYRHRRTEQEEDEELLSESRK 167
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 300 (110.7 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 64/162 (39%), Positives = 97/162 (59%)
Query: 1236 DTLDNISDENEKIAAKCS-----IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
DT +SD++ ++AKC + S+K G + ++FSQWT MLD+LE +L + YRR
Sbjct: 574 DTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRR 633
Query: 1291 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1350
LDG+ V R V FN + ++S +A GLN+ A V++ D+ +NP + QA
Sbjct: 634 LDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQA 693
Query: 1351 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1392
DR HRIGQT+PV++ RL K+TV++ I + KR++V A
Sbjct: 694 EDRCHRIGQTKPVTIFRLVTKSTVDENIYEIA--KRKLVLDA 733
Score = 110 (43.8 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 46/205 (22%), Positives = 95/205 (46%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947
W V++DEA ++K+ + + + A +R L+GTP+QN + +L+S F+ D F
Sbjct: 347 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIF 406
Query: 948 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
+K ++ + +++++L +LRR K ++ L PK+ ++ V
Sbjct: 407 TTENVD---LKKLLNAEDTELITRMKSILGPFILRRLKSDVMQ-----QLVPKIQRVEYV 458
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVK--QNYVNILLMLL----------RLRQAC 1055
++ D Y + + ++++ + A VK +N L L + R+
Sbjct: 459 LMERKQEDAYKE----AIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIA 514
Query: 1056 DHPLLVKGFDSNSLLRSSVEMAKKL 1080
+HPLL++ S+ + +A+KL
Sbjct: 515 NHPLLIRRIYSDE---DVIRIARKL 536
Score = 89 (36.4 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR---TKDPCELAK------FDVVIT 814
LVVCP SVL W ELR S +VL YHG++R +++ L+K F+V++
Sbjct: 267 LVVCPASVLENWERELRKWCPS---FTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 815 TYSIVSMEVPKQ 826
YS+ +Q
Sbjct: 324 CYSLFERHSEQQ 335
Score = 65 (27.9 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 649 PLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
P+L+ +Q + +++++ + G ILAD+ GLGKTI I +
Sbjct: 211 PILKPYQLVGVNFLLLLYKKGIE--GAILADEMGLGKTIQAITYL 253
Score = 52 (23.4 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 34/138 (24%), Positives = 50/138 (36%)
Query: 10 CGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSH 69
C E+ + D + D LL EEE + +V + R + +DE D
Sbjct: 66 CVEIEDLGDSDSDVKIVNGEDLLLED-EEEVEETKVVMRAARVGRRFVIEDEEASDDDDD 124
Query: 70 SNLQLQSEIS-GAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGI 128
SE G GG G + E K LQ C+ +D + GT +
Sbjct: 125 EAESSASEDEFGGGGGGSGGRRGEDEDVVGKA--LQKCAKISADLRKELYGTSSGVTDRY 182
Query: 129 SQFETPGCSTASSFSEGD 146
S+ ET ST ++ D
Sbjct: 183 SEVET---STVRIVTQND 197
Score = 46 (21.3 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 8 WLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQ 64
W E D F + ++D+ LL E+ + R+KS G LR L D + Q
Sbjct: 395 WSLLEFMLPDIFTTE---NVDLKKLLNA-EDTELITRMKSILGPFILRRLKSDVMQQ 447
Score = 37 (18.1 bits), Expect = 7.2e-24, Sum P(4) = 7.2e-24
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 916 RAKRRWCLSGTPIQ 929
R R+WC S T +Q
Sbjct: 280 RELRKWCPSFTVLQ 293
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 219 (82.2 bits), Expect = 3.3e-36, Sum P(5) = 3.3e-36
Identities = 56/165 (33%), Positives = 86/165 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR----LDGTMSVFARDKAVKDFNT 1309
++ I G++ + F+Q+T+ +LL L + R L G RD+ V F +
Sbjct: 842 LEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 901
Query: 1310 LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1369
+ ++SLKA GLN+ AA HV+ LD WWNP E+QA DRA RIGQ R V V +
Sbjct: 902 GDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFI 961
Query: 1370 VKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
T+E++I + ++K+ + + E G T L+ DL +F
Sbjct: 962 CTGTLEEKIDEMIEEKKALADLVVTDGE--GWLTELSTRDLREVF 1004
Score = 205 (77.2 bits), Expect = 3.3e-36, Sum P(5) = 3.3e-36
Identities = 53/175 (30%), Positives = 93/175 (53%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
LA+ W RVVLDEAQ++KN ++ A+A LRA R L+GTP++N + +L+S FL
Sbjct: 651 LAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFLNP 710
Query: 945 DPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
+ F + +PI ++ + ++L+A + +LRR K D I +LP K+ +
Sbjct: 711 GLLGSSERFRTRYAIPIERHGHTEPAERLRASTRPYILRRLK---TDPAIIDDLPEKIEI 767
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
+ T E+ Y + + ++ + G ++ N+L + +L+Q C+HP
Sbjct: 768 KQYCQLTTEQASLYQAVVADMMEKIEN--TEGIERRG--NVLAAMAKLKQVCNHP 818
Score = 83 (34.3 bits), Expect = 3.3e-36, Sum P(5) = 3.3e-36
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 691
PDG A L +Q+ L+W+ + L G LADD GLGKT+ +AL
Sbjct: 526 PDGFTAT-LRPYQQRGLAWLAFLSSLGL---GSCLADDMGLGKTVQLLAL 571
Score = 81 (33.6 bits), Expect = 3.3e-36, Sum P(5) = 3.3e-36
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 752 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---ELAK 808
V++ + R TL++CP S++ W +E + L V +HG +R L +
Sbjct: 577 VQRHQDRGVGPTLLLCPMSLVGNWPQEAARFAPN---LRVYAHHGGARLHGEALRDHLER 633
Query: 809 FDVVITTYSIVSMEV 823
D+V++TY+ + ++
Sbjct: 634 TDLVVSTYTTATRDI 648
Score = 44 (20.5 bits), Expect = 3.3e-36, Sum P(5) = 3.3e-36
Identities = 21/88 (23%), Positives = 33/88 (37%)
Query: 182 VDASPSSITENFDERYG--HYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTD 239
VD P++ FD+ YGAS+ +V L V +H A+
Sbjct: 98 VDLDPTAALAAFDQPAPDVRYGASVDYLAELAVFARELVERGRV-LPQLRRDTHGAAACW 156
Query: 240 STICHGSEIISDDDYYSAMP--CYINTG 265
+ G ++++ SAMP C G
Sbjct: 157 RPVLQGRDVVAMTSLVSAMPPVCRAEVG 184
Score = 41 (19.5 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 1168 PTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVT 1211
P D V A +G W AA LQ L P G T T
Sbjct: 490 PDDVDTPLEVTAVRADG-WLGDLLAGAAAASLQPLDPPDGFTAT 532
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 304 (112.1 bits), Expect = 3.8e-36, Sum P(4) = 3.8e-36
Identities = 64/168 (38%), Positives = 99/168 (58%)
Query: 1222 SICCP-GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEAS 1280
++C P G + + D I+D + + +K G + +++SQ TKM+DLLE
Sbjct: 1132 ALCKPHGGWSSIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEY 1191
Query: 1281 LKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340
+ +Y RLDG+ + AR V DF T ++ V ++S +A LG+N+ AA V+ D
Sbjct: 1192 MWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDS 1251
Query: 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1388
WNPT + QA+DRAHR+GQT+ V+V RL K T+E+RIL ++K E+
Sbjct: 1252 DWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 1299
Score = 159 (61.0 bits), Expect = 3.8e-36, Sum P(4) = 3.8e-36
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
++ W +VLDEAQ+IK+ +Q + G + R LSGTPIQN++ +L++ F+
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 947 FAVYKSFCSMIKVPI---SKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F + F I ++N K +L +LK MLRR K + + E L
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDV-ENE----LSD 774
Query: 1000 KVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV----KQNYVNILLMLLRLRQAC 1055
K+ ++ T ++ Y L+ R + + +G+ + N++ ++++ R+ C
Sbjct: 775 KIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVC 834
Query: 1056 DHPLLVKGFDSNS 1068
+HP L + D+ S
Sbjct: 835 NHPELFERRDARS 847
Score = 74 (31.1 bits), Expect = 3.8e-36, Sum P(4) = 3.8e-36
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 615 KSKASDERLILQVAMQGIS-QPNAEAS-APDGVLAVPLLRHQRI-ALSWMVQKETSSLHC 671
K K +E Q +++ I +P E P + L+ +I ++W+ +
Sbjct: 497 KKKEKEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI-- 554
Query: 672 SGGILADDQGLGKTISTIALI 692
GILAD+ GLGKT+ +IA +
Sbjct: 555 -SGILADEMGLGKTVQSIAFL 574
Score = 57 (25.1 bits), Expect = 3.8e-36, Sum P(4) = 3.8e-36
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-------DPCEL----AKFDVV 812
LV+ P S L W +E+ V V+ Y GS + D L A F VV
Sbjct: 588 LVISPASTLHNWQQEMSRFVPD---FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVV 644
Query: 813 ITTYSIV 819
IT+Y +V
Sbjct: 645 ITSYQLV 651
Score = 46 (21.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 1029 KEYAAAGTVKQN-YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMY 1087
KE +K N + +L R+ C + + +S +++ +V AK+L +E Y
Sbjct: 320 KESGRLQRIKSNNHKEMLANCKRVAGMCAKVVRQRAINSQRIMKETVWRAKRLTREMLAY 379
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 272 (100.8 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 64/169 (37%), Positives = 93/169 (55%)
Query: 1238 LDNISDENEKIAAKC-SIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1296
++N E+ K+ +I + + G++ ++FSQ+T ML ++ L++ +DG
Sbjct: 889 VENYQGESGKLLQLFDTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTP 948
Query: 1297 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1356
R V FN E + ++SLKA GLN+V A V+L DLWWNP E+QA RAHR
Sbjct: 949 SKTRLDMVNAFNE-GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHR 1007
Query: 1357 IGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQT 1403
IGQ R V V R+ K T+E+RI LQ+KK+ +V GE G T
Sbjct: 1008 IGQKRVVQVFRMITKGTIEERIFDLQKKKQALVDELIQPGEQMLGKLST 1056
Score = 143 (55.4 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 41/139 (29%), Positives = 73/139 (52%)
Query: 879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 938
DIV A V + V++DE+Q+IKN+ T+ ++A L+ + LSGTP++N+ID+L++
Sbjct: 726 DIVH--FADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAI 783
Query: 939 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
F+ L F + F ++P Y + +++ +LRR K ++ LP
Sbjct: 784 FQTLMPGFFPSLRKFK---EIP--------YDNIAKMIRPFLLRRLKQDVVK-----ELP 827
Query: 999 PKVIMLKQVDFTDEERDFY 1017
K+ + TDE++ Y
Sbjct: 828 DKIETNLYSELTDEQKTIY 846
Score = 111 (44.1 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 67/263 (25%), Positives = 107/263 (40%)
Query: 445 AKEEHEDLILES--KRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY-FPYAQ-PSTLN 500
++EE+E +++ K AR I S+ G + +N Y F Y P
Sbjct: 409 SEEENEKIMIRDVEKEARVMNII---ESAPVHFSGTKMVVNKQEKDLYQFYYRTIPKLAE 465
Query: 501 KKEL---DGVKEDMEAEIKTRSMASHLLKLSPES-IQSNSSDCKSHVDDEPDICILEDIS 556
E+ DG++E +E + R + + L +S ++ S S D K ++E +LE +
Sbjct: 466 YAEIYMEDGLEEMVEENV--RPVTT--LDVSGDNDYLSVSFDFKGIPEEEVQN-VLESLR 520
Query: 557 QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQH-SSYSDYPGYPGVPL---TGLG 612
+ RS L G+ LS+ L V + + P Y G+ + G G
Sbjct: 521 EK-RSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPLYRGMQIYDILGAG 579
Query: 613 GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCS 672
R ++ +Q + P G+ A L +Q WM +L
Sbjct: 580 AQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKA-ELRDYQLTGFEWMKSLAKYNL--- 635
Query: 673 GGILADDQGLGKTISTIALILKE 695
GGILADD GLGKT+ TI+ + E
Sbjct: 636 GGILADDMGLGKTVQTISFLASE 658
Score = 85 (35.0 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 969 YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF 1028
Y + +++ +LRR K ++ LP K+ + TDE++ Y L + Q
Sbjct: 803 YDNIAKMIRPFLLRRLKQDVVK-----ELPDKIETNLYSELTDEQKTIY--LAYLEKIQA 855
Query: 1029 KEYAAAGTVKQNYVNILLMLLRLRQ-ACDHPLLVKGF--DSNSLLR--SSVEMAKK 1079
A+ G + + +L L RLRQ CD L V+ + +S LL+ +++ A++
Sbjct: 856 DLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARE 911
Score = 58 (25.5 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 743 GSSAKSFNFV-EQAKGRP-AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--S 798
G + ++ +F+ + + P L++ P S+L W EL + + V V HG+ S
Sbjct: 646 GKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPA---IPVTVLHGTKQS 702
Query: 799 RTKDPCELAKFDVVITTYSIVSMEV 823
R + E+ V + +Y + ++
Sbjct: 703 RIAEMEEMKHGHVYLISYPSLRQDI 727
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 237 (88.5 bits), Expect = 8.4e-36, Sum P(4) = 8.4e-36
Identities = 49/156 (31%), Positives = 94/156 (60%)
Query: 1237 TLDNISDENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTM 1295
T +++ D + K+A + +K G + ++FSQ ++MLD+LE + +Y R+DG+
Sbjct: 572 TGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGST 631
Query: 1296 SVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354
R+ +++++N ++ +++ +A LG+ + A V+L D WNP + QA DRA
Sbjct: 632 ESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRA 691
Query: 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
HRIGQT+PV+V R +N++E++++ + K ++ A
Sbjct: 692 HRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDA 727
Score = 178 (67.7 bits), Expect = 8.4e-36, Sum P(4) = 8.4e-36
Identities = 51/178 (28%), Positives = 89/178 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +++DEA IKN + +++ ++ R ++GTP+QN + +L+S FL D
Sbjct: 395 KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDV 454
Query: 947 FAVYKSFCSMIKVPIS-KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 1005
F+ F + + +N + KL VL+ +LRR K T ++ +LPPK +
Sbjct: 455 FSSSDDFDKWFDLANNTENQQEVIDKLHKVLRPFLLRRIK-TEVEK----SLPPKKEIKL 509
Query: 1006 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + ++++Y +L D A T + +NI + +LR+AC+HP L G
Sbjct: 510 FVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICM---QLRKACNHPYLFDG 564
Score = 95 (38.5 bits), Expect = 8.4e-36, Sum P(4) = 8.4e-36
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 609 TGLGGMKSKASDERLILQVAMQGISQP---NAEASAPDGVLAVPLLRHQRIALSWMVQKE 665
T G + +A DE I+ M+ +P N S+P + + + +Q L+W++Q
Sbjct: 234 TKRGHITEEAEDEA-IMNETMEE-EEPHSFNFFTSSPPYIKSGTMRDYQVYGLNWLIQLY 291
Query: 666 TSSLHCSGGILADDQGLGKTISTIALI 692
++ GILAD+ GLGKT+ TI+L+
Sbjct: 292 ERGIN---GILADEMGLGKTLQTISLL 315
Score = 77 (32.2 bits), Expect = 8.4e-36, Sum P(4) = 8.4e-36
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-----LAKFDVVITTYSI 818
L++ P S L WA+E L V+ +HGS ++ + KFDV ITTY +
Sbjct: 329 LIIAPKSTLSGWAKEFTRWCPF---LRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEV 385
Query: 819 VSME 822
E
Sbjct: 386 AIRE 389
Score = 41 (19.5 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKE 1030
LKQ+ +++R +LE N R Q +E
Sbjct: 141 LKQI--REQQRKQLQELEKNQRQQLQE 165
Score = 39 (18.8 bits), Expect = 4.8e-30, Sum P(4) = 4.8e-30
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 666 TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 725
T++ S + + + TIS+ + P S +++N+ E + +E D+ + N
Sbjct: 32 TTTTSSSSSSVGNKRNESPTISSSG---NQSPKSMENDNENEED-EVMEEEEVDDN-EEN 86
Query: 726 GLD 728
G D
Sbjct: 87 GND 89
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 286 (105.7 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 58/140 (41%), Positives = 91/140 (65%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF P++ V
Sbjct: 1333 LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVF 1392
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL ++T+E+
Sbjct: 1393 LLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEE 1452
Query: 1377 RIL--ALQQKKREMVASAFG 1394
RI ALQ+++ + V + G
Sbjct: 1453 RIRKRALQKEEVQRVVISGG 1472
Score = 161 (61.7 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 52/191 (27%), Positives = 89/191 (46%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
KV W ++LDEAQ+IK+ ++ ++ G + R L+GTPIQN + +L++ F+
Sbjct: 924 KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTL 983
Query: 947 FAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F + F I + K +L +LK MLRR K + L
Sbjct: 984 FDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----ELGD 1038
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
KV D T +R Y+ L ++ D E AA G + + ++ ++++ R+ C+H
Sbjct: 1039 KVEKDVFCDLTYRQRALYTNLRNRVSIMDLI-EKAAVGD-ETDSTTLMNLVMQFRKVCNH 1096
Query: 1058 PLLVKGFDSNS 1068
P L + ++ S
Sbjct: 1097 PDLFERAETKS 1107
Score = 83 (34.3 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 638 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
E S P +L L +Q L+W+V ++ GILAD+ GLGKTI +I+++
Sbjct: 787 EISQPT-MLTAKLKEYQLKGLNWLVNLYEQGIN---GILADEMGLGKTIQSISVM 837
Score = 60 (26.2 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF-DVVITTYS 817
LV+ P S L W +E+ V + + VL Y G++ KD L KF D TY+
Sbjct: 851 LVIAPASTLHNWQQEITKFVPN---IKVLPYWGNA--KDRKILRKFWDRKHITYT 900
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 278 (102.9 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 55/130 (42%), Positives = 82/130 (63%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K GG +A++F+Q TKMLD+LEA + Y RLDG+ R ++ FNT P++ +
Sbjct: 1087 LKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLF 1146
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+V A V+ D WNP + QA DR HRIGQTR V + RL ++T+E+
Sbjct: 1147 ILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE 1206
Query: 1377 RILALQQKKR 1386
IL +KR
Sbjct: 1207 NILKKANQKR 1216
Score = 154 (59.3 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 52/182 (28%), Positives = 87/182 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEA IKN ++Q + +KRR L+GTP+QN + +L+S FL F
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
Query: 950 YKSFCSMIKVPISKNPVKGYKK--------LQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F PI+ V+G +K L VL+ +LRR K D E LP K
Sbjct: 718 HQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLRPFLLRRLKR---DVEK--QLPSKH 771
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+ + +R+ Y ++ Q A ++ ++ ++++LR+ C+HP L
Sbjct: 772 EHVIFCRLSKRQRNLYEDFIASTETQ------ATLTSGSFFGMISIIMQLRKVCNHPDLF 825
Query: 1062 KG 1063
+G
Sbjct: 826 EG 827
Score = 95 (38.5 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q I L W+V L+ GILAD+ GLGKTI TIAL+
Sbjct: 536 LREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIMTIALL 575
Score = 67 (28.6 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 818
L+V PTSV+ W E + +L Y GS++ + +L F V ITTY +
Sbjct: 589 LIVVPTSVMLNWETEFLKWCPA---FKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRL 645
Query: 819 V 819
V
Sbjct: 646 V 646
Score = 45 (20.9 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 1235 GDTLDNISD-ENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1293
G D I D + EK + K + K I + Q + +LD LE S S+ +D
Sbjct: 1569 GKKRDLIVDTDEEKTSKKKAKKHKKSLPNSDIKYKQTSALLDELEPSKPSDSMV---VDN 1625
Query: 1294 TMSVFARDKAV-KDFNTLPEVSVMIM 1318
+ + R K V K F T + ++M
Sbjct: 1626 ELKLTNRGKTVGKKFITSMPIKRVLM 1651
Score = 37 (18.1 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 575 RSACSNHSVALGKPVVTS 592
R C++ + G+P+V+S
Sbjct: 816 RKVCNHPDLFEGRPIVSS 833
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 335 (123.0 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 105/347 (30%), Positives = 161/347 (46%)
Query: 1087 YLLNCLEASL-AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ------CPTRNC 1139
+L+ ++ S IC C D + V + CGH FC C + + DN CP C
Sbjct: 1301 HLIRHIDTSTDVICNSCKDIAVNPVKNHCGHDFCLDCFEDLVRNPDNNNNRVSLCP--EC 1358
Query: 1140 KIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV- 1198
L L + NN + G+ I K+ + + N SK L++
Sbjct: 1359 DSELILQDNTNGDDSNN----KNNGKSI------KKIANLNNSKKSKTNLSKKSQYLDIE 1408
Query: 1199 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNI-SDENEKIAAKCS---I 1254
Q + + L + N I ++ + +D++ S + + + I
Sbjct: 1409 RQDQLYNQTERQFQNELHNRLNQLIERQRENQEAKQMSKIDSLFSTKVKTLLGDIQNDLI 1468
Query: 1255 DSIKLGGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTL 1310
D+ EK ++ SQWT MLDL+E SLK + + Y R DG S +DKA+K N
Sbjct: 1469 DNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAIKQLNED 1528
Query: 1311 PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1370
+V VM++SLK+ +GLN+ A V ++D WWN +E QA R HRIGQTR V V R +
Sbjct: 1529 DDVRVMLVSLKSGGVGLNLTRANRVYMVDPWWNEASEVQAEGRVHRIGQTREVFVKRYIM 1588
Query: 1371 KNTVEDRILALQQKKREMVASAFGEDETGGQ---QTRLTVDDLNYLF 1414
N++E RIL LQ+ K E+ + +D + +L V+D+ LF
Sbjct: 1589 NNSIEIRILELQESKNEIANALLSDDYDPTKPFKNFKLNVEDIKLLF 1635
Score = 276 (102.2 bits), Expect = 3.4e-29, Sum P(6) = 3.4e-29
Identities = 90/292 (30%), Positives = 141/292 (48%)
Query: 872 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 931
G DG I L + W+RV++DE+Q K +T + + L A +WCLSGTPI N
Sbjct: 1127 GNDG---SIPLPALLTIHWWRVIIDESQVCKI-KTLIFKGLQNLDAIHKWCLSGTPISNY 1182
Query: 932 IDDLYSYFRFLRYDPFAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLD 990
+DD+Y FL P A K++ +I P K + L+ V+ I+LRR K +LD
Sbjct: 1183 LDDIYPSLHFLNCYPIAQDLKTWRKLIDRP------KNLELLKKVINPILLRREKSEILD 1236
Query: 991 GEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLR 1050
LP K + +DF + E D Y L +++ ++ + G + +NY +L +LLR
Sbjct: 1237 ----FKLPKKNKEIVYLDFNENEADDYDTLFSVAQETLQKISCRGGILKNYATVLALLLR 1292
Query: 1051 LRQACDHPLLVKGFDSNS--LLRSSVEMAKKLPQERQM---YLLNCLEASLAICGICNDP 1105
LRQ CDH L++ D+++ + S ++A P + + L+C E L + N
Sbjct: 1293 LRQCCDHFHLIRHIDTSTDVICNSCKDIAVN-PVKNHCGHDFCLDCFE-DL----VRNPD 1346
Query: 1106 PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNS 1157
+ VS+C +C E + D+ N K + S+ A LNNS
Sbjct: 1347 NNNNRVSLCP-----ECDSELILQDNTNGDDSNNKN--NGKSIKKIANLNNS 1391
Score = 110 (43.8 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 758 RPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSLSVLVYHGSSRTK--DPCELAKFDVVI 813
+P A TL++CP S++ QW E++ + L + YHG++R K +L D+VI
Sbjct: 1042 KPKA-TLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNLMDIVI 1100
Query: 814 TTYSIVSMEVPK 825
TT++ +E K
Sbjct: 1101 TTHNTFGIEFKK 1112
Score = 84 (34.6 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 672 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETL 713
+GG+L D+ GLGKT+ +IALI+ P F T K + +
Sbjct: 982 AGGLLCDEMGLGKTVMSIALIMSNHPV-FSTHRQQKEAYDEI 1022
Score = 60 (26.2 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 65 DVGSHSN-LQLQSEISGAE--SGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTC 121
D+ S SN +++ E+S + GL DS++++E +E+K +P + S + ++ ++ T
Sbjct: 74 DINSSSNTIKINEEVSELKPTKTGLNDSTNEIE-SEKKDTPSTSTSITSTNSTTTSTTTT 132
Query: 122 CPESVGIS 129
P S IS
Sbjct: 133 PPISNVIS 140
Score = 54 (24.1 bits), Expect = 6.7e-35, Sum P(6) = 6.7e-35
Identities = 27/98 (27%), Positives = 39/98 (39%)
Query: 17 DEFAD-----DQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSN 71
DEF D D + D+D L I + K D + L Q+ELV+D G
Sbjct: 323 DEFIDLENDSDNNNNDDLDDLNEIEDLNKISDNSDEDEYEEELEEEDQEELVED-GDEDE 381
Query: 72 LQLQSEI----------SGAESGGLGDSSSQLEPTEQK 99
L+ E SG GG+ D + PT+++
Sbjct: 382 ALLEKEADDEDDFKEIGSGGGGGGVIDDIIKNTPTKKQ 419
Score = 46 (21.3 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 612 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 665
GG K++ + L ++ A+ APD L L HQ+ L WM+ +E
Sbjct: 884 GGNKNEINPRDLFVKKAL-------LTTEAPDS-LKSQLKHHQKEGLWWMLGRE 929
Score = 42 (19.8 bits), Expect = 1.1e-33, Sum P(6) = 1.1e-33
Identities = 57/249 (22%), Positives = 93/249 (37%)
Query: 222 DVPYTDAEVSSHNVASTDSTICHG-SEIISDD-----DYYSAMPCYINTGDTIFGDPSSF 275
D P T ++S N +T +T S +IS D DY + S
Sbjct: 111 DTPSTSTSITSTNSTTTSTTTTPPISNVISVDSTDNEDYQPKKEIKKKNNKKVKNKKSKE 170
Query: 276 NFQHLLSSEETATKPKDEEGEFTTE----IACSSSGLVLNAQGGPGKG-SMLKVPAIDYL 330
+++ ++ ++EE + T E I SSS L+ P K S+L + I
Sbjct: 171 EECIIINEKKEINIDQEEEDQPTQEVDYSITNSSSSLI-----SPTKSNSILNIKVIASK 225
Query: 331 DAKRQCEDSKNGLPIYGNSLSNIT--LGD---GKRSAQPCTYSHSHSSRTKQMVFAKDEG 385
+ + K L I N L T L D GK+ + ++ T + F G
Sbjct: 226 TEETTVKPIKPRLVIR-NELEIRTKHLNDYEWGKKMNEVMGLDNTQIPSTLKASFRNRSG 284
Query: 386 NDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFP-FKDSGQSFIGL-SPSLLSQNQVV 443
L + D +E ++ + R+ S+ N+ P + FI L + S + N +
Sbjct: 285 GSFL-KALAMAKDYLERNNKQIKRDISF---LNTDPEIGNEDDEFIDLENDSDNNNNDDL 340
Query: 444 HAKEEHEDL 452
E EDL
Sbjct: 341 DDLNEIEDL 349
Score = 41 (19.5 bits), Expect = 1.7e-35, Sum P(6) = 1.7e-35
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 545 DEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 582
D+ D L D P+RSN + T + N + +N++
Sbjct: 621 DDLDSKRLIDFRTPSRSNSTTTTTTTTTNNNNNNNNNN 658
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(6) = 1.8e-05
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 1333 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV--SVLRLTVKNTVEDRILALQQKKREMVA 1390
C+ + DL T + IDR + + V +L K+ + D L +K +E+V
Sbjct: 1195 CYPIAQDL----KTWRKLIDRPKNLELLKKVINPILLRREKSEILD--FKLPKKNKEIVY 1248
Query: 1391 SAFGEDETGGQQTRLTV 1407
F E+E T +V
Sbjct: 1249 LDFNENEADDYDTLFSV 1265
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 294 (108.6 bits), Expect = 1.9e-35, Sum P(4) = 1.9e-35
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 1237 TLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1294
++D E+ K+A + ID +K GG + +++ Q T+M+ + E L S +Y RLDG+
Sbjct: 1227 SMDRFIAESGKLAKLDELLID-LKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGS 1285
Query: 1295 MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354
++ +R + V+ + T PE+ + ++S +A LGLN+ +A V+ D WNPT + QA+DRA
Sbjct: 1286 TTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRA 1345
Query: 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1388
HRIGQT+ V V RL +NT+E +IL ++K E+
Sbjct: 1346 HRIGQTKQVKVFRLVTRNTIEQKILERAKEKEEI 1379
Score = 161 (61.7 bits), Expect = 1.9e-35, Sum P(4) = 1.9e-35
Identities = 53/192 (27%), Positives = 88/192 (45%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K+ W ++LDEAQ+IK+ + ++ L + R L+GTPIQN++ +L++ F+
Sbjct: 798 KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSI 857
Query: 947 FAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F + F I + ++L +LK MLRR K + L
Sbjct: 858 FDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKNVQS-----ELGD 912
Query: 1000 KVIMLKQVDFTDEERDFYSQL--EINSRD-QFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
KV + D T ++ Y QL +I+ D E + T + + L+M + R+ C+
Sbjct: 913 KVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVM--QFRKVCN 970
Query: 1057 HPLLVKGFDSNS 1068
HP L + D NS
Sbjct: 971 HPDLFERADVNS 982
Score = 76 (31.8 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 55/208 (26%), Positives = 83/208 (39%)
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL---MLLRLRQAC--DHP 1058
L+ ++ + E YSQ +I SR + T K +N L + + ++ DH
Sbjct: 1055 LQGINVSPNELKHYSQKDILSRAIEMQNKPTETEKLERINYLYEGDYIPKNKKLLITDHS 1114
Query: 1059 LLVKG-FDSNSLLRSS-VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGH 1116
F SNSL+ S V + +K+ Q+ MYL N LE A+ I + PP V+
Sbjct: 1115 TSTNSSFISNSLVFSDLVSIKEKVSQD--MYL-NKLEP--AVTPIASAPP--ITVNCSSM 1167
Query: 1117 VFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL 1176
F N+ D N R+ I LSLS+ L Q +P D
Sbjct: 1168 NFTNKM--NNTLFDSN---IRSSLIPLSLSTELKLMKDQIPLEQYPKSNMLPMPIFDYSN 1222
Query: 1177 VEAPSCEGVWYNSSKIKAALEVLQSLAK 1204
+ PS + S K+ E+L L +
Sbjct: 1223 IRMPSMDRFIAESGKLAKLDELLIDLKR 1250
Score = 73 (30.8 bits), Expect = 1.9e-35, Sum P(4) = 1.9e-35
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 667 MLKCTLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVL 711
Score = 56 (24.8 bits), Expect = 1.9e-35, Sum P(4) = 1.9e-35
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 809
LVV P S L W +E+ V VL Y G++ KD L KF
Sbjct: 725 LVVTPASTLHNWQQEITKFVPE---FKVLPYWGNA--KDRKILRKF 765
Score = 38 (18.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 28/136 (20%), Positives = 56/136 (41%)
Query: 209 GSSVPEGNLCTYVD-VPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAM-PCY--INT 264
G +P+ D T++ S+++ +D + E +S D Y + + P I +
Sbjct: 1099 GDYIPKNKKLLITDHSTSTNSSFISNSLVFSD--LVSIKEKVSQDMYLNKLEPAVTPIAS 1156
Query: 265 GDTIFGDPSSFNFQHLLSSE--ETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSML 322
I + SS NF + +++ ++ + +TE+ + L P K +ML
Sbjct: 1157 APPITVNCSSMNFTNKMNNTLFDSNIRSSLIPLSLSTELKLMKDQIPLEQY--P-KSNML 1213
Query: 323 KVPAIDYLDAKRQCED 338
+P DY + + D
Sbjct: 1214 PMPIFDYSNIRMPSMD 1229
Score = 37 (18.1 bits), Expect = 9.2e-23, Sum P(4) = 9.2e-23
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1015 DFYSQLEINSRDQFKEYAAAGT 1036
D + + ++NS F ++A G+
Sbjct: 973 DLFERADVNSPFSFGKFAETGS 994
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 264 (98.0 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 57/137 (41%), Positives = 81/137 (59%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
+ ++F+Q +KMLD+L+ L QY RLDGT V R ++ FN P+V I+S ++
Sbjct: 1206 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRS 1265
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
+G+N+ A V+ D WNPT + QA DR HRIGQTR VS+ RL + T+E+ IL
Sbjct: 1266 GGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKA 1325
Query: 1383 QKKREMVASAFGEDETG 1399
+KR + A DE G
Sbjct: 1326 TQKRRLGELAI--DEAG 1340
Score = 183 (69.5 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 56/180 (31%), Positives = 93/180 (51%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q +A +RA+RR L+GTP+QN++ +L+S FL F+
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 950 YKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
+ F P++ P+ G +L VL+ +LRR K + E LP K
Sbjct: 740 HDDFKDWFSNPLTGMMEGNMEFNAPLIG--RLHKVLRPFILRRLKKEV---EK--QLPEK 792
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ + +R Y + SR KE +G N +++L ++++LR+ C+HP L
Sbjct: 793 TEHIVNCSLSKRQRYLYD--DFMSRRSTKENLKSG----NMMSVLNIVMQLRKCCNHPNL 846
Score = 97 (39.2 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 614 MKSKASDERL--ILQVAMQGIS-QPNAEASAPDGVLA-VPLL------RHQRIALSWMVQ 663
+ S+ SDER + +A + + QP V VP L +Q + L WMV
Sbjct: 512 LNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMVT 571
Query: 664 KETSSLHCSGGILADDQGLGKTISTIALI 692
+L+ GILAD+ GLGKTI TI+L+
Sbjct: 572 LYEKNLN---GILADEMGLGKTIQTISLL 597
Score = 67 (28.6 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-------FDVVITTY 816
L+V PTSV+ W E + + L +L Y G++ K+ E K F V IT+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCPA---LKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 817 SIVSMEV 823
V+ ++
Sbjct: 666 KTVTQDI 672
Score = 57 (25.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 335 QCEDSKNGLPIY-GNSLSNITL 355
QC S +GLP Y N+LSNI L
Sbjct: 1131 QCRPSSSGLPSYIRNNLSNIEL 1152
Score = 45 (20.9 bits), Expect = 7.8e-14, Sum P(5) = 7.8e-14
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1167 IPTDYSDSKLVEAPSCEGVWYNSSKI 1192
I D SDS L+ PS +Y SS +
Sbjct: 1483 IDLDDSDSLLLNDPSTSADFYQSSSL 1508
Score = 42 (19.8 bits), Expect = 7.0e-30, Sum P(6) = 7.0e-30
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 702 TEDDNKRQLETLNLDEEDNGIQVNGLDL 729
++D ++RQ E N+ EE Q G L
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTL 541
Score = 41 (19.5 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 49 PGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSA 108
P L L+Q++L +++ L+ Q A GD+ ++E E S Q S
Sbjct: 425 PEYLKAYGLTQEDL-EEM-KREKLEEQK----ARKEACGDNEEKMEIDESPSSDAQKPST 478
Query: 109 SFSD 112
S SD
Sbjct: 479 SSSD 482
Score = 41 (19.5 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 493 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICIL 552
Y + L +++L+ +K + E K R A + E +S SSD + D+
Sbjct: 427 YLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTA- 485
Query: 553 EDISQP 558
E + P
Sbjct: 486 EQLQDP 491
Score = 40 (19.1 bits), Expect = 7.9e-14, Sum P(4) = 7.9e-14
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 588 PVVTSQHSSYSDYPGYPGVPLTGL--GGMKSKA 618
P + S H + D+ + PLTG+ G M+ A
Sbjct: 734 PTIFSSHDDFKDW--FSN-PLTGMMEGNMEFNA 763
Score = 39 (18.8 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 1125 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEG 1184
E + D QC + + + + S LN+ T S S+ ++ P
Sbjct: 1123 EPVLTDAWQCRPSSSGLPSYIRNNLSNIELNSRSLLLNTSTNFDTRMSISRALQFPELRL 1182
Query: 1185 VWYNSSKIKAALEVLQSL 1202
+ Y+ K++ +L+ L
Sbjct: 1183 IEYDCGKLQTLAVLLRQL 1200
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 242 (90.2 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2066 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2125
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2126 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2185
Query: 1377 RILALQQKKR 1386
IL +KR
Sbjct: 2186 NILKKANQKR 2195
Score = 180 (68.4 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 748 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 807
Query: 950 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 808 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 861
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 862 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 914
Score = 116 (45.9 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 500 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 559
++ E++ D E E T + + S QS+S++ +S +DE + E+ S+ +
Sbjct: 472 DEDEVEANSSDCEPEGATEAEEA---PQEDSSSQSDSAEEQSEDEDE-EHSEEEETSESS 527
Query: 560 RSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG---G 613
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLG 587
Query: 614 MKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHC 671
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN- 646
Query: 672 SGGILADDQGLGKTISTIALI 692
GILAD+ GLGKTI TI+L+
Sbjct: 647 --GILADEMGLGKTIQTISLL 665
Score = 64 (27.6 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 679 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 735
Query: 819 V 819
V
Sbjct: 736 V 736
Score = 58 (25.5 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 4 ADNAWLCGEVSAADEFADD-QGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDEL 62
A +A G S+ +E D+ + S D + G E E+ P SS D S S+DE
Sbjct: 457 ASDASAPGSGSSEEEDEDEVEANSSDCEPE-GATEAEEAPQEDSSSQSD-SAEEQSEDE- 513
Query: 63 VQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQK 99
++ SE +ES +S SQ + E++
Sbjct: 514 DEEHSEEEETSESSESEESESEESEESQSQSQADEEE 550
Score = 44 (20.5 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1158 LSQRQPGQEIPTDYSDSKLVEAP 1180
LS G+E+PT S+S +E P
Sbjct: 2644 LSVLPDGEEMPTCLSESNRLELP 2666
Score = 43 (20.2 bits), Expect = 7.0e-28, Sum P(4) = 7.0e-28
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 394 STVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI 453
S+ SDS E +++ + + + + +S +S S SQ+Q +EE +D
Sbjct: 500 SSQSDSAE--EQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFG 557
Query: 454 LESKRARFCQEI-CDGSSSRSPIDG 477
+E AR ++ DG S P G
Sbjct: 558 VEYLLARDEEQSEADGGSG-PPTPG 581
Score = 38 (18.4 bits), Expect = 2.3e-27, Sum P(4) = 2.3e-27
Identities = 18/92 (19%), Positives = 36/92 (39%)
Query: 226 TDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE 285
T+AE + +S+ S + +D+ +S T ++ + S S+
Sbjct: 489 TEAEEAPQEDSSSQSDSAE-EQSEDEDEEHSEEE---ETSESSESEESESEESEESQSQS 544
Query: 286 TATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 317
A + ++E+ +F E + A GG G
Sbjct: 545 QADEEEEEDDDFGVEYLLARDEEQSEADGGSG 576
Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 521 ASHLLKLSPESIQSNSSDCKSHV 543
A+ L L+P S QS +S S V
Sbjct: 1813 AAQTLALAPASTQSPASQASSLV 1835
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 248 (92.4 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 60/175 (34%), Positives = 98/175 (56%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 495 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 554
Query: 1301 DK--AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1356
+K A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHR
Sbjct: 555 EKKEAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHR 613
Query: 1357 IGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1410
IGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 614 IGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 668
Score = 187 (70.9 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 54/178 (30%), Positives = 92/178 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 314 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 373
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 374 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKVY 428
Query: 1007 VDFTDEERDF-YSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++ Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 429 LGLSKMQREWWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 481
Score = 91 (37.1 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 186 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 234
Score = 57 (25.1 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 248 MVLVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 304
Query: 819 VSME 822
V E
Sbjct: 305 VIKE 308
Score = 42 (19.8 bits), Expect = 4.1e-14, Sum P(5) = 4.1e-14
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 39 (18.8 bits), Expect = 3.3e-35, Sum P(5) = 3.3e-35
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 423 KDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKR 458
KD QS I +++ +EE E+L+ ES++
Sbjct: 141 KDDKQSLISAGEYFSYRHRRTE-QEEDEELLSESRK 175
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 312 (114.9 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 75/241 (31%), Positives = 133/241 (55%)
Query: 1170 DYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDS 1229
D + LV+ + G+ N + K E L ++ P N + +L+ NG + G
Sbjct: 1692 DCKEISLVKL-TMNGLITNETT-KELSESLPTVLPPSSNQIVLDNLKE--NGGLM--GGL 1745
Query: 1230 NDLHGGDTL------DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1283
N L G ++ +++D + + +K+GG + +++SQ+TKM+++LE +
Sbjct: 1746 NRLFGSTSIWMPSFSKSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIF 1805
Query: 1284 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1343
+Y RLDG+ + R V DF + P + ++S +A +G+N+ +A V+ D WN
Sbjct: 1806 RKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWN 1865
Query: 1344 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQ 1401
PT ++QA DRAHR+GQTRPV+V RL KNT+E++IL ++K ++ + A G+ E+ +
Sbjct: 1866 PTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPE 1925
Query: 1402 Q 1402
+
Sbjct: 1926 E 1926
Score = 136 (52.9 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 47/191 (24%), Positives = 84/191 (43%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
++ W +VLDEA +IK+ + + + R L+GTPIQN++ +L++ F+
Sbjct: 1287 RLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTF 1346
Query: 947 FAVYKSFCSMIKVPISKNPV-KG------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F + F I + + +G +L +LK MLRR K + + E +P
Sbjct: 1347 FDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDV-ENE----MPS 1401
Query: 1000 KVIMLKQVDFTDEERDFYSQLEINSRDQFKEY-AAAGTVKQNYVNILL-MLLRLRQACDH 1057
K + + T ++ Y I S E A +Q + L+ +++ R+ C+H
Sbjct: 1402 KTEVEVYCNLTHRQKKLYQS--IRSNISITELLGGASFSEQGSMKALMNFVMQFRKVCNH 1459
Query: 1058 PLLVKGFDSNS 1068
P K + S
Sbjct: 1460 PETFKRSECES 1470
Score = 78 (32.5 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+L L +Q ++W+V ++ GILAD+ GLGKTI +IA++
Sbjct: 1157 ILNADLKPYQLKGMTWIVNLYDQGIN---GILADEMGLGKTIQSIAVL 1201
Score = 57 (25.1 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 49/217 (22%), Positives = 82/217 (37%)
Query: 431 GLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY 490
G SP + S N ++ +D S+ + S SRSP+ + ++N NG++Q
Sbjct: 58 GRSPVMYSPN-----RDSSDDDSSSSRSGLYLSSSSSRSRSRSPLPPLN-NIN-NGNQQS 110
Query: 491 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC 550
+ N + + + S S+ S SN S K+ ++ P+I
Sbjct: 111 NNFINNKN-NNNNFNNINNNYNNNNGINSSNSN-----NSSNSSNKS--KNSNNNIPNIL 162
Query: 551 --ILEDISQPARSNQSLVLGKTLSMNRSACSNH-SVALGKPVVTSQHSSYSDYPGYPGVP 607
I + S + S++ L S S+ SN S + + + SS S YP
Sbjct: 163 PYISLNGSGSSSSSKQFSLPPLKSTTTSSSSNSTSSSSSRSSKSHSSSSSSSSSSYPIKS 222
Query: 608 LTG-LGGMKSKASDERLILQVAMQGISQPNAEASAPD 643
+ G +GG SK S G S ++ D
Sbjct: 223 IFGNIGGGSSKGSSSSSSRSSKSSGSSSSRSDRDKSD 259
Score = 52 (23.4 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-------DPCEL----AKFDVV 812
L+V P S L W E V + V+ Y G+ + + +P +L + F V+
Sbjct: 1215 LIVTPKSTLHNWKNEFAKFVPA---FKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVL 1271
Query: 813 ITTYSIV 819
IT+Y+++
Sbjct: 1272 ITSYNVI 1278
Score = 46 (21.3 bits), Expect = 1.7e-33, Sum P(6) = 1.7e-33
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 70 SNLQLQSEISGAESGGLGDSSSQ-LEP------TEQKCSPLQTCSASFSDWFNQNSGTCC 122
SN + G S L SS+Q L P ++ K S + S+S S NQ + +
Sbjct: 421 SNTLFNIKPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQGASSAI 480
Query: 123 PESVGI--SQFETPGCSTASS 141
S+ + S ++P + SS
Sbjct: 481 SSSISVLSSPKQSPSMKSMSS 501
Score = 43 (20.2 bits), Expect = 3.3e-33, Sum P(6) = 3.3e-33
Identities = 23/105 (21%), Positives = 36/105 (34%)
Query: 37 EEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPT 96
+ + + DR +S D R S+ S S + + + L SSS
Sbjct: 352 DRDSRSDRERSGRSDRESRGDSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQ 411
Query: 97 EQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASS 141
SP+ + F+ + GT P S P S +SS
Sbjct: 412 PSTTSPIMPSNTLFNI---KPIGTTSPHLSSSSNQGLPPISLSSS 453
Score = 43 (20.2 bits), Expect = 5.3e-33, Sum P(6) = 5.3e-33
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 587 KPV-VTSQHSSYSDYPGYPGVPLTGLGGMK--SKASDERLILQVAMQGISQPNAEASAPD 643
KP+ TS H S S G P + L+ K S S + QG S + S+
Sbjct: 428 KPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQGAS---SAISSSI 484
Query: 644 GVLAVP 649
VL+ P
Sbjct: 485 SVLSSP 490
Score = 42 (19.8 bits), Expect = 1.7e-33, Sum P(6) = 1.7e-33
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 343 LPIYGNSLSNITLGDGKRSAQPCTYSHSHS 372
+P+ GNS +++G+ +R++ Y +S++
Sbjct: 586 MPLSGNSFEPLSIGN-QRNSTDNLYDNSNN 614
Score = 40 (19.1 bits), Expect = 5.3e-33, Sum P(6) = 5.3e-33
Identities = 16/73 (21%), Positives = 26/73 (35%)
Query: 74 LQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFET 133
L+S + + S SSS+ + S + S F G S S +
Sbjct: 184 LKSTTTSSSSNSTSSSSSRSSKSHSSSSSSSSSSYPIKSIFGNIGGGSSKGSSSSSSRSS 243
Query: 134 PGCSTASSFSEGD 146
++SS S+ D
Sbjct: 244 KSSGSSSSRSDRD 256
Score = 40 (19.1 bits), Expect = 6.7e-33, Sum P(6) = 6.7e-33
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 22 DQGLSIDMDTLLGILEEEKQPDRVKS-SPGDLSLRNLSQDELVQDVGSHSN 71
+QG S + + + +L KQ +KS S + +L L+ L Q S SN
Sbjct: 473 NQGASSAISSSISVLSSPKQSPSMKSMSSSNPALPTLAP--LTQLSSSSSN 521
Score = 39 (18.8 bits), Expect = 3.3e-33, Sum P(6) = 3.3e-33
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 177 IDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 211
+ + VD +S + +RYG +S ++ SS
Sbjct: 739 VKKKMVDPKYNSSSSRSKDRYGSSSSSKSSKYNSS 773
Score = 39 (18.8 bits), Expect = 6.7e-33, Sum P(6) = 6.7e-33
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 345 IYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGND 387
I+GN + G S++ S S SSR+ + +D +D
Sbjct: 223 IFGNIGGGSSKGSSSSSSRSSKSSGSSSSRSDRDKSDRDSRSD 265
Score = 37 (18.1 bits), Expect = 5.3e-33, Sum P(6) = 5.3e-33
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 499 LNKKELDGVKEDMEAEIKTRSMASHLLKLSP 529
LN+ E D D++ T +++SH+ K SP
Sbjct: 546 LNEHESDS---DVDFST-TPTLSSHISKYSP 572
Score = 37 (18.1 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 1146 SSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPS 1181
SS S ++LNN+ + P S S PS
Sbjct: 378 SSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPS 413
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 293 (108.2 bits), Expect = 8.6e-35, Sum P(5) = 8.6e-35
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1094 ITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1153
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1154 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1213
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1214 KQVTVYRLICKGTIEERILQRAKEKSEI 1241
Score = 151 (58.2 bits), Expect = 8.6e-35, Sum P(5) = 8.6e-35
Identities = 54/217 (24%), Positives = 104/217 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 639 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 698
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 699 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 753
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 754 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 813
Query: 1057 HPLLVKGFDSNSLLRSSV---EMAKKLPQERQMYLLN 1090
HP L + ++ S S+ E++K + + Q+ + N
Sbjct: 814 HPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFN 850
Score = 75 (31.5 bits), Expect = 8.6e-35, Sum P(5) = 8.6e-35
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 523 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 565
Score = 67 (28.6 bits), Expect = 8.6e-35, Sum P(5) = 8.6e-35
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPC---ELAKFDVVITTYSI 818
L++ P S L W +E V VL Y G+ R K + A F VVIT+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQL 629
Query: 819 VSMEV 823
V +V
Sbjct: 630 VVQDV 634
Score = 42 (19.8 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSL 1202
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
Score = 40 (19.1 bits), Expect = 8.6e-35, Sum P(5) = 8.6e-35
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 58 SQDELVQDVGSHSNLQLQSEISGAESGGL 86
S D L+Q N L E SGA S GL
Sbjct: 65 SGDPLIQVKEEPPN-SLLGETSGASSSGL 92
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 240 (89.5 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 48/140 (34%), Positives = 82/140 (58%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L ++ + Y RLDG++ R +AV FN P + V++++
Sbjct: 1738 RVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLT 1797
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL + +E++I+
Sbjct: 1798 THVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIM 1857
Query: 1380 ALQQKKREMVASAFGEDETG 1399
LQ+ K + ++ + G
Sbjct: 1858 GLQRFKMNVASTVVNQQNAG 1877
Score = 214 (80.4 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 68/196 (34%), Positives = 94/196 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W VLDE IKN R ++ +A LR+ R LSGTPIQN + +L+S F FL
Sbjct: 1483 LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMP 1542
Query: 945 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 992
K+F PI SK +G L+A+ K + MLRR K +L
Sbjct: 1543 GFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVL--- 1599
Query: 993 PIINLPPKVIMLKQVDFTDEER----DFYSQLEINSR---DQFKEYAAAGTVKQNYVNIL 1045
+LPPK+I D +D +R DF SQL IN D+ ++ K +I
Sbjct: 1600 --ADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIF 1657
Query: 1046 LMLLRLRQACDHPLLV 1061
L +R+ C+HP L+
Sbjct: 1658 QALQYMRKLCNHPALI 1673
Score = 90 (36.7 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 718 EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPA-AGTLVVCPTSVLRQWA 776
E +GI + + L K C V + + + F E + A +L+VCP+++ W
Sbjct: 1376 ELHGILCDDMGLGKTLQTICIVASDHYNRQKL-FEESGSPKFAHVPSLIVCPSTLAGHWQ 1434
Query: 777 EELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVSMEV 823
+EL T L V Y G + R K ++ K DVV+T+Y I +V
Sbjct: 1435 QELS---TYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDV 1480
Score = 89 (36.4 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 621 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 680
ER L+ Q ++ EA + ++ L ++Q+ ++W+ LH GIL DD
Sbjct: 1332 ERKFLE---QMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH---GILCDDM 1385
Query: 681 GLGKTISTIALILKE 695
GLGKT+ TI ++ +
Sbjct: 1386 GLGKTLQTICIVASD 1400
Score = 45 (20.9 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSN 1067
D T ++ + Y L DQF A ++NY N++ L +R C+ LL D
Sbjct: 847 DLTIQKDELYHLL----CDQF-----ATVPRENYANLVSQLHVVRAQCN-ALLNTFLDVG 896
Query: 1068 SLLRSSV 1074
L RS +
Sbjct: 897 RLSRSKI 903
Score = 43 (20.2 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 425 SGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNL 484
S QS + +S +L S ++V +K E E L S ++ + I D + L+ L
Sbjct: 113 SSQSQVVVSSNLTSNSEV--SKLEEERLSTRS-HSQEIKPIVDFGPDEET--AKELNTEL 167
Query: 485 NG-------SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSS 537
G S + F A KK L D + + + ++H L+ +++S
Sbjct: 168 KGKFENSLLSFESFDIANVLKAGKKLLGSASRDYD--VNPANYSTHYLQ-QLSNLKSRLD 224
Query: 538 DCKSHVDDEPDICILEDISQPARSN 562
++DD I+ D+ SN
Sbjct: 225 LAGEYLDDS----IMNDLGDNVGSN 245
Score = 40 (19.1 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 216 NLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSS 274
NLC YV + T+ + H+ H S SDD+ ++ D + D S
Sbjct: 1045 NLCAYVCMDTTETPIF-HDSGKNGILSLH-SIGTSDDNDEQVSGKLVDDSDDVSNDRKS 1101
Score = 40 (19.1 bits), Expect = 1.3e-33, Sum P(5) = 1.3e-33
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 213 PEGNLCTYVDVPYTDAEV 230
P+G+ C VD P + +V
Sbjct: 762 PKGSFCFSVDEPMLNGDV 779
Score = 39 (18.8 bits), Expect = 6.3e-34, Sum P(5) = 6.3e-34
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 699 SFRTEDDNKRQLETLNLDEEDN 720
S T DDN Q+ +D+ D+
Sbjct: 1073 SIGTSDDNDEQVSGKLVDDSDD 1094
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 1173 DSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 1232
D+ L+ PS G Y S + + L+ R T H + GS C D L
Sbjct: 722 DTTLIVKPS--GQPYAPSTSRERNNNISELSNSR----TKHRAKDDPKGSFCFSVDEPML 775
Query: 1233 HG 1234
+G
Sbjct: 776 NG 777
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 242 (90.2 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2043 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2102
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2103 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2162
Query: 1377 RILALQQKKR 1386
IL +KR
Sbjct: 2163 NILKKANQKR 2172
Score = 180 (68.4 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 750 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 809
Query: 950 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 810 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 863
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 864 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 916
Score = 118 (46.6 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 52/206 (25%), Positives = 89/206 (43%)
Query: 500 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 559
+++E++ D E E +TR + + + E S S + H +DE D E++S +
Sbjct: 470 DEEEVEANSSDCELE-ETRDVE----EAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSS 524
Query: 560 RSNQSLVLGKTLSMNRSACSNHSVA--------LGKPVVTSQHSSYSDYPGYPGVPLTGL 611
+S +S + ++S G + ++ S+ G G P G
Sbjct: 525 QSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGVEYLLARDDERSEVDGGSGPPTPGP 584
Query: 612 G---GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKET 666
G K + +D + + +G + + P +L LR +Q I L W+V
Sbjct: 585 TTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYE 644
Query: 667 SSLHCSGGILADDQGLGKTISTIALI 692
L+ GILAD+ GLGKTI TI+L+
Sbjct: 645 KKLN---GILADEMGLGKTIQTISLL 667
Score = 64 (27.6 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 681 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 737
Query: 819 V 819
V
Sbjct: 738 V 738
Score = 44 (20.5 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 11 GEVSAADEFAD--DQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGS 68
GEV A E ++ +G + M+ LL D S+PG + S+DE + S
Sbjct: 426 GEVDHAMELSELAREG-ELSMEELLQQYAGAYAYDA--SAPGSGN----SEDEEEVEANS 478
Query: 69 HSNLQLQSEISGAESGGLGDSSSQLEPTEQ 98
S+ +L+ E E DSSSQ + E+
Sbjct: 479 -SDCELE-ETRDVEEAAQEDSSSQSDSAEE 506
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 346 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFA-KDEGND-DLFPCWSTVSDSV 400
Y + LS N L K + PC S S +S V DE D D P D
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEAIDGDFQPQEEEEEDDE 302
Query: 401 EPID 404
E I+
Sbjct: 303 ETIE 306
Score = 38 (18.4 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 757 GRPA-AGTLVVCPTSVL 772
G P + TLV PTSVL
Sbjct: 1631 GAPLPSSTLVSAPTSVL 1647
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 197 (74.4 bits), Expect = 2.0e-34, Sum P(5) = 2.0e-34
Identities = 47/127 (37%), Positives = 68/127 (53%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1322
K +VFSQW +LD+L S + + I + R DG +++ +K F + V+ + ++
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSLQVLTLHARS 1261
Query: 1323 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382
S GL + A HV + + N E QAI R HRIGQTRP V V++TVE IL L
Sbjct: 1262 QSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNLS 1321
Query: 1383 QKKREMV 1389
K E +
Sbjct: 1322 LTKHEQL 1328
Score = 181 (68.8 bits), Expect = 2.0e-34, Sum P(5) = 2.0e-34
Identities = 53/187 (28%), Positives = 92/187 (49%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL V W+R+ +DEAQ ++ ++ VA+ + + W +SGTP+++ +DDL+ LR
Sbjct: 415 PLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLR 474
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP--KV 1001
Y P +YK M ++ I K V+ + L +++ R +K D E + LPP ++
Sbjct: 475 YSPMYLYKKQAWM-QI-IEKKRVREFCDL---FGSLVCRHSKQ---DVEEELKLPPQHRI 526
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
M ++ +E Y L + + + ++ L+RLRQAC HP +
Sbjct: 527 CMTTRLSVVEETN--YQDLLSEAAKSLHFFKDRNLDLCDEESMRRWLVRLRQACCHPQV- 583
Query: 1062 KGFDSNS 1068
GF + S
Sbjct: 584 -GFGNKS 589
Score = 94 (38.1 bits), Expect = 2.0e-34, Sum P(5) = 2.0e-34
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 1082 QERQMYLLNCLE------ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1135
+ R+ YL N E S IC IC D + ++ CGH++C+ C+ E + CP
Sbjct: 1069 ESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCL-EAWLKHSSSCP 1127
Query: 1136 TRNCKIRLSLSSVF 1149
CK +L+ ++ +
Sbjct: 1128 M--CKTKLNKNNAY 1139
Score = 76 (31.8 bits), Expect = 2.0e-34, Sum P(5) = 2.0e-34
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 673 GGILADDQGLGKTISTIALILKERPPSFRTE 703
GGILAD+ G+GKT+ + L+L + P T+
Sbjct: 285 GGILADEMGMGKTLEVLGLVLHHQLPISLTD 315
Score = 76 (31.8 bits), Expect = 2.0e-34, Sum P(5) = 2.0e-34
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF----DVVITTYSI 818
TL++ P+++L QW E+ V S L V Y G R + + AK D+V+T+YS
Sbjct: 333 TLIITPSTILDQWLSEIDLHVPS---LKVFHYQGI-RKSNGLKSAKIFLDCDIVVTSYSD 388
Query: 819 VSMEV 823
+ E+
Sbjct: 389 LRFEL 393
Score = 40 (19.1 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSS--DCKSHVDDEPDICILEDISQPA 559
KEL+ KE + IK R HL+KL +S+ + + + ++ + +I D+ +
Sbjct: 782 KELNDQKEVL---IKFRDRLIHLMKLPLLDQESDPTGDEYEESLNAQSEISYCIDVYRQM 838
Query: 560 RSNQSLVLGKTLS 572
S++ + T++
Sbjct: 839 LSDRVAAVSGTIN 851
Score = 38 (18.4 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 327 IDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKR 360
I+Y ++ DS P+ SL+N D K+
Sbjct: 966 IEYYKQLQEISDSLMPPPVSNISLNNYVKDDEKK 999
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 242 (90.2 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2055 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2114
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2115 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2174
Query: 1377 RILALQQKKR 1386
IL +KR
Sbjct: 2175 NILKKANQKR 2184
Score = 180 (68.4 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 747 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 806
Query: 950 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 807 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 860
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 861 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 913
Score = 117 (46.2 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 54/200 (27%), Positives = 90/200 (45%)
Query: 501 KKELDGVKEDM-EAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 559
++E D V+ D E+E + + A S QS+S++ +S D+E + E+ S+ +
Sbjct: 470 EEEEDEVEADSSESEPEGAAEAEEAPH-EDSSSQSDSAEEQSE-DEEDEHSEEEETSRSS 527
Query: 560 RSNQSLVLGKTLSMNRSACSNHSVA--LGKPVVTSQHSSYSDYPGYPGVPLTGLG---GM 614
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERSEADGGSGPPTPGPTTTLGP 587
Query: 615 KSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHCS 672
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 KKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN-- 645
Query: 673 GGILADDQGLGKTISTIALI 692
GILAD+ GLGKTI TI+L+
Sbjct: 646 -GILADEMGLGKTIQTISLL 664
Score = 64 (27.6 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 678 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 734
Query: 819 V 819
V
Sbjct: 735 V 735
Score = 55 (24.4 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 25/96 (26%), Positives = 37/96 (38%)
Query: 4 ADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELV 63
A +A G S+ +E D+ G E E+ P SS D S S+DE
Sbjct: 457 ASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSD-SAEEQSEDE-E 514
Query: 64 QDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQK 99
+ SE +ES +S SQ + E++
Sbjct: 515 DEHSEEEETSRSSESEESESEESEESQSQSQADEEE 550
Score = 41 (19.5 bits), Expect = 6.0e-14, Sum P(5) = 6.0e-14
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 1158 LSQRQPGQEIPTDYSDSKLVEAP 1180
LS G+E+P S+S +E P
Sbjct: 2634 LSVLPDGEEVPACLSESSKLELP 2656
Score = 39 (18.8 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 19/63 (30%), Positives = 23/63 (36%)
Query: 346 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKD-EGNDDLFPCWSTVSDSVE 401
Y + LS N L K + PC S S +S V D E D F D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRMDDEAIDGDFQPQEEEEDDEE 302
Query: 402 PID 404
I+
Sbjct: 303 TIE 305
Score = 38 (18.4 bits), Expect = 2.2e-27, Sum P(4) = 2.2e-27
Identities = 25/117 (21%), Positives = 50/117 (42%)
Query: 12 EVSAADEFADDQGLSIDMDTLL-GILEEEKQPDRVKSSPGDLSLRNLSQD---ELVQDV- 66
E +A ++ A+D+ +I + L G ++ + + + G+LS+ L Q D
Sbjct: 402 EFTANEDEAEDEEDTIAAEEQLEGEVDPAVELNELAREGGELSVEELLQQYAGAYASDAS 461
Query: 67 --GSHSNLQLQS---EISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNS 118
GS S+ + + E +ES G + ++ P E S + D +++S
Sbjct: 462 APGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEEDEHS 518
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 272 (100.8 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 56/149 (37%), Positives = 96/149 (64%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
++S+K G++ ++FSQ+T MLD+LE L+ +Y RLDG+ + R + FNT ++
Sbjct: 791 LNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDI 850
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
V ++S +A LG+N+ +A V+L D+ NP + QA R HR+GQT+ V V++L K++
Sbjct: 851 FVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDS 910
Query: 1374 VEDRILALQQKK----REMVASAFGEDET 1398
+ED +L + ++K +EM A+ GE++T
Sbjct: 911 IEDTMLRIGERKLKLEQEMTATQDGEEDT 939
Score = 131 (51.2 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 49/197 (24%), Positives = 93/197 (47%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS- 952
V DE +KN + R + AK R L+GTP+QN + +L S F+ + F+ S
Sbjct: 558 VFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQ 617
Query: 953 FCSMIKVPISKNPVKGYKK-----LQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
M + S+ +++ + ++K +LRR K +L LP K ++
Sbjct: 618 IAKMFSMKSSEEQ-SSFERDRITHAKLIMKPFILRRVKSEVLK-----QLPAKEEQVEFC 671
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSN 1067
++ +++ YS L + K +++ G K+ N+++ +LR+ +HPLL + F +
Sbjct: 672 AMSERQQELYSAL----LHKLK-HSSNGE-KRELTNVMM---QLRKMSNHPLLHRQFYTT 722
Query: 1068 SLLRSSVEMAKKLPQER 1084
L++ ++ K P R
Sbjct: 723 EKLKAMSKLMLKEPSHR 739
Score = 87 (35.7 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 613 GMKSKASDERL-ILQVAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 670
G+ SK + + ++Q Q + + + P+ + + L+ +Q I L+W+V + L
Sbjct: 390 GLMSKCEEISVKLIQDVTQVMDKGPGSMTQPEILSSTFQLKPYQLIGLNWLVLLHQNKL- 448
Query: 671 CSGGILADDQGLGKTISTIALI 692
GILAD+ GLGKTI I+ +
Sbjct: 449 --SGILADEMGLGKTIQAISFL 468
Score = 64 (27.6 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 817
L+ P S L W EL S VLVY+GS+ R + ++ +++++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWCPS---FKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 818 I 818
+
Sbjct: 538 L 538
Score = 53 (23.7 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 11 GEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGD-LSLRNLSQDELVQDVGSH 69
G VSAAD+ ++ S D + +L L+ K P K+ D L + D+ ++ +
Sbjct: 159 GRVSAADDSEEEGQRSKDQERMLRKLQR-KFPHLNKNELRDVLQEHDWLIDDALETLRMF 217
Query: 70 SNLQLQSEISGAES 83
S+L ++SE +++
Sbjct: 218 SDLVVESEDDSSQT 231
Score = 48 (22.0 bits), Expect = 1.0e-33, Sum P(5) = 1.0e-33
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 510 DMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 561
D ++EI SM + KL P ++ SS + V DE + +++ +P S
Sbjct: 47 DSDSEISGSSMMP-VRKLRPRKRKAASSADEYSVSDEEEEIVVKTKRRPTHS 97
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 229 (85.7 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 55/153 (35%), Positives = 88/153 (57%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1294
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1295 ----MSVFARDK--AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346
+ ++ R + A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 ENGFLQIYFRRRREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 4.7e-34, Sum P(5) = 4.7e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 227 (85.0 bits), Expect = 7.0e-34, Sum P(5) = 7.0e-34
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1294
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1295 ------MSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346
+ + + +A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 EDKFLEVELLGQREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 7.0e-34, Sum P(5) = 7.0e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 7.0e-34, Sum P(5) = 7.0e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 7.0e-34, Sum P(5) = 7.0e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 7.0e-34, Sum P(5) = 7.0e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 227 (85.0 bits), Expect = 7.7e-34, Sum P(5) = 7.7e-34
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1294
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1295 ------MSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346
+ + + +A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 EDKFLEVELLGQREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 7.7e-34, Sum P(5) = 7.7e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 7.7e-34, Sum P(5) = 7.7e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 7.7e-34, Sum P(5) = 7.7e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 4.8e-15, Sum P(5) = 4.8e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 7.7e-34, Sum P(5) = 7.7e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 241 (89.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 822 E 822
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 241 (89.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 822 E 822
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 241 (89.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 822 E 822
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 8.7e-34, Sum P(5) = 8.7e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 230 (86.0 bits), Expect = 9.2e-34, Sum P(5) = 9.2e-34
Identities = 74/238 (31%), Positives = 119/238 (50%)
Query: 1188 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 1247
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 419 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 468
Query: 1248 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD------ 1301
+A + IK G + ++FSQ T++LD+LE +Y RLDG R+
Sbjct: 469 VALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHK 528
Query: 1302 ------KAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
+A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 529 HNLFSTEAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 587
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1410
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 588 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 645
Score = 192 (72.6 bits), Expect = 9.2e-34, Sum P(5) = 9.2e-34
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 282 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 341
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 342 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 396
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 397 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 448
Score = 91 (37.1 bits), Expect = 9.2e-34, Sum P(5) = 9.2e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 154 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 202
Score = 58 (25.5 bits), Expect = 9.2e-34, Sum P(5) = 9.2e-34
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 216 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 819 VSME 822
V E
Sbjct: 273 VIKE 276
Score = 41 (19.5 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DN++ E E
Sbjct: 851 ANEKYGRDDIDNVAREVE 868
Score = 37 (18.1 bits), Expect = 9.2e-34, Sum P(5) = 9.2e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 117 SLISVGDYRHRRTEQEEDEELLSESRK 143
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 227 (85.0 bits), Expect = 9.9e-34, Sum P(5) = 9.9e-34
Identities = 74/238 (31%), Positives = 118/238 (49%)
Query: 1188 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 1247
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 418 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 467
Query: 1248 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG-TMSVFARDK---- 1302
+ + +K G + ++FSQ T++LD+LE +Y RLDG T DK
Sbjct: 468 VVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEV 527
Query: 1303 -------AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 528 EFLGQREAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 586
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1410
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 587 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 644
Score = 192 (72.6 bits), Expect = 9.9e-34, Sum P(5) = 9.9e-34
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 281 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 340
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 341 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 395
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 396 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 447
Score = 91 (37.1 bits), Expect = 9.9e-34, Sum P(5) = 9.9e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 153 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 201
Score = 59 (25.8 bits), Expect = 9.9e-34, Sum P(5) = 9.9e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 819 VSME 822
V E
Sbjct: 272 VIKE 275
Score = 42 (19.8 bits), Expect = 6.5e-15, Sum P(5) = 6.5e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 850 ANEKYGRDDIDNIAREVE 867
Score = 38 (18.4 bits), Expect = 9.9e-34, Sum P(5) = 9.9e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 116 SLISAGDYRHRRTEQEEDEELLSESRK 142
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 227 (85.0 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 74/238 (31%), Positives = 118/238 (49%)
Query: 1188 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 1247
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 439 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 488
Query: 1248 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG-TMSVFARDK---- 1302
+ + +K G + ++FSQ T++LD+LE +Y RLDG T DK
Sbjct: 489 VVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEV 548
Query: 1303 -------AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 549 EFLGQREAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 607
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1410
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 608 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 665
Score = 192 (72.6 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 362 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 416
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 417 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 468
Score = 91 (37.1 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 174 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 59 (25.8 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 819 VSME 822
V E
Sbjct: 293 VIKE 296
Score = 42 (19.8 bits), Expect = 8.8e-15, Sum P(5) = 8.8e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 871 ANEKYGRDDIDNIAREVE 888
Score = 38 (18.4 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 137 SLISAGDYRHRRTEQEEDEELLSESRK 163
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 239 (89.2 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 457 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 508
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 509 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 568
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 569 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 626
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 627 -----DSIVIQQGRLVDQNLN 642
Score = 193 (73.0 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 412
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 413 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 464
Score = 79 (32.9 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 822 E 822
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 523 HLLKLSPESIQSN-SSDCKSHVDDEPDICILEDISQPARSNQSLVL 567
H++ L P+S N S+ K V +C++ D Q A + ++L
Sbjct: 231 HMV-LVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLL 275
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 239 (89.2 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 457 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 508
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 509 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 568
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 569 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 626
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 627 -----DSIVIQQGRLVDQNLN 642
Score = 193 (73.0 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 412
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 413 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 464
Score = 79 (32.9 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 822 E 822
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 239 (89.2 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 822 E 822
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 470
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 242 (90.2 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 68/204 (33%), Positives = 105/204 (51%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 443 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 494
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNM 1329
++LD+LE + +Y RLDG R ++ +N P S V ++S +A LG+N+
Sbjct: 495 RVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNE-PGSSKFVFMLSTRAGGLGINL 553
Query: 1330 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 554 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL- 612
Query: 1390 ASAFGEDETGGQQTRLTVDDLNYL 1413
D QQ RL +LN L
Sbjct: 613 ------DSIVIQQGRLVDQNLNKL 630
Score = 190 (71.9 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 53/177 (29%), Positives = 91/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F + F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 344 FNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 398
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 399 VGLSKMQREWYTRILMKDIDILN---SAG--KLDKMRLLNILMQLRKCCNHPYLFDG 450
Score = 79 (32.9 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 49 (22.3 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 821
+V+ P S L W E + V + ++ ++ ++ +D ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK 277
Query: 822 E 822
E
Sbjct: 278 E 278
Score = 46 (21.3 bits), Expect = 3.0e-13, Sum P(4) = 3.0e-13
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1282 KDSSIQYRRLDGTMSVFARDKAVK 1305
K SS Q R++DGT R K +K
Sbjct: 1014 KPSSAQKRKMDGTPDGRGRKKKLK 1037
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 231 (86.4 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 53/157 (33%), Positives = 89/157 (56%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E V
Sbjct: 502 LKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFV 561
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
+++ +A LG+N+V A V+L D WNP + QA+DRAHRIGQ + V V R +N +E
Sbjct: 562 FLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIE 621
Query: 1376 DRILALQQKKREMVASAFGEDETGGQQTRL--TVDDL 1410
++++ +K + + TG + L + DDL
Sbjct: 622 EKVIERAAQKLRLDQLVI-QQGTGKKTASLGNSKDDL 657
Score = 172 (65.6 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 51/180 (28%), Positives = 90/180 (50%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W +V+DEA IKN ++ +++ +K R ++GTP+QN + +L++ FL
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLP 360
Query: 945 DPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 1003
D F + F + S+ + ++L +VL +LRR K D E +L PK+
Sbjct: 361 DIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKA---DVEK--SLLPKIET 415
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V TD + +Y L D A G ++ +L ++++LR+ C+HP L +G
Sbjct: 416 NVYVGMTDMQIQWYKSLLEKDIDAVN--GAVGK-REGKTRLLNIVMQLRKCCNHPYLFEG 472
Score = 82 (33.9 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+ +P V + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 173 SESPSFVKSGKLRDYQVQGLNWLISLHENKL---SGILADEMGLGKTLQTISFL 223
Score = 77 (32.2 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 751 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL---- 806
+V+Q +G P L++ P S L W E K T +++VLV HG T+
Sbjct: 228 YVKQIEG-PF---LIIVPKSTLDNWRREFL-KWTP--NVNVLVLHGDKDTRADIVRNIIL 280
Query: 807 -AKFDVVITTYSIVSME 822
A+FDV+IT+Y +V E
Sbjct: 281 EARFDVLITSYEMVIRE 297
Score = 38 (18.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 107 SASFSDWFNQNS 118
S F +WF QN+
Sbjct: 366 SELFDEWFEQNN 377
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 230 (86.0 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 42/118 (35%), Positives = 75/118 (63%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G + ++F+Q +ML++LE +K++ Y ++DGT ++ +R + FN ++ V I++
Sbjct: 833 GHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILTT 892
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 893 RVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKI 950
Score = 161 (61.7 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
+ + W V+LDE I+N V AC R R+ LSG+P+QN + +L+S F F+
Sbjct: 612 IQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFP 671
Query: 945 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 992
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 672 GKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKA---DVK 728
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
++LP K + T+++R Y Q ++S++ ++ + + + L+ LR
Sbjct: 729 ANLSLPDKNEQVLFCRLTEDQRQVY-QTFLDSKEVYQ-------ILNGDMQVFSGLIALR 780
Query: 1053 QACDHPLLVKG 1063
+ C+HP L G
Sbjct: 781 KICNHPDLFTG 791
Score = 96 (38.9 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + WM + LHC +GGIL D+ GLGKTI IA + +
Sbjct: 478 GFLWKKLFKYQQTGVRWMWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLK 532
Query: 702 TEDDNKR 708
T N R
Sbjct: 533 TRGSNYR 539
Score = 70 (29.7 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GSSRTKD----PCELAKFDVVITTY 816
T++VCP +V+ QW +E T V V H GS +K P +A ++IT+Y
Sbjct: 546 TVIVCPATVMHQWVKEFH---TWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSY 602
Query: 817 SIV 819
S +
Sbjct: 603 SYI 605
Score = 55 (24.4 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 441 QVVHAKEEHEDLILESKRARFCQEICDG-SSSRSPIDGRHLSLNLNGSRQYFPYAQPSTL 499
QV A +E +++ + + + D S S + +H++ L Q P+A S
Sbjct: 100 QVDRAIQEANQAAAKAEAQKEYESVLDDVRSCTSAL--KHINKILE---QLTPHAASSKD 154
Query: 500 NKKELDGVK---EDMEAEIKT-RSMASHLLKL-SPESIQSNSSDCKSHVDDEPDICILED 554
++++ VK E+ E ++K R+ L L E IQ ++ D+EP L
Sbjct: 155 ISRKIESVKRQKENKEKQLKKIRAKQKRLQALLDGEDIQKLEAELLIEDDEEPGPSTLGS 214
Query: 555 ISQPARSNQ 563
+ PA+ ++
Sbjct: 215 MLMPAQESE 223
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 293 (108.2 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1100 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1159
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1160 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1219
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1220 KQVTVYRLICKGTIEERILQRAKEKSEI 1247
Score = 151 (58.2 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 54/217 (24%), Positives = 104/217 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 645 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 704
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 705 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 759
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 760 KIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 819
Query: 1057 HPLLVKGFDSNSLLRSSV---EMAKKLPQERQMYLLN 1090
HP L + ++ S S+ E++K + + Q+ + N
Sbjct: 820 HPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFN 856
Score = 75 (31.5 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 523 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 565
Score = 52 (23.4 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 629
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 630 ITSYQLVVQDV 640
Score = 44 (20.5 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 985
YS YDPF Y+ ++ P K K KKL+A LK + +R +
Sbjct: 188 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEDKKLKAKLKKVKKKRRR 233
Score = 42 (19.8 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSL 1202
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
Score = 40 (19.1 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 58 SQDELVQDVGSHSNLQLQSEISGAESGGL 86
S D L+Q N L E SGA S GL
Sbjct: 65 SGDPLIQVKEEPPN-SLLGETSGASSSGL 92
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 242 (90.2 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2055 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2114
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2115 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2174
Query: 1377 RILALQQKKR 1386
IL +KR
Sbjct: 2175 NILKKANQKR 2184
Score = 180 (68.4 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 799
Query: 950 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 800 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 853
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 854 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 906
Score = 103 (41.3 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 45/168 (26%), Positives = 74/168 (44%)
Query: 531 SIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVA--LGKP 588
S QS+S + +S D+E + E+ S + S +S + ++S G
Sbjct: 494 SSQSDSVEDRSE-DEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEEDDDFGVE 552
Query: 589 VVTSQHSSYSDYPGYPGVPLTGLG--GMKSKASDERLILQ-VAMQGISQPNAEASAPDGV 645
+ ++ S+ G P G G K + +D + + +G + + P +
Sbjct: 553 YLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 612
Query: 646 LAVPLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L LR +Q I L W+V L+ GILAD+ GLGKTI TI+L+
Sbjct: 613 LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
Score = 64 (27.6 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 727
Query: 819 V 819
V
Sbjct: 728 V 728
Score = 42 (19.8 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 17/62 (27%), Positives = 23/62 (37%)
Query: 346 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 402
Y + LS N L K + PC S S +S D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLTSSKAGSSPCLGSSSAASSPPPPASRLDDEDGDFQPQEDEEEDDEET 302
Query: 403 ID 404
I+
Sbjct: 303 IE 304
Score = 41 (19.5 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 580 NHSVALG-KPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAE 638
N +VA PV+ + S +P P P + + AS A Q ++ P A
Sbjct: 1538 NSTVAPACSPVLVPASALASPFPSAPN-PAPAQASLLAPASS-------ASQALATPLAP 1589
Query: 639 ASAPDGVLAVP 649
+AP + P
Sbjct: 1590 MAAPQTAILAP 1600
Score = 40 (19.1 bits), Expect = 1.4e-27, Sum P(4) = 1.4e-27
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 703 EDDNKRQLETLNLDEEDNG----IQVNGLDLVKQESD 735
ED+ + ET+ ++E+ G Q ++L+++E +
Sbjct: 293 EDEEEDDEETIEVEEQQEGNDAEAQRREIELLRREGE 329
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(5) = 1.2e-26
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 530 ESIQSNSSDCKSHVDDEPDICILEDISQPARS 561
+ + +NSSDC+ E + ED S + S
Sbjct: 468 DEVDANSSDCEPEGPVEAEEPPQEDSSSQSDS 499
Score = 38 (18.4 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 521 ASHLLKLSPESIQSNSSDCKSHV 543
A+ L L+P S QS +S S V
Sbjct: 1802 AAQTLALAPASTQSPASQASSLV 1824
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 572 SMNRSACSNHSVALGKPVVTSQHSSYSDYPGYP 604
S+ S S + AL + T+ S S PG+P
Sbjct: 1492 SLAPSGASPSASALTLGLATAPSLSSSQTPGHP 1524
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 249 (92.7 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 59/155 (38%), Positives = 85/155 (54%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K+ G + ++F+Q TKMLD+LEA L Y RLDG+ V R ++ FN +
Sbjct: 1670 LKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCF 1729
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + T+E
Sbjct: 1730 ILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEV 1789
Query: 1377 RILALQQKKREMVASAF-GEDETGGQQTRLTVDDL 1410
IL +KR + A G + T T+ DL
Sbjct: 1790 NILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDL 1824
Score = 158 (60.7 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 49/177 (27%), Positives = 90/177 (50%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W ++LDEAQ+IKN ++Q + +RR L+GTP+QN + +L+S FL F+
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSS 1095
Query: 950 YKSFCSMIKVPISKNPVKG---YK-----KLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
++ F P++ ++G Y +L V++ +LRR K + E +P K
Sbjct: 1096 HREFKEWFSNPMT-GMIEGNMEYNETLITRLHKVIRPFLLRRLKKEV---EK--QMPKKY 1149
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 1058
+ ++ +R Y + SR + +E G N ++++ +L++LR+ C+HP
Sbjct: 1150 EHVITCRLSNRQRYLYE--DFMSRAKTRETLQTG----NLLSVINVLMQLRKVCNHP 1200
Score = 110 (43.8 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 74/330 (22%), Positives = 130/330 (39%)
Query: 372 SSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIG 431
S + ++ K E +DD P S D E I +A + + + K+S F
Sbjct: 643 SLNSSRLTSPKRESDDDFRP-ESGSEDDEETIAKAEEDAADVKEEVTALA-KESEMDF-- 698
Query: 432 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYF 491
L N + E+ D +++ +++ + S S + + S + +
Sbjct: 699 --DDFL--NDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQ 754
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICI 551
A+ +KKE+D ++ D + ++ + +A + + P + + +D + D
Sbjct: 755 EEAEQEIDHKKEIDELEADNDLSVE-QLLAKYKSEQPPSPKRRKLAPRDPELDSDDDSTA 813
Query: 552 LEDI--SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 609
++ S+ A + L T+ + G + + + S G
Sbjct: 814 VDSTEESEDAATEDEEDLS-TVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGST--A 870
Query: 610 GLGGMKSKASDERLILQVAMQGISQPNAEA-SAPDGVLAVP-LLRH-----QRIALSWMV 662
G G K D+ L A+ QP S+ + V VP LL+H Q I L W+V
Sbjct: 871 GASGNK----DDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLV 926
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALI 692
L+ GILAD+ GLGKTI TIAL+
Sbjct: 927 TMNERKLN---GILADEMGLGKTIQTIALL 953
Score = 62 (26.9 bits), Expect = 4.7e-33, Sum P(4) = 4.7e-33
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L+V P+SV+ W E+ K G +L Y+GS + + + F V IT+Y +
Sbjct: 967 LIVVPSSVMLNW--EMEFKKWCPG-FKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKL 1023
Query: 819 V 819
V
Sbjct: 1024 V 1024
Score = 41 (19.5 bits), Expect = 9.3e-13, Sum P(3) = 9.3e-13
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 55 RNLSQDELVQDVGSH--SNLQLQSEISG 80
+ L +D +V+D+ +H S +Q QS +G
Sbjct: 1452 QQLIRDPIVKDLATHVKSTVQKQSIANG 1479
Score = 40 (19.1 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 18/86 (20%), Positives = 33/86 (38%)
Query: 228 AEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETA 287
AE + +V + + SE+ DD P Y+ D + + S S+ +T
Sbjct: 676 AEEDAADVKEEVTALAKESEMDFDDFLNDLPPGYLENRDKLMKEEQS-------SAIKTE 728
Query: 288 TKPKDEEGEFTTEIACSSSGLVLNAQ 313
T ++ EF + A ++ Q
Sbjct: 729 TPDDSDDSEFEAKEASDDDENTISKQ 754
Score = 39 (18.8 bits), Expect = 8.9e-26, Sum P(4) = 8.9e-26
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 658 LSWMV-QKETSSLHCSGGI---LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETL 713
LS++V Q E S G+ +AD L S + +E FR E ++ ET+
Sbjct: 616 LSFIVDQTEKFSQQLVEGMNKSVADTPSLNS--SRLTSPKRESDDDFRPESGSEDDEETI 673
Query: 714 NLDEED 719
EED
Sbjct: 674 AKAEED 679
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 17 DEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSL 54
DE D LS++ E+ P R K +P D L
Sbjct: 768 DELEADNDLSVEQLLAKYKSEQPPSPKRRKLAPRDPEL 805
Score = 39 (18.8 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 1362 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTV 1407
P V+ +T T + +LQQ++++ G + QQ R V
Sbjct: 3143 PAEVMTITQTTTTLPTVGSLQQQQQQQQQQG-GISQPTTQQVRKLV 3187
Score = 38 (18.4 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 679 DQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCR 738
D L + A+ E TED+ + D E+ Q +GL + ++D
Sbjct: 802 DPELDSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATS 861
Query: 739 -VVPNGSSA 746
+GS+A
Sbjct: 862 GAAGSGSTA 870
Score = 38 (18.4 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 551 ILEDISQPARSNQSLVLGKTLSM-N-----RSACSNHSVALGKPVVT 591
+ ED A++ ++L G LS+ N R C++ ++ +P ++
Sbjct: 1164 LYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFEARPTIS 1210
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 293 (108.2 bits), Expect = 6.5e-33, Sum P(4) = 6.5e-33
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1167 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEI 1254
Score = 142 (55.0 bits), Expect = 6.5e-33, Sum P(4) = 6.5e-33
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 766
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 826
Query: 1057 HPLL 1060
HP L
Sbjct: 827 HPEL 830
Score = 75 (31.5 bits), Expect = 6.5e-33, Sum P(4) = 6.5e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 530 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 572
Score = 52 (23.4 bits), Expect = 6.5e-33, Sum P(4) = 6.5e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 49 (22.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 195 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 247
Score = 42 (19.8 bits), Expect = 8.6e-20, Sum P(2) = 8.6e-20
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 1156 NSLSQRQPG---QEIPTDYSDSKLVEAPSC--EGVWYNSSKIKAALEVLQS-LAKPRGNT 1209
NSL G E+ YS + ++++ S +G YN SK+K + + L+S L +
Sbjct: 78 NSLLGETSGASTSEMLNTYSLNGVLQSESKFDKGNLYNFSKLKKSRKWLKSILLSDESSE 137
Query: 1210 VTNHS 1214
+HS
Sbjct: 138 ADSHS 142
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 264 (98.0 bits), Expect = 7.2e-33, Sum P(5) = 7.2e-33
Identities = 61/155 (39%), Positives = 83/155 (53%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K GG +A++F+Q TKMLD+LE L +Y RLDGT V R FN +
Sbjct: 1385 LKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAF 1444
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
I+S ++ LG+N+ A V+ DL WNP + Q DR HRIGQTR V + R + T+E
Sbjct: 1445 ILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIES 1504
Query: 1377 RILALQQKKREMVASAFGEDE-TGGQQTRLTVDDL 1410
IL +KR + E E T T+L V D+
Sbjct: 1505 NILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDM 1539
Score = 156 (60.0 bits), Expect = 7.2e-33, Sum P(5) = 7.2e-33
Identities = 55/188 (29%), Positives = 89/188 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR- 943
L + W ++LDEA +IKN R+Q +A R + R L+GTP+QN + +L+S FL
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1001
Query: 944 -------YDPFAVYKSFCSMIKVPISKNPVKGYKKL-----QAVLKT-IMLRRTKGTLLD 990
+ FA ++F + P+ + G + + Q V K +LR L
Sbjct: 1002 TDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLK 1061
Query: 991 GEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLR 1050
+ +P K + + +R Y SR Q KE A+G NY++I+ L++
Sbjct: 1062 ADVEKQMPGKYEHVVYCRLSKRQRYLYDGFM--SRAQTKETLASG----NYLSIINCLMQ 1115
Query: 1051 LRQACDHP 1058
LR+ C+HP
Sbjct: 1116 LRKVCNHP 1123
Score = 93 (37.8 bits), Expect = 7.2e-33, Sum P(5) = 7.2e-33
Identities = 32/100 (32%), Positives = 46/100 (46%)
Query: 594 HSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ-PNAEASAPDGVLAVPLLR 652
HS + PG T +S +S E + A S P + P +L L
Sbjct: 769 HSRAASSEASPGTVATKPSEPESVSSIEAPAEKHAQPSESPGPGLKTPIPH-LLRGTLRE 827
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L W+ ++ ++ GILAD+ GLGKTI TIAL+
Sbjct: 828 YQHFGLDWLAGLYSNHIN---GILADEMGLGKTIQTIALL 864
Score = 59 (25.8 bits), Expect = 7.2e-33, Sum P(5) = 7.2e-33
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD-----VVITTYSI 818
LVV PTSV+ W E+ K G ++ Y+G+ + D V+IT+Y +
Sbjct: 878 LVVVPTSVILNW--EMEFKKWCPG-FKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQL 934
Query: 819 V 819
V
Sbjct: 935 V 935
Score = 47 (21.6 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 556 SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMK 615
++P RS+Q + K +S R+A A+ P+ S S + GV + G
Sbjct: 117 AKPTRSSQKQYVSKAVSSQRNA------AVSSPLPMSPSRSGINRRSLAGVAVNGSPSTT 170
Query: 616 SKAS 619
+K S
Sbjct: 171 AKGS 174
Score = 43 (20.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 337 EDSKNGL-PIYGNSLSNITLGDGKR 360
E ++G P+YG+SL D K+
Sbjct: 1245 ESKRHGRRPVYGSSLIEFLTADSKQ 1269
Score = 39 (18.8 bits), Expect = 7.2e-33, Sum P(5) = 7.2e-33
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 1123 ICERLTADDNQCPTRNCKIR 1142
+ E LTAD Q PT + +R
Sbjct: 1259 LIEFLTADSKQRPTAHGPLR 1278
Score = 39 (18.8 bits), Expect = 3.5e-26, Sum P(5) = 3.5e-26
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 768 PTSVLRQWAEELRNK 782
P +LR+ EE+R K
Sbjct: 385 PEDILREQQEEMRGK 399
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 233 (87.1 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 59/176 (33%), Positives = 97/176 (55%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D H +DN + + + K G + ++FSQ++
Sbjct: 410 NHP--YLFDGAEPGPPFTTDQH---LVDN---SGKMVVLDKLLMKFKEQGSRVLIFSQFS 461
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNM 1329
+MLDLLE +Y RLDG+ R A++ +N P+ + +++ +A LG+N+
Sbjct: 462 RMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNA-PDSKKFIFMLTTRAGGLGINL 520
Query: 1330 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1385
A V++ D WNP ++ QA+DRAHRIGQ + V V RL +NTV++RI+ + K
Sbjct: 521 ATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAK 576
Score = 177 (67.4 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W +++DEA IKN +++++ L ++ R ++GTP+QN + +L++ FL
Sbjct: 249 LKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLP 308
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
D F F S ++L VL+ +LRR K D E + LP K + +
Sbjct: 309 DIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKS---DVEKSL-LPKKEVKV 364
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D AG V++ ++ +L+ LR+ +HP L G
Sbjct: 365 -YVGLSKMQREWYTKVLMKDIDIIN---GAGKVEK--ARLMNILMHLRKCVNHPYLFDG 417
Score = 96 (38.9 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 42/161 (26%), Positives = 73/161 (45%)
Query: 533 QSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS-VALGKPVVT 591
+S+ +D VDDEP+ D + + + L L KT + + S + +A G PV T
Sbjct: 23 ESSGNDPSMEVDDEPES---SDAADSFKRFERL-LQKTENFSHCLSSGDAKLATGAPVDT 78
Query: 592 SQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLL 651
+ S G G + DE ++ A++ + S P + +
Sbjct: 79 KKRGRPSKKNGIDG---DHRHRKTEQEEDEEMVAD-AIKSDDLVIFDKS-PFYIENGEMR 133
Query: 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ + + ++ GILAD+ GLGKT+ TI++I
Sbjct: 134 DYQVRGLNWLASLQHNKIN---GILADEMGLGKTLQTISMI 171
Score = 82 (33.9 bits), Expect = 2.8e-31, Sum P(3) = 2.8e-31
Identities = 37/154 (24%), Positives = 72/154 (46%)
Query: 678 DDQGLGKTISTIALILKERPPSFRTEDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 735
D++ + I + L++ ++ P F E+ R Q+ LN ++NG+ + E
Sbjct: 104 DEEMVADAIKSDDLVIFDKSP-FYIENGEMRDYQVRGLNWLASLQHNKINGI--LADEMG 160
Query: 736 YCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH 795
+ + + +++ K + A+ LV+ P S L+ WA E + S ++ VL+
Sbjct: 161 LGKTL---QTISMIGYMKHYKNK-ASPHLVIVPKSTLQNWANEFKKWCPSINAV-VLIGD 215
Query: 796 GSSRT---KDPCELAKFDVVITTYSIVSMEVPKQ 826
++R +D KFDV TTY ++ ++V Q
Sbjct: 216 EAARNQVLRDVILPQKFDVCCTTYEMM-LKVKTQ 248
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 234 (87.4 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 50/134 (37%), Positives = 83/134 (61%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G + ++FSQ +++LD+LE + +Y R+DG+ + R +A+ D+N P+
Sbjct: 511 LKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNA-PDS 569
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V RL
Sbjct: 570 KKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTD 629
Query: 1372 NTVEDRILALQQKK 1385
N+VE++IL +K
Sbjct: 630 NSVEEKILERATQK 643
Score = 188 (71.2 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 51/181 (28%), Positives = 94/181 (51%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL K+ W +++DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLL 371
Query: 944 YDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
D F+ + F ++ K K+L VL+ +LRR K D E + LP K +
Sbjct: 372 PDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKS---DVETSL-LPKKEL 427
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
L V + ++ +Y + I +D + G+ K++ +L ++++LR+ C+HP L
Sbjct: 428 NL-YVGMSSMQKKWYKK--ILEKDLDAVNGSNGS-KESKTRLLNIMMQLRKCCNHPYLFD 483
Query: 1063 G 1063
G
Sbjct: 484 G 484
Score = 74 (31.1 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 651 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR +I ++W+V + + GILAD+ GLGKT+ TI+ +
Sbjct: 196 LRPYQIQGVNWLVSLHKNKI---AGILADEMGLGKTLQTISFL 235
Score = 66 (28.3 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 818
LV+ P S L W E+ N+ T ++ + G + K FDVVI +Y I
Sbjct: 249 LVIAPKSTLNNWLREI-NRWTP--DVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEI 305
Query: 819 VSMEVPKQPL 828
+ E K PL
Sbjct: 306 IIRE--KSPL 313
Score = 44 (20.5 bits), Expect = 2.7e-13, Sum P(5) = 2.7e-13
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1148 VFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIK 1193
V AT + + + G+ I +++D E + +GV +KI+
Sbjct: 1062 VLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIE 1107
Score = 37 (18.1 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 32 LLGILEEEKQPDRVKSSPGDLSLRNLSQDE 61
+L +LEE K + K D+ R +E
Sbjct: 136 VLDVLEENKANGKGKGKHQDVRRRKTEHEE 165
Score = 37 (18.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 17 DEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
D++ + D D ++ L QP ++ D+ L + EL VG S
Sbjct: 382 DDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSS 435
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 253 (94.1 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 51/140 (36%), Positives = 84/140 (60%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+A++F Q MLD++E L S+ Y RLDG++ R K V+ FN P + ++++
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLT 1707
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
K LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V R+ K T+E++I+
Sbjct: 1708 TKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIM 1767
Query: 1380 ALQQKKREMVASAFGEDETG 1399
LQ+ K + ++ + +G
Sbjct: 1768 GLQKFKMNIASTVVNQQNSG 1787
Score = 167 (63.8 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 56/189 (29%), Positives = 85/189 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K + VLDE IKN ++++A+A + A R L+GTPIQN + +L+S F FL
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMP 1456
Query: 945 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 992
K F PI SK G L+A+ K + MLRR K +L
Sbjct: 1457 GFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLS-- 1514
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
+LPPK+I + D ++ Y ++ ++ + +I L +R
Sbjct: 1515 ---DLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMR 1571
Query: 1053 QACDHPLLV 1061
+ C+HP LV
Sbjct: 1572 KLCNHPALV 1580
Score = 92 (37.4 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNK-R 708
L ++Q+ ++W+ LH GIL DD GLGKT+ TI +I ++ R ED K R
Sbjct: 1272 LRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIIASDQ--YLRKEDYEKTR 1326
Query: 709 QLET 712
+E+
Sbjct: 1327 SVES 1330
Score = 71 (30.1 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 720 NGIQVNGLDLVKQESDYCRVVPNGSSAKS-FNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 778
+GI + + L K C + + K + + R A +L++CP S+ W E
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESR-ALPSLIICPPSLTGHWENE 1350
Query: 779 LRNKVTSKGSLSVLVYHGSSR---TKDPCELAKFDVVITTYSI 818
L V+VY G T P +L+ D+++T+Y +
Sbjct: 1351 FDQYAPF---LKVVVYAGGPTVRLTLRP-QLSDADIIVTSYDV 1389
Score = 47 (21.6 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 177 IDSRSVDA---SPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSH 233
++SR++ + P S+T +++ + Y + + + P L + D V+S+
Sbjct: 1328 VESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADIIVTSY 1387
Query: 234 NVASTDSTICHGSE 247
+VA D + + +E
Sbjct: 1388 DVARNDLAVLNKTE 1401
Score = 42 (19.8 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 999 PKVIMLKQVDFTDEERDFYSQLEINSRDQ-FK-EYAAAGTVK---QNYVNILLMLLRLRQ 1053
PK + + V + ERDF Q+ S+ + FK A T++ Q+ VN L L +
Sbjct: 1232 PKGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHL 1291
Query: 1054 ---ACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAIC 1099
CD L K + ++ S + +K E+ + + SL IC
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASD-QYLRKEDYEKTRSVESRALPSLIIC 1339
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 288 (106.4 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1101 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1160
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1161 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1220
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1221 KQVTVYRLICKGTIEERILQRAKEKSEI 1248
Score = 142 (55.0 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 646 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 705
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 706 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 760
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 761 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 820
Query: 1057 HPLL 1060
HP L
Sbjct: 821 HPEL 824
Score = 75 (31.5 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 524 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 566
Score = 52 (23.4 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 574 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 630
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 631 ITSYQLVVQDV 641
Score = 49 (22.3 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 189 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 241
Score = 42 (19.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSL 1202
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
Score = 38 (18.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKE 1030
LK + +DE + SQ E N ++ +E
Sbjct: 126 LKSILLSDESSEADSQSEDNEEEEEEE 152
Score = 37 (18.1 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 684 KTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 719
K + +I L + ++ED+ + + E L+L E+
Sbjct: 124 KWLKSILLSDESSEADSQSEDNEEEEEEELHLSREE 159
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 288 (106.4 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1167 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEI 1254
Score = 142 (55.0 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 766
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 826
Query: 1057 HPLL 1060
HP L
Sbjct: 827 HPEL 830
Score = 75 (31.5 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 530 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 572
Score = 52 (23.4 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 49 (22.3 bits), Expect = 9.7e-19, Sum P(3) = 9.7e-19
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
YS YDPF Y+ ++ P K K KKL+A LK + +R K + E
Sbjct: 195 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRKDEEVSSE 247
Score = 41 (19.5 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSL 1202
E+ S +G YN SK+K + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRRWLKSI 129
Score = 39 (18.8 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 703 EDDNKRQLETLNLDEED 719
E+D++ + E LNL E+
Sbjct: 149 EEDDEEEEEELNLSREE 165
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 253 (94.1 bits), Expect = 2.5e-32, Sum P(4) = 2.5e-32
Identities = 62/196 (31%), Positives = 104/196 (53%)
Query: 1224 CCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1283
C G + + + S + ++ S D + + +A++F Q MLD++E L
Sbjct: 1650 CGIGSQDSEYNNNVSKKKSLQQQQQQQLISADGV-ISEHRALIFCQLKDMLDIVENELLR 1708
Query: 1284 S---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340
S+ + RLDG+ R V+ FN P + V++++ K LGLN+ A V+ ++
Sbjct: 1709 KYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLTGADTVIFVEH 1768
Query: 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG 1400
WNP + QA+DRAHR+GQ + V+V RL K+T+E++I+ LQ+ K +AS + G
Sbjct: 1769 DWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMN-IASTIVNQQNAG 1827
Query: 1401 QQTRLTVDDLNYLFMV 1416
Q+ + + L LF V
Sbjct: 1828 LQS-MDTNQLLDLFDV 1842
Score = 172 (65.6 bits), Expect = 2.5e-32, Sum P(4) = 2.5e-32
Identities = 55/189 (29%), Positives = 89/189 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K + VLDE IKN ++++++ ++A+ R LSGTPIQN + +L+S F FL
Sbjct: 1427 LTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMP 1486
Query: 945 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 992
K F PI SK G ++++ K + MLRR K +L
Sbjct: 1487 GFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLS-- 1544
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
+LPPK+I + +D ++ Y ++ K G+ K+ ++ L +R
Sbjct: 1545 ---DLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKT-DVQGSEKEGKTHVFQALQYMR 1600
Query: 1053 QACDHPLLV 1061
+ C+HP LV
Sbjct: 1601 KLCNHPALV 1609
Score = 99 (39.9 bits), Expect = 2.5e-32, Sum P(4) = 2.5e-32
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 720 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGR-PAAGTLVVCPTSVLRQWAEE 778
+GI + + L K C +V + + NF E +LV+CP S++ W +E
Sbjct: 1322 HGILCDDMGLGKTLQTIC-IVSSDHHIREENFKETGSAEYRKLPSLVICPPSLIGHWEQE 1380
Query: 779 LRNKVTSKGSLSVLVYHGSSRTKDPC--ELAKFDVVITTYSIVSMEV 823
+ N+ + VLVY GS + P ++ DVV+T+Y + +V
Sbjct: 1381 I-NQYAP--FMKVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCRNDV 1424
Score = 85 (35.0 bits), Expect = 7.0e-31, Sum P(4) = 7.0e-31
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE---RPPSFR-TEDD 705
L ++Q+ ++W+ LH GIL DD GLGKT+ TI ++ + R +F+ T
Sbjct: 1302 LRKYQQEGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIVSSDHHIREENFKETGSA 1358
Query: 706 NKRQLETL 713
R+L +L
Sbjct: 1359 EYRKLPSL 1366
Score = 38 (18.4 bits), Expect = 2.5e-32, Sum P(4) = 2.5e-32
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 204 IGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNV 235
+G + S NLC ++ V ++ HNV
Sbjct: 1000 VGKKGASDKIVKNLCAFLCVDTSEVPEFHHNV 1031
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 261 (96.9 bits), Expect = 3.9e-32, Sum P(4) = 3.9e-32
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G +A++F+Q TK+LD+LE L Y RLDG + R + FNT +
Sbjct: 1255 LQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRI 1314
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+V I+S ++ LG+N+ A V+ D WNP + Q DR HRIGQTR V + R ++T
Sbjct: 1315 TVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHT 1374
Query: 1374 VEDRILALQQKKREMVASAFGE-DETGGQQTRLTVDDL 1410
+E IL +KR++ E D T ++L+V DL
Sbjct: 1375 IESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDL 1412
Score = 140 (54.3 bits), Expect = 3.9e-32, Sum P(4) = 3.9e-32
Identities = 57/201 (28%), Positives = 92/201 (45%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL------- 942
W +VLDEA +IKN R+ +A +RR L+GTP+QN + +L+S FL
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVID 877
Query: 943 --RYDPFAVYKSFCSMIKVPISKNPVKG--YKKLQAVLKTI-----MLRRTKGTLLDGEP 993
+ FA +F P+ K G + + + KT+ +LR L +
Sbjct: 878 GKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADV 937
Query: 994 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 1053
+P K + + +R Y + SR Q K A+G N+++I+ L++LR+
Sbjct: 938 EKQMPAKYEHIVYCKLSKRQRFLYD--DFMSRAQTKATLASG----NFMSIVNCLMQLRK 991
Query: 1054 ACDHPLLVKGFDSNSLLRSSV 1074
C+HP L F+ +L S V
Sbjct: 992 VCNHPNL---FEVRPILTSFV 1009
Score = 92 (37.4 bits), Expect = 3.9e-32, Sum P(4) = 3.9e-32
Identities = 65/290 (22%), Positives = 110/290 (37%)
Query: 410 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE---DLILESKRARFCQEIC 466
N DG +S P DS + S + + E+ E D+ LE+ A E
Sbjct: 464 NQVNDDGRSSTPSSDSND-VLSESDDDMDDELSTSSDEDEEVDADVGLENSPAS--TEAT 520
Query: 467 DGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS----TLNKKELDGVKEDMEAEIKTRSMAS 522
S + I + + NGS + TL+K E E+ + T +S
Sbjct: 521 PTDESLNLIQLKEKYGHFNGSSTVYDSRNKDEKFPTLDKHE----SSSSESSVMTGEESS 576
Query: 523 HLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 582
+ S E+ N +D +S D P + + + S+ L L + ++ S
Sbjct: 577 --IYSSSENESQNENDRESD-DKTPSVGLSALFGKGEESDGDLDLDDSEDFTVNSSSVEG 633
Query: 583 VALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 642
L K V + +++ + +K D +Q + + P
Sbjct: 634 EELEKDQVDNSAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSV----VDVPVP 689
Query: 643 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+L L +Q+ L+W+ + H + GILAD+ GLGKTI TI+L+
Sbjct: 690 S-LLRGNLRTYQKQGLNWLASLYNN--H-TNGILADEMGLGKTIQTISLL 735
Score = 62 (26.9 bits), Expect = 3.9e-32, Sum P(4) = 3.9e-32
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
L+V PTSVL W E+ K + G VL Y+GS + + F V I +Y +
Sbjct: 749 LIVVPTSVLLNW--EMEFKRFAPG-FKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQL 805
Query: 819 V 819
V
Sbjct: 806 V 806
Score = 47 (21.6 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 384 EGNDDLFPCWSTVSDSVEPIDEAVGRNSS 412
E +DD+ ST SD E +D VG +S
Sbjct: 485 ESDDDMDDELSTSSDEDEEVDADVGLENS 513
Score = 47 (21.6 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 952 SFCSMI-KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
+F M+ K+ + P+ G + + K ++ K +++D E I L +V+
Sbjct: 1120 NFLKMVNKLRCDRRPIFGKNLIDLLTKDRRVKYDKSSIIDNELIKPLQTRVL 1171
Score = 44 (20.5 bits), Expect = 3.3e-27, Sum P(4) = 3.3e-27
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 173 VGSHIDSRSVDASPSSITENF---DERYGHYGAS 203
VG S +A+P+ + N E+YGH+ S
Sbjct: 508 VGLENSPASTEATPTDESLNLIQLKEKYGHFNGS 541
Score = 43 (20.2 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 482 LNLNGSRQYFPYAQPSTLNKKELDG 506
LN + QYF Y+ NK++L+G
Sbjct: 1095 LNFQDANQYFKYS-----NKQKLEG 1114
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 545
+++D E ++K HL K+ +S Q + DD
Sbjct: 431 LRKDEEEQLKRIEGKQHLSKMLEKSTQLLEAQLNQVNDD 469
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 288 (106.4 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1097 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1156
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1157 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1216
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1217 KQVTVYRLICKGTIEERILQRAKEKSEI 1244
Score = 148 (57.2 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 643 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 702
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 703 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 757
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 1056
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 758 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 817
Query: 1057 HPLL 1060
HP L
Sbjct: 818 HPEL 821
Score = 75 (31.5 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 521 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 563
Score = 52 (23.4 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 571 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 627
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 628 ITSYQLVVQDV 638
Score = 49 (22.3 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 186 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 238
Score = 42 (19.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 1171 YSDSKLVEAPS-CE-GVWYNSSKIKAALEVLQSL 1202
YS + ++++ S C+ G YN SK+K + + L+S+
Sbjct: 96 YSLNGVLQSESKCDKGNLYNFSKLKKSRKWLKSI 129
Score = 37 (18.1 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 516 KTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI 549
K+R +L LS ES + +D +S DDE ++
Sbjct: 121 KSRKWLKSIL-LSDES---SEADSQSEDDDEEEL 150
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 280 (103.6 bits), Expect = 4.3e-32, Sum P(5) = 4.3e-32
Identities = 61/163 (37%), Positives = 96/163 (58%)
Query: 1237 TLDNISDENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTM 1295
++D E+ K+ + +K G + +++ Q TKM+DL+E L + RLDG+
Sbjct: 1290 SMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSS 1349
Query: 1296 SVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1355
+ R V D+ T PE+ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAH
Sbjct: 1350 KLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAH 1409
Query: 1356 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1398
R+GQTR V+V RL V+ T+E+R+ + K++E V E +T
Sbjct: 1410 RLGQTRQVTVYRLLVRGTIEERMRD-RAKQKEQVQQVVMEGKT 1451
Score = 149 (57.5 bits), Expect = 4.3e-32, Sum P(5) = 4.3e-32
Identities = 52/202 (25%), Positives = 90/202 (44%)
Query: 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
A L K+ W ++LDEAQ+IK+ ++ + + R L+GTPIQN++ +L++ F
Sbjct: 827 ANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHF 886
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTK-------GT 987
+ F + F I + K +L +LK MLRR K G
Sbjct: 887 IMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGD 946
Query: 988 LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLE-INSRDQFKEYAAAGTVKQNYVNILL 1046
++ + + +L + L QV + Y +E + D A+ QN +N ++
Sbjct: 947 KIEIDVLCDLTQRQAKLYQV-LKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVM 1005
Query: 1047 MLLRLRQACDHPLLVKGFDSNS 1068
+ R+ C+HP L + D +S
Sbjct: 1006 ---QFRKVCNHPDLFERADVDS 1024
Score = 80 (33.2 bits), Expect = 4.3e-32, Sum P(5) = 4.3e-32
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+LA L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 701 ILACTLKEYQLKGLNWLANLYDQGIN---GILADEMGLGKTVQSISVL 745
Score = 49 (22.3 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 523 HLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 582
H++ L P ++ + +S + D+ +I +L D++Q ++ VL +S N A N
Sbjct: 925 HMI-LKPFMLRRVKKNVQSELGDKIEIDVLCDLTQ-RQAKLYQVLKSQISTNYDAIEN-- 980
Query: 583 VALGKPVVTSQHSSYSD 599
A S +S SD
Sbjct: 981 AATNDSTSNSASNSGSD 997
Score = 48 (22.0 bits), Expect = 4.3e-32, Sum P(5) = 4.3e-32
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 809
LVV P S L W E+ +K + +L Y G++ D L KF
Sbjct: 759 LVVTPASTLHNWVNEI-SKFLPQ--FKILPYWGNAN--DRKVLRKF 799
Score = 43 (20.2 bits), Expect = 7.9e-28, Sum P(5) = 7.9e-28
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED-DNKRQLETLNLDEEDN 720
+K+ ++ G + DDQ T+ T+ E ED DN E N ++ DN
Sbjct: 185 KKDAAAAAAIGKAIKDDQTHADTVVTVNG--DENEDGNNGEDEDNDNDNENNNDNDNDN 241
Score = 42 (19.8 bits), Expect = 4.3e-32, Sum P(5) = 4.3e-32
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 331 DAKRQCEDSKNGLPIYGNSLS 351
DA ++ ++++GLP YG ++
Sbjct: 438 DANKRKFNTRHGLPTYGMKMN 458
Score = 40 (19.1 bits), Expect = 1.6e-27, Sum P(5) = 1.6e-27
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 703 EDDNKRQLETLNLDEEDNG 721
+++N+ ++ N DEE+NG
Sbjct: 240 DNENENDNDSDNDDEEENG 258
Score = 39 (18.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1035
++ + D ++E D +LE D ++ A+ G
Sbjct: 135 IINEKDADEDEEDDEDELEDGEEDMEEDEASTG 167
Score = 37 (18.1 bits), Expect = 1.4e-31, Sum P(5) = 1.4e-31
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 489 QYFPYAQPSTL-NKKELDGVKEDMEAEIK 516
Q F A S + N+K+ D +ED E E++
Sbjct: 125 QSFKNANLSDIINEKDADEDEEDDEDELE 153
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 284 (105.0 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 57/148 (38%), Positives = 89/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1128 ITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1187
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF + ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1188 RDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1247
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1248 KQVTVYRLICKGTIEERILQRAKEKSEI 1275
Score = 146 (56.5 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 53/205 (25%), Positives = 100/205 (48%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 644 RVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 703
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 704 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 758
Query: 1000 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYV---NILLMLLRLRQA 1054
K+ +L T +R Y L+ I+ D + ++ G+ +Q + +++ ++++ R+
Sbjct: 759 KIEILTYCQLTSRQRLLYQALKNKISIEDLLQ--SSMGSAQQAHSTTSSLMNLVMQFRKV 816
Query: 1055 CDHPLLVKGFDSNSLLRSSVEMAKK 1079
C+HP L F+ + RS M+ K
Sbjct: 817 CNHPDL---FERQEI-RSPFHMSLK 837
Score = 77 (32.2 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 632 ISQPNAEASA--PDGVLAVPLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTIST 688
+S P+ +A P + L+ +Q ++W+ ++ GILAD+ GLGKT+ +
Sbjct: 498 LSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 554
Query: 689 IALI--LKER 696
IAL+ L ER
Sbjct: 555 IALLAHLAER 564
Score = 53 (23.7 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-----------ELAKFDVV 812
L++ P S L W +E V VL Y G+ + + A F VV
Sbjct: 572 LIISPASTLNNWHQEFSRFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVV 628
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 629 ITSYQLVVQDV 639
Score = 46 (21.3 bits), Expect = 4.3e-29, Sum P(5) = 4.3e-29
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 467 DGSSSRSPID-GRHLSLNLNGSRQYFPYAQPSTL-NKKELDGVKEDMEAEIKTRSMASHL 524
D SS R ID G + +N++ Y + L N KE + + + S
Sbjct: 421 DNSSQRQ-IDIGGGVMVNVSQEDYDSDYYKSQALKNAKEAYQIHQARTRLFDEEAKDSRC 479
Query: 525 LKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSL 565
L S+ S S +S+ P I EDI QP N L
Sbjct: 480 ASLHAASM-SGSGFGESYSLSNPSIQAGEDIPQPTIFNGKL 519
Score = 45 (20.9 bits), Expect = 7.8e-21, Sum P(5) = 7.8e-21
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 773 RQWAEELRNKVTSKGSLSVL 792
RQW EE ++V +G L L
Sbjct: 932 RQWEEEKMSEVKGRGRLEKL 951
Score = 42 (19.8 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1105 PPEDAVVSICGHV 1117
P +D VV +C HV
Sbjct: 1024 PRKDRVVCVCAHV 1036
Score = 41 (19.5 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 424 DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLN 483
D +G SL S N ++ K++H E+K + C+ DG + ++G L +
Sbjct: 60 DDSDDGLGEGSSLASSNPLLAVKKDHISPEDETKDS--CR---DGETECGTLNGAVLQEH 114
Query: 484 LNGSRQYFPYAQPSTLNKKELDGV 507
+ +++ ++K L G+
Sbjct: 115 KADKASLYNFSRLKK-SRKWLKGI 137
Score = 37 (18.1 bits), Expect = 1.5e-31, Sum P(6) = 1.5e-31
Identities = 21/96 (21%), Positives = 37/96 (38%)
Query: 277 FQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQC 336
+ H + ++ A +E E ++ +SS ++ GG G M+ V DY +
Sbjct: 396 YAHFMGGKQNAGGDCTQE-EILRKLEDNSSQRQIDI-GG---GVMVNVSQEDYDSDYYKS 450
Query: 337 EDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHS 372
+ KN Y + L D + C H+ S
Sbjct: 451 QALKNAKEAYQIHQARTRLFDEEAKDSRCASLHAAS 486
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 286 (105.7 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1105 ITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1164
Query: 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1165 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1224
Query: 1361 RPVSVLRLTVKNTVEDRILALQQKKREM 1388
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1225 KQVTVYRLICKGTIEERILQRAKEKSEI 1252
Score = 141 (54.7 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 48/185 (25%), Positives = 90/185 (48%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 648 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 707
Query: 947 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 708 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 762
Query: 1000 KVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYV---NILLMLLRLRQAC 1055
K+ +L T ++ Y L+ S D + ++ GT +Q +++ ++++ R+ C
Sbjct: 763 KIEILMYCQQTSRQKLLYQALKNKISIDDLLQ-SSMGTTQQAQTTTSSLMNLVMQFRKVC 821
Query: 1056 DHPLL 1060
+HP L
Sbjct: 822 NHPEL 826
Score = 75 (31.5 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 696
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 526 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 568
Score = 52 (23.4 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 812
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 576 LIISPASTLNNWHQEFARFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVV 632
Query: 813 ITTYSIVSMEV 823
IT+Y +V +V
Sbjct: 633 ITSYQLVVQDV 643
Score = 45 (20.9 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 280 LLSSEETAT-KPKDEEGEFTTEIACSSSGL 308
LLS + + T P DE+GE E + S L
Sbjct: 133 LLSDDSSDTDSPSDEDGEDEEEFSLSREEL 162
Score = 42 (19.8 bits), Expect = 8.1e-32, Sum P(6) = 8.1e-32
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 316 PGKGSMLKVPAIDYLDAKRQ---CEDSKNGLP-IYGNSLS--NITLGDGKRSAQPC 365
P GS K +I+ L+A+R+ K LP Y S N+ L + K+ A C
Sbjct: 264 PPPGSKKKHMSIEQLNARRRKVWLSIVKKELPKAYKQKASARNLFLTNSKKLAHQC 319
Score = 42 (19.8 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1178 EAPSCEGVWYNSSKIKAALEVLQSL 1202
E+ S +G YN SK+K + + L+S+
Sbjct: 108 ESKSEKGSLYNFSKLKKSRKWLKSI 132
Score = 41 (19.5 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 936 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
YS YDP+ Y+ ++ P K K KKL+ LK + +R + L E
Sbjct: 191 YSAGLLSTYDPY--YEQQRHLLG-P-KKKKFKEEKKLKGKLKKVKKKRRRDEDLSSE 243
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 230 (86.0 bits), Expect = 8.9e-32, Sum P(5) = 8.9e-32
Identities = 49/130 (37%), Positives = 78/130 (60%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K G + ++FSQ +++LD+LE +Y R+DG + R A+ ++N E V
Sbjct: 502 LKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFV 561
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
+++ +A LG+N+ A V+L D WNP + QA+DRAHRIGQT+ V V R V NT+E
Sbjct: 562 FLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIE 621
Query: 1376 DRILALQQKK 1385
+++L +K
Sbjct: 622 EKVLERAAQK 631
Score = 179 (68.1 bits), Expect = 8.9e-32, Sum P(5) = 8.9e-32
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K W +++DEA IKN + +A+ ++ R ++GTP+QN I +L++ FL
Sbjct: 303 LKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLP 362
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
D F ++F ++ ++L VL+ +LRR K D E + LP K + L
Sbjct: 363 DVFGDSEAFDQWFSGE-GQDSDTVVQQLHRVLRPFLLRRVKA---DVEKSL-LPKKEVNL 417
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ T+ +R +Y + I +D A G +++ +L ++++LR+ C+HP L +G
Sbjct: 418 -YLKMTEMQRTWYQK--ILEKDIDAVNGANGK-RESKTRLLNIVMQLRKCCNHPYLFEG 472
Score = 86 (35.3 bits), Expect = 8.9e-32, Sum P(5) = 8.9e-32
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 615 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA-LSWMVQKETSSLHCSG 673
+++A ++ +L+ G S +P + +R +IA L+W++ SLH +G
Sbjct: 152 RTEAEEDAELLKDEKHGGSAETVFRESPAFIQGT--MRDYQIAGLNWLI-----SLHENG 204
Query: 674 --GILADDQGLGKTISTIALI 692
GILAD+ GLGKT+ TI+ +
Sbjct: 205 ISGILADEMGLGKTLQTISFL 225
Score = 59 (25.8 bits), Expect = 8.9e-32, Sum P(5) = 8.9e-32
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 818
LV+ P S L W E K T + ++VLV G+ + + FDV IT+Y +
Sbjct: 239 LVIVPKSTLDNWKREF-GKWTPE--VNVLVLQGAKEERAALIAERLVDESFDVCITSYEM 295
Query: 819 VSME 822
+ E
Sbjct: 296 ILRE 299
Score = 37 (18.1 bits), Expect = 8.9e-32, Sum P(5) = 8.9e-32
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 178 DSRSVDASPSSITENFDE 195
D+ VDA+P S DE
Sbjct: 14 DASMVDAAPESAKRRGDE 31
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 235 (87.8 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 1235 GDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1294
GD L +++ + + + +K + ++FSQ T++LD+LE L QY R+DG
Sbjct: 487 GDHL--VTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGN 544
Query: 1295 MSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1353
RD +++ +N E V ++S +A LG+N+ A V+L D WNP + QA DR
Sbjct: 545 TGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDR 604
Query: 1354 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDL 1410
AHRIGQ + V V R +N +E +++ KK + A + Q+T + D+L
Sbjct: 605 AHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKT-VNKDEL 660
Score = 175 (66.7 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W +++DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++F ++ + + ++L VL+ +LRR K + G LPPK +
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 425
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V + ++ +Y L +D E G ++ +NI + +LR+ C+HP L +G
Sbjct: 426 LKVGMSQMQKQYYKALL--QKDL--EVVNGGGERKRLLNIAM---QLRKCCNHPYLFQG 477
Score = 83 (34.3 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 651 LRHQRIA-LSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LR ++A L+W+++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGIN---GILADEMGLGKTLQTISLL 233
Score = 52 (23.4 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCELA-KFDVVITTYSIVSM 821
+VV P S L W E+R ++ L R ++ +A KFD+ +T++ +
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 306
Query: 822 E 822
E
Sbjct: 307 E 307
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 248 (92.4 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 54/151 (35%), Positives = 81/151 (53%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G +A++F+Q TK+LD+LE L +Y RLDG + R + FN P++ V I+S
Sbjct: 1382 GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILST 1441
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
++ LG+N+ A V+ D WNP + Q DR HRIGQ R V + R + T+E I+
Sbjct: 1442 RSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIK 1501
Query: 1381 LQQKKREMVASAFGEDE-TGGQQTRLTVDDL 1410
+KR++ E E T + +V DL
Sbjct: 1502 KANQKRQLDNVVIQEGEFTTDYFGKFSVRDL 1532
Score = 105 (42.0 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 942
W ++LDEA +IKN R+ RA + R L+GTP+QN + +L+S FL
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFL 997
Score = 97 (39.2 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 509 EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLG 568
ED+ E +R M S L S SI + S +S D E D +S+P RS+++ G
Sbjct: 686 EDLNQESDSR-MNSLLDSDSVSSISDSESSEESSSDTEMD---QSTVSEPPRSSET---G 738
Query: 569 KTLSMNRSACSNHSVALGKP---VVTSQHSSYSDYPGYPG---VPLTGLGGMKSKASDER 622
+ S +N ++ + ++S + SD + + G G + AS +
Sbjct: 739 SNTGL-ASLFTNGTIVSDEEDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDE 797
Query: 623 LILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGL 682
V + S+ + P +L L +Q+ L+W+ ++ + GILAD+ GL
Sbjct: 798 DDSNVEIVNGSKVK-DVPIPS-LLRGTLRPYQKQGLNWLASLYNNN---TNGILADEMGL 852
Query: 683 GKTISTIALI 692
GKTI TI+L+
Sbjct: 853 GKTIQTISLL 862
Score = 85 (35.0 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 971 KLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1030
+L VL+ +LRR K D E +P K + + +R Y + SR + KE
Sbjct: 1060 RLHQVLRPYLLRRLKK---DVEK--QMPGKYEHIVYCRLSKRQRFLYD--DFMSRAKTKE 1112
Query: 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ 1085
A+G N+++I+ L++LR+ C+HP L F+ ++ +S M + +P Q
Sbjct: 1113 TLASG----NFLSIINCLMQLRKVCNHPDL---FEVRPIV-TSFAMPRSIPSYYQ 1159
Score = 65 (27.9 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS-----SRTKDPCELAKFDVVITTYSI 818
L++ PTSV+ W E+ K + G VL Y+GS + K + F V IT+Y +
Sbjct: 876 LIIVPTSVMLNW--EMEFKKFAPG-FKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQL 932
Query: 819 V 819
V
Sbjct: 933 V 933
Score = 51 (23.0 bits), Expect = 4.2e-27, Sum P(5) = 4.2e-27
Identities = 34/139 (24%), Positives = 53/139 (38%)
Query: 12 EVSAAD-EFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHS 70
E S+ D E +DD D D G L Q D V + + +L++D+ S
Sbjct: 638 ETSSEDAESSDDD----DTDVTRG-LASLYQNDEVADFATTTFEYSAEEKKLIEDLNQES 692
Query: 71 NLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSAS-FSDWFNQNSGTCCPESVG-I 128
+ ++ S + + DS S E + T S S N+G + G I
Sbjct: 693 DSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFTNGTI 752
Query: 129 SQFETPGCSTASSF-SEGD 146
E S +S+F +E D
Sbjct: 753 VSDEEDDVSISSNFENESD 771
Score = 50 (22.7 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 484 LNGSRQYFPYAQPS-----TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 538
+NG+++Y + + +L+ +EL D+E ++ ++S++ +++S D
Sbjct: 586 INGNKKYDVNGKSNDENDMSLSVEELRKKYADLETSVEP--LSSNVTSDKERESETSSED 643
Query: 539 CKSHVDDEPDI 549
+S DD+ D+
Sbjct: 644 AESSDDDDTDV 654
Score = 47 (21.6 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 26/106 (24%), Positives = 52/106 (49%)
Query: 1149 FSKATLNNSLSQRQPGQEIPTDYSDSK---LVEAPSCEGVWYNSSKIKAA--LEVLQSLA 1203
F+ T S +++ +++ + SDS+ L+++ S + + S +++ E+ QS
Sbjct: 670 FATTTFEYSAEEKKLIEDLNQE-SDSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTV 728
Query: 1204 K--PRGN-TVTNHSLRHSF-NGSICCPGDSNDLHGGDTLDNISDEN 1245
PR + T +N L F NG+I + +D+ +N SDE+
Sbjct: 729 SEPPRSSETGSNTGLASLFTNGTIVSD-EEDDVSISSNFENESDES 773
Score = 44 (20.5 bits), Expect = 9.7e-32, Sum P(6) = 9.7e-32
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 59 QDELVQDVGSHSNLQLQSEISGAES 83
QDE+++ S ++++S++S AE+
Sbjct: 229 QDEIIELSDDSSVVEIESDLSDAET 253
Score = 43 (20.2 bits), Expect = 8.6e-11, Sum P(6) = 8.6e-11
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 1229 SNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1259
S D G+ L DE +++AA ++ + +
Sbjct: 1550 SGDAKMGNVLAQAEDEEDRVAAGAALKEVAI 1580
Score = 38 (18.4 bits), Expect = 8.0e-26, Sum P(6) = 8.0e-26
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 690 ALILKERPPSFRTE-DDNKRQLETLNLDEEDN 720
A + R P+ E DDN + N ++ DN
Sbjct: 538 AQLTSSREPTVEAESDDNSTTFDD-NTNDSDN 568
Score = 38 (18.4 bits), Expect = 2.7e-10, Sum P(6) = 2.7e-10
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1383 QKKREMVASAFGEDETGG-QQTRLTV---DDLNY 1412
Q E+V F +DET Q L V +++NY
Sbjct: 1159 QSTNELVKRQFNKDETVSFQALNLDVTGCENMNY 1192
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 274 (101.5 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 58/151 (38%), Positives = 92/151 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYR---RLDGTMSVFARDKAVKDFNTLPEVSVMI 1317
G K ++F+Q+TK+LDLLE L++S + + RLDG+ + RD+ + FN P+ V +
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFL 686
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
S +A LG+N+VAA V+L+D WNP + QAIDR HRIGQ PV + R +K+++E+
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 1378 ILALQQKKR--EMVASAFGEDETGGQQTRLT 1406
+++ KR E + G+ + +LT
Sbjct: 747 LISRSGSKRFLERLVIQMGQFKFSNFNKKLT 777
Score = 104 (41.7 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W +++DE +KN + + + L R L+GTP+QN +++L+S F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILP 349
Query: 945 DPF 947
D F
Sbjct: 350 DIF 352
Score = 69 (29.3 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L W++ + L+ GILAD+ GLGKT+ I+ +
Sbjct: 178 YQMDGLEWLITLFQNGLN---GILADEMGLGKTLQCISFL 214
Score = 68 (29.0 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 955 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 1014
++IK+ I + +K L +LK MLRR K ++ NLPPK L + T ++
Sbjct: 387 NLIKLNIQETLIKN---LHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQK 438
Query: 1015 DFYSQLEINSR--DQFKEYAAAGTVKQNY 1041
Y +N + D E +K N+
Sbjct: 439 KIYYDA-VNDKLFDSLVETNLKAFIKFNH 466
Score = 64 (27.6 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK----FDVVITTYSI 818
LVV P S L W E+R K K + V Y G+ + ++ +L + ++++T+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIR-KFAPK--IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEI 282
Score = 40 (19.1 bits), Expect = 2.7e-07, Sum P(5) = 2.7e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 1143 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 1189
+ LS + K+T N SQ ++ SD ++ E YNS
Sbjct: 798 MELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 274 (101.5 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 58/151 (38%), Positives = 92/151 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYR---RLDGTMSVFARDKAVKDFNTLPEVSVMI 1317
G K ++F+Q+TK+LDLLE L++S + + RLDG+ + RD+ + FN P+ V +
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFL 686
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
S +A LG+N+VAA V+L+D WNP + QAIDR HRIGQ PV + R +K+++E+
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 1378 ILALQQKKR--EMVASAFGEDETGGQQTRLT 1406
+++ KR E + G+ + +LT
Sbjct: 747 LISRSGSKRFLERLVIQMGQFKFSNFNKKLT 777
Score = 104 (41.7 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W +++DE +KN + + + L R L+GTP+QN +++L+S F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILP 349
Query: 945 DPF 947
D F
Sbjct: 350 DIF 352
Score = 69 (29.3 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L W++ + L+ GILAD+ GLGKT+ I+ +
Sbjct: 178 YQMDGLEWLITLFQNGLN---GILADEMGLGKTLQCISFL 214
Score = 68 (29.0 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 955 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 1014
++IK+ I + +K L +LK MLRR K ++ NLPPK L + T ++
Sbjct: 387 NLIKLNIQETLIKN---LHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQK 438
Query: 1015 DFYSQLEINSR--DQFKEYAAAGTVKQNY 1041
Y +N + D E +K N+
Sbjct: 439 KIYYDA-VNDKLFDSLVETNLKAFIKFNH 466
Score = 64 (27.6 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK----FDVVITTYSI 818
LVV P S L W E+R K K + V Y G+ + ++ +L + ++++T+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIR-KFAPK--IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEI 282
Score = 40 (19.1 bits), Expect = 2.7e-07, Sum P(5) = 2.7e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 1143 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 1189
+ LS + K+T N SQ ++ SD ++ E YNS
Sbjct: 798 MELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 225 (84.3 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 42/118 (35%), Positives = 73/118 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 844 GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASIFVFLLTT 903
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 904 RVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 961
Score = 163 (62.4 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
+++ W V+LDE I+N + AC R R LSG+P+QN + +L+S F F+
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 683
Query: 945 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 992
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 684 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 740
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
++LP K + TDE+ Y I+S++ ++ + + I L+ LR
Sbjct: 741 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-IDSKEVYR-------ILNGEMQIFSGLVALR 792
Query: 1053 QACDHPLLVKGFDSN 1067
+ C+HP L G N
Sbjct: 793 KICNHPDLFSGGPKN 807
Score = 97 (39.2 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 490 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 544
Query: 702 TEDDNKR 708
T N R
Sbjct: 545 TRGSNYR 551
Score = 67 (28.6 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 816
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 558 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSFTHKKEKLVRDIAHCHGILITSY 614
Query: 817 SIVSM 821
S + +
Sbjct: 615 SYIRL 619
Score = 40 (19.1 bits), Expect = 6.9e-26, Sum P(4) = 6.9e-26
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 697 PPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQES 734
P S RT++ + Q + ++ EE Q NG+ + ES
Sbjct: 7 PHSSRTQEQDCLQSQDVSESEEATIKQENGVGVELGES 44
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 236 (88.1 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 60/167 (35%), Positives = 95/167 (56%)
Query: 1239 DNISDENEKIAAKCSIDSIKL----GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1294
D+I + + K+ C +D + GG + ++FSQ TK+LD+L+ + Y RLDG+
Sbjct: 340 DHIVEASGKL---CLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGS 396
Query: 1295 MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354
+ R A+K+F P + V ++S +A +G+N+ AA V+ D +NP + QAI RA
Sbjct: 397 VRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARA 455
Query: 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQ 1401
HRIGQ +PV ++RL ++TVE+ I K + +A E GGQ
Sbjct: 456 HRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLT-NAIVE---GGQ 498
Score = 150 (57.9 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 50/178 (28%), Positives = 82/178 (46%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD--PF 947
W +V+DEA +KN + + L L+GTPIQN++ +LYS F+ D P
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPDIFPR 227
Query: 948 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
K F + + K K+L +L+ +LRR K E +LP KV ++
Sbjct: 228 KQVKEFVEYYQA-VEKESEPA-KELHNLLQPFLLRRVKS-----EVTADLPKKVEVVLYH 280
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
+ +R +Y + D F+ GT ++ V + +L++LR+ HP L G +
Sbjct: 281 GMSALQRKYYKAILTKDLDAFE----GGTGRK--VMLQNVLIQLRKCVAHPYLFNGVE 332
Score = 78 (32.5 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693
G+ + L +Q ++W+VQ C IL D+ GLGKT TI+L+L
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCYQVQHGC---ILGDEMGLGKTCQTISLLL 86
Score = 76 (31.8 bits), Expect = 1.0e-31, Sum P(4) = 1.0e-31
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-----ELAKFDVVITTYS 817
+L++CP SVL W EEL + G LS + Y G+ + E + F V++TTY
Sbjct: 98 SLILCPLSVLSNWKEELER--FAPG-LSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 818 I 818
I
Sbjct: 155 I 155
Score = 39 (18.8 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1274 LDLLEASLKDSSIQYRRLDGTMSVFAR-DKAVKDFN 1308
L LE LK + ++ + T+ F R A KDFN
Sbjct: 818 LSALEKGLKKIYVAAKKRNATVH-FPRIGYATKDFN 852
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 217 (81.4 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 49/133 (36%), Positives = 74/133 (55%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G + ++FSQ T+++DLLE L + Y RLDG+ R +K FN
Sbjct: 704 LPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSP 763
Query: 1314 SVM-IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
M ++S +A LGLN+ A +++ D WNP + QA DRAHRIGQ + V V L
Sbjct: 764 YFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIG 823
Query: 1373 TVEDRILALQQKK 1385
++E+ IL ++K
Sbjct: 824 SIEEVILERAKQK 836
Score = 171 (65.3 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 56/203 (27%), Positives = 93/203 (45%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
L K+ W +++DE +KNH +A+ G R KRR L+GTPIQN++ +L+S FL
Sbjct: 502 LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 561
Query: 944 YDPFAVYKSFCSMIKVPISK---------NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 994
F +F P ++ + +L V++ +LRR K + E
Sbjct: 562 PHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEV---EKF 618
Query: 995 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQA 1054
LP K ++ + D + ++ +Y Q+ D + +G K + L M +LR+
Sbjct: 619 --LPGKTQVILKCDMSAWQKLYYKQVT----DVGRVGLHSGNGKSKSLQNLTM--QLRKC 670
Query: 1055 CDHPLLVKGFDSNSLLRSSVEMA 1077
C+HP L G D N + + A
Sbjct: 671 CNHPYLFVGADYNMCKKPEIVRA 693
Score = 88 (36.0 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q L WMV + + GILAD+ GLGKTI TIALI
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYN---GILADEMGLGKTIQTIALI 425
Score = 69 (29.3 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELA--KFDVVITTYSIV 819
L++ P +VL W E S+S +Y GS RT+ +A KF+V+IT Y ++
Sbjct: 439 LILAPKAVLPNWENEF---ALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLI 495
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 286 (105.7 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 62/160 (38%), Positives = 93/160 (58%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G K ++FSQ T MLD+L + RLDG+MS R+K + FNT PEV
Sbjct: 608 LPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEV 667
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 668 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L + N+L
Sbjct: 728 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSK-NFL 766
Score = 117 (46.2 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 467
Query: 1005 KQVDFTDEERDFYSQL 1020
+ ++ FY+ +
Sbjct: 468 VYAPLSKKQEIFYTAI 483
Score = 68 (29.0 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 674 GILADDQGLGKT---ISTIALILKERPP 698
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRGVP 271
Score = 58 (25.5 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPLLVK 1062
DF +E SQ++ D+ + ++ VN+ L +++ LR+ C+HP L++
Sbjct: 523 DFPNELEKLISQIQPEV-DRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 47 (21.6 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 323
+ S+N ++S EE + K + E E + S++ V + Q S++K
Sbjct: 132 EDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIK 184
Score = 45 (20.9 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 439
Query: 1045 LLMLL 1049
L +L
Sbjct: 440 LHQIL 444
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 226 (84.6 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 64/192 (33%), Positives = 97/192 (50%)
Query: 1196 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSID 1255
L VL L K NH + F+G+ P + DLH + + + + +
Sbjct: 430 LNVLMQLRK-----CCNHP--YLFDGAEPGPPYTTDLH------LVVNSGKMVVLDKLLP 476
Query: 1256 SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS- 1314
+K G + ++FSQ T++LD+LE + Y RLDG R ++ FN P S
Sbjct: 477 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNE-PNSSK 535
Query: 1315 -VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V V R NT
Sbjct: 536 FLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNT 595
Query: 1374 VEDRILALQQKK 1385
VE+RI+ + K
Sbjct: 596 VEERIVERAEMK 607
Score = 189 (71.6 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 54/187 (28%), Positives = 94/187 (50%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
+L I K W +V+DEA IKN +++++ + R L+GTP+QN + +L+
Sbjct: 272 MLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 331
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
+ FL D F + F + K ++L VL+ +LRR K D E +
Sbjct: 332 ALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKA---DVEKSL- 387
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
LP K I + V + +R++Y+++ + D +AG K + + +L +L++LR+ C+
Sbjct: 388 LPKKEIKI-YVGLSKMQREWYTKILMKDIDILN---SAG--KMDKMRLLNVLMQLRKCCN 441
Query: 1057 HPLLVKG 1063
HP L G
Sbjct: 442 HPYLFDG 448
Score = 81 (33.6 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V L +Q L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 154 SPSYVKTGKLRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 202
Score = 39 (18.8 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1282 KDSSIQYRRLDGTMSVFARDKAVK 1305
+ SS Q R+ DGT R K +K
Sbjct: 1011 RTSSAQKRKQDGTPDGRGRKKKLK 1034
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 236 (88.1 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 474 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 533
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 534 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 593
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K + + ++ + Q + D L LF
Sbjct: 594 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 626
Score = 131 (51.2 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 230 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 289
Query: 954 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 290 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 344
Query: 1002 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYV--------NILLMLLRLR 1052
I + + Y + ++ E ++ T+ + ++ L LR
Sbjct: 345 IQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLR 404
Query: 1053 QACDHPLLV 1061
+ C+HP LV
Sbjct: 405 KLCNHPALV 413
Score = 91 (37.1 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 50 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 105
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 106 AFLNKYKLH---GILCDDMGLGKTLQSICIL 133
Score = 73 (30.8 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 157 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 215
Query: 821 MEV 823
++
Sbjct: 216 NDI 218
Score = 51 (23.0 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 562
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 332 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLK 391
Query: 563 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
+ + + L R C NH AL V+T QH +
Sbjct: 392 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 421
Score = 49 (22.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
+ E L +G + Q L K + AL+L + P F+T + K ++ +L + +
Sbjct: 384 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAE-KLAVQNSSLHDIQHAP 442
Query: 723 QVNGLDLVKQESDYCRVVPNGSSAKS 748
+++ L KQ C + NGS+++S
Sbjct: 443 KLSAL---KQLLLDCGL-GNGSTSES 464
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 242 (90.2 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 53/144 (36%), Positives = 85/144 (59%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+A++F Q MLD++E L S+ Y RLDG++ R V +FN+ P + V++++
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLT 1775
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL +N++E++I+
Sbjct: 1776 TMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIM 1835
Query: 1380 ALQQKKREMVASAFGEDETGGQQT 1403
LQ K + + A+ E QT
Sbjct: 1836 GLQ-KFKILTANTVVSAENASLQT 1858
Score = 156 (60.0 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 66/230 (28%), Positives = 104/230 (45%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
VLDE IKN +T+ ++A L+A R LSGTPIQN + +L+S F FL K F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 954 CSMIKVPI-----SKNPVK----GYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
PI +K+ K G ++A+ + ++ LRR K +L +LPPK+
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLK-----DLPPKI 1596
Query: 1002 IMLKQVDFTDEE----RDFYSQLEINSRDQFKEYAAAGTVKQNY---VNILLMLLRLRQA 1054
+ + + DF ++ + D+ + ++A V +N +I L L+
Sbjct: 1597 TQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNV 1656
Query: 1055 CDHPLLVKGFDSNSLLRSSVEMA---KKLPQERQMYLLNCLEASLAICGI 1101
C+HP LV S L + + ++A L L L+ L CGI
Sbjct: 1657 CNHPKLVLR-QSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGI 1705
Score = 95 (38.5 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 614 MKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG 673
++++ + +R L S PN + P ++V L +Q+ ++W+ +LH
Sbjct: 1318 LQARKTRDREFLDYLFNPKSIPNYKVPVP---ISVELRCYQQAGINWLWFLNKYNLH--- 1371
Query: 674 GILADDQGLGKTISTIALI 692
GIL DD GLGKT+ TI ++
Sbjct: 1372 GILCDDMGLGKTLQTICIL 1390
Score = 64 (27.6 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGS-LSVLVYHGS--SRTKDPCELA-KFDVVITTYSI 818
+LV+CP ++ W E+ K +GS L L Y+G R K ++ K ++V+ +Y
Sbjct: 1407 SLVICPPTLTGHWVYEVE-KFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDT 1465
Query: 819 VSMEV 823
V ++
Sbjct: 1466 VRKDI 1470
Score = 45 (20.9 bits), Expect = 1.6e-31, Sum P(5) = 1.6e-31
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 47 SSPGDLSLRNLSQ--DELVQDVGSHSNLQLQSEISGAES 83
S+PG S + + DEL ++ + SN L+ + G+E+
Sbjct: 703 STPGSTSRKRTPRIGDELGGNILAQSNASLKLYLGGSEA 741
Score = 40 (19.1 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 1039 QNYVNILLMLLRLRQACD--HPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEA 1094
Q VNILL L++ + D H L+ G ++R + + LPQ L+ L+A
Sbjct: 431 QRIVNILLQLIQHKNEWDVRHGGLL-GLKYVFVVREEL-LPIYLPQSISNILIGLLDA 486
Score = 39 (18.8 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 545
VKED+ ++ + L +LSP ++ H+ D
Sbjct: 1584 VKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKD 1622
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 215 (80.7 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 55/161 (34%), Positives = 85/161 (52%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-- 1314
+K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1182 LKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK-PDSDRF 1240
Query: 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1300
Query: 1375 EDRILALQQKK----REMVASAFGEDETGGQQ-TRLTVDDL 1410
E +L K R ++ S G E+ QQ ++ ++DL
Sbjct: 1301 EREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDL 1341
Score = 214 (80.4 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 58/180 (32%), Positives = 95/180 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W VV+DEA +KN ++ + L + + L+GTP+QN +++L+S FL
Sbjct: 973 LREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFL-- 1030
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+P A + S ++ + +KLQ++LK +MLRR K D E NL PK +
Sbjct: 1031 EP-AQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLKE---DVEK--NLAPKQETI 1084
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ TD ++ +Y LE N F + T N N+L ++ LR+ C+HP L+ G
Sbjct: 1085 IEVELTDVQKKYYRAILERN----FSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITG 1140
Score = 72 (30.4 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IAL+
Sbjct: 847 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIALL 886
Score = 59 (25.8 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CE---------LA 807
+++ P S + W E N ++ +VYHGS ++ C+
Sbjct: 899 MIIAPLSTITNWEREFSNWT----DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAY 954
Query: 808 KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 955 KFDALITTFEMILSDCPE 972
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 34 GILEEEKQPDRVKSSPGDLSLRNLSQD 60
G L+ E+Q +++S + LR L +D
Sbjct: 1046 GDLKTEEQVQKLQSILKPMMLRRLKED 1072
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 286 (105.7 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 61/160 (38%), Positives = 94/160 (58%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 609 LPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDV 668
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 669 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 728
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 729 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 767
Score = 117 (46.2 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 349 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 408
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 409 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 468
Query: 1005 KQVDFTDEERDFYSQL 1020
+ ++ FY+ +
Sbjct: 469 VYAPLSKKQEIFYTAI 484
Score = 68 (29.0 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 674 GILADDQGLGKT---ISTIALILKERPP 698
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 245 GILADEMGLGKTVQCIATIALMIQRGVP 272
Score = 58 (25.5 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPLLVK 1062
DF +E SQ++ D+ + ++ VN+ L +++ LR+ C+HP L++
Sbjct: 524 DFPNELEKLISQMQPEV-DRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPYLIE 579
Score = 45 (20.9 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 323
+ S+N ++S EE + K + E + + SS+ V + Q S++K
Sbjct: 133 EDESYNIAEVMSKEEILSVAKKNKKENEQKESSSSNLCVEDLQKNKDSNSIIK 185
Score = 45 (20.9 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 381 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 440
Query: 1045 LLMLL 1049
L +L
Sbjct: 441 LHQIL 445
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 281 (104.0 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + A C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 842 MDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 901
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 902 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 961
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397
GQT+ V V++L + T+E+ +L + Q+K ++ DE
Sbjct: 962 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE 1001
Score = 118 (46.6 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 45/196 (22%), Positives = 94/196 (47%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A+ R L+GTP+QN + +L S F+ F+
Sbjct: 621 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 680
Query: 949 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 1005
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 681 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----LLPPKKDRIE 734
Query: 1006 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
++++ YS L N + K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 735 LCAMSEKQEQLYSGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYY 787
Query: 1066 SNSLLRSSVEMAKKLP 1081
+ L+ ++ K P
Sbjct: 788 TPEKLKEMSQLMLKEP 803
Score = 83 (34.3 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 489 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 531
Score = 60 (26.2 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 817
L+V P S + W E+ S L+VL Y+GS + ++V++TTY+
Sbjct: 544 LIVVPASTIDNWLREVNLWCPS---LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 600
Score = 39 (18.8 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 273 SSFNFQHLLSSEETATKPKDEEGEFTTEIACSSS 306
SS + + ++ +++ +P+ + GE + E A +SS
Sbjct: 210 SSSSEEDDVNDDQSVKQPRGDRGEESNESAEASS 243
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 284 (105.0 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 1245 NEKIA---AKCS-ID----SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1296
NE++A KC +D I+ G+K ++FSQ+T MLD+LE L Y+RLDG
Sbjct: 745 NEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTP 804
Query: 1297 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1356
V R + + +FN ++ V ++S +A LG+N+ +A H+++ D+ +NP + QA DR HR
Sbjct: 805 VLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHR 864
Query: 1357 IGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1388
+GQ +PV V RL K TVE +LAL +KK ++
Sbjct: 865 MGQEKPVHVTRLVSKGTVEVGMLALAKKKLQL 896
Score = 115 (45.5 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 49/180 (27%), Positives = 88/180 (48%)
Query: 893 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS--YFR----FLRY-- 944
V+ DE +KN ++ R ++ K++ L+GTP+QN + +L S YF F +Y
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCE 581
Query: 945 DPFAVYKSFCSMIKVPISKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
D + + F + +KN ++ +A+L+ +LRR K +L +LP K
Sbjct: 582 DITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAILQPYILRRLKNQVLG-----SLPSK 636
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ +V+ ++ Y + + + Q +E +G +Y + L+RLRQA +HPLL
Sbjct: 637 SEQIIEVEMKKPQKQLYDNI-VEALQQSEE---SG---DSYGS----LMRLRQAANHPLL 685
Score = 75 (31.5 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 643 DGVLAVPLLR-------HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+G L +PLL+ +Q I + W++ L+ IL D+ GLGKTI +A +
Sbjct: 380 EGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNA---ILGDEMGLGKTIQIVAFL 433
Score = 64 (27.6 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 817
L+V P+S + W E S + +L Y+GS R + + DV++TTY+
Sbjct: 446 LIVVPSSTIENWIGEFHKWCPS---IQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYN 502
Query: 818 IVS 820
+V+
Sbjct: 503 MVT 505
Score = 41 (19.5 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 501 KKELDGVKEDMEAEIKT----RSMASHLLKLSPESIQSNSSDCKSHVDDEPDI 549
K+E +G +D E E T +S+ + + K E + SD + +DE D+
Sbjct: 211 KEESEGSGKDSETEEVTMKQGQSLKAAMAKAQKEQKKKAESD-EDWEEDEDDM 262
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 261 (96.9 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 56/147 (38%), Positives = 93/147 (63%)
Query: 1253 SIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1312
++ +K G++ ++FSQ+T MLD++E LK QY RLDG+ + R + +NT PE
Sbjct: 809 TLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPE 868
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ V ++S +A G+N+ +A V+L D+ NP + QA DR HR+GQTR V V++L K+
Sbjct: 869 IFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKD 928
Query: 1373 TVEDRILALQQKKREM---VASAFGED 1396
++ED +L + Q+K ++ + + GED
Sbjct: 929 SIEDCMLRVGQEKLKLEQDMTTDEGED 955
Score = 127 (49.8 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 52/193 (26%), Positives = 84/193 (43%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
V DE +KN + R + A+ R L+GTP+QN + +L S F+ F+ S
Sbjct: 577 VFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQ 636
Query: 954 CSMIKVPISKNPVKGYKK---LQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 1008
S + S + K QA ++K +LRR K +L LPPK+ ++
Sbjct: 637 ISKMFSTRSSEEESSFHKDRIAQARLIMKPFILRRVKSEVLK-----ELPPKMEKIEMCP 691
Query: 1009 FTDEERDFYSQLEINSRDQFKEYAAAGTV-KQNYVNILLMLLRLRQACDHPLLVKGF-DS 1066
+D + Y L FK K+ N+++ +LR+ +HPLL + + S
Sbjct: 692 MSDAQHKLYDIL-------FKRLKKTPNGDKRELCNVMM---QLRKMANHPLLHRQYYTS 741
Query: 1067 NSLLRSSVEMAKK 1079
+ L S M K+
Sbjct: 742 DKLAAMSKAMLKE 754
Score = 86 (35.3 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 620 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 679
D +++ M I QP S + L +Q I L W++ L GILAD+
Sbjct: 424 DVTQVIEAGMGSIKQPKVLNSN------LKLQAYQLIGLKWLILLHQHKL---SGILADE 474
Query: 680 QGLGKTISTIALI 692
GLGKTI IA +
Sbjct: 475 MGLGKTIQAIAFL 487
Score = 65 (27.9 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 801
G + ++ F+ + G L+ P+S L W EL S L VL+Y+GS +
Sbjct: 478 GKTIQAIAFLAHLYEKGIKGPHLITVPSSTLDNWVRELGLWCPS---LKVLIYYGSVEDR 534
Query: 802 DPCE------LAKFDVVITTYSI 818
L F+++++TY++
Sbjct: 535 KYLRQDILTGLIDFNIIVSTYNL 557
Score = 54 (24.1 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 1127 LTADDNQCPTRNCKIRLSLS-SVFSKATLNNSLSQRQPGQEIP-TDYSDSK 1175
LTA + P + L S SK+T NS +R+ G E+P D S S+
Sbjct: 259 LTAASSHVPEVSSMSALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSASE 309
Score = 42 (19.8 bits), Expect = 4.8e-27, Sum P(4) = 4.8e-27
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 677 ADDQ-GLGKTISTIALILKERPPSFRTEDDNKRQLET-LNLDEEDNGIQVNGLDLVKQES 734
AD Q GKT + + R D+ L+ +N D ED I++ + K +
Sbjct: 41 ADGQFPSGKTSRQVLEDVSSDDEVVRMGKDSASDLQQHINKDMEDKIIKLLEIFPQKSKK 100
Query: 735 DYCRVVPNGSS 745
D V+ N S+
Sbjct: 101 DLLEVIENTST 111
Score = 41 (19.5 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 17 DEFADDQGLSIDMDTLLGILEEEKQ 41
++F D GLSID+ ++ +E+Q
Sbjct: 381 EQFFKDNGLSIDLVHGCKVVLKERQ 405
Score = 39 (18.8 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 35/174 (20%), Positives = 67/174 (38%)
Query: 234 NVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDE 293
N ++ D + H I D+D + G D + + S+ + ++ +D
Sbjct: 108 NTSTLDGAVAHCLMIYGDEDSGGRK----DKGGRSDDDDQPKKKRKIQRSDSSESEDEDS 163
Query: 294 EGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAID---YLDAKRQCE-DSKNGL-PIYGN 348
E E + E + +L K K+P I+ D ++ + D +N L +
Sbjct: 164 EDEESEEPSREKQEALL-------KKLKRKLPDIEKEVLRDILKEHDWDYENALGSLLVF 216
Query: 349 SLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 402
S ++ + + ++S Q SHS K + + G+ L W T + S P
Sbjct: 217 SSTDTSSPENQKSKQKSKSSHSKEKTDK--ITQRPSGSSSLSR-WLTAASSHVP 267
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 265 (98.3 bits), Expect = 2.7e-31, Sum P(5) = 2.7e-31
Identities = 52/142 (36%), Positives = 84/142 (59%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1316
+K + +++ Q T+M+DL+E L +Y RLDG+ + R V ++ T PE+ V
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVF 1500
Query: 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376
++S +A LG+N+ AA V+ D WNP+ + QA+DRAHRIGQ + V+V R + T+E+
Sbjct: 1501 LLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEE 1560
Query: 1377 RILALQQKKREMVASAFGEDET 1398
RI+ ++K E+ ET
Sbjct: 1561 RIVIRAKEKEEVQKVVISGGET 1582
Score = 154 (59.3 bits), Expect = 2.7e-31, Sum P(5) = 2.7e-31
Identities = 50/191 (26%), Positives = 83/191 (43%)
Query: 888 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947
V W ++LDEAQ+IK+ + ++ + + R L+GTPIQN + +L++ F+ F
Sbjct: 969 VKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLF 1028
Query: 948 AVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
+ F I + K+L +LK MLRR K + L K
Sbjct: 1029 DSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQS-----ELGEK 1083
Query: 1001 VIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPL 1059
+ D T ++ Y L S + E A G +I+ ++++ R+ C+HP
Sbjct: 1084 IEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGG-DDTVASIMNLVMQFRKVCNHPD 1142
Query: 1060 LVKGFDSNSLL 1070
L + D S L
Sbjct: 1143 LFEREDVRSPL 1153
Score = 74 (31.1 bits), Expect = 2.7e-31, Sum P(5) = 2.7e-31
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 636 NA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
NA E P +L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 828 NAFEVKQPK-MLMCKLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVM 881
Score = 60 (26.2 bits), Expect = 2.7e-31, Sum P(5) = 2.7e-31
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 809
LV+ P S L W +E+ V L + Y GS TKD L KF
Sbjct: 895 LVIAPASTLHNWQQEITRFVPK---LKCIPYWGS--TKDRKILRKF 935
Score = 51 (23.0 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 22/63 (34%), Positives = 25/63 (39%)
Query: 410 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQ---NQVVHAKEEHEDLILESKRARFC-QEI 465
N S PF S F+ SP L Q N VVH +E E K + C QE
Sbjct: 1225 NDSIKSNPEGSPF--SWLRFVDESPQTLFQTFQNPVVHYLDEAE-ASSSLKEEQLCRQEF 1281
Query: 466 CDG 468
C G
Sbjct: 1282 CYG 1284
Score = 48 (22.0 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 1197 EVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDS 1256
++ + +P NTV+ H+ R + S+ P ++++ D ++ DE+ A S S
Sbjct: 167 DLYNMVPRPDANTVSPHAARSA--SSLPVPKEASETPFRDASTDLFDEHAHAAPMHSSIS 224
Query: 1257 I 1257
I
Sbjct: 225 I 225
Score = 47 (21.6 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 25/96 (26%), Positives = 37/96 (38%)
Query: 124 ESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHID-SRSV 182
E GI PG +T+ F Y+ ++ N ++ I+ GS R V
Sbjct: 1191 EQGGI--LSVPGLNTSRGFETKYLYNLMNIWNP-EY----TNDSIKSNPEGSPFSWLRFV 1243
Query: 183 DASPSSITENFDERYGHYGASIGNRLGSSVPEGNLC 218
D SP ++ + F HY SS+ E LC
Sbjct: 1244 DESPQTLFQTFQNPVVHYLDEA--EASSSLKEEQLC 1277
Score = 41 (19.5 bits), Expect = 2.7e-31, Sum P(5) = 2.7e-31
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 432 LSPSLLSQNQVVHAKEEHE 450
LSP+ SQ+Q+ H + +H+
Sbjct: 271 LSPNS-SQSQITHNRRKHK 288
Score = 40 (19.1 bits), Expect = 8.3e-20, Sum P(5) = 8.3e-20
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 810 DVVITTYSIVSMEVPKQPL 828
D++I ++ + +P++PL
Sbjct: 1384 DLIINNQAVSKLPIPRKPL 1402
Score = 38 (18.4 bits), Expect = 5.4e-31, Sum P(5) = 5.4e-31
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 227 DAEVSSHNVASTD-STICHGSEIISDDD 253
+A ++ V + D S + E++SDDD
Sbjct: 292 NATTNNSVVLTPDTSPLLDSDEVVSDDD 319
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 223 (83.6 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 55/166 (33%), Positives = 88/166 (53%)
Query: 1227 GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK--AIVFSQWTKMLDLLEASLKDS 1284
G D++ LD I + K+ + ++L K ++FSQ +MLD+L L
Sbjct: 920 GYGGDINDNSKLDKIILSSGKLVILDKL-LVRLRETKHRVLIFSQMVRMLDILAEYLSLR 978
Query: 1285 SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1343
Q++RLDG+ R +A+ FN + ++S +A LG+N+ A V++ D WN
Sbjct: 979 GFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWN 1038
Query: 1344 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
P + QA+ RAHRIGQ V++ R +VE+ IL ++ KR+MV
Sbjct: 1039 PQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEIL--ERAKRKMV 1082
Score = 184 (69.8 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L+K+ W +++DEA +KN Q+ A K + ++GTP+QN++++L++ FL
Sbjct: 749 LSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 808
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F K S N + L L+ +LRR + D E +LPPK+ +
Sbjct: 809 GKFKNKDEFVENYKNLSSFNESE-LANLHLELRPHILRRV---IKDVEK--SLPPKIERI 862
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ + ++ +Y LE N D K G V+ N V++L +++ L++ C+HP L +
Sbjct: 863 LRVEMSPLQKQYYKWILERNFHDLNK-----G-VRGNQVSLLNIVVELKKCCNHPFLFES 916
Query: 1064 FD 1065
D
Sbjct: 917 AD 918
Score = 77 (32.2 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 745 SAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 804
S F++ + P LVV P S L WA+E R + ++++VY G+ +++ C
Sbjct: 660 SVSMLGFLQNTQQIPGP-FLVVVPLSTLANWAKEFRKWLPG---MNIIVYVGTRASREVC 715
Query: 805 EL------------AKFDVVITTYSIV 819
+ KF+ ++TTY +V
Sbjct: 716 QQYEFYNEKKVGRPIKFNALLTTYEVV 742
Score = 67 (28.6 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 616 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 675
S A +++ Q +G + P+ ++ L +Q L+++V S L+ + I
Sbjct: 591 SIAVQGKMVEQQRTKGKASLRKLDEQPEWLIGGTLRDYQLEGLNFLVN---SWLNDTNVI 647
Query: 676 LADDQGLGKTISTIALI 692
LAD+ GLGKT+ +++++
Sbjct: 648 LADEMGLGKTVQSVSML 664
Score = 49 (22.3 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 664 KETSSLHCSGGILADDQGLG---KTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720
K S LHC L+D Q L K ++ + +E +RT ++ ++E ++ +E +
Sbjct: 469 KGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVTEEI--RYRTAL-SREEIEVNDVSKEMD 525
Query: 721 GIQVNGLDLVKQESDYCRVV 740
LD++KQ S R++
Sbjct: 526 ------LDIIKQNSQVERII 539
Score = 49 (22.3 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 29/129 (22%), Positives = 56/129 (43%)
Query: 1125 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQ-EIPTD--YSDS--KLVEA 1179
E ++DN R+ K+ + +N +++ Q GQ ++P D SD + E
Sbjct: 126 EAYHSEDNHSNDRSEKLDSENENDNENEEEDNEMNKHQSGQADVPADEMLSDEYYEQDED 185
Query: 1180 PSCEGVWYNS-SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT- 1237
+ V Y S + + ++ + N+ T+ ++ + + S DSN H GD
Sbjct: 186 NQSDHVHYKGYSNPTNSRSLPKAGSAVHSNSRTSRAIHKNIHYS-----DSNHDHNGDAD 240
Query: 1238 LDNISDENE 1246
+D +E+E
Sbjct: 241 MDYEEEEDE 249
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 277 (102.6 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 58/160 (36%), Positives = 94/160 (58%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 845 MDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 904
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 905 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 964
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397
GQT+ V V++L + T+E+ +L + Q+K ++ DE
Sbjct: 965 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE 1004
Score = 119 (46.9 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 45/196 (22%), Positives = 94/196 (47%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A+ R L+GTP+QN + +L S F+ F+
Sbjct: 624 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 683
Query: 949 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 1005
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 684 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----LLPPKKDQIE 737
Query: 1006 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
++++ YS L N + K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 738 LCAMSEKQEQLYSGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYY 790
Query: 1066 SNSLLRSSVEMAKKLP 1081
+ L+ ++ K P
Sbjct: 791 TAEKLKEMSQLMLKEP 806
Score = 83 (34.3 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 492 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 534
Score = 57 (25.1 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 817
L+V P S + W E+ + L+VL Y+GS + ++V++TTY+
Sbjct: 547 LIVVPASTIDNWLREVNLWCPT---LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 603
Score = 38 (18.4 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1200 QSLAKPRGNT--VTNHSLRHSFN 1220
QSL KPRG+ +N S S N
Sbjct: 225 QSLKKPRGDRREESNESAEASSN 247
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 178 (67.7 bits), Expect = 3.4e-31, Sum P(5) = 3.4e-31
Identities = 68/230 (29%), Positives = 111/230 (48%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL K+ W+RV LDEAQ I++ + A+ + W ++GTP++ + DL FLR
Sbjct: 409 PLIKISWWRVCLDEAQMIESGISNAAKVARLIPRHIAWAVTGTPLRKDVTDLLGLLLFLR 468
Query: 944 YDPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 1001
Y+PF ++K C P+ L ++ TI LR +K + + ++LPP+
Sbjct: 469 YEPFCGPIWKRLCDATFKPV----------LARIVNTITLRHSKNFIREE---LHLPPQK 515
Query: 1002 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYVN------ILLM---LLRL 1051
++ V FT E Y QL E D + ++G+ + N N I M L+RL
Sbjct: 516 RIVITVPFTAVEEQSYRQLYEEMCEDCGLD--SSGSPRNNDWNPNDPSVIDRMRSWLVRL 573
Query: 1052 RQACDHPL--LVKGFDS-NSLLRSSVEMAKKLPQERQMYLLNCLEASLAI 1098
RQ+C +P K F + N LRS ++ + + + L++ E SL +
Sbjct: 574 RQSCLYPTGNRRKVFAAGNGPLRSVNDVLEVMIDQNDA-LIHAEERSLLL 622
Score = 170 (64.9 bits), Expect = 3.4e-31, Sum P(5) = 3.4e-31
Identities = 46/126 (36%), Positives = 65/126 (51%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G ++IVFSQ+ LD L + + I Y +D + + +K KD P + ++
Sbjct: 1185 GAQSIVFSQYKGFLDYLANAFRRFKIGYSSVDESDGI---EKFKKD----PGIECFLLHA 1237
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA S GLN+V A HV L + N E QAI R HRIGQ RP +V + +TVE I
Sbjct: 1238 KAHSSGLNLVNATHVFLCEPLINTAIELQAIARVHRIGQHRPTTVWMYLISDTVEKSIYD 1297
Query: 1381 LQQKKR 1386
+ +R
Sbjct: 1298 ISVSRR 1303
Score = 90 (36.7 bits), Expect = 3.4e-31, Sum P(5) = 3.4e-31
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 758 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR--TKDPCELAKF----DV 811
RP+ TL++ P +L QW +E+ L V Y G R T EL + DV
Sbjct: 318 RPSGATLIITPPVILGQWKQEIELHAPK---LQVFHYTGIQRHPTLSDQELVELMADNDV 374
Query: 812 VITTYSIVSMEV 823
V+TTY++++ E+
Sbjct: 375 VLTTYNVLAREI 386
Score = 82 (33.9 bits), Expect = 3.4e-31, Sum P(5) = 3.4e-31
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 1098 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ-CPTRNCKIRLSLSSVF 1149
IC IC E V+++CGH +C C+ RL ++ CP CK RL + +
Sbjct: 1066 ICIICQGTFEIGVLTVCGHKYCKDCL--RLWWRQHRTCPV--CKKRLGANDFY 1114
Score = 74 (31.1 bits), Expect = 3.4e-31, Sum P(5) = 3.4e-31
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 670 HCSGGILADDQGLGKTISTIALILKER 696
H GG+LA++ GLGKT+ I+L+ R
Sbjct: 274 HLKGGVLAEEMGLGKTVEMISLMCLNR 300
Score = 40 (19.1 bits), Expect = 9.5e-28, Sum P(5) = 9.5e-28
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 20 ADDQGL--SIDMDTLLGILEEEKQPDRVKSSPGDLSLR 55
A++ GL +++M +L+ + +P+ + PG LR
Sbjct: 281 AEEMGLGKTVEMISLMCLNRRILRPEETFAEPGSNGLR 318
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 223 (83.6 bits), Expect = 3.5e-31, Sum P(5) = 3.5e-31
Identities = 42/118 (35%), Positives = 73/118 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 855 GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTT 914
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 915 RVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Score = 166 (63.5 bits), Expect = 3.5e-31, Sum P(5) = 3.5e-31
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 694
Query: 945 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 992
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 695 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 751
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
++LP K + TDE+ Y ++S++ ++ + + I L+ LR
Sbjct: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-VDSKEVYR-------ILNGEMQIFSGLIALR 803
Query: 1053 QACDHPLLVKGFDSN 1067
+ C+HP L G N
Sbjct: 804 KICNHPDLFSGGPKN 818
Score = 97 (39.2 bits), Expect = 3.5e-31, Sum P(5) = 3.5e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 501 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 555
Query: 702 TEDDNKR 708
T N R
Sbjct: 556 TRGSNYR 562
Score = 65 (27.9 bits), Expect = 3.5e-31, Sum P(5) = 3.5e-31
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 816
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 569 TVIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTHKKEKLIRDVAHCHGILITSY 625
Query: 817 SIVSM 821
S + +
Sbjct: 626 SYIRL 630
Score = 42 (19.8 bits), Expect = 3.5e-31, Sum P(5) = 3.5e-31
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 37 EEEKQPDRVKSSPGDLS 53
EEE++ D V+ + DLS
Sbjct: 380 EEEEEDDEVEGAEADLS 396
Score = 38 (18.4 bits), Expect = 9.0e-31, Sum P(5) = 9.0e-31
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 489 QYFPYAQPSTLNKKELDGVKEDMEAE 514
+YFP + E++G + D+ +
Sbjct: 373 EYFPTEEEEEEEDDEVEGAEADLSGD 398
Score = 38 (18.4 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 25 LSIDMDTLLGILEEEK---QPDRVKSSPGDLSLRNLSQDELVQD 65
L+ +M G++ K PD P +L + L DEL +D
Sbjct: 789 LNGEMQIFSGLIALRKICNHPDLFSGGPKNL--KGLPDDELEED 830
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 280 (103.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G K ++FSQ T +LD+L +Y RLDG+MS RD+ +K F++ PEV
Sbjct: 624 LPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEV 683
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ +A V++ D WNP + QA DR HRIGQT+PV V RL NT
Sbjct: 684 FLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANT 743
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRL 1405
++++IL KR++ +++ G + L
Sbjct: 744 IDEKILERASAKRKLEKMVIHKNKFKGSKAEL 775
Score = 121 (47.7 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 38/139 (27%), Positives = 66/139 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W +++DE IKN ++ + L + L+GTP+QN + +L+S FL
Sbjct: 353 LQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLP 412
Query: 945 DPFAVYKSFCSMIKVPI----SKNPVKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLP 998
D F KSF S + ++N V ++ Q +L + L T L L + + +P
Sbjct: 413 DVFDDLKSFESWFDISTITSDAENIVANERE-QNILHMLHLILTPFLLRRLKSDVTLEVP 471
Query: 999 PKVIMLKQVDFTDEERDFY 1017
PK ++ T+++ FY
Sbjct: 472 PKKEIVVYAPLTNKQEAFY 490
Score = 65 (27.9 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK 808
LVV P S L W E + + T + +SVL+YHG K+ +L K
Sbjct: 285 LVVAPLSTLPNWISEFK-RFTPE--VSVLLYHGPQ--KERLDLVK 324
Score = 64 (27.6 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 674 GILADDQGLGKTISTIALI 692
GILAD+ GLGKTI IA I
Sbjct: 254 GILADEMGLGKTIQCIAHI 272
Score = 52 (23.4 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 487 SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQSN 535
SR+ Y +P+T + K+L+ E ++ E+ +++ ++ ++ + P Q N
Sbjct: 524 SRKVVNYTEPNTDSMKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVN 573
Score = 46 (21.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 980 MLRRTKGTLLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGT 1036
ML LL G P+ N ++ L D D+ + F S +I++ E A
Sbjct: 382 MLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANE 441
Query: 1037 VKQNYVNILLMLL 1049
+QN +++L ++L
Sbjct: 442 REQNILHMLHLIL 454
Score = 45 (20.9 bits), Expect = 2.0e-23, Sum P(5) = 2.0e-23
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 999 PKVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNY-------VNILL--M 1047
PK K V++T+ D LE + Q + A+ T N VN+ L +
Sbjct: 520 PKRRSRKVVNYTEPNTDSMKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVNLKLQNI 579
Query: 1048 LLRLRQACDHPLLVK 1062
L+ L++ C+H L++
Sbjct: 580 LMLLKRCCNHAYLIE 594
Score = 42 (19.8 bits), Expect = 4.0e-31, Sum P(5) = 4.0e-31
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 530 ESIQSNSSDC-KSHVDDEPDICILEDISQPARSNQSLVLGKTL 571
E +S S C K + +EP+ +E+ + ++ +V+ K +
Sbjct: 7 EETRSISPHCPKPNESEEPEGTTIEETTMEKSKHEEMVITKEM 49
Score = 42 (19.8 bits), Expect = 2.2e-06, Sum P(5) = 2.2e-06
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1318 MSLKAASLGLNMVAAC-HVLLLDLWWNPTTEDQAID 1352
++LK ++ + + C H L++ +PTT D ID
Sbjct: 572 VNLKLQNILMLLKRCCNHAYLIEYPLDPTTGDFKID 607
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 252 (93.8 bits), Expect = 4.3e-31, Sum P(5) = 4.3e-31
Identities = 58/155 (37%), Positives = 90/155 (58%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+A+VF Q +MLD++++ + S+Q+ RLDG + R V FN+ P V++++
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLT 1746
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL + T+E++IL
Sbjct: 1747 TSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKIL 1806
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K + VAS + G T + D L LF
Sbjct: 1807 NLQRFKID-VASTVVNQQNAGLNT-MDTDQLLDLF 1839
Score = 170 (64.9 bits), Expect = 4.3e-31, Sum P(5) = 4.3e-31
Identities = 65/237 (27%), Positives = 104/237 (43%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VLDE IKN + +V A + + R LSGTPIQN + +L+S F FL
Sbjct: 1443 LRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMP 1502
Query: 945 DPFAVYKSFCSMIKVPI--------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEP 993
K F PI SK G ++A+ K ++ LRR K +L+
Sbjct: 1503 GFLGTEKVFLDRFAKPIATSRFSKSSKEQEAGALAIEALHKQVLPFLLRRLKEEVLN--- 1559
Query: 994 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 1053
+LPPK+I D ++ ++ + + +E + K + +I L +R+
Sbjct: 1560 --DLPPKIIQNYYCDPSELQKKLFEDFTKKEQKALQEKMGSSE-KADKEHIFQALQYMRR 1616
Query: 1054 ACDHPLLV--KGFDSNSLLRSSVEMAKK-LPQERQMYLLNCLEASLAICGICNDPPE 1107
C+ P LV +G + ++ ++ K L L+ L+ L CGI +P E
Sbjct: 1617 LCNSPALVVKEGHKQYNEVQQYLQEKKSYLRDVSHAPKLSALKDLLLDCGIGVEPTE 1673
Score = 93 (37.8 bits), Expect = 4.3e-31, Sum P(5) = 4.3e-31
Identities = 34/109 (31%), Positives = 49/109 (44%)
Query: 602 GYPGVPLTGLGGMKSKASD-ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSW 660
G P P GL + D ER + + S+ E P + A L +Q+ ++W
Sbjct: 1274 GIPDPP--GLSEKLLEGRDRERKFMSQMLD--SRKVEEFKLPVAIKA-ELRPYQQEGVNW 1328
Query: 661 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQ 709
+ +LH GIL DD GLGKT+ TI ++ + R ED K Q
Sbjct: 1329 LAFLNRYNLH---GILCDDMGLGKTLQTICIVASDH--HMRAEDFAKTQ 1372
Score = 84 (34.6 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 720 NGIQVNGLDLVKQESDYCRVVPNGSS-AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 778
+GI + + L K C V + A+ F ++ + R +L++CP S+ W +E
Sbjct: 1338 HGILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKVP-SLIICPPSLSGHWQQE 1396
Query: 779 LRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSI 818
++ L+ + Y G + R+K LA D+V+T+Y I
Sbjct: 1397 VKQYAPF---LNCVAYVGPPAERSKLQGSLADADIVVTSYDI 1435
Score = 45 (20.9 bits), Expect = 4.3e-31, Sum P(5) = 4.3e-31
Identities = 20/94 (21%), Positives = 34/94 (36%)
Query: 426 GQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLN 485
G F L L ++ +K +E + F +E D R +N
Sbjct: 910 GPDFEKLKRLLSPAQRITASKVLNETRVTAENAINFAKEARDTRDMRIKAAAAGALINFG 969
Query: 486 GSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRS 519
P +P L K ++ +K + AE++ RS
Sbjct: 970 A----IP-KKPGNLIKGVMESIKTEESAELQQRS 998
Score = 43 (20.2 bits), Expect = 1.5e-13, Sum P(4) = 1.5e-13
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 987 TLLDGEPI-INLP-PKVIMLKQVDFTDEERDFYSQLEINSR--DQFK 1029
TL+ P+ +P P + K ++ D ER F SQ+ ++SR ++FK
Sbjct: 1264 TLVKLVPLEAGIPDPPGLSEKLLEGRDRERKFMSQM-LDSRKVEEFK 1309
Score = 37 (18.1 bits), Expect = 4.3e-31, Sum P(5) = 4.3e-31
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 91 SQLEPTEQKCSPLQTCSAS 109
S ++P K SP T S++
Sbjct: 706 SMVQPAPAKASPTSTTSST 724
Score = 37 (18.1 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 438 SQNQVVHAKEEHEDLILESKRARFCQEICDGSS 470
S+ +EHE LIL ++ +E D ++
Sbjct: 1034 SETPEFERNKEHEGLILSLRKEEDRREHADAAT 1066
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 223 (83.6 bits), Expect = 4.5e-31, Sum P(5) = 4.5e-31
Identities = 53/184 (28%), Positives = 92/184 (50%)
Query: 1196 LEVLQSLAKPRGNTVTNHSLRHSFNGSIC-CPGDSNDLHGGDTLDNISDENEKIAAKCSI 1254
++V L R + NH S I C D+ DL D + I + +
Sbjct: 788 MQVFSGLVALR--KICNHPDLFSGGPKILKCVPDA-DLEEADQFGYWKRSGKMIVVESLL 844
Query: 1255 DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1314
G + + F+Q +ML +LE L+D + Y R+DGT ++ +R + +N +
Sbjct: 845 KIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNEDKSIF 904
Query: 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374
+ +++ + +G+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+
Sbjct: 905 IFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 964
Query: 1375 EDRI 1378
E++I
Sbjct: 965 EEKI 968
Score = 164 (62.8 bits), Expect = 4.5e-31, Sum P(5) = 4.5e-31
Identities = 54/186 (29%), Positives = 84/186 (45%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGT 694
Query: 950 YKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGEPIINL 997
F VPI+ +PV+ YK L+ + +LRR K D + ++L
Sbjct: 695 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKA---DVKMSLSL 751
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
P K + TDE+R Y I+S++ ++ + + + L+ LR+ C+H
Sbjct: 752 PDKNEQVLFCRLTDEQRQVYQNF-IDSKEVYQ-------ILNGDMQVFSGLVALRKICNH 803
Query: 1058 PLLVKG 1063
P L G
Sbjct: 804 PDLFSG 809
Score = 97 (39.2 bits), Expect = 4.5e-31, Sum P(5) = 4.5e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 496 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 550
Query: 702 TEDDNKR 708
T N R
Sbjct: 551 TRGSNYR 557
Score = 64 (27.6 bits), Expect = 4.5e-31, Sum P(5) = 4.5e-31
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS---SRTKDPCELAK-FDVVITTY 816
T++VCP +V+ QW +E T V + H GS + K E+A ++IT+Y
Sbjct: 564 TVIVCPATVMHQWVKEFH---TWWPPFRVAILHETGSYTNKKVKLIREIASCHGILITSY 620
Query: 817 SIVSM 821
S + +
Sbjct: 621 SYIRL 625
Score = 44 (20.5 bits), Expect = 4.5e-31, Sum P(5) = 4.5e-31
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 527 LSPESIQSNSSDCKSHVDDEPD 548
L PE+++ SH +++ D
Sbjct: 381 LEPEAVEEEEEQASSHAENDSD 402
Score = 44 (20.5 bits), Expect = 7.1e-13, Sum P(5) = 7.1e-13
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 1192 IKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG-DTLDNISDENEKIAA 1250
+K L + +S + + ++H RH N S S + G +T D S +
Sbjct: 1045 LKGGLHLKKSSSPKYSKSSSSHLTRHRANSSEAIE-TSEEAKGNLETFDQNSYAKDNAET 1103
Query: 1251 KCSIDSIKLGGEKAI 1265
I+S+ ++++
Sbjct: 1104 ATDINSVNKSKQESL 1118
Score = 43 (20.2 bits), Expect = 5.7e-31, Sum P(5) = 5.7e-31
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 37 EEEKQPDRVKSSPGDLSLRNLS 58
EEE+Q + D LRNLS
Sbjct: 388 EEEEQASSHAENDSDYELRNLS 409
Score = 37 (18.1 bits), Expect = 2.3e-30, Sum P(5) = 2.3e-30
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 26 SIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQ-LQSEISGAESG 84
++ + + GI +E+K + K PG + + + V D H + ++ E A S
Sbjct: 341 ALQVHSKAGIPKEKKNLETTKLKPGQKD--DSGESDYVPD--EHLEPEAVEEEEEQASSH 396
Query: 85 GLGDSSSQL 93
DS +L
Sbjct: 397 AENDSDYEL 405
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 267 (99.0 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 55/150 (36%), Positives = 90/150 (60%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ IK G++ ++FSQ+T MLD++E L+ +Y RLDG + R + +FNT ++
Sbjct: 840 LSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDI 899
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S KA LG+N+ +A V+L D+ NP + QA DR HR+GQT+ V V++L K T
Sbjct: 900 FIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGT 959
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQT 1403
+E+ +L + Q+K + D TG + T
Sbjct: 960 IEESMLKISQQKLRLEQDMTTND-TGDEGT 988
Score = 126 (49.4 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 50/195 (25%), Positives = 86/195 (44%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
V DE +KN + L A+ R L+GTP+QN + +L S F+ F+
Sbjct: 603 VFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 662
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K + + + A ++K +LRR K +L LPPK +K
Sbjct: 663 IKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKSEVLK-----QLPPKQDKIKF 717
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
+ ++ YS L +N + K+ A N+++ LR+ +HPLL + + +
Sbjct: 718 CQMSKKQEQLYSDL-LN---KLKKSIDATEKNSELCNVMM---HLRKMANHPLLHRQYYT 770
Query: 1067 NSLLRSSVEMAKKLP 1081
LR+ ++ K P
Sbjct: 771 ADRLRTMSKLMLKEP 785
Score = 72 (30.4 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q+I L+W+ ++ ILAD+ GLGKT+ IA +
Sbjct: 477 YQKIGLNWLALLHKHKVNM---ILADEMGLGKTVQAIAFL 513
Score = 69 (29.3 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 817
LVV P S + W E S +++L+Y+GS + ++ +F+V++TTY+
Sbjct: 526 LVVVPASTMDNWIREFNQWCPS---MNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
Score = 37 (18.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 1144 SLSSVFSKATLNNSLSQ 1160
S S+F K T +N LS+
Sbjct: 399 SWESLFEKMTKSNGLSE 415
Score = 37 (18.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 1195 ALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSND 1231
ALE L+ A+ + + N + + NG + ND
Sbjct: 255 ALEALKLFAEDETDALQNAAKKEVSNGKEFSRSNKND 291
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 277 (102.6 bits), Expect = 5.6e-31, Sum P(4) = 5.6e-31
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 849 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 908
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 909 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 968
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1408
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 969 GQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDE--GDEGSMPAD 1017
Score = 117 (46.2 bits), Expect = 5.6e-31, Sum P(4) = 5.6e-31
Identities = 43/196 (21%), Positives = 93/196 (47%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 628 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 687
Query: 949 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 1005
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 688 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIE 741
Query: 1006 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
++++ Y +N ++ K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 742 LCAMSEKQEQLY----MNLFNRLKK--SINNMEKN-TEMCNVMMQLRKMANHPLLHRQYY 794
Query: 1066 SNSLLRSSVEMAKKLP 1081
+ L+ ++ K P
Sbjct: 795 TAEKLKEMSQLMLKEP 810
Score = 83 (34.3 bits), Expect = 5.6e-31, Sum P(4) = 5.6e-31
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 496 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 538
Score = 57 (25.1 bits), Expect = 5.6e-31, Sum P(4) = 5.6e-31
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + +++V++TTY+
Sbjct: 551 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 238 (88.8 bits), Expect = 7.7e-31, Sum P(5) = 7.7e-31
Identities = 50/126 (39%), Positives = 73/126 (57%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G + ++F+Q TK+LD+LE L +Y RLDG + R + FN ++ V I+S
Sbjct: 1007 GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILST 1066
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
++ LG+N+ A V+ D WNP + QA DR+HRIGQTR V + RL + TVE +L
Sbjct: 1067 RSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLR 1126
Query: 1381 LQQKKR 1386
+KR
Sbjct: 1127 RANQKR 1132
Score = 153 (58.9 bits), Expect = 7.7e-31, Sum P(5) = 7.7e-31
Identities = 53/189 (28%), Positives = 87/189 (46%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL- 942
P + W ++LDEA +IKN R+Q ++ A+ R L+GTP+QN + +L+S FL
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLM 622
Query: 943 ------RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI-----MLRRTKGTLLDG 991
FA K F P+ + +G + T+ +LR L
Sbjct: 623 PAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKT 682
Query: 992 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRL 1051
E +P K + + +R Y IN R + +E A+G N+++I+ L++L
Sbjct: 683 EVEKQMPAKYEHVVYCQLSKRQRFLYDDF-IN-RARTREILASG----NFMSIINCLMQL 736
Query: 1052 RQACDHPLL 1060
R+ C+HP L
Sbjct: 737 RKVCNHPNL 745
Score = 99 (39.9 bits), Expect = 7.7e-31, Sum P(5) = 7.7e-31
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 615 KSKASDERLILQVAMQGISQ------PNAEASAPDGVLAVPLL------RHQRIALSWMV 662
K + +D+ L + ++ GIS+ PN + VP L +Q+ L W+
Sbjct: 400 KRRVNDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLT 459
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALI 692
S+ + GILAD+ GLGKTI TIAL+
Sbjct: 460 ALHDSN---TNGILADEMGLGKTIQTIALL 486
Score = 55 (24.4 bits), Expect = 7.7e-31, Sum P(5) = 7.7e-31
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPCELAKFD---VVITTYSI 818
L++ PTSV+ W E + + +L Y+G+ R + K D V IT+Y +
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLPG---FKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQL 556
Query: 819 V 819
V
Sbjct: 557 V 557
Score = 42 (19.8 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 551 ILEDISQPARSNQSLVLGKTLSM-N-----RSACSNHSVALGKPVVTS 592
+ +D AR+ + L G +S+ N R C++ ++ +P+VTS
Sbjct: 707 LYDDFINRARTREILASGNFMSIINCLMQLRKVCNHPNLHEERPIVTS 754
Score = 40 (19.1 bits), Expect = 7.7e-31, Sum P(5) = 7.7e-31
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 366 TYSHSHSSRTKQMVFAKDEGNDDL 389
TY S ++ + K EG+ DL
Sbjct: 2 TYEESEKNKNGLSSYIKKEGSSDL 25
Score = 38 (18.4 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 994 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQ 1027
+ +L +VI++K+ D TD ++ ++N DQ
Sbjct: 343 VSDLDGEVIVMKKEDITD---GVSTKKDLNDGDQ 373
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 1158 LSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1195
L + IP Y D+ L +N K++A+
Sbjct: 104 LKKAPSSNNIPISYRDNLLSHVNGYARSMHNDRKVRAS 141
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 289 (106.8 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 61/160 (38%), Positives = 95/160 (59%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K+ G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 608 LPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDV 667
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 668 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 728 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 766
Score = 117 (46.2 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 467
Query: 1005 KQVDFTDEERDFYSQL 1020
+ ++ FY+ +
Sbjct: 468 VYAPLSKKQEVFYTAI 483
Score = 68 (29.0 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 674 GILADDQGLGKT---ISTIALILKERPP 698
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRGVP 271
Score = 61 (26.5 bits), Expect = 5.4e-25, Sum P(4) = 5.4e-25
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 957 IKVPISKNPVKGY---KKLQAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 1007
++VP K V Y K Q V T ++ RT + + E + P PK K +
Sbjct: 458 LEVP-PKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVELSPTGRPKRRTRKSI 516
Query: 1008 DFTDEERDFYSQLE-INSRDQ---FKEYAAAGT--VKQNYVNILL--MLLRLRQACDHPL 1059
D++ + DF ++LE + S+ Q +E A T ++ VN+ L +++ LR+ C+HP
Sbjct: 517 DYSKID-DFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPY 575
Query: 1060 LVK 1062
L++
Sbjct: 576 LIE 578
Score = 51 (23.0 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 323
+ S+N ++S EE + K + E E +CS+ V + Q S++K
Sbjct: 133 EDESYNISEVMSKEEILSVAKKNKKETENESSCSNL-CVEDLQKNRDSNSIIK 184
Score = 51 (23.0 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 31/150 (20%), Positives = 62/150 (41%)
Query: 432 LSPSLLSQNQVVHAKE-EHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY 490
++P++L + + + A E E +LE R + +E D I R L L S Y
Sbjct: 26 ITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESVD-------IRYRRLQHLLEKSNIY 78
Query: 491 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC 550
+ + + +++L+ K+ + E K S+ K S ++ + N+ + E +
Sbjct: 79 SKFLL-TKMEQQQLEEQKKKEKLERKKESLKVTKGKNSIDASEENTVVMRKKRGREDESY 137
Query: 551 ILEDISQPARSNQSLVLGKTLSMNRSACSN 580
+ ++ K + N S+CSN
Sbjct: 138 NISEVMSKEEILSVAKKNKKETENESSCSN 167
Score = 48 (22.0 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 433 SPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFP 492
S LL++ + +E+ + LE K+ ++ G +S + + + R+
Sbjct: 79 SKFLLTKMEQQQLEEQKKKEKLERKKESL--KVTKGKNSIDASEENTVVMRKKRGREDES 136
Query: 493 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 545
Y ++K+E+ V + + E + S S+L E +Q N D S + D
Sbjct: 137 YNISEVMSKEEILSVAKKNKKETENESSCSNLCV---EDLQKNR-DSNSIIKD 185
Score = 45 (20.9 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 439
Query: 1045 LLMLL 1049
L +L
Sbjct: 440 LHQIL 444
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 239 (89.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1271
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 179 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 230
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1330
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 231 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 290
Query: 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 291 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 348
Query: 1391 SAFGEDETGGQQTRLTVDDLN 1411
D QQ RL +LN
Sbjct: 349 -----DSIVIQQGRLVDQNLN 364
Score = 193 (73.0 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 20 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 79
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 80 FNSADDFDSWFDTNNCLGDKKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 134
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 135 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 186
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 222 (83.2 bits), Expect = 1.1e-30, Sum P(4) = 1.1e-30
Identities = 51/144 (35%), Positives = 81/144 (56%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
GG + ++FSQ T MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLS 414
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 1380 ALQQKKREMVASAF-GEDETGGQQ 1402
K ++ G T G Q
Sbjct: 475 RKAASKLQLTNMVIEGGHFTPGAQ 498
Score = 140 (54.3 bits), Expect = 1.1e-30, Sum P(4) = 1.1e-30
Identities = 49/183 (26%), Positives = 79/183 (43%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L W + +DEA +KN + + R A R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEP 216
Query: 945 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
D F + F + I K K +L +L+ +LRR K + LP K
Sbjct: 217 DLFCREQVEDFVQRYQ-DIEKES-KSASELHRLLQPFLLRRVKAQVAT-----ELPKKTE 269
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++ + ++ +Y + + D F+ A QN +L +LR+ DHP L
Sbjct: 270 VVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQN------ILTQLRKCVDHPYLFD 323
Query: 1063 GFD 1065
G +
Sbjct: 324 GVE 326
Score = 94 (38.1 bits), Expect = 1.1e-30, Sum P(4) = 1.1e-30
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 693
G+ + L +Q ++W+VQ HC G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHCQNGCILGDEMGLGKTCQTIALLI 80
Score = 75 (31.5 bits), Expect = 1.1e-30, Sum P(4) = 1.1e-30
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 818
LV+CP SVL W EE+ + G LS + Y G + D + + F V++TTY I
Sbjct: 93 LVLCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
Score = 40 (19.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 432 LSPSLLSQNQVVHAKEEHEDLILESKRA 459
+ P L + QV + ++D+ ESK A
Sbjct: 214 VEPDLFCREQVEDFVQRYQDIEKESKSA 241
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 272 (100.8 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
Identities = 57/154 (37%), Positives = 93/154 (60%)
Query: 1244 ENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDK 1302
++ K+ C + K G++ +VFSQ+ +D+LE L++ +++ RLDGT SV R
Sbjct: 924 DSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQS 983
Query: 1303 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362
+ F+ ++ V ++S KA G+N+ A V++ D +NP + QA +RAHR+GQTR
Sbjct: 984 IMDTFHENTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTRE 1043
Query: 1363 VSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1396
V V+RL K+T+E++I AL Q K + + GED
Sbjct: 1044 VEVIRLVTKDTIEEQIYALGQTKLALDQAVAGED 1077
Score = 140 (54.3 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
Identities = 57/202 (28%), Positives = 96/202 (47%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS- 952
V DE +K+ + + +RA+ R L+GTP+QN + +L S F+ F K
Sbjct: 692 VYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVFQERKDD 751
Query: 953 ----FCSMIK-VPISKNPVKGYKKLQ---AVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F + K V S + + ++++ ++LK +LRR K +I+LP K+ +
Sbjct: 752 LQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKK------HQVIDLPAKISRV 805
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY-VNILLMLLRLRQACDHPLLVKG 1063
+ + +R+ Y E N + E AAG N NIL+ +LRQA HPLL +
Sbjct: 806 EYCEMNAAQREIYEH-EKNEVKKLLEDRAAGKKTGNKSANILM---KLRQAAIHPLLHRR 861
Query: 1064 FDSNSLLRSSVEMAKKLPQERQ 1085
++ +L +M+K QE +
Sbjct: 862 HYNDKIL---TKMSKACLQEEK 880
Score = 82 (33.9 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 609 TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLA--VPLLRHQRIALSWMVQKET 666
+G+G S+ SDE G A + G++A + + +Q + ++W+
Sbjct: 525 SGIGTPASQPSDE----DSDGPGSRSRKARFISQPGIMAEDLKMKNYQIVGINWLSLLFE 580
Query: 667 SSLHCSGGILADDQGLGKTISTIALI 692
+ L C ILADD GLGKT IA +
Sbjct: 581 NELSC---ILADDMGLGKTCQVIAFL 603
Score = 65 (27.9 bits), Expect = 8.2e-29, Sum P(4) = 8.2e-29
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 722 IQVNGLDLVKQESDYCRVVPN---GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAE 777
+ +N L L+ + C + + G + + F+ + G LVV P+S + W
Sbjct: 570 VGINWLSLLFENELSCILADDMGLGKTCQVIAFLAHLYEKGIKGPHLVVVPSSTIENWLR 629
Query: 778 ELRNKVTSKGSLSVLVYHGS----SRTKDPCELAKFD--VVITTYSIVSMEV 823
E + + LSV+ Y+ ++ ++ E + D VVITTY+I +V
Sbjct: 630 EFQKFCPT---LSVMPYYADQNVRAQIREQIEGNRDDINVVITTYTIAKGKV 678
Score = 47 (21.6 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 25/101 (24%), Positives = 43/101 (42%)
Query: 1070 LRSSVE-MAKKLPQERQMYLLNCLEASLAICGICNDPPE--DAVVSICGHVFCNQCICER 1126
+R VE M K LP++ + +C++A LA G D E + GH ++
Sbjct: 224 VRIKVERMLKVLPRKS---VHDCVQALLAKKGSYEDALECLASTEDQNGHADSSEDELST 280
Query: 1127 LTADDNQCPTR-NCKIRLSLSSVFSKATLNNSLSQRQPGQE 1166
+ P + N K R + ++ L S Q+QP ++
Sbjct: 281 IKKTSPVAPAKQNIKARGRIQDKWTAPNLPKSTLQKQPEED 321
Score = 38 (18.4 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 30 DTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDS 89
+TLL R+ + + S+ V V + S L+ S S G G
Sbjct: 42 NTLLATQSMTPSSQRLTQPTQIVDVPYTSKGSSVVQVAASSPLRPASSPSRPSPAGPGRL 101
Query: 90 SSQLEPTEQK-CSP 102
SS + P+ + C P
Sbjct: 102 SSLMAPSGTRFCPP 115
Score = 37 (18.1 bits), Expect = 1.9e-30, Sum P(4) = 1.9e-30
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 221 VDVPYTDAEVSSHNVAST 238
VDVPYT S VA++
Sbjct: 64 VDVPYTSKGSSVVQVAAS 81
Score = 37 (18.1 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 72 LQLQS-EISGAESGGLGDSSSQLEPTEQ 98
L L S E SG+ G+G +SQ P+++
Sbjct: 512 LDLVSMEPSGSHDSGIGTPASQ--PSDE 537
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 271 (100.5 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 61/166 (36%), Positives = 92/166 (55%)
Query: 1246 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVK 1305
EK+ +KC K G K ++F+Q+ KMLD+LE L + + RLDG+ V R K V
Sbjct: 1774 EKLLSKC-----KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVT 1828
Query: 1306 DFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365
FN + + I S ++ S+G+N+ AA V+ D WNP+ + QA+DR HRIGQT+ V V
Sbjct: 1829 KFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHV 1888
Query: 1366 LRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQQTRLTVDD 1409
R + TVE+ I Q +KR++ + G +++T D
Sbjct: 1889 FRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 149 (57.5 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWG--LRAKRRWCL--SGTPIQNAIDDLYSYFRFLRYD 945
W ++LDEA +IKN T+ R W L KR CL +GTP+QN++++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTK--R--WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPN 839
Query: 946 PFAVYKSFCSMIKVP----ISKNPVKGYK----KLQAVLKTIMLRRTKGTLLDGEPIINL 997
F + F P I K+ + K +L V++ +LRR K + + E +
Sbjct: 840 IFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNV-EKE----M 894
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
P K + + T ++ Y + IN+++ + G NY+ ++ +L++LR+ C+H
Sbjct: 895 PNKYEHIIKCKLTRRQQILYDEF-INNKN-VQNTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 76 (31.8 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q L W++ ++++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
LV+ PTS+L W EL+ +L Y+G+ + + F + I++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCPC---FKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 819 V 819
V
Sbjct: 772 V 772
Score = 48 (22.0 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1211 TNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSI 1257
T+H+ S + SI ++ND GGD +NI +++ K +SI
Sbjct: 305 TSHNDEKSGDNSIGEDDNNNDEKGGD--NNIDEDDNNNDEKSGDNSI 349
Score = 47 (21.6 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 21/81 (25%), Positives = 31/81 (38%)
Query: 175 SHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHN 234
SH D +S D S N DE+ G + + G+ D D + +N
Sbjct: 306 SHNDEKSGDNSIGEDDNNNDEKGGDNNIDEDDN-NNDEKSGDNSIGEDDNNNDHKSGDNN 364
Query: 235 VASTDSTICHGSE--IISDDD 253
+ D+ H SE I +DD
Sbjct: 365 IDEDDNNNDHKSEDNSIGEDD 385
Score = 44 (20.5 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 1004 LKQVDFTD-EERDFYSQLEINSRDQ 1027
LK+ D TD EE D+ +++S D+
Sbjct: 228 LKEDDLTDQEEEDYLLDEQMSSTDE 252
Score = 43 (20.2 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 704 DDNKRQLETLN-LDEEDN-GIQ--VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRP 759
D+++ + E +N LD+E N I+ + + K DY + N A N +E +
Sbjct: 251 DESENKEEEINMLDDEANLPIEELLKRMYGFKSGEDYINFMENEDDANEENVIETSHNDE 310
Query: 760 AAG 762
+G
Sbjct: 311 KSG 313
Score = 42 (19.8 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 1246
N++ S + SI ++ND GGD +NI DEN+
Sbjct: 370 NNNDHKSEDNSIGEDDNNNDEKGGD--NNI-DEND 401
Score = 41 (19.5 bits), Expect = 6.2e-30, Sum P(6) = 6.2e-30
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 339 SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSD 398
S N I N+ S++ GD + T + + + DE + + + D
Sbjct: 207 SNNNSEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEI-NMLDD 265
Query: 399 SVE-PIDEAVGRNSSYHDGCNSFPFKDS 425
PI+E + R + G + F ++
Sbjct: 266 EANLPIEELLKRMYGFKSGEDYINFMEN 293
Score = 41 (19.5 bits), Expect = 2.0e-26, Sum P(6) = 2.0e-26
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 703 EDDNKRQLET--LNLDEEDN 720
EDDN ++ N+DE+DN
Sbjct: 351 EDDNNNDHKSGDNNIDEDDN 370
Score = 41 (19.5 bits), Expect = 3.6e-20, Sum P(5) = 3.6e-20
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 1011 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 1043
DEE+D ++NS Y QN+++
Sbjct: 1636 DEEKDNCDDEDMNSNLSSNVYGCIDISSQNFIH 1668
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 1103 NDPPEDAVV--SICGHVFCNQCICERLTADDNQ---CPTRNCKIRLSLSSVF 1149
N+PPED+ V V C E+ DD + C + LS S+V+
Sbjct: 1606 NNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLS-SNVY 1656
Score = 40 (19.1 bits), Expect = 8.9e-16, Sum P(3) = 8.9e-16
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 141 SFSEGDGYHFLDHRN 155
S + YH +DH N
Sbjct: 1111 SHERDNNYHMMDHNN 1125
Score = 39 (18.8 bits), Expect = 3.2e-26, Sum P(6) = 3.2e-26
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 703 EDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 735
EDDN + E ++ E+DN G D E+D
Sbjct: 367 EDDNNNDHKSEDNSIGEDDNNNDEKGGDNNIDEND 401
Score = 38 (18.4 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 703 EDDNK--RQLETLNLDEEDN 720
E+DN + E N+DE DN
Sbjct: 399 ENDNNSDHKSEDNNIDENDN 418
Score = 38 (18.4 bits), Expect = 3.5e-16, Sum P(3) = 3.5e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 530 ESIQSNSSD-----C---KSHVDDEP-DICILEDISQPARSN 562
E + NSSD C K + DDE D C ED++ SN
Sbjct: 1613 EVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLSSN 1654
Score = 38 (18.4 bits), Expect = 3.9e-15, Sum P(4) = 3.9e-15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1202 LAKPRGNTVTNHSLRHSFN-GSICCPGDSNDLHGGDTLDNISDEN 1245
+AK + ++ N+S + N + D+ND + D D+ +D+N
Sbjct: 571 IAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDN 615
Score = 37 (18.1 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 675 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720
I+ D+ L +T I K +P S +N + N + DN
Sbjct: 559 IIKDEYNLRRT-----KIAKSKPSSDNNNSENDNNNDNNNDNNNDN 599
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 610 DNNDDNNDDNNDDNNDDN 627
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 606 DNNDDNNDDNNDDNNDDN 623
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 602 DNNDDNNDDNNDDNNDDN 619
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 271 (100.5 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 61/166 (36%), Positives = 92/166 (55%)
Query: 1246 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVK 1305
EK+ +KC K G K ++F+Q+ KMLD+LE L + + RLDG+ V R K V
Sbjct: 1774 EKLLSKC-----KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVT 1828
Query: 1306 DFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365
FN + + I S ++ S+G+N+ AA V+ D WNP+ + QA+DR HRIGQT+ V V
Sbjct: 1829 KFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHV 1888
Query: 1366 LRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQQTRLTVDD 1409
R + TVE+ I Q +KR++ + G +++T D
Sbjct: 1889 FRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 149 (57.5 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWG--LRAKRRWCL--SGTPIQNAIDDLYSYFRFLRYD 945
W ++LDEA +IKN T+ R W L KR CL +GTP+QN++++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTK--R--WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPN 839
Query: 946 PFAVYKSFCSMIKVP----ISKNPVKGYK----KLQAVLKTIMLRRTKGTLLDGEPIINL 997
F + F P I K+ + K +L V++ +LRR K + + E +
Sbjct: 840 IFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNV-EKE----M 894
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
P K + + T ++ Y + IN+++ + G NY+ ++ +L++LR+ C+H
Sbjct: 895 PNKYEHIIKCKLTRRQQILYDEF-INNKN-VQNTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 76 (31.8 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q L W++ ++++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 818
LV+ PTS+L W EL+ +L Y+G+ + + F + I++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCPC---FKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 819 V 819
V
Sbjct: 772 V 772
Score = 48 (22.0 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1211 TNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSI 1257
T+H+ S + SI ++ND GGD +NI +++ K +SI
Sbjct: 305 TSHNDEKSGDNSIGEDDNNNDEKGGD--NNIDEDDNNNDEKSGDNSI 349
Score = 47 (21.6 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 21/81 (25%), Positives = 31/81 (38%)
Query: 175 SHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHN 234
SH D +S D S N DE+ G + + G+ D D + +N
Sbjct: 306 SHNDEKSGDNSIGEDDNNNDEKGGDNNIDEDDN-NNDEKSGDNSIGEDDNNNDHKSGDNN 364
Query: 235 VASTDSTICHGSE--IISDDD 253
+ D+ H SE I +DD
Sbjct: 365 IDEDDNNNDHKSEDNSIGEDD 385
Score = 44 (20.5 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 1004 LKQVDFTD-EERDFYSQLEINSRDQ 1027
LK+ D TD EE D+ +++S D+
Sbjct: 228 LKEDDLTDQEEEDYLLDEQMSSTDE 252
Score = 43 (20.2 bits), Expect = 5.3e-27, Sum P(5) = 5.3e-27
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 704 DDNKRQLETLN-LDEEDN-GIQ--VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRP 759
D+++ + E +N LD+E N I+ + + K DY + N A N +E +
Sbjct: 251 DESENKEEEINMLDDEANLPIEELLKRMYGFKSGEDYINFMENEDDANEENVIETSHNDE 310
Query: 760 AAG 762
+G
Sbjct: 311 KSG 313
Score = 42 (19.8 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1212 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 1246
N++ S + SI ++ND GGD +NI DEN+
Sbjct: 370 NNNDHKSEDNSIGEDDNNNDEKGGD--NNI-DEND 401
Score = 41 (19.5 bits), Expect = 6.2e-30, Sum P(6) = 6.2e-30
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 339 SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSD 398
S N I N+ S++ GD + T + + + DE + + + D
Sbjct: 207 SNNNSEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEI-NMLDD 265
Query: 399 SVE-PIDEAVGRNSSYHDGCNSFPFKDS 425
PI+E + R + G + F ++
Sbjct: 266 EANLPIEELLKRMYGFKSGEDYINFMEN 293
Score = 41 (19.5 bits), Expect = 2.0e-26, Sum P(6) = 2.0e-26
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 703 EDDNKRQLET--LNLDEEDN 720
EDDN ++ N+DE+DN
Sbjct: 351 EDDNNNDHKSGDNNIDEDDN 370
Score = 41 (19.5 bits), Expect = 3.6e-20, Sum P(5) = 3.6e-20
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 1011 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 1043
DEE+D ++NS Y QN+++
Sbjct: 1636 DEEKDNCDDEDMNSNLSSNVYGCIDISSQNFIH 1668
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 1103 NDPPEDAVV--SICGHVFCNQCICERLTADDNQ---CPTRNCKIRLSLSSVF 1149
N+PPED+ V V C E+ DD + C + LS S+V+
Sbjct: 1606 NNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLS-SNVY 1656
Score = 40 (19.1 bits), Expect = 8.9e-16, Sum P(3) = 8.9e-16
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 141 SFSEGDGYHFLDHRN 155
S + YH +DH N
Sbjct: 1111 SHERDNNYHMMDHNN 1125
Score = 39 (18.8 bits), Expect = 3.2e-26, Sum P(6) = 3.2e-26
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 703 EDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 735
EDDN + E ++ E+DN G D E+D
Sbjct: 367 EDDNNNDHKSEDNSIGEDDNNNDEKGGDNNIDEND 401
Score = 38 (18.4 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 703 EDDNK--RQLETLNLDEEDN 720
E+DN + E N+DE DN
Sbjct: 399 ENDNNSDHKSEDNNIDENDN 418
Score = 38 (18.4 bits), Expect = 3.5e-16, Sum P(3) = 3.5e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 530 ESIQSNSSD-----C---KSHVDDEP-DICILEDISQPARSN 562
E + NSSD C K + DDE D C ED++ SN
Sbjct: 1613 EVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLSSN 1654
Score = 38 (18.4 bits), Expect = 3.9e-15, Sum P(4) = 3.9e-15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1202 LAKPRGNTVTNHSLRHSFN-GSICCPGDSNDLHGGDTLDNISDEN 1245
+AK + ++ N+S + N + D+ND + D D+ +D+N
Sbjct: 571 IAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDN 615
Score = 37 (18.1 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 675 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720
I+ D+ L +T I K +P S +N + N + DN
Sbjct: 559 IIKDEYNLRRT-----KIAKSKPSSDNNNSENDNNNDNNNDNNNDN 599
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 610 DNNDDNNDDNNDDNNDDN 627
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 606 DNNDDNNDDNNDDNNDDN 623
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 DSNDLHGGDTLDNISDEN 1245
D+ND + D D+ +D+N
Sbjct: 602 DNNDDNNDDNNDDNNDDN 619
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 222 (83.2 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 47/129 (36%), Positives = 78/129 (60%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
GG + ++FSQ T+MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 362 GGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLS 420
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 421 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 480
Query: 1380 ALQQKKREM 1388
K ++
Sbjct: 481 RKAASKLQL 489
Score = 137 (53.3 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 227
Query: 950 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 228 EEVGDFIQRYQ-DIEKES-ESASELHKLLQPFLLRRVKA-----EVATELPKKTEVVIYH 280
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 281 GMSALQKKYYKAILMKDLDAFENETAKKVKLQN------ILSQLRKCVDHPYLFDGVE 332
Score = 91 (37.1 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 693
G+ + L +Q ++W+ Q+ HC G IL D+ GLGKT TIAL +
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQR----FHCQNGCILGDEMGLGKTCQTIALFI 86
Score = 79 (32.9 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 818
L++CP SVL W EE++ + G LS + Y G + D + ++F V++TTY I
Sbjct: 99 LILCPLSVLSNWKEEMQR--FAPG-LSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEI 155
Score = 41 (19.5 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 506 GVKED---MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSN 562
G KE+ ++ ++K S H+L + E ++S KS P ++ D + + N
Sbjct: 128 GDKEERACLQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-N 181
Query: 563 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYS 598
QS +L KTLS S + G P+ S YS
Sbjct: 182 QSSLLHKTLSEFSVVFS--LLLTGTPIQNSLQELYS 215
Score = 39 (18.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 23/107 (21%), Positives = 44/107 (41%)
Query: 428 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 487
SF+ P L S+ +V + ++D+ ES+ A ++ R ++ L
Sbjct: 218 SFV--EPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV--KAEVATELPKK 273
Query: 488 RQYFPYAQPSTLNKK--------ELDGVKEDMEAEIKTRSMASHLLK 526
+ Y S L KK +LD + + ++K +++ S L K
Sbjct: 274 TEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRK 320
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 228 (85.3 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 55/143 (38%), Positives = 78/143 (54%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1312
+ L +K I+FS + + LDL E L+ S +Y RLDG+ S R+ +V F P
Sbjct: 344 VGLENKKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPR 403
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
V ++S +A GLN+V++ V+ LD WNP QA R HRIGQT+PV + R+ K
Sbjct: 404 YMVFLLSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKG 463
Query: 1373 TVEDRILALQQKKREMVASAFGE 1395
TVED++ KK + GE
Sbjct: 464 TVEDQMRRRMDKKAYLADKVMGE 486
Score = 163 (62.4 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 46/133 (34%), Positives = 68/133 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W VVLDE IKN R++ + + LR++ R L+GTPIQN + +L+S +L D
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDV 170
Query: 947 F--AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F A K F + + K + LK +MLRRTK D + ++LPPK +
Sbjct: 171 FVPATAKLFENAFSLTDGKFDSIFLSHITRFLKVVMLRRTK---CDSQIGLDLPPKKETV 227
Query: 1005 KQVDFTDEERDFY 1017
V T+ + +Y
Sbjct: 228 FSVPLTELQLGWY 240
Score = 84 (34.6 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT--LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 800
G + ++ + + K A + LVVCP SVL W E+ T L + YHG S
Sbjct: 20 GKTLQALSLFQYVKDNERADSKFLVVCPLSVLNTWMSEISRWTTG---LRPMAYHGGSEE 76
Query: 801 KD---PC---ELAK-FDVVITTYSIVSMEV 823
++ C + A+ +++V+TTY + ++
Sbjct: 77 RENLRTCFRQQGAEPWNIVVTTYETLCSDL 106
Score = 71 (30.1 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 673 GGILADDQGLGKTISTIAL 691
GGILADD GLGKT+ ++L
Sbjct: 10 GGILADDMGLGKTLQALSL 28
Score = 40 (19.1 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 27 IDMDTLLGILEEEKQPDRV 45
+D LLG +E+EK V
Sbjct: 247 VDESILLGSIEQEKSQSNV 265
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 223 (83.6 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 41/118 (34%), Positives = 73/118 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 850 GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTT 909
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
+ +G+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 910 RVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 967
Score = 159 (61.0 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 945 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 992
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 691 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 747
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
++LP K + T+E+ Y I+S++ ++ + + I L+ LR
Sbjct: 748 MSLSLPDKNEQVLFCRLTEEQHKVYQNF-IDSKEVYR-------ILNGDMQIFSGLVALR 799
Query: 1053 QACDHPLLVKGFDSN 1067
+ C+HP L G N
Sbjct: 800 KICNHPDLFSGGPKN 814
Score = 96 (38.9 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 497 GFLFRKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 551
Query: 702 TEDDNKR 708
T N R
Sbjct: 552 TRGSNYR 558
Score = 68 (29.0 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 816
T++VCPT+V+ QW +E T V + H GS ++ K+ ++A ++IT+Y
Sbjct: 565 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTQKKEKLIRDIAHCHGILITSY 621
Query: 817 SIVSM 821
S + +
Sbjct: 622 SYIRL 626
Score = 39 (18.8 bits), Expect = 2.2e-30, Sum P(5) = 2.2e-30
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 363 QPCTYSHSHSSRT---KQMVFAK--DEGNDDLFPCWSTVSDSVEPIDEAVGRNS 411
Q C S + S+ KQ + K D+GN ++ + S + P A GR+S
Sbjct: 15 QDCLLSKTEQSQCVSDKQEMTIKQEDDGNMEVEESLPSCSSANGPSASAEGRSS 68
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 257 (95.5 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 56/158 (35%), Positives = 88/158 (55%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT-LPE 1312
+ +K + ++FSQ TKML++LE L+ QY R+DG++ R KA+ FN + E
Sbjct: 595 LKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSE 654
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
V ++S +A LG+N+ A V++ D WNP + QA RAHR+GQ + V + R N
Sbjct: 655 HFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHN 714
Query: 1373 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDL 1410
+VE+RI+ + + K M+ GG T + D+L
Sbjct: 715 SVEERIMQVAKHKM-MLTHLVVRPGMGGMTTNFSKDEL 751
Score = 166 (63.5 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 878 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 937
+ + A L + W +V+DEA +++++++ R R + L+GTP+QN +++L+
Sbjct: 391 ISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFH 450
Query: 938 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINL 997
FL F ++F + +SK + K+L +L+ MLRR K +L ++
Sbjct: 451 LLNFLSSGKFNDLQTFQAEF-TDVSKE--EQVKRLHEILEPHMLRRLKADVLK-----SM 502
Query: 998 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057
PPK + +V+ + ++ FY + + FK G + ++L +++ LR+ C+H
Sbjct: 503 PPKSEFIVRVELSSMQKKFYKHILTKN---FKALNQKGGGR--VCSLLNIMMDLRKCCNH 557
Query: 1058 PLL 1060
P L
Sbjct: 558 PYL 560
Score = 60 (26.2 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKTI T+ +
Sbjct: 289 ILADEMGLGKTIQTVVFL 306
Score = 42 (19.8 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 808 KFDVVITTYSIVSME 822
KF+V++T+Y +S++
Sbjct: 380 KFNVMLTSYEFISVD 394
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 291 (107.5 bits), Expect = 3.3e-30, Sum P(4) = 3.3e-30
Identities = 62/160 (38%), Positives = 94/160 (58%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 586 LPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDV 645
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQTRPV V RL NT
Sbjct: 646 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANT 705
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 706 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 744
Score = 117 (46.2 bits), Expect = 3.3e-30, Sum P(4) = 3.3e-30
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 326 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 385
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 386 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 445
Query: 1005 KQVDFTDEERDFYSQL 1020
+ ++ FY+ +
Sbjct: 446 VYAPLSKKQEIFYTAI 461
Score = 68 (29.0 bits), Expect = 3.3e-30, Sum P(4) = 3.3e-30
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 674 GILADDQGLGKT---ISTIALILKERPP 698
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 222 GILADEMGLGKTVQCIATIALMIQRGVP 249
Score = 61 (26.5 bits), Expect = 1.7e-24, Sum P(4) = 1.7e-24
Identities = 32/123 (26%), Positives = 59/123 (47%)
Query: 957 IKVPISKNPVKGY---KKLQAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 1007
++VP K V Y K Q + T ++ RT + + E + P PK K V
Sbjct: 436 LEVP-PKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETVELSPTGRPKRRTRKSV 494
Query: 1008 DFTDEERDFYSQLE-INSR-----DQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPL 1059
D++ + DF ++LE + S+ D+ + ++ VN+ L +++ LR+ C+HP
Sbjct: 495 DYSKID-DFPNELEKLISQIQPEVDRERTIVETSVPIESEVNLKLQNIMMLLRKCCNHPY 553
Query: 1060 LVK 1062
L++
Sbjct: 554 LIE 556
Score = 45 (20.9 bits), Expect = 7.4e-23, Sum P(4) = 7.4e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 358 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 417
Query: 1045 LLMLL 1049
L +L
Sbjct: 418 LHQIL 422
Score = 43 (20.2 bits), Expect = 3.3e-30, Sum P(4) = 3.3e-30
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 323
+ S+N ++S EE + K + E E + SS+ V + Q S +K
Sbjct: 111 EDESYNISEVMSKEEILSVAKKNKKENEDE-SSSSNMCVEDLQKNKDSNSKIK 162
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 209 (78.6 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 368 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 426
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 427 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 486
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 487 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 532
Score = 203 (76.5 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 163 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 222
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 223 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 274
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 275 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 330
Query: 1065 DSNSL 1069
+ L
Sbjct: 331 EEKIL 335
Score = 68 (29.0 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 76
Score = 67 (28.6 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 30 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 86
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 87 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 142
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 143 AYKFDALITTFEMILSDCPE 162
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 277 (102.6 bits), Expect = 3.7e-30, Sum P(4) = 3.7e-30
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 850 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 909
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 910 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 969
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1408
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 970 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTIDE--GDEGSMPAD 1018
Score = 108 (43.1 bits), Expect = 3.7e-30, Sum P(4) = 3.7e-30
Identities = 44/195 (22%), Positives = 90/195 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 629 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 688
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 689 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 743
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
++++ Y L N + K+ + +++N + ++++LR+ +HPLL + + +
Sbjct: 744 CAMSEKQEQLYLGL-FN---RLKK--SINNMEKN-TEMCNVMMQLRKMANHPLLHRQYYT 796
Query: 1067 NSLLRSSVEMAKKLP 1081
L+ ++ K P
Sbjct: 797 AEKLKEMSQLMLKEP 811
Score = 83 (34.3 bits), Expect = 3.7e-30, Sum P(4) = 3.7e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 497 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 539
Score = 58 (25.5 bits), Expect = 3.7e-30, Sum P(4) = 3.7e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 552 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 608
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 230 (86.0 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 58/145 (40%), Positives = 88/145 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIM 1318
G + ++FS TK+LD+LE L+ + YRR+DGT S+ R+ A+ DFN P+ + ++
Sbjct: 1324 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND-PDTDCFIFLL 1382
Query: 1319 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
S++AA GLN+ A V++ D NP E+QA+ RAHRIGQTR V V+ + VE
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEA--VVEK-- 1438
Query: 1379 LALQQKKREMVA--SAFGEDETGGQ 1401
L+ QK+ E+ + S ED+ G+
Sbjct: 1439 LSSHQKEDELRSGGSVDLEDDMAGK 1463
Score = 134 (52.2 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 34/102 (33%), Positives = 53/102 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L+KV W +++DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S L
Sbjct: 1098 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1157
Query: 945 DPFAVYKSFCSMIKVPISKN-PVKGYKK--LQAVLKTIMLRR 983
D F K+F P K P + L+ K I++ R
Sbjct: 1158 DVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHR 1199
Score = 89 (36.4 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
P + A L +Q + L WM+ + L+ GILAD+ GLGKT+ +ALI
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALI 1020
Score = 73 (30.8 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTK----DPCELAKFDVVITTYS 817
L++ P +VL W EL T S+S + Y G+ R+K + C + KF+V++TTY
Sbjct: 1034 LIIVPNAVLVNWKSELH---TWLPSVSCIYYVGTKDQRSKLFSQEVCAM-KFNVLVTTYE 1089
Query: 818 IVSMEVPK 825
+ + K
Sbjct: 1090 FIMYDRSK 1097
Score = 61 (26.5 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 499 LNKKELDGVKED---MEAEIKTRSMASHL-LKLSPESIQSNSSDCKSHVDDEPDICILED 554
L+KK D +K+ + ++ + + L L+L E + SD +S V +E D E
Sbjct: 697 LSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEI 756
Query: 555 ISQPARSNQSLVL---GKTLSMNRSACSNHSVALGKPVVT 591
+S P R + V + L MNR +N K + T
Sbjct: 757 MSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKT 796
Score = 55 (24.4 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 29/113 (25%), Positives = 49/113 (43%)
Query: 971 KLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR----- 1025
+L +L+ MLRR + +G +LP KV ++ + + + Y ++
Sbjct: 1199 RLHQILEPFMLRRRVEDV-EG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDP 1253
Query: 1026 DQFKEYAAAGTVKQN--YVNILLMLLRLRQACDHPLL----VKGFDSNSLLRS 1072
D K A + Q Y + + LR+AC+HPLL F + L+RS
Sbjct: 1254 DDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRS 1306
Score = 41 (19.5 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 610 GLGGMKSKASDERLIL-QVAMQGI---SQPNAEASAPDG 644
G+ G S D+ + + MQ + SQP A +S P G
Sbjct: 155 GMVGSSSVGKDQDARMGMLNMQDLNPSSQPQASSSKPSG 193
Score = 39 (18.8 bits), Expect = 4.3e-30, Sum P(7) = 4.3e-30
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 234 NVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETAT 288
NVAS +I S+ S + N+ I G S +H LS+ A+
Sbjct: 299 NVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGSFAS 353
Score = 38 (18.4 bits), Expect = 1.8e-23, Sum P(6) = 1.8e-23
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 660 WMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 719
++ +K T SL G+LA + + + L L+ R D R E ++ +++
Sbjct: 696 FLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQE 755
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 227 (85.0 bits), Expect = 5.5e-30, Sum P(5) = 5.5e-30
Identities = 51/134 (38%), Positives = 81/134 (60%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K G + ++FSQ +MLD+L L Q++RLDG++ R +A+ FN E
Sbjct: 808 LKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFC 867
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A LG+N+ +A V++ D WNP + QA RAHRIGQ + V++ RL K TVE
Sbjct: 868 FLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 927
Query: 1376 DRILALQQKKREMV 1389
+ I+ ++ K++MV
Sbjct: 928 EDII--ERAKKKMV 939
Score = 192 (72.6 bits), Expect = 5.5e-30, Sum P(5) = 5.5e-30
Identities = 54/180 (30%), Positives = 94/180 (52%)
Query: 883 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 942
G L + W + +DEA +KN + + + R+ R ++GTP+QN++ +L+S FL
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFL 668
Query: 943 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
D F ++ F + K GY+ L VL+ +LRR K D E +LP KV
Sbjct: 669 MSDKFESWEDF----EDEHGKGRDNGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVE 719
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
+ +VD + +++ FY I +R+ FK + GT + + L +++ L++ C+H L+K
Sbjct: 720 QILRVDMSAQQKQFYKW--ILTRN-FKALSK-GT-RGSSSGFLNIVMELKKCCNHAFLIK 774
Score = 73 (30.8 bits), Expect = 5.5e-30, Sum P(5) = 5.5e-30
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q ++W+ S C+ ILAD+ GLGKTI TI+ +
Sbjct: 492 YQLDGVNWLAH---SWCRCNSVILADEMGLGKTIQTISFL 528
Score = 54 (24.1 bits), Expect = 5.5e-30, Sum P(5) = 5.5e-30
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRT-KD-----P-CELAKFDVVI 813
+VV P S L W E T ++V+VY G S +T +D P + KF+ ++
Sbjct: 542 IVVVPLSTLTSWQREFD---TWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 814 TTYSIV 819
TTY I+
Sbjct: 599 TTYEIL 604
Score = 47 (21.6 bits), Expect = 6.5e-30, Sum P(6) = 6.5e-30
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 59 QDE-LVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFS 111
+DE Q S ++ +S SG+ESG +S E + + S + S S S
Sbjct: 10 EDEGSTQSNASSNSASEESNRSGSESGSQSESEQGSEKAQSRHSESNSTSDSES 63
Score = 40 (19.1 bits), Expect = 5.5e-30, Sum P(5) = 5.5e-30
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESG 84
K+SP DL N Q EL D+ Q+ + +G
Sbjct: 363 KASPEDLEYYNCQQ-ELTNDLSKQ--FQIIERVIATRTG 398
Score = 37 (18.1 bits), Expect = 6.5e-30, Sum P(6) = 6.5e-30
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 521 ASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS----QPARSN 562
+S +K P + N +D K ++ PD+ + S +PAR N
Sbjct: 79 SSAQVKDKPVRKKDNLADVKKMWEEHPDVYGVRRSSRSRQEPARLN 124
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 278 (102.9 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1408
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE--GDEGSMPAD 1015
Score = 107 (42.7 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 44/195 (22%), Positives = 90/195 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIEL 740
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
++++ Y L N + K+ + +++N + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 1067 NSLLRSSVEMAKKLP 1081
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 56 (24.8 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + ++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 278 (102.9 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1403
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 1067 NSLLRSSVEMAKKLP 1081
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 278 (102.9 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1403
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 1067 NSLLRSSVEMAKKLP 1081
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 278 (102.9 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 1238 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1403
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 948
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 949 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 1066
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 1067 NSLLRSSVEMAKKLP 1081
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 817
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 218 (81.8 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 41/118 (34%), Positives = 72/118 (61%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G++ ++FSQ +ML +LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 849 GQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTT 908
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 909 RVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 966
Score = 154 (59.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 57/196 (29%), Positives = 87/196 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFP 688
Query: 945 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 992
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 689 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 745
Query: 993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
++LP K + TDE+ Y I+S+ ++ G +N I L+ LR
Sbjct: 746 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-IDSKAVYR--ILNG---EN--QIFSGLVALR 797
Query: 1053 QACDHPLLVKGFDSNS 1068
+ C+HP L G N+
Sbjct: 798 KICNHPDLFSGGPKNT 813
Score = 97 (39.2 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 701
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 495 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 549
Query: 702 TEDDNKR 708
T N R
Sbjct: 550 TRGSNYR 556
Score = 66 (28.3 bits), Expect = 5.8e-30, Sum P(4) = 5.8e-30
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 763 TLVVCPTSVLRQWAEE 778
TL+VCPT+V+ QW +E
Sbjct: 563 TLIVCPTTVMHQWVKE 578
Score = 42 (19.8 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 1164 GQEIPTDYSDSKLVEAPSCE 1183
GQE D K + +PSC+
Sbjct: 32 GQETAGDSEAGKCLSSPSCD 51
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 213 (80.0 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 509 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 568
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 569 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 620
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 621 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 675
Query: 1064 FDSNSL 1069
+ L
Sbjct: 676 AEEKIL 681
Score = 194 (73.4 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 720 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 778
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 779 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 838
Query: 1378 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1410
+ K + + + + GG QQ +++ V+DL
Sbjct: 839 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 877
Score = 66 (28.3 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 413 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 468
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 469 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 508
Score = 65 (27.9 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 383 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 422
Score = 39 (18.8 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 19/81 (23%), Positives = 30/81 (37%)
Query: 333 KRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPC 392
K++ KN +P+ L L +S + S R + + N+DL
Sbjct: 117 KKKKGKRKNEIPVDSLDLDQDLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLD-- 174
Query: 393 WSTVSDSVEPIDE-AVGRNSS 412
+ V D E I GR S+
Sbjct: 175 FKVVDDDGETIAVLGAGRTSA 195
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 228 (85.3 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 57/168 (33%), Positives = 95/168 (56%)
Query: 1226 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1282
P D N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 763 PPDDNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 821
Query: 1283 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 822 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 881
Query: 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 882 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 927
Score = 162 (62.1 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 47/208 (22%), Positives = 97/208 (46%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 599 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 658
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 659 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 709
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 710 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 764
Query: 1065 DSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
D N + + ++ LL+ L
Sbjct: 765 DDNEFYNKQEALQHLIRSSGKLILLDKL 792
Score = 76 (31.8 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 52/203 (25%), Positives = 81/203 (39%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 555
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 333 TLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 390
Query: 556 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 609
A SNQ G K + S CS AL ++ Y P
Sbjct: 391 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQSKTTPFK 448
Query: 610 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 669
+K + R VA++ QP S G ++ L +Q L+W+
Sbjct: 449 DCKVLKQRP---RF---VALK--KQP----SYIGGHESLELRDYQLNGLNWLAHSWCKGN 496
Query: 670 HCSGGILADDQGLGKTISTIALI 692
C ILAD+ GLGKTI TI+ +
Sbjct: 497 SC---ILADEMGLGKTIQTISFL 516
Score = 63 (27.2 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 32/131 (24%), Positives = 54/131 (41%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGI-SQF 131
Q Q + + ++SG DSSS + + S + DW Q SG+ G S+
Sbjct: 106 QQQQKAASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDW--QMSGSGSVSGTGSDSES 163
Query: 132 ETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITE 191
E G ++ SE D Y + +N + ++ + G + R +D+S E
Sbjct: 164 EEDGDKSSCEESESD-Y---EPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEE--E 217
Query: 192 NFDERYGHYGA 202
+ DE Y G+
Sbjct: 218 DDDEDYDKRGS 228
Score = 55 (24.4 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKD---P-CELAKFDVVI 813
L+V P S L W E++ T ++ +VY G RT + P + KF++++
Sbjct: 530 LLVVPLSTLTSWQREIQ---TWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILL 586
Query: 814 TTYSIV 819
TTY I+
Sbjct: 587 TTYEIL 592
Score = 49 (22.3 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 35 ILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGS------HSNLQLQSEISGAESGGLGD 88
+L++++Q + SS + S ++ D S H + Q SG+ SG D
Sbjct: 101 VLKKQQQQQKAASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSD 160
Query: 89 SSSQLEPTEQKC 100
S S+ + + C
Sbjct: 161 SESEEDGDKSSC 172
Score = 44 (20.5 bits), Expect = 2.9e-27, Sum P(6) = 2.9e-27
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 421 PFKDSGQSFIGLSPSLLS-QNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPID 476
P K G F SPS+L+ Q V K++ + S +E D SSS D
Sbjct: 78 PPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS--EE--DSSSSEDSAD 130
Score = 43 (20.2 bits), Expect = 6.7e-28, Sum P(5) = 6.7e-28
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 67 GSHSNLQLQSEISGAESGGLGDSSSQL--EPTEQKCSPLQTCSASFSDWFNQNSGTCCPE 124
GS S SG+ESG +S S E + + P + + F W + S
Sbjct: 41 GSSSQSGSSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEF--WKSSPSILAVQR 98
Query: 125 SVGIS-QFETPGCSTASSFSEGD 146
S + Q + +++ S SE D
Sbjct: 99 SAVLKKQQQQQKAASSDSGSEED 121
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(6) = 2.9e-27
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 53 SLRNLS-QDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFS 111
S+RN S + D GS S SG+ SG D SS + S ++ S S S
Sbjct: 9 SVRNSSGESRSDDDSGSASGSG-----SGSSSGSSSDGSSSQSGSSDSESGSESGSQSES 63
Query: 112 D 112
+
Sbjct: 64 E 64
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 259 (96.2 bits), Expect = 6.7e-30, Sum P(5) = 6.7e-30
Identities = 55/131 (41%), Positives = 83/131 (63%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-- 1314
+K G + ++FSQ KMLD+L ++ Y+RLDGT+ +R A++ +N P+ S
Sbjct: 768 LKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNA-PDSSDF 826
Query: 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374
I+S +A LG+N++ A V+L D WNP + QA+ RAHRIGQT+PVSV RL K+TV
Sbjct: 827 AFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTV 886
Query: 1375 EDRILALQQKK 1385
E+ ++ + K
Sbjct: 887 EEEVIERARNK 897
Score = 144 (55.7 bits), Expect = 6.7e-30, Sum P(5) = 6.7e-30
Identities = 60/220 (27%), Positives = 106/220 (48%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L++ W + +DEA +KN +Q+ + R ++GTPIQN + +L + FL
Sbjct: 569 LSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFL-- 626
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGEPIINLPPKV 1001
+P V + + N +KL + K I MLRRTK T ++ + LPPK
Sbjct: 627 NPGLVN------VDADMDLNSEAASEKLAELTKAISPFMLRRTK-TKVESD----LPPKT 675
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA--GTVKQNYVNILLMLLRLRQACDHPL 1059
+ +V+ +D + ++Y + K YAA GT Q ++L +++ L++A +HP
Sbjct: 676 EKIIRVELSDVQLEYYKNILT------KNYAALNEGTKGQKQ-SLLNIMMELKKASNHPF 728
Query: 1060 LVKGFDSNSLLRSS--VEMAKKL-PQERQMYLLNCLEASL 1096
+ ++ L S+ ++ + L +M LL+ L A L
Sbjct: 729 MFPSAETKILEGSTRREDVLRALITSSGKMMLLDQLLAKL 768
Score = 64 (27.6 bits), Expect = 6.7e-30, Sum P(5) = 6.7e-30
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 675 ILADDQGLGKTISTIALI 692
+LAD+ GLGKT+ T+A I
Sbjct: 468 VLADEMGLGKTVQTVAFI 485
Score = 59 (25.8 bits), Expect = 6.7e-30, Sum P(5) = 6.7e-30
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---ELA--------KFDVV 812
+VV P S + WAE N L+ +VY+G+ +++ EL KF+V+
Sbjct: 499 VVVVPLSTMPSWAETFDNW---SPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVL 555
Query: 813 ITTYSIVSME 822
+TTY V ++
Sbjct: 556 LTTYEYVLVD 565
Score = 53 (23.7 bits), Expect = 6.7e-30, Sum P(5) = 6.7e-30
Identities = 32/119 (26%), Positives = 48/119 (40%)
Query: 224 PYTDAEVSSHNVASTDSTICHGSEIIS--DDDYYSAMPCYINTGDTIFGDPSSFNFQHLL 281
P TDA + +A+ D HG+ + +DD S + D DP+ ++
Sbjct: 23 PVTDAAGLHNELAAND----HGNTVFQSPEDDAVS------ESSDN--ADPADDSYN--- 67
Query: 282 SSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG--KGSMLKVPAIDYLDAKRQCED 338
+ A DE G T A +SS V P +G+ K P++D D RQ D
Sbjct: 68 TDSPDAEGEDDESG--TENSAKASSPPVAENSSSPQTTRGTKRKSPSVDDADFIRQNPD 124
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 220 (82.5 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 49/123 (39%), Positives = 75/123 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEA--SLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSV 1315
G KA++F+Q +MLD+LE S KD S + Y R+DGT ++ R V FN V
Sbjct: 667 GYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNN-ESFDV 725
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
+++ + LG+N+ A +++ D WNP+T+ QA +RA RIGQ R VS+ RL V ++E
Sbjct: 726 FLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIE 785
Query: 1376 DRI 1378
++I
Sbjct: 786 EKI 788
Score = 151 (58.2 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 56/196 (28%), Positives = 87/196 (44%)
Query: 878 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 937
L I + L KV W VLDE I+N ++++ C L+ R LSGTPIQN + +L+S
Sbjct: 451 LRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWS 510
Query: 938 YFRFLRYDPFAVYKSFCSMIKVPIS----KNPVK-----GYK---KLQAVLKTIMLRRTK 985
F F+ F +PI+ N GYK L+ ++ +LRR K
Sbjct: 511 LFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVK 570
Query: 986 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 1045
+ +LP K M+ T +R Y + ++S D ++ N+L
Sbjct: 571 ADVAK-----DLPQKKEMVLFCKLTKYQRSKYLEF-LHSSD-------LNQIQNGKRNVL 617
Query: 1046 LMLLRLRQACDHPLLV 1061
+ LR+ C+HP L+
Sbjct: 618 FGIDILRKICNHPDLL 633
Score = 88 (36.0 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 636 NAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
N++ P + ++ L +Q+ + W+ E +C GGI+ D+ GLGKTI IA I
Sbjct: 284 NSQFKIPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
Score = 59 (25.8 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 764 LVVCPTSVLRQWAEELRN 781
L+VCP +V++QW E ++
Sbjct: 350 LIVCPATVMKQWCNEFQH 367
Score = 53 (23.7 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 36 LEEEKQPDRVK----SSPGDLSLRNLSQ----DELVQDVGSHSNLQ-LQSE 77
+E+++Q D K S DL + LSQ +++ DV + SNLQ LQ E
Sbjct: 1 MEDKEQQDNAKLENNESLKDLGVNVLSQSSLEEKIANDVTNFSNLQSLQQE 51
Score = 51 (23.0 bits), Expect = 1.9e-24, Sum P(5) = 1.9e-24
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 660 WMVQKETSSLHCSGGILADDQGLGKTISTIA-LILKERPPSFRTED-DN----KRQLET- 712
W T LH G +A DQ + + LI+ +P F ED N K+ LE+
Sbjct: 368 WWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRTKKALESS 427
Query: 713 LNLDEEDNGIQVNGLDLV 730
+LD+ + + +G L+
Sbjct: 428 YHLDKLIDKVVTDGHILI 445
Score = 45 (20.9 bits), Expect = 2.4e-19, Sum P(6) = 2.4e-19
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1069 LLRSSVEMAKKLPQERQMYL 1088
L R ++AK LPQ+++M L
Sbjct: 566 LRRVKADVAKDLPQKKEMVL 585
Score = 45 (20.9 bits), Expect = 2.4e-19, Sum P(6) = 2.4e-19
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 1186 WYNSSKIKAALEVLQSLAKPRGNTVTN-HSLRHSFNG 1221
W NS++ K ALE L K VT+ H L ++ G
Sbjct: 414 WKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVG 450
Score = 43 (20.2 bits), Expect = 6.9e-30, Sum P(6) = 6.9e-30
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 262 INTGD-TIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTE 300
I TG T FG + F+ + KDE+ E TE
Sbjct: 146 IRTGKITAFGHKAGFSLDTANREYAKNDEQKDEDFEMATE 185
Score = 37 (18.1 bits), Expect = 3.3e-12, Sum P(4) = 3.3e-12
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 1236 DTLDNISDENEKIAAKCSID 1255
D DN+SD++ +++ K S D
Sbjct: 193 DEDDNLSDQDYQMSGKESED 212
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 236 (88.1 bits), Expect = 9.2e-30, Sum P(5) = 9.2e-30
Identities = 57/155 (36%), Positives = 86/155 (55%)
Query: 1263 KAIVFSQWTKMLDLLEASL-KDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L K + Y RLDG++ R V FN P + V++++
Sbjct: 1656 RVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLT 1715
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1716 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1775
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K +A+ E Q+ T LN LF
Sbjct: 1776 GLQKFKMT-IANTVISQENASLQSMGTEQLLN-LF 1808
Score = 136 (52.9 bits), Expect = 9.2e-30, Sum P(5) = 9.2e-30
Identities = 52/189 (27%), Positives = 87/189 (46%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1412 ILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1471
Query: 954 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
+ PI S+ G ++A+ + ++ LRR K +L +LPPK+
Sbjct: 1472 AARYGKPILASRDAKSSSREQEAGVLAMEALHRQVLPFLLRRMKDDVLQ-----DLPPKI 1526
Query: 1002 IMLKQVDFTDEERDFY-----SQLEINSRDQFKEYAAAGTVKQNYV----NILLMLLRLR 1052
I + + + Y S+ ++N D + ++ + ++ L LR
Sbjct: 1527 IQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLR 1586
Query: 1053 QACDHPLLV 1061
+ C+HP LV
Sbjct: 1587 KLCNHPALV 1595
Score = 94 (38.1 bits), Expect = 9.2e-30, Sum P(5) = 9.2e-30
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1232 GIPDPPSMSEDLIRQKAR-ERHFLEQLLDGRKLENYKIPVP---IKAELRKYQQDGVNWL 1287
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 1288 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1315
Score = 79 (32.9 bits), Expect = 9.2e-30, Sum P(5) = 9.2e-30
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
++VVCP ++ W +E+ K SK L+ L Y G + R + ++ K ++++ +Y +V
Sbjct: 1339 SIVVCPPTLTGHWVDEV-GKFCSKEFLNPLHYTGPPTERARLQHQVKKHNLIVASYDVVR 1397
Query: 821 MEV 823
+V
Sbjct: 1398 NDV 1400
Score = 53 (23.7 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKS----HVDDEPDICIL-EDISQPARS 561
+K+D+ ++ + + + LSP +Q KS +VDD ED +P
Sbjct: 1514 MKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLK 1573
Query: 562 NQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
V + L R C NH AL V+T QH Y
Sbjct: 1574 ATGHVF-QALQYLRKLC-NHP-AL---VLTPQHPEY 1603
Score = 39 (18.8 bits), Expect = 9.2e-30, Sum P(5) = 9.2e-30
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 419 SFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 478
S P K++ Q +IG + ++ + L+ C ICD + S ++ R
Sbjct: 655 SVPVKETVQEYIGGAETVTEEPATRDYVVTRARLMAAKLLGALCSCICDPRLNSSSLELR 714
Score = 38 (18.4 bits), Expect = 4.2e-24, Sum P(5) = 4.2e-24
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 648 VPLLRHQRIALSWMVQKE-TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDN 706
+PLL Q L +Q T+ H + + + T+ T+ + L++ P DDN
Sbjct: 1111 IPLLMEQLPLLCTCLQHPYTAVRHMAARCVGVLSKIA-TMETMNVFLEQVLPWLGAIDDN 1169
Query: 707 KRQ 709
+Q
Sbjct: 1170 TKQ 1172
Score = 37 (18.1 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1051 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQM 1086
LR A D + FDS+ LL+ +A+ L Q+
Sbjct: 1067 LRNALD----AQEFDSSQLLKQGDSVAQDLVNSLQV 1098
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 230 (86.0 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 55/140 (39%), Positives = 80/140 (57%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G+K ++FS +MLD+LE L + RLDG+ R V DFN P V ++S
Sbjct: 544 GDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLIST 603
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA LGLN+V+A V++ D WNP+ + QA DR+ R GQ R V V RL ++E+ +
Sbjct: 604 KAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYT 663
Query: 1381 LQQKKREM--VASAFGEDET 1398
Q K+++ +A A G+ ET
Sbjct: 664 RQVYKQQLSNIAVA-GKMET 682
Score = 121 (47.7 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 881 VAGP-LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 939
+ GP L+ + W V+ DEA +KN ++++ AC ++ K+R L+GT +QN I +L++ F
Sbjct: 258 IQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLF 317
Query: 940 RFLRYDPFAVYKSFCSMIKVPISKN-----PV-------KGYKKLQAVLKTIMLRRTK 985
++ + F P+ P K + L ++L+ MLRRTK
Sbjct: 318 EWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTK 375
Score = 91 (37.1 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
LL HQR + +M ++ H GGIL DD GLGKTI TIA +
Sbjct: 139 LLEHQREGVKFMYNLYKNN-H--GGILGDDMGLGKTIQTIAFL 178
Score = 78 (32.5 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 742 NGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 801
+G + +S +E KG P L++CP+S++ W E + V VYHGS+R
Sbjct: 185 DGDAGESC-LLESDKG-PV---LIICPSSIIHNWESEFSRWASF---FKVSVYHGSNRDM 236
Query: 802 --DPCELAKFDVVITTYSIVSMEVP 824
+ + +V++T++ ++ P
Sbjct: 237 ILEKLKARGVEVLVTSFDTFRIQGP 261
Score = 45 (20.9 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 414 HDGCNSFPF 422
HDGC+S PF
Sbjct: 452 HDGCDSCPF 460
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1382 QQKKREMVASAFGED 1396
Q+K E V++ FG D
Sbjct: 491 QKKDAEFVSTVFGTD 505
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 205 (77.2 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 485 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 543
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 544 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 603
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 604 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 649
Score = 201 (75.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 280 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 339
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 340 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 391
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 392 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 446
Query: 1064 FDSNSL 1069
+ L
Sbjct: 447 AEEKIL 452
Score = 76 (31.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 695 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 750
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 132 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 191
Query: 751 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 800
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 192 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 247
Query: 801 --KDPCELA-----KFDVVITTYSIVSMEVPK 825
KDP KF +ITT+ ++ + P+
Sbjct: 248 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 279
Score = 66 (28.3 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 193
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 221 (82.9 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 51/151 (33%), Positives = 82/151 (54%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
GG + ++FSQ T MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQP-IFVFLLS 414
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 1380 ALQQKKREMVASAF--GEDETGGQQTRLTVD 1408
K ++ G G Q+ D
Sbjct: 475 RKAASKLQLTNMVIEGGHFTLGAQKPAAEAD 505
Score = 140 (54.3 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 48/183 (26%), Positives = 78/183 (42%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L W + +DEA +KN + + R R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEP 216
Query: 945 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
D F + F + I K K +L +L+ +LRR K + LP K
Sbjct: 217 DLFCREQVEDFVQCYQ-DIEKES-KSASELHRLLRPFLLRRVKAQVAT-----ELPKKTE 269
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++ + ++ +Y + + D F+ A QN +L +LR+ DHP L
Sbjct: 270 VVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQN------VLTQLRKCVDHPYLFD 323
Query: 1063 GFD 1065
G +
Sbjct: 324 GVE 326
Score = 82 (33.9 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 693
G+ + L +Q ++W+VQ H G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHGQNGCILGDEMGLGKTCQTIALLI 80
Score = 78 (32.5 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-----RTKDPCELAKFDVVITTYSI 818
L++CP SVL W EE+ + G LS + Y G R +D + + F V++TTY I
Sbjct: 93 LILCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEI 149
Score = 37 (18.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 421 PFKDSGQSFIGL----SPSLLSQNQVVHAKEEHEDLILESKRA 459
P ++S Q L P L + QV + ++D+ ESK A
Sbjct: 199 PIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSA 241
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 213 (80.0 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 495
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 496 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 550
Query: 1064 FDSNSL 1069
+ L
Sbjct: 551 AEEKIL 556
Score = 194 (73.4 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 595 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 653
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 654 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 713
Query: 1378 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1410
+ K + + + + GG QQ +++ V+DL
Sbjct: 714 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 66 (28.3 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 39 (18.8 bits), Expect = 6.6e-14, Sum P(4) = 6.6e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1339 DLWWNPTTEDQAIDRAHRIGQTRPV 1363
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 213 (80.0 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 495
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 496 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 550
Query: 1064 FDSNSL 1069
+ L
Sbjct: 551 AEEKIL 556
Score = 194 (73.4 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 595 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 653
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 654 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 713
Query: 1378 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1410
+ K + + + + GG QQ +++ V+DL
Sbjct: 714 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 66 (28.3 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 39 (18.8 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1339 DLWWNPTTEDQAIDRAHRIGQTRPV 1363
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 205 (77.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1288 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1346
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1347 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1406
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1407 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1452
Score = 202 (76.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1083 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1142
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1143 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1194
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1195 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1249
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1250 AEEKIL 1255
Score = 74 (31.1 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 798
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 987 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1042
Query: 799 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 825
RT KDP KF +ITT+ ++ + P+
Sbjct: 1043 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1082
Score = 64 (27.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 957 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 996
Score = 42 (19.8 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 1346 TEDQAIDRAH----RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397
+E++A D+A + G+T S + T+E IL + + E + S G DE
Sbjct: 2922 SEEKAADKAEGGPCKDGETLEGSDAEENLDKTIESSILEDEVAQGEELDSLEGGDE 2977
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 1226 PGDSNDLHGGDTLD 1239
PG ND HG +D
Sbjct: 127 PGMQNDRHGQSFVD 140
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 205 (77.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1289 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1347
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1348 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1407
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1408 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1453
Score = 202 (76.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1084 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1143
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1144 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1195
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1196 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1250
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1251 AEEKIL 1256
Score = 74 (31.1 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 798
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 988 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1043
Query: 799 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 825
RT KDP KF +ITT+ ++ + P+
Sbjct: 1044 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1083
Score = 64 (27.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 958 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 997
Score = 48 (22.0 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1345 TTEDQAIDRAH----RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397
T+E++A D+A + G+T S + TVE IL + + E + S G DE
Sbjct: 2922 TSEEKAADKAEGGPCKDGETLEGSDAEENLDKTVESSILEDEVAQGEELDSLEGGDE 2978
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 205 (77.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1298 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1356
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1357 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1416
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1417 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1462
Score = 202 (76.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1093 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1152
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1153 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1204
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1205 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1259
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1260 AEEKIL 1265
Score = 74 (31.1 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 798
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 997 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1052
Query: 799 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 825
RT KDP KF +ITT+ ++ + P+
Sbjct: 1053 RTIQSYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1092
Score = 64 (27.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 967 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1006
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 227 (85.0 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 50/160 (31%), Positives = 87/160 (54%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-E 1312
+ K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V R +
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1373 TVEDRIL--ALQQKKREMVASAFGEDETGGQQTRLTVDDL 1410
+E+++L A Q+ + + + G + DDL
Sbjct: 582 AIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 147 (56.8 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 945 DPFAVYKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPII 995
D F F S + K +L +L +LRR K D E
Sbjct: 316 DVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKA---DVEK-- 370
Query: 996 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV--KQNYVNILLMLLRLRQ 1053
+L PK+ + TD + ++Y +L D A G V ++ +L ++++LR+
Sbjct: 371 SLLPKIETNVYIGMTDMQVEWYKRLLEKDID-----AVNGVVGKREGKTRLLNIVMQLRK 425
Query: 1054 ACDHPLLVKG 1063
C+HP L G
Sbjct: 426 CCNHPYLFDG 435
Score = 78 (32.5 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 634 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 818
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 819 VSME 822
+ E
Sbjct: 249 ILRE 252
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 227 (85.0 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 50/160 (31%), Positives = 87/160 (54%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-E 1312
+ K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V R +
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1373 TVEDRIL--ALQQKKREMVASAFGEDETGGQQTRLTVDDL 1410
+E+++L A Q+ + + + G + DDL
Sbjct: 582 AIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 147 (56.8 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 945 DPFAVYKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPII 995
D F F S + K +L +L +LRR K D E
Sbjct: 316 DVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKA---DVEK-- 370
Query: 996 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV--KQNYVNILLMLLRLRQ 1053
+L PK+ + TD + ++Y +L D A G V ++ +L ++++LR+
Sbjct: 371 SLLPKIETNVYIGMTDMQVEWYKRLLEKDID-----AVNGVVGKREGKTRLLNIVMQLRK 425
Query: 1054 ACDHPLLVKG 1063
C+HP L G
Sbjct: 426 CCNHPYLFDG 435
Score = 78 (32.5 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 634 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 818
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 819 VSME 822
+ E
Sbjct: 249 ILRE 252
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 229 (85.7 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 49/134 (36%), Positives = 80/134 (59%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-V 1315
+K G + ++FSQ MLD+L+ L+ +RLDG+M R +A+ +N
Sbjct: 723 LKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFA 782
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A LG+N+ A V++ D WNP + QA+ RAHRIGQT+ V++ RL K +VE
Sbjct: 783 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVE 842
Query: 1376 DRILALQQKKREMV 1389
+ I+ ++ KR++V
Sbjct: 843 EEIV--ERAKRKLV 854
Score = 181 (68.8 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 48/182 (26%), Positives = 94/182 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L+ + W +++DEA +KN + + ++ R + ++GTP+QN++ +L++ F+
Sbjct: 527 LSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMP 586
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F ++ F + +++ KG L L+ +LRR K D E +LPPK +
Sbjct: 587 EKFDCWEEF----ETAHNESNHKGISALHKKLEPFLLRRVKK---DVEK--SLPPKTEQI 637
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+VD T ++ FY L N R+ K G++ +VN+++ L++ C+H L +
Sbjct: 638 LRVDMTAHQKQFYKWILTKNYRELSK--GVKGSIN-GFVNLVM---ELKKCCNHASLTRQ 691
Query: 1064 FD 1065
+D
Sbjct: 692 YD 693
Score = 76 (31.8 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 643 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGG--ILADDQGLGKTISTIALI 692
DG L +Q L+WMV C G ILAD+ GLGKTI +I+L+
Sbjct: 398 DGESTHKLRDYQLEGLNWMVYA-----WCKGNSSILADEMGLGKTIQSISLL 444
Score = 49 (22.3 bits), Expect = 4.0e-11, Sum P(4) = 4.0e-11
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1300 RDKAVKDFNTLPEVSVMIMSLKAASLGLN 1328
+ KAV +F T+PE+ I S + S+ LN
Sbjct: 1018 KKKAVGNF-TIPEIKRFIKSFRKFSMPLN 1045
Score = 44 (20.5 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 813
LVV P S + W +E ++++VY G ++D + K + ++
Sbjct: 458 LVVVPLSTMAAWQKEFAQWAPE---MNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAIL 514
Query: 814 TTYSIV 819
TTY I+
Sbjct: 515 TTYEIL 520
Score = 39 (18.8 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 636 NAEASAP---DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 681
+ E S P + +L V + HQ+ W++ K L S G+ G
Sbjct: 625 DVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL--SKGVKGSING 671
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 209 (78.6 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1142 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1200
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1201 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1260
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1261 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1306
Score = 209 (78.6 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 997 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1048
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 1049 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 1104
Query: 1065 DSNSLLRSSVEMAKKLPQE 1083
+ L+ E +PQ+
Sbjct: 1105 EEKILMEFR-EACHIIPQD 1122
Score = 68 (29.0 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 850
Score = 67 (28.6 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 804 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 860
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 861 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 916
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 917 AYKFDALITTFEMILSDCPE 936
Score = 55 (24.4 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 25/95 (26%), Positives = 38/95 (40%)
Query: 17 DEFADDQGLSIDMDTL---LGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQ 73
D DD + D + LG+ D++ G + N S +LV ++ +
Sbjct: 18 DSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGNSSASDLVPPPEETASTE 77
Query: 74 LQSEISGA--ESGGLGDSSSQLEPTEQKCSP-LQT 105
L E + ES L D ++Q EQ P LQT
Sbjct: 78 LPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQT 112
Score = 49 (22.3 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 481 PRVLNEDELPSVRPEEEGEKKRRKKSS 507
Score = 44 (20.5 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 433
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGSGDVGNS 61
Score = 43 (20.2 bits), Expect = 7.0e-13, Sum P(5) = 7.0e-13
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1330 VAACHVLLLDL--WWNPTTEDQAIDRA---HRIGQT 1360
+A C L+L WW P D + R H + QT
Sbjct: 1910 LALCQPPGLELPKWWEPVRHDGELLRGAARHGVSQT 1945
Score = 41 (19.5 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQAAVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 268
Score = 37 (18.1 bits), Expect = 3.8e-10, Sum P(4) = 3.8e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 528 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 559
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 207 (77.9 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 63/181 (34%), Positives = 90/181 (49%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGE----KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1296
I D + KI++ + +K+ GE K IVFSQW +L + +L + IQ+R
Sbjct: 1115 IGDFSTKISSVVEL-VLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNK----- 1168
Query: 1297 VFARDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1355
+K DF N L V+ ++M L S GLN++ A HV L++ NP E QAI R H
Sbjct: 1169 --CTNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIH 1226
Query: 1356 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415
R GQ RP V R V TVE+ IL+L + + T +T+D L LF+
Sbjct: 1227 RFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLS-----THWDLENMTLDSLKKLFI 1281
Query: 1416 V 1416
+
Sbjct: 1282 L 1282
Score = 113 (44.8 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 760 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT--KDPCELAKFDVVITTYS 817
+ T++V P ++ QW EE+ ++ SL VL+Y G T P +LA++DVV+T Y+
Sbjct: 349 SGATIIVSPNAIKMQWFEEIHKHISP--SLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYT 406
Query: 818 IVSMEV 823
I+ E+
Sbjct: 407 ILRNEI 412
Score = 110 (43.8 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 49/199 (24%), Positives = 87/199 (43%)
Query: 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
PL V W+RV LDEAQ +++ + A L A RW ++GT ID+L F+
Sbjct: 436 PLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAINRWAVTGT-----IDELPPLLEFVG 490
Query: 944 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI--MLRRTKGTLLDGEPIINLPPKV 1001
+ N YK + +L+ + L RT + ++ E + +PP+
Sbjct: 491 RPEVCRPPDAWQTVDKAFQLN----YK-CEPLLELLEHSLWRTCKSKVEHE--LGIPPQT 543
Query: 1002 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGT------------VKQNYVNILLM-L 1048
++ +++ ++ E +Y + + +QF A T + + I+L
Sbjct: 544 EVVHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNADNSSCLASISPQLLRIILKPF 603
Query: 1049 LRLRQACDHPLLVKGFDSN 1067
LR+RQ C P++ F+SN
Sbjct: 604 LRIRQTCSVPVV---FNSN 619
Score = 87 (35.7 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCS-GGILADDQGLGKTISTIALILKERPPS 699
A DG+ V +H+ + ++E + GGILAD+ GLGKT+ +A++L P
Sbjct: 205 AIDGITRV--FKHKYCLQFYPFEEEIPKISLPPGGILADEMGLGKTVEFLAMLLMNPRPQ 262
Query: 700 FRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 737
+D Q L+E + + + + K++ +C
Sbjct: 263 DSYRNDYWHQ----RLEEFSDEVPLKRSRISKKDEVFC 296
Score = 56 (24.8 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 1084 RQMYLLNCLEASL-AICGICNDPPEDA-VVSICGHVFCNQCI 1123
R YL + E S C IC + V+ +CGH C C+
Sbjct: 1036 RLKYLKHLKEDSADKPCPICQTQDDVRYVMMVCGHFVCQHCL 1077
Score = 41 (19.5 bits), Expect = 1.7e-22, Sum P(5) = 1.7e-22
Identities = 23/121 (19%), Positives = 50/121 (41%)
Query: 895 LDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 954
LD ++ NH+T + A W + + + ++ ++++ S L + ++ +
Sbjct: 769 LDLLSTMVNHKTSLHDAIWN-KVRDDFFRQNISVER-LENVNSMAGMLYF--MDIWHNKL 824
Query: 955 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 1014
+K + + ++ L+ V++ G LL E IIN V + D D +
Sbjct: 825 QNLKSTL----IAEFEFLKGVMQQACEAIKTGVLLSME-IINFIENVTVCHLTDILDANK 879
Query: 1015 D 1015
D
Sbjct: 880 D 880
Score = 38 (18.4 bits), Expect = 4.0e-12, Sum P(5) = 4.0e-12
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1256 SIKLGGEKAIVFSQWTKMLDLLEASLK 1282
S++ G K+I+ TK+ ++E LK
Sbjct: 1105 SVRPGAHKSIIGDFSTKISSVVELVLK 1131
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 194 (73.4 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F + F S K ++L VLK +LRR K D E +LPPK +
Sbjct: 365 FNSAEDFDSWFDTKNCLGDQKLVERLHTVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 188 (71.2 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 1278 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHV 1335
E LKD I + G+ ++A++ FN +P S + ++S +A LG+N+ +A V
Sbjct: 545 EEILKDFKIIFHEYQGS------NEAIEAFN-IPNSSKFIFMLSTRAGGLGINLASADVV 597
Query: 1336 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+L D WNP + QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 598 ILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 641
Score = 94 (38.1 bits), Expect = 5.5e-20, Sum P(5) = 5.5e-20
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 1241 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1300
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1301 DKAVKDFNTL 1310
++ +KDF +
Sbjct: 545 EEILKDFKII 554
Score = 91 (37.1 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 818
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 819 VSME 822
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 7.9e-15, Sum P(5) = 7.9e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ E E
Sbjct: 879 ANEKYGRDDIDNIAREVE 896
Score = 37 (18.1 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 435 SLLSQNQVVHAK---EEHEDLILESKR 458
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISVGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 219 (82.2 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 51/150 (34%), Positives = 83/150 (55%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G + ++FSQ T+MLD+L+ + Y R+DG++ R A+K+F P V V ++S
Sbjct: 364 GHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-VFVFLLST 422
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 423 RAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 482
Query: 1381 LQQKKREMVASAF--GEDETGGQQTRLTVD 1408
K ++ + G G Q+ D
Sbjct: 483 KAASKLQLTNAIIEGGHFTLGAQKPAADAD 512
Score = 136 (52.9 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 47/176 (26%), Positives = 77/176 (43%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPK 229
Query: 950 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
+ F + I K +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVGDFVQRYQ-DIEKESDSA-SELHKLLQPFLLRRVKA-----EVATELPKKTEVVLYH 282
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+ ++ +Y + + D F+ A QN +L +LR+ DHP L +G
Sbjct: 283 GMSALQKKYYKAILMKDLDAFESEMAKKVKLQN------VLSQLRKCVDHPYLFEG 332
Score = 84 (34.6 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 693
G+ + L +Q ++W+ + HC G IL D+ GLGKT TIAL +
Sbjct: 42 GLTGIRLRSYQLEGVNWLAR----CFHCQNGCILGDEMGLGKTCQTIALFI 88
Score = 80 (33.2 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 818
L++CP SVL W EE+ + G LS ++Y G + D + ++F V++TTY I
Sbjct: 101 LILCPLSVLSNWTEEMER--FAPG-LSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
Score = 43 (20.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLLK 526
K+LD + +M ++K +++ S L K
Sbjct: 298 KDLDAFESEMAKKVKLQNVLSQLRK 322
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 251 (93.4 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 63/165 (38%), Positives = 96/165 (58%)
Query: 1228 DSNDLHGGDTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
D +L D LD++ + K+ K I +K G + ++FSQ +MLD+L LK S
Sbjct: 1047 DECELGAKDLLDSMIRASGKLVLLDKLLI-RLKETGHRVLIFSQMVRMLDILADYLKGRS 1105
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTLPEVSV-MIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
Q++RLDG+MS R +A+ FN + ++S KA LG+N+ A V++ D WNP
Sbjct: 1106 FQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNP 1165
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
+ QA RAHRIGQ V++ RL K++VE+ IL ++ K++MV
Sbjct: 1166 QNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDIL--ERAKQKMV 1208
Score = 152 (58.6 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 47/176 (26%), Positives = 83/176 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + R ++GTP+QN++ +L++ FL
Sbjct: 880 LGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMP 939
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F K F + +N +L +VLK +LRR K D E +LPPK +
Sbjct: 940 NKFTSLKDFQDQYS-DLKENDQ--IAQLHSVLKPHLLRRIKK---DVEK--SLPPKTERI 991
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+VD ++ ++ +Y + + F+E K +NI+ L++ C+HP L
Sbjct: 992 LRVDLSNVQKKYYKWILTKN---FQELNKGKGEKTTLLNIMT---ELKKTCNHPYL 1041
Score = 79 (32.9 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
P + A L +Q L+W+V S ++ + ILAD+ GLGKTI TI+ +
Sbjct: 747 PSWISAGTLRDYQMEGLNWLVH---SWMNNTNVILADEMGLGKTIQTISFL 794
Score = 62 (26.9 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 748 SFNFVEQ-AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 806
S+ F EQ KG P LVV P S + W E + ++V+VY G+ +++D L
Sbjct: 795 SYLFNEQDIKG-PF---LVVVPLSTIENWQREFAKWAPA---MNVIVYTGTGQSRDIIRL 847
Query: 807 AKF 809
+F
Sbjct: 848 YEF 850
Score = 49 (22.3 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 962 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP-PKVIMLKQV-DFTDEERDFYSQ 1019
S N KG KKLQ +K I+ E I K +M +++ D+T ER +Q
Sbjct: 581 SLNNFKGNKKLQNYVKGILDNIQWRQEASKEDIEQADITKELMKQEIQDYTIVER-VIAQ 639
Query: 1020 LEI-NSRDQ 1027
E+ SRDQ
Sbjct: 640 REVAQSRDQ 648
Score = 37 (18.1 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 83 SGGLGDSSSQLEPTEQKCSPLQTCSAS 109
SGG G S S L +E S +AS
Sbjct: 495 SGGGGGSGSGLSTSETTNSSTAAATAS 521
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 251 (93.4 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 53/151 (35%), Positives = 89/151 (58%)
Query: 1239 DN-ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1297
DN I D + + + +K G + ++FSQ+T MLD++E L+ + RLDG +V
Sbjct: 645 DNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAV 704
Query: 1298 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357
R + DFN + V ++S KA +G+N+ AA ++ D+ +NP + QA DR HR+
Sbjct: 705 NVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRM 764
Query: 1358 GQTRPVSVLRLTVKNTVEDRILALQQKKREM 1388
GQ RPV++ RL ++T+E+ IL ++K ++
Sbjct: 765 GQQRPVTIYRLISESTIEEGILMAAEEKLKL 795
Score = 137 (53.3 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 50/189 (26%), Positives = 91/189 (48%)
Query: 893 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV--- 949
V+ DEA +KN TQ + A+ R L+GTP+QN + +L S F+ FA
Sbjct: 419 VIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIE 478
Query: 950 -YKS-FCSMIKVPISKNPVKGYKKLQA-----VLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
KS F K ++ V +++ Q ++K +LRR K +L NLP K+
Sbjct: 479 DIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLK-----NLPKKLS 533
Query: 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 1062
++++V + +++ +Y +L D + I +M+ +R+ +HPLL++
Sbjct: 534 LVEKVPMSSQQKIYYHELV----DYYSNNKGEVCSSSERAGIAIMM-EMRRIANHPLLMR 588
Query: 1063 GFDSNSLLR 1071
+ +++ LR
Sbjct: 589 HYFTDANLR 597
Score = 82 (33.9 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKE 695
L +Q I L+W+ ++ GILAD+ GLGKTI IA + LKE
Sbjct: 289 LADYQIIGLNWLTVMHKQEMN---GILADEMGLGKTIQVIAFLAYLKE 333
Score = 75 (31.5 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 30/93 (32%), Positives = 41/93 (44%)
Query: 743 GSSAKSFNFVEQAK--GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-- 798
G + + F+ K G A L+V P+S L W E+ L V YHGS
Sbjct: 319 GKTIQVIAFLAYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCPE---LVVEKYHGSQDE 375
Query: 799 RTKDPCELAK-----FDVVITTYSIVSMEVPKQ 826
R + AK FDV++TTY IV P++
Sbjct: 376 RRRMRGRFAKDGFTGFDVLLTTYHIVG-STPEE 407
Score = 40 (19.1 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 418 NSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE 450
N+ FK + + +I +++S QV +HE
Sbjct: 605 NASSFKKTNEQYIFEELAVMSDFQVYQMMNKHE 637
Score = 38 (18.4 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1063 GFDSNSLLRSSVEMAKKLPQERQMY 1087
GF +L ++ + P+ER+M+
Sbjct: 387 GFTGFDVLLTTYHIVGSTPEERKMF 411
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 1041
D D + ++LE+ +++ + Y AA + ++
Sbjct: 62 DGNDSQTPKKTKLELTVKEKEERYMAAAKISPHF 95
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 203 (76.5 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 48/147 (32%), Positives = 81/147 (55%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-------- 1312
G + ++FSQ T LD+L+ ++ Y RLDG++ R A+K+F+ E
Sbjct: 393 GHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVD 452
Query: 1313 ---VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1369
V ++S +A +GLN+VAA V+ + WNP + QA+ RAHRIGQ V + L
Sbjct: 453 GSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLV 512
Query: 1370 VKNTVEDRILALQQKKREMVASAFGED 1396
+++VE+ IL ++K ++ + G++
Sbjct: 513 TEHSVEEVILRRAERKLQLSHNVVGDN 539
Score = 185 (70.2 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 51/189 (26%), Positives = 90/189 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWG-LRAKRRWCLSGTPIQNAIDDLYSYFRFLR 943
L+++ W ++DEAQ +KN + + RR ++GTPIQN + +L++ F
Sbjct: 178 LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCM 237
Query: 944 YDPFAVYKSFCSMIKVP---IS----KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
F F S K +S N + YK L+ +L MLRRTK L++ ++
Sbjct: 238 PLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLV- 296
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
LPP + V ++ Y+ + E ++ G+ N+ ++ ++++LR+AC
Sbjct: 297 LPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGS---NHTSLQNIVIQLRKACS 353
Query: 1057 HPLLVKGFD 1065
HP L G +
Sbjct: 354 HPYLFPGIE 362
Score = 67 (28.6 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 625 LQVAMQGISQPNAEAS--APD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILAD 678
L+ A + I + A+ S PD GV A L HQ +SW++QK ++ + D
Sbjct: 21 LEAAAEIILEKEAKFSNTPPDCSEFGVTAT-LKPHQVEGVSWLIQKYLLGVNVV--LELD 77
Query: 679 DQGLGKTISTIALI 692
GLGKT+ I+ +
Sbjct: 78 QMGLGKTLQAISFL 91
Score = 64 (27.6 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 29/96 (30%), Positives = 43/96 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAA-GT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-- 798
G + ++ +F+ K R G LV+CP SV W E+ N+ T +L VL Y G
Sbjct: 82 GKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEI-NRFTP--NLEVLRYVGDKYC 138
Query: 799 ---RTKDPCELAK---------FDVVITTYSIVSME 822
K + K FDV++TTY I ++
Sbjct: 139 RLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVD 174
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 209 (78.6 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1144 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1202
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1203 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1262
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1263 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1308
Score = 209 (78.6 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 939 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 998
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 999 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1050
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 1051 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 1106
Query: 1065 DSNSLLRSSVEMAKKLPQE 1083
+ L+ E +PQ+
Sbjct: 1107 EEKILMEFR-EACHIIPQD 1124
Score = 68 (29.0 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 813 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 852
Score = 67 (28.6 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 806 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 862
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 863 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 918
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 919 AYKFDALITTFEMILSDCPE 938
Score = 54 (24.1 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 25/95 (26%), Positives = 38/95 (40%)
Query: 17 DEFADDQGLSIDMDTL---LGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQ 73
D DD + D + LG+ D++ G + N S +LV ++ +
Sbjct: 18 DSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGNSSASDLVPPPEETASTE 77
Query: 74 LQSEISGA--ESGGLGDSSSQLEPTEQKCSP-LQT 105
L E + ES L D ++Q EQ P LQT
Sbjct: 78 LPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQT 112
Score = 51 (23.0 bits), Expect = 4.6e-29, Sum P(5) = 4.6e-29
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGG-LGDSS-SQLEPTEQKCSPLQTCSA 108
D S ++QD + + +G S+L +++ GG +G+SS S L P P +T S
Sbjct: 22 DDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGNSSASDLVPP-----PEETAST 76
Query: 109 SFSDWFNQNSGTCCPESVGISQFET 133
+ S PES+ + + T
Sbjct: 77 ELP----KESTAPAPESLTLHDYTT 97
Score = 49 (22.3 bits), Expect = 2.3e-29, Sum P(5) = 2.3e-29
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 483 PRVLNEDELPSVRPEEEGEKKRRKKSS 509
Score = 43 (20.2 bits), Expect = 8.8e-13, Sum P(5) = 8.8e-13
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1330 VAACHVLLLDL--WWNPTTEDQAIDRA---HRIGQT 1360
+A C L+L WW P D + R H + QT
Sbjct: 1912 LALCQPPGLELPKWWEPVRHDGELLRGAARHGVSQT 1947
Score = 42 (19.8 bits), Expect = 3.8e-28, Sum P(5) = 3.8e-28
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 433
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVGNS 61
Score = 39 (18.8 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQAAVQRIVQPSRPVKQLVLQPVKGSAPAGNPGAAGPP 268
Score = 37 (18.1 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 530 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 561
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 282 (104.3 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 62/160 (38%), Positives = 94/160 (58%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K G K +VFSQ T MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 591 LPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDV 650
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 651 FLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 710
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L+ N+L
Sbjct: 711 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLS-QSKNFL 749
Score = 117 (46.2 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 331 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 390
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 391 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 450
Query: 1005 KQVDFTDEERDFYSQL 1020
+++ FY+ +
Sbjct: 451 VYAPLCNKQEIFYTAI 466
Score = 68 (29.0 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 674 GILADDQGLGKT---ISTIALILKERPP 698
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 227 GILADEMGLGKTVQCIATIALMIQRGVP 254
Score = 61 (26.5 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 24/129 (18%), Positives = 60/129 (46%)
Query: 504 LDGVKEDMEAEIKTRSMASHLLK--LSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 561
L ED+ A+ + +++ H+L L+P ++ SD V + ++ + +
Sbjct: 403 LSETAEDIIAKEREQNVL-HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEI 461
Query: 562 NQSLVLGKTLSMNRSACSNHSVAL---GKPVVTSQHS-SYSDYPGYPGVPLTGLGGMKSK 617
+ ++ +T++ +C +V L G+P S+ S +YS+ +P + ++ +
Sbjct: 462 FYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPE 521
Query: 618 ASDERLILQ 626
+ ER +++
Sbjct: 522 VNRERTVVE 530
Score = 54 (24.1 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 29/123 (23%), Positives = 58/123 (47%)
Query: 957 IKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 1007
++VP K V Y L Q + T ++ RT + + E + P PK K +
Sbjct: 441 LEVP-PKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSI 499
Query: 1008 DFTDEERDFYSQLE-----INSRDQFKEYAAAGTVK-QNYVNILL--MLLRLRQACDHPL 1059
++++ ++ F S+LE I + G + ++ VN+ L +++ LR+ C+HP
Sbjct: 500 NYSELDQ-FPSELEKLISQIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPY 558
Query: 1060 LVK 1062
+++
Sbjct: 559 MIE 561
Score = 45 (20.9 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 363 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 422
Query: 1045 LLMLL 1049
L +L
Sbjct: 423 LHQIL 427
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 209 (78.6 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1142 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1200
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1201 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1260
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1261 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1306
Score = 203 (76.5 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 997 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1048
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 1049 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 1104
Query: 1065 DSNSL 1069
+ L
Sbjct: 1105 EEKIL 1109
Score = 68 (29.0 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 850
Score = 67 (28.6 bits), Expect = 3.6e-29, Sum P(5) = 3.6e-29
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 804 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 860
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 861 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 916
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 917 AYKFDALITTFEMILSDCPE 936
Score = 60 (26.2 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGG-LGDSS-SQLEPTEQKCSPLQTCSA 108
D S ++QD + + +G S+L +++ GG +G+SS S+L P ++ +P +
Sbjct: 22 DDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGNSSASELVPPPEETAPTE---- 77
Query: 109 SFSDWFNQNSGTCCPESVGISQFETPGCS 137
++ S PES+ + + T S
Sbjct: 78 -----LSKESTAPAPESITLHDYTTQPAS 101
Score = 48 (22.0 bits), Expect = 2.9e-29, Sum P(5) = 2.9e-29
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTR--SMASHLLKLSPE-SIQSNSSDCK 540
P LN+ EL V+ + E E K R S L + P+ S S +S K
Sbjct: 481 PRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTK 528
Score = 44 (20.5 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLS 438
+F D DD F + V+ +PI+EA+G SS D + +D G +G S S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVGNS----S 62
Query: 439 QNQVVHAKEE 448
+++V EE
Sbjct: 63 ASELVPPPEE 72
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 1130 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIP-TDYSDSKLVEAPS 1181
DD+ K+ S SS S ++ ++S + + +E TD S SKL + S
Sbjct: 2067 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEES 2119
Score = 41 (19.5 bits), Expect = 1.8e-12, Sum P(5) = 1.8e-12
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1338 LDLWWNPTTEDQAIDRA---HRIGQT 1360
L WW P D + R H + QT
Sbjct: 1920 LPKWWEPVRHDGELLRGAARHGVSQT 1945
Score = 41 (19.5 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQAAVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 268
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 528 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 559
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 215 (80.7 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G + ++FSQ T+MLD+L+ L Y R+DG++ R A+K+F P + ++S
Sbjct: 365 GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLST 423
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
+A +G+N+ AA V+ D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 424 RAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 483
Query: 1381 LQQKKREMVASAF--GEDETGGQQTRLTVD 1408
K ++ + G G Q+ D
Sbjct: 484 KAASKLQLTNTIIEGGHFTLGAQKPAADAD 513
Score = 136 (52.9 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 950 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 283 GMSALQKKYYKAILMKDLDAFENETAKKVKLQN------VLSQLRKCVDHPYLFDGVE 334
Score = 88 (36.0 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 627 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 678
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 679 DQGLGKTISTIALIL 693
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 817
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 818 I 818
I
Sbjct: 157 I 157
Score = 44 (20.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 44/184 (23%), Positives = 72/184 (39%)
Query: 428 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 487
SF+ P L S+ QV + ++D+ ES+ A ++ R ++ L
Sbjct: 220 SFV--EPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRV--KAEVATELPRK 275
Query: 488 RQYFPYAQPSTLNKKELDGV-KEDMEA-EIKTRSMASHLLKLSPESIQSNSSDCKSH--V 543
+ Y S L KK + +D++A E +T K+ +++ S C H +
Sbjct: 276 TEVVIYHGMSALQKKYYKAILMKDLDAFENETAK------KVKLQNVLSQLRKCVDHPYL 329
Query: 544 DD--EPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQH--SSYSD 599
D EP+ + D A S + +L K L+ S H V L + Y D
Sbjct: 330 FDGVEPEPFEIGDHLIEA-SGKLHLLDKLLAFLYS--KGHRVLLFSQMTQMLDILQDYLD 386
Query: 600 YPGY 603
Y GY
Sbjct: 387 YRGY 390
Score = 39 (18.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 511 MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT 570
++ ++K S H+L + E ++S KS P ++ D + + NQS +L KT
Sbjct: 138 LQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-NQSSLLHKT 191
Query: 571 LSMNRSACSNHSVALGKPVVTSQHSSYS 598
LS S + G P+ S YS
Sbjct: 192 LSEFSVVFS--LLLTGTPIQNSLQELYS 217
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 245 (91.3 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 49/138 (35%), Positives = 84/138 (60%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G++ ++FSQ+T++LD+L+ +K ++++ R DG+ V R + F ++V ++S
Sbjct: 777 GDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLST 836
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
KA G+N+ A V+L D+ +NP + QA DRAHR+GQ + V+V + VK+T+E+ I
Sbjct: 837 KAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQR 896
Query: 1381 LQQKKREMVASAFGEDET 1398
L K + A+ G ET
Sbjct: 897 LANAKIALDATLSGNAET 914
Score = 135 (52.6 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 60/214 (28%), Positives = 98/214 (45%)
Query: 891 FRV-VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
F V V DE +KN ++ R + A R L+GTP+QN + +L S F+ F
Sbjct: 512 FNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDY 571
Query: 950 YKSFCSMIKVPISKNPVKGYKKL----QAVLKTIM------LRRTKGTLLDGEPIINLPP 999
+I + K+P +++ Q V + M LRR K +LD LP
Sbjct: 572 GLKSLDVI-FTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDA-----LPK 625
Query: 1000 KVIMLKQVDFTDEER----DFYSQLEINSR-DQ--FK-EYAAAGTVKQNYVNILLMLLRL 1051
K +++ +F++EER DF S+ +NS D+ K + + +L++L
Sbjct: 626 KTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQL 685
Query: 1052 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ 1085
R+ DHP+L + + +LR +MAK + E Q
Sbjct: 686 RKLADHPMLFRIHYKDDILR---QMAKAIMNEPQ 716
Score = 75 (31.5 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 632 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 690
I+ P A S PD + L +Q I ++W+ L GILAD+ GLGKT TIA
Sbjct: 374 ITTPPASFS-PD----IKLQDYQIIGINWLYLLYELKL---AGILADEMGLGKTCQTIA 424
Score = 56 (24.8 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 817
LV+ P S + W E K K L + +Y+GS R + ++V++TTY
Sbjct: 439 LVIAPASTMENWLREFA-KFCPK--LKIELYYGSQVEREEIRERINSNKDSYNVMLTTYR 495
Query: 818 IVS 820
+ +
Sbjct: 496 LAA 498
Score = 44 (20.5 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 53 SLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSA-SFS 111
SL ++ V G +S LQ+ SE+S SS + SP T SA S +
Sbjct: 35 SLSEATEKANVMGGGMNSRLQILSEMSKRVQATAPISSLEHFKQLSDISPSFTSSANSIN 94
Query: 112 DWFNQNSGTCCPESVGISQFETPGCSTASSFSE 144
+N SG+ E++ TP T S F +
Sbjct: 95 QPYNY-SGSL--ENL----VPTPSAGTPSQFMD 120
Score = 44 (20.5 bits), Expect = 3.6e-29, Sum P(6) = 3.6e-29
Identities = 29/126 (23%), Positives = 52/126 (41%)
Query: 372 SSRTKQMVFAKDEGNDDLFPCWSTVSDS-VEPIDEAVGRNS--SYHDGCNSFPFKDSGQS 428
SSR A D+ NDD++ + +D ID A + Y + C++ Q
Sbjct: 200 SSRKTYEPEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCST-------QD 252
Query: 429 FIGLSPSLLSQNQVVHAKEEHEDL--ILESKRAR-FCQEICDGSSSRSPIDGRHLSLNLN 485
++ L++ + + AK DL L K+ R + G ++P+ R + + +
Sbjct: 253 LADMTGCTLAEAEFMVAKRPFPDLESALVVKQPRPVIPKGRRGRREKTPLGPRLVGICME 312
Query: 486 GSRQYF 491
R YF
Sbjct: 313 IMRGYF 318
Score = 40 (19.1 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 25/110 (22%), Positives = 46/110 (41%)
Query: 420 FPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRH 479
F K S +S +LLS+ +V AK +L K++ ++ D ++ I
Sbjct: 580 FTMKKSPES--DFERALLSEQRVSRAKMMMAPFVLRRKKS----QVLDALPKKTRII-EF 632
Query: 480 LSLNLNGSRQYFPYAQPSTLNKKELDGVKE---DMEAEI-KTRSMASHLL 525
+ R+Y +A ++N + V + D A + K +S A +L
Sbjct: 633 CEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVL 682
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 226 (84.6 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 1226 PGDSNDLHGGDT--LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1283
P + N+ G L I + I + ++ G + ++FSQ +MLD+L L
Sbjct: 759 PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 818
Query: 1284 SSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1342
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D W
Sbjct: 819 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 878
Query: 1343 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
NP + QA RAHRIGQ + V++ RL K TVE+ I+ ++ K++MV
Sbjct: 879 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII--ERAKKKMV 923
Score = 168 (64.2 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 49/183 (26%), Positives = 94/183 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 595 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 654
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F ++ F + K GY+ L VL+ +LRR K D E +LP KV +
Sbjct: 655 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 705
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ + ++ +Y I +R+ +K A GT + + L +++ L++ C+H L+K
Sbjct: 706 LRVEMSALQKQYYKW--ILTRN-YKALAK-GT-RGSTSGFLNIVMELKKCCNHCYLIKPP 760
Query: 1065 DSN 1067
+ N
Sbjct: 761 EEN 763
Score = 88 (36.0 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 52/201 (25%), Positives = 85/201 (42%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 555
+L ++++ G+K+ + K + L K+SPE ++ +C+ + E I+E +
Sbjct: 330 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEY--FNCQQELASELNKQYQIVERV 387
Query: 556 ---SQPARSNQSLVLGKTLSMNRSACSNHSVAL-GKPVVTSQHSSYSDYPGYPGVPLTGL 611
+PA SN+ L K + + S CS AL GK S S+ +P
Sbjct: 388 IGNRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKF-QSCIDSFHSRNNSKTIPTREC 446
Query: 612 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 671
+K + L Q A G N E L +Q L+W+ +
Sbjct: 447 KALKQRPRFVALKKQPAYLG--GENLE-----------LRDYQLEGLNWLAHSWCN--RS 491
Query: 672 SGGILADDQGLGKTISTIALI 692
+ ILAD+ GLGKTI TI+ +
Sbjct: 492 NSVILADEMGLGKTIQTISFL 512
Score = 51 (23.0 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 813
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 526 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 814 TTYSIV 819
TTY I+
Sbjct: 583 TTYEIL 588
Score = 50 (22.7 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 46 KSSPGDLSLR-NLSQDELVQDV-GSHSNLQLQSEISGAESG-GLG-DSSSQLEPTEQK 99
KS D SL N S ++ GS S Q +SE G++ G G G +S+S E +E +
Sbjct: 6 KSQEEDSSLHSNASSHSASEEASGSDSGSQSESE-QGSDPGSGHGSESNSSSESSESQ 62
Score = 49 (22.3 bits), Expect = 5.6e-29, Sum P(6) = 5.6e-29
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 54 LRNLSQDELVQDVGSHSNLQLQS---EISGAESGGLGDSSSQLEP 95
+RN + + +D HSN S E SG++SG +S +P
Sbjct: 1 MRNKDKSQ-EEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDP 44
Score = 39 (18.8 bits), Expect = 3.6e-11, Sum P(4) = 3.6e-11
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 891 FRVVLDEAQSIKNHRTQVARACWGLRAKRRW 921
F+ +D S N +T R C L+ + R+
Sbjct: 425 FQSCIDSFHSRNNSKTIPTRECKALKQRPRF 455
Score = 37 (18.1 bits), Expect = 4.4e-29, Sum P(6) = 4.4e-29
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 271 DPSSFNFQHLLSSEETATKPK 291
+PS FN + SS + PK
Sbjct: 122 EPSRFNIKEEASSGSESGSPK 142
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 253 (94.1 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 56/165 (33%), Positives = 96/165 (58%)
Query: 1238 LDNISD-----ENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRL 1291
+DNISD E+ K+ S+ + ++ G + ++FSQ KMLD++E L++ + + RL
Sbjct: 462 IDNISDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRL 521
Query: 1292 DGTMSVFA-RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1350
DGT++ A R+K + F T ++ +++ + +G+ + A V++ D WNP T+ QA
Sbjct: 522 DGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQA 581
Query: 1351 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1395
+DRA+RIGQT V + RL TVE++I Q K ++ G+
Sbjct: 582 VDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGD 626
Score = 119 (46.9 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 948
W V+LDEA IK T+ A++ + AK R L+GTP+QN + ++++ F F +
Sbjct: 231 WDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 949 VYKSFCSMIKVPIS----KNPVKGYK--------KLQAVLKTIMLRRTK 985
K+F + + PI+ K+ G K L ++K LRRTK
Sbjct: 291 TSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTK 339
Score = 82 (33.9 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSI 818
TL+V PTS+++ W E K T + V +HGSS+T+ L + V+ITTY +
Sbjct: 157 TLLVMPTSLIKNWVREFA-KWTP--GMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 819 V 819
+
Sbjct: 214 L 214
Score = 73 (30.8 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 673 GGILADDQGLGKTISTIALI 692
GGILADD GLGKTI I+ +
Sbjct: 126 GGILADDMGLGKTIQVISFL 145
Score = 43 (20.2 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1013 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+ D Y++ S DQ KE T + + + L++ CDHP L+
Sbjct: 391 QEDIYNKFI--SLDQIKELLT--TTRSPLAELTV----LKKLCDHPRLL 431
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 1366 LRLTVKNTVEDRIL-ALQQKKREMVASAFGEDE 1397
+R T +V+D + +++ KKR++++ E+E
Sbjct: 1095 IRSTPNESVDDSFVHSVRTKKRQVISDTEEEEE 1127
Score = 39 (18.8 bits), Expect = 7.2e-22, Sum P(4) = 7.2e-22
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 62 LVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDW 113
L D+G +Q+ S +SG L + + + PT S ++ F+ W
Sbjct: 129 LADDMGLGKTIQVISFLSGMYDAELANHTLLVMPT----SLIKNWVREFAKW 176
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 211 (79.3 bits), Expect = 5.3e-29, Sum P(5) = 5.3e-29
Identities = 56/166 (33%), Positives = 85/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 717 LPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK-PDS 775
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ + V V RL +
Sbjct: 776 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 835
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGG--QQTRLTVDDL 1410
N+ E DR L L K + + + E GG Q ++ ++DL
Sbjct: 836 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDL 881
Score = 200 (75.5 bits), Expect = 5.3e-29, Sum P(5) = 5.3e-29
Identities = 57/188 (30%), Positives = 96/188 (51%)
Query: 883 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 942
G L + W V++DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 510 GELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFL 569
Query: 943 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002
F +F ++ V+ KLQA+LK +MLRR K D E L PK
Sbjct: 570 EPLRFPSESTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--KLAPKEE 621
Query: 1003 MLKQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 1061
+ +V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+
Sbjct: 622 TIIEVELTNIQKKYYRAILEKN----FS-FLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 676
Query: 1062 KGFDSNSL 1069
KG + L
Sbjct: 677 KGAEEKIL 684
Score = 67 (28.6 bits), Expect = 5.3e-29, Sum P(5) = 5.3e-29
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q L+W++ + +C ILAD+ GLGKTI +I +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 425
Score = 62 (26.9 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 797
G + +S F+ + G L++ P S + W E R ++V+VYHGS
Sbjct: 416 GKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWT----DINVVVYHGS 467
Score = 47 (21.6 bits), Expect = 5.3e-29, Sum P(5) = 5.3e-29
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 502 KELDGVKEDMEAEIKTRSMASHLL-KLSPESIQSN-SSDCKSHVDDEPDICILEDISQPA 559
K+ D K +++K ++ L+ L + + N SSD S + P + + SQ
Sbjct: 101 KDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKR 160
Query: 560 RSNQSL 565
RSN+ +
Sbjct: 161 RSNRQI 166
Score = 42 (19.8 bits), Expect = 5.5e-28, Sum P(5) = 5.5e-28
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 175 SHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEG 215
S D+R +D PS+I + D+ + GN+L EG
Sbjct: 356 SRPDTRRLDRPPSNIWKKIDQSRDYKN---GNQLREYQLEG 393
Score = 39 (18.8 bits), Expect = 5.3e-29, Sum P(5) = 5.3e-29
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 37 EEEKQPDRVKSSPGD 51
+EEK+ R+KS P D
Sbjct: 88 KEEKKGRRMKSKPKD 102
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 201 (75.8 bits), Expect = 5.8e-29, Sum P(4) = 5.8e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1044 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1103
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1104 TRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1155
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1156 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1210
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1211 AEEKIL 1216
Score = 200 (75.5 bits), Expect = 5.8e-29, Sum P(4) = 5.8e-29
Identities = 51/166 (30%), Positives = 85/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1249 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1307
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1308 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1367
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDET--GGQQ-TRLTVDDL 1410
N+ E + K + ++ S G + G QQ ++ ++DL
Sbjct: 1368 NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDL 1413
Score = 74 (31.1 bits), Expect = 5.8e-29, Sum P(4) = 5.8e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 798
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 948 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1003
Query: 799 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 825
RT KDP KF +ITT+ ++ + P+
Sbjct: 1004 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1043
Score = 64 (27.6 bits), Expect = 5.8e-29, Sum P(4) = 5.8e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 918 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 957
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 250 (93.1 bits), Expect = 6.1e-29, Sum P(3) = 6.1e-29
Identities = 54/136 (39%), Positives = 85/136 (62%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
GG ++FSQ T+MLD+L+ L+ Y RLDG++ R+ A+K+F+T +V + ++S
Sbjct: 351 GGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFST-KDVFIFLLS 409
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
KA +G+N+ AA V+ +D +NP + QA RAHRIGQTRPV V+RL ++T+E+ I
Sbjct: 410 TKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIY 469
Query: 1380 ALQQKKREMVASAFGE 1395
+ K + + E
Sbjct: 470 SRAVSKLRLTDTVIEE 485
Score = 138 (53.6 bits), Expect = 6.1e-29, Sum P(3) = 6.1e-29
Identities = 48/179 (26%), Positives = 82/179 (45%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR---YDP 946
W +V+DEA +KN + + + R L+GTPIQN + ++YS F++ + P
Sbjct: 157 WKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLP 216
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
AV + F + I P +L VL+ +LRR K E LP K ++
Sbjct: 217 EAV-EDFVNAY-ADIQTEPAL-VDELHQVLQPFLLRRVKA-----EVAAELPKKTELVVF 268
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
+ ++ +Y + + D F+ T + +L +L++LR+ DHP L G +
Sbjct: 269 HGLSALQKRYYKAILMRDLDAFR------TDQSTKTRLLNVLMQLRKCVDHPYLFDGVE 321
Score = 81 (33.6 bits), Expect = 6.1e-29, Sum P(3) = 6.1e-29
Identities = 35/138 (25%), Positives = 64/138 (46%)
Query: 693 LKERPPSFRTEDDNKRQ-LETLNLDEED-NGIQVNGLDLVKQESDYCRVVPN---GSSAK 747
+ E+ S TE+D K+ L ++L +G++ L + Q+ C + G + +
Sbjct: 12 IPEKDKSELTENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQG--CILGDEMGLGKTCQ 69
Query: 748 SFNFVEQAKG--RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 805
+ + + A+G + LV+CP +VL W +EL S LSV+ Y G + +
Sbjct: 70 TISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPS---LSVICYTGDKEKRAELQ 126
Query: 806 L-----AKFDVVITTYSI 818
+F V++TTY +
Sbjct: 127 QNLKSDPRFHVLLTTYEM 144
Score = 65 (27.9 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696
G+ A+ L +Q + W+ + C IL D+ GLGKT TI+L+ R
Sbjct: 29 GLGAIHLRPYQLDGVKWLSLCMKNQQGC---ILGDEMGLGKTCQTISLLAYAR 78
Score = 37 (18.1 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1069 LLRSSVEMAKKLPQERQMYLLNCLEA 1094
L R E+A +LP++ ++ + + L A
Sbjct: 248 LRRVKAEVAAELPKKTELVVFHGLSA 273
Score = 37 (18.1 bits), Expect = 9.2e-07, Sum P(3) = 9.2e-07
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 1352 DRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1383
D I +R VS LRLT E R L Q
Sbjct: 462 DTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQ 493
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 229 (85.7 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 57/168 (33%), Positives = 96/168 (57%)
Query: 1226 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1282
P D+N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 767 PPDNNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 825
Query: 1283 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 826 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 885
Query: 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 886 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 931
Score = 163 (62.4 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 603 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 662
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 663 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 713
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 714 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 768
Query: 1065 DSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
D+N + + ++ LL+ L
Sbjct: 769 DNNEFYNKQEALQHLIRSSGKLILLDKL 796
Score = 71 (30.1 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 52/203 (25%), Positives = 79/203 (38%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 555
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 337 TLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 394
Query: 556 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 609
A SNQ G K + S CS AL + Y P
Sbjct: 395 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFK 452
Query: 610 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 669
+K + R VA++ QP S G + L +Q L+W+
Sbjct: 453 DCKVLKQRP---RF---VALK--KQP----SYIGGHEGLELRDYQLNGLNWLAHSWCKGN 500
Query: 670 HCSGGILADDQGLGKTISTIALI 692
C ILAD+ GLGKTI TI+ +
Sbjct: 501 SC---ILADEMGLGKTIQTISFL 520
Score = 60 (26.2 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSR--------TKDPCELAKFDVVI 813
L+V P S L W E++ T ++ +VY G +SR T + KF++++
Sbjct: 534 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILL 590
Query: 814 TTYSIV 819
TTY I+
Sbjct: 591 TTYEIL 596
Score = 51 (23.0 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 46 KSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQT 105
KSSP L+++ + +++ Q Q + + SG DSSS E ++ S ++
Sbjct: 88 KSSPSILAVQ---RSAILKK--QQQQQQQQQHQASSNSGSEEDSSSS-EDSDDSSSEVKR 141
Query: 106 CSASFSDWFNQNSGTCCPESVG 127
DW Q SG+ P G
Sbjct: 142 KKHKDEDW--QMSGSGSPSQSG 161
Score = 51 (23.0 bits), Expect = 6.6e-27, Sum P(5) = 6.6e-27
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQP 558
K+++D +ED + E S + + + K+ DD ++C ED+ QP
Sbjct: 210 KRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCG-EDVPQP 266
Score = 46 (21.3 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 25 LSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGS------HSNLQLQSEI 78
L++ +L ++++Q + ++S S + S E D S H + Q
Sbjct: 94 LAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSG 153
Query: 79 SGAESGGLGDSSSQLEPTEQKCSPLQT 105
SG+ S DS S+ E + C ++
Sbjct: 154 SGSPSQSGSDSESEEEREKSSCDETES 180
Score = 46 (21.3 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 53 SLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGD-SSSQLEPTEQKC-SPLQTCSASF 110
S+RN S + D S S SG+ SG D SSSQ ++ S + S S
Sbjct: 9 SVRNSSGESSQSDDDSGS---ASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESE 65
Query: 111 SDWFNQNSGTCCPESVGISQF 131
SD +N P V ++F
Sbjct: 66 SDTSRENKVQAKPPKVDGAEF 86
Score = 42 (19.8 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 38/154 (24%), Positives = 56/154 (36%)
Query: 271 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYL 330
D SS SSE K KDE+ + + + S SG ++ K S + + DY
Sbjct: 125 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETES-DY- 182
Query: 331 DAKRQCED--------SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSR--TKQMVF 380
+ K + + SKNG I G I + + S R T + +
Sbjct: 183 EPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSY 242
Query: 381 AKDE----GNDDLFP-CWSTVSDSVEPIDEAVGR 409
+DE +DDL C V E E + R
Sbjct: 243 KEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIER 276
Score = 42 (19.8 bits), Expect = 8.6e-28, Sum P(6) = 8.6e-28
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 173 VGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 211
+ H D SV S +++ D+ G+ G+ GSS
Sbjct: 1 MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSS 39
Score = 38 (18.4 bits), Expect = 8.6e-28, Sum P(6) = 8.6e-28
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 421 PFKDSGQSFIGLSPSLLS-QNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPID 476
P K G F SPS+L+ Q + K++ + + + + D SSS D
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDD 134
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 19 FADDQGLSIDMDTLLGILEEE-KQPD 43
+ +D+ + D D LL + E+ QP+
Sbjct: 242 YKEDEEMKTDSDDLLEVCGEDVPQPE 267
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 202 (76.2 bits), Expect = 6.5e-29, Sum P(4) = 6.5e-29
Identities = 56/180 (31%), Positives = 94/180 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 881 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 940
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F+ F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 941 TQFSSEAEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 992
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 993 IEVELTNIQKKYYRAILEKN----FS-FLTKGASQSNTPNLLNTMMELRKCCNHPYLITG 1047
Score = 200 (75.5 bits), Expect = 6.5e-29, Sum P(4) = 6.5e-29
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ ++ GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1086 LPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSR-PDS 1144
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1145 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITR 1204
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE-TGG--QQ-TRLTVDDL 1410
N+ E + K + ++ S G D G QQ T+ ++DL
Sbjct: 1205 NSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDL 1251
Score = 67 (28.6 bits), Expect = 6.5e-29, Sum P(4) = 6.5e-29
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 801
G + +S F+++ G LV+ P S + W E S ++ +VYHGS ++
Sbjct: 785 GKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFG----SWTQMNTIVYHGSLASR 840
Query: 802 DP-------CELAK---------FDVVITTYSIVSMEVPK 825
C+ +K FD +ITT+ +V + P+
Sbjct: 841 QMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLSDCPE 880
Score = 64 (27.6 bits), Expect = 6.5e-29, Sum P(4) = 6.5e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 755 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSITFL 794
Score = 39 (18.8 bits), Expect = 2.4e-26, Sum P(4) = 2.4e-26
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 672 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720
SG + + +G TI+ I ++R PS D + ++ED+
Sbjct: 465 SGSLRSRSKGKPSTITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDS 513
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 205 (77.2 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 537 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 595
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 596 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 655
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 656 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 701
Score = 201 (75.8 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 332 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 391
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 392 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 443
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 444 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 498
Query: 1064 FDSNSL 1069
+ L
Sbjct: 499 AEEKIL 504
Score = 76 (31.8 bits), Expect = 7.1e-29, Sum P(3) = 7.1e-29
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 695 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 750
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 184 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 243
Query: 751 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 800
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 244 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 299
Query: 801 --KDPCELA-----KFDVVITTYSIVSMEVPK 825
KDP KF +ITT+ ++ + P+
Sbjct: 300 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 331
Score = 66 (28.3 bits), Expect = 7.7e-28, Sum P(3) = 7.7e-28
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 245
Score = 38 (18.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 1228 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1259
+ D+ DT + E E + KC + I++
Sbjct: 1431 EETDIADKDTKQDCDAEAETGSVKCELKDIEM 1462
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 204 (76.9 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 43/133 (32%), Positives = 77/133 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K + ++FSQ T++LD+++ + + Y R+DG+ R + FN + +
Sbjct: 638 LKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFI 697
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A +G+N+ A V+L D +NP + QA+DRAHRIGQ + V V R +N+VE
Sbjct: 698 FLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVE 757
Query: 1376 DRILALQQKKREM 1388
++I+ KK ++
Sbjct: 758 EKIVERAAKKLKL 770
Score = 190 (71.9 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 64/211 (30%), Positives = 108/211 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 945 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
F + F ++ + IS N K + +L +LK MLRR K ++ E +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ V + ++ YS + + D A G+ K +NIL+ +LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQKKLYSDILSKNIDVLN--AMTGS-KNQMLNILM---QLRKCCNHPYL 606
Query: 1061 VKGFDS------NSLLRSSVEMA---KKLPQ 1082
G + N L+ +S +M+ K LP+
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 81 (33.6 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 690 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 749
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 750 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 806
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 807 -AKFDVVITTYSIV 819
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
Score = 43 (20.2 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 1069 LLRSSVEMAKKLPQERQMYL 1088
L R VE+ + LP +R++Y+
Sbjct: 538 LRRLKVEVEQSLPPKREIYI 557
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 204 (76.9 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 43/133 (32%), Positives = 77/133 (57%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K + ++FSQ T++LD+++ + + Y R+DG+ R + FN + +
Sbjct: 638 LKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFI 697
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A +G+N+ A V+L D +NP + QA+DRAHRIGQ + V V R +N+VE
Sbjct: 698 FLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVE 757
Query: 1376 DRILALQQKKREM 1388
++I+ KK ++
Sbjct: 758 EKIVERAAKKLKL 770
Score = 190 (71.9 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 64/211 (30%), Positives = 108/211 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 945 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGTLLDGEPIINLPPK 1000
F + F ++ + IS N K + +L +LK MLRR K ++ E +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 1001 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 1060
+ V + ++ YS + + D A G+ K +NIL+ +LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQKKLYSDILSKNIDVLN--AMTGS-KNQMLNILM---QLRKCCNHPYL 606
Query: 1061 VKGFDS------NSLLRSSVEMA---KKLPQ 1082
G + N L+ +S +M+ K LP+
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 81 (33.6 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 690 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 749
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 750 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 806
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 807 -AKFDVVITTYSIV 819
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
Score = 43 (20.2 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 1069 LLRSSVEMAKKLPQERQMYL 1088
L R VE+ + LP +R++Y+
Sbjct: 538 LRRLKVEVEQSLPPKREIYI 557
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 234 (87.4 bits), Expect = 9.2e-29, Sum P(5) = 9.2e-29
Identities = 50/142 (35%), Positives = 81/142 (57%)
Query: 1263 KAIVFSQWTKMLDLLEASL---KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L + S+ Y RLDG++ R V FN P + V++++
Sbjct: 1640 RILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLT 1699
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1700 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1759
Query: 1380 ALQQKKREMVASAFGEDETGGQ 1401
LQ+ K + + ++ Q
Sbjct: 1760 GLQKFKMNIANTVISQENASLQ 1781
Score = 118 (46.6 bits), Expect = 9.2e-29, Sum P(5) = 9.2e-29
Identities = 39/117 (33%), Positives = 61/117 (52%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1395 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1454
Query: 954 CSMIKVPI--SKNPVKGYKKLQAV---LKTIMLRRTKGTLLDG--EPII-NLPPKVI 1002
+ PI S++ ++ +AV + R+ LL E ++ +LPPK+I
Sbjct: 1455 AARYGKPILASRDARSSSREQEAVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKII 1511
Score = 91 (37.1 bits), Expect = 9.2e-29, Sum P(5) = 9.2e-29
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1215 GIPDPPNMSEELIQMKAK-ERHFLEQLLDGKKLENYKIPVP---IKAELRKYQQDGVNWL 1270
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 1271 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1298
Score = 78 (32.5 bits), Expect = 9.2e-29, Sum P(5) = 9.2e-29
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1322 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERARLQYQVKRHNLIVASYDVVR 1380
Query: 821 MEV 823
++
Sbjct: 1381 NDI 1383
Score = 58 (25.5 bits), Expect = 3.8e-15, Sum P(3) = 3.8e-15
Identities = 27/96 (28%), Positives = 41/96 (42%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD---DEP--DICILEDISQPARS 561
+KED+ ++ + + + LSP +Q KS DE I + E+ +P
Sbjct: 1498 MKEDVLQDLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSISLREETEKPKLK 1557
Query: 562 NQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
V + L R C NH AL V+T+QH Y
Sbjct: 1558 ATGHVF-QALQYLRKLC-NHP-AL---VLTTQHPEY 1587
Score = 53 (23.7 bits), Expect = 9.2e-29, Sum P(5) = 9.2e-29
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 405 EAVGRNSSYHDGCNSFPFKDSGQ--SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFC 462
+AV N +D + P + + + + P+ S+ V +A EE + LES FC
Sbjct: 225 DAVEANEKSNDSTDGEPEEKRRKVANVVINQPATDSKTLVENASEEANEWPLES----FC 280
Query: 463 QEICD 467
+E+C+
Sbjct: 281 EEVCN 285
Score = 51 (23.0 bits), Expect = 5.3e-22, Sum P(5) = 5.3e-22
Identities = 34/137 (24%), Positives = 58/137 (42%)
Query: 980 MLRRTKGTLLDGEPIINLPPKVI-----MLK--QVDFTDEERDFYSQLEIN---SRDQFK 1029
+LRR K +L +LPPK+I +L QV ++ ++ +I+ S +
Sbjct: 1494 LLRRMKEDVLQ-----DLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSISLR 1548
Query: 1030 EYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMY-- 1087
E +K ++ L LR+ C+HP LV R + ++A R +
Sbjct: 1549 EETEKPKLKATG-HVFQALQYLRKLCNHPALVLTTQHPEYKRITEQLAAHNSSLRDIQHA 1607
Query: 1088 -LLNCLEASLAICGICN 1103
L+ L+ L CG+ N
Sbjct: 1608 PKLSALKQLLLDCGLGN 1624
Score = 39 (18.8 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 657 ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLD 716
++S + E L +G + Q L K + AL+L + P ++ + QL N
Sbjct: 1544 SISLREETEKPKLKATGHVFQALQYLRKLCNHPALVLTTQHPEYKRITE---QLAAHNSS 1600
Query: 717 EEDNGIQ-VNGLDLVKQESDYCRVVPNGSSAKS 748
D IQ L +KQ C + NG S++S
Sbjct: 1601 LRD--IQHAPKLSALKQLLLDCGL-GNGGSSES 1630
Score = 37 (18.1 bits), Expect = 2.6e-23, Sum P(5) = 2.6e-23
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 685 TISTIALILKERPPSFRTEDDNKRQ---LETLN--LDEEDNGI 722
T+ T+ + L++ P DDN +Q +E L +++ D GI
Sbjct: 1131 TMETMNIFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVGI 1173
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 213 (80.0 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 57/186 (30%), Positives = 97/186 (52%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 586 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 645
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 646 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 697
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 698 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLISG 752
Query: 1064 FDSNSL 1069
+ L
Sbjct: 753 AEEKIL 758
Score = 194 (73.4 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 797 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 855
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 856 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 915
Query: 1378 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1410
+ K + ++ + T G Q +++ V+DL
Sbjct: 916 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 954
Score = 71 (30.1 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 490 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 545
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 546 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 585
Score = 65 (27.9 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 460 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 499
Score = 41 (19.5 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 43 DRVKSSPGDLSLRNLSQDELVQDVGSH 69
D SP D S Q+E ++DV SH
Sbjct: 31 DYTSPSPFDHST---DQEEKIEDVASH 54
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 252 (93.8 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 60/186 (32%), Positives = 100/186 (53%)
Query: 1230 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYR 1289
N + G++L + + + + + ++ GG + ++FSQ TKMLDLLE L+ +Y
Sbjct: 943 NGSYDGNSL--VKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYE 1000
Query: 1290 RLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1348
R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP +
Sbjct: 1001 RIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDI 1060
Query: 1349 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF----GEDETGGQQTR 1404
QA RAHRIGQ + V + R + +VE+RI Q KR+M+ + G G T+
Sbjct: 1061 QAFSRAHRIGQNKKVMIYRFVTRASVEERIT--QVAKRKMMLTHLVVRPGLGSKSGSMTK 1118
Query: 1405 LTVDDL 1410
+DD+
Sbjct: 1119 QELDDI 1124
Score = 172 (65.6 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 58/209 (27%), Positives = 104/209 (49%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 760 LITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 819
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 820 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 871
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 872 MPAKTELIVRVELSQMQKKYYKF--ILTRN-FEALNSKGG--GNQVSLLNIMMDLKKCCN 926
Query: 1057 HP-----------LLVKG-FDSNSLLRSS 1073
HP +L G +D NSL++SS
Sbjct: 927 HPYLFPVAAVEAPVLPNGSYDGNSLVKSS 955
Score = 60 (26.2 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKT+ TI +
Sbjct: 653 ILADEMGLGKTVQTIVFL 670
Score = 47 (21.6 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 475 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQ 533
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 806 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADISKEDQIKKLHDLLGPHMLR 862
Query: 534 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 585
+D ++ + ++ + ++SQ + +L + S + V+L
Sbjct: 863 RLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 914
Score = 46 (21.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 932 IDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK-NPVKGYKKLQAVL 976
+DD+ F Y YK+F ++ I+K NP K+ VL
Sbjct: 73 LDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVL 118
Score = 41 (19.5 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 799 RTKDPCELAKFDVVITTYSIVSME 822
R K ++ KF V++T+Y +++++
Sbjct: 742 RMKKEAQI-KFHVLLTSYELITID 764
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 226 (84.6 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 49/126 (38%), Positives = 75/126 (59%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM-S 1319
G + ++FSQ T+MLD+LE + Y RLDG R++ +++FN + M S
Sbjct: 447 GSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLS 506
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
+A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V V RL ++TVE++I+
Sbjct: 507 TRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIV 566
Query: 1380 ALQQKK 1385
+ K
Sbjct: 567 ERAEVK 572
Score = 166 (63.5 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 887 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
K W +V+DEA IKN +++++ + R ++GTP+QN + +L++ FL D
Sbjct: 247 KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDV 306
Query: 947 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 1006
F + F +L AVLK +LRR K + E L PK M
Sbjct: 307 FNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEV---EK--RLKPKKEMKIF 361
Query: 1007 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
V + +RD+Y+++ + D AG V++ + +LM +LR+ +HP L G
Sbjct: 362 VGLSKMQRDWYTKVLLKDIDVVN---GAGKVEKMRLQNILM--QLRKCTNHPYLFDG 413
Score = 81 (33.6 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+WM+ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 131 YQIRGLNWMISLYENGIN---GILADEMGLGKTLQTISLL 167
Score = 60 (26.2 bits), Expect = 1.7e-26, Sum P(4) = 1.7e-26
Identities = 29/150 (19%), Positives = 67/150 (44%)
Query: 678 DDQGLGKTISTIALILKERPPSF-RTEDDNKRQLETLN--LDEEDNGIQVNGLDLVKQES 734
D++ L + +T + + P++ ++ + Q+ LN + +NGI NG+ + E
Sbjct: 100 DEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGI--NGI--LADEM 155
Query: 735 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 794
+ + + +++ K + A +V+ P S L+ W E + S ++ ++
Sbjct: 156 GLGKTL---QTISLLGYLKHFKNQ-AGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGD 211
Query: 795 HGSSRT--KDPCELAKFDVVITTYSIVSME 822
+ T +D ++DV +T+Y + E
Sbjct: 212 QDTRNTFIRDVLMPGEWDVCVTSYEMCIRE 241
Score = 43 (20.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 107 SASFSDWFNQNSGTCCPESVGISQ 130
S F +WFN N TC + I++
Sbjct: 310 SEDFDEWFNTN--TCLGDDALITR 331
Score = 41 (19.5 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 281 LSSEETATKPKDEEG--EFTTEIACSSSG 307
+S +TA EE E T++ A SSSG
Sbjct: 1 MSKTDTAAVEATEENSNETTSDAATSSSG 29
Score = 40 (19.1 bits), Expect = 1.4e-09, Sum P(4) = 1.4e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1229 SNDLHGGDTLDNISDENE 1246
+N+ +G D +DNI+ + E
Sbjct: 811 ANEKYGRDDIDNIAKDVE 828
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 212 (79.7 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 1064 FDSNSL 1069
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1378 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1410
+ K + + + + GG QQ +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 41 (19.5 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 43 DRVKSSPGDLSLRNLSQDELVQDVGSH 69
D SP D S Q+E ++DV SH
Sbjct: 31 DYKSPSPFDCST---DQEEKIEDVASH 54
Score = 37 (18.1 bits), Expect = 5.7e-13, Sum P(5) = 5.7e-13
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1159 SQRQPGQEIPTDYSDSKLVEAPSCE 1183
SQ++ ++ D +S APSCE
Sbjct: 2652 SQKRKKKKTKGDNPNSHPEPAPSCE 2676
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 226 (84.6 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 1226 PGDSNDLHGGDT--LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1283
P + N+ G L I + I + ++ G + ++FSQ +MLD+L L
Sbjct: 772 PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 831
Query: 1284 SSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1342
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D W
Sbjct: 832 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 891
Query: 1343 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
NP + QA RAHRIGQ + V++ RL K TVE+ I+ ++ K++MV
Sbjct: 892 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII--ERAKKKMV 936
Score = 168 (64.2 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 49/183 (26%), Positives = 94/183 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 608 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 667
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F ++ F + K GY+ L VL+ +LRR K D E +LP KV +
Sbjct: 668 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 718
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ + ++ +Y I +R+ +K A GT + + L +++ L++ C+H L+K
Sbjct: 719 LRVEMSALQKQYYKW--ILTRN-YKALAK-GT-RGSTSGFLNIVMELKKCCNHCYLIKPP 773
Query: 1065 DSN 1067
+ N
Sbjct: 774 EEN 776
Score = 70 (29.7 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 38/136 (27%), Positives = 53/136 (38%)
Query: 557 QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKS 616
+PA SN+ L K + + S CS AL S S+ +P +K
Sbjct: 406 KPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQ 465
Query: 617 KASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGIL 676
+ L Q A G N E L +Q L+W+ S + IL
Sbjct: 466 RPRFVALKKQPAYLG--GENLE-----------LRDYQLEGLNWLAHSWCKS---NSVIL 509
Query: 677 ADDQGLGKTISTIALI 692
AD+ GLGKTI TI+ +
Sbjct: 510 ADEMGLGKTIQTISFL 525
Score = 51 (23.0 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 813
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 539 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 814 TTYSIV 819
TTY I+
Sbjct: 596 TTYEIL 601
Score = 50 (22.7 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 46 KSSPGDLSLR-NLSQDELVQDV-GSHSNLQLQSEISGAESG-GLG-DSSSQLEPTEQK 99
KS D SL N S ++ GS S Q +SE G++ G G G +S+S E +E +
Sbjct: 6 KSQEEDSSLHSNASSHSASEEASGSDSGSQSESE-QGSDPGSGHGSESNSSSESSESQ 62
Score = 49 (22.3 bits), Expect = 1.5e-28, Sum P(7) = 1.5e-28
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 54 LRNLSQDELVQDVGSHSNLQLQS---EISGAESGGLGDSSSQLEP 95
+RN + + +D HSN S E SG++SG +S +P
Sbjct: 1 MRNKDKSQ-EEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDP 44
Score = 39 (18.8 bits), Expect = 7.4e-12, Sum P(5) = 7.4e-12
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 891 FRVVLDEAQSIKNHRTQVARACWGLRAKRRW 921
F+ +D S N +T R C L+ + R+
Sbjct: 439 FQSCIDSFHSRNNSKTIPTRECKALKQRPRF 469
Score = 38 (18.4 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQ 533
+L ++++ G+K+ + K + L K+SPE ++
Sbjct: 325 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVE 360
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(7) = 1.2e-28
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 271 DPSSFNFQHLLSSEETATKPK 291
+PS FN + SS + PK
Sbjct: 117 EPSRFNIKEEASSGSESGSPK 137
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 221 (82.9 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PE 1312
+ ++ K ++F Q T ++ ++E +Y RLDGT R +K FN E
Sbjct: 341 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSE 400
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ ++S +A LGLN+ +A V++ D WNP + QA DRAHRIGQ V VLRL N
Sbjct: 401 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 460
Query: 1373 TVEDRILALQQKK 1385
+VE++ILA + K
Sbjct: 461 SVEEKILAAAKYK 473
Score = 137 (53.3 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 179
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGTLLDG 991
L F +F P + K ++L VL+ +LRR K
Sbjct: 180 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKK----- 234
Query: 992 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINS---RD-QFKEYAAAGTVKQNYVNILLM 1047
E LP KV + + D + +R Y ++ D K+ G K ++
Sbjct: 235 EVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK----TLMNT 290
Query: 1048 LLRLRQACDHPLLVKGFDSN 1067
+++LR+ C+HP + + + +
Sbjct: 291 IMQLRKICNHPYMFQHIEES 310
Score = 92 (37.4 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 45
Score = 60 (26.2 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 819
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 115
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 209 (78.6 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1143 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1201
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1202 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1261
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1262 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1307
Score = 201 (75.8 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 56/199 (28%), Positives = 96/199 (48%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 997 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1048
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+
Sbjct: 1049 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINAG 1104
Query: 1065 DSNSLLRSSVEMAKKLPQE 1083
+L E +P +
Sbjct: 1105 AEEKILTEFREACHIIPHD 1123
Score = 68 (29.0 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 850
Score = 67 (28.6 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 804 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 860
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 861 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 916
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 917 AYKFDALITTFEMILSDCPE 936
Score = 54 (24.1 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGG-LGDSS-SQLEPTEQKCSPLQ 104
D S ++QD + + +G S+L +++ GG +G+SS S L P + +P +
Sbjct: 22 DDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGNSSASDLVPPPDETAPTE 77
Score = 49 (22.3 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 481 PRVLNEDELPSVRPEEEGEKKRRKKSS 507
Score = 42 (19.8 bits), Expect = 2.4e-27, Sum P(5) = 2.4e-27
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 433
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVGNS 61
Score = 41 (19.5 bits), Expect = 9.0e-12, Sum P(5) = 9.0e-12
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1338 LDLWWNPTTEDQAIDRA---HRIGQT 1360
L WW P D + R H + QT
Sbjct: 1923 LPKWWEPVRHDGELLRGAARHGVSQT 1948
Score = 41 (19.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQATVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 268
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(5) = 1.1e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1130 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE--IPTDYSDSKLVEAPS 1181
DD+ K+ S SS S ++ ++S + + +E + D S SKL + S
Sbjct: 2070 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEES 2123
Score = 37 (18.1 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 528 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 559
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 209 (78.6 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 759 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 817
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 818 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 877
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 878 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 923
Score = 203 (76.5 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 554 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 613
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 614 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 665
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 666 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 721
Query: 1065 DSNSL 1069
+ L
Sbjct: 722 EEKIL 726
Score = 68 (29.0 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 428 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 467
Score = 67 (28.6 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 421 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 477
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 478 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 533
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 534 AYKFDALITTFEMILSDCPE 553
Score = 49 (22.3 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 98 PRVLNEDELPSVRPEEEGEKKRRKKSS 124
Score = 41 (19.5 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1338 LDLWWNPTTEDQAIDRA---HRIGQT 1360
L WW P D + R H + QT
Sbjct: 1537 LPKWWEPVRHDGELLRGAARHGVSQT 1562
Score = 40 (19.1 bits), Expect = 2.1e-11, Sum P(4) = 2.1e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1130 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE--IPTDYSDSKLVEAPS 1181
DD+ K+ S SS S ++ ++S + + +E + D S SKL + S
Sbjct: 1684 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEES 1737
Score = 37 (18.1 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 145 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 176
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 205 (77.2 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1299 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1357
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1358 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1417
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1418 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1463
Score = 202 (76.2 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1094 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1153
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1154 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1205
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1206 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1261 AEEKIL 1266
Score = 74 (31.1 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 798
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 998 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1053
Query: 799 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 825
RT KDP KF +ITT+ ++ + P+
Sbjct: 1054 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1093
Score = 64 (27.6 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1007
Score = 39 (18.8 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 499 LNKKELDGVKEDMEAEIKTRSMA 521
LN+ LDG +E E + K RS A
Sbjct: 629 LNRNSLDGSQE--EKKKKKRSKA 649
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 243 (90.6 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 1230 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYR 1289
N + G +L + + + + + ++ G + ++FSQ TKMLDLLE L+ +Y
Sbjct: 394 NGSYDGSSL--VKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYE 451
Query: 1290 RLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1348
R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP +
Sbjct: 452 RIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDI 511
Query: 1349 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF----GEDETGGQQTR 1404
QA RAHRIGQ + V + R + +VE+RI Q KR+M+ + G G T+
Sbjct: 512 QAFSRAHRIGQNKKVMIYRFVTRASVEERIT--QVAKRKMMLTHLVVRPGLGSKSGSMTK 569
Query: 1405 LTVDDL 1410
+DD+
Sbjct: 570 QELDDI 575
Score = 169 (64.5 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 51/184 (27%), Positives = 93/184 (50%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 211 LITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 270
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 271 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 322
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 323 MPAKTELIVRVELSQMQKKYYKF--ILTRN-FEALNSKGG--GNQVSLLNIMMDLKKCCN 377
Query: 1057 HPLL 1060
HP L
Sbjct: 378 HPYL 381
Score = 60 (26.2 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKT+ TI +
Sbjct: 105 ILADEMGLGKTVQTIVFL 122
Score = 47 (21.6 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 475 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQ 533
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 257 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADISKEDQIKKLHDLLGPHMLR 313
Query: 534 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 585
+D ++ + ++ + ++SQ + +L + S + V+L
Sbjct: 314 RLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 365
Score = 40 (19.1 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 799 RTKDPCELAKFDVVITTYSIVSME 822
R K ++ KF V++T+Y +++++
Sbjct: 193 RMKKEVQI-KFHVLLTSYELITID 215
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 267 (99.0 bits), Expect = 1.8e-28, Sum P(5) = 1.8e-28
Identities = 64/189 (33%), Positives = 101/189 (53%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L S + + K + +K GG + ++FSQ TKMLDLLE L++
Sbjct: 1043 PKMPNGMYDGSALTKASGKL-MLLFKM-LKKLKEGGHRVLIFSQMTKMLDLLEDFLENEG 1100
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNT--LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1343
+Y R+DG ++ R +A+ FN P+ V ++S +A LG+N+ A V++ D WN
Sbjct: 1101 YKYERIDGGVTGGMRQEAIDRFNAPGAPQF-VFLLSTRAGGLGINLATADTVIIYDSDWN 1159
Query: 1344 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQ 1401
P + QA RAHRIGQ + V + R K +VE+RI + +KK + G G
Sbjct: 1160 PHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKAGS 1219
Query: 1402 QTRLTVDDL 1410
++ +DD+
Sbjct: 1220 MSKQELDDI 1228
Score = 161 (61.7 bits), Expect = 1.8e-28, Sum P(5) = 1.8e-28
Identities = 49/184 (26%), Positives = 92/184 (50%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 864 LITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELF 923
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + +
Sbjct: 924 HLLNFLTPERFNNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----H 975
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ G N V++L +++ L++ C+
Sbjct: 976 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNTRGG--GNQVSLLNVVMDLKKCCN 1030
Query: 1057 HPLL 1060
HP L
Sbjct: 1031 HPYL 1034
Score = 55 (24.4 bits), Expect = 1.8e-28, Sum P(5) = 1.8e-28
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKT+ T +
Sbjct: 758 ILADEMGLGKTVQTAVFL 775
Score = 46 (21.3 bits), Expect = 1.8e-28, Sum P(5) = 1.8e-28
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 37 EEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPT 96
E E++ DRV S + S S+ + + S S+ + +G ++GG G S + EP
Sbjct: 70 EGEEEEDRVMRSESEGSDYAPSKKKKKR---SSSSKDRKKGSAGEKAGGSGGKSKRKEPE 126
Query: 97 EQK 99
++
Sbjct: 127 PEE 129
Score = 45 (20.9 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 20/112 (17%), Positives = 41/112 (36%)
Query: 475 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLK-LSPESIQ 533
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 910 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADIAKEDQIKKLHDMLGPHMLR 966
Query: 534 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 585
+D H+ + ++ + ++S + +L + + + V+L
Sbjct: 967 RLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSL 1018
Score = 42 (19.8 bits), Expect = 1.8e-28, Sum P(5) = 1.8e-28
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 796 GSSRTKDPCELA-KFDVVITTYSIVSME 822
G +K E A KF V++T+Y +++++
Sbjct: 841 GKKASKMKKEAAVKFHVLLTSYELITID 868
Score = 42 (19.8 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1004 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLL 1049
+K +D+T + D+ S + QF A + V+ ++M+L
Sbjct: 153 MKDIDYTFTQEDYNSLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVL 198
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 205 (77.2 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1300 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 1358
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1359 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1418
Query: 1372 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1410
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1419 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1464
Score = 201 (75.8 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1095 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1154
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1155 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1206
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1207 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1261
Query: 1064 FDSNSL 1069
+ L
Sbjct: 1262 AEEKIL 1267
Score = 76 (31.8 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 695 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 750
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 947 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 1006
Query: 751 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 800
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 1007 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 1062
Query: 801 --KDPCELA-----KFDVVITTYSIVSMEVPK 825
KDP KF +ITT+ ++ + P+
Sbjct: 1063 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1094
Score = 66 (28.3 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 969 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1008
Score = 38 (18.4 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 1228 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1259
+ D+ DT + E E + KC + I++
Sbjct: 2194 EETDIADKDTKQDCDAEAETGSVKCELKDIEM 2225
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 1063 GFDSNSLLRSSVEMAKK 1079
G DS +L R+SV+ +++
Sbjct: 628 GLDSQNLSRNSVDCSQE 644
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 212 (79.7 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 1064 FDSNSL 1069
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1378 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1410
+ K + ++ + T G Q +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 39 (18.8 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 48 SPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAE 82
SP + Q+E ++DV SH L Q ++ AE
Sbjct: 34 SPSPFE-HSTDQEEKIEDVASHC-LS-QKDLYAAE 65
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 212 (79.7 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 1005 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 1064 FDSNSL 1069
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1317
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1377
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1378 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1410
+ K + ++ + T G Q +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 743 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 799
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 800 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 825
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 39 (18.8 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 48 SPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAE 82
SP + Q+E ++DV SH L Q ++ AE
Sbjct: 34 SPSPFE-HSTDQEEKIEDVASHC-LS-QKDLYAAE 65
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 250 (93.1 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 60/172 (34%), Positives = 95/172 (55%)
Query: 1248 IAAKCSIDSIK--LGGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDK 1302
IAA + ++I + ++F+Q MLD++E L S+ Y R+DG++ R
Sbjct: 1764 IAAATANETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHS 1823
Query: 1303 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362
V FN+ P + V++++ LGLN+ A V+ L+ WNP + QA+DRAHRIGQ +
Sbjct: 1824 IVNQFNSDPTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKV 1883
Query: 1363 VSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
V+V RL T+E++I+ LQ+ K + + D + QT T + LN LF
Sbjct: 1884 VNVYRLITSGTLEEKIMGLQKFKLNIANTVINHDNSS-LQTMSTNELLN-LF 1933
Score = 146 (56.5 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 49/144 (34%), Positives = 70/144 (48%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++ +A L++ R LSGTPIQN + +L+S F FL K F
Sbjct: 1513 ILDEGHIIKNAKTKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLF 1572
Query: 954 CSMIKVPI--SKNPVKGYKKLQA-VLKTIMLRRTKGTLL----DGEPIINLPPKVIMLKQ 1006
+ PI SK+P K +A VL L R L + + +LPPK+I +
Sbjct: 1573 NELYSKPILASKDPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDVLADLPPKIIQDRY 1632
Query: 1007 VDFTDEERDFYSQLEINSRDQFKE 1030
+ + + Y SR QFKE
Sbjct: 1633 CNLSPLQIRLYDYF---SRTQFKE 1653
Score = 86 (35.3 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 605 GVP-LTGLG-GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMV 662
GVP GL + + +ER L+ + G N + L ++Q+ ++W+
Sbjct: 1333 GVPDPEGLDQDLIQQKQEERKFLEQLLDGSKVENYPLPIR---INTELRKYQQDGVNWLA 1389
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ TI +I
Sbjct: 1390 FLNKYKLH---GILCDDMGLGKTLQTICII 1416
Score = 85 (35.0 bits), Expect = 2.6e-28, Sum P(5) = 2.6e-28
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 683 GKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 742
G + L ++ + + D L LN + +GI + + L K C ++
Sbjct: 1361 GSKVENYPLPIRINTELRKYQQDGVNWLAFLN-KYKLHGILCDDMGLGKTLQTIC-IIAG 1418
Query: 743 GSSAKSFNFVEQAKGRPAAG---TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--S 797
+ N+ Q KG P +LV+CP S++ W E++ K S ++ + Y G S
Sbjct: 1419 DDYHRRVNY--QEKGTPDFAPLPSLVICPPSLVGHWFYEIK-KFCSDSTMKPMTYMGNPS 1475
Query: 798 SRTKDPCELAKFDVVITTYSIVSMEV 823
R + +V+I +Y I+ ++
Sbjct: 1476 ERQAQRSKFKDHNVLIMSYDIMRNDI 1501
Score = 52 (23.4 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 14 SAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPG--DLSLRNLSQDELVQD---VGS 68
S EF D++ L +MD +L+++K ++K G DL ++ S D LV+D V +
Sbjct: 163 SGGKEF-DEEELDPNMDPKELLLKQKK---KLKKQLGLDDLPIKLESMDSLVEDKDIVLN 218
Query: 69 HSNLQLQSEISGAESGGLGDSSSQLEPT 96
+S ++++ E D S L+ T
Sbjct: 219 NSKSAIKAKKEKEEKEKKEDISMVLDTT 246
Score = 44 (20.5 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 669 LHCSGGILADDQGLGKTISTIALILKERPPSFRTE--DDNKRQLETLNLDEEDNGIQVN 725
L SGG D++ L + L+LK++ + DD +LE+++ ED I +N
Sbjct: 160 LVASGGKEFDEEELDPNMDPKELLLKQKKKLKKQLGLDDLPIKLESMDSLVEDKDIVLN 218
Score = 42 (19.8 bits), Expect = 5.7e-18, Sum P(5) = 5.7e-18
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 962 SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEE-R--D 1015
+K+ G ++A+ + ++ LRR K +L +LPPK+I + + + + R D
Sbjct: 1590 TKDQEAGVLAMEALHRQVLPFLLRRLKEDVL-----ADLPPKIIQDRYCNLSPLQIRLYD 1644
Query: 1016 FYSQLEINS------RDQFKEYAAAGTVKQNY-------VNILLMLLRLRQACDHPLLV 1061
++S+ + D+ ++ G K+ +I L LR+ C HP V
Sbjct: 1645 YFSRTQFKETIKNEVEDENEDADEGGESKKKKGGNGGGATHIFQALQYLRKLCGHPSFV 1703
Score = 38 (18.4 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 314 GGPGKGSMLKVPAIDYLDAK 333
GG GK + +DY++AK
Sbjct: 369 GGGGKTIDTPIDKMDYVNAK 388
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 257 (95.5 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 1057 HPLL 1060
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 41 (19.5 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1667 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1725
Query: 1291 LD 1292
D
Sbjct: 1726 HD 1727
Score = 37 (18.1 bits), Expect = 2.2e-28, Sum P(5) = 2.2e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 257 (95.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 1057 HPLL 1060
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(5) = 3.0e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1291 LD 1292
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 257 (95.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 1057 HPLL 1060
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(5) = 3.0e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1291 LD 1292
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 257 (95.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 1057 HPLL 1060
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(5) = 3.0e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1291 LD 1292
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 257 (95.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 1057 HPLL 1060
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(5) = 3.0e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 43 (20.2 bits), Expect = 7.2e-07, Sum P(5) = 7.2e-07
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T ++SDE +K +K + +I GG + S W + K I +RR
Sbjct: 1677 LQNGETPKDLSDEKQKKNSKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1735
Query: 1291 LD 1292
D
Sbjct: 1736 HD 1737
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 38 (18.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 1152 ATLNNSLSQRQPGQEIPTDYSDSKLVEAP 1180
A LNNSL P E D D E P
Sbjct: 22 ALLNNSLPPPHPENEEDPD-EDLSEAETP 49
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 257 (95.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 1057 HPLL 1060
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(5) = 3.0e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 41 (19.5 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T ++SDE +K K + +I GG + S W + K I +RR
Sbjct: 1677 LQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1735
Query: 1291 LD 1292
D
Sbjct: 1736 HD 1737
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 236 (88.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K + + ++ + Q + D L LF
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1798
Score = 131 (51.2 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 954 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1462 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1516
Query: 1002 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYV--------NILLMLLRLR 1052
I + + Y + ++ E ++ T+ + ++ L LR
Sbjct: 1517 IQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLR 1576
Query: 1053 QACDHPLLV 1061
+ C+HP LV
Sbjct: 1577 KLCNHPALV 1585
Score = 91 (37.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 73 (30.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 821 MEV 823
++
Sbjct: 1388 NDI 1390
Score = 51 (23.0 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 562
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1504 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLK 1563
Query: 563 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
+ + + L R C NH AL V+T QH +
Sbjct: 1564 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1593
Score = 49 (22.3 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
+ E L +G + Q L K + AL+L + P F+T + K ++ +L + +
Sbjct: 1556 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAE-KLAVQNSSLHDIQHAP 1614
Query: 723 QVNGLDLVKQESDYCRVVPNGSSAKS 748
+++ L KQ C + NGS+++S
Sbjct: 1615 KLSAL---KQLLLDCGL-GNGSTSES 1636
Score = 40 (19.1 bits), Expect = 6.8e-28, Sum P(6) = 6.8e-28
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 447 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 496
++ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 39 (18.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 500 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 557
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSSLIEETNEW 281
Query: 558 PARS 561
P S
Sbjct: 282 PLES 285
Score = 39 (18.8 bits), Expect = 6.8e-28, Sum P(6) = 6.8e-28
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 261 YINTGDTIFGDPSSFNF 277
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 37 (18.1 bits), Expect = 3.7e-28, Sum P(5) = 3.7e-28
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 447 EEHEDLILESKRARFCQEICD 467
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
Score = 37 (18.1 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSLSS 1147
+ QCI + L + P N KI +L S
Sbjct: 896 YAAQCIAKLLQQCTTRTPCPNSKIIKNLCS 925
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(4) = 4.7e-11
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 1030 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 1085
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQ 1087
Query: 1086 MY 1087
++
Sbjct: 1088 VF 1089
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 236 (88.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1647 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1706
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1707 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1766
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K + + ++ + Q + D L LF
Sbjct: 1767 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1799
Score = 128 (50.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 56/190 (29%), Positives = 83/190 (43%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1403 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1462
Query: 954 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1463 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1517
Query: 1002 IMLKQVDFTDEERDFYSQLEINSR-----DQFKEYAAAG--TVKQNYV---NILLMLLRL 1051
I + + Y SR D+ AA T K ++ L L
Sbjct: 1518 IQDYYCTLSPLQVQLYEDFA-KSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYL 1576
Query: 1052 RQACDHPLLV 1061
R+ C+HP LV
Sbjct: 1577 RKLCNHPALV 1586
Score = 93 (37.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N E P + L ++Q+ ++W+
Sbjct: 1223 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYEIPVP---INAELRKYQQDGVNWL 1278
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 1279 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1306
Score = 74 (31.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1330 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERVRLQHQVKRHNLIVASYDVVR 1388
Query: 821 MEV 823
++
Sbjct: 1389 NDI 1391
Score = 51 (23.0 bits), Expect = 7.7e-13, Sum P(4) = 7.7e-13
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 562
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1505 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK 1564
Query: 563 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
+ + + L R C NH AL V+T QH +
Sbjct: 1565 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1594
Score = 46 (21.3 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
+ E L +G + Q L K + AL+L + P F++ + K ++ +L + +
Sbjct: 1557 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTE-KLAVQNSSLHDIQHAP 1615
Query: 723 QVNGLDLVKQESDYCRVVPNGSSAKS 748
+++ L KQ C + NGS+++S
Sbjct: 1616 KLSAL---KQLLLDCGL-GNGSTSES 1637
Score = 44 (20.5 bits), Expect = 2.7e-28, Sum P(6) = 2.7e-28
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 447 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS 497
++ E+ ++++ A+ ++ ++R+P + NL S PY PS
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTPS 936
Score = 39 (18.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 500 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 557
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSPLIEETNEW 281
Query: 558 PARS 561
P S
Sbjct: 282 PLES 285
Score = 39 (18.8 bits), Expect = 2.7e-28, Sum P(6) = 2.7e-28
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 261 YINTGDTIFGDPSSFNF 277
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 37 (18.1 bits), Expect = 3.7e-28, Sum P(5) = 3.7e-28
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 447 EEHEDLILESKRARFCQEICD 467
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
Score = 37 (18.1 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSL-SSVFSKATLNNSLS---QRQPGQE 1166
+ QCI + L + P N KI +L SS+ L S++ Q GQE
Sbjct: 896 YAAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTPSVTCPVPTQSGQE 948
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 1030 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 1085
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLEKGDGPAQELVNSLQ 1087
Query: 1086 MY 1087
++
Sbjct: 1088 VF 1089
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 257 (95.5 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1053 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1110
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1111 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1170
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1171 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1230
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1231 SKQELDDI 1238
Score = 176 (67.0 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 874 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 933
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 934 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 985
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 986 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1040
Query: 1057 HPLL 1060
HP L
Sbjct: 1041 HPYL 1044
Score = 56 (24.8 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 749 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 785
Score = 45 (20.9 bits), Expect = 3.1e-27, Sum P(5) = 3.1e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 697 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 756
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 757 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 813
Score = 44 (20.5 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 854 ASRMKKEASV-KFHVLLTSYELITIDM 879
Score = 41 (19.5 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 1017 LNARGGGNQVSLLNV----VMDLKKCC 1039
Score = 38 (18.4 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1045 FPVAAMEAPKMPNG 1058
Score = 38 (18.4 bits), Expect = 2.2e-06, Sum P(5) = 2.2e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1694 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1752
Query: 1291 LD 1292
D
Sbjct: 1753 HD 1754
Score = 37 (18.1 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 543 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 571
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 257 (95.5 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1055 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1112
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1113 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1172
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1173 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1232
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1233 SKQELDDI 1240
Score = 176 (67.0 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 876 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 935
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 936 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 987
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 988 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1042
Query: 1057 HPLL 1060
HP L
Sbjct: 1043 HPYL 1046
Score = 56 (24.8 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 751 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 787
Score = 45 (20.9 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 699 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 758
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 759 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 815
Score = 44 (20.5 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 856 ASRMKKEASV-KFHVLLTSYELITIDM 881
Score = 41 (19.5 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 1019 LNARGGGNQVSLLNV----VMDLKKCC 1041
Score = 38 (18.4 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1047 FPVAAMEAPKMPNG 1060
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1696 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1754
Query: 1291 LD 1292
D
Sbjct: 1755 HD 1756
Score = 37 (18.1 bits), Expect = 2.4e-28, Sum P(5) = 2.4e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 545 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 573
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 221 (82.9 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PE 1312
+ ++ K ++F Q T ++ ++E +Y RLDGT R +K FN E
Sbjct: 422 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSE 481
Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
+ ++S +A LGLN+ +A V++ D WNP + QA DRAHRIGQ V VLRL N
Sbjct: 482 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 541
Query: 1373 TVEDRILALQQKK 1385
+VE++ILA + K
Sbjct: 542 SVEEKILAAAKYK 554
Score = 137 (53.3 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 885 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 203 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 260
Query: 942 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGTLLDG 991
L F +F P + K ++L VL+ +LRR K
Sbjct: 261 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKK----- 315
Query: 992 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINS---RD-QFKEYAAAGTVKQNYVNILLM 1047
E LP KV + + D + +R Y ++ D K+ G K ++
Sbjct: 316 EVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK----TLMNT 371
Query: 1048 LLRLRQACDHPLLVKGFDSN 1067
+++LR+ C+HP + + + +
Sbjct: 372 IMQLRKICNHPYMFQHIEES 391
Score = 92 (37.4 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 126
Score = 60 (26.2 bits), Expect = 2.5e-28, Sum P(4) = 2.5e-28
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 819
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 196
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 257 (95.5 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 1226 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1285
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1054 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1111
Query: 1286 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1112 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1171
Query: 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1402
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1172 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1231
Query: 1403 TRLTVDDL 1410
++ +DD+
Sbjct: 1232 SKQELDDI 1239
Score = 176 (67.0 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 875 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 934
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 935 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 986
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 987 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1041
Query: 1057 HPLL 1060
HP L
Sbjct: 1042 HPYL 1045
Score = 56 (24.8 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 750 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 786
Score = 45 (20.9 bits), Expect = 3.3e-27, Sum P(5) = 3.3e-27
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 675 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 729
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 698 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 757
Query: 730 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 778
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 758 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 814
Score = 44 (20.5 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 797 SSRTKDPCELAKFDVVITTYSIVSMEV 823
+SR K + KF V++T+Y ++++++
Sbjct: 855 ASRMKKEASV-KFHVLLTSYELITIDM 880
Score = 41 (19.5 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 310 LNAQGGPGKGSMLKVPAIDYLDAKRQC 336
LNA+GG + S+L V +D K+ C
Sbjct: 1018 LNARGGGNQVSLLNV----VMDLKKCC 1040
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 1232 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1290
L G+T ++SDE +K K + +I GG + S W + K I +RR
Sbjct: 1711 LQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1769
Query: 1291 LD 1292
D
Sbjct: 1770 HD 1771
Score = 38 (18.4 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 816 YSIVSMEVPKQPLG 829
+ + +ME PK P G
Sbjct: 1046 FPVAAMEAPKMPNG 1059
Score = 37 (18.1 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 521
P A P+T + K L+G + + + +K + M+
Sbjct: 544 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 572
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 209 (78.6 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1143 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1201
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1202 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1261
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1262 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1307
Score = 201 (75.8 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 56/199 (28%), Positives = 96/199 (48%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 997 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1048
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+
Sbjct: 1049 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINAG 1104
Query: 1065 DSNSLLRSSVEMAKKLPQE 1083
+L E +P +
Sbjct: 1105 AEEKILTEFREACHIIPHD 1123
Score = 68 (29.0 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 850
Score = 67 (28.6 bits), Expect = 3.2e-28, Sum P(6) = 3.2e-28
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 804 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 860
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 861 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 916
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 917 AYKFDALITTFEMILSDCPE 936
Score = 56 (24.8 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGG-LGDSS-SQLEPTEQKCSPLQ 104
D S ++QD + + +G S+L +++ GG +G+SS S L P ++ +P +
Sbjct: 22 DDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGNSSASDLVPPPEETTPTE 77
Score = 49 (22.3 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 481 PRVLNEDELPSVRPEEEGEKKRRKKSS 507
Score = 42 (19.8 bits), Expect = 2.5e-28, Sum P(6) = 2.5e-28
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 287 ATKPKDEEGEFTTEIACSSSGLVLNAQ-GGPGKG--SMLKVPAIDYLDAKR-QCEDSKNG 342
+++P+ ++ T +A SS V AQ GPG+G L VP L + + + +G
Sbjct: 359 SSQPQPQQPPSTQPVALSS---VQQAQIMGPGQGPGQRLSVPLKVVLQPQAGSSQGASSG 415
Query: 343 LPIYGN-SLSNITLGDGKRSAQPCT 366
L + S S + S+ P T
Sbjct: 416 LSVVKVLSASEVAALSSPASSTPHT 440
Score = 42 (19.8 bits), Expect = 2.4e-27, Sum P(5) = 2.4e-27
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 433
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVGNS 61
Score = 41 (19.5 bits), Expect = 9.1e-12, Sum P(6) = 9.1e-12
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1338 LDLWWNPTTEDQAIDRA---HRIGQT 1360
L WW P D + R H + QT
Sbjct: 1921 LPKWWEPVRHDGELLRGAARHGVSQT 1946
Score = 41 (19.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQATVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 268
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(6) = 1.1e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1130 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE--IPTDYSDSKLVEAPS 1181
DD+ K+ S SS S ++ ++S + + +E + D S SKL + S
Sbjct: 2068 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADRSRSKLYDEES 2121
Score = 37 (18.1 bits), Expect = 7.6e-10, Sum P(5) = 7.6e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 528 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 559
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 229 (85.7 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 57/168 (33%), Positives = 96/168 (57%)
Query: 1226 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1282
P D+N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 766 PPDNNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 824
Query: 1283 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 825 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 884
Query: 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 885 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 930
Score = 163 (62.4 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 602 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 661
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 662 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 712
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 713 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 767
Query: 1065 DSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
D+N + + ++ LL+ L
Sbjct: 768 DNNEFYNKQEALQHLIRSSGKLILLDKL 795
Score = 72 (30.4 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 52/203 (25%), Positives = 80/203 (39%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 555
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 336 TLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 393
Query: 556 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 609
A SNQ G K + S CS AL + Y P
Sbjct: 394 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFK 451
Query: 610 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 669
+K + R VA++ QP S G ++ L +Q L+W+
Sbjct: 452 DCKVLKQRP---RF---VALK--KQP----SYIGGHESLELRDYQLNGLNWLAHSWCKGN 499
Query: 670 HCSGGILADDQGLGKTISTIALI 692
C ILAD+ GLGKTI TI+ +
Sbjct: 500 SC---ILADEMGLGKTIQTISFL 519
Score = 57 (25.1 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------P-CELAKFDVVI 813
L+V P S L W E++ T ++ +VY G +++ P + KF++++
Sbjct: 533 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILL 589
Query: 814 TTYSIV 819
TTY I+
Sbjct: 590 TTYEIL 595
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVG 127
Q Q + + SG DSSS E ++ + ++ DW Q SG+ P G
Sbjct: 108 QQQQHPASSNSGSEEDSSSS-EDSDDSSNEVKRKKHKDEDW--QMSGSGSPSQSG 159
Score = 47 (21.6 bits), Expect = 8.6e-26, Sum P(5) = 8.6e-26
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQP 558
K+++D +E+ + E S + + + K+ DD ++C ED+ QP
Sbjct: 209 KRQIDSSEEEDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCG-EDVPQP 265
Score = 46 (21.3 bits), Expect = 1.7e-27, Sum P(6) = 1.7e-27
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 53 SLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGD-SSSQLEPTEQKC-SPLQTCSASF 110
S+RN S + D S S SG+ SG D SSSQ ++ S + S S
Sbjct: 9 SVRNSSGESSQSDDDSGS---ASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESE 65
Query: 111 SDWFNQNSGTCCPESVGISQF 131
SD +N P V ++F
Sbjct: 66 SDTSRENKVQAKPPKVDGAEF 86
Score = 45 (20.9 bits), Expect = 4.1e-28, Sum P(5) = 4.1e-28
Identities = 20/95 (21%), Positives = 42/95 (44%)
Query: 25 LSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQD--ELVQDVGSHSNLQLQSEISGAE 82
L++ +L ++++Q S+ G + S+D + +V + ++SG+
Sbjct: 94 LAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSG 153
Query: 83 SGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQN 117
S S S+ E E+ S +C + SD+ +N
Sbjct: 154 SPSQSGSDSESEEEERDKS---SCDETESDYEPKN 185
Score = 42 (19.8 bits), Expect = 4.3e-27, Sum P(6) = 4.3e-27
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 173 VGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSS 211
+ H D SV S +++ D+ G+ G+ GSS
Sbjct: 1 MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSS 39
Score = 38 (18.4 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 19 FADDQGLSIDMDTLLGILEEE-KQPD 43
+ +D+ + D D LL + E+ QP+
Sbjct: 241 YKEDEEMKTDSDDLLEVCGEDVPQPE 266
Score = 37 (18.1 bits), Expect = 1.7e-27, Sum P(6) = 1.7e-27
Identities = 38/166 (22%), Positives = 58/166 (34%)
Query: 259 PCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGK 318
P N+G D SS S+E K KDE+ + + + S SG ++
Sbjct: 113 PASSNSGSE--EDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEERD 170
Query: 319 GSMLKVPAIDYLDAKRQCED--------SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHS 370
S DY + K + + +KNG I G I + + +
Sbjct: 171 KSSCDETESDY-EPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDNDKR 229
Query: 371 HSSR--TKQMVFAKDE----GNDDLFP-CWSTVSDSVEPIDEAVGR 409
S R T + + +DE +DDL C V E E + R
Sbjct: 230 SSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIER 275
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 229 (85.7 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 57/168 (33%), Positives = 96/168 (57%)
Query: 1226 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1282
P D+N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 765 PPDNNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 823
Query: 1283 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 824 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 883
Query: 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 884 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 929
Score = 163 (62.4 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 601 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 660
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 661 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 711
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 712 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 766
Query: 1065 DSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
D+N + + ++ LL+ L
Sbjct: 767 DNNEFYNKQEALQHLIRSSGKLILLDKL 794
Score = 72 (30.4 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 56/230 (24%), Positives = 89/230 (38%)
Query: 471 SRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPE 530
++ P D ++L S + + TL ++ + G+K+ + K + L SPE
Sbjct: 308 NKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPE 367
Query: 531 SIQSNSSDCKSHVDDE--PDICILEDISQPARSNQSLVLG------KTLSMNRSACSNHS 582
++ + C+ + D+ I+E I A SNQ G K + S CS
Sbjct: 368 DVEYYN--CQQELTDDLHKQYQIVERII--AHSNQKSAAGLPDYYCKWQGLPYSECSWED 423
Query: 583 VALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 642
AL + Y P +K + R VA++ QP S
Sbjct: 424 GALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRP---RF---VALK--KQP----SYI 471
Query: 643 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
G + L +Q L+W+ C ILAD+ GLGKTI TI+ +
Sbjct: 472 GGHEGLELRDYQLNGLNWLAHSWCKGNSC---ILADEMGLGKTIQTISFL 518
Score = 57 (25.1 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------P-CELAKFDVVI 813
L+V P S L W E++ T ++ +VY G +++ P + KF++++
Sbjct: 532 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILL 588
Query: 814 TTYSIV 819
TTY I+
Sbjct: 589 TTYEIL 594
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(5) = 2.5e-28
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGI-SQF 131
Q Q + + + G + SS E ++ S + + DW Q SG+ P G S+
Sbjct: 108 QAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDW--QMSGSGSPSQSGSDSES 165
Query: 132 ETPGCSTASSFSEGD 146
E ++ +E D
Sbjct: 166 EEERDKSSCDGTESD 180
Score = 42 (19.8 bits), Expect = 8.2e-28, Sum P(5) = 8.2e-28
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 79 SGAESGGLGD-SSSQLEPTEQKC-SPLQTCSASFSDWFNQNSGTCCPESVGISQF 131
SG+ SG D SSSQ ++ S + S S SD +N P V ++F
Sbjct: 32 SGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEF 86
Score = 42 (19.8 bits), Expect = 8.2e-28, Sum P(5) = 8.2e-28
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 25 LSIDMDTLLGILEEEKQPDRVKSS-PGDLSLRNLSQDELVQDVGS----HSNLQLQSEIS 79
L++ +L ++ Q R SS G + S+D G+ H++ Q S
Sbjct: 94 LAVQRSAMLRKQPQQAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDWQMSGS 153
Query: 80 GAESGGLGDSSSQLEPTEQKC 100
G+ S DS S+ E + C
Sbjct: 154 GSPSQSGSDSESEEERDKSSC 174
Score = 39 (18.8 bits), Expect = 1.8e-24, Sum P(5) = 1.8e-24
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 500 NKKELDGVKEDMEAEIKTRS 519
+K DG + D E + K RS
Sbjct: 170 DKSSCDGTESDYEPKNKVRS 189
Score = 38 (18.4 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 19 FADDQGLSIDMDTLLGILEEE-KQPD 43
+ +D+ + D D LL + E+ QP+
Sbjct: 240 YKEDEEMKTDSDDLLEVCGEDVPQPE 265
Score = 37 (18.1 bits), Expect = 2.6e-27, Sum P(5) = 2.6e-27
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 397 SDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQN 440
SD E + G +S D C S SG S S SQ+
Sbjct: 5 SDE-ESVRNGSGESSQSGDDCGSASGSGSGSSSGSSSDGSSSQS 47
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 207 (77.9 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
Identities = 50/150 (33%), Positives = 80/150 (53%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
G + ++FSQ T+MLD+L+ L Y R+DG++ R A+K+F P + +S
Sbjct: 365 GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFT--FLST 422
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
+A +G+N+ AA V+ D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 423 RAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 482
Query: 1381 LQQKKREMVASAF--GEDETGGQQTRLTVD 1408
K ++ + G G Q+ D
Sbjct: 483 KAASKLQLTNTIIEGGHFTLGAQKPAADAD 512
Score = 135 (52.6 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 950 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 1007
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 1008 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 1065
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 283 GMSALQKKYYKAILMKDLDAFENEMAKKVKLQN------VLSQLRKCVDHPYLFDGVE 334
Score = 88 (36.0 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 627 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 678
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 679 DQGLGKTISTIALIL 693
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 817
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 818 I 818
I
Sbjct: 157 I 157
Score = 49 (22.3 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 428 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 487
SF+ P L S+ QV + ++D+ ES+ A ++ R ++ L
Sbjct: 220 SFV--EPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRV--KAEVATELPRK 275
Query: 488 RQYFPYAQPSTLNKK--------ELDGVKEDMEAEIKTRSMASHLLK 526
+ Y S L KK +LD + +M ++K +++ S L K
Sbjct: 276 TEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRK 322
Score = 39 (18.8 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 511 MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT 570
++ ++K S H+L + E ++S KS P ++ D + + NQS +L KT
Sbjct: 138 LQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-NQSSLLHKT 191
Query: 571 LSMNRSACSNHSVALGKPVVTSQHSSYS 598
LS S + G P+ S YS
Sbjct: 192 LSEFSVVFS--LLLTGTPIQNSLQELYS 217
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 271 (100.5 bits), Expect = 2.9e-28, Sum P(5) = 2.9e-28
Identities = 55/156 (35%), Positives = 91/156 (58%)
Query: 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
GEK ++ S +TK LDLLE L+ S+ + RLDG+ R K V FNT P+++V ++S
Sbjct: 533 GEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSKLVNQFNTNPDINVFLLSS 592
Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
K+ +G+N+V A ++L D WNP T+ Q++ R HR GQ +P + RL ++++I
Sbjct: 593 KSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQLKPCFIYRLFTTGCIDEKIFQ 652
Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416
Q K ++ +S F +++ + DDL +F +
Sbjct: 653 RQLVKNKL-SSKFLDNDATSKSDVFDNDDLKNIFEI 687
Score = 81 (33.6 bits), Expect = 2.9e-28, Sum P(5) = 2.9e-28
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L+ V + +V DE +KN +V L ++ L+GTPIQN + + ++ FL
Sbjct: 325 LSAVKFDLLVCDEGHRLKNSANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNP 384
Query: 945 DPFAVYKSFCSMIKVPISK 963
K F PIS+
Sbjct: 385 GVLPELKLFQRNFITPISR 403
Score = 68 (29.0 bits), Expect = 2.9e-28, Sum P(5) = 2.9e-28
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 751 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAK 808
F+E KG LVVCP +++ W +E R K L+VL + S+ +D K
Sbjct: 248 FME--KGAVVNKVLVVCPVTLISNWRQEFR-KWLGANKLNVLTLNNPMSNEKQDILNFGK 304
Query: 809 FDV 811
+V
Sbjct: 305 LNV 307
Score = 65 (27.9 bits), Expect = 2.9e-28, Sum P(5) = 2.9e-28
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 673 GGILADDQGLGKTISTIALI---LKERP 697
G +LAD+ GLGKT+ TI I LK+ P
Sbjct: 220 GCLLADEMGLGKTLMTITTIWTLLKQNP 247
Score = 57 (25.1 bits), Expect = 2.9e-28, Sum P(5) = 2.9e-28
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 201 GASIGNRLGSSVPEGNLCTYVDV-PYT---DAEVSSHNVASTDSTICHGSEIISDDDYYS 256
G +G R+ ++ P NL + V PY D +V S++ + T + + H + ++ S
Sbjct: 102 GKPMGKRVFTATP--NLDDVISVGPYELELDEKVGSNSTSQTVTRVTHQFKKVAPPTASS 159
Query: 257 AMPCYINTGDTI 268
P Y + D I
Sbjct: 160 RKPLYDDCADAI 171
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 229 (85.7 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 57/168 (33%), Positives = 96/168 (57%)
Query: 1226 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1282
P D+N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 749 PPDNNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 807
Query: 1283 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 808 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 867
Query: 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 868 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 913
Score = 163 (62.4 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 585 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 644
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 645 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 695
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 696 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 750
Query: 1065 DSNSLLRSSVEMAKKLPQERQMYLLNCL 1092
D+N + + ++ LL+ L
Sbjct: 751 DNNEFYNKQEALQHLIRSSGKLILLDKL 778
Score = 72 (30.4 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 52/203 (25%), Positives = 80/203 (39%)
Query: 498 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 555
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 319 TLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 376
Query: 556 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 609
A SNQ G K + S CS AL + Y P
Sbjct: 377 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFK 434
Query: 610 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 669
+K + R VA++ QP S G ++ L +Q L+W+
Sbjct: 435 DCKVLKQRP---RF---VALK--KQP----SYIGGHESLELRDYQLNGLNWLAHSWCKGN 482
Query: 670 HCSGGILADDQGLGKTISTIALI 692
C ILAD+ GLGKTI TI+ +
Sbjct: 483 SC---ILADEMGLGKTIQTISFL 502
Score = 57 (25.1 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 764 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------P-CELAKFDVVI 813
L+V P S L W E++ T ++ +VY G +++ P + KF++++
Sbjct: 516 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILL 572
Query: 814 TTYSIV 819
TTY I+
Sbjct: 573 TTYEIL 578
Score = 47 (21.6 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 73 QLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVG 127
Q Q + + SG DSSS E ++ + ++ DW Q SG+ P G
Sbjct: 91 QQQQHPASSNSGSEEDSSSS-EDSDDSSNEVKRKKHKDEDW--QMSGSGSPSQSG 142
Score = 47 (21.6 bits), Expect = 1.1e-25, Sum P(5) = 1.1e-25
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 501 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQP 558
K+++D +E+ + E S + + + K+ DD ++C ED+ QP
Sbjct: 192 KRQIDSSEEEDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCG-EDVPQP 248
Score = 45 (20.9 bits), Expect = 5.1e-28, Sum P(5) = 5.1e-28
Identities = 20/95 (21%), Positives = 42/95 (44%)
Query: 25 LSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQD--ELVQDVGSHSNLQLQSEISGAE 82
L++ +L ++++Q S+ G + S+D + +V + ++SG+
Sbjct: 77 LAVQRSAMLKKQQQQQQQHPASSNSGSEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSG 136
Query: 83 SGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQN 117
S S S+ E E+ S +C + SD+ +N
Sbjct: 137 SPSQSGSDSESEEEERDKS---SCDETESDYEPKN 168
Score = 42 (19.8 bits), Expect = 5.7e-27, Sum P(6) = 5.7e-27
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 79 SGAESGGLGD-SSSQLEPTEQKC-SPLQTCSASFSDWFNQNSGTCCPESVGISQF 131
SG+ SG D SSSQ ++ S + S S SD +N P V ++F
Sbjct: 15 SGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEF 69
Score = 39 (18.8 bits), Expect = 1.1e-26, Sum P(6) = 1.1e-26
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 67 GSHSNLQLQSEISGAESGGLGDSSSQLEPTEQ-KCSPLQTCSASF 110
GS S SG+ESG +S S + + P + A F
Sbjct: 25 GSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEF 69
Score = 38 (18.4 bits), Expect = 2.6e-27, Sum P(5) = 2.6e-27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 19 FADDQGLSIDMDTLLGILEEE-KQPD 43
+ +D+ + D D LL + E+ QP+
Sbjct: 224 YKEDEEMKTDSDDLLEVCGEDVPQPE 249
Score = 37 (18.1 bits), Expect = 5.7e-27, Sum P(6) = 5.7e-27
Identities = 38/166 (22%), Positives = 58/166 (34%)
Query: 259 PCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGK 318
P N+G D SS S+E K KDE+ + + + S SG ++
Sbjct: 96 PASSNSGSE--EDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEERD 153
Query: 319 GSMLKVPAIDYLDAKRQCED--------SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHS 370
S DY + K + + +KNG I G I + + +
Sbjct: 154 KSSCDETESDY-EPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDNDKR 212
Query: 371 HSSR--TKQMVFAKDE----GNDDLFP-CWSTVSDSVEPIDEAVGR 409
S R T + + +DE +DDL C V E E + R
Sbjct: 213 SSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIER 258
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 209 (78.6 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1096 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1154
Query: 1314 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1155 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1214
Query: 1372 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1410
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1215 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1260
Score = 201 (75.8 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 56/199 (28%), Positives = 96/199 (48%)
Query: 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 890 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 949
Query: 945 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 950 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1001
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 1064
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+
Sbjct: 1002 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINAG 1057
Query: 1065 DSNSLLRSSVEMAKKLPQE 1083
+L E +P +
Sbjct: 1058 AEEKILTEFREACHIIPHD 1076
Score = 68 (29.0 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 764 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 803
Score = 67 (28.6 bits), Expect = 4.3e-28, Sum P(5) = 4.3e-28
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 703 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 762
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 757 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 813
Query: 763 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 807
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 814 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 869
Query: 808 --KFDVVITTYSIVSMEVPK 825
KFD +ITT+ ++ + P+
Sbjct: 870 AYKFDALITTFEMILSDCPE 889
Score = 50 (22.7 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 51 DLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGD----SSSQLEPTEQKCSPLQ 104
D S ++QD + + +G S+L +++ + GG GD S++ L P ++ +P +
Sbjct: 22 DDSFNQVTQDPIEEALGLPSSLDSLDQMN--QDGGGGDVANSSANDLVPPPEETAPTE 77
Score = 49 (22.3 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 496 PSTLNKKELDGVKEDMEAEIKTRSMAS 522
P LN+ EL V+ + E E K R +S
Sbjct: 434 PRVLNEDELPSVRPEEEGEKKRRKKSS 460
Score = 41 (19.5 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 379 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLS 438
+F D DD F + V+ +PI+EA+G SS D + +D G + S S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVANS----S 62
Query: 439 QNQVVHAKEE 448
N +V EE
Sbjct: 63 ANDLVPPPEE 72
Score = 41 (19.5 bits), Expect = 2.0e-11, Sum P(5) = 2.0e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1130 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE--IPTDYSDSKLVEAPS 1181
DD+ K+ S SS S ++ ++S + + +E + D S SKL + S
Sbjct: 2021 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADQSRSKLYDEES 2074
Score = 41 (19.5 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 999
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 180 KVPGNQATVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 221
Score = 40 (19.1 bits), Expect = 2.5e-11, Sum P(5) = 2.5e-11
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1338 LDLWWNPTTEDQAIDRA---HRIGQT 1360
L WW P D + R H + QT
Sbjct: 1874 LPKWWEPIRHDGELLRGAARHGVSQT 1899
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 967 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 998
KG KL + + +R + T D + +P
Sbjct: 481 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 512
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 238 (88.8 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1376 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1410
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1192 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1228
Score = 184 (69.8 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 924 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 975
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 976 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1030
Query: 1057 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 1089
HP L V +S L + E + ++ LL
Sbjct: 1031 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1065
Score = 61 (26.5 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKTI TI +
Sbjct: 758 ILADEMGLGKTIQTIVFL 775
Score = 47 (21.6 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 17 DEFADDQGLSIDMDTLLGILEEEKQPDRVKSS-PGDLSLRNLSQDELVQDVGSHSN-LQL 74
D D + + + + LG+ + ++ P + K + PG R E ++ GS + +
Sbjct: 30 DRMPDKDDIRL-LPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSE--EEFGSERDEYRE 86
Query: 75 QSEISGAESG 84
+SE G+E G
Sbjct: 87 KSESGGSEYG 96
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(5) = 3.1e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMS 1296
K+L+ LE L D RL T+S
Sbjct: 1863 KVLNQLEELLSDMKADVTRLPATLS 1887
Score = 39 (18.8 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 808 KFDVVITTYSIVSME 822
KF V++T+Y +++++
Sbjct: 854 KFHVLLTSYELITID 868
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 236 (88.1 bits), Expect = 5.2e-28, Sum P(5) = 5.2e-28
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1263 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1320 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1380 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
LQ+ K + + ++ + Q + D L LF
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1798
Score = 128 (50.1 bits), Expect = 5.2e-28, Sum P(5) = 5.2e-28
Identities = 56/190 (29%), Positives = 83/190 (43%)
Query: 894 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 954 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 1001
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1462 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1516
Query: 1002 IMLKQVDFTDEERDFYSQLEINSR-----DQFKEYAAAG--TVKQNYV---NILLMLLRL 1051
I + + Y SR D+ AA T K ++ L L
Sbjct: 1517 IQDYYCTLSPLQVQLYEDFA-KSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYL 1575
Query: 1052 RQACDHPLLV 1061
R+ C+HP LV
Sbjct: 1576 RKLCNHPALV 1585
Score = 89 (36.4 bits), Expect = 5.2e-28, Sum P(5) = 5.2e-28
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 602 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 661
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 662 VQKETSSLHCSGGILADDQGLGKTISTIALI 692
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 76 (31.8 bits), Expect = 5.2e-28, Sum P(5) = 5.2e-28
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 763 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 820
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 821 MEV 823
++
Sbjct: 1388 NDI 1390
Score = 51 (23.0 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 507 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 562
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1504 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK 1563
Query: 563 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 597
+ + + L R C NH AL V+T QH +
Sbjct: 1564 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1593
Score = 46 (21.3 bits), Expect = 4.1e-12, Sum P(4) = 4.1e-12
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 663 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722
+ E L +G + Q L K + AL+L + P F++ + K ++ +L + +
Sbjct: 1556 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTE-KLAVQNSSLHDIQHAP 1614
Query: 723 QVNGLDLVKQESDYCRVVPNGSSAKS 748
+++ L KQ C + NGS+++S
Sbjct: 1615 KLSAL---KQLLLDCGL-GNGSTSES 1636
Score = 42 (19.8 bits), Expect = 7.6e-28, Sum P(6) = 7.6e-28
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 261 YINTGDTIFGDPSSFNF 277
YI DTI DPS+ +F
Sbjct: 656 YIAGADTIMEDPSTRDF 672
Score = 39 (18.8 bits), Expect = 7.6e-28, Sum P(6) = 7.6e-28
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 447 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 496
+ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KREENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 38 (18.4 bits), Expect = 5.2e-28, Sum P(5) = 5.2e-28
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 405 EAVGRNSSYHDGCNSFPFKDSGQ-SFIGLSPSLLSQNQVVHAKEEHEDLILESKR---AR 460
+AV N +D + P + + + + ++ S ++ E LI E+
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNVPESSSLIEETNEWPLES 285
Query: 461 FCQEICD 467
FC+E+C+
Sbjct: 286 FCEELCN 292
Score = 37 (18.1 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1118 FCNQCICERLTADDNQCPTRNCKIRLSLSS 1147
+ QCI + L + P N KI +L S
Sbjct: 896 YAAQCIAKLLQQCTTRTPCPNSKIIKNLCS 925
Score = 37 (18.1 bits), Expect = 3.2e-11, Sum P(4) = 3.2e-11
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 1030 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 1085
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLKNTIDINNFDGKSLLEKGDGPAQELVNSLQ 1087
Query: 1086 MY 1087
++
Sbjct: 1088 VF 1089
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 278 (102.9 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 62/160 (38%), Positives = 93/160 (58%)
Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1313
+ +K K +VFSQ T MLD+L + + RLDG+MS R+K + FNT PEV
Sbjct: 264 LPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNTDPEV 323
Query: 1314 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 324 FLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 383
Query: 1374 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1413
++ +I+ KR++ ++ G Q+ L+ N+L
Sbjct: 384 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLS-QSKNFL 422
Score = 117 (46.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 890 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 4 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 63
Query: 950 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 1004
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 64 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 123
Query: 1005 KQVDFTDEERDFYSQL 1020
+++ FY+ +
Sbjct: 124 VYAPLCNKQEIFYTAI 139
Score = 60 (26.2 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 24/129 (18%), Positives = 59/129 (45%)
Query: 504 LDGVKEDMEAEIKTRSMASHLLK--LSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 561
L ED+ A+ + +++ H+L L+P ++ SD V + ++ + +
Sbjct: 76 LSETAEDIIAKEREQNVL-HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEI 134
Query: 562 NQSLVLGKTLSMNRSACSNHSVAL---GKPVVTSQHS-SYSDYPGYPGVPLTGLGGMKSK 617
+ ++ +T++ +C +V L G+P S+ S +YS+ +P + ++ +
Sbjct: 135 FYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPE 194
Query: 618 ASDERLILQ 626
ER +++
Sbjct: 195 VKRERTVVE 203
Score = 55 (24.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 29/123 (23%), Positives = 59/123 (47%)
Query: 957 IKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 1007
++VP K V Y L Q + T ++ RT + + E + P PK K +
Sbjct: 114 LEVP-PKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSI 172
Query: 1008 DFTDEERDFYSQLE-----INSRDQFKEYAAAGTVK-QNYVNILL--MLLRLRQACDHPL 1059
++++ ++ F S+LE I + + G + ++ VN+ L +++ LR+ C+HP
Sbjct: 173 NYSELDQ-FPSELEKLISQIQPEVKRERTVVEGNIPIESEVNLKLQNIMMLLRKCCNHPY 231
Query: 1060 LVK 1062
+++
Sbjct: 232 MIE 234
Score = 45 (20.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 988 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 36 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 95
Query: 1045 LLMLL 1049
L +L
Sbjct: 96 LHQIL 100
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 238 (88.8 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1257 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1315
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1068 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFC 1127
Query: 1316 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1128 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1187
Query: 1376 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1410
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1188 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1224
Score = 183 (69.5 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 877 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 936
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 860 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 919
Query: 937 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 920 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 971
Query: 997 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 972 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1026
Query: 1057 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 1089
HP L V +S L + E + ++ LL
Sbjct: 1027 HPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLL 1061
Score = 61 (26.5 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 675 ILADDQGLGKTISTIALI 692
ILAD+ GLGKTI TI +
Sbjct: 754 ILADEMGLGKTIQTIVFL 771
Score = 40 (19.1 bits), Expect = 7.0e-08, Sum P(4) = 7.0e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1272 KMLDLLEASLKDSSIQYRRLDGTMS 1296
K+L+ LE L D RL T+S
Sbjct: 1861 KVLNQLEELLSDMKADVTRLPATLS 1885
Score = 39 (18.8 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 808 KFDVVITTYSIVSME 822
KF V++T+Y +++++
Sbjct: 850 KFHVLLTSYELITID 864
Score = 37 (18.1 bits), Expect = 1.6e-25, Sum P(4) = 1.6e-25
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 716 DEEDNGIQVNGLDLVKQESDYCRVVPNG 743
D E+ G + + +YCRV +G
Sbjct: 434 DYEEEGEEEGEKEEEDDHMEYCRVCKDG 461
WARNING: HSPs involving 325 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1416 1385 0.00089 124 3 11 23 0.43 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 575
No. of states in DFA: 630 (67 KB)
Total size of DFA: 593 KB (2265 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 134.20u 0.09s 134.29t Elapsed: 00:00:07
Total cpu time: 134.29u 0.09s 134.38t Elapsed: 00:00:07
Start: Tue May 21 19:03:21 2013 End: Tue May 21 19:03:28 2013
WARNINGS ISSUED: 2