Query 000566
Match_columns 1416
No_of_seqs 341 out of 2228
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 19:33:31 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 4E-104 9E-109 895.1 35.5 576 639-1415 175-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 2.5E-87 5.5E-92 786.6 40.0 545 639-1416 316-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 2.2E-85 4.8E-90 776.6 37.8 459 641-1396 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 5.4E-82 1.2E-86 752.5 38.6 473 641-1416 198-699 (923)
5 KOG0384 Chromodomain-helicase 100.0 9.7E-83 2.1E-87 784.7 32.9 601 492-1414 241-856 (1373)
6 KOG0392 SNF2 family DNA-depend 100.0 8.9E-81 1.9E-85 762.0 37.3 505 646-1415 972-1495(1549)
7 KOG1001 Helicase-like transcri 100.0 3.3E-81 7.2E-86 775.7 30.8 556 632-1395 117-673 (674)
8 PLN03142 Probable chromatin-re 100.0 5.8E-79 1.3E-83 781.6 47.4 474 641-1415 162-641 (1033)
9 KOG0389 SNF2 family DNA-depend 100.0 1.2E-79 2.5E-84 731.2 34.8 495 648-1397 398-913 (941)
10 KOG0391 SNF2 family DNA-depend 100.0 1E-77 2.3E-82 723.9 34.5 581 641-1416 607-1429(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 6.1E-76 1.3E-80 685.1 33.1 544 644-1398 562-1180(1185)
12 KOG0386 Chromatin remodeling c 100.0 7.5E-69 1.6E-73 651.5 19.8 461 639-1394 384-860 (1157)
13 KOG0390 DNA repair protein, SN 100.0 4.5E-66 9.8E-71 635.5 38.9 494 642-1415 231-748 (776)
14 KOG1015 Transcription regulato 100.0 1.2E-61 2.5E-66 578.0 30.1 578 647-1415 666-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 8.2E-61 1.8E-65 629.6 35.9 495 644-1415 333-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 7.9E-54 1.7E-58 502.5 27.0 578 647-1415 252-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1.7E-52 3.8E-57 477.3 32.4 418 646-1392 195-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 4.1E-52 8.8E-57 533.3 34.8 420 647-1395 150-628 (956)
19 KOG0298 DEAD box-containing he 100.0 2.3E-50 4.9E-55 500.7 18.3 258 759-1061 419-691 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-42 2.4E-47 401.6 18.2 291 653-1061 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 2.1E-34 4.6E-39 359.3 36.0 115 1260-1380 495-615 (732)
22 KOG0383 Predicted helicase [Ge 100.0 3.1E-37 6.6E-42 378.3 9.1 398 648-1326 294-696 (696)
23 PRK13766 Hef nuclease; Provisi 100.0 7.7E-30 1.7E-34 332.4 40.5 125 1260-1389 364-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 8E-25 1.7E-29 255.4 34.9 460 648-1392 14-501 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 9.4E-23 2E-27 248.6 33.1 122 1260-1384 282-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 1.6E-22 3.5E-27 250.9 34.2 113 1260-1373 343-456 (501)
27 KOG1123 RNA polymerase II tran 99.9 2E-20 4.2E-25 215.4 23.7 113 1260-1378 542-659 (776)
28 PRK11776 ATP-dependent RNA hel 99.8 4.8E-18 1E-22 209.4 31.5 109 1260-1372 241-349 (460)
29 PTZ00110 helicase; Provisional 99.8 4.4E-18 9.6E-23 213.0 30.9 109 1260-1372 376-484 (545)
30 KOG0354 DEAD-box like helicase 99.8 4.4E-17 9.6E-22 201.1 34.7 126 1260-1392 412-548 (746)
31 PRK11192 ATP-dependent RNA hel 99.8 9.3E-18 2E-22 205.4 28.9 104 1260-1365 244-347 (434)
32 TIGR00614 recQ_fam ATP-depende 99.8 1E-17 2.3E-22 206.8 27.1 105 1260-1366 225-329 (470)
33 PLN00206 DEAD-box ATP-dependen 99.8 2.1E-17 4.6E-22 206.1 29.4 107 1262-1372 368-475 (518)
34 PRK04837 ATP-dependent RNA hel 99.8 1.9E-17 4E-22 202.1 27.9 108 1261-1372 255-362 (423)
35 PRK10590 ATP-dependent RNA hel 99.8 2.2E-17 4.8E-22 203.2 28.3 108 1261-1372 245-352 (456)
36 PRK04537 ATP-dependent RNA hel 99.8 4.6E-17 9.9E-22 204.7 28.9 108 1260-1371 256-363 (572)
37 PTZ00424 helicase 45; Provisio 99.8 6.3E-17 1.4E-21 195.8 27.6 108 1261-1372 267-374 (401)
38 PRK01297 ATP-dependent RNA hel 99.8 9.4E-17 2E-21 198.7 28.9 109 1260-1372 334-442 (475)
39 PRK11634 ATP-dependent RNA hel 99.8 2.3E-16 4.9E-21 199.8 32.5 101 1261-1363 245-345 (629)
40 PRK11057 ATP-dependent DNA hel 99.8 1E-16 2.2E-21 203.4 28.4 101 1260-1362 235-335 (607)
41 TIGR01389 recQ ATP-dependent D 99.8 1.2E-16 2.6E-21 202.8 27.9 102 1261-1364 224-325 (591)
42 TIGR00643 recG ATP-dependent D 99.7 1.1E-15 2.3E-20 194.9 30.8 79 1284-1364 481-560 (630)
43 PRK11448 hsdR type I restricti 99.7 5.8E-16 1.3E-20 204.9 28.6 106 1261-1369 698-815 (1123)
44 TIGR00580 mfd transcription-re 99.7 1.7E-15 3.8E-20 197.2 28.1 107 1261-1371 660-769 (926)
45 PRK10689 transcription-repair 99.7 2.9E-15 6.3E-20 199.0 28.8 102 1261-1364 809-913 (1147)
46 PRK10917 ATP-dependent DNA hel 99.7 6.8E-15 1.5E-19 188.9 31.1 81 1285-1369 505-586 (681)
47 PLN03137 ATP-dependent DNA hel 99.7 4.4E-15 9.5E-20 191.0 26.5 104 1261-1366 680-783 (1195)
48 KOG0331 ATP-dependent RNA heli 99.7 9.1E-15 2E-19 176.2 24.8 101 1260-1362 340-440 (519)
49 TIGR03817 DECH_helic helicase/ 99.6 7.9E-14 1.7E-18 180.0 29.0 115 1261-1379 271-393 (742)
50 PRK13767 ATP-dependent helicas 99.6 1.7E-13 3.8E-18 180.1 29.0 105 1261-1367 284-395 (876)
51 PRK02362 ski2-like helicase; P 99.6 1.7E-13 3.8E-18 178.0 28.5 82 1287-1370 305-395 (737)
52 PRK01172 ski2-like helicase; P 99.5 9.7E-13 2.1E-17 169.8 28.3 72 1288-1362 288-368 (674)
53 TIGR00348 hsdR type I site-spe 99.5 1.1E-12 2.3E-17 168.2 27.3 108 1261-1370 514-649 (667)
54 TIGR01587 cas3_core CRISPR-ass 99.5 1.3E-12 2.8E-17 156.1 26.0 108 1260-1372 221-338 (358)
55 COG0513 SrmB Superfamily II DN 99.5 3E-12 6.6E-17 159.5 30.3 119 1262-1385 274-392 (513)
56 cd00079 HELICc Helicase superf 99.5 6E-14 1.3E-18 141.7 11.5 105 1260-1366 27-131 (131)
57 PRK00254 ski2-like helicase; P 99.5 1.7E-12 3.7E-17 168.4 27.9 84 1287-1372 297-388 (720)
58 TIGR03714 secA2 accessory Sec 99.5 5.2E-12 1.1E-16 159.6 24.6 99 1260-1363 423-530 (762)
59 PRK09200 preprotein translocas 99.4 3.1E-11 6.6E-16 154.1 29.9 113 1260-1381 427-547 (790)
60 KOG0330 ATP-dependent RNA heli 99.4 1E-11 2.2E-16 141.7 21.1 123 1260-1386 299-423 (476)
61 COG1200 RecG RecG-like helicas 99.4 1.4E-11 3E-16 151.1 23.3 73 1285-1359 507-580 (677)
62 KOG0328 Predicted ATP-dependen 99.4 1.7E-11 3.6E-16 134.5 21.1 109 1262-1374 267-375 (400)
63 PRK12898 secA preprotein trans 99.4 4.8E-11 1E-15 149.4 28.0 114 1260-1382 472-593 (656)
64 PF04851 ResIII: Type III rest 99.4 6.8E-13 1.5E-17 141.9 10.1 167 648-928 2-183 (184)
65 PF00271 Helicase_C: Helicase 99.4 3.1E-13 6.6E-18 125.5 6.4 78 1279-1358 1-78 (78)
66 TIGR02621 cas3_GSU0051 CRISPR- 99.4 1E-10 2.2E-15 149.5 30.5 104 1260-1368 271-390 (844)
67 TIGR00963 secA preprotein tran 99.4 1.1E-11 2.3E-16 156.0 18.9 102 1260-1365 404-512 (745)
68 smart00487 DEXDc DEAD-like hel 99.3 6E-12 1.3E-16 134.8 13.0 167 648-936 7-179 (201)
69 PHA02653 RNA helicase NPH-II; 99.3 3.8E-10 8.3E-15 143.3 31.0 110 1261-1376 395-518 (675)
70 TIGR03158 cas3_cyano CRISPR-as 99.3 1.9E-10 4.1E-15 137.6 26.1 85 1260-1355 271-357 (357)
71 KOG0350 DEAD-box ATP-dependent 99.3 7.9E-11 1.7E-15 137.9 21.9 108 1260-1371 428-539 (620)
72 PRK05580 primosome assembly pr 99.3 1.3E-10 2.9E-15 149.2 25.9 95 1274-1370 439-549 (679)
73 KOG0333 U5 snRNP-like RNA heli 99.3 1.4E-10 3E-15 136.5 21.3 108 1261-1372 517-624 (673)
74 COG4096 HsdR Type I site-speci 99.3 9.6E-11 2.1E-15 145.3 19.9 107 1261-1369 426-545 (875)
75 PRK09401 reverse gyrase; Revie 99.3 5E-10 1.1E-14 150.0 27.6 90 1262-1357 329-431 (1176)
76 smart00490 HELICc helicase sup 99.3 1E-11 2.2E-16 114.9 7.4 81 1276-1358 2-82 (82)
77 cd00046 DEXDc DEAD-like helica 99.3 3.7E-11 7.9E-16 121.2 11.9 137 673-927 2-144 (144)
78 PRK09751 putative ATP-dependen 99.2 9.7E-10 2.1E-14 148.0 25.0 95 1261-1357 244-371 (1490)
79 COG1201 Lhr Lhr-like helicases 99.2 2.2E-09 4.8E-14 136.8 25.3 120 1262-1387 254-375 (814)
80 TIGR00595 priA primosomal prot 99.2 5.9E-10 1.3E-14 138.6 19.2 96 1275-1372 272-383 (505)
81 KOG0335 ATP-dependent RNA heli 99.2 2.8E-10 6E-15 135.9 14.9 107 1260-1368 336-442 (482)
82 KOG4284 DEAD box protein [Tran 99.2 3.1E-10 6.7E-15 135.6 15.0 109 1261-1372 272-380 (980)
83 TIGR01054 rgy reverse gyrase. 99.1 2.9E-09 6.2E-14 143.0 24.9 75 1262-1341 327-408 (1171)
84 PRK13104 secA preprotein trans 99.1 2.6E-09 5.7E-14 136.4 22.7 113 1260-1381 443-593 (896)
85 TIGR01970 DEAH_box_HrpB ATP-de 99.1 4.5E-09 9.8E-14 136.6 25.3 107 1262-1373 210-337 (819)
86 COG0514 RecQ Superfamily II DN 99.1 3.4E-09 7.4E-14 130.8 22.8 103 1261-1365 230-332 (590)
87 COG1205 Distinct helicase fami 99.1 4.1E-09 9E-14 137.4 23.7 118 1260-1381 305-431 (851)
88 KOG0342 ATP-dependent RNA heli 99.1 4.2E-09 9.1E-14 124.0 21.2 99 1262-1362 331-429 (543)
89 KOG0336 ATP-dependent RNA heli 99.1 3.9E-09 8.4E-14 120.9 19.6 110 1260-1372 464-573 (629)
90 KOG0343 RNA Helicase [RNA proc 99.1 8E-09 1.7E-13 122.4 22.0 122 1260-1386 312-435 (758)
91 PRK12906 secA preprotein trans 99.1 4.7E-09 1E-13 133.6 20.9 101 1260-1364 439-547 (796)
92 KOG0348 ATP-dependent RNA heli 99.1 1.9E-08 4E-13 119.1 23.8 123 1260-1388 424-568 (708)
93 COG1204 Superfamily II helicas 99.0 9.5E-09 2.1E-13 132.4 21.9 81 1275-1360 307-396 (766)
94 PRK11664 ATP-dependent RNA hel 99.0 1.4E-08 3E-13 132.3 23.5 109 1261-1374 212-341 (812)
95 COG1202 Superfamily II helicas 99.0 9.5E-09 2.1E-13 122.2 19.4 118 1262-1382 441-572 (830)
96 KOG0339 ATP-dependent RNA heli 99.0 1.9E-08 4.1E-13 118.2 21.4 111 1261-1375 468-578 (731)
97 PRK14701 reverse gyrase; Provi 99.0 3.4E-08 7.3E-13 135.6 27.0 94 1261-1360 330-446 (1638)
98 PRK09694 helicase Cas3; Provis 99.0 3.2E-08 6.9E-13 128.9 25.2 98 1260-1360 559-665 (878)
99 COG1197 Mfd Transcription-repa 99.0 1E-07 2.2E-12 123.6 27.9 97 1271-1371 813-912 (1139)
100 PRK12904 preprotein translocas 99.0 5.7E-08 1.2E-12 124.4 25.6 112 1260-1380 429-578 (830)
101 KOG0338 ATP-dependent RNA heli 99.0 1.6E-08 3.4E-13 119.1 18.0 98 1262-1361 427-524 (691)
102 PRK13107 preprotein translocas 98.9 4.7E-08 1E-12 124.9 23.0 113 1260-1381 448-597 (908)
103 COG4889 Predicted helicase [Ge 98.9 2E-08 4.3E-13 123.4 17.6 77 1285-1362 499-577 (1518)
104 KOG0345 ATP-dependent RNA heli 98.9 2.1E-07 4.4E-12 109.4 24.8 104 1260-1365 254-359 (567)
105 PRK12900 secA preprotein trans 98.9 4.8E-07 1.1E-11 116.2 28.3 114 1260-1382 597-718 (1025)
106 cd00268 DEADc DEAD-box helicas 98.8 2.3E-08 5E-13 109.7 12.8 109 649-821 21-132 (203)
107 PRK11131 ATP-dependent RNA hel 98.7 1.2E-06 2.6E-11 117.0 25.5 108 1261-1375 286-414 (1294)
108 KOG0952 DNA/RNA helicase MER3/ 98.7 1.2E-06 2.6E-11 111.0 23.1 83 1291-1375 402-494 (1230)
109 KOG0332 ATP-dependent RNA heli 98.6 2.5E-07 5.4E-12 105.9 12.6 106 1262-1371 331-442 (477)
110 PF00270 DEAD: DEAD/DEAH box h 98.6 1.3E-07 2.7E-12 100.3 9.4 158 652-934 2-168 (169)
111 PF13872 AAA_34: P-loop contai 98.6 6.5E-07 1.4E-11 102.5 15.2 246 649-1019 37-302 (303)
112 PRK12326 preprotein translocas 98.6 5.4E-06 1.2E-10 104.2 24.5 115 1260-1383 426-555 (764)
113 KOG0341 DEAD-box protein abstr 98.6 1.7E-07 3.8E-12 107.0 9.7 125 1260-1388 420-548 (610)
114 KOG0334 RNA helicase [RNA proc 98.5 1.9E-06 4.1E-11 110.2 18.7 107 1261-1371 613-719 (997)
115 TIGR01967 DEAH_box_HrpA ATP-de 98.5 1E-05 2.2E-10 108.6 26.0 108 1261-1375 279-407 (1283)
116 COG1203 CRISPR-associated heli 98.5 7.6E-06 1.6E-10 106.8 24.5 127 1260-1390 439-570 (733)
117 TIGR00631 uvrb excinuclease AB 98.5 9.2E-07 2E-11 113.2 14.1 117 1260-1381 441-564 (655)
118 COG0556 UvrB Helicase subunit 98.5 0.00023 5E-09 85.7 32.6 123 1260-1385 445-572 (663)
119 KOG1513 Nuclear helicase MOP-3 98.5 1.7E-05 3.8E-10 97.6 23.3 86 1305-1392 851-944 (1300)
120 PF11496 HDA2-3: Class II hist 98.4 1.1E-05 2.5E-10 93.8 18.3 124 1260-1384 116-257 (297)
121 PRK05298 excinuclease ABC subu 98.4 2.5E-06 5.3E-11 109.8 13.7 107 1260-1371 445-556 (652)
122 COG4098 comFA Superfamily II D 98.3 0.00038 8.3E-09 79.9 28.7 97 1260-1360 304-404 (441)
123 TIGR00596 rad1 DNA repair prot 98.3 8E-05 1.7E-09 97.0 26.4 51 1333-1386 478-528 (814)
124 KOG0326 ATP-dependent RNA heli 98.3 4.7E-07 1E-11 101.6 4.5 98 1262-1361 323-420 (459)
125 PRK12899 secA preprotein trans 98.3 0.00034 7.4E-09 90.6 30.6 112 1260-1381 567-687 (970)
126 KOG0340 ATP-dependent RNA heli 98.3 2.5E-06 5.5E-11 97.5 9.7 101 1260-1362 253-353 (442)
127 PF13871 Helicase_C_4: Helicas 98.3 2.2E-06 4.8E-11 97.9 9.2 94 1302-1397 52-153 (278)
128 PRK13103 secA preprotein trans 98.2 6E-05 1.3E-09 97.2 20.8 113 1260-1381 448-597 (913)
129 PRK12903 secA preprotein trans 98.1 0.00027 5.9E-09 90.5 23.7 113 1260-1381 425-545 (925)
130 KOG0327 Translation initiation 98.0 9.3E-06 2E-10 94.2 7.5 113 1262-1380 264-376 (397)
131 KOG0344 ATP-dependent RNA heli 98.0 1.7E-05 3.7E-10 96.2 9.8 98 1263-1362 389-487 (593)
132 COG1110 Reverse gyrase [DNA re 97.9 0.0003 6.5E-09 90.2 19.2 75 1261-1341 335-416 (1187)
133 KOG0947 Cytoplasmic exosomal R 97.8 0.00029 6.3E-09 89.2 16.4 80 1291-1373 636-723 (1248)
134 KOG0951 RNA helicase BRR2, DEA 97.8 0.0009 1.9E-08 87.0 20.9 72 1285-1359 607-689 (1674)
135 COG1198 PriA Primosomal protei 97.8 0.0015 3.1E-08 84.1 21.9 95 1276-1372 495-605 (730)
136 KOG0347 RNA helicase [RNA proc 97.6 5.7E-05 1.2E-09 90.6 5.9 98 1260-1359 462-559 (731)
137 PRK12901 secA preprotein trans 97.6 0.013 2.9E-07 76.7 26.8 113 1260-1381 627-747 (1112)
138 KOG0949 Predicted helicase, DE 97.6 0.01 2.2E-07 76.1 24.4 73 1291-1365 968-1041(1330)
139 KOG0353 ATP-dependent DNA heli 97.5 0.004 8.6E-08 71.8 17.1 88 1260-1349 316-403 (695)
140 KOG0953 Mitochondrial RNA heli 97.4 0.00048 1E-08 83.3 9.5 108 1260-1371 357-476 (700)
141 KOG0349 Putative DEAD-box RNA 97.4 0.00037 7.9E-09 81.4 8.0 96 1260-1357 504-602 (725)
142 KOG0948 Nuclear exosomal RNA h 97.4 0.0037 8E-08 77.9 16.4 114 1260-1376 382-542 (1041)
143 PF07652 Flavi_DEAD: Flaviviru 97.4 0.0008 1.7E-08 69.8 9.3 43 886-929 92-138 (148)
144 KOG0351 ATP-dependent DNA heli 97.3 0.00042 9.1E-09 91.2 8.3 105 1260-1366 484-588 (941)
145 KOG0823 Predicted E3 ubiquitin 97.3 9E-05 2E-09 81.1 1.4 57 1094-1150 45-101 (230)
146 CHL00122 secA preprotein trans 97.2 0.022 4.7E-07 74.1 21.2 65 1260-1327 423-488 (870)
147 KOG0346 RNA helicase [RNA proc 97.2 0.0009 1.9E-08 79.0 7.8 109 1261-1372 268-410 (569)
148 PRK15483 type III restriction- 97.1 0.0037 7.9E-08 82.2 13.5 37 892-929 204-240 (986)
149 PLN03208 E3 ubiquitin-protein 97.0 0.00035 7.5E-09 75.4 2.4 52 1096-1149 18-84 (193)
150 PRK12902 secA preprotein trans 96.9 0.047 1E-06 71.1 21.0 64 1260-1326 438-502 (939)
151 PF13923 zf-C3HC4_2: Zinc fing 96.9 0.00044 9.6E-09 55.9 1.6 37 1099-1136 1-38 (39)
152 smart00504 Ubox Modified RING 96.8 0.00056 1.2E-08 61.0 1.7 48 1098-1148 3-50 (63)
153 KOG0317 Predicted E3 ubiquitin 96.8 0.00053 1.1E-08 77.2 1.7 50 1097-1149 240-289 (293)
154 PF15227 zf-C3HC4_4: zinc fing 96.7 0.00089 1.9E-08 55.1 2.1 34 1099-1132 1-34 (42)
155 KOG0978 E3 ubiquitin ligase in 96.7 0.00057 1.2E-08 86.0 1.3 48 1098-1147 645-692 (698)
156 KOG0320 Predicted E3 ubiquitin 96.7 0.00072 1.6E-08 71.1 1.5 47 1096-1145 131-179 (187)
157 KOG0352 ATP-dependent DNA heli 96.4 0.0063 1.4E-07 71.7 7.3 103 1262-1366 256-358 (641)
158 COG0610 Type I site-specific r 96.4 0.015 3.3E-07 78.1 12.0 69 1299-1369 579-650 (962)
159 KOG0337 ATP-dependent RNA heli 96.4 0.0038 8.1E-08 73.6 5.2 99 1261-1361 261-359 (529)
160 PF00097 zf-C3HC4: Zinc finger 96.2 0.0025 5.4E-08 51.9 1.9 37 1099-1135 1-39 (41)
161 PF13086 AAA_11: AAA domain; P 96.1 0.11 2.3E-06 57.6 14.8 39 650-695 2-41 (236)
162 COG4581 Superfamily II RNA hel 96.0 0.035 7.5E-07 73.6 11.4 165 645-942 115-283 (1041)
163 KOG2164 Predicted E3 ubiquitin 96.0 0.0036 7.9E-08 75.6 2.4 52 1096-1147 186-239 (513)
164 PF13920 zf-C3HC4_3: Zinc fing 95.8 0.0061 1.3E-07 52.0 2.4 44 1097-1143 3-47 (50)
165 PF13445 zf-RING_UBOX: RING-ty 95.7 0.0037 8E-08 51.7 0.8 30 1099-1129 1-34 (43)
166 TIGR00599 rad18 DNA repair pro 95.6 0.0055 1.2E-07 73.7 1.9 48 1096-1146 26-73 (397)
167 PHA02929 N1R/p28-like protein; 95.5 0.011 2.5E-07 66.5 3.9 46 1096-1144 174-227 (238)
168 smart00184 RING Ring finger. E 95.5 0.0081 1.8E-07 47.1 1.9 37 1099-1135 1-37 (39)
169 KOG1802 RNA helicase nonsense 95.3 0.045 9.7E-07 68.0 8.1 80 649-800 410-490 (935)
170 TIGR01407 dinG_rel DnaQ family 95.2 0.13 2.8E-06 69.1 13.1 101 1260-1365 673-809 (850)
171 COG5574 PEX10 RING-finger-cont 95.1 0.0094 2E-07 66.7 1.4 48 1097-1146 216-264 (271)
172 TIGR03117 cas_csf4 CRISPR-asso 94.7 0.2 4.2E-06 64.5 12.1 81 1260-1345 470-564 (636)
173 smart00488 DEXDc2 DEAD-like he 94.6 0.16 3.4E-06 59.7 10.2 41 650-693 9-49 (289)
174 smart00489 DEXDc3 DEAD-like he 94.6 0.16 3.4E-06 59.7 10.2 41 650-693 9-49 (289)
175 PF04564 U-box: U-box domain; 94.5 0.019 4.1E-07 53.2 1.7 47 1097-1145 5-51 (73)
176 cd00162 RING RING-finger (Real 94.4 0.025 5.4E-07 46.0 2.0 39 1098-1136 1-40 (45)
177 PHA02926 zinc finger-like prot 94.3 0.022 4.8E-07 62.4 2.1 47 1096-1144 170-230 (242)
178 COG0653 SecA Preprotein transl 94.0 1.7 3.7E-05 57.0 18.2 96 1260-1359 428-534 (822)
179 PF13639 zf-RING_2: Ring finge 93.9 0.031 6.8E-07 46.3 1.7 38 1098-1136 2-42 (44)
180 TIGR00570 cdk7 CDK-activating 93.8 0.041 8.9E-07 63.9 3.0 49 1097-1147 4-57 (309)
181 PF14634 zf-RING_5: zinc-RING 93.7 0.038 8.3E-07 45.9 1.9 37 1099-1136 2-41 (44)
182 PF13307 Helicase_C_2: Helicas 93.3 0.26 5.7E-06 52.9 8.0 100 1260-1365 8-145 (167)
183 PF11789 zf-Nse: Zinc-finger o 93.2 0.039 8.5E-07 48.6 1.2 45 1096-1140 11-57 (57)
184 PRK10536 hypothetical protein; 93.1 0.42 9.1E-06 54.8 9.5 40 891-932 178-217 (262)
185 KOG0287 Postreplication repair 92.8 0.032 7E-07 63.9 0.1 46 1097-1145 24-69 (442)
186 COG3587 Restriction endonuclea 92.6 0.25 5.4E-06 63.5 7.5 35 892-927 208-242 (985)
187 PF02562 PhoH: PhoH-like prote 92.5 0.22 4.9E-06 55.3 6.2 43 889-933 119-161 (205)
188 COG5432 RAD18 RING-finger-cont 92.3 0.06 1.3E-06 60.5 1.4 38 1097-1135 26-63 (391)
189 TIGR01407 dinG_rel DnaQ family 92.2 0.71 1.5E-05 62.2 11.6 42 648-692 244-285 (850)
190 KOG1132 Helicase of the DEAD s 91.3 0.81 1.8E-05 59.3 9.9 85 1260-1345 560-659 (945)
191 PF14835 zf-RING_6: zf-RING of 91.1 0.17 3.7E-06 45.3 2.6 41 1097-1142 8-49 (65)
192 TIGR00376 DNA helicase, putati 90.8 2.7 6E-05 54.7 14.4 41 648-694 156-196 (637)
193 PRK08074 bifunctional ATP-depe 90.7 1.2 2.7E-05 60.4 11.5 104 1260-1365 751-888 (928)
194 COG1199 DinG Rad3-related DNA 90.7 1.7 3.6E-05 56.9 12.5 102 1260-1365 478-612 (654)
195 PRK14873 primosome assembly pr 90.7 0.61 1.3E-05 60.6 8.2 57 761-820 189-252 (665)
196 KOG1785 Tyrosine kinase negati 89.7 0.2 4.2E-06 58.7 2.3 52 1091-1144 364-416 (563)
197 PRK07246 bifunctional ATP-depe 89.1 2.3 5E-05 57.0 12.0 101 1260-1365 646-778 (820)
198 KOG0824 Predicted E3 ubiquitin 89.1 0.21 4.6E-06 57.1 2.0 54 1096-1151 7-60 (324)
199 KOG4172 Predicted E3 ubiquitin 89.0 0.14 2.9E-06 44.0 0.3 46 1096-1143 7-53 (62)
200 smart00492 HELICc3 helicase su 88.6 2.1 4.5E-05 45.0 8.8 71 1273-1345 3-83 (141)
201 PF13604 AAA_30: AAA domain; P 88.3 4.1 8.8E-05 45.0 11.4 38 650-692 2-39 (196)
202 KOG0311 Predicted E3 ubiquitin 87.9 0.068 1.5E-06 62.1 -2.9 46 1097-1144 44-90 (381)
203 PF07517 SecA_DEAD: SecA DEAD- 87.4 1.8 3.9E-05 50.2 8.2 102 647-822 75-180 (266)
204 TIGR00604 rad3 DNA repair heli 86.9 2.2 4.7E-05 56.4 9.7 103 1260-1364 521-668 (705)
205 KOG4150 Predicted ATP-dependen 86.2 1.5 3.3E-05 54.0 6.8 99 1260-1360 524-630 (1034)
206 COG5220 TFB3 Cdk activating ki 86.1 0.23 5E-06 54.6 0.1 51 1097-1147 11-67 (314)
207 COG5152 Uncharacterized conser 85.8 0.31 6.8E-06 52.2 0.9 35 1096-1130 196-230 (259)
208 KOG0347 RNA helicase [RNA proc 85.4 1.4 3E-05 54.5 6.0 57 763-820 266-325 (731)
209 COG5540 RING-finger-containing 84.7 0.4 8.7E-06 54.7 1.1 45 1097-1143 324-371 (374)
210 PRK10875 recD exonuclease V su 84.5 6.4 0.00014 51.0 11.9 42 888-931 264-305 (615)
211 PRK11747 dinG ATP-dependent DN 84.4 3.9 8.4E-05 53.9 10.2 76 1262-1342 535-616 (697)
212 KOG2177 Predicted E3 ubiquitin 83.9 0.41 9E-06 55.1 0.8 42 1096-1140 13-54 (386)
213 COG5222 Uncharacterized conser 83.6 0.5 1.1E-05 53.5 1.3 42 1097-1140 275-317 (427)
214 smart00491 HELICc2 helicase su 83.4 3.8 8.2E-05 43.1 7.6 71 1273-1345 3-84 (142)
215 KOG0340 ATP-dependent RNA heli 83.2 7 0.00015 46.4 10.2 58 763-821 78-138 (442)
216 TIGR01447 recD exodeoxyribonuc 82.8 7.5 0.00016 50.2 11.5 41 889-931 259-299 (586)
217 PF09848 DUF2075: Uncharacteri 82.7 4.5 9.7E-05 48.9 9.0 19 676-694 6-24 (352)
218 KOG1803 DNA helicase [Replicat 82.2 4.4 9.6E-05 51.0 8.6 43 646-694 182-224 (649)
219 TIGR01448 recD_rel helicase, p 81.5 9.6 0.00021 50.5 12.1 41 889-931 416-456 (720)
220 KOG0922 DEAH-box RNA helicase 81.0 6 0.00013 50.4 9.3 113 1260-1375 257-393 (674)
221 KOG2879 Predicted E3 ubiquitin 80.9 0.87 1.9E-05 51.7 1.9 43 1094-1136 237-281 (298)
222 PRK07246 bifunctional ATP-depe 80.5 8 0.00017 52.0 11.0 40 648-690 244-283 (820)
223 PRK08074 bifunctional ATP-depe 80.2 12 0.00025 51.3 12.5 39 648-689 256-294 (928)
224 PF06862 DUF1253: Protein of u 79.6 15 0.00033 45.5 12.0 125 1260-1385 299-430 (442)
225 PF02399 Herpes_ori_bp: Origin 77.4 14 0.00031 48.6 11.2 38 890-927 143-190 (824)
226 KOG0344 ATP-dependent RNA heli 76.8 2.4 5.1E-05 53.1 4.0 111 651-821 160-275 (593)
227 KOG0329 ATP-dependent RNA heli 75.7 1.5 3.3E-05 49.3 1.8 46 1317-1362 302-347 (387)
228 KOG4692 Predicted E3 ubiquitin 75.5 1.3 2.9E-05 51.4 1.3 34 1097-1130 423-456 (489)
229 PF12678 zf-rbx1: RING-H2 zinc 75.3 1.8 4E-05 40.1 2.0 39 1097-1136 20-71 (73)
230 PRK07003 DNA polymerase III su 74.9 42 0.00092 44.4 14.4 57 889-947 119-178 (830)
231 PF05876 Terminase_GpA: Phage 74.8 11 0.00023 48.6 9.3 49 641-694 8-56 (557)
232 KOG0802 E3 ubiquitin ligase [P 74.6 1.2 2.6E-05 56.9 0.8 51 1095-1148 290-345 (543)
233 KOG4159 Predicted E3 ubiquitin 74.2 1.5 3.3E-05 53.3 1.5 47 1095-1144 83-129 (398)
234 KOG1813 Predicted E3 ubiquitin 73.8 1.7 3.7E-05 49.9 1.7 45 1095-1142 240-284 (313)
235 KOG2660 Locus-specific chromos 73.7 1.1 2.3E-05 52.3 0.0 45 1097-1144 16-61 (331)
236 KOG4628 Predicted E3 ubiquitin 73.5 1.9 4.2E-05 51.3 2.0 48 1097-1146 230-280 (348)
237 PF06733 DEAD_2: DEAD_2; Inte 73.4 2 4.4E-05 46.3 2.1 17 805-821 116-132 (174)
238 KOG1814 Predicted E3 ubiquitin 73.4 2.3 5.1E-05 50.8 2.7 57 1087-1143 175-241 (445)
239 KOG3800 Predicted E3 ubiquitin 72.2 2 4.4E-05 49.2 1.8 49 1098-1148 2-55 (300)
240 TIGR00631 uvrb excinuclease AB 72.0 15 0.00033 48.1 9.9 66 653-784 13-79 (655)
241 KOG1805 DNA replication helica 71.8 24 0.00053 46.9 11.2 39 649-693 669-707 (1100)
242 KOG0922 DEAH-box RNA helicase 71.6 12 0.00027 47.7 8.4 46 889-938 163-216 (674)
243 PF02399 Herpes_ori_bp: Origin 71.6 13 0.00028 49.0 8.8 94 1260-1361 281-380 (824)
244 COG1643 HrpA HrpA-like helicas 68.6 36 0.00078 45.7 12.1 19 674-692 68-86 (845)
245 PHA02533 17 large terminase pr 68.5 45 0.00097 42.8 12.7 42 646-694 56-97 (534)
246 KOG0926 DEAH-box RNA helicase 67.3 20 0.00044 46.6 9.0 21 673-693 273-293 (1172)
247 PF14447 Prok-RING_4: Prokaryo 66.4 3.3 7.1E-05 36.2 1.4 44 1097-1145 8-51 (55)
248 KOG0297 TNF receptor-associate 66.0 3.1 6.8E-05 50.9 1.7 46 1097-1145 22-68 (391)
249 KOG0924 mRNA splicing factor A 65.0 12 0.00025 47.8 6.2 106 1272-1380 578-705 (1042)
250 PRK08769 DNA polymerase III su 64.7 93 0.002 37.3 13.6 47 648-694 3-49 (319)
251 PF12340 DUF3638: Protein of u 63.5 24 0.00052 40.1 8.0 43 648-694 22-64 (229)
252 KOG0337 ATP-dependent RNA heli 63.3 16 0.00035 44.4 6.7 108 762-927 92-205 (529)
253 KOG1133 Helicase of the DEAD s 62.4 2.7 5.9E-05 53.4 0.3 79 1262-1343 630-721 (821)
254 PF13401 AAA_22: AAA domain; P 62.3 5.7 0.00012 40.0 2.6 35 891-927 89-125 (131)
255 KOG1039 Predicted E3 ubiquitin 61.5 3.9 8.4E-05 49.0 1.3 45 1096-1142 161-219 (344)
256 TIGR02881 spore_V_K stage V sp 61.2 21 0.00046 41.2 7.3 19 674-692 45-63 (261)
257 COG1643 HrpA HrpA-like helicas 60.6 24 0.00052 47.3 8.4 112 1261-1375 259-390 (845)
258 KOG0828 Predicted E3 ubiquitin 60.0 3.8 8.3E-05 49.8 0.9 46 1096-1143 571-633 (636)
259 PRK14960 DNA polymerase III su 59.6 1E+02 0.0022 40.5 13.4 40 652-694 21-60 (702)
260 KOG0329 ATP-dependent RNA heli 58.0 23 0.00049 40.4 6.3 60 762-821 112-174 (387)
261 PRK14956 DNA polymerase III su 57.4 1.1E+02 0.0025 38.6 13.0 21 674-694 43-63 (484)
262 PRK14958 DNA polymerase III su 55.1 1.5E+02 0.0033 37.9 13.9 57 889-947 119-178 (509)
263 KOG3039 Uncharacterized conser 54.3 6.2 0.00014 44.2 1.3 32 1097-1128 44-75 (303)
264 PRK14949 DNA polymerase III su 54.2 1.4E+02 0.0031 40.4 13.7 40 889-930 119-161 (944)
265 KOG4739 Uncharacterized protei 54.0 5.9 0.00013 44.7 1.1 44 1098-1146 5-50 (233)
266 KOG0826 Predicted E3 ubiquitin 53.7 5.5 0.00012 46.5 0.8 46 1096-1142 300-346 (357)
267 TIGR02562 cas3_yersinia CRISPR 49.3 3.5E+02 0.0076 37.5 16.1 43 649-691 408-451 (1110)
268 TIGR03117 cas_csf4 CRISPR-asso 48.9 1.1E+02 0.0024 40.1 11.4 41 761-801 47-90 (636)
269 KOG4265 Predicted E3 ubiquitin 48.1 7.5 0.00016 46.1 0.8 46 1096-1144 290-336 (349)
270 PRK11747 dinG ATP-dependent DN 47.8 12 0.00027 49.4 2.8 42 648-689 24-67 (697)
271 PRK07994 DNA polymerase III su 47.6 2E+02 0.0043 37.9 13.4 51 1357-1415 584-636 (647)
272 PRK14961 DNA polymerase III su 47.3 2.4E+02 0.0052 34.3 13.6 21 674-694 41-61 (363)
273 TIGR03420 DnaA_homol_Hda DnaA 46.8 1.6E+02 0.0034 32.8 11.1 21 672-692 39-59 (226)
274 TIGR02880 cbbX_cfxQ probable R 46.5 38 0.00083 39.7 6.3 21 673-693 60-80 (284)
275 PF13607 Succ_CoA_lig: Succiny 46.4 79 0.0017 33.2 7.9 85 1263-1368 3-89 (138)
276 PRK14962 DNA polymerase III su 46.4 1.5E+02 0.0033 37.4 11.9 40 652-694 20-59 (472)
277 PF13177 DNA_pol3_delta2: DNA 45.8 3.9E+02 0.0085 28.5 13.4 43 654-696 2-44 (162)
278 KOG0346 RNA helicase [RNA proc 45.6 29 0.00063 42.5 5.1 60 763-822 96-159 (569)
279 KOG2932 E3 ubiquitin ligase in 44.4 11 0.00023 43.7 1.3 43 1095-1142 89-132 (389)
280 PHA02544 44 clamp loader, smal 44.3 2.7E+02 0.0058 32.8 13.1 39 650-692 25-64 (316)
281 KOG0950 DNA polymerase theta/e 42.5 27 0.00058 46.5 4.5 106 1288-1398 525-636 (1008)
282 PRK08691 DNA polymerase III su 41.9 3.2E+02 0.0069 36.3 13.8 53 1355-1415 639-694 (709)
283 KOG1645 RING-finger-containing 41.6 10 0.00022 45.6 0.5 59 1096-1156 4-68 (463)
284 COG0464 SpoVK ATPases of the A 41.3 47 0.001 42.0 6.5 44 650-693 250-298 (494)
285 KOG0951 RNA helicase BRR2, DEA 41.1 1.2E+02 0.0025 42.1 9.8 55 761-820 1187-1246(1674)
286 KOG1812 Predicted E3 ubiquitin 41.0 14 0.00031 45.2 1.7 53 1096-1148 146-207 (384)
287 KOG0950 DNA polymerase theta/e 40.8 64 0.0014 43.2 7.4 56 762-820 271-327 (1008)
288 PRK05298 excinuclease ABC subu 40.7 1.2E+02 0.0026 40.0 10.2 71 648-784 11-82 (652)
289 PRK05580 primosome assembly pr 40.4 1.5E+02 0.0032 39.4 11.0 77 1260-1339 189-266 (679)
290 KOG2817 Predicted E3 ubiquitin 39.3 16 0.00034 44.1 1.6 46 1095-1142 333-383 (394)
291 TIGR02768 TraA_Ti Ti-type conj 39.3 1.8E+02 0.0039 39.0 11.5 39 648-692 351-389 (744)
292 TIGR00595 priA primosomal prot 38.7 1.5E+02 0.0032 37.9 10.3 77 1260-1339 24-101 (505)
293 COG5243 HRD1 HRD ubiquitin lig 38.3 25 0.00054 41.8 2.9 48 1093-1143 284-344 (491)
294 KOG1571 Predicted E3 ubiquitin 37.9 14 0.00029 44.1 0.8 42 1096-1143 305-346 (355)
295 PF04641 Rtf2: Rtf2 RING-finge 37.0 22 0.00047 41.3 2.3 50 1096-1149 113-166 (260)
296 cd03418 GRX_GRXb_1_3_like Glut 36.8 1.3E+02 0.0029 27.0 7.1 57 1263-1319 1-58 (75)
297 PRK10917 ATP-dependent DNA hel 36.1 1E+02 0.0023 40.8 8.6 77 1260-1337 309-389 (681)
298 CHL00181 cbbX CbbX; Provisiona 35.5 73 0.0016 37.5 6.4 20 674-693 62-81 (287)
299 KOG3039 Uncharacterized conser 35.0 18 0.00038 40.8 1.1 38 1097-1135 222-263 (303)
300 cd03028 GRX_PICOT_like Glutare 34.7 1.2E+02 0.0026 29.0 6.7 59 1260-1319 6-70 (90)
301 TIGR00604 rad3 DNA repair heli 34.3 48 0.001 44.0 5.2 43 649-694 10-52 (705)
302 PRK14959 DNA polymerase III su 33.1 5E+02 0.011 34.1 13.6 40 652-694 22-61 (624)
303 TIGR00365 monothiol glutaredox 32.7 1.3E+02 0.0029 29.3 6.7 58 1260-1317 10-73 (97)
304 PRK14964 DNA polymerase III su 32.5 5.5E+02 0.012 32.8 13.6 38 653-693 20-57 (491)
305 PF13245 AAA_19: Part of AAA d 32.3 58 0.0013 30.4 3.9 21 675-695 14-34 (76)
306 PF13173 AAA_14: AAA domain 32.0 46 0.001 33.8 3.6 39 891-930 63-101 (128)
307 PRK14969 DNA polymerase III su 31.8 4.3E+02 0.0094 34.0 12.8 40 652-694 22-61 (527)
308 KOG1734 Predicted RING-contain 31.2 18 0.00039 41.3 0.4 52 1097-1150 225-287 (328)
309 TIGR02562 cas3_yersinia CRISPR 30.8 1.6E+02 0.0036 40.4 8.9 48 1312-1362 837-884 (1110)
310 PRK05707 DNA polymerase III su 30.3 2.9E+02 0.0063 33.3 10.4 44 649-695 3-46 (328)
311 PRK14087 dnaA chromosomal repl 30.1 2.9E+02 0.0062 34.8 10.7 21 672-692 142-162 (450)
312 KOG1815 Predicted E3 ubiquitin 29.8 34 0.00073 42.9 2.5 51 1096-1146 70-128 (444)
313 KOG0920 ATP-dependent RNA heli 29.6 1.5E+02 0.0032 40.4 8.2 110 1260-1375 412-547 (924)
314 COG0553 HepA Superfamily II DN 29.3 7.6 0.00017 52.2 -3.5 80 1264-1360 445-524 (866)
315 TIGR00643 recG ATP-dependent D 28.9 1.4E+02 0.0031 39.1 8.1 77 1260-1337 283-363 (630)
316 PLN03025 replication factor C 28.4 82 0.0018 37.5 5.3 59 889-947 99-158 (319)
317 KOG1133 Helicase of the DEAD s 27.1 2.4E+02 0.0053 36.9 9.0 31 786-821 306-336 (821)
318 COG4581 Superfamily II RNA hel 26.7 2.3E+02 0.005 39.1 9.3 81 1290-1372 449-537 (1041)
319 KOG0920 ATP-dependent RNA heli 26.0 5.9E+02 0.013 34.9 12.7 42 647-695 171-212 (924)
320 PRK11054 helD DNA helicase IV; 25.9 1.2E+02 0.0026 40.2 6.6 38 648-694 195-232 (684)
321 PHA03096 p28-like protein; Pro 25.7 32 0.0007 40.4 1.2 34 1097-1130 179-220 (284)
322 KOG0924 mRNA splicing factor A 25.6 3.8E+02 0.0081 35.2 10.1 20 674-693 374-393 (1042)
323 PF12861 zf-Apc11: Anaphase-pr 24.7 61 0.0013 31.2 2.6 44 1099-1144 35-82 (85)
324 KOG0925 mRNA splicing factor A 24.6 54 0.0012 40.8 2.7 54 886-943 156-217 (699)
325 PF14570 zf-RING_4: RING/Ubox 24.2 56 0.0012 28.1 2.0 42 1099-1142 1-46 (48)
326 COG1199 DinG Rad3-related DNA 24.0 1.7E+02 0.0036 38.6 7.4 45 647-694 13-57 (654)
327 COG1875 NYN ribonuclease and A 23.8 59 0.0013 39.3 2.8 41 649-694 228-268 (436)
328 PRK05563 DNA polymerase III su 23.7 8.9E+02 0.019 31.4 13.7 20 674-693 41-60 (559)
329 cd05563 PTS_IIB_ascorbate PTS_ 22.8 2.1E+02 0.0045 26.9 5.9 51 763-817 2-54 (86)
330 PHA00673 acetyltransferase dom 22.4 1.3E+02 0.0028 32.3 4.8 44 890-933 88-134 (154)
331 PRK14974 cell division protein 22.4 4E+02 0.0088 32.2 9.6 46 889-935 222-272 (336)
332 COG0626 MetC Cystathionine bet 22.3 1.4E+02 0.003 37.0 5.7 78 1259-1361 100-178 (396)
333 COG4646 DNA methylase [Transcr 22.2 47 0.001 40.9 1.6 32 916-947 472-503 (637)
334 cd05566 PTS_IIB_galactitol PTS 22.1 1.7E+02 0.0036 27.8 5.1 55 762-818 2-58 (89)
335 COG2247 LytB Putative cell wal 21.9 1.6E+02 0.0036 35.0 5.8 61 1259-1319 74-139 (337)
336 cd00133 PTS_IIB PTS_IIB: subun 21.4 1.8E+02 0.004 26.2 5.2 53 763-818 2-56 (84)
337 TIGR00614 recQ_fam ATP-depende 21.3 6.7E+02 0.015 31.6 11.8 78 1261-1339 51-135 (470)
338 KOG0923 mRNA splicing factor A 21.3 2.7E+02 0.0058 36.4 7.7 103 1260-1371 472-605 (902)
339 KOG4275 Predicted E3 ubiquitin 21.2 31 0.00068 39.9 -0.0 27 1097-1123 301-328 (350)
340 PRK07993 DNA polymerase III su 21.0 5.1E+02 0.011 31.3 10.1 47 649-695 2-48 (334)
341 PRK13889 conjugal transfer rel 21.0 3.7E+02 0.008 37.3 9.8 43 890-934 434-477 (988)
342 PRK00149 dnaA chromosomal repl 20.9 3.9E+02 0.0085 33.5 9.5 22 672-693 149-170 (450)
343 PRK14873 primosome assembly pr 20.9 3.6E+02 0.0077 35.8 9.3 59 1260-1319 187-247 (665)
344 KOG4367 Predicted Zn-finger pr 20.2 40 0.00086 40.7 0.5 32 1098-1129 6-37 (699)
345 cd01524 RHOD_Pyr_redox Member 20.0 1.3E+02 0.0028 28.4 3.9 37 1260-1296 50-86 (90)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-104 Score=895.07 Aligned_cols=576 Identities=41% Similarity=0.700 Sum_probs=479.0
Q ss_pred CCCCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000566 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 718 (1416)
Q Consensus 639 ~~~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 718 (1416)
+.+|.+ +..||+|||+++|+|+..+|.+.. .|||||||||+|||+|+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 556776 578999999999999999999876 8999999999999999999998631
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000566 719 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 798 (1416)
Q Consensus 719 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 798 (1416)
..+|||||||.-.+.||.+||.+|.. +.+++++|||.+
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999998865 789999999999
Q ss_pred CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccc
Q 000566 799 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 878 (1416)
Q Consensus 799 r~kd~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~ 878 (1416)
|.++..+|..||+|+|||.++.+++.++. . +.++| .+ .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~---------GfrrK-------------ng-----v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------Y---------GFRRK-------------NG-----V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------c---------ccccc-------------CC-----c
Confidence 99999999999999999999998775531 1 11111 00 1
Q ss_pred ccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchH-------
Q 000566 879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 951 (1416)
Q Consensus 879 ~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~------- 951 (1416)
+.-+++|+++.|.|||+||||+||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||..+-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 2235789999999999999999999999999999999999999999999999999999999999999985331
Q ss_pred ------------------------HHHhhhccCCCCCc-----hhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEE
Q 000566 952 ------------------------SFCSMIKVPISKNP-----VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002 (1416)
Q Consensus 952 ------------------------~F~~~~~~pi~k~~-----~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e 1002 (1416)
.|......||.+.. ..++...+.+++.+|+||||-.-.+ -+.|||+.+
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv 462 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIV 462 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccce
Confidence 22233345555432 2335678999999999999865444 267999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000566 1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1082 (1416)
Q Consensus 1003 ~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~ 1082 (1416)
.+.+--|+.+|.++|+.|...++..|..|+..|.+..+|++|+.+|.||||+++||.|+.... ...++.
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~ 531 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD 531 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999875321 011111
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhcc----CCCCCCCccccccccccchhhhhhhcccc
Q 000566 1083 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1158 (1416)
Q Consensus 1083 e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~----~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~ 1158 (1416)
+ .....+|++|.++.++++.+.|.|.||+.|+.+++.. ..-.|| .|...|+.+---.+ .....+
T Consensus 532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDlse~a-lek~~l 599 (791)
T KOG1002|consen 532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDLSEPA-LEKTDL 599 (791)
T ss_pred c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccccchh-hhhcch
Confidence 1 2235789999999999999999999999999988754 234677 58877766511100 000000
Q ss_pred ccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000566 1159 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1238 (1416)
Q Consensus 1159 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1238 (1416)
.. .. ....-.......|..|.|+++|.|.|.-+.+.
T Consensus 600 ~~-Fk----------~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r--------------------------------- 635 (791)
T KOG1002|consen 600 KG-FK----------ASSILNRINMDDWQSSTKIEALVEELYFLRER--------------------------------- 635 (791)
T ss_pred hh-hh----------hHHHhhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence 00 00 00000112334567899999999988775321
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000566 1239 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1318 (1416)
Q Consensus 1239 ~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1318 (1416)
....|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|.+.|+.|.++++++||||
T Consensus 636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 156799999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCcc
Q 000566 1319 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1398 (1416)
Q Consensus 1319 StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~ 1398 (1416)
|++|||+.|||+.|++|++|||||||+++.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+.+.+|+++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~ 775 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE 775 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CcccccCCHHHHHHhhc
Q 000566 1399 GGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1399 ~~~~~~lt~~DL~~Lf~ 1415 (1416)
.+.+||++||++||.
T Consensus 776 --Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 776 --AISKLTEEDMQFLFN 790 (791)
T ss_pred --HHHhcCHHHHHHHhc
Confidence 467999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.5e-87 Score=786.61 Aligned_cols=545 Identities=39% Similarity=0.639 Sum_probs=431.4
Q ss_pred CCCCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000566 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 718 (1416)
Q Consensus 639 ~~~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 718 (1416)
.+.|.| ++++|+|||+.|+.||+.+|... +.|||||||||||||+++|+||+..+.... ..
T Consensus 316 te~P~g-~~v~LmpHQkaal~Wl~wRE~q~--~~GGILaddmGLGKTlsmislil~qK~~~~------------~~---- 376 (901)
T KOG4439|consen 316 TETPDG-LKVELMPHQKAALRWLLWRESQP--PSGGILADDMGLGKTLSMISLILHQKAARK------------AR---- 376 (901)
T ss_pred cCCCCc-ceeecchhhhhhhhhhcccccCC--CCCcccccccccccchHHHHHHHHHHHHHH------------hh----
Confidence 344555 69999999999999999999875 499999999999999999999987542100 00
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000566 719 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 798 (1416)
Q Consensus 719 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 798 (1416)
..+...+.+||||||++|++||..|+.+.+. ...|+|++|||.+
T Consensus 377 -----------------------------------~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~-~n~LsV~~~HG~n 420 (901)
T KOG4439|consen 377 -----------------------------------EKKGESASKTLIICPASLIHQWEAEVARRLE-QNALSVYLYHGPN 420 (901)
T ss_pred -----------------------------------cccccccCCeEEeCcHHHHHHHHHHHHHHHh-hcceEEEEecCCc
Confidence 0001112259999999999999999999987 5689999999999
Q ss_pred -CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcc
Q 000566 799 -RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 877 (1416)
Q Consensus 799 -r~kd~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~ 877 (1416)
|.-.+..|.+||||||||..+.+. ..++ .+
T Consensus 421 ~r~i~~~~L~~YDvViTTY~lva~~--------~~~e-~~---------------------------------------- 451 (901)
T KOG4439|consen 421 KREISAKELRKYDVVITTYNLVANK--------PDDE-LE---------------------------------------- 451 (901)
T ss_pred cccCCHHHHhhcceEEEeeeccccC--------Cchh-hh----------------------------------------
Confidence 777889999999999999998751 0011 00
Q ss_pred cccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhh
Q 000566 878 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 957 (1416)
Q Consensus 878 ~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~ 957 (1416)
.....+||.+|.|.||||||||.|||++|+.+.|++.|++.+|||||||||||++.|+|+|++||+..||.+...|.+.+
T Consensus 452 ~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i 531 (901)
T KOG4439|consen 452 EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENI 531 (901)
T ss_pred cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhc
Confidence 00124789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCchhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHc---
Q 000566 958 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA--- 1034 (1416)
Q Consensus 958 ~~pi~k~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~--- 1034 (1416)
..+ ...+..++.-+.+++||||||+.+..++++..||++..+++.++|+..|...|+.+...++..++.++..
T Consensus 532 ~~~----s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~ 607 (901)
T KOG4439|consen 532 DNM----SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRED 607 (901)
T ss_pred cCc----cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 543 2344678888999999999999998889999999999999999999999999999988888777665432
Q ss_pred ---------------------------------CccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhch
Q 000566 1035 ---------------------------------GTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLP 1081 (1416)
Q Consensus 1035 ---------------------------------g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~ 1081 (1416)
|.......+||.+|+||||+|+||.+.+...+.... .+.....
T Consensus 608 ~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~----~~~g~~~ 683 (901)
T KOG4439|consen 608 RNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF----QMNGGDD 683 (901)
T ss_pred hccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh----hhcCcch
Confidence 111234567899999999999999766543221100 0000000
Q ss_pred -HHHHHHH--HHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhcccc
Q 000566 1082 -QERQMYL--LNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSL 1158 (1416)
Q Consensus 1082 -~e~~~~l--l~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~ 1158 (1416)
.+.+..+ +..++.. ..+.| -.-+|.
T Consensus 684 sde~~~e~~~l~el~k~--------------~~T~~--------------------~~D~~e------------------ 711 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKN--------------DETDC--------------------SDDNCE------------------ 711 (901)
T ss_pred hhhhhhhhhHHHhhhhc--------------ccccc--------------------cccccc------------------
Confidence 0001111 1111100 00111 110111
Q ss_pred ccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000566 1159 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1238 (1416)
Q Consensus 1159 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1238 (1416)
+.|..... . .-...+.+.|+...+++++.+.
T Consensus 712 -------d~p~~~~~-q------~Fe~~r~S~Ki~~~l~~le~i~----------------------------------- 742 (901)
T KOG4439|consen 712 -------DLPTAFPD-Q------AFEPDRPSCKIAMVLEILETIL----------------------------------- 742 (901)
T ss_pred -------cccccchh-h------hcccccchhHHHHHHHHHHHHh-----------------------------------
Confidence 00000000 0 0112345889999999888741
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCC-ccEEE
Q 000566 1239 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMI 1317 (1416)
Q Consensus 1239 ~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~-v~VLL 1317 (1416)
....+|+||.|||+.+|++++.+|+..|..|..++|....++|+.+|+.||...+ .+|||
T Consensus 743 -------------------~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 743 -------------------TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred -------------------hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 1257999999999999999999999999999999999999999999999998654 99999
Q ss_pred eeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCc
Q 000566 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397 (1416)
Q Consensus 1318 ~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~ 1397 (1416)
+|+.|||+||||+.|+|+|++|++|||+.|+||.+||+|+||+++|+||||++++|||+||..+|++|..++..++.+..
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred cCcccccCCHHHHHHhhcC
Q 000566 1398 TGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus 1398 ~~~~~~~lt~~DL~~Lf~~ 1416 (1416)
+ ...++||..|||-||++
T Consensus 884 t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 884 T-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred c-cccccccHHHHHHHhCC
Confidence 4 37889999999999986
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.2e-85 Score=776.59 Aligned_cols=459 Identities=33% Similarity=0.535 Sum_probs=395.2
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 641 ~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
.|.++....|++||.+||+|++.+.... -+||||||||||||+|+||++.+.+..
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~~~---------------------- 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLKGR---------------------- 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHHHh----------------------
Confidence 5666666899999999999999988755 469999999999999999999875421
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 800 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 800 (1416)
..-.+|.||+||.|++.||.+||++|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 0123789999999999999999999987 8999999999754
Q ss_pred C-----CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000566 801 K-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 875 (1416)
Q Consensus 801 k-----d~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~ 875 (1416)
+ +...-..+||+||||++..++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 3 222234899999999998642
Q ss_pred cccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHh
Q 000566 876 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 955 (1416)
Q Consensus 876 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~ 955 (1416)
++.|..+.|.++||||||+|||.++..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|.+.+.|..
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 24588899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000566 956 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1035 (1416)
Q Consensus 956 ~~~~pi~k~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g 1035 (1416)
||......+....+.+|+.+|++|+|||.|.+|.. .|||+.+.++++.|++.|+++|..+...-... ....+
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~---~n~~~ 427 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDA---LNGEG 427 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchh---hcccc
Confidence 99987777777789999999999999999999987 79999999999999999999999876432222 11222
Q ss_pred ccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccC
Q 000566 1036 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1115 (1416)
Q Consensus 1036 ~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~Cg 1115 (1416)
. .....++..+++||++|+||+|+.+.+..
T Consensus 428 ~--~~k~kL~NI~mQLRKccnHPYLF~g~ePg------------------------------------------------ 457 (971)
T KOG0385|consen 428 K--GEKTKLQNIMMQLRKCCNHPYLFDGAEPG------------------------------------------------ 457 (971)
T ss_pred c--chhhHHHHHHHHHHHhcCCccccCCCCCC------------------------------------------------
Confidence 2 13456778899999999999998653110
Q ss_pred cccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 000566 1116 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1195 (1416)
Q Consensus 1116 HifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~al 1195 (1416)
|. ....+.....+.|+..|
T Consensus 458 ----------------------------------------------------~p---------yttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 458 ----------------------------------------------------PP---------YTTDEHLVTNSGKMLVL 476 (971)
T ss_pred ----------------------------------------------------CC---------CCcchHHHhcCcceehH
Confidence 00 00111223347787777
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000566 1196 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1275 (1416)
Q Consensus 1196 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~Ld 1275 (1416)
-++|..+ +..|.||||||||+.|||
T Consensus 477 DkLL~~L-------------------------------------------------------k~~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 477 DKLLPKL-------------------------------------------------------KEQGHRVLIFSQMTRMLD 501 (971)
T ss_pred HHHHHHH-------------------------------------------------------HhCCCeEEEeHHHHHHHH
Confidence 7766653 348999999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000566 1276 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354 (1416)
Q Consensus 1276 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRv 1354 (1416)
+|+.++.-+++.|+|+||+++.++|.++|+.|+.++ +.+|+|+||+|||+|+||++|++||+||..|||....||++|+
T Consensus 502 ILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 502 ILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999965 6999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 000566 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1396 (1416)
Q Consensus 1355 hRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d 1396 (1416)
|||||+++|.||||++++||||+|+++...|.++-..+++.+
T Consensus 582 HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999998876
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.4e-82 Score=752.50 Aligned_cols=473 Identities=30% Similarity=0.497 Sum_probs=398.5
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 641 ~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
.|. .+...|+|||++||.||++..... .|||||||||||||+|+|++++..+..
T Consensus 198 vPg-~I~~~Lf~yQreGV~WL~~L~~q~---~GGILgDeMGLGKTIQiisFLaaL~~S---------------------- 251 (923)
T KOG0387|consen 198 VPG-FIWSKLFPYQREGVQWLWELYCQR---AGGILGDEMGLGKTIQIISFLAALHHS---------------------- 251 (923)
T ss_pred ccH-HHHHHhhHHHHHHHHHHHHHHhcc---CCCeecccccCccchhHHHHHHHHhhc----------------------
Confidence 344 456779999999999999987744 799999999999999999999875422
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 800 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 800 (1416)
+...+|+|||||++++.||..|+++|.+ .++|.+|||....
T Consensus 252 ------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~s~ 292 (923)
T KOG0387|consen 252 ------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTGSG 292 (923)
T ss_pred ------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCCcc
Confidence 1223689999999999999999999987 7999999998763
Q ss_pred C---------------CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccc
Q 000566 801 K---------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRK 865 (1416)
Q Consensus 801 k---------------d~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk 865 (1416)
. .........|+||||+.++..
T Consensus 293 ~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~------------------------------------------- 329 (923)
T KOG0387|consen 293 ARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ------------------------------------------- 329 (923)
T ss_pred cccccchhhhhhhhhheeeecccCcEEEEehhhhccc-------------------------------------------
Confidence 1 112223456999999998631
Q ss_pred cccCCCCCCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCC
Q 000566 866 GSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 945 (1416)
Q Consensus 866 ~~~~kk~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~ 945 (1416)
..++..+.|++||+||+|+|||++|+.+.+|+.|++.+|++||||||||++.|||+|+.|+.|+
T Consensus 330 ----------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG 393 (923)
T KOG0387|consen 330 ----------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPG 393 (923)
T ss_pred ----------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCC
Confidence 1247889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHhhhccCCCCCchhh------------HHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHH
Q 000566 946 PFAVYKSFCSMIKVPISKNPVKG------------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEE 1013 (1416)
Q Consensus 946 ~f~~~~~F~~~~~~pi~k~~~~~------------~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eE 1013 (1416)
.+++...|...|..||..+...+ ...|+.++.+++|||+|.+|.. ..||.+.+.|+.|.||+.|
T Consensus 394 ~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~Q 469 (923)
T KOG0387|consen 394 KLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKLQ 469 (923)
T ss_pred cccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHHH
Confidence 99999999999999998764322 3468999999999999999975 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhh
Q 000566 1014 RDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLE 1093 (1416)
Q Consensus 1014 r~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le 1093 (1416)
|.+|+.+..... +..++. | ..++|..+.-||++||||.|+.+.....
T Consensus 470 R~~Y~~fl~s~~--v~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~~------------------------- 516 (923)
T KOG0387|consen 470 RRLYQRFLNSSE--VNKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDEDE------------------------- 516 (923)
T ss_pred HHHHHHHhhhHH--HHHHHc-C-----CccceechHHHHhhcCCcccccCccccc-------------------------
Confidence 999998864322 222221 2 1345677778999999998874321000
Q ss_pred hhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCC
Q 000566 1094 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSD 1173 (1416)
Q Consensus 1094 ~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~ 1173 (1416)
...
T Consensus 517 -----------------------------------------------------------------------~~~------ 519 (923)
T KOG0387|consen 517 -----------------------------------------------------------------------KQG------ 519 (923)
T ss_pred -----------------------------------------------------------------------ccC------
Confidence 000
Q ss_pred cccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhc
Q 000566 1174 SKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCS 1253 (1416)
Q Consensus 1174 ~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1253 (1416)
+..++.+..+.|++.+.++|..+.
T Consensus 520 ------~D~~g~~k~sGKm~vl~~ll~~W~-------------------------------------------------- 543 (923)
T KOG0387|consen 520 ------PDYEGDPKRSGKMKVLAKLLKDWK-------------------------------------------------- 543 (923)
T ss_pred ------CCcCCChhhcchHHHHHHHHHHHh--------------------------------------------------
Confidence 001123345889999999988742
Q ss_pred ccccccCCCeEEEEcccHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000566 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASLK-DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1332 (1416)
Q Consensus 1254 ~~~i~~~~~KvIVFSq~t~~LdlLe~~L~-~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~A 1332 (1416)
..+.|+|+|||...|||+|+..|. ..|+.|+|+||.++.+.|+.+|++||++..++||||+|++||+|||||.|
T Consensus 544 -----kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 544 -----KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred -----hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 267899999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCccccc-CCHHHHH
Q 000566 1333 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTR-LTVDDLN 1411 (1416)
Q Consensus 1333 n~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~-lt~~DL~ 1411 (1416)
|+||+|||.|||....||..|+|||||||+|.||||++.+||||+||.+|--|+.+.+.++...+ +.| +...||.
T Consensus 619 nRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~----q~RfF~~~dl~ 694 (923)
T KOG0387|consen 619 NRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPE----QRRFFKGNDLH 694 (923)
T ss_pred ceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHH----HhhhcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999986543 333 7778899
Q ss_pred HhhcC
Q 000566 1412 YLFMV 1416 (1416)
Q Consensus 1412 ~Lf~~ 1416 (1416)
.||.+
T Consensus 695 dLFsl 699 (923)
T KOG0387|consen 695 DLFSL 699 (923)
T ss_pred HHhCC
Confidence 98863
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=9.7e-83 Score=784.72 Aligned_cols=601 Identities=26% Similarity=0.408 Sum_probs=480.9
Q ss_pred ccCCCcccccccccchhhhhhhhcccccccccccCCCccccccCCCCCccCCCCCCCeEEEeccCCccccchhhhhhccc
Q 000566 492 PYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTL 571 (1416)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1416)
+-...+++..+++.|+|+.+||.+|-.+++.|+. ++...|..+||.++++|=.-.-.....++.||-
T Consensus 241 tWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~ 307 (1373)
T KOG0384|consen 241 TWETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWR 307 (1373)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEec
Confidence 3456678888999999999999888889999987 578889999999999996555555699999999
Q ss_pred ccccccccccccccCCCccccccCCCCCCCCCCCCCCcCCCCCCCCchHHHHHHHHHhhccCCCCCCCCCCCCccccCCc
Q 000566 572 SMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLL 651 (1416)
Q Consensus 572 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~~~~p~~e~~~P~g~l~~~L~ 651 (1416)
+|+|..|.|.......|....+...|..+......|..+..-...+.. ++ .+. .+|..+....|+
T Consensus 308 ~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~-----~~----Kle------~qp~~~~g~~LR 372 (1373)
T KOG0384|consen 308 GLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPR-----FR----KLE------KQPEYKGGNELR 372 (1373)
T ss_pred CCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchh-----HH----Hhh------cCccccccchhh
Confidence 999999999999999998777766666554333333222222222221 11 121 234444456899
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 731 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 731 (1416)
.||++||+||+...... ..||||||||||||||+|+++......
T Consensus 373 dyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~--------------------------------- 416 (1373)
T KOG0384|consen 373 DYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS--------------------------------- 416 (1373)
T ss_pred hhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh---------------------------------
Confidence 99999999999865533 459999999999999999999664311
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--------
Q 000566 732 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------- 803 (1416)
Q Consensus 732 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~-------- 803 (1416)
..-.+|.|||||.|++.+|++|+..|. .+++++|||....+..
T Consensus 417 -------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~ 467 (1373)
T KOG0384|consen 417 -------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYH 467 (1373)
T ss_pred -------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHHHHHHHHHhee
Confidence 112478999999999999999999996 5999999998644311
Q ss_pred ---ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccccc
Q 000566 804 ---CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 880 (1416)
Q Consensus 804 ---~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~ 880 (1416)
...-+++++||||+++.++
T Consensus 468 ~~~~~~lkf~~lltTye~~LkD---------------------------------------------------------- 489 (1373)
T KOG0384|consen 468 SSNTKKLKFNALLTTYEIVLKD---------------------------------------------------------- 489 (1373)
T ss_pred cCCccccccceeehhhHHHhcc----------------------------------------------------------
Confidence 2233799999999999643
Q ss_pred ccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccC
Q 000566 881 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP 960 (1416)
Q Consensus 881 ~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~p 960 (1416)
...|..++|..+++||||++||..+..+..+..++..+|+++||||+||++.|||+|++||.|+.|..+..|...+
T Consensus 490 -k~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~--- 565 (1373)
T KOG0384|consen 490 -KAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF--- 565 (1373)
T ss_pred -HhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh---
Confidence 1348889999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCchhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Q 000566 961 ISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN 1040 (1416)
Q Consensus 961 i~k~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~ 1040 (1416)
.......+..|+.+|+|+||||.|++|.. .|||+.+.++.|+||..|+.+|..+..+.... +..|....+
T Consensus 566 -~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~----LtKG~~g~~ 635 (1373)
T KOG0384|consen 566 -DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSA----LTKGAKGST 635 (1373)
T ss_pred -cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH----HhccCCCCC
Confidence 34556778999999999999999999987 89999999999999999999999987655433 333443333
Q ss_pred HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccch
Q 000566 1041 YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1120 (1416)
Q Consensus 1041 ~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~ 1120 (1416)
.++|..++.||+||+||+|+++.+..-. ...+.
T Consensus 636 -~~lLNimmELkKccNHpyLi~gaee~~~------------~~~~~---------------------------------- 668 (1373)
T KOG0384|consen 636 -PSLLNIMMELKKCCNHPYLIKGAEEKIL------------GDFRD---------------------------------- 668 (1373)
T ss_pred -chHHHHHHHHHHhcCCccccCcHHHHHH------------Hhhhh----------------------------------
Confidence 7789999999999999999976432100 00000
Q ss_pred hhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHH
Q 000566 1121 QCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQ 1200 (1416)
Q Consensus 1121 ~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~ 1200 (1416)
|. .+.. | .....+|.|+..|-++|.
T Consensus 669 -------------~~---------~d~~-----L----------------------------~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 669 -------------KM---------RDEA-----L----------------------------QALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred -------------cc---------hHHH-----H----------------------------HHHHHhcCcEEeHHHHHH
Confidence 00 0000 0 001112445444444444
Q ss_pred hhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHH
Q 000566 1201 SLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEAS 1280 (1416)
Q Consensus 1201 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~ 1280 (1416)
+ ++..|+|||||||+++|||+|+++
T Consensus 694 r-------------------------------------------------------Lk~~GHrVLIFSQMVRmLDIL~eY 718 (1373)
T KOG0384|consen 694 R-------------------------------------------------------LKEGGHRVLIFSQMVRMLDILAEY 718 (1373)
T ss_pred H-------------------------------------------------------HhcCCceEEEhHHHHHHHHHHHHH
Confidence 4 344899999999999999999999
Q ss_pred HHhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCC
Q 000566 1281 LKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1359 (1416)
Q Consensus 1281 L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQ 1359 (1416)
|...+++|-||||++..+-|+++|+.|+.. .+-+|||+||+|||+||||++|++|||||..|||....||+.|+|||||
T Consensus 719 L~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQ 798 (1373)
T KOG0384|consen 719 LSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQ 798 (1373)
T ss_pred HHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcc
Confidence 999999999999999999999999999985 4688999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCcc---CcccccCCHHHHHHhh
Q 000566 1360 TRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET---GGQQTRLTVDDLNYLF 1414 (1416)
Q Consensus 1360 tr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~---~~~~~~lt~~DL~~Lf 1414 (1416)
++.|.|||||+++|||+.|++++.+|.-+-.+++....+ ......++-+||-.|+
T Consensus 799 kk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 799 KKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred cceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999887777654332 2345668888887654
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=8.9e-81 Score=762.05 Aligned_cols=505 Identities=31% Similarity=0.511 Sum_probs=411.6
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000566 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 725 (1416)
Q Consensus 646 l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 725 (1416)
++..||.||.+||+|+.-..+-.+ -||||||||||||+|+|+.++.....+
T Consensus 972 I~a~LRkYQqEGVnWLaFLnky~L---HGILcDDMGLGKTLQticilAsd~y~r-------------------------- 1022 (1549)
T KOG0392|consen 972 ISAKLRKYQQEGVNWLAFLNKYKL---HGILCDDMGLGKTLQTICILASDHYKR-------------------------- 1022 (1549)
T ss_pred hhHHHHHHHHhccHHHHHHHHhcc---cceeeccccccHHHHHHHHHHHHHHhh--------------------------
Confidence 467899999999999988776444 499999999999999999997643210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCC--CCCc
Q 000566 726 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR--TKDP 803 (1416)
Q Consensus 726 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r--~kd~ 803 (1416)
+.....| ...|.|||||.+|..+|+.|+.++++ -|+|+.|.|... ....
T Consensus 1023 -----~s~~~e~---------------------~~~PSLIVCPsTLtGHW~~E~~kf~p---fL~v~~yvg~p~~r~~lR 1073 (1549)
T KOG0392|consen 1023 -----RSESSEF---------------------NRLPSLIVCPSTLTGHWKSEVKKFFP---FLKVLQYVGPPAERRELR 1073 (1549)
T ss_pred -----cccchhh---------------------ccCCeEEECCchhhhHHHHHHHHhcc---hhhhhhhcCChHHHHHHH
Confidence 0011111 12468999999999999999999988 499999999864 3455
Q ss_pred ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000566 804 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 883 (1416)
Q Consensus 804 ~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~ 883 (1416)
....+++|+||+|+++++++ -
T Consensus 1074 ~q~~~~~iiVtSYDv~RnD~-----------------------------------------------------------d 1094 (1549)
T KOG0392|consen 1074 DQYKNANIIVTSYDVVRNDV-----------------------------------------------------------D 1094 (1549)
T ss_pred hhccccceEEeeHHHHHHHH-----------------------------------------------------------H
Confidence 66778999999999998754 1
Q ss_pred cccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCCC
Q 000566 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 963 (1416)
Q Consensus 884 pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~k 963 (1416)
.|.++.|.++|+||+|-|||.+++.+++++.|++.+|++||||||||++.|||+++.||+|+.++..+.|.++|.+||-.
T Consensus 1095 ~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~a 1174 (1549)
T KOG0392|consen 1095 YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILA 1174 (1549)
T ss_pred HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhh
Confidence 26788999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred Cc------------hhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000566 964 NP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1031 (1416)
Q Consensus 964 ~~------------~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~ 1031 (1416)
.. ..++..||+.+-|||+||+|++|+. +||||+++.++|+|+|.|+++|+.+....+......
T Consensus 1175 sRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~ 1249 (1549)
T KOG0392|consen 1175 SRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQ 1249 (1549)
T ss_pred hcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccCHHHHHHHHHHHHHhccccccc
Confidence 21 2236789999999999999999997 899999999999999999999999877744333333
Q ss_pred HHcCccchh--HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcc
Q 000566 1032 AAAGTVKQN--YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDA 1109 (1416)
Q Consensus 1032 ~~~g~~~~~--~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~ 1109 (1416)
.+.+....+ ..++++.|..||+.|+||.|+.+.....+. .
T Consensus 1250 ~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la----~---------------------------------- 1291 (1549)
T KOG0392|consen 1250 IDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLA----A---------------------------------- 1291 (1549)
T ss_pred cccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHH----H----------------------------------
Confidence 333322222 689999999999999999998653211110 0
Q ss_pred hhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCccccc
Q 000566 1110 VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 1189 (1416)
Q Consensus 1110 vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~s 1189 (1416)
++..|+|. +..+. ....+
T Consensus 1292 i~~~l~~~-------------------------------------~~~LH-------------------------di~hs 1309 (1549)
T KOG0392|consen 1292 IVSHLAHF-------------------------------------NSSLH-------------------------DIQHS 1309 (1549)
T ss_pred HHHHHHHh-------------------------------------hhhHH-------------------------Hhhhc
Confidence 11111110 00000 01237
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcc
Q 000566 1190 SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQ 1269 (1416)
Q Consensus 1190 sKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq 1269 (1416)
+|+.|+-++|.. |+.++....... ..+ ...++|++||+|
T Consensus 1310 pKl~AL~qLL~e----------------------CGig~~~~~~~g-~~s------------------~vsqHRiLIFcQ 1348 (1549)
T KOG0392|consen 1310 PKLSALKQLLSE----------------------CGIGNNSDSEVG-TPS------------------DVSQHRILIFCQ 1348 (1549)
T ss_pred hhHHHHHHHHHH----------------------hCCCCCCccccc-Ccc------------------hhccceeEEeee
Confidence 899999998876 222211111110 000 026799999999
Q ss_pred cHHHHHHHHHHHHhc---CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh
Q 000566 1270 WTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346 (1416)
Q Consensus 1270 ~t~~LdlLe~~L~~~---gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~ 1346 (1416)
|.+|+|++++-|-+. .+.|.|+||++++.+|++++++||+||.+.|||++|.+||+|||||.|++|||+|-.|||+.
T Consensus 1349 lK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr 1428 (1549)
T KOG0392|consen 1349 LKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1428 (1549)
T ss_pred HHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchh
Confidence 999999999999765 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1347 e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
..||++|+|||||||.|.|||||++||+||+|+.+|.-|...++.+++.+. ..+..+..++|..||.
T Consensus 1429 DLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1429 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--ccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998765 3577899999999997
No 7
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.3e-81 Score=775.75 Aligned_cols=556 Identities=46% Similarity=0.716 Sum_probs=482.4
Q ss_pred cCCCCCCCCCCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhh
Q 000566 632 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLE 711 (1416)
Q Consensus 632 ~~~p~~e~~~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~ 711 (1416)
+.++..+...|.+.+++| |+....||+..+.....++||||||+||+|||+++|++++..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~----------- 181 (674)
T KOG1001|consen 117 IILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK----------- 181 (674)
T ss_pred hhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc-----------
Confidence 444555556676666666 66667777776666667899999999999999999999988653300
Q ss_pred hccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEE
Q 000566 712 TLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 791 (1416)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~V 791 (1416)
+ .......+.||||||.+++.||..|+ ..+...+.+.+
T Consensus 182 -----~------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v 219 (674)
T KOG1001|consen 182 -----E------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSI 219 (674)
T ss_pred -----c------------------------------------hhhccccCceeEecchHHHHHHHHHH-hccCCccceEE
Confidence 0 00123457899999999999999999 67777889999
Q ss_pred EEEeCCCCCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCC
Q 000566 792 LVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 871 (1416)
Q Consensus 792 lvy~G~~r~kd~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk 871 (1416)
++||| |.++..++..||||||||.++..
T Consensus 220 ~v~~g--r~kd~~el~~~dVVltTy~il~~-------------------------------------------------- 247 (674)
T KOG1001|consen 220 YVYHG--RTKDKSELNSYDVVLTTYDILKN-------------------------------------------------- 247 (674)
T ss_pred EEecc--cccccchhcCCceEEeeHHHhhc--------------------------------------------------
Confidence 99999 88999999999999999999952
Q ss_pred CCCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchH
Q 000566 872 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 951 (1416)
Q Consensus 872 ~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~ 951 (1416)
++|..+.|.|||+||||.|+|++++.+++++.|++.+||||||||+||+++|+|++++|+..+||..+.
T Consensus 248 -----------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~ 316 (674)
T KOG1001|consen 248 -----------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQN 316 (674)
T ss_pred -----------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhH
Confidence 347789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCc-hhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000566 952 SFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1030 (1416)
Q Consensus 952 ~F~~~~~~pi~k~~-~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~ 1030 (1416)
.|...+..|+..+. ..++.+++.+|+.+|+||+|....+|+|++.|||+.+.++.++++.+|+.+|..+....+.++..
T Consensus 317 ~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~ 396 (674)
T KOG1001|consen 317 YFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN 396 (674)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH
Confidence 99999999999998 88999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcch
Q 000566 1031 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 1110 (1416)
Q Consensus 1031 ~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~v 1110 (1416)
++..|++..+|..++..++||||+|+||.++................ ...+...+..+ ..|.+|.+ .+.++
T Consensus 397 ~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~-------~~~~i~~l~~~-~~c~ic~~-~~~~~ 467 (674)
T KOG1001|consen 397 YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAAL-------IIRLIVDLSVS-HWCHICCD-LDSFF 467 (674)
T ss_pred HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchH-------HHHHHHHHhhc-cccccccc-cccce
Confidence 99999999999999999999999999998876433222111111111 11144556656 89999999 88899
Q ss_pred hcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccH
Q 000566 1111 VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSS 1190 (1416)
Q Consensus 1111 it~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ss 1190 (1416)
++.|+|.||.+|+.+.+....+. |++.|+..+....+++...+...+.+.. ..+.
T Consensus 468 it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~~------------------------~~s~ 522 (674)
T KOG1001|consen 468 ITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDLL------------------------PESS 522 (674)
T ss_pred eecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhcc------------------------chhh
Confidence 99999999999999999887766 6668999998888887655544333200 0488
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEccc
Q 000566 1191 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQW 1270 (1416)
Q Consensus 1191 Ki~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~ 1270 (1416)
|+.+++++|+.... ... .|+||||||
T Consensus 523 ki~~~~~~l~~~~~-----------------------------------------------------s~~-~kiiifsq~ 548 (674)
T KOG1001|consen 523 KIYAFLKILQAKEM-----------------------------------------------------SEQ-PKIVIFSQL 548 (674)
T ss_pred hhHHHHHHHhhccC-----------------------------------------------------CCC-CceeeehhH
Confidence 99999999883100 003 499999999
Q ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHH
Q 000566 1271 TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1350 (1416)
Q Consensus 1271 t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QA 1350 (1416)
+.++++++..|...++.+.+++|.|+..+|.+.+..|..++.++||++|++|||.||||++|+|||++||||||++|+||
T Consensus 549 ~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQa 628 (674)
T KOG1001|consen 549 IWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQA 628 (674)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCC
Q 000566 1351 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1395 (1416)
Q Consensus 1351 iGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~ 1395 (1416)
|+|+||+||+++|+|+||++++|+||||+++|++|+.++..++|+
T Consensus 629 idR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 629 IDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999875
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5.8e-79 Score=781.62 Aligned_cols=474 Identities=29% Similarity=0.484 Sum_probs=395.6
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 641 ~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
+|. .++..|+|||++||+||+..... ..|||||||||||||+|+|+++...+..
T Consensus 162 qP~-~i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPS-CIKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CCh-HhccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 344 45678999999999999987653 3689999999999999999999764210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 800 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 800 (1416)
....+|+|||||++++.||.+||.+|++ .+++++|+|....
T Consensus 216 ------------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~e 256 (1033)
T PLN03142 216 ------------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEE 256 (1033)
T ss_pred ------------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHH
Confidence 0123679999999999999999999986 6899999998643
Q ss_pred CCc-----ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000566 801 KDP-----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 875 (1416)
Q Consensus 801 kd~-----~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~ 875 (1416)
+.. ....++|||||||+++.++.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~---------------------------------------------------- 284 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEK---------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHH----------------------------------------------------
Confidence 211 12357999999999986421
Q ss_pred cccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHh
Q 000566 876 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 955 (1416)
Q Consensus 876 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~ 955 (1416)
..|..+.|++|||||||+|||..|+++++++.|++.+||+|||||++|++.|||++|+||.|+.|.+...|..
T Consensus 285 -------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~ 357 (1033)
T PLN03142 285 -------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 357 (1033)
T ss_pred -------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHH
Confidence 2366788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000566 956 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1035 (1416)
Q Consensus 956 ~~~~pi~k~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g 1035 (1416)
+|..+..........+|+.++++||+||+|.+|.. .|||+.+.+++|.||+.|+++|..+.......+ ..+
T Consensus 358 ~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g 428 (1033)
T PLN03142 358 WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAG 428 (1033)
T ss_pred HHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hcc
Confidence 99876555556678899999999999999999975 799999999999999999999999876543322 222
Q ss_pred ccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccC
Q 000566 1036 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1115 (1416)
Q Consensus 1036 ~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~Cg 1115 (1416)
. ....++..+++||++|+||+|+.+..... +..
T Consensus 429 ~---~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~~---- 461 (1033)
T PLN03142 429 G---ERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PYT---- 461 (1033)
T ss_pred c---cHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------ccc----
Confidence 2 23457888999999999998764311000 000
Q ss_pred cccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 000566 1116 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1195 (1416)
Q Consensus 1116 HifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~al 1195 (1416)
.+ ......++|+..+
T Consensus 462 --------------------------------------------------------~~---------e~lie~SgKl~lL 476 (1033)
T PLN03142 462 --------------------------------------------------------TG---------EHLVENSGKMVLL 476 (1033)
T ss_pred --------------------------------------------------------ch---------hHHhhhhhHHHHH
Confidence 00 0011236788888
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000566 1196 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1275 (1416)
Q Consensus 1196 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~Ld 1275 (1416)
.++|..+ ...+.||||||||+.+++
T Consensus 477 dkLL~~L-------------------------------------------------------k~~g~KVLIFSQft~~Ld 501 (1033)
T PLN03142 477 DKLLPKL-------------------------------------------------------KERDSRVLIFSQMTRLLD 501 (1033)
T ss_pred HHHHHHH-------------------------------------------------------HhcCCeEEeehhHHHHHH
Confidence 8877763 126789999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000566 1276 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354 (1416)
Q Consensus 1276 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRv 1354 (1416)
+|+.+|...|+.|++|+|+++..+|+++|++|++++ +..|||+||+|||+|||||.|++||+||+||||+.+.||+||+
T Consensus 502 iLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 502 ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred HHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999754 5679999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1355 hRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
|||||+++|+||||++++||||+|++++.+|..+...+++.+... ....++-++|..||.
T Consensus 582 HRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~-~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 582 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA-EQKTVNKDELLQMVR 641 (1033)
T ss_pred hhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998765432 235688889988874
No 9
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-79 Score=731.18 Aligned_cols=495 Identities=30% Similarity=0.502 Sum_probs=389.1
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
+.|.+||+.||+|+.-..+..+ .||||||||||||+|+||++++.+..
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~----------------------------- 445 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI----------------------------- 445 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc-----------------------------
Confidence 4699999999999987776554 47999999999999999999875421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 802 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd----- 802 (1416)
...+|.|||||+|++.+|.+|+++|+| .|+|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 114689999999999999999999998 899999999974331
Q ss_pred -cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000566 803 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 881 (1416)
Q Consensus 803 -~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~ 881 (1416)
...-..|||++|||..+... ++ .
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kd------------------------------------------------D 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KD------------------------------------------------D 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hH------------------------------------------------H
Confidence 11113899999999988631 11 1
Q ss_pred cCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccch-HHHHhhhccC
Q 000566 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-KSFCSMIKVP 960 (1416)
Q Consensus 882 ~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~-~~F~~~~~~p 960 (1416)
++.|.+.+|+.||.||+|++||..|.+++.+..++|+.|++|||||+||++.||++||.|+.|..|... ..+...|...
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 245778899999999999999999999999999999999999999999999999999999999999754 4455444432
Q ss_pred CC-CCc-------hhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000566 961 IS-KNP-------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYA 1032 (1416)
Q Consensus 961 i~-k~~-------~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~ 1032 (1416)
-. .++ ..++.+...+++||+|||.|.+|++ .|||+...+.+|.|+..|+.+|+.+............
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~ 671 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVS 671 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccc
Confidence 21 111 2356788999999999999999998 8999999999999999999999988655422211111
Q ss_pred HcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHH------HHHHHHhhhhccccccCCCCC
Q 000566 1033 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ------MYLLNCLEASLAICGICNDPP 1106 (1416)
Q Consensus 1033 ~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~------~~ll~~le~~~~~C~iC~d~~ 1106 (1416)
.. ....+ -..+++||++++||.|.+..+.+..++. |++.+..+.. .++...++-..
T Consensus 672 ~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~~---mak~il~e~ay~~~n~qyIfEDm~~ms---------- 733 (941)
T KOG0389|consen 672 KN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLRK---MAKRILNEPAYKKANEQYIFEDMEVMS---------- 733 (941)
T ss_pred cc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHHH---HHHHHhCchhhhhcCHHHHHHHHHhhh----------
Confidence 11 00111 3468999999999999988776554433 3333322211 11111111100
Q ss_pred CcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcc
Q 000566 1107 EDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVW 1186 (1416)
Q Consensus 1107 ~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~ 1186 (1416)
..--|.+|.+.- .+ .. .......|
T Consensus 734 -----DfelHqLc~~f~--~~-------------------------------~~------------------f~L~d~~~ 757 (941)
T KOG0389|consen 734 -----DFELHQLCCQFR--HL-------------------------------SK------------------FQLKDDLW 757 (941)
T ss_pred -----HHHHHHHHHhcC--CC-------------------------------cc------------------cccCCchh
Confidence 011244443310 00 00 00112345
Q ss_pred cccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEE
Q 000566 1187 YNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIV 1266 (1416)
Q Consensus 1187 ~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIV 1266 (1416)
..|+|++.|.++|.++ +..|+||||
T Consensus 758 mdSgK~r~L~~LLp~~-------------------------------------------------------k~~G~RVLi 782 (941)
T KOG0389|consen 758 MDSGKCRKLKELLPKI-------------------------------------------------------KKKGDRVLI 782 (941)
T ss_pred hhhhhHhHHHHHHHHH-------------------------------------------------------hhcCCEEEE
Confidence 5689999999998874 236899999
Q ss_pred EcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh
Q 000566 1267 FSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1346 (1416)
Q Consensus 1267 FSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~ 1346 (1416)
|||||.|||+|+..|...++.|+|+||++....|+.+|+.|+++.+++|+|+||+|||.||||++||+||++|..+||..
T Consensus 783 FSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 783 FSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCc
Q 000566 1347 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1397 (1416)
Q Consensus 1347 e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~ 1397 (1416)
..||.+|+||+||+|||+|||||+++||||.|+++.+.|..+-..+-++++
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999999877765544
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1e-77 Score=723.94 Aligned_cols=581 Identities=30% Similarity=0.469 Sum_probs=422.5
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 641 ~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
+-+.+|...|+.||+.||.||+......+ .||||||||||||||+|+|+++.-
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLA------------------------ 659 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLA------------------------ 659 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHH------------------------
Confidence 44567888999999999999999888664 599999999999999999997631
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 800 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 800 (1416)
| .....+|.|||||.+++-+|+-|+++|++ .|+++.|+|+.+.
T Consensus 660 ----------------C------------------eegnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kE 702 (1958)
T KOG0391|consen 660 ----------------C------------------EEGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKE 702 (1958)
T ss_pred ----------------h------------------cccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHH
Confidence 1 02345789999999999999999999998 7999999999765
Q ss_pred CC--cccc---cCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000566 801 KD--PCEL---AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 875 (1416)
Q Consensus 801 kd--~~~L---~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~ 875 (1416)
+. ...| ..|.|.||+|..+..+.
T Consensus 703 rkeKRqgW~kPnaFHVCItSYklv~qd~---------------------------------------------------- 730 (1958)
T KOG0391|consen 703 RKEKRQGWAKPNAFHVCITSYKLVFQDL---------------------------------------------------- 730 (1958)
T ss_pred HHHHhhcccCCCeeEEeehhhHHHHhHH----------------------------------------------------
Confidence 42 2233 46889999999997542
Q ss_pred cccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHh
Q 000566 876 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 955 (1416)
Q Consensus 876 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~ 955 (1416)
..+.+.+|.++||||||+|||.++++++++..+++.+|++|||||+||++.|||+|++||.|..|.+...|..
T Consensus 731 -------~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~ 803 (1958)
T KOG0391|consen 731 -------TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKP 803 (1958)
T ss_pred -------HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHH
Confidence 1256678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCC-------chhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 000566 956 MIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF 1028 (1416)
Q Consensus 956 ~~~~pi~k~-------~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~ 1028 (1416)
||.+|+..- ..+.+.+||++|++|+|||+|.+|.+ .||.+.+++++|.|+..||.+|+.+..+ ..-
T Consensus 804 wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq--~~T 876 (1958)
T KOG0391|consen 804 WFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQ--PGT 876 (1958)
T ss_pred HhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhc--cch
Confidence 999998643 23446899999999999999999987 8999999999999999999999988543 333
Q ss_pred HHHHHcCccchhHHHHHHHHHHHHHHccCcccccccC-------------ch-hhhhh----------------------
Q 000566 1029 KEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD-------------SN-SLLRS---------------------- 1072 (1416)
Q Consensus 1029 ~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~-------------~~-s~~~~---------------------- 1072 (1416)
++.+..| +++++|..||+||++||||.|+...- .. ...+.
T Consensus 877 KetLkSG----hfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~ 952 (1958)
T KOG0391|consen 877 KETLKSG----HFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSA 952 (1958)
T ss_pred hhHhhcC----chhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccc
Confidence 4444444 78899999999999999998863200 00 00000
Q ss_pred --------------------------------------------------------------------------------
Q 000566 1073 -------------------------------------------------------------------------------- 1072 (1416)
Q Consensus 1073 -------------------------------------------------------------------------------- 1072 (1416)
T Consensus 953 vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~ 1032 (1958)
T KOG0391|consen 953 VPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQ 1032 (1958)
T ss_pred ccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcH
Confidence
Q ss_pred -HHHHHh-------------------------------------------------------------------------
Q 000566 1073 -SVEMAK------------------------------------------------------------------------- 1078 (1416)
Q Consensus 1073 -~~e~a~------------------------------------------------------------------------- 1078 (1416)
.++...
T Consensus 1033 ~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gta 1112 (1958)
T KOG0391|consen 1033 SRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTA 1112 (1958)
T ss_pred hHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchh
Confidence 000000
Q ss_pred -------------hchHHHHHHHHHHhhhh------------ccccccCCCC--------CCcchhcccCc-ccchhhhh
Q 000566 1079 -------------KLPQERQMYLLNCLEAS------------LAICGICNDP--------PEDAVVSICGH-VFCNQCIC 1124 (1416)
Q Consensus 1079 -------------~l~~e~~~~ll~~le~~------------~~~C~iC~d~--------~~~~vit~CgH-ifC~~Ci~ 1124 (1416)
++..+++..+...|+.- +.+|.+=++. +...+++.|.. -.|..-|.
T Consensus 1113 t~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iId 1192 (1958)
T KOG0391|consen 1113 TLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIID 1192 (1958)
T ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHH
Confidence 00000111111111110 0112221111 11123333321 11111122
Q ss_pred hhhcc-CCCCCCCccccccccccchhh-----hhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHH
Q 000566 1125 ERLTA-DDNQCPTRNCKIRLSLSSVFS-----KATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 1198 (1416)
Q Consensus 1125 e~l~~-~~~~Cp~~~C~~~l~~~~vf~-----~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allel 1198 (1416)
.+..- ..-.-+.+.|+..-....+-. ..-+...+....... .....-..+.+...-..|...|+++|.-+
T Consensus 1193 rfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~----q~~~~r~lqFPelrLiqyDcGKLQtLAiL 1268 (1958)
T KOG0391|consen 1193 RFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQR----QTTAPRLLQFPELRLIQYDCGKLQTLAIL 1268 (1958)
T ss_pred HheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchh----hccchhhhcCcchheeecccchHHHHHHH
Confidence 21100 000111111221111110000 001111111000000 00011111122223334567788888777
Q ss_pred HHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHH
Q 000566 1199 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLE 1278 (1416)
Q Consensus 1199 L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe 1278 (1416)
|+.+ +..|+++|||+|++.|||+|+
T Consensus 1269 LqQL-------------------------------------------------------k~eghRvLIfTQMtkmLDVLe 1293 (1958)
T KOG0391|consen 1269 LQQL-------------------------------------------------------KSEGHRVLIFTQMTKMLDVLE 1293 (1958)
T ss_pred HHHH-------------------------------------------------------HhcCceEEehhHHHHHHHHHH
Confidence 7763 337899999999999999999
Q ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccC
Q 000566 1279 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358 (1416)
Q Consensus 1279 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIG 1358 (1416)
.+|..+|+.|+|+||+++.++|++++++||.|..|+++|+|+++||+|+|||.|++|||||..|||+...||.+|+||||
T Consensus 1294 qFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIG 1373 (1958)
T KOG0391|consen 1294 QFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1373 (1958)
T ss_pred HHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhcC
Q 000566 1359 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus 1359 Qtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~~ 1416 (1416)
|+|+|+|||||.+.|||+.|++....|+.+-+.++.+++. ...-++..+++.||++
T Consensus 1374 qtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf--Tt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1374 QTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF--TTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred CccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc--cHHHHhhhhHHHHhcC
Confidence 9999999999999999999999999999998888866543 3345777788888874
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.1e-76 Score=685.14 Aligned_cols=544 Identities=30% Similarity=0.473 Sum_probs=392.5
Q ss_pred CccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccc
Q 000566 644 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 723 (1416)
Q Consensus 644 g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~ 723 (1416)
.++++.|+.||+.||+|++.....+. .||||||||||||+|+|+++++.- ++.
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLa--------------E~~---------- 614 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLA--------------ETH---------- 614 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHH--------------Hhc----------
Confidence 46889999999999999999877553 499999999999999999997642 111
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 000566 724 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP 803 (1416)
Q Consensus 724 ~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~ 803 (1416)
.-.+|.|||+|+|+|.+|+.||.+|+| .++++.|.|+...+..
T Consensus 615 ----------------------------------nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRki 657 (1185)
T KOG0388|consen 615 ----------------------------------NIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKI 657 (1185)
T ss_pred ----------------------------------cCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHH
Confidence 123789999999999999999999987 8999999998644321
Q ss_pred -----------ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000566 804 -----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 872 (1416)
Q Consensus 804 -----------~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 872 (1416)
...+.|+||||||+++..+
T Consensus 658 LrKfw~rKnmY~rna~fhVviTSYQlvVtD-------------------------------------------------- 687 (1185)
T KOG0388|consen 658 LRKFWNRKNMYRRNAPFHVVITSYQLVVTD-------------------------------------------------- 687 (1185)
T ss_pred HHHhcchhhhhccCCCceEEEEeeeeeech--------------------------------------------------
Confidence 1346789999999998532
Q ss_pred CCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHH
Q 000566 873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 952 (1416)
Q Consensus 873 ~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~ 952 (1416)
...|.++.|.++||||||.||...|.+++.+...+++.|++||||||||+..|||+||+|++|..|.+..+
T Consensus 688 ---------eky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshne 758 (1185)
T KOG0388|consen 688 ---------EKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNE 758 (1185)
T ss_pred ---------HHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHH
Confidence 12478899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCC-------chhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHH
Q 000566 953 FCSMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 1025 (1416)
Q Consensus 953 F~~~~~~pi~k~-------~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~ 1025 (1416)
|.+||..-|+.. .++.+++|+.+|++|||||.|++|.. +|..+++..+.|+|+..|+.+|+.+.....
T Consensus 759 FseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS 833 (1185)
T KOG0388|consen 759 FSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSIS 833 (1185)
T ss_pred HHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhh
Confidence 999998887643 34568999999999999999999987 899999999999999999999998854332
Q ss_pred HHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhh--------hHHH-----HHhhchHH---HHHHH-
Q 000566 1026 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR--------SSVE-----MAKKLPQE---RQMYL- 1088 (1416)
Q Consensus 1026 ~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~--------~~~e-----~a~~l~~e---~~~~l- 1088 (1416)
.+....++++||++|+||.|++.....+-+. ..+. +..+++.- ....+
T Consensus 834 ---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~ 898 (1185)
T KOG0388|consen 834 ---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMF 898 (1185)
T ss_pred ---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHH
Confidence 1112247899999999999987644321110 0000 00011110 00000
Q ss_pred -HHHhhhhccccccC---CCCCCcchh------cccC-cccch-----hhhhhhhcc-C--------------------C
Q 000566 1089 -LNCLEASLAICGIC---NDPPEDAVV------SICG-HVFCN-----QCICERLTA-D--------------------D 1131 (1416)
Q Consensus 1089 -l~~le~~~~~C~iC---~d~~~~~vi------t~Cg-HifC~-----~Ci~e~l~~-~--------------------~ 1131 (1416)
.+..+....+|+.- +..+..... ...| .+|-. ..+...+-. . .
T Consensus 899 ~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~ 978 (1185)
T KOG0388|consen 899 RFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRH 978 (1185)
T ss_pred HHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhh
Confidence 00111111122221 111100000 0011 11100 000000000 0 0
Q ss_pred CCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccc---ccCCcCCCcccccHHHHHHHHHHHhhcCCCCC
Q 000566 1132 NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL---VEAPSCEGVWYNSSKIKAALEVLQSLAKPRGN 1208 (1416)
Q Consensus 1132 ~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~---~e~~~~~~~~~~ssKi~allelL~~l~~~~~~ 1208 (1416)
..|-.++..+.. .|-...++.+ +++...-...+ .-.+........|.|+..|-++|.+
T Consensus 979 ~y~y~P~v~apP---------vLI~~ead~P---eId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~k------- 1039 (1185)
T KOG0388|consen 979 VYCYSPVVAAPP---------VLISNEADLP---EIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPK------- 1039 (1185)
T ss_pred eeeeccccCCCC---------eeeecccCCC---CCCccccCcccccceecCcHHhhhccccceeeHHHHHHH-------
Confidence 011111111100 0001111100 00000000000 0001111122234555555544444
Q ss_pred cccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcE
Q 000566 1209 TVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQY 1288 (1416)
Q Consensus 1209 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~ 1288 (1416)
++..++++|+|.|.|.|+++|+++|...|++|
T Consensus 1040 ------------------------------------------------LkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~y 1071 (1185)
T KOG0388|consen 1040 ------------------------------------------------LKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTY 1071 (1185)
T ss_pred ------------------------------------------------hhcCCceEEehhHHHHHHHHHHHHHHhhccce
Confidence 34589999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000566 1289 RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRL 1368 (1416)
Q Consensus 1289 ~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrL 1368 (1416)
+|+||+....+|..+|.+|+. ++++|+|+||+|||+|+|||+|++|||||..|||+...||++|+||+||||+|+||||
T Consensus 1072 lRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl 1150 (1185)
T KOG0388|consen 1072 LRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRL 1150 (1185)
T ss_pred EEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeee
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHhCCCcc
Q 000566 1369 TVKNTVEDRILALQQKKREMVASAFGEDET 1398 (1416)
Q Consensus 1369 i~kdTIEErIl~lq~~K~~l~~~~~g~d~~ 1398 (1416)
++++||||+|+++...|.+....++.+...
T Consensus 1151 ~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~ 1180 (1185)
T KOG0388|consen 1151 ITRGTVEEKVLERANQKDEVQQMVMHGNIF 1180 (1185)
T ss_pred cccccHHHHHHHHhhhHHHHHHHHHcCCcc
Confidence 999999999999999999999888865443
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.5e-69 Score=651.48 Aligned_cols=461 Identities=31% Similarity=0.492 Sum_probs=382.4
Q ss_pred CCCCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000566 639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 718 (1416)
Q Consensus 639 ~~~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 718 (1416)
+.+|..+....|++||+.||.||+......+ -||||||||||||+++|+||++... .
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE--------------~------ 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLME--------------H------ 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHH--------------H------
Confidence 4567777778999999999999999887664 4999999999999999999987421 0
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000566 719 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 798 (1416)
Q Consensus 719 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 798 (1416)
....+|.|||||.++|.+|..|+.+|.+ .+..++|.|..
T Consensus 441 --------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp 479 (1157)
T KOG0386|consen 441 --------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTP 479 (1157)
T ss_pred --------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCH
Confidence 1123789999999999999999999976 79999999987
Q ss_pred CCCC----cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCC
Q 000566 799 RTKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 874 (1416)
Q Consensus 799 r~kd----~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d 874 (1416)
..+. .-...+|+|++|||+-+..+
T Consensus 480 ~~R~~l~~qir~gKFnVLlTtyEyiikd---------------------------------------------------- 507 (1157)
T KOG0386|consen 480 QQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------------------------------------------- 507 (1157)
T ss_pred HHHhhHHHHHhcccceeeeeeHHHhcCC----------------------------------------------------
Confidence 5442 12237999999999888531
Q ss_pred CcccccccCcccccCccEEEEcCccccCChhhHHHHHHH-hcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHH
Q 000566 875 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 953 (1416)
Q Consensus 875 ~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~-~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F 953 (1416)
+..|.+|.|..+||||+|++||..++++..+. ...+.+|++|||||+||++.|||++|+||-|..|.+...|
T Consensus 508 -------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 508 -------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred -------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 23488999999999999999999999999887 6689999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCch----------hhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 000566 954 CSMIKVPISKNPV----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 1023 (1416)
Q Consensus 954 ~~~~~~pi~k~~~----------~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~ 1023 (1416)
..||..|+..... -.+.+|+.+|+||+|||.|++|.. .||.+++.+++|+||.-|+.+|..+...
T Consensus 581 eqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred HHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhC
Confidence 9999999976542 126899999999999999999987 8999999999999999999999987533
Q ss_pred HHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCC
Q 000566 1024 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 1103 (1416)
Q Consensus 1024 s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~ 1103 (1416)
-+-.. +....+..+..+...++.||++|+||++....+.. |..+.
T Consensus 656 g~l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~~~~~ 700 (1157)
T KOG0386|consen 656 GQLLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------YTLHY 700 (1157)
T ss_pred CCCCc----CchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------ccccc
Confidence 21110 11112344556778899999999999886422100 00000
Q ss_pred CCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCC
Q 000566 1104 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 1183 (1416)
Q Consensus 1104 d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~ 1183 (1416)
++ .
T Consensus 701 ~~-----------------------------------------------------------------------------~ 703 (1157)
T KOG0386|consen 701 DI-----------------------------------------------------------------------------K 703 (1157)
T ss_pred Ch-----------------------------------------------------------------------------h
Confidence 00 0
Q ss_pred CcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCe
Q 000566 1184 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1263 (1416)
Q Consensus 1184 ~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~K 1263 (1416)
..+..++|++.+-.+|.+ ++..+++
T Consensus 704 dL~R~sGKfELLDRiLPK-------------------------------------------------------LkatgHR 728 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPK-------------------------------------------------------LKATGHR 728 (1157)
T ss_pred HHHHhccHHHHHHhhhHH-------------------------------------------------------HHhcCcc
Confidence 111225566555554444 3447899
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCC
Q 000566 1264 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1342 (1416)
Q Consensus 1264 vIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~W 1342 (1416)
|+.|+|.|+++++++.+|.-.+++|+|+||+++.++|..+++.||.. ..+++||+|++|||+|||||.|++||+||..|
T Consensus 729 VLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw 808 (1157)
T KOG0386|consen 729 VLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW 808 (1157)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC
Confidence 99999999999999999999999999999999999999999999984 46899999999999999999999999999999
Q ss_pred CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Q 000566 1343 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1394 (1416)
Q Consensus 1343 NPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g 1394 (1416)
||..+.||.+|+|||||+++|.|.||++-+++||.|++.+..|..+...++.
T Consensus 809 np~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 809 NPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred CchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 9999999999999999999999999999999999999999999887766653
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=4.5e-66 Score=635.52 Aligned_cols=494 Identities=27% Similarity=0.380 Sum_probs=386.1
Q ss_pred CCCccccCCchHHHHHHHHHHHhhccCC---CCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000566 642 PDGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 718 (1416)
Q Consensus 642 P~g~l~~~L~phQk~al~wMl~~E~~~~---~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 718 (1416)
++..++..|+|||++|+.||.+...+.. ...|+|+||+||+|||+++|++|......
T Consensus 231 ~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-------------------- 290 (776)
T KOG0390|consen 231 IDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-------------------- 290 (776)
T ss_pred ecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh--------------------
Confidence 3445677899999999999998777652 45899999999999999999999764321
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000566 719 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 798 (1416)
Q Consensus 719 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 798 (1416)
.++. .+.....|||||++|+.+|++|+.||... ..+..+.+.|..
T Consensus 291 --------------~P~~--------------------~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~ 335 (776)
T KOG0390|consen 291 --------------FPQA--------------------KPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTK 335 (776)
T ss_pred --------------CcCc--------------------cccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeeccc
Confidence 1100 01234579999999999999999999863 478888888877
Q ss_pred CCC---------CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccC
Q 000566 799 RTK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQ 869 (1416)
Q Consensus 799 r~k---------d~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~ 869 (1416)
... .....-.+-|.|.+|++++..+
T Consensus 336 ~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~---------------------------------------------- 369 (776)
T KOG0390|consen 336 KSSWIKLKSILFLGYKQFTTPVLIISYETASDYC---------------------------------------------- 369 (776)
T ss_pred chhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH----------------------------------------------
Confidence 641 0111123458888998886322
Q ss_pred CCCCCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccc
Q 000566 870 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 949 (1416)
Q Consensus 870 kk~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~ 949 (1416)
..+....+++||+||+|+.||..+.+++++..|+..+|++|||||+||++.|+|++|.|.+|+.++.
T Consensus 370 -------------~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs 436 (776)
T KOG0390|consen 370 -------------RKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGS 436 (776)
T ss_pred -------------HHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccc
Confidence 1145567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccCCCCCch-----------hhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000566 950 YKSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1018 (1416)
Q Consensus 950 ~~~F~~~~~~pi~k~~~-----------~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~ 1018 (1416)
...|...+..|+.+... ...+.|+.++..|++||+-..+.+ .||++.+.++.+.+++.|+.+|.
T Consensus 437 ~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 437 ISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred hHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHH
Confidence 99999999998876432 226779999999999999966655 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccc
Q 000566 1019 QLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAI 1098 (1416)
Q Consensus 1019 ~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~ 1098 (1416)
.+.... .. ..+ .| + .|..++.|.++|+||.|+...+
T Consensus 512 ~l~~~~-~~-~~~--~~-----~--~l~~~~~L~k~cnhP~L~~~~~--------------------------------- 547 (776)
T KOG0390|consen 512 KLLDSM-KM-RTL--KG-----Y--ALELITKLKKLCNHPSLLLLCE--------------------------------- 547 (776)
T ss_pred HHHHHH-Hh-hhh--hc-----c--hhhHHHHHHHHhcCHHhhcccc---------------------------------
Confidence 986542 11 111 01 1 5777889999999998874110
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccccc
Q 000566 1099 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE 1178 (1416)
Q Consensus 1099 C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e 1178 (1416)
.|.. ++.. +....+. + ....
T Consensus 548 --~~~~----------------------------------e~~~------~~~~~~~----~-------------~~~~- 567 (776)
T KOG0390|consen 548 --KTEK----------------------------------EKAF------KNPALLL----D-------------PGKL- 567 (776)
T ss_pred --cccc----------------------------------cccc------cChHhhh----c-------------cccc-
Confidence 0000 0000 0000000 0 0000
Q ss_pred CCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccc
Q 000566 1179 APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIK 1258 (1416)
Q Consensus 1179 ~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~ 1258 (1416)
.........+.|+..|+.+|.... .
T Consensus 568 -~~~~~~~~ks~kl~~L~~ll~~~~------------------------------------------------------e 592 (776)
T KOG0390|consen 568 -KLDAGDGSKSGKLLVLVFLLEVIR------------------------------------------------------E 592 (776)
T ss_pred -ccccccchhhhHHHHHHHHHHHHh------------------------------------------------------h
Confidence 000011123677777777764421 0
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEEEE
Q 000566 1259 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1259 ~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
....|+++.++++.++++++..++-+|+.++++||+|+..+|+.+|+.||+.+.. +|||+|++|||+||||+.|+|||+
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 1457899999999999999999999999999999999999999999999997665 999999999999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1338 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1338 ~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
|||.|||+++.|||+||||.||+|+|+||||++.||+||+|+++|..|..+-..+|+..+... .....++++.||.
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~--~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVE--KHFFTEDLKTLFD 748 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccc--cccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998766422 2233378888875
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.2e-61 Score=578.01 Aligned_cols=578 Identities=25% Similarity=0.321 Sum_probs=381.8
Q ss_pred ccCCchHHHHHHHHHHHhhc------cCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 647 AVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~------~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
...|.|||..||.||+..-- ....+.||||||=||||||+|.|+++.....-
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c---------------------- 723 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC---------------------- 723 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh----------------------
Confidence 44699999999999997332 22356899999999999999999998553210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC---CCCcEEEEEeCC
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS---KGSLSVLVYHGS 797 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~---~~~L~Vlvy~G~ 797 (1416)
. ..-.++.|||||.+++.||.+|+.+|... ...|.|..+...
T Consensus 724 -----------------~------------------klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------D------------------KLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------h------------------ccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 0 01135689999999999999999999873 124566655555
Q ss_pred CCCCCcc-cc----cCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000566 798 SRTKDPC-EL----AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 872 (1416)
Q Consensus 798 ~r~kd~~-~L----~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 872 (1416)
++..+.. .| ..-.|.|+.|+.++...... ..+.+|
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr-------------------------~vk~rk--------------- 808 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGR-------------------------NVKSRK--------------- 808 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhccc-------------------------chhhhH---------------
Confidence 5433221 12 24579999999997532100 000000
Q ss_pred CCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHH
Q 000566 873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 952 (1416)
Q Consensus 873 ~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~ 952 (1416)
..+.....|..-+.++||+||||.|||..+.+++|+..+++++|++|||||+||+|.|+|.++.|++++.++...+
T Consensus 809 ----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~E 884 (1567)
T KOG1015|consen 809 ----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKE 884 (1567)
T ss_pred ----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHH
Confidence 1122234577778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCchh------------hHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHH
Q 000566 953 FCSMIKVPISKNPVK------------GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1020 (1416)
Q Consensus 953 F~~~~~~pi~k~~~~------------~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L 1020 (1416)
|..+|.+||.++... +-+.|..+|+.++-|+-..-+.. .|||+++.++.+.+|+.|+.+|+.+
T Consensus 885 frNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~y 959 (1567)
T KOG1015|consen 885 FRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYY 959 (1567)
T ss_pred HHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHH
Confidence 999999999887422 23558889999998887766654 7999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcC-ccc---hhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhc
Q 000566 1021 EINSRDQFKEYAAAG-TVK---QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASL 1096 (1416)
Q Consensus 1021 ~~~s~~~~~~~~~~g-~~~---~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~ 1096 (1416)
... . ...| ... ....++|+...-|+++..||..+.-.... .+ .+.+. ....
T Consensus 960 L~h-~------~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~------~e-nkR~~-----------sedd 1014 (1567)
T KOG1015|consen 960 LDH-L------TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSIS------KE-NKRYF-----------SEDD 1014 (1567)
T ss_pred Hhh-c------cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhh------hh-hcccc-----------cccc
Confidence 541 1 1111 111 24456788888899999999754311100 00 00000 0000
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhcc-CCCCCCCccccccccccchhhhhh---hccccccCCCCCC----CC
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTA-DDNQCPTRNCKIRLSLSSVFSKAT---LNNSLSQRQPGQE----IP 1168 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~-~~~~Cp~~~C~~~l~~~~vf~~~~---l~~~~~~~~~~~~----i~ 1168 (1416)
..-.||.+..++..-.. ....|..--...+.. +.+.--. .......+-.+..... ......+...... +-
T Consensus 1015 m~~fi~D~sde~e~s~~-s~d~~~~~ks~~~s~~Desss~~-~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll 1092 (1567)
T KOG1015|consen 1015 MDEFIADDSDETEMSLS-SDDYTKKKKSGKKSKKDESSSGS-GSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLL 1092 (1567)
T ss_pred hhccccCCCcccccccc-ccchhhccccccccccccccccc-ccCCchhhhhhhhhhccccccCcccccCCCcchHHHHh
Confidence 11122222211111000 000000000000000 0000000 0000000000000000 0000000000000 00
Q ss_pred CCCCCcccccC------------CcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCC
Q 000566 1169 TDYSDSKLVEA------------PSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGD 1236 (1416)
Q Consensus 1169 ~~~s~~e~~e~------------~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1236 (1416)
.+..+.+..+. ........-|+|+-.|+++|+.
T Consensus 1093 ~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~m----------------------------------- 1137 (1567)
T KOG1015|consen 1093 EDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRM----------------------------------- 1137 (1567)
T ss_pred hcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHH-----------------------------------
Confidence 00000000000 0000011112333333333322
Q ss_pred cccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHh----------------------cCCcEEecCCC
Q 000566 1237 TLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD----------------------SSIQYRRLDGT 1294 (1416)
Q Consensus 1237 ~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~----------------------~gI~~~rldGs 1294 (1416)
...-|.|+|||||....||+|+.+|.. .|..|.||||+
T Consensus 1138 --------------------ceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs 1197 (1567)
T KOG1015|consen 1138 --------------------CEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS 1197 (1567)
T ss_pred --------------------HHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc
Confidence 123589999999999999999999963 26789999999
Q ss_pred CCHHHHHHHHHHHhcCCC--ccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1295 MSVFARDKAVKDFNTLPE--VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1295 ms~~qR~~aI~~Fn~d~~--v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+...+|+++.+.||+..+ .+.+|+||+||++|+||.+|||||++|-.|||....|+|-||+|+||++||+||||++.+
T Consensus 1198 t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1198 TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 999999999999998544 667999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1373 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1373 TIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
|+|++||++|-.|+.++..++++... ....+..||..||.
T Consensus 1278 TmEeKIYkRQVTKqsls~RVVDeqQv---~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1278 TMEEKIYKRQVTKQSLSFRVVDEQQV---ERHYTMNELTELYT 1317 (1567)
T ss_pred cHHHHHHHHHHhHhhhhhhhhhHHHH---HHHhhHhhhHHHhh
Confidence 99999999999999999999976432 34578888888874
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-61 Score=629.57 Aligned_cols=495 Identities=38% Similarity=0.580 Sum_probs=397.0
Q ss_pred CccccCCchHHHHHHHHHHH-hhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 000566 644 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722 (1416)
Q Consensus 644 g~l~~~L~phQk~al~wMl~-~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 722 (1416)
..+...|++||.+|+.||.. ... ...||||||+||||||+++|+++......
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------ 385 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------ 385 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc------------------------
Confidence 34556799999999999994 333 23799999999999999999999752211
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC-
Q 000566 723 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 800 (1416)
Q Consensus 723 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~-Vlvy~G~~r~- 800 (1416)
...+.++.|||||.+++.+|.+|+.+|.+ .++ +.+++|....
T Consensus 386 ---------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 386 ---------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred ---------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 00113579999999999999999998876 677 9999998862
Q ss_pred ----CCcccccC------CCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCC
Q 000566 801 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 870 (1416)
Q Consensus 801 ----kd~~~L~~------~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~k 870 (1416)
.....+.+ +|+++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 22222333 899999999997421
Q ss_pred CCCCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhh-hccCCCcc-
Q 000566 871 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 948 (1416)
Q Consensus 871 k~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~-FL~p~~f~- 948 (1416)
.....+..+.|+++|+||||+|||..+..+++++.+++.+||+|||||++|++.|||+++. |+.|..+.
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0013477889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred chHHHHhhhccCCCCCch--------hhHHHHHHHHhHhhhhhcccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000566 949 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1018 (1416)
Q Consensus 949 ~~~~F~~~~~~pi~k~~~--------~~~~~L~~lL~~~mLRRtK~d--Vldg~pii~LPpk~e~vv~v~lS~eEr~~Y~ 1018 (1416)
....|..+|..|+..... ....+|+.++.+|++||+|.+ ++. .||++.+.++.+.++.+|+.+|.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~ 608 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYE 608 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHH
Confidence 569999999998876543 334558899999999999999 654 89999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHcCcc--ch--hHHHHHHHHHHHHHHccCcccccccC-chhhhhhHHHHHhhchHHHHHHHHH
Q 000566 1019 QLEI---NSRDQFKEYAAAGTV--KQ--NYVNILLMLLRLRQACDHPLLVKGFD-SNSLLRSSVEMAKKLPQERQMYLLN 1090 (1416)
Q Consensus 1019 ~L~~---~s~~~~~~~~~~g~~--~~--~~~~IL~lLlrLRq~c~HP~Lv~~~~-~~s~~~~~~e~a~~l~~e~~~~ll~ 1090 (1416)
.+.. .....+......+.. .. ...+++..+++||++|+||.++.... ...
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~---------------------- 666 (866)
T COG0553 609 ALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF---------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc----------------------
Confidence 9887 444444443333211 11 36788999999999999998875321 000
Q ss_pred HhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCC
Q 000566 1091 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 1170 (1416)
Q Consensus 1091 ~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~ 1170 (1416)
+..+.....+.....
T Consensus 667 --------~~~~~~~~~~~~~~~--------------------------------------------------------- 681 (866)
T COG0553 667 --------DRIVLLLREDKDFDY--------------------------------------------------------- 681 (866)
T ss_pred --------chhhhhhhccccccc---------------------------------------------------------
Confidence 000000000000000
Q ss_pred CCCcccccCCcCCCccccc-HHHHHHHHHH-HhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHH
Q 000566 1171 YSDSKLVEAPSCEGVWYNS-SKIKAALEVL-QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 1248 (1416)
Q Consensus 1171 ~s~~e~~e~~~~~~~~~~s-sKi~allelL-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 1248 (1416)
........+ .|+..+.++| ..+
T Consensus 682 ----------~~~~~~~~s~~k~~~l~~ll~~~~---------------------------------------------- 705 (866)
T COG0553 682 ----------LKKPLIQLSKGKLQALDELLLDKL---------------------------------------------- 705 (866)
T ss_pred ----------ccchhhhccchHHHHHHHHHHHHH----------------------------------------------
Confidence 000111234 6777777777 332
Q ss_pred HhhhcccccccCCC--eEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000566 1249 AAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1326 (1416)
Q Consensus 1249 ~~~~~~~~i~~~~~--KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~G 1326 (1416)
...+. |+|||+||+.++++|+..|+..++.|++++|+++..+|+.++++|+++++..|+++|++|||.|
T Consensus 706 ---------~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~g 776 (866)
T COG0553 706 ---------LEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLG 776 (866)
T ss_pred ---------HhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccc
Confidence 11455 9999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCC
Q 000566 1327 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT 1406 (1416)
Q Consensus 1327 LNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt 1406 (1416)
|||+.|++||++||||||+++.||++|+|||||+++|.||||++++|+||+|+++|..|+.+...+++. ........++
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~ 855 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLS 855 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 2235678899
Q ss_pred HHHHHHhhc
Q 000566 1407 VDDLNYLFM 1415 (1416)
Q Consensus 1407 ~~DL~~Lf~ 1415 (1416)
.+++..||.
T Consensus 856 ~~~~~~l~~ 864 (866)
T COG0553 856 IEDLLDLFS 864 (866)
T ss_pred HHHHHHHhc
Confidence 999999986
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=7.9e-54 Score=502.52 Aligned_cols=578 Identities=25% Similarity=0.357 Sum_probs=382.8
Q ss_pred ccCCchHHHHHHHHHHHhhccC------CCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000566 647 AVPLLRHQRIALSWMVQKETSS------LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 720 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~~~------~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 720 (1416)
..-|.|||+-|+.||....-.+ .-+.|+|||+.||||||+|.|+++-...
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~difl------------------------ 307 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFL------------------------ 307 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHh------------------------
Confidence 3348999999999997643221 1358999999999999999999873321
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC--------CCCcEEE
Q 000566 721 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSVL 792 (1416)
Q Consensus 721 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~--------~~~L~Vl 792 (1416)
+..+++.+|+|+|-.+|.+|-.|+..|++. +..+.|+
T Consensus 308 -----------------------------------RhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf 352 (1387)
T KOG1016|consen 308 -----------------------------------RHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVF 352 (1387)
T ss_pred -----------------------------------hcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEE
Confidence 112356799999999999999999999874 2245666
Q ss_pred EEeCCCCCCC-----cccc-cCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCcccc
Q 000566 793 VYHGSSRTKD-----PCEL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKG 866 (1416)
Q Consensus 793 vy~G~~r~kd-----~~~L-~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~ 866 (1416)
++.....+-+ ...| ..-.|+|+.|++++-...+. .+. ++| +.+..++.
T Consensus 353 ~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~------------~~~------------~gr--pkkt~kr~ 406 (1387)
T KOG1016|consen 353 LLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKT------------LPK------------KGR--PKKTLKRI 406 (1387)
T ss_pred EecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhc------------ccc------------cCC--cccccccc
Confidence 6654433221 1111 35569999999997432110 000 000 00000000
Q ss_pred ccCCCCCC-----CcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhh
Q 000566 867 SKQKKGPD-----GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 941 (1416)
Q Consensus 867 ~~~kk~~d-----~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~F 941 (1416)
...--+.+ ..+...+...|.+-+.|+||+||+|+|||.....+.++..+++++|+.|||-|+||++-|.|.++.|
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 00000000 1123345566888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchHHHHhhhccCCCCCch------------hhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecC
Q 000566 942 LRYDPFAVYKSFCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDF 1009 (1416)
Q Consensus 942 L~p~~f~~~~~F~~~~~~pi~k~~~------------~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~l 1009 (1416)
++|..+++.++|+.+|++||..+.- .+...|+.+|..|+-||+..-+. +.||.+.+.++.|.+
T Consensus 487 VRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 487 VRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVRK 561 (1387)
T ss_pred ccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEeH
Confidence 9999999999999999999987631 12457899999999999976554 479999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhh--chHHHHHH
Q 000566 1010 TDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKK--LPQERQMY 1087 (1416)
Q Consensus 1010 S~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~--l~~e~~~~ 1087 (1416)
|..||++|+.+.-..... ....+. ...|-|.+.---.++.+||.++-. ..++ ...+....
T Consensus 562 s~iQR~LY~~Fm~d~~r~---~~~~~~---~~~NPLkAF~vCcKIWNHPDVLY~------------~l~k~~~a~e~dl~ 623 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKRE---IAANND---AVFNPLKAFSVCCKIWNHPDVLYR------------LLEKKKRAEEDDLR 623 (1387)
T ss_pred HHHHHHHHHHHHHHHHHh---hccccc---cccChHHHHHHHHHhcCChHHHHH------------HHHHhhhhhhhhhh
Confidence 999999999875433222 221221 112345555555667799965421 1111 11111111
Q ss_pred HHHH-hhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCC
Q 000566 1088 LLNC-LEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE 1166 (1416)
Q Consensus 1088 ll~~-le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~ 1166 (1416)
+... .....+.|+--+.++.++-. .++ +-..+.+....-. .....
T Consensus 624 vee~~~ag~~~~~~P~~~~~~~~s~------------------------------~la--Ss~~k~~n~t~kp--~~s~~ 669 (1387)
T KOG1016|consen 624 VEEMKFAGLQQQQSPFNSIPSNPST------------------------------PLA--SSTSKSANKTKKP--RGSKK 669 (1387)
T ss_pred HHHHhhhcccccCCCCCCCCCCCCC------------------------------ccc--chhhhhhcccCCc--ccCcC
Confidence 1000 01111223222222111100 000 0000000000000 00000
Q ss_pred CCCC-CCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhh
Q 000566 1167 IPTD-YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDEN 1245 (1416)
Q Consensus 1167 i~~~-~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 1245 (1416)
.|.. ..+.+++. |. .+..+++...... .+... . .. .-.+..+.+
T Consensus 670 ~p~f~ee~~e~~~--------y~----~w~~el~~nYq~g--------vLen~----p------k~---V~~~~~~de-- 714 (1387)
T KOG1016|consen 670 APKFDEEDEEVEK--------YS----DWTFELFENYQEG--------VLENG----P------KI---VISLEILDE-- 714 (1387)
T ss_pred CCCcccccccccc--------hh----hHHHHHHhhhhcc--------cccCC----C------ce---EEEEeeecc--
Confidence 0100 00111110 00 2333444432100 00000 0 00 001111110
Q ss_pred HHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcC------------------CcEEecCCCCCHHHHHHHHHHH
Q 000566 1246 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS------------------IQYRRLDGTMSVFARDKAVKDF 1307 (1416)
Q Consensus 1246 ~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~g------------------I~~~rldGsms~~qR~~aI~~F 1307 (1416)
-..-++|+|||||....|++|+..|.+.. +.|++++|.++..+|+++|++|
T Consensus 715 -----------s~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqf 783 (1387)
T KOG1016|consen 715 -----------STQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQF 783 (1387)
T ss_pred -----------ccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhc
Confidence 12268999999999999999999998652 4589999999999999999999
Q ss_pred hcCCCcc-EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000566 1308 NTLPEVS-VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1386 (1416)
Q Consensus 1308 n~d~~v~-VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~ 1386 (1416)
|..++.. .+|+|+++|..|+||..|+++|++|..|||....||++||+|+||+|+.+||||++.+|+|.+|+++|-.|+
T Consensus 784 N~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKq 863 (1387)
T KOG1016|consen 784 NSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQ 863 (1387)
T ss_pred cCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhc
Confidence 9988877 788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1387 EMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1387 ~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
-|.+.++++.. -...++..||..|.+
T Consensus 864 GmsdRvVDd~n---p~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 864 GMSDRVVDDAN---PDANISQKELENLLM 889 (1387)
T ss_pred cchhhhhcccC---ccccccHHHHHHHhh
Confidence 99999997653 356788889888865
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-52 Score=477.30 Aligned_cols=418 Identities=29% Similarity=0.363 Sum_probs=319.8
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000566 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 725 (1416)
Q Consensus 646 l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 725 (1416)
+-..|+|||++||.|.+++. +..|||||||||||+||||+..+.+.+
T Consensus 195 Lvs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyraE--------------------------- 241 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRAE--------------------------- 241 (689)
T ss_pred HHHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhhc---------------------------
Confidence 34469999999999999642 236999999999999999998775532
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeC-CCCCCCcc
Q 000566 726 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-SSRTKDPC 804 (1416)
Q Consensus 726 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G-~~r~kd~~ 804 (1416)
+|.|||||+++...|++++.+|++.-.. +.+..+ ..+..+.
T Consensus 242 -----------------------------------wplliVcPAsvrftWa~al~r~lps~~p--i~vv~~~~D~~~~~- 283 (689)
T KOG1000|consen 242 -----------------------------------WPLLIVCPASVRFTWAKALNRFLPSIHP--IFVVDKSSDPLPDV- 283 (689)
T ss_pred -----------------------------------CcEEEEecHHHhHHHHHHHHHhcccccc--eEEEecccCCcccc-
Confidence 4689999999999999999999984332 433333 3322211
Q ss_pred cccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCc
Q 000566 805 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 884 (1416)
Q Consensus 805 ~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~p 884 (1416)
-..-.|+|++|+.+.... ..
T Consensus 284 -~t~~~v~ivSye~ls~l~-----------------------------------------------------------~~ 303 (689)
T KOG1000|consen 284 -CTSNTVAIVSYEQLSLLH-----------------------------------------------------------DI 303 (689)
T ss_pred -ccCCeEEEEEHHHHHHHH-----------------------------------------------------------HH
Confidence 122359999999986421 11
Q ss_pred ccccCccEEEEcCccccCChhhHHHHHHHhc--ccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCC
Q 000566 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 962 (1416)
Q Consensus 885 L~~i~W~rVIlDEAH~IKN~~S~~skal~~L--~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~ 962 (1416)
|..-.|..||+||+|++|+.++++.+++..| .+++.++|||||-..++.|||.+++.+.+-.|.++.+|..+|+.--.
T Consensus 304 l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~ 383 (689)
T KOG1000|consen 304 LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ 383 (689)
T ss_pred HhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc
Confidence 4445699999999999999999999998877 78999999999999999999999999999999999999988875322
Q ss_pred C------CchhhHHHHHHHH-hHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000566 963 K------NPVKGYKKLQAVL-KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1035 (1416)
Q Consensus 963 k------~~~~~~~~L~~lL-~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g 1035 (1416)
- ..-.+..+|..+| +.+|+||+|.+|+. .|||+..+++.+ .+..+-+..+.+...+ ++ +
T Consensus 384 vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a-------~~-~ 449 (689)
T KOG1000|consen 384 VRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAA-------AD-Y 449 (689)
T ss_pred cceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHh-------hh-c
Confidence 1 1123456777776 55799999999997 899996555544 3332222222221111 11 1
Q ss_pred ccchhH-HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhccc
Q 000566 1036 TVKQNY-VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSIC 1114 (1416)
Q Consensus 1036 ~~~~~~-~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~C 1114 (1416)
+..... .+-+.+++..++
T Consensus 450 t~~~~~e~~~~~l~l~y~~------------------------------------------------------------- 468 (689)
T KOG1000|consen 450 TKVNSMERKHESLLLFYSL------------------------------------------------------------- 468 (689)
T ss_pred chhhhhhhhhHHHHHHHHH-------------------------------------------------------------
Confidence 100000 000000000000
Q ss_pred CcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHH
Q 000566 1115 GHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKA 1194 (1416)
Q Consensus 1115 gHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~a 1194 (1416)
..-.|+.+
T Consensus 469 ------------------------------------------------------------------------tgiaK~~a 476 (689)
T KOG1000|consen 469 ------------------------------------------------------------------------TGIAKAAA 476 (689)
T ss_pred ------------------------------------------------------------------------hcccccHH
Confidence 01245555
Q ss_pred HHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHH
Q 000566 1195 ALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKML 1274 (1416)
Q Consensus 1195 llelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~L 1274 (1416)
..|.|-...- + ...++.|++||+.+..+|
T Consensus 477 v~eyi~~~~~------------------------------------l---------------~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 477 VCEYILENYF------------------------------------L---------------PDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred HHHHHHhCcc------------------------------------c---------------ccCCCceEEEEehhHHHH
Confidence 5555544100 0 012789999999999999
Q ss_pred HHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000566 1275 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1354 (1416)
Q Consensus 1275 dlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRv 1354 (1416)
|-|+..+.+.++.++||||+++..+|+.+++.|+.+.+++|-|+|..|+|+||+|++|+.|+|.+++|||....||.+|+
T Consensus 506 d~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRa 585 (689)
T KOG1000|consen 506 DTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRA 585 (689)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000566 1355 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1392 (1416)
Q Consensus 1355 hRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~ 1392 (1416)
||+|||.-|.|++|++++|+||.++.+.++|...+.++
T Consensus 586 HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 586 HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988766
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.1e-52 Score=533.31 Aligned_cols=420 Identities=20% Similarity=0.288 Sum_probs=314.8
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 726 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 726 (1416)
.+.|+|||+..+.+++.+.. .+.|||||||||||++|++++.....
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~----------------------------- 195 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLL----------------------------- 195 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHH-----------------------------
Confidence 56799999999998876632 45799999999999999777643210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC----CC
Q 000566 727 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----KD 802 (1416)
Q Consensus 727 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~----kd 802 (1416)
....+++|||||++|+.||..|+.+++. +.+.+|.+..-. ..
T Consensus 196 ------------------------------~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~ 241 (956)
T PRK04914 196 ------------------------------TGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDA 241 (956)
T ss_pred ------------------------------cCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhcccc
Confidence 1234579999999999999999998875 556666654311 11
Q ss_pred cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccccccc
Q 000566 803 PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 882 (1416)
Q Consensus 803 ~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~ 882 (1416)
...+..+++||+||+.+...-. . .
T Consensus 242 ~~pf~~~~~vI~S~~~l~~~~~---------~-----------------------------------------------~ 265 (956)
T PRK04914 242 DNPFETEQLVICSLDFLRRNKQ---------R-----------------------------------------------L 265 (956)
T ss_pred cCccccCcEEEEEHHHhhhCHH---------H-----------------------------------------------H
Confidence 2445578999999999864200 0 0
Q ss_pred CcccccCccEEEEcCccccCCh---hhHHHHHHHhc--ccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhh
Q 000566 883 GPLAKVGWFRVVLDEAQSIKNH---RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 957 (1416)
Q Consensus 883 ~pL~~i~W~rVIlDEAH~IKN~---~S~~skal~~L--~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~ 957 (1416)
..+....|++||+||||++|+. .|+.++++..| +++++++|||||++|++.|+|++|+||+|+.|.++..|....
T Consensus 266 ~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~ 345 (956)
T PRK04914 266 EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQ 345 (956)
T ss_pred HHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHH
Confidence 1145568999999999999953 46778888888 678999999999999999999999999999999999997643
Q ss_pred cc--CC--------CCC--chhhHHHH-------------------------------HHHH-----hHhhhhhcccccc
Q 000566 958 KV--PI--------SKN--PVKGYKKL-------------------------------QAVL-----KTIMLRRTKGTLL 989 (1416)
Q Consensus 958 ~~--pi--------~k~--~~~~~~~L-------------------------------~~lL-----~~~mLRRtK~dVl 989 (1416)
.. |+ ... .......| +.++ ..+|+|+++.++.
T Consensus 346 ~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~ 425 (956)
T PRK04914 346 QQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK 425 (956)
T ss_pred HhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc
Confidence 21 11 000 01111111 1111 2578899998875
Q ss_pred CCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhh
Q 000566 990 DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSL 1069 (1416)
Q Consensus 990 dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~ 1069 (1416)
.+|++....+.++++++.+..+... .. ..+++ +.+|..+.
T Consensus 426 ------~fp~R~~~~~~l~~~~~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~------- 465 (956)
T PRK04914 426 ------GFPKRELHPIPLPLPEQYQTAIKVS---LE-----------------------ARARD-MLYPEQIY------- 465 (956)
T ss_pred ------CCCcCceeEeecCCCHHHHHHHHHh---HH-----------------------HHHHh-hcCHHHHH-------
Confidence 5899999999999987654443210 00 01111 11221000
Q ss_pred hhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchh
Q 000566 1070 LRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1149 (1416)
Q Consensus 1070 ~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf 1149 (1416)
. . ++.
T Consensus 466 -----~---~------------~~~------------------------------------------------------- 470 (956)
T PRK04914 466 -----Q---E------------FED------------------------------------------------------- 470 (956)
T ss_pred -----H---H------------Hhh-------------------------------------------------------
Confidence 0 0 000
Q ss_pred hhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCC
Q 000566 1150 SKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDS 1229 (1416)
Q Consensus 1150 ~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1229 (1416)
....+..++|++.++++|+.+
T Consensus 471 --------------------------------~~~~~~~d~Ki~~L~~~L~~~--------------------------- 491 (956)
T PRK04914 471 --------------------------------NATWWNFDPRVEWLIDFLKSH--------------------------- 491 (956)
T ss_pred --------------------------------hhhccccCHHHHHHHHHHHhc---------------------------
Confidence 000011258999999888762
Q ss_pred CCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHHh
Q 000566 1230 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFN 1308 (1416)
Q Consensus 1230 ~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn 1308 (1416)
.++|+|||+++..+++.|+..| ...|++++.|+|+|+..+|+++++.|+
T Consensus 492 ------------------------------~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 492 ------------------------------RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred ------------------------------CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 4689999999999999999999 567999999999999999999999999
Q ss_pred cCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000566 1309 TLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1387 (1416)
Q Consensus 1309 ~d~-~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~ 1387 (1416)
+++ +++||| ++.+||+||||+.|++||+||+||||..++|||||+||+||+++|.||+++.++|+|++|+++..+|..
T Consensus 542 ~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 542 DEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred cCCCCccEEE-echhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 853 688887 569999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhCC
Q 000566 1388 MVASAFGE 1395 (1416)
Q Consensus 1388 l~~~~~g~ 1395 (1416)
+++..++.
T Consensus 621 ife~~~~~ 628 (956)
T PRK04914 621 AFEHTCPT 628 (956)
T ss_pred ceeccCCC
Confidence 77665544
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-50 Score=500.75 Aligned_cols=258 Identities=33% Similarity=0.572 Sum_probs=201.3
Q ss_pred CCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CcccccCCCEEEEechhhhccCCCCCCCCchhHHH
Q 000566 759 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEE 836 (1416)
Q Consensus 759 p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k--d~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~e 836 (1416)
-.|+||||||.+++.||-+||.+|+.. .|+|+.|.|-...- .+.++.+||||+|||++++.|+.... +
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte-----~--- 488 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTE-----D--- 488 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhccc-----c---
Confidence 458999999999999999999999873 47999999986543 45788999999999999998874320 0
Q ss_pred HhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcc
Q 000566 837 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 916 (1416)
Q Consensus 837 k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ 916 (1416)
.+..|..+.+++.+ ...+||..+.||||||||||.+....|..++++..|.
T Consensus 489 -----------------------~~~~R~lR~qsr~~------~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 489 -----------------------FGSDRQLRHQSRYM------RPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLH 539 (1394)
T ss_pred -----------------------cCChhhhhcccCCC------CCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhh
Confidence 00111111111111 2468999999999999999999999999999999999
Q ss_pred cCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCCCCchhhHHHHHHHHhHhhhhhccccccCCCCccC
Q 000566 917 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996 (1416)
Q Consensus 917 ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~k~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~ 996 (1416)
+.+|||+||||||+ ++||+++|.||+..||....+|...+..++... .....+..+++..+.|+.|-+|.+. +.
T Consensus 540 ~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~e---l~ 613 (1394)
T KOG0298|consen 540 AINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHE---LG 613 (1394)
T ss_pred hhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHH---hC
Confidence 99999999999999 999999999999999999999999887766554 3445788999999999999988763 67
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHH----HHHHHHHHHHHHc---------CccchhHHHHHHHHHHHHHHccCcccc
Q 000566 997 LPPKVIMLKQVDFTDEERDFYSQLE----INSRDQFKEYAAA---------GTVKQNYVNILLMLLRLRQACDHPLLV 1061 (1416)
Q Consensus 997 LPpk~e~vv~v~lS~eEr~~Y~~L~----~~s~~~~~~~~~~---------g~~~~~~~~IL~lLlrLRq~c~HP~Lv 1061 (1416)
+||..+.+.+..+++.+-.+|+... ..++..+...... +........++..++||||+|+||...
T Consensus 614 ~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 614 LPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred CCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhcccccc
Confidence 9999888888888887777776543 3333332222211 111234556889999999999999653
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-42 Score=401.56 Aligned_cols=291 Identities=40% Similarity=0.653 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHhh------ccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000566 653 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 726 (1416)
Q Consensus 653 hQk~al~wMl~~E------~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 726 (1416)
||++||.||+.++ ......+|||||||||+|||+++|+++......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~---------------------------- 52 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNE---------------------------- 52 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHC----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhc----------------------------
Confidence 8999999999998 111244899999999999999999999642210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC--CCCCcc
Q 000566 727 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 804 (1416)
Q Consensus 727 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~--r~kd~~ 804 (1416)
......+++|||||++++.||..|+.+|+. +..+++++|+|.. +.....
T Consensus 53 ----------------------------~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 53 ----------------------------FPQRGEKKTLIVVPSSLLSQWKEEIEKWFD-PDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ----------------------------CTTSS-S-EEEEE-TTTHHHHHHHHHHHSG-T-TS-EEEESSSCHHHHTTSS
T ss_pred ----------------------------cccccccceeEeeccchhhhhhhhhccccc-ccccccccccccccccccccc
Confidence 000112359999999999999999999985 3368999999987 333455
Q ss_pred cccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCc
Q 000566 805 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 884 (1416)
Q Consensus 805 ~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~p 884 (1416)
....++++|+||+.+..... ......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~------------------------------------------------------~~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARK------------------------------------------------------KKDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TS------------------------------------------------------THTTHH
T ss_pred ccccceeeeccccccccccc------------------------------------------------------cccccc
Confidence 67889999999999971000 001123
Q ss_pred ccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCCCC
Q 000566 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 964 (1416)
Q Consensus 885 L~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~k~ 964 (1416)
+..++|++||+||||.+||..+..++++..|++.+||+|||||++|++.|||++++||.++.+.+...|...+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 66688999999999999999999999999999999999999999999999999999999999999999998886653344
Q ss_pred chhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHH
Q 000566 965 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044 (1416)
Q Consensus 965 ~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~I 1044 (1416)
......+|+.+++.+++||++.++.. .||+..+.++.++|+++|+++|+.+....+..++... +........+
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~ 282 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHH
T ss_pred ccccccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 45667899999999999999999843 7999999999999999999999988766554433322 2344677889
Q ss_pred HHHHHHHHHHccCcccc
Q 000566 1045 LLMLLRLRQACDHPLLV 1061 (1416)
Q Consensus 1045 L~lLlrLRq~c~HP~Lv 1061 (1416)
+..+++|||+|+||.|+
T Consensus 283 ~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHhCCcccC
Confidence 99999999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-34 Score=359.35 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=102.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.++|+|||++++..++.+...| +. ..++|.++..+|.+++++|+..+.+.|||+| ++|++|+||+.|++||+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeC
Confidence 5789999999999988888877 33 3489999999999999999976788998877 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCCc-----EEEEEEEeCCCHHHHHHH
Q 000566 1340 LWW-NPTTEDQAIDRAHRIGQTRP-----VSVLRLTVKNTVEDRILA 1380 (1416)
Q Consensus 1340 p~W-NPa~e~QAiGRvhRIGQtr~-----V~VyrLi~kdTIEErIl~ 1380 (1416)
+++ ++..+.||+||+.|.+..+. .++|.|++++|.|+..-.
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 986 99999999999999987653 799999999999987644
No 22
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=378.34 Aligned_cols=398 Identities=26% Similarity=0.395 Sum_probs=288.8
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
..|.+||.+|++|+......+ --+|||||||||||+++|++.......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 469999999999999776643 348999999999999998887443211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 807 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~ 807 (1416)
....+|.||++|.+.+.+|..|+..|.+ .+.+..|+|....+......
T Consensus 342 -----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirep 389 (696)
T KOG0383|consen 342 -----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREP 389 (696)
T ss_pred -----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhcc
Confidence 1123578999999999999999999976 68888899986543211100
Q ss_pred ----CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000566 808 ----KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 883 (1416)
Q Consensus 808 ----~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~ 883 (1416)
.-+-+.+.-.+..+ +.....+... .-..-.+.+....
T Consensus 390 e~s~ed~~~~~~~~i~~~-----------------------------------~~~s~~k~~v----l~~s~~~~~~~~~ 430 (696)
T KOG0383|consen 390 EFSFEDSSIKSSPKISEM-----------------------------------KTESSAKFHV----LLPSYETIEIDQS 430 (696)
T ss_pred cccccccccccCCccccc-----------------------------------cchhhccccc----CCCchhhcccCHH
Confidence 00001111000000 0000000000 0000001122245
Q ss_pred cccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCCC
Q 000566 884 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 963 (1416)
Q Consensus 884 pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~k 963 (1416)
.+..+.|..+|+||+|++||..+...+.+......++++|||||.+|++++|+++|+||.++.|.+..+|.+.|.. -
T Consensus 431 il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d---~ 507 (696)
T KOG0383|consen 431 ILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD---I 507 (696)
T ss_pred HHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch---h
Confidence 5889999999999999999999999999988899999999999999999999999999999999999999887653 2
Q ss_pred CchhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Q 000566 964 NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 1043 (1416)
Q Consensus 964 ~~~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~ 1043 (1416)
......+.|+.++.+.|+||.|.++++ ..|++++-++.+.|++-|+++|+.++...-..+.. | .+-..
T Consensus 508 ~~~~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~----~---~~~~s 575 (696)
T KOG0383|consen 508 SCEEQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA----G---VHQYS 575 (696)
T ss_pred hHHHHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh----c---chhHH
Confidence 234567889999999999999999998 69999999999999999999999987654433322 2 22334
Q ss_pred HHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhh
Q 000566 1044 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI 1123 (1416)
Q Consensus 1044 IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci 1123 (1416)
++..++.||+.|+||++...... ... ...++.+.
T Consensus 576 ~~n~~mel~K~~~hpy~~~~~e~------------~~~--~~~~~~~~-------------------------------- 609 (696)
T KOG0383|consen 576 LLNIVMELRKQCNHPYLSPLEEP------------LEE--NGEYLGSA-------------------------------- 609 (696)
T ss_pred HHHHHHHHHHhhcCcccCccccc------------ccc--chHHHHHH--------------------------------
Confidence 56788999999999998743110 000 00000000
Q ss_pred hhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhc
Q 000566 1124 CERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLA 1203 (1416)
Q Consensus 1124 ~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~ 1203 (1416)
....+.|+..|...+++
T Consensus 610 -------------------------------------------------------------l~k~~~k~~~l~~~~~~-- 626 (696)
T KOG0383|consen 610 -------------------------------------------------------------LIKASGKLTLLLKMLKK-- 626 (696)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHH--
Confidence 00013344444443433
Q ss_pred CCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHh
Q 000566 1204 KPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1283 (1416)
Q Consensus 1204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~ 1283 (1416)
++..++||+||+|++.++|+|+.++..
T Consensus 627 -----------------------------------------------------l~~~ghrvl~~~q~~~~ldlled~~~~ 653 (696)
T KOG0383|consen 627 -----------------------------------------------------LKSSGHRVLIFSQMIHMLDLLEDYLTY 653 (696)
T ss_pred -----------------------------------------------------HHhcchhhHHHHHHHHHHHHhHHHHhc
Confidence 233789999999999999999999999
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccc
Q 000566 1284 SSIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLG 1326 (1416)
Q Consensus 1284 ~gI~~~rldGsms~~qR~~aI~~Fn~-d~~v~VLL~StkaGg~G 1326 (1416)
.+ .|.|+||..+..+|+++|++||. +..-.++|+||+|||+|
T Consensus 654 ~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 654 EG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99 99999999999999999999996 35688999999999988
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=7.7e-30 Score=332.38 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=112.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC--------CCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGs--------ms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~ 1331 (1416)
++.|+|||+++..++++|...|...|+++.+++|. |+..+|.+++++|++ +++.||| +|.++++|+|++.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~vLv-aT~~~~eGldi~~ 441 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNVLV-STSVAEEGLDIPS 441 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCccc
Confidence 57899999999999999999999999999999987 899999999999998 6788877 6689999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000566 1332 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1389 (1416)
Q Consensus 1332 An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~ 1389 (1416)
+++||+|||+||+....|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999999999999998888877765 789999999999999887776665554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=8e-25 Score=255.40 Aligned_cols=460 Identities=17% Similarity=0.163 Sum_probs=288.7
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
+.-|.||..-++-.+.+ -.+++-.+|||||+.|+.+|+.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 45678999988887754 25899999999999997777643211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-ccc
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCE 805 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd-~~~ 805 (1416)
-.+..|+++|+. |+.|-.+-+.+.+. -+.-.+..+.|.-+... ...
T Consensus 57 -------------------------------~~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 -------------------------------FGGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred -------------------------------cCCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHH
Confidence 012589999985 88999998887765 44678999999877653 456
Q ss_pred ccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcc
Q 000566 806 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 885 (1416)
Q Consensus 806 L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL 885 (1416)
|.+..|++.|.+++.+++.. +.+
T Consensus 105 w~~~kVfvaTPQvveNDl~~---------------------------------------------------------Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLKA---------------------------------------------------------GRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHhc---------------------------------------------------------Ccc
Confidence 78999999999999876521 223
Q ss_pred cccCccEEEEcCccccCChhhHHHHH--HHhccc-CcEEEeecccCCCChHHHHhhhhhccCCCccchHHHHhhhccCCC
Q 000566 886 AKVGWFRVVLDEAQSIKNHRTQVARA--CWGLRA-KRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 962 (1416)
Q Consensus 886 ~~i~W~rVIlDEAH~IKN~~S~~ska--l~~L~a-k~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~ 962 (1416)
.--.+.+||+||||+.-+..+-++-+ ..+-.. .+.++|||||= ++++.+...+.=|+.+
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe----------------- 189 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE----------------- 189 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc-----------------
Confidence 33456789999999976544333333 222233 36899999994 2233333333322221
Q ss_pred CCchhhHHHHHHHHhHhhhhhccc-cccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchh-
Q 000566 963 KNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN- 1040 (1416)
Q Consensus 963 k~~~~~~~~L~~lL~~~mLRRtK~-dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~- 1040 (1416)
.+.+|.-.+ ||.. .+-++..+.++|+++++-.++-+.+..-....++.+...|-....
T Consensus 190 ---------------~vevrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 190 ---------------KVEVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred ---------------eEEEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 122222221 1211 455678889999999988888888777777777777766643322
Q ss_pred ---HHHHHHHHHHHHHHccCcccccccCchhhhhh--HHHHHhhch-------HHHHHHHHHHhhhhccccccCCCCCCc
Q 000566 1041 ---YVNILLMLLRLRQACDHPLLVKGFDSNSLLRS--SVEMAKKLP-------QERQMYLLNCLEASLAICGICNDPPED 1108 (1416)
Q Consensus 1041 ---~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~--~~e~a~~l~-------~e~~~~ll~~le~~~~~C~iC~d~~~~ 1108 (1416)
...++.+. ..+.... +. . ....++. ....+.++. ......+..+|+.....|.-
T Consensus 250 ~~~~kdl~~~~-~~~~~~a-~~----~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~------- 315 (542)
T COG1111 250 PVSKKDLLELR-QIRLIMA-KN----E-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK------- 315 (542)
T ss_pred cccHhHHHHHH-HHHHHhc-cC----c-cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc-------
Confidence 22233332 1221111 10 0 1111110 011111111 11111111112111000000
Q ss_pred chhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccc
Q 000566 1109 AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYN 1188 (1416)
Q Consensus 1109 ~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ 1188 (1416)
-.......+-.+..|.++....- ........
T Consensus 316 --------------------------~~sk~a~~l~~d~~~~~al~~~~-----------------------~~~~~~v~ 346 (542)
T COG1111 316 --------------------------GGSKAAKSLLADPYFKRALRLLI-----------------------RADESGVE 346 (542)
T ss_pred --------------------------cchHHHHHHhcChhhHHHHHHHH-----------------------HhccccCC
Confidence 00000000111111111100000 00112234
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEc
Q 000566 1189 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFS 1268 (1416)
Q Consensus 1189 ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFS 1268 (1416)
.+|++.+.++|++..+ +.++.++|||+
T Consensus 347 HPKl~~l~eilke~~~-----------------------------------------------------k~~~~RvIVFT 373 (542)
T COG1111 347 HPKLEKLREILKEQLE-----------------------------------------------------KNGDSRVIVFT 373 (542)
T ss_pred CccHHHHHHHHHHHHh-----------------------------------------------------cCCCceEEEEe
Confidence 6888888888887421 12568999999
Q ss_pred ccHHHHHHHHHHHHhcCCcEE-ecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1269 QWTKMLDLLEASLKDSSIQYR-RLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1269 q~t~~LdlLe~~L~~~gI~~~-rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
+|+++++.|..+|...|+... ++-| +|++++..++|++|+. +++.||| +|..|-+||++...+-||+||
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEec
Confidence 999999999999999988875 6655 6999999999999999 8899998 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1392 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~ 1392 (1416)
|.=.|-+..||.||.+|- +.-+||.|+++||-|+..+....+|.+.+...
T Consensus 452 pvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~ 501 (542)
T COG1111 452 PVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIES 501 (542)
T ss_pred CCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 998888888888877764 77788899999999998888887776655443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=9.4e-23 Score=248.61 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.+++||+.....++.|...|...|+ ...++|.++..+|.++++.|+..+ +.||+ +.+.+.+|+++..|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv-~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV-TVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE-EeeeccceecCCCCcEEEEeC
Confidence 368999999999999999999999988 889999999999999999999944 77776 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhcc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000566 1340 LWWNPTTEDQAIDRAHRI-GQTRP--VSVLRLTVKNTVEDRILALQQK 1384 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRI-GQtr~--V~VyrLi~kdTIEErIl~lq~~ 1384 (1416)
|.=++..+.|++||+.|. ..+.. +.+|-++.+++.+..+......
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999994 44444 7777788888888877766653
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=1.6e-22 Score=250.86 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=103.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.++|||+..+.+++.|...|+..|+++..++|+|+.++|.++++.|+. +...|||.|.+..++|+++...++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec
Confidence 45789999999999999999999999999999999999999999999986 67788998889999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc-EEEEEEEeCCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRP-VSVLRLTVKNT 1373 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~-V~VyrLi~kdT 1373 (1416)
|.-+.....|++||++|.|..++ +.||.|+-.-.
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999998765 89999886544
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2e-20 Score=215.45 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=94.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.|+|||+...-.|...+..|.+ + .|+|.++..+|-+++++|+.++.+.-+.+| ++|...++|..|+.+|-+.
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~K---p--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGK---P--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCC---c--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 789999999877666555444433 3 478999999999999999999999888888 9999999999999999998
Q ss_pred CCC-CcChHHHHHHhhhccCCCC----cEEEEEEEeCCCHHHHH
Q 000566 1340 LWW-NPTTEDQAIDRAHRIGQTR----PVSVLRLTVKNTVEDRI 1378 (1416)
Q Consensus 1340 p~W-NPa~e~QAiGRvhRIGQtr----~V~VyrLi~kdTIEErI 1378 (1416)
.+. ....|.||.||+-|--... .++.|-|+.+||.|...
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 886 5668999999999965322 28999999999988643
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.82 E-value=4.8e-18 Score=209.41 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=99.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.++|||+.....++.+...|...|+....++|+|+..+|+.+++.|++ +.++||| +|.+++.|||+...++||++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLV-aTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLV-ATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EecccccccchhcCCeEEEec
Confidence 34689999999999999999999999999999999999999999999997 7888888 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
++.++....||+||+.|.|+.-. .+.|+..+
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 99999999999999999998743 45556554
No 29
>PTZ00110 helicase; Provisional
Probab=99.81 E-value=4.4e-18 Score=213.01 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=99.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.|+|||++....++.|...|+..|+....++|.++..+|.++++.|++ +.++||| +|.+++.|||+..+++||+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILV-aTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMI-ATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEE-EcchhhcCCCcccCCEEEEeC
Confidence 45799999999999999999999999999999999999999999999998 7778776 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+++++....||+||+.|.|++-. ++.|+.++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999998754 35556655
No 30
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.80 E-value=4.4e-17 Score=201.08 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccC
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1328 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLN 1328 (1416)
++.++|||+.++..++.|..+|.. .|++...+-| +|+..+..++|+.|++ +++.||| +|..|.+||+
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCC
Confidence 568999999999999999999983 3566555544 6999999999999999 8999998 6699999999
Q ss_pred ccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000566 1329 MVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1392 (1416)
Q Consensus 1329 Lq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~ 1392 (1416)
...++-||-||..-||-...||+|| +| ++.=+++-|.. +.-+-.--..+..|+.++...
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~ 548 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQT 548 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999 55 45544444454 332222333344455554444
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=9.3e-18 Score=205.41 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=96.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
...++|||+.....++.|...|...|+....++|.|+..+|..+++.|+. +.++||| +|.+++.|+|+...++||+||
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLV-aTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLV-ATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCccCCCCCEEEEEC
Confidence 34789999999999999999999999999999999999999999999997 8888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEE
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~V 1365 (1416)
+++++....||+||++|.|.+-.+.+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999998765444
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1e-17 Score=206.77 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=97.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.+.|||+......+.+...|+..|+....|+|+|+.++|.++++.|.. +.++||+ +|.+.|.|+|+...++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCCcccceEEEEeC
Confidence 45677999999999999999999999999999999999999999999997 7889888 568999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1366 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~Vy 1366 (1416)
++.++....|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999988774443
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.79 E-value=2.1e-17 Score=206.11 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=96.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
.++|||+.....++.|...|.. .|+++..++|+++.++|..+++.|+. ++++||| +|.+++.|||+..+++||+||+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILV-aTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIV-ATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-EecHhhccCCcccCCEEEEeCC
Confidence 5799999999999999999975 69999999999999999999999998 7888887 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+.++....|++||++|.|++- +++.|+..+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 999999999999999999754 444566554
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.9e-17 Score=202.11 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=98.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..|+|||+.....++.|...|...|+.+..++|.|+.++|.+++++|++ ++++||| +|.+++.|||+...++||+||+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEEEeCC
Confidence 4789999999999999999999999999999999999999999999998 7888888 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
++++....|++||+.|.|+.-. ++.|+.++
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred CCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 9999999999999999997754 44456543
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.78 E-value=2.2e-17 Score=203.22 Aligned_cols=108 Identities=23% Similarity=0.305 Sum_probs=97.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..++|||+......+.|...|...|+....++|.|+..+|.++++.|++ +.++||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7888888 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+.++....|++||+.|.|++-.+. .|+..+
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~ 352 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEAL--SLVCVD 352 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeEE--EEecHH
Confidence 999999999999999999876533 344443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=4.6e-17 Score=204.75 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=98.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.++|||+.....++.|.+.|...++.+..++|.|+..+|.++++.|++ ++++||| +|.+++.|||+...++||+||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEEEcC
Confidence 45789999999999999999999999999999999999999999999997 7888888 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
++|++....|++||+.|.|.+-.. +.|+..
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 999999999999999999987543 344544
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.77 E-value=6.3e-17 Score=195.84 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=97.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..++|||+.....++.+...|...++.+..++|+++.++|..+++.|++ +.++||+ +|.++++|+|+...++||++|+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLv-aT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLI-TTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-EcccccCCcCcccCCEEEEECC
Confidence 4689999999999999999999999999999999999999999999997 7888887 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+.++....|++||++|.|..- .++.|+.++
T Consensus 345 p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CCCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 999999999999999998653 455566554
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=9.4e-17 Score=198.72 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=98.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
...|+|||++....++.|...|...|+.+..++|.++.++|.++++.|++ ++++||| +|.++++|||+...++||+++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999998 7888888 679999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+++++....|++||++|.|+.-. ++.|+.++
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999999998654 34445443
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.76 E-value=2.3e-16 Score=199.80 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=94.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..++|||+......+.|...|...|+....++|.|+..+|++++++|+. +.+.||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILV-ATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILI-ATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcchHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7888887 7799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcE
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPV 1363 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V 1363 (1416)
+.++....|++||+.|.|.+-..
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred CCCHHHHHHHhccccCCCCcceE
Confidence 99999999999999999986543
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.76 E-value=1e-16 Score=203.38 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=94.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.+.|||+......+.+...|+..|+.+..|+|+|+.++|.++++.|.. +.++||| +|.+.|.|+|+...++||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 45789999999999999999999999999999999999999999999997 7788888 568999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
++.+.....|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997655
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=1.2e-16 Score=202.82 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
+.+.|||+......+.+...|...|+++..|+|+|+.++|..+++.|.. +.++||+ +|.+.|.|+|+...++||++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 4688999999999999999999999999999999999999999999998 6788887 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEE
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVS 1364 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~ 1364 (1416)
+++.....|++||++|.|+.....
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=1.1e-15 Score=194.93 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCc
Q 000566 1284 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1284 ~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~W-NPa~e~QAiGRvhRIGQtr~ 1362 (1416)
.++++..++|.|+.++|.+++++|++ ++++||| +|.+.++|+|+..++.||+++++. .-+...|++||++|-|.+-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 36788999999999999999999998 7788888 668999999999999999999874 66788999999999987654
Q ss_pred EE
Q 000566 1363 VS 1364 (1416)
Q Consensus 1363 V~ 1364 (1416)
+.
T Consensus 559 ~i 560 (630)
T TIGR00643 559 CL 560 (630)
T ss_pred EE
Confidence 43
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.72 E-value=5.8e-16 Score=204.90 Aligned_cols=106 Identities=14% Similarity=0.348 Sum_probs=85.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CC---cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS------SI---QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1331 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~------gI---~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~ 1331 (1416)
+.|.|||+....+++.+.+.|.+. ++ .+..++|+++ ++.+++++|+++ ....+++|.+..++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCccc
Confidence 479999999999999888887653 22 3467899975 678899999884 44355558899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCC---CCcEEEEEEE
Q 000566 1332 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRLT 1369 (1416)
Q Consensus 1332 An~VI~~Dp~WNPa~e~QAiGRvhRIGQ---tr~V~VyrLi 1369 (1416)
.++||++.|.-++....|++||+-|+-- |....|+-++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 4445555543
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.70 E-value=1.7e-15 Score=197.24 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=92.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
+.+++||++....++.+...|+.. ++++..+||.|+.++|.+++++|.+ ++++||| +|.+.+.|+|+..+++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEEEEe
Confidence 468999999999999999999874 7899999999999999999999998 7888888 67999999999999999999
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1339 DLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1339 Dp~-WNPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
+++ +......|++||++|-|++- ++|.|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 885 45567889999999988654 45555544
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.69 E-value=2.9e-15 Score=199.00 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=90.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
+.+++||++....++.+.+.|.+. ++++..++|.|+.++|++++.+|.+ ++++||| +|.+.+.|||+..+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEe
Confidence 468999999999999999999886 7899999999999999999999998 7889988 66999999999999999987
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcEE
Q 000566 1339 DLW-WNPTTEDQAIDRAHRIGQTRPVS 1364 (1416)
Q Consensus 1339 Dp~-WNPa~e~QAiGRvhRIGQtr~V~ 1364 (1416)
++. |..+...|++||++|.|++--++
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 764 67778999999999998875433
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.69 E-value=6.8e-15 Score=188.86 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCcE
Q 000566 1285 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPV 1363 (1416)
Q Consensus 1285 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~W-NPa~e~QAiGRvhRIGQtr~V 1363 (1416)
++++..++|+|+.++|++++++|.+ ++++||| +|.+.++|+|+..++.||+++++. ..+...|++||++|-|.+-
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g-- 580 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS-- 580 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--
Confidence 4788999999999999999999998 7888887 679999999999999999999874 5678889999999998754
Q ss_pred EEEEEE
Q 000566 1364 SVLRLT 1369 (1416)
Q Consensus 1364 ~VyrLi 1369 (1416)
+++.+.
T Consensus 581 ~~ill~ 586 (681)
T PRK10917 581 YCVLLY 586 (681)
T ss_pred EEEEEE
Confidence 344444
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.67 E-value=4.4e-15 Score=190.98 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=96.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
+.+.|||+......+.|...|...|+....|+|+|+.++|..++++|.. ++++||| +|.+.|.|||+...++||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLV-ATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIIC-ATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEE-EechhhcCCCccCCcEEEEcCC
Confidence 3567999999999999999999999999999999999999999999998 7888888 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEE
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVL 1366 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~Vy 1366 (1416)
+-+.....|++||++|.|+.-.+..+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999998764443
No 48
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=9.1e-15 Score=176.20 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.|+|||++...+.+.|++.|+..+++.+.|||..++.+|+.+++.|++ +...||| .|+.++.||++...++||+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCC
Confidence 56799999999999999999999999999999999999999999999998 7788888 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
+|=|.....+|+||..|-|++-.
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999888765
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.62 E-value=7.9e-14 Score=180.03 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=98.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS--------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1332 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~--------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~A 1332 (1416)
+.|+|||++.....+.|...|+.. +.++..|+|++++++|.++.++|++ +.++||+ +|.+++.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEE-ECchHhccCCcccc
Confidence 479999999999999999988753 5677899999999999999999998 8888887 77999999999999
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 000566 1333 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1379 (1416)
Q Consensus 1333 n~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl 1379 (1416)
++||+++.|-+.....||+||++|.|+.-- ++.++..+..|..++
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 999999999999999999999999997653 333444455665443
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.59 E-value=1.7e-13 Score=180.12 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=91.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH 1334 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~ 1334 (1416)
+.++|||++.....+.+...|... +..+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+...++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999999762 4678899999999999999999998 7788887 6699999999999999
Q ss_pred EEEEcCCCCcChHHHHHHhhhcc-CCCCcEEEEE
Q 000566 1335 VLLLDLWWNPTTEDQAIDRAHRI-GQTRPVSVLR 1367 (1416)
Q Consensus 1335 VI~~Dp~WNPa~e~QAiGRvhRI-GQtr~V~Vyr 1367 (1416)
||+++++.+.....||+||++|- |+...-.++-
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999975 5555544443
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.59 E-value=1.7e-13 Score=178.04 Aligned_cols=82 Identities=20% Similarity=0.082 Sum_probs=67.8
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec-----CCCCcChHHHHHHhhhcc
Q 000566 1287 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-----LWWNPTTEDQAIDRAHRI 1357 (1416)
Q Consensus 1287 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~----~D-----p~WNPa~e~QAiGRvhRI 1357 (1416)
.+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. || .+.++....|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 46678999999999999999998 8899888 6699999999998877775 66 466778899999999999
Q ss_pred CCCCcEEEEEEEe
Q 000566 1358 GQTRPVSVLRLTV 1370 (1416)
Q Consensus 1358 GQtr~V~VyrLi~ 1370 (1416)
|....-.++-+..
T Consensus 383 g~d~~G~~ii~~~ 395 (737)
T PRK02362 383 GLDPYGEAVLLAK 395 (737)
T ss_pred CCCCCceEEEEec
Confidence 9876544444443
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=99.54 E-value=9.7e-13 Score=169.76 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.4
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---------CCcChHHHHHHhhhccC
Q 000566 1288 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---------WNPTTEDQAIDRAHRIG 1358 (1416)
Q Consensus 1288 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~---------WNPa~e~QAiGRvhRIG 1358 (1416)
+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+++ .+||+++.+ +.+....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 4567999999999999999997 7888888 6699999999985 688887643 45556789999999999
Q ss_pred CCCc
Q 000566 1359 QTRP 1362 (1416)
Q Consensus 1359 Qtr~ 1362 (1416)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7665
No 53
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=1.1e-12 Score=168.17 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=73.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc-----CCcEEecCCCCCHH---------------------HHHHHHHHHhcCCCcc
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS-----SIQYRRLDGTMSVF---------------------ARDKAVKDFNTLPEVS 1314 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~-----gI~~~rldGsms~~---------------------qR~~aI~~Fn~d~~v~ 1314 (1416)
+.|.+||+.....+..+...|.+. +...+.++|+.+.+ .+.+++++|++++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 356666666666665555555432 22334444443222 3457999998866788
Q ss_pred EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc-CC-CCcEEEEEEEe
Q 000566 1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQ-TRPVSVLRLTV 1370 (1416)
Q Consensus 1315 VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRI-GQ-tr~V~VyrLi~ 1370 (1416)
+||+. ....+|.+.+..+++++.-|--.. ...||+||+.|+ +- |....|+.|+-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 88755 999999999999999998887655 468999999995 43 33467777654
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.53 E-value=1.3e-12 Score=156.13 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHH----HHHHhcCCCccEEEeeccccccccCccccC
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKA----VKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~a----I~~Fn~d~~v~VLL~StkaGg~GLNLq~An 1333 (1416)
.+.++|||++....++.+...|++.+. .+..++|.++..+|.+. ++.|.+ +..+||| +|.+++.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilv-aT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIV-ATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEE-ECcchhceecc-CCC
Confidence 457999999999999999999988776 48999999999999764 889987 6677766 77999999999 588
Q ss_pred EEEEEcCCCCcChHHHHHHhhhccCCCC----cEEEEEEEeCC
Q 000566 1334 HVLLLDLWWNPTTEDQAIDRAHRIGQTR----PVSVLRLTVKN 1372 (1416)
Q Consensus 1334 ~VI~~Dp~WNPa~e~QAiGRvhRIGQtr----~V~VyrLi~kd 1372 (1416)
.||.++.+ +....||+||++|.|.+. .|+|+.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88887765 778999999999999764 35555544444
No 55
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3e-12 Score=159.46 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=102.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
.++|||+.-...++.|...|...|+....|+|++++.+|.++++.|++ +.++|||+ |++++.||++...++||+||++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLVa-TDvaaRGiDi~~v~~VinyD~p 351 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLVA-TDVAARGLDIPDVSHVINYDLP 351 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEE-echhhccCCccccceeEEccCC
Confidence 479999999999999999999999999999999999999999999996 88999995 5999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1385 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K 1385 (1416)
.++....+|+||..|.|.+- ..+.|+.. .-|...+...++.
T Consensus 352 ~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 99999999999999999554 44445554 2244444444433
No 56
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=6e-14 Score=141.74 Aligned_cols=105 Identities=31% Similarity=0.479 Sum_probs=96.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.|+|||+.....++.+...|...++++..++|+++..+|..+++.|+. +...+++ ++.++++|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili-~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLV-ATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EcChhhcCcChhhCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 4455555 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1366 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~Vy 1366 (1416)
++|++....|++||++|.||+..|.++
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998877663
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.51 E-value=1.7e-12 Score=168.39 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=64.8
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-------EcCCCCc-ChHHHHHHhhhccC
Q 000566 1287 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-------LDLWWNP-TTEDQAIDRAHRIG 1358 (1416)
Q Consensus 1287 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~-------~Dp~WNP-a~e~QAiGRvhRIG 1358 (1416)
.+..++|+|+.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. +..++-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 46779999999999999999998 7889888 6699999999987776663 2222222 35689999999998
Q ss_pred CCCcEEEEEEEeCC
Q 000566 1359 QTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1359 Qtr~V~VyrLi~kd 1372 (1416)
....-.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 77665555555443
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.45 E-value=5.2e-12 Score=159.63 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------- 1330 (1416)
.+.++|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++.
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~VlI-ATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAVTV-ATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeEEE-EccccccccCCCCCccccccC
Confidence 57899999999999999999999999999999999987777666555554 25665 789999999998
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcE
Q 000566 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1363 (1416)
Q Consensus 1331 ~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V 1363 (1416)
..++|+.++++-+. .+.|++||++|.|.+-..
T Consensus 499 GL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 499 GLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred CeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 77888999998554 569999999999988763
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=3.1e-11 Score=154.07 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCc---cccC---
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM---VAAC--- 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNL---q~An--- 1333 (1416)
.+.++|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. .+|+| +|..+|.|+++ ....
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---GAVTV-ATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---CeEEE-EccchhcCcCCCccccccccc
Confidence 56899999999999999999999999999999999987777766666654 25665 77999999999 4666
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1334 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1334 --~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
+||.+|++-|+..+.|++||++|.|++-.... |+ |.|+.++.+
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999999999999999999998865322 22 446655543
No 60
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1e-11 Score=141.75 Aligned_cols=123 Identities=26% Similarity=0.291 Sum_probs=108.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.-+||||..-.+.+.+.-.|+..|+....++|.|++..|..+++.|+. +...||+ +|+.|+.||+.+.+++||+||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecC
Confidence 45789999999999999999999999999999999999999999999998 6667776 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH--HHHHHHHHHHH
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE--DRILALQQKKR 1386 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE--ErIl~lq~~K~ 1386 (1416)
.|-+--..+.|+||+.|.| +.-.+..|++.-.|| .||.....+|.
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999 666777888876555 35555555554
No 61
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=1.4e-11 Score=151.13 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=64.9
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcChHHHHHHhhhccCC
Q 000566 1285 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQ 1359 (1416)
Q Consensus 1285 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~-WNPa~e~QAiGRvhRIGQ 1359 (1416)
++++..+||.|+.+++++++.+|++ +++.||| ||.+.-+|+|+..|+.+|++++. +--+..-|--|||+|=+.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 4567889999999999999999998 8888888 77999999999999999999976 566788899999999443
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.7e-11 Score=134.54 Aligned_cols=109 Identities=20% Similarity=0.349 Sum_probs=99.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
...||||+-....|+|.+.|+...+.+..++|.|..++|++++++|+. +..+||| +++.-+.|++.+..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEE-EechhhccCCcceeEEEEecCCC
Confidence 468999999999999999999999999999999999999999999999 7788888 77999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTI 1374 (1416)
-|+...+.||||.+|.|.+- .+.+|+..+.+
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 99999999999999999875 45567766533
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=4.8e-11 Score=149.40 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=90.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq---~An--- 1333 (1416)
.+..+|||+......+.|...|.+.|+++..|+|.+. +|++.+..|.. ....|+| +|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag-~~g~VlV-ATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAG-QRGRITV-ATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcC-CCCcEEE-EccchhcccCcCCccchhhcC
Confidence 3567999999999999999999999999999999864 67777777765 3345665 779999999988 333
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000566 1334 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382 (1416)
Q Consensus 1334 --~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq 1382 (1416)
+||.+|.+=+...+.|++||+.|.|..-.+. .|+ |.|+.++.+-
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~~ 593 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQSF 593 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHhh
Confidence 9999999999999999999999999775432 223 4466555443
No 64
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.40 E-value=6.8e-13 Score=141.92 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=104.1
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
.+|++||.+++.-+++........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999998887544321125689999999999999998885521
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeC--CC------
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHG--SS------ 798 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G--~~------ 798 (1416)
.++|||||. +|+.||.+++..+... ...+....- ..
T Consensus 51 ---------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ---------------------------------RKVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ---------------------------------CEEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ---------------------------------cceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 158999998 6889999999766542 111111100 00
Q ss_pred -CCC-----CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000566 799 -RTK-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 872 (1416)
Q Consensus 799 -r~k-----d~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 872 (1416)
... ........++++++|+.+....... .... .. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------~~~~--~~-----------~--------------- 136 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE-----------KKID--ES-----------A--------------- 136 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhcccc-----------cccc--cc-----------h---------------
Confidence 000 1122357889999999997532100 0000 00 0
Q ss_pred CCCcccccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccC
Q 000566 873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 928 (1416)
Q Consensus 873 ~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPI 928 (1416)
.....+....+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 137 -------~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 137 -------RRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred -------hhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 001123455678999999999865432 66666688899999999995
No 65
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.40 E-value=3.1e-13 Score=125.48 Aligned_cols=78 Identities=33% Similarity=0.515 Sum_probs=72.8
Q ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccC
Q 000566 1279 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358 (1416)
Q Consensus 1279 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIG 1358 (1416)
+.|+..|+.+..++|.++.++|+++++.|+. +...||+ ++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS-GEIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT-TSSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc-cCceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3688999999999999999999999999999 5567777 5699999999999999999999999999999999999998
No 66
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.39 E-value=1e-10 Score=149.51 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=85.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-----HHHHHHhc----CC-----CccEEEeecccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-----KAVKDFNT----LP-----EVSVMIMSLKAASL 1325 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-----~aI~~Fn~----d~-----~v~VLL~StkaGg~ 1325 (1416)
.+.++|||++....++.|...|+..++ ..|+|.|+..+|. +++++|+. .. +-..+|++|++++.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 457899999999999999999999887 8999999999999 78999976 11 11345668899999
Q ss_pred ccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc--EEEEEE
Q 000566 1326 GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP--VSVLRL 1368 (1416)
Q Consensus 1326 GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~--V~VyrL 1368 (1416)
||++.. ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 999975 9999876664 689999999999999654 455433
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.37 E-value=1.1e-11 Score=155.95 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=92.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc-------c
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------A 1332 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~-------A 1332 (1416)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.. .
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCC
Confidence 67899999999999999999999999999999999 7899999999987 5567777 6699999999887 6
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEE
Q 000566 1333 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1333 n~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~V 1365 (1416)
-|||.++++-++..+.|++||++|.|..-....
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 799999999999999999999999999876433
No 68
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.35 E-value=6e-12 Score=134.79 Aligned_cols=167 Identities=27% Similarity=0.272 Sum_probs=111.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
.++++||.+++.+++... +..++...+|.|||.+++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 458999999999998431 468999999999999887777543211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeC-hhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCP-TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 806 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP-~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L 806 (1416)
.+.+.+|||+| ..+..||..++.+.+..........+++.........+
T Consensus 52 ------------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 52 ------------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred ------------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 01245899999 56889999999988763322556666665432222222
Q ss_pred c--CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCc
Q 000566 807 A--KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 884 (1416)
Q Consensus 807 ~--~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~p 884 (1416)
. .++++++|++.+...+.. ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2 239999999988653211 00
Q ss_pred ccccCccEEEEcCccccCC-hh-hHHHHHHHhc-ccCcEEEeecccCCCChHHHH
Q 000566 885 LAKVGWFRVVLDEAQSIKN-HR-TQVARACWGL-RAKRRWCLSGTPIQNAIDDLY 936 (1416)
Q Consensus 885 L~~i~W~rVIlDEAH~IKN-~~-S~~skal~~L-~ak~RwlLTGTPIqN~l~DLy 936 (1416)
+....|.++|+||||.+.+ .. ......+..+ ...+++++||||..+.....+
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHH
Confidence 2234578899999999985 33 3333333444 578899999999744433333
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.34 E-value=3.8e-10 Score=143.33 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
+.++|||..-...++.+.+.|++. ++.+..++|+++. +++++++|...+..+||| +|..++.||++....+||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 457999999999999999999887 7999999999985 467788885446677776 88999999999999999999
Q ss_pred cCCC------------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000566 1339 DLWW------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376 (1416)
Q Consensus 1339 Dp~W------------NPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEE 1376 (1416)
+... +.+...||.||++|. ++-.+|+|+.+.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7332 333445666666655 6788999998876543
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.33 E-value=1.9e-10 Score=137.61 Aligned_cols=85 Identities=13% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC--CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSS--IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~g--I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
++.|+|||+.....++.+...|+..+ +.+..++|.++..+|.++. ...||| +|.+++.||++.. ..||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLV-aTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDILL-GTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEEE-EecHHhcccCCCC-ceEE-
Confidence 56799999999999999999999865 5788999999999997653 445555 7799999999975 4666
Q ss_pred EcCCCCcChHHHHHHhhh
Q 000566 1338 LDLWWNPTTEDQAIDRAH 1355 (1416)
Q Consensus 1338 ~Dp~WNPa~e~QAiGRvh 1355 (1416)
++ +-++....||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 346677778888763
No 71
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=7.9e-11 Score=137.94 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=93.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1335 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~V 1335 (1416)
...++|+|+.......-+...|+ ...+.+-.|.|+.+.+.|.+++++|+. ++++|||.| ++.+.|+++-..+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 45799999999988777777776 346777789999999999999999999 899999966 999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1336 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1336 I~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
|+||||-.-.....|+||..|-||.- ++|.++.+
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999999975 44445544
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.33 E-value=1.3e-10 Score=149.23 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHHHHHhc--CCcEEecCCCCC--HHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCc--
Q 000566 1274 LDLLEASLKDS--SIQYRRLDGTMS--VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNP-- 1344 (1416)
Q Consensus 1274 LdlLe~~L~~~--gI~~~rldGsms--~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~---WNP-- 1344 (1416)
.+.+++.|++. ++++.++|+.+. .++|++++++|.+ +++.||| .|...+.|+|+...+.|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 44556666654 788899999886 4679999999998 7888888 56889999999999999888755 333
Q ss_pred -------ChHHHHHHhhhccCCCCcEEEEEEEe
Q 000566 1345 -------TTEDQAIDRAHRIGQTRPVSVLRLTV 1370 (1416)
Q Consensus 1345 -------a~e~QAiGRvhRIGQtr~V~VyrLi~ 1370 (1416)
....|+.||+.|.|....|.+..+-.
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 46889999999988777776655433
No 73
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.30 E-value=1.4e-10 Score=136.50 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=96.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
...+|||.+....+|.|++.|.+.|+++++|||+-+++||+.++..|++ +...||| .|+++|.||+.+..++||+||.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlV-aTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILV-ATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEE-EecccccCCCCCccceeeecch
Confidence 4689999999999999999999999999999999999999999999998 5667777 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
.-+-.....||||.+|-|+.-.+ .-|+++.
T Consensus 595 aksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred hhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 99999999999999999998653 3344443
No 74
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.28 E-value=9.6e-11 Score=145.26 Aligned_cols=107 Identities=12% Similarity=0.211 Sum_probs=84.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc----CCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDS----SIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1335 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~----gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~V 1335 (1416)
-.|.|||+....+++.|...|..+ +.. ...++|.. ++-++.|+.|........+.+|.+-...|++...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 469999999999999999999865 223 35677774 45567888998744444445588999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhcc-------CCCCc-EEEEEEE
Q 000566 1336 LLLDLWWNPTTEDQAIDRAHRI-------GQTRP-VSVLRLT 1369 (1416)
Q Consensus 1336 I~~Dp~WNPa~e~QAiGRvhRI-------GQtr~-V~VyrLi 1369 (1416)
+|+-+.-.-....|.+||.-|+ ||.|. .+|+-|+
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999997 45555 6665554
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.27 E-value=5e-10 Score=150.04 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=76.6
Q ss_pred CeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000566 1262 EKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1334 (1416)
Q Consensus 1262 ~KvIVFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkaGg~GLNLq~-An~ 1334 (1416)
.+.|||++.... ++.|...|+..|+++..++|+| .+.+++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcceeE
Confidence 478999998666 9999999999999999999999 334699998 889999986 789999999997 899
Q ss_pred EEEEcCCC------CcChHHHHHHhhhcc
Q 000566 1335 VLLLDLWW------NPTTEDQAIDRAHRI 1357 (1416)
Q Consensus 1335 VI~~Dp~W------NPa~e~QAiGRvhRI 1357 (1416)
||||+.|- .......+++|+-++
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999986 445556777777643
No 76
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.26 E-value=1e-11 Score=114.91 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhh
Q 000566 1276 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1355 (1416)
Q Consensus 1276 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvh 1355 (1416)
.|+..|+..++.+..++|.++.++|.++++.|++ +.. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4678888889999999999999999999999998 444 55568899999999999999999999999999999999999
Q ss_pred ccC
Q 000566 1356 RIG 1358 (1416)
Q Consensus 1356 RIG 1358 (1416)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 77
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.25 E-value=3.7e-11 Score=121.16 Aligned_cols=137 Identities=26% Similarity=0.233 Sum_probs=95.5
Q ss_pred CcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 000566 673 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 752 (1416)
Q Consensus 673 GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~ 752 (1416)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998653210
Q ss_pred hhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccccCCCEEEEechhhhccCCCCCCC
Q 000566 753 EQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 829 (1416)
Q Consensus 753 ~~~~~~p~~~TLIVcP~SLL-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~--~~L~~~DVVITTY~~l~~e~~k~~~~ 829 (1416)
...+.+||+||...+ .||.+++.++... .+.+.++++....... ......+++++||+.+......
T Consensus 28 -----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 28 -----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred -----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 012468999999855 5667777766542 5777777776544332 2246789999999988643210
Q ss_pred CchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCccccCChhhHHH
Q 000566 830 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 909 (1416)
Q Consensus 830 ~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~s 909 (1416)
..+....|++||+||+|.+.+......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002234688999999999988764443
Q ss_pred ---HHHHhcccCcEEEeeccc
Q 000566 910 ---RACWGLRAKRRWCLSGTP 927 (1416)
Q Consensus 910 ---kal~~L~ak~RwlLTGTP 927 (1416)
.........+++++||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 333445778899999998
No 78
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.20 E-value=9.7e-10 Score=147.95 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=80.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---------------------------------CcEEecCCCCCHHHHHHHHHHH
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSS---------------------------------IQYRRLDGTMSVFARDKAVKDF 1307 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~g---------------------------------I~~~rldGsms~~qR~~aI~~F 1307 (1416)
+.++|||++.....+.+...|++.. +....++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 3567788887777777777775421 1245688999999999999999
Q ss_pred hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc
Q 000566 1308 NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1357 (1416)
Q Consensus 1308 n~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRI 1357 (1416)
++ +.++||+ +|.+...|||+...+.||+++.|.+.....||+||++|.
T Consensus 324 K~-G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KS-GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred Hh-CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98 7888887 669999999999999999999999999999999999985
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.18 E-value=2.2e-09 Score=136.78 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=100.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcC-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSS-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..+|||++-+.+.+.+...|++.+ ..+..-|||++.++|..+-++|++ ++.++++ +|.....|++.-..+.||.|..
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV-~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVV-ATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEE-EccchhhccccCCceEEEEeCC
Confidence 589999999999999999999886 888899999999999999999999 7799988 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhh-ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000566 1341 WWNPTTEDQAIDRAH-RIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1387 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvh-RIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~ 1387 (1416)
|=.-+...||+||++ |+|.+-. .++++.+ .++.+.-+...+..
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred cHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHHH
Confidence 999999999999984 5665443 3344555 55555554444433
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=5.9e-10 Score=138.58 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=72.8
Q ss_pred HHHHHHHHhc--CCcEEecCCCCCHHHH--HHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC--CC-c---
Q 000566 1275 DLLEASLKDS--SIQYRRLDGTMSVFAR--DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW--WN-P--- 1344 (1416)
Q Consensus 1275 dlLe~~L~~~--gI~~~rldGsms~~qR--~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~--WN-P--- 1344 (1416)
+.+++.|++. +.++.++|+.++..++ +++++.|.+ +++.||| .|...+.|+++...+.|+++|.+ .+ |
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 3445555544 6788999999876655 899999998 7888887 56889999999999999876654 33 4
Q ss_pred ------ChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1345 ------TTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1345 ------a~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
....|+.||++|-+....|.+..+-.++
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 3578999999998887777665544443
No 81
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=2.8e-10 Score=135.85 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=98.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
..+|++||.+-.+.++.|+..|...++++..++|.-+..+|.++++.|.. +...||| .|..++.|||.....|||+||
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlV-aT~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLV-ATNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEE-EehhhhcCCCCCCCceeEEee
Confidence 34799999999999999999999999999999999999999999999998 7788888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRL 1368 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrL 1368 (1416)
.|=+-.....||||.+|.|+.-..+.+.-
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEec
Confidence 99999999999999999999987655433
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.16 E-value=3.1e-10 Score=135.63 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=96.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
-...|||+....-++-|+.+|...|+.+..+.|.|++.+|..+++..+. -.++||| |++..+.|++-..+|-||++|+
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILV-sTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILV-STDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEE-ecchhhccCCccccceEEecCC
Confidence 3567899999999999999999999999999999999999999999987 5677777 8899999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+-+..+...||||++|+|..- ..|..+..+.
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~~~ 380 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHG-AAVTLLEDER 380 (980)
T ss_pred CcchHHHHHHhhhcccccccc-eeEEEeccch
Confidence 999999999999999999765 4444444333
No 83
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.14 E-value=2.9e-09 Score=143.01 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=68.9
Q ss_pred CeEEEEcccH---HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000566 1262 EKAIVFSQWT---KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1334 (1416)
Q Consensus 1262 ~KvIVFSq~t---~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkaGg~GLNLq~-An~ 1334 (1416)
.+.|||++-. ..++.|...|+..|++...++|.++ ++++++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCccccE
Confidence 5789999988 8999999999999999999999996 478999998 889999986 689999999998 799
Q ss_pred EEEEcCC
Q 000566 1335 VLLLDLW 1341 (1416)
Q Consensus 1335 VI~~Dp~ 1341 (1416)
||+||+|
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999988
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=2.6e-09 Score=136.41 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------- 1330 (1416)
.+..+|||+......+.|...|.+.||++..++|.+...+|+.+.++|+. + .|+| +|..+|.|+++.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~-G--~VtI-ATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP-G--AVTI-ATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC-C--cEEE-eccCccCCcceecCCchhhhh
Confidence 68899999999999999999999999999999999999999999999998 3 3666 679999998865
Q ss_pred -----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1331 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1331 -----------------------------~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
..=|||.-+.+=+-.++.|..||++|.|..-....|. |+|+.++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~~ 593 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMRI 593 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHH
Confidence 2358899999999999999999999999987744432 566666654
No 85
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.13 E-value=4.5e-09 Score=136.59 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
.++|||..-...++.+...|+. .++.++.++|+|+.++|.++++.|.. +..+|+| +|..+..||++...++||.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlV-ATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVL-ATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEE-ecchHhhcccccCceEEEEc
Confidence 5799999999999999999987 47899999999999999999999987 5667766 88999999999999999998
Q ss_pred cCC----CCcCh--------------HHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000566 1339 DLW----WNPTT--------------EDQAIDRAHRIGQTRPVSVLRLTVKNT 1373 (1416)
Q Consensus 1339 Dp~----WNPa~--------------e~QAiGRvhRIGQtr~V~VyrLi~kdT 1373 (1416)
+.+ |||.. ..||.||++|. ++=..|+|+.+..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 56654 46777777776 5778889987653
No 86
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.4e-09 Score=130.79 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
+.--|||+..+...+.|+..|...|+....|+|+|+.++|+..-++|.+ +++.||+ .|.|.|-|+|=.....||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiV-AT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMV-ATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEE-EeccccCccCCCCceEEEEecC
Confidence 4557999999999999999999999999999999999999999999998 7788888 5599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEE
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~V 1365 (1416)
|=+....-|=+||++|-|..-+..+
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999887554
No 87
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.11 E-value=4.1e-09 Score=137.44 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=95.5
Q ss_pred CCCeEEEEcccHHHHHHHH----HHHHhcC----CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLE----ASLKDSS----IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe----~~L~~~g----I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~ 1331 (1416)
.+.|.|+|+.+...+..+. ..+...+ ..+..+.|++...+|.++...|+. +++.+++ ++.+.-.|+++-.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~-st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVI-ATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEe-cchhhhhceeehh
Confidence 5789999999999999987 4444445 568899999999999999999998 7888887 8899999999999
Q ss_pred cCEEEEEcCCC-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1332 ACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1332 An~VI~~Dp~W-NPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
.+.||+.-.|- .-....|+.||++|-||.-.+.+ ..-.+-++..+...
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~~ 431 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLRH 431 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhhC
Confidence 99999998876 56788999999999995544332 22266667665543
No 88
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.11 E-value=4.2e-09 Score=124.02 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
.|||||+..-.+.++++..|+...+++..|+|++++..|.....+|.+. +- .+|++|++++.|++....+.||-||||
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-es-gIL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ES-GILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-cc-ceEEecchhhccCCCCCceEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999983 33 355577999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
-+|...+.|+||..|-|-+-.
T Consensus 409 ~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 409 SDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCHHHHHHHhccccccCCCce
Confidence 999999999999999776654
No 89
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.10 E-value=3.9e-09 Score=120.92 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=98.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
...|+|||+....++|-|.--|.-.||..-.++|.-.+.+|+.+++.|+. +++++|| .|+.++.||++....||++||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEE-EechhhcCCCchhcceeeccC
Confidence 56899999999999999999998899999999999999999999999999 8899988 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
.|-|-.....|+||.+|-|.+-. -|..|.-+|
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 99999999999999999998865 333344333
No 90
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.08 E-value=8e-09 Score=122.40 Aligned_cols=122 Identities=25% Similarity=0.244 Sum_probs=102.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
...|+|||-..-.-..++.+.+.+. |++...++|.|++..|..+.++|.. .-.|+|.+|+.++.||++.+.+.||-
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcccceEEE
Confidence 3479999999888899999888764 9999999999999999999999987 44677779999999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000566 1338 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1386 (1416)
Q Consensus 1338 ~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~ 1386 (1416)
+|.|=+....+.|+||..|.+-.-+-.++ ++. +=||.|+...++|.
T Consensus 390 ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p-sEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 390 VDCPEDVDTYIHRVGRTARYKERGESLLM--LTP-SEEEAMLKKLQKKK 435 (758)
T ss_pred ecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-hhHHHHHHHHHHcC
Confidence 99999999999999999999887775543 222 34577776666663
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=4.7e-09 Score=133.59 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=85.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq---~An--- 1333 (1416)
.+..+|||+......+.|...|.+.|+++..++|.+...+++-+..+++. ..|+| +|..+|.|+++. ...
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g~VtI-ATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---GAVTI-ATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---ceEEE-EeccccCCCCCCCCcchhhhC
Confidence 67899999999999999999999999999999999875555555555544 23555 679999999984 566
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEE
Q 000566 1334 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1364 (1416)
Q Consensus 1334 --~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~ 1364 (1416)
|||.++++-+...+.|++||++|.|..-...
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9999999999999999999999999988753
No 92
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=1.9e-08 Score=119.11 Aligned_cols=123 Identities=17% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc----------------------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS----------------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1317 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~----------------------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL 1317 (1416)
...|+|||..-.++.+.=..+|... +.++.+++|+|++.+|..++..|...... +|
T Consensus 424 ~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VL 501 (708)
T KOG0348|consen 424 EKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA--VL 501 (708)
T ss_pred hhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce--EE
Confidence 3458999988887776654444321 45699999999999999999999985443 45
Q ss_pred eeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000566 1318 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1388 (1416)
Q Consensus 1318 ~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l 1388 (1416)
++|++++.||+|.....||-||||..++....||||..|+|-+-.-.. |+.....| .+...+++..+
T Consensus 502 LcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae--y~~~l~~~~~~ 568 (708)
T KOG0348|consen 502 LCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE--YVNYLKKHHIM 568 (708)
T ss_pred EehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH--HHHHHHhhcch
Confidence 588999999999999999999999999999999999999999887433 34444333 44444444433
No 93
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.03 E-value=9.5e-09 Score=132.42 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE----EEc-----CCCCcC
Q 000566 1275 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL----LLD-----LWWNPT 1345 (1416)
Q Consensus 1275 dlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI----~~D-----p~WNPa 1345 (1416)
..++..+.. |+. .-+.+++.++|+-+-+.|+. +.++||+ +|...+.|+||++-..|| .|| -.-++.
T Consensus 307 ~~l~e~v~~-Gva--fHhAGL~~~~R~~vE~~Fr~-g~ikVlv-~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~ 381 (766)
T COG1204 307 EELAELVLR-GVA--FHHAGLPREDRQLVEDAFRK-GKIKVLV-STPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVL 381 (766)
T ss_pred HHHHHHHHh-Ccc--ccccCCCHHHHHHHHHHHhc-CCceEEE-echHHhhhcCCcceEEEEeeeEEEcCCCCeEECchh
Confidence 455555543 443 36789999999999999998 8899988 779999999999655443 244 223566
Q ss_pred hHHHHHHhhhccCCC
Q 000566 1346 TEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1346 ~e~QAiGRvhRIGQt 1360 (1416)
...|-+||++|.|=.
T Consensus 382 dv~QM~GRAGRPg~d 396 (766)
T COG1204 382 DVLQMAGRAGRPGYD 396 (766)
T ss_pred hHhhccCcCCCCCcC
Confidence 778999999999843
No 94
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.03 E-value=1.4e-08 Score=132.34 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=89.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
+..+|||..-...++.+...|.. .++.+..++|+++.++|.++++.|.. +..+|+| +|..+..||++...++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEE-ecchHHhcccccCceEEEE
Confidence 36799999999999999999987 57889999999999999999999976 5666666 8899999999999999999
Q ss_pred EcCC----CCcC--------------hHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000566 1338 LDLW----WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1374 (1416)
Q Consensus 1338 ~Dp~----WNPa--------------~e~QAiGRvhRIGQtr~V~VyrLi~kdTI 1374 (1416)
++.. |+|. ...||.||++|. ++=+.|||+.+...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 4443 345666666665 57899999976543
No 95
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.02 E-value=9.5e-09 Score=122.20 Aligned_cols=118 Identities=18% Similarity=0.282 Sum_probs=98.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL---- 1337 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~---- 1337 (1416)
...|||+..+.-...|+.+|...|++..-|+++++-.+|..+-..|.. .++.+++ +|.|.+.|+++.+ +.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFPA-SQVIFEsLa 517 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVV-TTAALAAGVDFPA-SQVIFESLA 517 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCch-HHHHHHHHH
Confidence 468999999999999999999999999999999999999999999998 7788877 7899999999985 44554
Q ss_pred EcC-CCCcChHHHHHHhhhccCCCCcEEEEEEEe---------CCCHHHHHHHHH
Q 000566 1338 LDL-WWNPTTEDQAIDRAHRIGQTRPVSVLRLTV---------KNTVEDRILALQ 1382 (1416)
Q Consensus 1338 ~Dp-~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~---------kdTIEErIl~lq 1382 (1416)
|.. |.+|.-..|..||++|.|-...-.||-++- .+|=|+--+.+.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL 572 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLL 572 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHh
Confidence 443 559999999999999999877777777763 345555444443
No 96
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=1.9e-08 Score=118.18 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=99.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..|+|||.--....+-|+..|+..|+.+..++|+|.+++|.+.|..|+. ....||++ |+.+..||++..--+||+||.
T Consensus 468 ~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~Vlva-tDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 468 EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLVA-TDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEEE-eeHhhcCCCccccceeecccc
Confidence 3699999999999999999999999999999999999999999999998 66778874 599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
.-.-....|+|||..|-|-+ -..|.|+++...+
T Consensus 546 ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88888888999999999988 4567788776554
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.01 E-value=3.4e-08 Score=135.58 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=78.4
Q ss_pred CCeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec---cccccccCccc-cC
Q 000566 1261 GEKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL---KAASLGLNMVA-AC 1333 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St---kaGg~GLNLq~-An 1333 (1416)
+...|||++.... ++.|+..|...|+++..++|. |.+++++|.+ ++++|||.+. ..++.||++.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccC
Confidence 3578999987653 589999999999999999995 8999999999 8899999774 57899999997 89
Q ss_pred EEEEEcCCC---CcChHH-------------HHHHhhhccCCC
Q 000566 1334 HVLLLDLWW---NPTTED-------------QAIDRAHRIGQT 1360 (1416)
Q Consensus 1334 ~VI~~Dp~W---NPa~e~-------------QAiGRvhRIGQt 1360 (1416)
+||||+.|= +-..+. |.++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999986 444444 455999998865
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.00 E-value=3.2e-08 Score=128.93 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHH----HHHHHHHhcCCCc--cEEEeeccccccccCcc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFAR----DKAVKDFNTLPEV--SVMIMSLKAASLGLNMV 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR----~~aI~~Fn~d~~v--~VLL~StkaGg~GLNLq 1330 (1416)
.+.++|||++....+..+.+.|++.+ +.+..++|.++..+| +++++.|..++.. ..+|++|.+...||++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 46799999999999999999998764 678999999999999 5678899443332 2445688999999999
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCC
Q 000566 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1331 ~An~VI~~Dp~WNPa~e~QAiGRvhRIGQt 1360 (1416)
.++.||....+ .....||+||+||-|.+
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 56887775444 46889999999999875
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.98 E-value=1e-07 Score=123.62 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcChH
Q 000566 1271 TKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTE 1347 (1416)
Q Consensus 1271 t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~-WNPa~e 1347 (1416)
...+.-++..|+.. ..++...||.|+..+-++++.+|.+ ++..||| +|...-.||++..||++|+-+.. +--+..
T Consensus 813 V~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv-~TTIIEtGIDIPnANTiIIe~AD~fGLsQL 890 (1139)
T COG1197 813 VESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDVLV-CTTIIETGIDIPNANTIIIERADKFGLAQL 890 (1139)
T ss_pred hhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCEEE-EeeeeecCcCCCCCceEEEeccccccHHHH
Confidence 33344444444432 3456778999999999999999998 8899998 66889999999999999996654 455678
Q ss_pred HHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1348 DQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1348 ~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
-|--|||+|=. +.-+-|-|+..
T Consensus 891 yQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 891 YQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred HHhccccCCcc--ceEEEEEeecC
Confidence 89999998844 44677777664
No 100
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=5.7e-08 Score=124.37 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------- 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~-------- 1331 (1416)
.+..+|||+......+.|...|.+.||++..++|. ..+|++.|.+|.. ....|+| +|..+|.|+++.-
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~VtI-ATNmAGRGtDI~LgGn~~~~~ 504 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAVTI-ATNMAGRGTDIKLGGNPEMLA 504 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceEEE-ecccccCCcCccCCCchhhhh
Confidence 57899999999999999999999999999999996 6799999999998 5567777 6699999988652
Q ss_pred ------------------------------cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000566 1332 ------------------------------ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380 (1416)
Q Consensus 1332 ------------------------------An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~ 1380 (1416)
.=|||.-+.+=|-..+.|..||++|.|..-....|. |+|+.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 505 AALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 468999999999999999999999999988755432 45555554
No 101
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.96 E-value=1.6e-08 Score=119.09 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
.++|||.+-...+.-+.-.|--.|+++..++|++++.||-.+++.|++ .++.||| +|+.++.||++...-+||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLi-aTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLI-ATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEE-EechhhccCCccceeEEEeccCc
Confidence 689999999999999999999999999999999999999999999998 8899998 66999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCC
Q 000566 1342 WNPTTEDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr 1361 (1416)
-.-.....|+||..|-|..-
T Consensus 505 ~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred hhHHHHHHHhhhhhhcccCc
Confidence 88888899999998888753
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=4.7e-08 Score=124.86 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=96.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------- 1330 (1416)
.|..||||+......+.|...|...|+++..+++.+...+|+.+.++|+. +. |+| +|..+|.|+++.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtI-ATnmAGRGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTI-ATNMAGRGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEE-ecCCcCCCcceecCCchHHhh
Confidence 68999999999999999999999999999999999999999999999998 33 555 679999998865
Q ss_pred ----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1331 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1331 ----------------------------~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
..=|||.-+.+=+-.++.|..||++|.|..-.-..|. |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r~ 597 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMRI 597 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHHH
Confidence 2358999999999999999999999999987643332 556665543
No 103
>COG4889 Predicted helicase [General function prediction only]
Probab=98.93 E-value=2e-08 Score=123.40 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=60.4
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhc-C-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000566 1285 SIQYRRLDGTMSVFARDKAVKDFNT-L-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1285 gI~~~rldGsms~~qR~~aI~~Fn~-d-~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
.+...-+||.|+..+|.+.+..=+. . .+++|| -..++.++|++..+-+-|||++|--.-....||+|||-|.---+.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl-SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKIL-SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheee-ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 3456678999999999666554433 2 345554 478999999999999999999998777788899999999755443
No 104
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.92 E-value=2.1e-07 Score=109.38 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=90.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
..+|+|||...-...++....|... .+.++.++|.|+.++|.++++.|.+ ..-.||+ +|+.++.||++...+.||.
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~-~~~~vl~-~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK-LSNGVLF-CTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh-ccCceEE-eehhhhccCCCCCceEEEe
Confidence 4589999998888888888887664 7889999999999999999999998 3334444 8899999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEE
Q 000566 1338 LDLWWNPTTEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1338 ~Dp~WNPa~e~QAiGRvhRIGQtr~V~V 1365 (1416)
+|||-+|.....|.||..|.|..-.-.|
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEE
Confidence 9999999999999999999998876444
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=4.8e-07 Score=116.23 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An------ 1333 (1416)
.+..+|||+......+.|...|...||++..|++ ...+|++.|.+|.. ....|+| +|..+|.|+++.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtI-ATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTI-ATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEE-eccCcCCCCCcCCccchhhhC
Confidence 6789999999999999999999999999999997 47899999999998 5566777 669999999988333
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000566 1334 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1382 (1416)
Q Consensus 1334 --~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq 1382 (1416)
+||..+.+-+...+.|++||++|.|..-....+ + |.|+.++.+-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~f 718 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRLF 718 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHhh
Confidence 458889999999999999999999998764222 1 5666666543
No 106
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.83 E-value=2.3e-08 Score=109.72 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 728 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 728 (1416)
.++++|++++..+.+ .+..+++-..|.|||++.+..++.....
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~------------------------------ 63 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDP------------------------------ 63 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 478999999998885 2568999999999999854433221100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-cccc
Q 000566 729 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL 806 (1416)
Q Consensus 729 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd-~~~L 806 (1416)
........+|||||.. ++.||...+.++.. ...+++..++|...... ...+
T Consensus 64 --------------------------~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 64 --------------------------SPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred --------------------------hcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 0000113589999985 78999999987754 34688888888654322 2223
Q ss_pred -cCCCEEEEechhhhc
Q 000566 807 -AKFDVVITTYSIVSM 821 (1416)
Q Consensus 807 -~~~DVVITTY~~l~~ 821 (1416)
...+|+|+|.+.+..
T Consensus 117 ~~~~~iiv~T~~~l~~ 132 (203)
T cd00268 117 KRGPHIVVATPGRLLD 132 (203)
T ss_pred cCCCCEEEEChHHHHH
Confidence 378999999887754
No 107
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.72 E-value=1.2e-06 Score=116.99 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCc---EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQ---YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~---~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
..++|||..-...++.+...|+..+++ +..++|+++.++|.++++. .+..+|+| +|..+..||++....+||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIV-ATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVL-ATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEE-eccHHhhccccCcceEEEE
Confidence 468999999999999999999988765 5689999999999988664 34556555 8899999999999999999
Q ss_pred Ec---------------CCCCcC---hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1338 LD---------------LWWNPT---TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1338 ~D---------------p~WNPa---~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
++ ++-.|. ...||.||++|. ++=..|+|+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 74 343443 455555555555 577788999876443
No 108
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.70 E-value=1.2e-06 Score=111.01 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh----------HHHHHHhhhccCCC
Q 000566 1291 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT----------EDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1291 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~----------e~QAiGRvhRIGQt 1360 (1416)
-+.+|...+|+.+=+.|.. +.++||. +|...+-|+||.+-..+|-=.+.|++.. ..|-+||++|..=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~-G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKE-GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhc-CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 4678999999999999998 7888888 6799999999998777776677777764 67999999998755
Q ss_pred CcEEEEEEEeCCCHH
Q 000566 1361 RPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1361 r~V~VyrLi~kdTIE 1375 (1416)
..-..+-+...++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 554555555555544
No 109
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.62 E-value=2.5e-07 Score=105.93 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=93.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
...|||++-..++..|+..|...|.++..++|.+...+|.+++++|+. +..+||| +|.+.+.|++.+..+.||+||+|
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLi-tTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLI-TTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEE-EechhhcccccceEEEEEecCCc
Confidence 467999999999999999999999999999999999999999999998 7778888 77999999999999999999998
Q ss_pred C------CcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1342 W------NPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1342 W------NPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
- .+.+...||||.+|+|.+-- +++|+-.
T Consensus 409 ~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~~ 442 (477)
T KOG0332|consen 409 VKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVDD 442 (477)
T ss_pred cccCCCCCHHHHHHHhcccccccccce--EEEeecc
Confidence 4 34577899999999998753 3335543
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.61 E-value=1.3e-07 Score=100.29 Aligned_cols=158 Identities=22% Similarity=0.277 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 731 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 731 (1416)
|+|.+++.-+.+. +-.|+.-.+|.|||..++-.++.....
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7999999988832 226899999999999987555431100
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-C-cccc-c
Q 000566 732 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-D-PCEL-A 807 (1416)
Q Consensus 732 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-d-~~~L-~ 807 (1416)
. ..+.+||+||.. ++.|=.+++.+++.. ..+++..++|..... + ...+ .
T Consensus 42 -------------------------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 42 -------------------------G-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp -------------------------T-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred -------------------------C-CCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 0 112589999975 888999999888763 457888888765422 1 1223 4
Q ss_pred CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccc
Q 000566 808 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 887 (1416)
Q Consensus 808 ~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL~~ 887 (1416)
..+|+|+|++.|...+.. . ...+.
T Consensus 95 ~~~ilv~T~~~l~~~~~~-----------------~--------------------------------------~~~~~- 118 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN-----------------G--------------------------------------KINIS- 118 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT-----------------T--------------------------------------SSTGT-
T ss_pred cccccccCcchhhccccc-----------------c--------------------------------------ccccc-
Confidence 699999999998643210 0 00122
Q ss_pred cCccEEEEcCccccCCh--hhHHHHHHHhc---ccCcEEEeecccCCCChHH
Q 000566 888 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDD 934 (1416)
Q Consensus 888 i~W~rVIlDEAH~IKN~--~S~~skal~~L---~ak~RwlLTGTPIqN~l~D 934 (1416)
...+||+||+|.+... .......+..+ ...+.+++||||- ..+++
T Consensus 119 -~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 119 -RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp -TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred -cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 2578999999998652 22233333333 2366899999997 55544
No 111
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.59 E-value=6.5e-07 Score=102.54 Aligned_cols=246 Identities=20% Similarity=0.208 Sum_probs=143.9
Q ss_pred CCchHHHHHHHHHHHhhccCC---CCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000566 649 PLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 725 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~---~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 725 (1416)
.|=.-|+++|.+..++-...+ .-.|-+|+|-+|.||-.++-++|..+...
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------------------------- 89 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------------------------- 89 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------------------------
Confidence 366789999999887655322 23677999999999999999998754211
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 000566 726 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 805 (1416)
Q Consensus 726 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~ 805 (1416)
.+.++.-|-+...|..-=++.+... . ...+.+.....-+... . .
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DI-G-~~~i~v~~l~~~~~~~-~-~ 133 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDI-G-ADNIPVHPLNKFKYGD-I-I 133 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHh-C-CCcccceechhhccCc-C-C
Confidence 1223455555666765555555432 2 1233343333322211 1 1
Q ss_pred ccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcc
Q 000566 806 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 885 (1416)
Q Consensus 806 L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL 885 (1416)
-.+..||.+||.+|..+..+. .++ +.+.+ .+.++ +
T Consensus 134 ~~~~GvlF~TYs~L~~~~~~~---------------------------~~~-------------~sRl~-ql~~W----~ 168 (303)
T PF13872_consen 134 RLKEGVLFSTYSTLISESQSG---------------------------GKY-------------RSRLD-QLVDW----C 168 (303)
T ss_pred CCCCCccchhHHHHHhHHhcc---------------------------CCc-------------cchHH-HHHHH----H
Confidence 125689999999997642110 000 00000 00000 0
Q ss_pred cccCc-cEEEEcCccccCChhh------HHHHHHHhc----ccCcEEEeecccCCCChHHHHhhhhhcc----CCCccch
Q 000566 886 AKVGW-FRVVLDEAQSIKNHRT------QVARACWGL----RAKRRWCLSGTPIQNAIDDLYSYFRFLR----YDPFAVY 950 (1416)
Q Consensus 886 ~~i~W-~rVIlDEAH~IKN~~S------~~skal~~L----~ak~RwlLTGTPIqN~l~DLyslL~FL~----p~~f~~~ 950 (1416)
. -.| .+||+||||..||..+ ++..++..| ...+.+-.|||... .+..|--+-+ |. .-+|.+.
T Consensus 169 g-~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~R-LGLWG~gtpf~~~ 245 (303)
T PF13872_consen 169 G-EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSR-LGLWGPGTPFPDF 245 (303)
T ss_pred h-cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeee-ccccCCCCCCCCH
Confidence 0 111 2799999999999654 666776655 33467889999974 3444432322 22 1356777
Q ss_pred HHHHhhhccCCCCCchhhHHHHHHHH--hHhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 000566 951 KSFCSMIKVPISKNPVKGYKKLQAVL--KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 1019 (1416)
Q Consensus 951 ~~F~~~~~~pi~k~~~~~~~~L~~lL--~~~mLRRtK~dVldg~pii~LPpk~e~vv~v~lS~eEr~~Y~~ 1019 (1416)
.+|...++ ++....++-+-.-| ...+++|... +-....+++.+++++++.++|+.
T Consensus 246 ~~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~LS----------f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 246 DDFLEAME----KGGVGAMEMVAMDLKARGMYIARQLS----------FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHHH----hcCchHHHHHHHHHHhcchheeeecc----------cCCceEEEEEecCCHHHHHHhcC
Confidence 88876654 23333344333333 3456777653 44567888999999999999974
No 112
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=5.4e-06 Score=104.24 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=86.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------- 1330 (1416)
.+..|||.+.....-+.|...|.+.||++..++..-. ++-.++|.+=-. .-.|.| +|.-+|.|-++.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~--~gaVTI-ATNMAGRGTDIkLg~~~~~~~ 501 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK--YGAVTV-STQMAGRGTDIRLGGSDEADR 501 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC--CCcEEE-EecCCCCccCeecCCCcccch
Confidence 6889999999999999999999999999999998743 333344443222 234555 667777886654
Q ss_pred ------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 000566 1331 ------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1383 (1416)
Q Consensus 1331 ------~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~ 1383 (1416)
..=|||.-+.+=+-..+.|..||++|.|..-....|. |+|+.++.+-.
T Consensus 502 ~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 502 DRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred HHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcC
Confidence 3458999999999999999999999999987744432 56666665443
No 113
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.57 E-value=1.7e-07 Score=106.98 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=105.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
..-+||||+.-..-.|-|.++|--.|+..+.++|+-.+++|..+|+.|+. +...||+ .|++++-||+++...|||+||
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLV-ATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLV-ATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEE-EecchhccCCCccchhhccCC
Confidence 34689999999999999999999999999999999999999999999998 6677887 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH----HHHHHHHH
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA----LQQKKREM 1388 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~----lq~~K~~l 1388 (1416)
.+-.-.....||||.+|-|.+-- -..||-+++-|..+++ +++.|+++
T Consensus 498 MP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDLK~LL~EakQ~v 548 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDLKHLLQEAKQEV 548 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHHHHHHHHhhccC
Confidence 88776677788888888887764 3346777776666655 45666653
No 114
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.54 E-value=1.9e-06 Score=110.23 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=91.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
..|+|||++--.-++.|.+.|.+.|+....++|+.+..+|...+++|++ +.+. ||+.|...+.||+...-..||+||.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~-LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVN-LLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCce-EEEehhhhhcccccccceEEEEccc
Confidence 5799999999999999999999999999999999999999999999998 4444 5557799999999999999999998
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
+=.......|.||..|-|.+- .-|.|+..
T Consensus 691 pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred chhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 866666777777777777776 44455555
No 115
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.53 E-value=1e-05 Score=108.62 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=85.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
..++|||..-...++.+...|...+ +.+..++|.++.++|.++++.+ +..+|+ ++|..+..||++....+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIV-LATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIV-LATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEE-EeccHHHhccccCCeeEEEe
Confidence 3589999999999999999998764 4578899999999999885433 334554 58899999999999999998
Q ss_pred EcCC----CCc--------------ChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1338 LDLW----WNP--------------TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1338 ~Dp~----WNP--------------a~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
++.. ||| +...||.||++|.| +-.+|+|+++...+
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 7732 222 35678888888886 66789999876544
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.53 E-value=7.6e-06 Score=106.76 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhc---CCCccEEEeeccccccccCccccCEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMSLKAASLGLNMVAACHVL 1336 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~---d~~v~VLL~StkaGg~GLNLq~An~VI 1336 (1416)
.+.|++|-++-...+.-++..|+..+.++..||+.+....|.+.++...+ ..+..| +++|.+.-.|+++. .+.+|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~I-vVaTQVIEagvDid-fd~mI 516 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFI-VVATQVIEAGVDID-FDVLI 516 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeE-EEEeeEEEEEeccc-cCeee
Confidence 57899999999999999999999987789999999999999999986653 234444 55889999999998 45554
Q ss_pred EEcCCCCcChHHHHHHhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000566 1337 LLDLWWNPTTEDQAIDRAHRIG--QTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390 (1416)
Q Consensus 1337 ~~Dp~WNPa~e~QAiGRvhRIG--Qtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~ 1390 (1416)
- |+. -....+||.||++|-| ....++|+...-......+.++....+.....
T Consensus 517 T-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 517 T-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred e-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccc
Confidence 4 432 2367899999999999 45568888777777777777666666555443
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.48 E-value=9.2e-07 Score=113.15 Aligned_cols=117 Identities=24% Similarity=0.295 Sum_probs=97.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.++|||+.....++.|...|...|+++..++|.++..+|.++++.|+. +.+.||| ++...+.|+++..++.||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV-~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEE-EcChhcCCeeeCCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 7788876 669999999999999999999
Q ss_pred -----CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC--HHHHHHHH
Q 000566 1340 -----LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT--VEDRILAL 1381 (1416)
Q Consensus 1340 -----p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdT--IEErIl~l 1381 (1416)
.+=+.....|++||+.|.. .. .|+.|+...| +...|.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 3446778899999999963 22 3455555544 44444443
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.48 E-value=0.00023 Score=85.71 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=102.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+++++|-+=-..|++-|..+|.+.||++..+|.....-+|..+|.+.+. +.+.||+ -....-+||+|..++-|.++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLV-GINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEE-eehhhhccCCCcceeEEEEee
Confidence 67999999999999999999999999999999999999999999999998 8888888 578899999999999999999
Q ss_pred CC-----CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000566 1340 LW-----WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1385 (1416)
Q Consensus 1340 p~-----WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K 1385 (1416)
.. -+-...+|-|||+.|=-.- .|..|-=.+-++++..|-+..+++
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHHH
Confidence 76 4677899999999994332 244443334456666666655443
No 119
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.46 E-value=1.7e-05 Score=97.55 Aligned_cols=86 Identities=27% Similarity=0.340 Sum_probs=66.5
Q ss_pred HHHhcCCCccEEEeeccccccccCccccCEE--------EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000566 1305 KDFNTLPEVSVMIMSLKAASLGLNMVAACHV--------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376 (1416)
Q Consensus 1305 ~~Fn~d~~v~VLL~StkaGg~GLNLq~An~V--------I~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEE 1376 (1416)
++|-. ++..|-|+| .|++.|+.||.-.+| |-+++||....-+|-+||.||-.|..-...+.||.+=-=|.
T Consensus 851 qrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 851 QRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred hhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 45665 777888888 999999999965444 55999999999999999999999998766666776655566
Q ss_pred HHHHHHHHHHHHHHHH
Q 000566 1377 RILALQQKKREMVASA 1392 (1416)
Q Consensus 1377 rIl~lq~~K~~l~~~~ 1392 (1416)
|...+..++.+-..++
T Consensus 929 RFAS~VAKRLESLGAL 944 (1300)
T KOG1513|consen 929 RFASIVAKRLESLGAL 944 (1300)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7666666666555433
No 120
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.37 E-value=1.1e-05 Score=93.79 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=74.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH------------HHHhc--CCCccEEEeecccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAV------------KDFNT--LPEVSVMIMSLKAASL 1325 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI------------~~Fn~--d~~v~VLL~StkaGg~ 1325 (1416)
.+.++||.++-..++|+||.+|...++.|.|+.|.+-..+....- ..... ...+.|.|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 568999999999999999999999999999999986555444332 01111 1356677777554433
Q ss_pred ----ccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 000566 1326 ----GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1384 (1416)
Q Consensus 1326 ----GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~ 1384 (1416)
.++-...+.||-+|+.+++....-..-|.+.-.+ +.+-|+||++.+|+|--++.....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 2334467899999999999876654444443333 889999999999999888876663
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.36 E-value=2.5e-06 Score=109.83 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=92.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+.++|||+.....++.|...|...|+++..++|.++..+|..+++.|+. +.+.|+| ++...+.|+++..++.||++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV-~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEE-EeCHHhCCccccCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 6777776 669999999999999999999
Q ss_pred C-----CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1340 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1340 p-----~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
. +-++....|++||++| +. .=.++.|+..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR-~~--~G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAAR-NV--NGKVILYADK 556 (652)
T ss_pred CcccccCCCHHHHHHHhccccC-CC--CCEEEEEecC
Confidence 6 3477889999999999 33 2235555553
No 122
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.34 E-value=0.00038 Score=79.91 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=76.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
.+.-++||..-..+++.+...|+.. + .+...++.. ...|.+.|++|++ +.+.+|| +|.....|+.+...+..++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~-G~~~lLi-TTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRD-GKITLLI-TTTILERGVTFPNVDVFVL 379 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHc-CceEEEE-EeehhhcccccccceEEEe
Confidence 5688999999999999999999653 2 222334433 2578999999998 7777666 7799999999999998888
Q ss_pred Ec--CCCCcChHHHHHHhhhccCCC
Q 000566 1338 LD--LWWNPTTEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1338 ~D--p~WNPa~e~QAiGRvhRIGQt 1360 (1416)
=. +.++-+...|--||++|---.
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcC
Confidence 43 448899999999999996443
No 123
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.33 E-value=8e-05 Score=97.02 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000566 1333 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1386 (1416)
Q Consensus 1333 n~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~ 1386 (1416)
++||+|||.-..-+..|. -|++|.|.. +.||.|+.++|+||.-+....+|.
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r~--~rVyfL~y~~S~EEq~yl~sirrE 528 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLRP--LRVYFLYYGGSIEEQRYLTSLRRE 528 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCCC--cEEEEEEECCcHHHHHHHHHHHHH
Confidence 899999997444344341 255555543 899999999999997555444443
No 124
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.30 E-value=4.7e-07 Score=101.64 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=93.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
...||||+.+...++|+..+.+.|+....++..|.++.|.++..+|.+ +.++.|+.| +..-.|++.|+.|.||++|.+
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct-DL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT-DLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh-hhhhcccccceeeEEEecCCC
Confidence 578999999999999999999999999999999999999999999999 889999955 999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCC
Q 000566 1342 WNPTTEDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr 1361 (1416)
-|+.....||||.+|.|-.-
T Consensus 401 k~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred CCHHHHHHHccCCccCCCcc
Confidence 99999999999999999754
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=0.00034 Score=90.62 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-HHHHHHhcCCCccEEEeeccccccccCcc--------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPEVSVMIMSLKAASLGLNMV-------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-~aI~~Fn~d~~v~VLL~StkaGg~GLNLq-------- 1330 (1416)
.+..|||-+.....-+.|...|.+.||++..++... .+++ ++|..=-. .-.|.| +|.-+|.|-++.
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~--~~~Ea~iia~AG~--~g~VTI-ATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN--HAQEAEIIAGAGK--LGAVTV-ATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch--hhhHHHHHHhcCC--CCcEEE-eeccccCCcccccCchHHhc
Confidence 678999999999999999999999999999998873 3444 34432222 234555 667778886654
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1331 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1331 ~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
..=|||.-+.+-|...+.|..||++|.|..-....+. |+|+.++.+
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 3458999999999999999999999999987643322 566666654
No 126
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.28 E-value=2.5e-06 Score=97.48 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=95.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
...-++||.|-+.+..+|...|+..+++.+.+++-|++++|-.++.+|+. +.++||| .|++++.||+.....-||++|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~ili-aTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILI-ATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEE-EechhhcCCCCCceeEEEecC
Confidence 45789999999999999999999999999999999999999999999998 6788888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
.|-.|...+.|+||..|-|..-.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999998765
No 127
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.27 E-value=2.2e-06 Score=97.92 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCccEEEeeccccccccCcccc-------CEE-EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000566 1302 KAVKDFNTLPEVSVMIMSLKAASLGLNMVAA-------CHV-LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1373 (1416)
Q Consensus 1302 ~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~A-------n~V-I~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdT 1373 (1416)
...+.|++ ++..|+|+| +||+.|+.|++- -+| |.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56679998 688999998 999999999953 334 67999999999999999999999999866666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Q 000566 1374 VEDRILALQQKKREMVASAFGEDE 1397 (1416)
Q Consensus 1374 IEErIl~lq~~K~~l~~~~~g~d~ 1397 (1416)
.|.|......+|.+-..++...+.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999999999988876654443
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.20 E-value=6e-05 Score=97.21 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------- 1330 (1416)
.+..|||-+.....-+.|...|...||++-.++.... ++++.|-+ +....-.|.| +|.-+|.|-++.
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTI-ATNMAGRGTDIkLg~n~~~~~ 523 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTI-ATNMAGRGTDILLGGNWEVEV 523 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEE-eccCCCCCCCEecCCchHHHH
Confidence 6899999999999999999999999999988887643 44443333 2212344555 567777886653
Q ss_pred ----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1331 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1331 ----------------------------~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
..=|||.-+.+=|-.++.|..||++|.|..-....|. |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SlED~Lmr~ 597 (913)
T PRK13103 524 AALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDSLMRI 597 (913)
T ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHh
Confidence 3458999999999999999999999999987744432 345555543
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.12 E-value=0.00027 Score=90.53 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An------ 1333 (1416)
.+..|||.+......+.|...|.+.||++..++... .+|++.|-. +......|.| +|..+|.|-++.-..
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTI-ATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITI-ATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEE-ecccccCCcCccCchhHHHcC
Confidence 678999999999999999999999999999998873 345544443 3312234555 668888887766433
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1334 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1334 --~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
|||..+.+=+-..+.|..||++|.|..-....|- |+|+.++.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 9999999999999999999999999987744432 555555543
No 130
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=9.3e-06 Score=94.24 Aligned_cols=113 Identities=20% Similarity=0.316 Sum_probs=100.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
...+||++..+-++.|...|..++++...++|.|...+|..+++.|+. +..+||| ++...+.|++++..+-||+||+|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlI-ttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEe-eccccccccchhhcceeeeeccc
Confidence 678999999999999999999999999999999999999999999999 7889988 66999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~ 1380 (1416)
=|......|+||.+|.|.+- .+..++++. +++++.
T Consensus 342 ~~~~~yihR~gr~gr~grkg--~~in~v~~~--d~~~lk 376 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKG--VAINFVTEE--DVRDLK 376 (397)
T ss_pred cchhhhhhhcccccccCCCc--eeeeeehHh--hHHHHH
Confidence 99999999999999999774 445566655 344443
No 131
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.01 E-value=1.7e-05 Score=96.25 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=91.0
Q ss_pred eEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1263 KAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1263 KvIVFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
.+|||-|...-...|...| .-.+|.+-.++|..+..+|+..+++|+. +.+.||+ .|...+.|+++..++.||+||.+
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLi-cTdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLI-CTDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEE-ehhhhhccccccCcceEEecCCC
Confidence 6899999999999999999 6779999999999999999999999999 8899998 66999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
=.-.....+|||.+|-|+.-.
T Consensus 467 ~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred chhHHHHHHhhccCCCCCCcc
Confidence 888889999999999998765
No 132
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.0003 Score=90.17 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=62.6
Q ss_pred CCeEEEEccc---HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccc---cccccCcc-ccC
Q 000566 1261 GEKAIVFSQW---TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA---ASLGLNMV-AAC 1333 (1416)
Q Consensus 1261 ~~KvIVFSq~---t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~Stka---Gg~GLNLq-~An 1333 (1416)
|.-.|||.+- ...++.|+.+|+.+|+....++.. +.+.++.|.. +++.||+....- .=.||+|. ..-
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEecccccceeecCCchhhee
Confidence 4567999998 889999999999999999888664 3788999998 899999865333 34699996 889
Q ss_pred EEEEEcCC
Q 000566 1334 HVLLLDLW 1341 (1416)
Q Consensus 1334 ~VI~~Dp~ 1341 (1416)
++||+..|
T Consensus 409 YaIF~GvP 416 (1187)
T COG1110 409 YAVFYGVP 416 (1187)
T ss_pred EEEEecCC
Confidence 99999987
No 133
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.83 E-value=0.00029 Score=89.23 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=56.5
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-E---c----CCCCcChHHHHHHhhhccCCCCc
Q 000566 1291 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-L---D----LWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1291 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~-~---D----p~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
-||+.=+--++-+---|+. +=++||+ +|...+-|+|+.+-+.||- + | -..+|.-..|.-||++|-|=...
T Consensus 636 HH~GlLPivKE~VE~LFqr-GlVKVLF-ATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQR-GLVKVLF-ATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred hcccchHHHHHHHHHHHhc-CceEEEe-ehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 4666655555555556777 7788888 6699999999997766653 1 1 12589999999999999997766
Q ss_pred EEEEEEEeCCC
Q 000566 1363 VSVLRLTVKNT 1373 (1416)
Q Consensus 1363 V~VyrLi~kdT 1373 (1416)
-+|.. +.++.
T Consensus 714 GTVii-~~~~~ 723 (1248)
T KOG0947|consen 714 GTVII-MCKDS 723 (1248)
T ss_pred ceEEE-EecCC
Confidence 44443 34433
No 134
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.83 E-value=0.0009 Score=86.97 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-----EcCC---C---CcChHHHHHHh
Q 000566 1285 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-----LDLW---W---NPTTEDQAIDR 1353 (1416)
Q Consensus 1285 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~-----~Dp~---W---NPa~e~QAiGR 1353 (1416)
.+.|..-+.+|++.+|+..-+-|.+ +.++||+ ||...+-|+||.+ .+||+ |||. | .|-...|..||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~-g~iqvlv-statlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD-GHIQVLV-STATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc-CceeEEE-eehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 3566778999999999999999987 8899998 8899999999985 55555 5554 4 45577899999
Q ss_pred hhccCC
Q 000566 1354 AHRIGQ 1359 (1416)
Q Consensus 1354 vhRIGQ 1359 (1416)
++|.+-
T Consensus 684 agrp~~ 689 (1674)
T KOG0951|consen 684 AGRPQY 689 (1674)
T ss_pred cCCCcc
Confidence 999863
No 135
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0015 Score=84.09 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=70.0
Q ss_pred HHHHHHHhc--CCcEEecCCCCCHHH--HHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCcC---
Q 000566 1276 LLEASLKDS--SIQYRRLDGTMSVFA--RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNPT--- 1345 (1416)
Q Consensus 1276 lLe~~L~~~--gI~~~rldGsms~~q--R~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~---WNPa--- 1345 (1416)
.|++.|+.. +.+++++|+.++... -+.+++.|.+ ++..||| -|.-..-|+|+....-|.++|.+ .+|.
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN-GEADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC-CCCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 344444432 677888888766533 4678999998 8888888 55889999999999998887755 2333
Q ss_pred ------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1346 ------TEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1346 ------~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
...|..||++|-+-.-.|.+-.+....
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 456999999998777777776666554
No 136
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.64 E-value=5.7e-05 Score=90.64 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=89.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
-+.+.|||++..+-+.-|.-+|...+|+...++..|.+++|-+-+++|.+.+ ..+|+.|++++.||+++...|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEEEee
Confidence 4578999999999999999999999999999999999999999999999843 33455779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCC
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQ 1359 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQ 1359 (1416)
.|-.......|-||..|-+.
T Consensus 540 VPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred cCCccceeEecccccccccC
Confidence 99999999999999999764
No 137
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.61 E-value=0.013 Score=76.66 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=84.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--------c
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--------~ 1331 (1416)
.+..|||-+.....-++|.+.|...||++-+++... .++++.|-+=.- ..-.|-| +|.-+|.|-++. .
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~--h~~EAeIVA~AG-~~GaVTI-ATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKL--HQKEAEIVAEAG-QPGTVTI-ATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccc--hhhHHHHHHhcC-CCCcEEE-eccCcCCCcCcccchhhHHcC
Confidence 789999999999999999999999999998888774 344443333222 1234566 556677776654 4
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000566 1332 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1381 (1416)
Q Consensus 1332 An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~l 1381 (1416)
.=|||.-+.+=+...+.|..||++|.|..-....|. |+|+.++.+
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr~ 747 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMRL 747 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHHh
Confidence 578999999999999999999999999987644432 555555543
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.59 E-value=0.01 Score=76.09 Aligned_cols=73 Identities=25% Similarity=0.223 Sum_probs=61.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc-CCCCcChHHHHHHhhhccCCCCcEEE
Q 000566 1291 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD-LWWNPTTEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1291 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D-p~WNPa~e~QAiGRvhRIGQtr~V~V 1365 (1416)
-+.+++...|..+---|+. +...||+ +|...+.|+|+.+-..|+.-| +..||....|+-||++|-|=..--+|
T Consensus 968 HHaglNr~yR~~VEvLFR~-g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV 1041 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQ-GHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNV 1041 (1330)
T ss_pred cccccchHHHHHHHHHhhc-CceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccce
Confidence 4678899999988888988 8888888 679999999999888888876 67899999999999999985544333
No 139
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.46 E-value=0.004 Score=71.81 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=76.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
.+..-|||+-...-.+.+...|+.+||..--|+..|-+.+|.-+-+.|-. ++++|++.+ -+.|.|++-.....||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqvivat-vafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVAT-VAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEEE-eeecccCCCCCeeEEEecc
Confidence 45566888888888899999999999999999999999999999888887 889999854 8899999999999999998
Q ss_pred CCCCcChHHH
Q 000566 1340 LWWNPTTEDQ 1349 (1416)
Q Consensus 1340 p~WNPa~e~Q 1349 (1416)
++-.-...-|
T Consensus 394 l~ksienyyq 403 (695)
T KOG0353|consen 394 LPKSIENYYQ 403 (695)
T ss_pred cchhHHHHHH
Confidence 8876666667
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.41 E-value=0.00048 Score=83.26 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=84.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
+|.-|+-||.- -+-.+...++++|.. .++|+|+.+++-|.+-...||+. +++.|||+| +|.|-||||- ..||||
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEE
Confidence 78889999864 344566677777766 99999999999999999999984 578999976 9999999995 578999
Q ss_pred EcCC-CC--------cChHHHHHHhhhccCCCCc-EEEEEEEeC
Q 000566 1338 LDLW-WN--------PTTEDQAIDRAHRIGQTRP-VSVLRLTVK 1371 (1416)
Q Consensus 1338 ~Dp~-WN--------Pa~e~QAiGRvhRIGQtr~-V~VyrLi~k 1371 (1416)
+++. +| -....|--||++|.|.+-+ -.|..|..+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 8876 22 2345699999999998766 444444433
No 141
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.39 E-value=0.00037 Score=81.42 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=85.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1336 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI 1336 (1416)
.-.|.|||+.-..-.|-|++++.+.| +..+.++|...+.+|.+-++.|+. .+++.|| .|+.++.||+++..-.||
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkfli-ctdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLI-CTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEE-EehhhhccccccCCceEE
Confidence 56899999999999999999998764 567889999999999999999998 7777777 669999999999999999
Q ss_pred EEcCCCCcChHHHHHHhhhcc
Q 000566 1337 LLDLWWNPTTEDQAIDRAHRI 1357 (1416)
Q Consensus 1337 ~~Dp~WNPa~e~QAiGRvhRI 1357 (1416)
++.++-.-.....||||++|-
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999998888888888877763
No 142
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.37 E-value=0.0037 Score=77.91 Aligned_cols=114 Identities=22% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc---------------------------------------EEecCCCCCHHHH
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQ---------------------------------------YRRLDGTMSVFAR 1300 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~---------------------------------------~~rldGsms~~qR 1300 (1416)
....|||||-...-.+.++..+.+..+. ...-+++.-+--+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlK 461 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILK 461 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHH
Confidence 6678999997777666655554432111 1112444434434
Q ss_pred HHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec----CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1301 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1301 ~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~----~D----p~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+-+---|+. +=++||. .|...+-|||+.+-..|+- +| -|-...-.+|.-||++|-|-...-.|. ++...
T Consensus 462 E~IEILFqE-GLvKvLF-ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivI-lmiDe 538 (1041)
T KOG0948|consen 462 EVIEILFQE-GLVKVLF-ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVI-LMIDE 538 (1041)
T ss_pred HHHHHHHhc-cHHHHHH-hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEE-EEecC
Confidence 434345665 6677777 5699999999997666654 22 234566788999999999976653443 34444
Q ss_pred CHHH
Q 000566 1373 TVED 1376 (1416)
Q Consensus 1373 TIEE 1376 (1416)
.+|.
T Consensus 539 km~~ 542 (1041)
T KOG0948|consen 539 KMEP 542 (1041)
T ss_pred cCCH
Confidence 4443
No 143
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.37 E-value=0.0008 Score=69.77 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=24.3
Q ss_pred cccCccEEEEcCccccCChhhHHHHHH-Hhc-cc--CcEEEeecccCC
Q 000566 886 AKVGWFRVVLDEAQSIKNHRTQVARAC-WGL-RA--KRRWCLSGTPIQ 929 (1416)
Q Consensus 886 ~~i~W~rVIlDEAH~IKN~~S~~skal-~~L-~a--k~RwlLTGTPIq 929 (1416)
...+|++||+||||.. ++.|-..+.. ..+ .. ...+++||||--
T Consensus 92 ~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp CTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 3467999999999974 3444433322 222 22 367999999953
No 144
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.32 E-value=0.00042 Score=91.19 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=97.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~D 1339 (1416)
+..-.||||....+.+.+...|+..|+....|+++|+..+|+.+.++|.. ++++|++++ =|.|-|+|-...--||+|.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivAT-VAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVAT-VAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEEE-eeccCCCCCCceeEEEECC
Confidence 77899999999999999999999999999999999999999999999999 668888854 8999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1366 (1416)
Q Consensus 1340 p~WNPa~e~QAiGRvhRIGQtr~V~Vy 1366 (1416)
+|=+-...-|.+||++|-|+......|
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEe
Confidence 999999999999999999999875544
No 145
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=9e-05 Score=81.08 Aligned_cols=57 Identities=33% Similarity=0.722 Sum_probs=47.1
Q ss_pred hhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhh
Q 000566 1094 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFS 1150 (1416)
Q Consensus 1094 ~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~ 1150 (1416)
.+...|.||.|...+||+|.|||+||=-||-.|+....+.--+++|+..+..++++.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 445789999999999999999999999999999977555322247999988877764
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.18 E-value=0.022 Score=74.12 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCH-HHHHHHHHHHhcCCCccEEEeecccccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV-FARDKAVKDFNTLPEVSVMIMSLKAASLGL 1327 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~-~qR~~aI~~Fn~d~~v~VLL~StkaGg~GL 1327 (1416)
.+..|||-+.....-+.|...|...||++..++..... ++-.++|.+=- ..-.|.| +|.-+|.|-
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG--~~G~VTI-ATNMAGRGT 488 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAG--RKGSITI-ATNMAGRGT 488 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcC--CCCcEEE-eccccCCCc
Confidence 68899999999999999999999999999999987322 33344554422 2234555 556666663
No 147
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.15 E-value=0.0009 Score=78.96 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec--------------------
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL-------------------- 1320 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St-------------------- 1320 (1416)
..|+|||.+-.+.---|.-.|+.-||+.+.+.|.++...|.-+|++||. +-+.++|+|-
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccC
Confidence 3699999999999999999999999999999999999999999999998 6677777654
Q ss_pred ----c-c---------cccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000566 1321 ----K-A---------ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372 (1416)
Q Consensus 1321 ----k-a---------Gg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kd 1372 (1416)
+ + .+.|++++..+.||++|.|-++...+.|+||..|-|.+-.+ .-|+...
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P~ 410 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSPK 410 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecch
Confidence 0 1 24799999999999999999999999999999998877643 3345443
No 148
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.11 E-value=0.0037 Score=82.15 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred EEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCC
Q 000566 892 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 929 (1416)
Q Consensus 892 rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIq 929 (1416)
.||+||+|++... .+.+.++..|+....+..|||--.
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 6999999999653 346788899999999999999643
No 149
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.00 E-value=0.00035 Score=75.40 Aligned_cols=52 Identities=38% Similarity=0.800 Sum_probs=42.2
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhcc---------------CCCCCCCccccccccccchh
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA---------------DDNQCPTRNCKIRLSLSSVF 1149 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~---------------~~~~Cp~~~C~~~l~~~~vf 1149 (1416)
...|+||.+...+++++.|||+||..||.+|+.. ....|| .|+..+....++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--vCR~~Is~~~Lv 84 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--VCKSDVSEATLV 84 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCC--CCCCcCChhcEE
Confidence 3679999999999999999999999999998742 123566 699888766555
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.95 E-value=0.047 Score=71.09 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=45.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC-CCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT-MSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1326 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGs-ms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~G 1326 (1416)
.+..|||-+.....-+.|...|...||++..++.. ...++-.++|.+=-. .-.|-| +|.-+|.|
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTI-ATNMAGRG 502 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR--KGAVTI-ATNMAGRG 502 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC--CCcEEE-eccCCCCC
Confidence 68899999999999999999999999999999887 333344445554222 233444 34445555
No 151
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.89 E-value=0.00044 Score=55.86 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=31.1
Q ss_pred cccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCC
Q 000566 1099 CGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPT 1136 (1416)
Q Consensus 1099 C~iC~d~~~~~-vit~CgHifC~~Ci~e~l~~~~~~Cp~ 1136 (1416)
|+||.+...++ ++++|||+||.+|+..++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 68999999999999999888 677773
No 152
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.81 E-value=0.00056 Score=60.96 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.6
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccch
Q 000566 1098 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1148 (1416)
Q Consensus 1098 ~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~v 1148 (1416)
.|++|.+...+|++++|||+||.+||.+++.. ...||. |+..+....+
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~--~~~~~~~~~l 50 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPV--TGQPLTHEDL 50 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCC--CcCCCChhhc
Confidence 69999999999999999999999999999977 567885 5555544433
No 153
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00053 Score=77.24 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=42.5
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchh
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1149 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf 1149 (1416)
..|.+|.+...+|-.|+|||+||-.||.+|...... || .|+..+.++.++
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CP--lCR~~~~pskvi 289 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CP--LCREKFQPSKVI 289 (293)
T ss_pred CceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CC--cccccCCCccee
Confidence 569999999999999999999999999999877654 77 598877665543
No 154
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.71 E-value=0.00089 Score=55.13 Aligned_cols=34 Identities=35% Similarity=0.746 Sum_probs=28.8
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCCC
Q 000566 1099 CGICNDPPEDAVVSICGHVFCNQCICERLTADDN 1132 (1416)
Q Consensus 1099 C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~ 1132 (1416)
|+||.+...+|+...|||.||..||..++.....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~ 34 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG 34 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC
Confidence 8899999999999999999999999999876443
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00057 Score=86.02 Aligned_cols=48 Identities=35% Similarity=0.954 Sum_probs=42.7
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000566 1098 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1147 (1416)
Q Consensus 1098 ~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1147 (1416)
.|+.|+..+-+.+++.|||+||..|+...+....-+||. |...|+++.
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~--Cn~aFganD 692 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPK--CNAAFGAND 692 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCC--CCCCCCccc
Confidence 499999999999999999999999999999999999995 776666543
No 156
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00072 Score=71.13 Aligned_cols=47 Identities=43% Similarity=0.974 Sum_probs=35.9
Q ss_pred ccccccCCCCCCc--chhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000566 1096 LAICGICNDPPED--AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1145 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~--~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1145 (1416)
...|++|++.... ++-+.|||+||.+||...+.. ..+||. |+..+..
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~--C~kkIt~ 179 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPT--CRKKITH 179 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCC--cccccch
Confidence 4679999998765 456999999999999988754 357886 5545443
No 157
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.43 E-value=0.0063 Score=71.68 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=92.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1341 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~ 1341 (1416)
.--|||+.-+...+.++..|...||...-|+.++...+|..+.++|-+ +++.|+. .|-+.|.|++=.....||+.+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~-AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIA-ATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEE-EEeccccccCCcceeEEEecCch
Confidence 345899999999999999999999999999999999999999999998 6777777 45888999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEE
Q 000566 1342 WNPTTEDQAIDRAHRIGQTRPVSVL 1366 (1416)
Q Consensus 1342 WNPa~e~QAiGRvhRIGQtr~V~Vy 1366 (1416)
-|-+..-|--||++|-|-..=.+.|
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhhHHHHHhccccccCCCccceeee
Confidence 9999999999999999976655554
No 158
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.42 E-value=0.015 Score=78.15 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHH-hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCC--CcEEEEEEE
Q 000566 1299 ARDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT--RPVSVLRLT 1369 (1416)
Q Consensus 1299 qR~~aI~~F-n~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQt--r~V~VyrLi 1369 (1416)
.+.....+| ..+..+++||+. .-.=+|.+-+..+++++ |-+--.....||+.|+.|+=-. ..-.|+.|+
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 334444554 555677887776 55557888887777765 4445666778999999996433 335555554
No 159
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.39 E-value=0.0038 Score=73.64 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=89.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
++..|||..-...++++...|+..|+....++|++.+..|..-+.+|+. ....+|+ .|+.++.|++..--+.||+||.
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lv-vTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILV-VTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEE-EehhhhccCCCccccccccccC
Confidence 3578999999999999999999999999999999999999999999997 4444455 6799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCC
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr 1361 (1416)
+=.+.....|+||+.|-|.+-
T Consensus 339 p~~~klFvhRVgr~aragrtg 359 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTG 359 (529)
T ss_pred CCCCceEEEEecchhhccccc
Confidence 999999999999999999764
No 160
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.22 E-value=0.0025 Score=51.88 Aligned_cols=37 Identities=43% Similarity=1.048 Sum_probs=32.5
Q ss_pred cccCCCCCCcch-hcccCcccchhhhhhhhc-cCCCCCC
Q 000566 1099 CGICNDPPEDAV-VSICGHVFCNQCICERLT-ADDNQCP 1135 (1416)
Q Consensus 1099 C~iC~d~~~~~v-it~CgHifC~~Ci~e~l~-~~~~~Cp 1135 (1416)
|++|.+....++ +++|||.||..|+.+++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999988 899999999999999998 4555676
No 161
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.08 E-value=0.11 Score=57.64 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHHHhhccCCCCCC-cEEEecCCCchHHHHHHHHHHc
Q 000566 650 LLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILKE 695 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~~~~~~~G-GILADEMGLGKTl~aIALI~~~ 695 (1416)
|-+.|+.|+..++.. .+ .++.-..|.|||-+..+++...
T Consensus 2 ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 2 LNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp --HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHHh
Confidence 678999999887743 33 6778889999997777776553
No 162
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.035 Score=73.57 Aligned_cols=165 Identities=17% Similarity=0.131 Sum_probs=102.6
Q ss_pred ccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccc
Q 000566 645 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQV 724 (1416)
Q Consensus 645 ~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 724 (1416)
-...+|-++|++|++-+-+. .+.++|--.|-|||+.+-..|......
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~~-------------------------- 161 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALRD-------------------------- 161 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHHc--------------------------
Confidence 34567999999999988743 457999999999999986555432110
Q ss_pred ccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 000566 725 NGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP 803 (1416)
Q Consensus 725 ~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~ 803 (1416)
...+.-..|- +|..|=-+++...+..- .--|-+++|....
T Consensus 162 -----------------------------------~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--- 202 (1041)
T COG4581 162 -----------------------------------GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--- 202 (1041)
T ss_pred -----------------------------------CCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee---
Confidence 0125666775 46678888887766421 1224566665433
Q ss_pred ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000566 804 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 883 (1416)
Q Consensus 804 ~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~ 883 (1416)
-..+.++++|-++|++-+.+ +. .
T Consensus 203 --N~~A~clvMTTEILRnMlyr----------------g~---------------------------------------~ 225 (1041)
T COG4581 203 --NPDAPCLVMTTEILRNMLYR----------------GS---------------------------------------E 225 (1041)
T ss_pred --CCCCceEEeeHHHHHHHhcc----------------Cc---------------------------------------c
Confidence 24577888888999764421 00 1
Q ss_pred cccccCccEEEEcCccccCChhh-HHHHHH-Hhc-ccCcEEEeecccCCCChHHHHhhhhhc
Q 000566 884 PLAKVGWFRVVLDEAQSIKNHRT-QVARAC-WGL-RAKRRWCLSGTPIQNAIDDLYSYFRFL 942 (1416)
Q Consensus 884 pL~~i~W~rVIlDEAH~IKN~~S-~~skal-~~L-~ak~RwlLTGTPIqN~l~DLyslL~FL 942 (1416)
.+..+ .+||+||.|+|....- -.+..+ ..| +.-+-++||||- .+..++...+.-+
T Consensus 226 ~~~~i--~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~~~ 283 (1041)
T COG4581 226 SLRDI--EWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--PNAEEFAEWIQRV 283 (1041)
T ss_pred ccccc--ceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--CCHHHHHHHHHhc
Confidence 12333 3599999999987543 333332 333 444789999994 2345555555444
No 163
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0036 Score=75.58 Aligned_cols=52 Identities=31% Similarity=0.761 Sum_probs=41.3
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccC--CCCCCCccccccccccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLSS 1147 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~--~~~Cp~~~C~~~l~~~~ 1147 (1416)
...|+||.+++.-|+.+.|||+||..||..++... ..-|.++-|...+....
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 57899999999999999999999999999988653 33344556877665533
No 164
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.78 E-value=0.0061 Score=52.05 Aligned_cols=44 Identities=36% Similarity=0.961 Sum_probs=36.5
Q ss_pred cccccCCCCCCcchhcccCcc-cchhhhhhhhccCCCCCCCccccccc
Q 000566 1097 AICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHi-fC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
..|.+|.+.+.+.++.+|||. ||..|+..++. ....||. |+..+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~--Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPI--CRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTT--TTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCc--CChhh
Confidence 469999999999999999999 99999999987 6667884 77654
No 165
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.72 E-value=0.0037 Score=51.73 Aligned_cols=30 Identities=37% Similarity=0.912 Sum_probs=20.0
Q ss_pred cccCCCCCCc----chhcccCcccchhhhhhhhcc
Q 000566 1099 CGICNDPPED----AVVSICGHVFCNQCICERLTA 1129 (1416)
Q Consensus 1099 C~iC~d~~~~----~vit~CgHifC~~Ci~e~l~~ 1129 (1416)
|+||.+ ..+ |++.+|||+||.+|+..+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 778877 444 788889999999999998864
No 166
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.59 E-value=0.0055 Score=73.73 Aligned_cols=48 Identities=33% Similarity=0.710 Sum_probs=39.9
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1146 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1146 (1416)
...|.+|.+....|++++|||.||..||..++... ..|| .|+..+...
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCccccc
Confidence 35799999999999999999999999999998763 4687 587766543
No 167
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.50 E-value=0.011 Score=66.48 Aligned_cols=46 Identities=35% Similarity=0.770 Sum_probs=35.8
Q ss_pred ccccccCCCCCCc--------chhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000566 1096 LAICGICNDPPED--------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~--------~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1144 (1416)
...|+||.+...+ +++++|+|.||..||.+|+.. ...||. |+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCC--CCCEee
Confidence 4679999997443 357899999999999999864 567884 887653
No 168
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.47 E-value=0.0081 Score=47.07 Aligned_cols=37 Identities=46% Similarity=1.053 Sum_probs=31.7
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCCCCCC
Q 000566 1099 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1135 (1416)
Q Consensus 1099 C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp 1135 (1416)
|.+|.+....+++++|+|.||..|+..++......||
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP 37 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCP 37 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCC
Confidence 7789888888889999999999999999875555676
No 169
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.29 E-value=0.045 Score=67.95 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 728 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 728 (1416)
+|-.-|..||...+++.- .||--..|.|||++.-+++ ++...
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IV-yhl~~------------------------------ 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIV-YHLAR------------------------------ 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHH-HHHHH------------------------------
Confidence 477899999999998754 4777889999999885554 32110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000566 729 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRT 800 (1416)
Q Consensus 729 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SL-L~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 800 (1416)
+..+++||++|.++ +.|-++-|++- .|+|+..-..+|.
T Consensus 452 -----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 452 -----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRE 490 (935)
T ss_pred -----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhh
Confidence 12367999999985 79999999753 4888877766554
No 170
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.23 E-value=0.13 Score=69.15 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc--C
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA--C 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~A--n 1333 (1416)
.+.++|||.....+++.+...|.. .++.... .+.. ..|.+++++|+. ++..||| .+....+|+++..- .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~-~~~~iLl-gt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNN-GEKAILL-GTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHh-CCCeEEE-EcceeecccccCCCceE
Confidence 456899999999999999999875 3444332 3332 479999999997 5556676 56999999999854 4
Q ss_pred EEEEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000566 1334 HVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1334 ~VI~~Dp~W-NPa-----------------------------~e~QAiGRvhRIGQtr~V~V 1365 (1416)
.||+.-+|+ +|. ...|++||+.|-.+.+-|.+
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 566666665 332 24499999999888776533
No 171
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0094 Score=66.68 Aligned_cols=48 Identities=29% Similarity=0.719 Sum_probs=38.6
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCC-CCCCcccccccccc
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDN-QCPTRNCKIRLSLS 1146 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~-~Cp~~~C~~~l~~~ 1146 (1416)
..|.+|.+.++.|..++|||+||.-||...++.... .||. |+....+.
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cpl--CRak~~pk 264 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPL--CRAKVYPK 264 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCch--hhhhccch
Confidence 459999999999999999999999999996555444 4884 77655443
No 172
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.73 E-value=0.2 Score=64.49 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCc------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQY-RRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNM------ 1329 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~-~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkaGg~GLNL------ 1329 (1416)
.|.-.+.|+.+.. +..+...|... +++ +.+.|..+ .|..++++|+.. +.-.||+ .+.+..+|+++
T Consensus 470 ~G~~lvLfTS~~~-~~~~~~~l~~~-l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSH-ISAIGQLVELG-IPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHH-HHHHHHHHHhh-cCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCC
Confidence 4555666666654 45566666543 322 45556442 468899999984 3345555 66999999999
Q ss_pred ----cccCEEEEEcCCCCcC
Q 000566 1330 ----VAACHVLLLDLWWNPT 1345 (1416)
Q Consensus 1330 ----q~An~VI~~Dp~WNPa 1345 (1416)
...+.||+.-+|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 3578899988887764
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=94.64 E-value=0.16 Score=59.66 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHH
Q 000566 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~ 693 (1416)
.||.|++-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666665544422 2367777899999999876654
No 174
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=94.64 E-value=0.16 Score=59.66 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHH
Q 000566 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~ 693 (1416)
.||.|++-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666665544422 2367777899999999876654
No 175
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.47 E-value=0.019 Score=53.17 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=36.4
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1145 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1145 (1416)
..|+||.+.+.+||+++|||.|+..||..++......||. |+..+..
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~ 51 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSE 51 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCc
Confidence 4699999999999999999999999999999987788885 3444433
No 176
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.37 E-value=0.025 Score=45.97 Aligned_cols=39 Identities=41% Similarity=0.921 Sum_probs=30.8
Q ss_pred ccccCCCCCCcch-hcccCcccchhhhhhhhccCCCCCCC
Q 000566 1098 ICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPT 1136 (1416)
Q Consensus 1098 ~C~iC~d~~~~~v-it~CgHifC~~Ci~e~l~~~~~~Cp~ 1136 (1416)
.|.+|.+....++ +.+|+|.||..|+..++......||.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~ 40 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence 3889988875554 45599999999999998876667874
No 177
>PHA02926 zinc finger-like protein; Provisional
Probab=94.35 E-value=0.022 Score=62.38 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=35.4
Q ss_pred ccccccCCCCCC---------cchhcccCcccchhhhhhhhccC-----CCCCCCcccccccc
Q 000566 1096 LAICGICNDPPE---------DAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1096 ~~~C~iC~d~~~---------~~vit~CgHifC~~Ci~e~l~~~-----~~~Cp~~~C~~~l~ 1144 (1416)
...|+||.+..- ..++.+|+|.||..||..|.... ...|| .|+..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCP--iCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCP--ICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCC--CCcceee
Confidence 467999998631 25788999999999999998653 23488 4877653
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.04 E-value=1.7 Score=56.95 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1333 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An------ 1333 (1416)
.+..|||-+.....-+++...|++.||+...++..-. +|++-+-.+.- ....|-| +|.-+|.|-++.-..
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG-~~gaVTi-ATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG-QPGAVTI-ATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC-CCCcccc-ccccccCCcccccCCCHHHHH
Confidence 6899999999999999999999999999988888754 56665555553 2234555 667778888776332
Q ss_pred -----EEEEEcCCCCcChHHHHHHhhhccCC
Q 000566 1334 -----HVLLLDLWWNPTTEDQAIDRAHRIGQ 1359 (1416)
Q Consensus 1334 -----~VI~~Dp~WNPa~e~QAiGRvhRIGQ 1359 (1416)
+||=-+-.=+-....|--||++|.|-
T Consensus 504 ~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 504 ELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred HhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 45656666555566688889999993
No 179
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.92 E-value=0.031 Score=46.30 Aligned_cols=38 Identities=45% Similarity=0.846 Sum_probs=29.9
Q ss_pred ccccCCCCC---CcchhcccCcccchhhhhhhhccCCCCCCC
Q 000566 1098 ICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1136 (1416)
Q Consensus 1098 ~C~iC~d~~---~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~ 1136 (1416)
.|.||.+.. +..+..+|+|+||..|+.+|+... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 589998875 345678899999999999999774 57873
No 180
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.81 E-value=0.041 Score=63.91 Aligned_cols=49 Identities=27% Similarity=0.738 Sum_probs=37.8
Q ss_pred cccccCCCC----CCc-chhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000566 1097 AICGICNDP----PED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1147 (1416)
Q Consensus 1097 ~~C~iC~d~----~~~-~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1147 (1416)
..|++|... +.. .++..|||.||..|+...+......|| .|+..+....
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 469999773 221 244589999999999999887777888 7988877665
No 181
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.70 E-value=0.038 Score=45.91 Aligned_cols=37 Identities=30% Similarity=0.891 Sum_probs=29.3
Q ss_pred cccCCCCC---CcchhcccCcccchhhhhhhhccCCCCCCC
Q 000566 1099 CGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1136 (1416)
Q Consensus 1099 C~iC~d~~---~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~ 1136 (1416)
|.+|.... ..++++.|||+||..|+.... .....||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 77887765 347899999999999999988 55566774
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.30 E-value=0.26 Score=52.95 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc----CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecc--ccccccCcc--c
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK--AASLGLNMV--A 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~----gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~Stk--aGg~GLNLq--~ 1331 (1416)
.+.++|||...-..++.+...|+.. ++.+..- + ..++.++++.|..+. -.||+ ++. ...+|+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~-~~il~-~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGE-GAILL-AVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSS-SEEEE-EETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhcc-CeEEE-EEecccEEEeecCCCch
Confidence 5689999999999999999999875 3443333 2 357899999999943 33444 556 789999998 4
Q ss_pred cCEEEEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000566 1332 ACHVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1332 An~VI~~Dp~W-NPa-----------------------------~e~QAiGRvhRIGQtr~V~V 1365 (1416)
+..||+.-+|+ +|. ...||+||+.|-.+.+-+.|
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 66788888776 442 12388999999766554433
No 183
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.18 E-value=0.039 Score=48.61 Aligned_cols=45 Identities=33% Similarity=0.667 Sum_probs=31.9
Q ss_pred ccccccCCCCCCcchhc-ccCcccchhhhhhhh-ccCCCCCCCcccc
Q 000566 1096 LAICGICNDPPEDAVVS-ICGHVFCNQCICERL-TADDNQCPTRNCK 1140 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit-~CgHifC~~Ci~e~l-~~~~~~Cp~~~C~ 1140 (1416)
...|++...+..+||.+ .|+|+|..+.|.+++ .....+||..+|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 36799999999999985 899999999999999 3455689998884
No 184
>PRK10536 hypothetical protein; Provisional
Probab=93.08 E-value=0.42 Score=54.83 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=31.9
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCCh
Q 000566 891 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 932 (1416)
Q Consensus 891 ~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l 932 (1416)
..|||||||++.- ......+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999964 355556678888999999999977653
No 185
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.77 E-value=0.032 Score=63.85 Aligned_cols=46 Identities=35% Similarity=0.797 Sum_probs=37.5
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1145 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1145 (1416)
-.|.||.+-..-|++++|+|.||.-||..+|... ..||. |...+..
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~--C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPT--CCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCc--eecccch
Confidence 3599999998899999999999999999998654 46775 6655444
No 186
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=92.64 E-value=0.25 Score=63.48 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=30.0
Q ss_pred EEEEcCccccCChhhHHHHHHHhcccCcEEEeeccc
Q 000566 892 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 927 (1416)
Q Consensus 892 rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTP 927 (1416)
.||+||-|++... .+.+.++..|+....+=..||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 5999999999876 7889999999888877777874
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.48 E-value=0.22 Score=55.32 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=22.0
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChH
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 933 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~ 933 (1416)
.+..||+||||++... ..-..+.++....++.++|=|.|....
T Consensus 119 ~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 3468999999998543 333456677778999999999886543
No 188
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=92.29 E-value=0.06 Score=60.48 Aligned_cols=38 Identities=34% Similarity=0.785 Sum_probs=32.9
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCC
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1135 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp 1135 (1416)
..|.||.+-..-|++++|||.||.-||..+|....+ ||
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~-CP 63 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF-CP 63 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCCC-Cc
Confidence 459999999999999999999999999999976443 55
No 189
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.22 E-value=0.71 Score=62.19 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI 692 (1416)
...+|+|.+.+..+.+..... +-+++--.+|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 357899998777666544321 234555699999998775443
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.35 E-value=0.81 Score=59.31 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-------CCcEEecCCCCCHHHHHHHHHHHhc---CCC---ccEEEeeccccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNT---LPE---VSVMIMSLKAASLG 1326 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~---d~~---v~VLL~StkaGg~G 1326 (1416)
-..-+|||-..-.+++-+....+.. +++-+.+ .--+..+=.+++.+|.+ +++ ...+-+.-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 3455899988888888875554432 2222222 11133444566667754 122 21233345667899
Q ss_pred cCcc--ccCEEEEEcCCCCcC
Q 000566 1327 LNMV--AACHVLLLDLWWNPT 1345 (1416)
Q Consensus 1327 LNLq--~An~VI~~Dp~WNPa 1345 (1416)
|++. .+.-||+..+++=|.
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPV 659 (945)
T ss_pred CCccccCCceeEEecCCCCCC
Confidence 9996 567778888886554
No 191
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=91.09 E-value=0.17 Score=45.27 Aligned_cols=41 Identities=34% Similarity=0.910 Sum_probs=22.2
Q ss_pred cccccCCCCCCcch-hcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000566 1097 AICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKIR 1142 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~v-it~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~ 1142 (1416)
-.|.+|.+....|| +..|.|+||..||...+... || .|..+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~---CP--vC~~P 49 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE---CP--VCHTP 49 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB----S--SS--B
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCC---CC--CcCCh
Confidence 46999999999997 68999999999998876543 66 36544
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=90.81 E-value=2.7 Score=54.70 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=31.2
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
..|-+.|+.|+.+.+... .-.|+--..|.|||.++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999987431 12467778999999988888754
No 193
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.71 E-value=1.2 Score=60.41 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHV 1335 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~--An~V 1335 (1416)
.+.++|||.....++..+...|..... .+..+.-+++...|.+++++|+. .+-.||+ .+.+..+|+++.. ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLl-G~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILL-GTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEE-ecCcccCccccCCCceEEE
Confidence 345778877778888888888875422 12222223333458999999997 3344666 4588899999984 4788
Q ss_pred EEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000566 1336 LLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1336 I~~Dp~W-NPa-----------------------------~e~QAiGRvhRIGQtr~V~V 1365 (1416)
|+.-+|+ +|. ...|++||+.|-.+.+-|.|
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 8888777 554 12488999999888776533
No 194
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.69 E-value=1.7 Score=56.93 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=76.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVL 1336 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--~An~VI 1336 (1416)
.+.++|||...-.++..+...|...... .+...|.. .+.++++.|...++. -+++.+....+|+|+. ....||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3458999999999999999999887663 45555554 456999999986554 4555679999999998 447888
Q ss_pred EEcCCCC-cC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000566 1337 LLDLWWN-PT-----------------------------TEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1337 ~~Dp~WN-Pa-----------------------------~e~QAiGRvhRIGQtr~V~V 1365 (1416)
+.-.||= |. ...||+||+.|--+-+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8888774 43 34599999999555555555
No 195
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.65 E-value=0.61 Score=60.64 Aligned_cols=57 Identities=26% Similarity=0.241 Sum_probs=40.5
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------ccccCCCEEEEechhhh
Q 000566 761 AGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIVS 820 (1416)
Q Consensus 761 ~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~------~~L~~~DVVITTY~~l~ 820 (1416)
+.+||++|. ++..|+.+-+++.|. .-.|.+||..-..... ...++..|||=|.+.+-
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 358999998 488999999999885 2458889986543321 11245778998877663
No 196
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.68 E-value=0.2 Score=58.71 Aligned_cols=52 Identities=25% Similarity=0.831 Sum_probs=42.7
Q ss_pred HhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccC-CCCCCCcccccccc
Q 000566 1091 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-DNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1091 ~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~-~~~Cp~~~C~~~l~ 1144 (1416)
.+-+....|.||.+...+.-+.+|||++|..|+..|-..+ ...||- |+..+.
T Consensus 364 eMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPF--CRcEIK 416 (563)
T KOG1785|consen 364 EMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPF--CRCEIK 416 (563)
T ss_pred HccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCc--eeeEec
Confidence 3556678899999999999999999999999999998776 667995 555543
No 197
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.15 E-value=2.3 Score=56.95 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=69.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--~An~VI~ 1337 (1416)
.+.+++|+.....+++.+...|....+.. ...|... .|.+++++|+. .+-.||+ .+....+|+++. .+..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~vLl-G~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQILL-GLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeEEE-ecchhhCCCCCCCCCeEEEEE
Confidence 45678888778888888888887655443 5555322 36779999997 4445776 458899999996 4556677
Q ss_pred EcCC-CCcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000566 1338 LDLW-WNPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1365 (1416)
Q Consensus 1338 ~Dp~-WNPa-----------------------------~e~QAiGRvhRIGQtr~V~V 1365 (1416)
.-+| .+|. ...|++||+.|--..+-|.|
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 6655 3452 23389999999766666533
No 198
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=0.21 Score=57.07 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=46.5
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhh
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSK 1151 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf~~ 1151 (1416)
..+|.||......|+...|+|.||..||......+...|+ .|+..+..+-++.+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcch
Confidence 4689999999999999999999999999999988888888 59988876655544
No 199
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.14 Score=43.96 Aligned_cols=46 Identities=33% Similarity=0.759 Sum_probs=39.9
Q ss_pred ccccccCCCCCCcchhcccCcc-cchhhhhhhhccCCCCCCCccccccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHi-fC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
.++|.||.+.+.+.|+-.|||. +|.+|-.+.++.....||. |+..+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPi--CRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPI--CRAPI 53 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcc--hhhHH
Confidence 4789999999999999999996 7999999999888888994 76554
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=88.56 E-value=2.1 Score=44.95 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEEEcCCC-
Q 000566 1273 MLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLLLDLWW- 1342 (1416)
Q Consensus 1273 ~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq--~An~VI~~Dp~W- 1342 (1416)
.++.+...++..++ ..+.+-| ....+..++++.|....+-.||+ ++...++|+|+. .+..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~-~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILL-ATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEE-EccceecceecCCCCeeEEEEEecCCC
Confidence 34555555555543 3344444 44456899999999744334554 556699999998 356777777664
Q ss_pred CcC
Q 000566 1343 NPT 1345 (1416)
Q Consensus 1343 NPa 1345 (1416)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 201
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.25 E-value=4.1 Score=45.05 Aligned_cols=38 Identities=29% Similarity=0.270 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHH
Q 000566 650 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI 692 (1416)
|-+-|+.++..++.... +-.+|--..|.|||..+-+++
T Consensus 2 L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 67899999999985432 235777789999998654443
No 202
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=0.068 Score=62.10 Aligned_cols=46 Identities=37% Similarity=0.857 Sum_probs=38.1
Q ss_pred cccccCCCCCCcchh-cccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000566 1097 AICGICNDPPEDAVV-SICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vi-t~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1144 (1416)
.+|++|.+-....+. ..|+|-||.+||...+....+.||. |+..+.
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecpt--cRk~l~ 90 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPT--CRKKLV 90 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCch--HHhhcc
Confidence 579999887766654 4699999999999999999999996 776653
No 203
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=87.44 E-value=1.8 Score=50.18 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=61.5
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 726 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 726 (1416)
...+++-|..|+--|. .|-|.=-.+|=|||+++ ++.+.....
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~-~l~a~~~AL---------------------------- 116 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIA-ALPAALNAL---------------------------- 116 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHH-HHHHHHHHT----------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHH-HHHHHHHHH----------------------------
Confidence 3456677888886663 56788889999999988 343332110
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 000566 727 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKD 802 (1416)
Q Consensus 727 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd 802 (1416)
..+++=||+...-| .+|...+-+++. +++-..........
T Consensus 117 --------------------------------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 117 --------------------------------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEE 160 (266)
T ss_dssp --------------------------------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHH
T ss_pred --------------------------------hcCCcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHH
Confidence 01346788887655 478888877764 77777666543322
Q ss_pred cccccCCCEEEEechhhhcc
Q 000566 803 PCELAKFDVVITTYSIVSME 822 (1416)
Q Consensus 803 ~~~L~~~DVVITTY~~l~~e 822 (1416)
....-..||+-.|-..|.-+
T Consensus 161 r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHHH
T ss_pred HHHHHhCcccccccchhhHH
Confidence 23344678888887777543
No 204
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.89 E-value=2.2 Score=56.39 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeec--ccccccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSL--KAASLGL 1327 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~St--kaGg~GL 1327 (1416)
.+..+|||...-..++.+...+...|+ +.+.+-+.- ..++++++++|... +...||+ +. ...+||+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~-av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLL-SVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEE-EecCCcccCcc
Confidence 457888888888888888887775432 223333332 25789999999752 2334555 54 5678999
Q ss_pred Ccc--ccCEEEEEcCCC-CcC------------------------------hHHHHHHhhhccCCCCcEE
Q 000566 1328 NMV--AACHVLLLDLWW-NPT------------------------------TEDQAIDRAHRIGQTRPVS 1364 (1416)
Q Consensus 1328 NLq--~An~VI~~Dp~W-NPa------------------------------~e~QAiGRvhRIGQtr~V~ 1364 (1416)
|+. .+..||++-+|+ ||. ...||+||+.|=-+-+-+.
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~i 668 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSI 668 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEE
Confidence 998 478888888887 553 2348999999966665543
No 205
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.20 E-value=1.5 Score=53.96 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=78.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCC----cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKD----SSI----QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~----~gI----~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~ 1331 (1416)
.+-+.|.||..+.+.+++-...+. -+- .+..|.|+-..++|.++-.+.-. +...-+ ++|.|..+|+++-.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~gi-IaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGI-IATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEE-Eecchhhhcccccc
Confidence 567999999999987776554432 111 24568899999999998776655 444444 48899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCC
Q 000566 1332 ACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1332 An~VI~~Dp~WNPa~e~QAiGRvhRIGQt 1360 (1416)
-+-|+++.-|+.-+...|-.||++|-...
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCC
Confidence 99999999999999999999999996543
No 206
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.07 E-value=0.23 Score=54.62 Aligned_cols=51 Identities=24% Similarity=0.627 Sum_probs=40.3
Q ss_pred cccccCCCC----C-Ccchhcc-cCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000566 1097 AICGICNDP----P-EDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1147 (1416)
Q Consensus 1097 ~~C~iC~d~----~-~~~vit~-CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1147 (1416)
..|++|... | -..++.| |.|-+|..|+....+...-+||.++|...|....
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 469999543 1 2234556 9999999999999999999999999988776543
No 207
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=85.80 E-value=0.31 Score=52.20 Aligned_cols=35 Identities=37% Similarity=0.881 Sum_probs=30.6
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccC
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD 1130 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~ 1130 (1416)
...|.||-..-+.||++.|||.||..|....+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg 230 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG 230 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC
Confidence 46799999999999999999999999988766543
No 208
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=85.35 E-value=1.4 Score=54.51 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=41.9
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc--cCCCEEEEechhhh
Q 000566 763 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIVS 820 (1416)
Q Consensus 763 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L--~~~DVVITTY~~l~ 820 (1416)
.|||+|+. |..|-..-|..... ...+++..+.|.-....+..+ ..-||||.|...|-
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 69999997 77788888765554 457899988887654433333 25789999998884
No 209
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=0.4 Score=54.69 Aligned_cols=45 Identities=29% Similarity=0.602 Sum_probs=37.8
Q ss_pred cccccCCCCCC---cchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000566 1097 AICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1097 ~~C~iC~d~~~---~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
..|.||..... .-++++|.|.|=..|++.|+....++||. |++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv--Crt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV--CRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc--cCCCC
Confidence 67999987643 35789999999999999999999999995 87654
No 210
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=84.49 E-value=6.4 Score=51.01 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=33.7
Q ss_pred cCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCC
Q 000566 888 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 931 (1416)
Q Consensus 888 i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~ 931 (1416)
..+++||||||.++- ....++.+..+....|++|-|=|-|-.
T Consensus 264 l~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 264 LHLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhhcC
Confidence 357899999999995 345667778888899999999886643
No 211
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=84.43 E-value=3.9 Score=53.95 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCcc--ccCEE
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNMV--AACHV 1335 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkaGg~GLNLq--~An~V 1335 (1416)
.+++||.....+++.+...|... +.+ +...|. ..|.++++.|.+. ++..||+ .+....+|+++. ....|
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-EeccccccccCCCCceEEE
Confidence 34777777778888888888643 333 344564 3578899888752 3445666 458889999997 46888
Q ss_pred EEEcCCC
Q 000566 1336 LLLDLWW 1342 (1416)
Q Consensus 1336 I~~Dp~W 1342 (1416)
|+.-+|+
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 8888776
No 212
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=0.41 Score=55.12 Aligned_cols=42 Identities=31% Similarity=0.785 Sum_probs=35.6
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1140 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~ 1140 (1416)
...|+||.+....|.+.+|+|.||..|+...+. ....|| .|+
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp--~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCP--VCR 54 (386)
T ss_pred cccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCc--ccC
Confidence 467999999988888999999999999999888 445666 466
No 213
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.62 E-value=0.5 Score=53.51 Aligned_cols=42 Identities=36% Similarity=0.930 Sum_probs=36.4
Q ss_pred cccccCCCCCCcchhc-ccCcccchhhhhhhhccCCCCCCCcccc
Q 000566 1097 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCK 1140 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit-~CgHifC~~Ci~e~l~~~~~~Cp~~~C~ 1140 (1416)
-.|+.|......++-+ .|+|.||.+||...|-..+..|| +|.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cp--nC~ 317 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCP--NCS 317 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCC--Ccc
Confidence 3599998888888877 79999999999999988899999 464
No 214
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=83.35 E-value=3.8 Score=43.05 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCC----cEEecCCCCCHHHHHHHHHHHhcCCC--ccEEEeeccc--cccccCccc--cCEEEEEcCCC
Q 000566 1273 MLDLLEASLKDSSI----QYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKA--ASLGLNMVA--ACHVLLLDLWW 1342 (1416)
Q Consensus 1273 ~LdlLe~~L~~~gI----~~~rldGsms~~qR~~aI~~Fn~d~~--v~VLL~Stka--Gg~GLNLq~--An~VI~~Dp~W 1342 (1416)
.++.+...++..++ ..+.+.+.. ..+..++++.|+...+ ..||+ ++.. .+||+||.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 45556666665543 234444443 2355799999997432 23555 4444 799999983 56778877664
Q ss_pred -CcC
Q 000566 1343 -NPT 1345 (1416)
Q Consensus 1343 -NPa 1345 (1416)
+|.
T Consensus 81 p~~~ 84 (142)
T smart00491 81 PNPD 84 (142)
T ss_pred CCCC
Confidence 443
No 215
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.16 E-value=7 Score=46.35 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=39.8
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcccc-cCCCEEEEechhhhc
Q 000566 763 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-KDPCEL-AKFDVVITTYSIVSM 821 (1416)
Q Consensus 763 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~-kd~~~L-~~~DVVITTY~~l~~ 821 (1416)
.||+.|+. +-.|-.+++. .+...-.+++.++.|.... .....| .+-++||+|-+.+.-
T Consensus 78 alvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad 138 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD 138 (442)
T ss_pred EEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc
Confidence 59999997 6678888875 4454557888887776432 222333 467899999887753
No 216
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=82.82 E-value=7.5 Score=50.21 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=32.6
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCC
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 931 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~ 931 (1416)
.+++||||||-++-.. ...+.+..++...|++|.|=|-|=.
T Consensus 259 ~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 259 PLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhhCC
Confidence 5789999999999543 5566677788889999999886643
No 217
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=82.70 E-value=4.5 Score=48.87 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.1
Q ss_pred EEecCCCchHHHHHHHHHH
Q 000566 676 LADDQGLGKTISTIALILK 694 (1416)
Q Consensus 676 LADEMGLGKTl~aIALI~~ 694 (1416)
+--..|.|||+.++.++..
T Consensus 6 I~G~aGTGKTvla~~l~~~ 24 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKE 24 (352)
T ss_pred EEecCCcCHHHHHHHHHHH
Confidence 3445799999999988855
No 218
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=82.20 E-value=4.4 Score=51.02 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=31.6
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 646 l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+...|-+-|+.|+.+....-. + -++=-..|.|||.+..-+|..
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred CCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHH
Confidence 445578899999999886531 1 355667899999988777743
No 219
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=81.47 E-value=9.6 Score=50.52 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=31.2
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCC
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 931 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~ 931 (1416)
..++||||||+++-.. ...+.+..+....|++|-|=|-|--
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECcccccc
Confidence 3578999999999543 4456666777888999999886643
No 220
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=81.04 E-value=6 Score=50.44 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=84.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc------CC--cEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCcc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS------SI--QYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMV 1330 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~------gI--~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkaGg~GLNLq 1330 (1416)
+..-+|||=.-..-++.+...|.+. ++ -++-++|+++.++..++ |...| +.|=+|+||..+...|...
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 5558999987777777776666543 22 25678999998887665 76654 6666777999999888887
Q ss_pred ccCEEEE----EcCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1331 AACHVLL----LDLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1331 ~An~VI~----~Dp~WNPa-----------~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
.-.+||= ---.|||. .-.||.-|++|-|.+.+..+|||+++.-.+
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 7666641 12235663 667999999999999999999999987663
No 221
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=0.87 Score=51.65 Aligned_cols=43 Identities=30% Similarity=0.771 Sum_probs=34.4
Q ss_pred hhccccccCCCCCCcch-hcccCcccchhhhhhhhcc-CCCCCCC
Q 000566 1094 ASLAICGICNDPPEDAV-VSICGHVFCNQCICERLTA-DDNQCPT 1136 (1416)
Q Consensus 1094 ~~~~~C~iC~d~~~~~v-it~CgHifC~~Ci~e~l~~-~~~~Cp~ 1136 (1416)
++...|++|.++|..|. +.+|+|++|.-|+.....- ....||.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~ 281 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL 281 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc
Confidence 34578999999999985 4569999999999987654 4567884
No 222
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=80.53 E-value=8 Score=51.98 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 690 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIA 690 (1416)
...|+-|.+-...+.+..... .-.++--..|.|||+.-+.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayll 283 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLL 283 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHH
Confidence 357889998666666543321 1134455899999987643
No 223
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=80.23 E-value=12 Score=51.29 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 689 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aI 689 (1416)
...||-|.+-+..+.+..... .-.++=-.+|+|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 357899999776666544322 113334489999998764
No 224
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=79.61 E-value=15 Score=45.54 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc-cccCccccCEEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLLL 1338 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg-~GLNLq~An~VI~~ 1338 (1416)
...++|||...---.--|..+|++.++.|+.+.--++..+-.++-..|.. +...+||.|-++-= .=..+..+.+||||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 55788999766555566889999999999999999999999999999998 78999999966631 23456789999999
Q ss_pred cCCCCcChHHHHHHhhhccCC----CCcEEEEEEEeCC-CHH-HHHHHHHHHH
Q 000566 1339 DLWWNPTTEDQAIDRAHRIGQ----TRPVSVLRLTVKN-TVE-DRILALQQKK 1385 (1416)
Q Consensus 1339 Dp~WNPa~e~QAiGRvhRIGQ----tr~V~VyrLi~kd-TIE-ErIl~lq~~K 1385 (1416)
.||-+|.-....+.-+..-.+ ..+.+|.-|.++= .+. |||.-.+..+
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 999999988877765554433 3456676677653 221 4555444433
No 225
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=77.36 E-value=14 Score=48.61 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=23.8
Q ss_pred ccEEEEcCccccCCh-hh-------HHHHHHHhc--ccCcEEEeeccc
Q 000566 890 WFRVVLDEAQSIKNH-RT-------QVARACWGL--RAKRRWCLSGTP 927 (1416)
Q Consensus 890 W~rVIlDEAH~IKN~-~S-------~~skal~~L--~ak~RwlLTGTP 927 (1416)
||.|||||+-.+-+. .| .....+..+ ++++.+++-||-
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 899999998654332 11 111222223 688999999974
No 226
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.85 E-value=2.4 Score=53.07 Aligned_cols=111 Identities=22% Similarity=0.258 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccc
Q 000566 651 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV 730 (1416)
Q Consensus 651 ~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 730 (1416)
.|-|++++-.|+++. -++-+--.|-|||+.-+.=|+..... .
T Consensus 160 t~iq~~aipvfl~~r-------~~lAcapTGsgKtlaf~~Pil~~L~~-------------------------------~ 201 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKR-------DVLACAPTGSGKTLAFNLPILQHLKD-------------------------------L 201 (593)
T ss_pred Ccccchhhhhhhccc-------ceEEeccCCCcchhhhhhHHHHHHHH-------------------------------h
Confidence 468999999999653 37788999999987654433321110 0
Q ss_pred ccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC-Cc--cc
Q 000566 731 KQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT-SKGSLSVLVYHGSSRTK-DP--CE 805 (1416)
Q Consensus 731 k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~-~~~~L~Vlvy~G~~r~k-d~--~~ 805 (1416)
++ .++.-.-..+||.|.- |..|-..|..+... ..-.+++.-+....... .+ ..
T Consensus 202 ~~----------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~ 259 (593)
T KOG0344|consen 202 SQ----------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS 259 (593)
T ss_pred hc----------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH
Confidence 00 0000011369999985 77899999987651 12234443333332111 11 22
Q ss_pred ccCCCEEEEechhhhc
Q 000566 806 LAKFDVVITTYSIVSM 821 (1416)
Q Consensus 806 L~~~DVVITTY~~l~~ 821 (1416)
-..||++|.|...+..
T Consensus 260 ~~k~dili~TP~ri~~ 275 (593)
T KOG0344|consen 260 DEKYDILISTPMRIVG 275 (593)
T ss_pred HHHHHHHhcCHHHHHH
Confidence 2468888888776653
No 227
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.67 E-value=1.5 Score=49.25 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred EeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000566 1317 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1317 L~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
++++...|.|++..+.|.||+||.+-.+.....+++|++|.|-+--
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl 347 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 347 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc
Confidence 4578999999999999999999999999999999999999998764
No 228
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.53 E-value=1.3 Score=51.40 Aligned_cols=34 Identities=35% Similarity=0.740 Sum_probs=31.5
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccC
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTAD 1130 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~ 1130 (1416)
..|+||.-.+..+|+++|+|--|..||..++.+.
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~ 456 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC 456 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcC
Confidence 5699999999999999999999999999998754
No 229
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=75.28 E-value=1.8 Score=40.13 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=28.3
Q ss_pred cccccCCCCCCc------------c-hhcccCcccchhhhhhhhccCCCCCCC
Q 000566 1097 AICGICNDPPED------------A-VVSICGHVFCNQCICERLTADDNQCPT 1136 (1416)
Q Consensus 1097 ~~C~iC~d~~~~------------~-vit~CgHifC~~Ci~e~l~~~~~~Cp~ 1136 (1416)
..|.||.++..+ + +...|+|.|-..||..++.... .||.
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 459999876521 1 3468999999999999996655 7874
No 230
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=74.92 E-value=42 Score=44.41 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEeecccCCCChHHHHhhhhhccCCCc
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 947 (1416)
+|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...++..++
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 57789999999995432 23344444 34668888888665555555555544444444
No 231
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=74.82 E-value=11 Score=48.61 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=36.5
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 641 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 641 ~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+-+|.......|||++-+.-|.... ++--.+.--.-+|||..++.+|.+
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 3345567789999999888886543 345677777899999988777754
No 232
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=1.2 Score=56.92 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=40.1
Q ss_pred hccccccCCCCCCc-----chhcccCcccchhhhhhhhccCCCCCCCccccccccccch
Q 000566 1095 SLAICGICNDPPED-----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1148 (1416)
Q Consensus 1095 ~~~~C~iC~d~~~~-----~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~v 1148 (1416)
....|.||.+.... +-..+|+|+||..|+.+|+.. ...||. |+..+.....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhhhhcccc
Confidence 45779999998776 678899999999999999987 667885 6664443333
No 233
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=1.5 Score=53.32 Aligned_cols=47 Identities=34% Similarity=0.799 Sum_probs=38.4
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000566 1095 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1095 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1144 (1416)
+...|.+|......|+.++|||.||..||...+. ....||. |+..+.
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~--Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPL--CRDELV 129 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcc--cccccc
Confidence 3467999999999999999999999999988655 5566775 776654
No 234
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.81 E-value=1.7 Score=49.90 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=35.1
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000566 1095 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1142 (1416)
Q Consensus 1095 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~ 1142 (1416)
....|.||-..-..||++.|+|.||..|-...+.... .|+ .|..+
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~--vC~~~ 284 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCY--VCSQQ 284 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCC-cce--ecccc
Confidence 3456999999999999999999999999988775432 344 45544
No 235
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=73.69 E-value=1.1 Score=52.31 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=37.3
Q ss_pred cccccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000566 1097 AICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~-vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1144 (1416)
..|.+|..-..++ .++-|.|.||..||-+++.. .+.||. |...+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih 61 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIH 61 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceecc
Confidence 5799999887776 57899999999999999988 778996 655543
No 236
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=1.9 Score=51.26 Aligned_cols=48 Identities=31% Similarity=0.620 Sum_probs=38.8
Q ss_pred cccccCCCCCC---cchhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000566 1097 AICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1146 (1416)
Q Consensus 1097 ~~C~iC~d~~~---~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1146 (1416)
..|.||.|.-+ .-.+.+|.|.|=..||+.|++....-||. |+......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 48999988633 34679999999999999999999888995 87755443
No 237
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=73.42 E-value=2 Score=46.34 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.9
Q ss_pred cccCCCEEEEechhhhc
Q 000566 805 ELAKFDVVITTYSIVSM 821 (1416)
Q Consensus 805 ~L~~~DVVITTY~~l~~ 821 (1416)
....+||||++|..|-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34578999999999864
No 238
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=2.3 Score=50.81 Aligned_cols=57 Identities=28% Similarity=0.516 Sum_probs=42.2
Q ss_pred HHHHHhhhhccccccCCCCC---CcchhcccCcccchhhhhhhhcc-------CCCCCCCccccccc
Q 000566 1087 YLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLTA-------DDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1087 ~ll~~le~~~~~C~iC~d~~---~~~vit~CgHifC~~Ci~e~l~~-------~~~~Cp~~~C~~~l 1143 (1416)
.-+..+..++..|.||.+.. ...+.++|.|+||..|...+.+. ..-+||.+.|+...
T Consensus 175 a~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a 241 (445)
T KOG1814|consen 175 ATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVA 241 (445)
T ss_pred HHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccC
Confidence 33445666788999998753 34578999999999999998654 23379988887543
No 239
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=2 Score=49.22 Aligned_cols=49 Identities=24% Similarity=0.693 Sum_probs=37.9
Q ss_pred ccccCCCC-----CCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccch
Q 000566 1098 ICGICNDP-----PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1148 (1416)
Q Consensus 1098 ~C~iC~d~-----~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~v 1148 (1416)
.|+.|-.. .-...+.+|+|-+|..|+..........|| .|...|..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhccc
Confidence 47777442 222345799999999999999999999999 89888776543
No 240
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=72.04 E-value=15 Score=48.06 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 000566 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 732 (1416)
Q Consensus 653 hQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~ 732 (1416)
.|-.++.-+.+.-.... +.-+|---.|.|||+++..++...
T Consensus 13 ~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~------------------------------------- 53 (655)
T TIGR00631 13 DQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV------------------------------------- 53 (655)
T ss_pred HHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh-------------------------------------
Confidence 78888888876543221 224677789999999997777431
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc
Q 000566 733 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 784 (1416)
Q Consensus 733 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~ 784 (1416)
.+|+|||+|.. +..||.+|++.+++
T Consensus 54 ---------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 54 ---------------------------NRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred ---------------------------CCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 14699999987 55799999999987
No 241
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=71.79 E-value=24 Score=46.95 Aligned_cols=39 Identities=31% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHH
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~ 693 (1416)
.|-.-|+.|+...+.-+.- .++--..|.|||-++.+||-
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIk 707 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIK 707 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHH
Confidence 5778999999988865542 46667799999988877763
No 242
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=71.63 E-value=12 Score=47.74 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=29.8
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc-------ccC-cEEEeecccCCCChHHHHhh
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 938 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L-------~ak-~RwlLTGTPIqN~l~DLysl 938 (1416)
.+..|||||||. .|-.+..+..| +.. +.+++|||-=-..+.+++.-
T Consensus 163 kYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 367899999994 44444444333 333 67889999765555655554
No 243
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=71.57 E-value=13 Score=48.96 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVLL 1337 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~--An~VI~ 1337 (1416)
.|++|.|||.-..+.+++++.....+..++.+++..+..+ ++.| .+.+|++-+ .+..+|+++-. -+.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEEe-ceEEEEeccchhhceEEEE
Confidence 7899999999999999999999999999999988766552 2333 458888866 77788888853 466666
Q ss_pred E--cCCCCcCh--HHHHHHhhhccCCCC
Q 000566 1338 L--DLWWNPTT--EDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1338 ~--Dp~WNPa~--e~QAiGRvhRIGQtr 1361 (1416)
| .-..-|.. ..|.+|||..+...+
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 5 22233553 589999999987654
No 244
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=68.61 E-value=36 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.7
Q ss_pred cEEEecCCCchHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALI 692 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI 692 (1416)
.||+-+.|.|||.+.=-++
T Consensus 68 vii~getGsGKTTqlP~~l 86 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFL 86 (845)
T ss_pred EEEeCCCCCChHHHHHHHH
Confidence 6999999999998874444
No 245
>PHA02533 17 large terminase protein; Provisional
Probab=68.50 E-value=45 Score=42.76 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.7
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 646 l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
...+|.|+|+.-+.+|... +=.++.=-=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHHH
Confidence 4567999999998887421 11245555589999988665543
No 246
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=67.34 E-value=20 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.3
Q ss_pred CcEEEecCCCchHHHHHHHHH
Q 000566 673 GGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 673 GGILADEMGLGKTl~aIALI~ 693 (1416)
-.|+|-|+|.|||.|.=-++.
T Consensus 273 vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred eEEEecCCCCCccccchHHHH
Confidence 379999999999999855553
No 247
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=66.37 E-value=3.3 Score=36.22 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=31.9
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1145 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1145 (1416)
..|-.|.......++.+|||++|..|..-.-. +.|| .|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---ngCP--fC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---NGCP--FCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhhc---cCCC--CCCCcccC
Confidence 45667777777788899999999999876443 4566 46666544
No 248
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=65.97 E-value=3.1 Score=50.95 Aligned_cols=46 Identities=37% Similarity=0.930 Sum_probs=38.2
Q ss_pred cccccCCCCCCcchhc-ccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000566 1097 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1145 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit-~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1145 (1416)
-.|++|..+..+|+.+ .|||.||..|+.+++.. ...||. |...+..
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~--~~~~~~~ 68 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV--CRQELTQ 68 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc--cccccch
Confidence 4699999999999985 99999999999999988 677885 5444433
No 249
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=64.99 E-value=12 Score=47.84 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccccCccccCEEEEEc----C
Q 000566 1272 KMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLD----L 1340 (1416)
Q Consensus 1272 ~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~-d~~v~VLL~StkaGg~GLNLq~An~VI~~D----p 1340 (1416)
.+.+.|...|.+. ++.++-|+..++.+-..++ |+. .++++=.|++|..+...|....-.+||=.. -
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 3566777776542 6778889999987666555 763 456777788889999998888777776321 1
Q ss_pred CCCc-----------ChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000566 1341 WWNP-----------TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380 (1416)
Q Consensus 1341 ~WNP-----------a~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~ 1380 (1416)
.+|| -.-+||--|++|-|.+.|-+-|||+++++..+.|+.
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 2444 355688888889999999999999999988776654
No 250
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=64.74 E-value=93 Score=37.31 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=34.7
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
..+||||......+.+.......+.+-++.-..|+||+..|.+++..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~ 49 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEH 49 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH
Confidence 45899999887777665443323345678899999999999888754
No 251
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=63.53 E-value=24 Score=40.07 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
.-||+-|.+-+..|.+-. ...+.++=--||-|||-..+=+++.
T Consensus 22 iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~ 64 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLAL 64 (229)
T ss_pred ceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHH
Confidence 358999999999998632 2255788899999999777655544
No 252
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.30 E-value=16 Score=44.39 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=65.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCccccc-CCCEEEEechhhhccCCCCCCCCchhHHHHh
Q 000566 762 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSV-LVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 838 (1416)
Q Consensus 762 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~V-lvy~G~~r~kd~~~L~-~~DVVITTY~~l~~e~~k~~~~~~~de~ek~ 838 (1416)
..||+.|.. |..|-.+=++..-. .-.++. +.|+|.........+. +-||||.|-..+..-.-+
T Consensus 92 RalilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve------------- 157 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE------------- 157 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-------------
Confidence 479999997 55555444443322 123544 4667766555445554 789999988776421000
Q ss_pred hhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCccccCC--hhhHHHHHHHhcc
Q 000566 839 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR 916 (1416)
Q Consensus 839 ~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~~~~~~pL~~i~W~rVIlDEAH~IKN--~~S~~skal~~L~ 916 (1416)
-.|.--...+||+|||..|-. ..-+..+.+.++.
T Consensus 158 --------------------------------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 158 --------------------------------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred --------------------------------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 001122234699999999844 3456667777774
Q ss_pred -cCcEEEeeccc
Q 000566 917 -AKRRWCLSGTP 927 (1416)
Q Consensus 917 -ak~RwlLTGTP 927 (1416)
....+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 44689999994
No 253
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=62.43 E-value=2.7 Score=53.39 Aligned_cols=79 Identities=10% Similarity=0.152 Sum_probs=50.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCc-------EEecCCCCCHHHHHHHHHHHhcC--CCccEEEeec--cccccccCcc
Q 000566 1262 EKAIVFSQWTKMLDLLEASLKDSSIQ-------YRRLDGTMSVFARDKAVKDFNTL--PEVSVMIMSL--KAASLGLNMV 1330 (1416)
Q Consensus 1262 ~KvIVFSq~t~~LdlLe~~L~~~gI~-------~~rldGsms~~qR~~aI~~Fn~d--~~v~VLL~St--kaGg~GLNLq 1330 (1416)
.-||+|-..-..|..+....+..||- -+.+--.-+ -+++++.|... .+.-.||++. .-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 67899999999999999999987763 122222222 35667777542 1122445453 3347999998
Q ss_pred c--cCEEEEEcCCCC
Q 000566 1331 A--ACHVLLLDLWWN 1343 (1416)
Q Consensus 1331 ~--An~VI~~Dp~WN 1343 (1416)
+ +..|+++.+|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 3 566777888774
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=62.31 E-value=5.7 Score=40.01 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.2
Q ss_pred cEEEEcCccccCChhhHHHHHHHhc--ccCcEEEeeccc
Q 000566 891 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 927 (1416)
Q Consensus 891 ~rVIlDEAH~IKN~~S~~skal~~L--~ak~RwlLTGTP 927 (1416)
.+|||||||.+. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 23444555555 667789999999
No 255
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.49 E-value=3.9 Score=48.96 Aligned_cols=45 Identities=31% Similarity=0.829 Sum_probs=32.5
Q ss_pred ccccccCCCCCCcc--------hhcccCcccchhhhhhhhccCC------CCCCCcccccc
Q 000566 1096 LAICGICNDPPEDA--------VVSICGHVFCNQCICERLTADD------NQCPTRNCKIR 1142 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~--------vit~CgHifC~~Ci~e~l~~~~------~~Cp~~~C~~~ 1142 (1416)
...|+||.+..... ++.+|.|.||..||..|..... ..|| .|+..
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP--~CRv~ 219 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCP--FCRVP 219 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCC--cccCc
Confidence 46799998865433 3478999999999999984433 4577 46654
No 256
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=61.25 E-value=21 Score=41.15 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.7
Q ss_pred cEEEecCCCchHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALI 692 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI 692 (1416)
-||.-..|.|||..|-++.
T Consensus 45 vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILG 63 (261)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999885554
No 257
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=60.58 E-value=24 Score=47.26 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=83.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEE
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHV 1335 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkaGg~GLNLq~An~V 1335 (1416)
..-+|||-.=..-++-....|.+ ..+.++-++|.++.++..+ -|+..++- +=+|+||..+-.+|......+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 35689998888888877777876 3577899999999988887 47776554 4255588999999998887777
Q ss_pred EEE----cCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1336 LLL----DLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1336 I~~----Dp~WNPa-----------~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
|=- .+-|||. .-..|.-|++|-|.+.+=..|||+.++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 521 1224443 344677778888888888999999986655
No 258
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=3.8 Score=49.84 Aligned_cols=46 Identities=28% Similarity=0.713 Sum_probs=35.5
Q ss_pred ccccccCCCCCC-----------------cchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000566 1096 LAICGICNDPPE-----------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1096 ~~~C~iC~d~~~-----------------~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
...|.||..+.+ .-.+++|.|+|-.+|+..|+....-.||. |+..|
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPv--CR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPV--CRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCc--cCCCC
Confidence 367999987632 23568999999999999999877778985 65443
No 259
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.62 E-value=1e+02 Score=40.45 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+|=+..+..++...+ ....-||.-..|.|||..|.+++..
T Consensus 21 e~vv~~L~~aI~~gr---l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 21 NHVSRALSSALERGR---LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555554322 1234599999999999888766643
No 260
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.99 E-value=23 Score=40.35 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=44.1
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cccc-CCCEEEEechhhhc
Q 000566 762 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELA-KFDVVITTYSIVSM 821 (1416)
Q Consensus 762 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~-~~L~-~~DVVITTY~~l~~ 821 (1416)
..||+|-+. |..|-..|..++..--+..+|-+|.|.-..+.- ..|. -..||+-|...+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA 174 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA 174 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH
Confidence 479999886 678999998887766668999999988665533 3333 34688888777654
No 261
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.36 E-value=1.1e+02 Score=38.56 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.3
Q ss_pred cEEEecCCCchHHHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI~~ 694 (1416)
-|+.-+.|.|||..|..++..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 489999999999988777643
No 262
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.05 E-value=1.5e+02 Score=37.89 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=31.5
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEeecccCCCChHHHHhhhhhccCCCc
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 947 (1416)
+|.++||||+|++-.. .....++.| ....+++|..|-.+.-+.-+.+-...+...++
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 4678999999998542 222333334 34556676666544444445444333333333
No 263
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.27 E-value=6.2 Score=44.20 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhc
Q 000566 1097 AICGICNDPPEDAVVSICGHVFCNQCICERLT 1128 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~ 1128 (1416)
.-|..|..|..+||+++-||+||++||.+++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 56999999999999999999999999999853
No 264
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.22 E-value=1.4e+02 Score=40.42 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=24.5
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEeecccCCC
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQN 930 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~L---~ak~RwlLTGTPIqN 930 (1416)
+|.++||||||++.. ......++.| ....+++|..|-...
T Consensus 119 k~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 119 RFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred CcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 467899999999942 2223334444 355677777554443
No 265
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.01 E-value=5.9 Score=44.70 Aligned_cols=44 Identities=32% Similarity=0.803 Sum_probs=29.3
Q ss_pred ccccCCCCCC-cc-hhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000566 1098 ICGICNDPPE-DA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1146 (1416)
Q Consensus 1098 ~C~iC~d~~~-~~-vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1146 (1416)
.|..|...+. ++ .+|.|+|+||..|..-.... .|+ .|+..+...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~--lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCP--LCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCcc---ccc--cccceeeee
Confidence 4777765433 33 58999999999998654332 566 477665443
No 266
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=53.70 E-value=5.5 Score=46.53 Aligned_cols=46 Identities=24% Similarity=0.667 Sum_probs=37.4
Q ss_pred ccccccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000566 1096 LAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1142 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~-vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~ 1142 (1416)
...|++|.....+| ++..-|-+||..|+..++. .-+.||..+|...
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 46799998876554 6777899999999999998 6678998888754
No 267
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=49.35 E-value=3.5e+02 Score=37.49 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHH-hhccCCCCCCcEEEecCCCchHHHHHHH
Q 000566 649 PLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIAL 691 (1416)
Q Consensus 649 ~L~phQk~al~wMl~-~E~~~~~~~GGILADEMGLGKTl~aIAL 691 (1416)
+=+.||-.|+.-... +++....+.=||-.-.+|.|||+.=.-+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARI 451 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARA 451 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHH
Confidence 346799999887665 3333323233777889999999976333
No 268
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=48.89 E-value=1.1e+02 Score=40.09 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=27.4
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCCC
Q 000566 761 AGTLVVCPTS-VLRQWAEELRNKV-T-SKGSLSVLVYHGSSRTK 801 (1416)
Q Consensus 761 ~~TLIVcP~S-LL~QW~~EI~k~~-~-~~~~L~Vlvy~G~~r~k 801 (1416)
+++||.+|+. |..|+.+++.... . ....+++.+..|....-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nYl 90 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEFV 90 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcccc
Confidence 3589999985 6689998887543 1 12357777777765443
No 269
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.11 E-value=7.5 Score=46.14 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=36.9
Q ss_pred ccccccCCCCCCcchhcccCcc-cchhhhhhhhccCCCCCCCcccccccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHi-fC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1144 (1416)
-..|-||...+.+.++.+|.|+ +|..|-.... --.+.|| .|+..+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CP--ICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCP--ICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCC--ccccchH
Confidence 3579999999999999999997 7899987765 3456688 4887654
No 270
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=47.79 E-value=12 Score=49.38 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=24.5
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCc-EEE-ecCCCchHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGG-ILA-DDQGLGKTISTI 689 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GG-ILA-DEMGLGKTl~aI 689 (1416)
..-|+-|.+-+..+.+-........++ +++ -.+|.|||+--|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 357889998666666543321000122 333 379999998754
No 271
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=47.65 E-value=2e+02 Score=37.93 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=31.0
Q ss_pred cCCCCcEEEEE--EEeCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1357 IGQTRPVSVLR--LTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1357 IGQtr~V~Vyr--Li~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
+|+.-.+.|.. =....|--++-....+.|++.+...+-.|. .++.|...|+
T Consensus 584 ~g~~~~l~i~~~~~~~~~tp~~~~~~~~~~~~~~a~~~~~~Dp--------~v~~l~~~f~ 636 (647)
T PRK07994 584 LGRTVELTIEEDDNPAVETPLEWRQRIYEEKLAQAEESIIADP--------NIQTLRQFFD 636 (647)
T ss_pred hCCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHHHHHHHhCH--------HHHHHHHHcC
Confidence 67776666653 122346666666666677777777776554 3555655554
No 272
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.28 E-value=2.4e+02 Score=34.31 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.3
Q ss_pred cEEEecCCCchHHHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI~~ 694 (1416)
-||.-+.|+|||..+.+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 489999999999888777643
No 273
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=46.77 E-value=1.6e+02 Score=32.76 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=17.0
Q ss_pred CCcEEEecCCCchHHHHHHHH
Q 000566 672 SGGILADDQGLGKTISTIALI 692 (1416)
Q Consensus 672 ~GGILADEMGLGKTl~aIALI 692 (1416)
..-+|--+.|.|||..+.++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 446788899999999887665
No 274
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=46.54 E-value=38 Score=39.74 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.8
Q ss_pred CcEEEecCCCchHHHHHHHHH
Q 000566 673 GGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 673 GGILADEMGLGKTl~aIALI~ 693 (1416)
+-+|--+.|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457889999999998866653
No 275
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=46.40 E-value=79 Score=33.18 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=56.9
Q ss_pred eEEEEcccHHHHHHHHHHHHhcCCcE--EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000566 1263 KAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1340 (1416)
Q Consensus 1263 KvIVFSq~t~~LdlLe~~L~~~gI~~--~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp 1340 (1416)
.|=++||.-.+...|...+...|+.+ +.=.|....-.-.++++.|.+||+.+|+++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999999999887664 5556665555678899999999999999876 666
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000566 1341 WWNPTTEDQAIDRAHRIGQTRPVSVLRL 1368 (1416)
Q Consensus 1341 ~WNPa~e~QAiGRvhRIGQtr~V~VyrL 1368 (1416)
-=||....++.-|+.|- |||.+++-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 66787777887777764 88887654
No 276
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.36 E-value=1.5e+02 Score=37.45 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+|-...+..++.... .+.+-||.-..|.|||..|-+++..
T Consensus 20 ~~i~~~L~~~i~~~~---l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 20 DHVKKLIINALKKNS---ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455555666654332 1233489999999999988776643
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=45.82 E-value=3.9e+02 Score=28.52 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcC
Q 000566 654 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 696 (1416)
Q Consensus 654 Qk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r 696 (1416)
|...+..+.+.-.....+..-|+.-.-|.||+-.+.+++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444444443333222223347888899999999999986543
No 278
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=45.62 E-value=29 Score=42.46 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=35.0
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcC-CCCcEEEEEeCC-CCCCC-cccccCCCEEEEechhhhcc
Q 000566 763 TLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGS-SRTKD-PCELAKFDVVITTYSIVSME 822 (1416)
Q Consensus 763 TLIVcP~S-LL~QW~~EI~k~~~~-~~~L~Vlvy~G~-~r~kd-~~~L~~~DVVITTY~~l~~e 822 (1416)
.+|+||+. |..|-...|.+.+.. ...++++-.... +.... ..-....||||+|...+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 69999986 778888888765431 113333333211 11111 12234679999999887643
No 279
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=44.40 E-value=11 Score=43.68 Aligned_cols=43 Identities=33% Similarity=0.721 Sum_probs=29.8
Q ss_pred hccccccCCCCCCc-chhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000566 1095 SLAICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1142 (1416)
Q Consensus 1095 ~~~~C~iC~d~~~~-~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~ 1142 (1416)
....|.-|..+..- -.+.+|.|+||.+|-...- +..|| .|..+
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp--~C~d~ 132 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICP--LCDDR 132 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhhcCc---cccCc--CcccH
Confidence 35779999887654 3578999999999975432 34566 35444
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.29 E-value=2.7e+02 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCcEE-EecCCCchHHHHHHHH
Q 000566 650 LLRHQRIALSWMVQKETSSLHCSGGIL-ADDQGLGKTISTIALI 692 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~~~~~~~GGIL-ADEMGLGKTl~aIALI 692 (1416)
..++.+..+...+++.. ....+| .-+.|.|||-.+-++.
T Consensus 25 ~~~~~~~~l~~~~~~~~----~~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 25 LPAADKETFKSIVKKGR----IPNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred CcHHHHHHHHHHHhcCC----CCeEEEeeCcCCCCHHHHHHHHH
Confidence 44555555554444322 123455 8999999998886665
No 281
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=42.47 E-value=27 Score=46.52 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-----CCcChHHHHHHhhhccCC-CC
Q 000566 1288 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-----WNPTTEDQAIDRAHRIGQ-TR 1361 (1416)
Q Consensus 1288 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~-----WNPa~e~QAiGRvhRIGQ-tr 1361 (1416)
+...+.+.+.++|+-+=..|++ +.++|++.+ .....|+||.+ .+||+=-|. -.-....|.+||++|.|= |.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~-g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE-GNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHh-cCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 4456778888899877778887 778888754 55899999985 555554433 234467799999999974 33
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCcc
Q 000566 1362 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1398 (1416)
Q Consensus 1362 ~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~ 1398 (1416)
.--+ |+++..=..++.++...-......-++++..
T Consensus 602 Gdsi--LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~ 636 (1008)
T KOG0950|consen 602 GDSI--LIIKSSEKKRVRELVNSPLKPLNSCLSNEVN 636 (1008)
T ss_pred cceE--EEeeccchhHHHHHHhccccccccccccccc
Confidence 2222 3444333344445544444444444444433
No 282
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.90 E-value=3.2e+02 Score=36.31 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=33.0
Q ss_pred hccCCCCcEEEEEEE---eCCCHHHHHHHHHHHHHHHHHHHhCCCccCcccccCCHHHHHHhhc
Q 000566 1355 HRIGQTRPVSVLRLT---VKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1355 hRIGQtr~V~VyrLi---~kdTIEErIl~lq~~K~~l~~~~~g~d~~~~~~~~lt~~DL~~Lf~ 1415 (1416)
.++|..-.|.|.-+. ...|--.+--++++.+++-+..++..|. .++.|...|+
T Consensus 639 ~~~g~~~~~~~~~~~~~~~~eTpa~~~~~~~~~~~~~a~~~~~~D~--------~vq~l~~~f~ 694 (709)
T PRK08691 639 QAYGLQLTLQTQDWRDEAGRETPAMQDKRVQAEDRQKAQALLEADP--------AAQKILQAFG 694 (709)
T ss_pred HHhCCCeEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHhhcCH--------HHHHHHHHhc
Confidence 345654445555333 2346666777777777777777876664 4666666665
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.60 E-value=10 Score=45.58 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=41.8
Q ss_pred ccccccCCCCCCcc-----hhcccCcccchhhhhhhhcc-CCCCCCCccccccccccchhhhhhhcc
Q 000566 1096 LAICGICNDPPEDA-----VVSICGHVFCNQCICERLTA-DDNQCPTRNCKIRLSLSSVFSKATLNN 1156 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~-----vit~CgHifC~~Ci~e~l~~-~~~~Cp~~~C~~~l~~~~vf~~~~l~~ 1156 (1416)
...|++|.+.-+.+ +...|||.|-.+||+.|+.. ..-+|| .|+..-....++....++.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp--~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCP--LCSGKATKRQIRPEYALRV 68 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCc--ccCChhHHHHHHHHHHHHH
Confidence 35799999875543 45789999999999999952 123577 4877766666665554433
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=47 Score=42.03 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHhhc-----cCCCCCCcEEEecCCCchHHHHHHHHH
Q 000566 650 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 650 L~phQk~al~wMl~~E~-----~~~~~~GGILADEMGLGKTl~aIALI~ 693 (1416)
.....++++.|.+.+.. ....++|.||.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45677888888877655 233557899999999999999877764
No 285
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=41.10 E-value=1.2e+02 Score=42.10 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=35.3
Q ss_pred CcEEEEeChhhH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000566 761 AGTLVVCPTSVL-----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 820 (1416)
Q Consensus 761 ~~TLIVcP~SLL-----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~~l~ 820 (1416)
+...-+.|...+ +-|..-+.+ ...+.+....| .+.-+.+.+.+.+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~----~~G~~~~~l~g-e~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSK----LLGLRIVKLTG-ETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcc----ccCceEEecCC-ccccchHHhhhcceEEechhHHH
Confidence 346778888754 345555442 23455555544 45566777889999999987764
No 286
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=14 Score=45.22 Aligned_cols=53 Identities=38% Similarity=0.854 Sum_probs=38.6
Q ss_pred ccccccCC-CCCCc---chhcccCcccchhhhhhhhcc-----CCCCCCCccccccccccch
Q 000566 1096 LAICGICN-DPPED---AVVSICGHVFCNQCICERLTA-----DDNQCPTRNCKIRLSLSSV 1148 (1416)
Q Consensus 1096 ~~~C~iC~-d~~~~---~vit~CgHifC~~Ci~e~l~~-----~~~~Cp~~~C~~~l~~~~v 1148 (1416)
...|.+|. +.+.. ..+..|+|-||.+|+..++.. ....||...|...+.....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 35799998 33222 246789999999999988763 4558999999888765543
No 287
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=40.83 E-value=64 Score=43.23 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=30.7
Q ss_pred cEEEEeChhhHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000566 762 GTLVVCPTSVLRQ-WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 820 (1416)
Q Consensus 762 ~TLIVcP~SLL~Q-W~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~~l~ 820 (1416)
..|.+.|--.+-| =..++..+.. +-.+.|--|.|.. ........-++.|.|.+.-.
T Consensus 271 ~~llilp~vsiv~Ek~~~l~~~~~-~~G~~ve~y~g~~--~p~~~~k~~sv~i~tiEkan 327 (1008)
T KOG0950|consen 271 NVLLILPYVSIVQEKISALSPFSI-DLGFPVEEYAGRF--PPEKRRKRESVAIATIEKAN 327 (1008)
T ss_pred ceeEecceeehhHHHHhhhhhhcc-ccCCcchhhcccC--CCCCcccceeeeeeehHhhH
Confidence 3677778654444 3344444433 4467777777643 22233345567787765543
No 288
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=40.67 E-value=1.2e+02 Score=39.96 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=51.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 727 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 727 (1416)
..|.++|..++.-+.+.-.... +..+|---.|-|||+.+.+++...
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~~-------------------------------- 56 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIARL-------------------------------- 56 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 4577899999988876543221 124667778999999876655221
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc
Q 000566 728 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 784 (1416)
Q Consensus 728 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~ 784 (1416)
.+++|||+|.. ...||.+++..+++
T Consensus 57 --------------------------------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 57 --------------------------------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 13589999986 67899999998876
No 289
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.38 E-value=1.5e+02 Score=39.37 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=57.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
.+.++||.+.-......+.+.|++ .|+.+..++|+++..+|.+...+... ++++|+|.+..+. =+.+..-..||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEE
Confidence 467899999999998888888876 48899999999999999888887776 5678888654332 2344555556554
Q ss_pred c
Q 000566 1339 D 1339 (1416)
Q Consensus 1339 D 1339 (1416)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 4
No 290
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=16 Score=44.13 Aligned_cols=46 Identities=24% Similarity=0.613 Sum_probs=34.5
Q ss_pred hccccccCCCCC---CcchhcccCcccchhhhhhhhccCC--CCCCCcccccc
Q 000566 1095 SLAICGICNDPP---EDAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIR 1142 (1416)
Q Consensus 1095 ~~~~C~iC~d~~---~~~vit~CgHifC~~Ci~e~l~~~~--~~Cp~~~C~~~ 1142 (1416)
+..+|++--+-. ..|+...|||++|.+.+...-.+.. .+||. |...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCcc
Confidence 457788875532 2368899999999999999887776 78885 6544
No 291
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=39.26 E-value=1.8e+02 Score=39.05 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.7
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 692 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI 692 (1416)
..|-+-|+.|+.-++... +=.+|---.|.|||.++-+++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHH
Confidence 458899999999887421 125888899999998876665
No 292
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.71 E-value=1.5e+02 Score=37.89 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=56.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1338 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~ 1338 (1416)
.+.++||.+........+.+.|++. |..+..++|+++..+|.+...+-.. ++..|+|.+..+. =+-+.....||+=
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrsal--f~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRSAL--FLPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChHHH--cCcccCCCEEEEE
Confidence 4678999999999988888888764 7889999999999999888777665 5677777553332 2334455555554
Q ss_pred c
Q 000566 1339 D 1339 (1416)
Q Consensus 1339 D 1339 (1416)
|
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 4
No 293
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=38.25 E-value=25 Score=41.79 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=34.5
Q ss_pred hhhccccccCCCCCC-------------cchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000566 1093 EASLAICGICNDPPE-------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1093 e~~~~~C~iC~d~~~-------------~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
-.+...|.||.|..- .|--.+|||++=..|+..|+.+. ..||. |+-.+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPI--Cr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPI--CRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCc--ccCcc
Confidence 445678999988632 13457999999999999988654 35774 66553
No 294
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=14 Score=44.10 Aligned_cols=42 Identities=40% Similarity=0.914 Sum_probs=31.8
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000566 1096 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1143 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l 1143 (1416)
...|.+|.+.+.+.++.+|||+-| |........ +|| .|+..+
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l~--~CP--vCR~rI 346 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHLP--QCP--VCRQRI 346 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHHhhCC--CCc--hhHHHH
Confidence 467999999999999999999977 665544332 377 477654
No 295
>PF04641 Rtf2: Rtf2 RING-finger
Probab=36.99 E-value=22 Score=41.28 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=36.1
Q ss_pred ccccccCCCCCCc----chhcccCcccchhhhhhhhccCCCCCCCccccccccccchh
Q 000566 1096 LAICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1149 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~----~vit~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf 1149 (1416)
...|+++...... ..+-+|||+||..|+.+.. ....|| .|...+....++
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~DiI 166 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEEDII 166 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccCCEE
Confidence 4679999877632 2457999999999999984 455687 487776654443
No 296
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=36.82 E-value=1.3e+02 Score=27.02 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=40.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000566 1263 KAIVFS-QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319 (1416)
Q Consensus 1263 KvIVFS-q~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1319 (1416)
|++||+ .+=.....+...|++.+++|..++-......++++++.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466776 334567778888999999998888887777777777666553255555544
No 297
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=36.12 E-value=1e+02 Score=40.78 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH----HhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASL----KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1335 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L----~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~V 1335 (1416)
.+.+++|.+.-...+..+...| ...|+++..++|+++.++|.+.++...+ +++.|+|.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 5678999998887766655554 4458999999999999999999999887 6788888765555555556555555
Q ss_pred EE
Q 000566 1336 LL 1337 (1416)
Q Consensus 1336 I~ 1337 (1416)
|+
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 44
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=35.50 E-value=73 Score=37.53 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.7
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI~ 693 (1416)
-+|--..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999999877753
No 299
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.05 E-value=18 Score=40.78 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=30.3
Q ss_pred cccccCCCCCCc----chhcccCcccchhhhhhhhccCCCCCC
Q 000566 1097 AICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCP 1135 (1416)
Q Consensus 1097 ~~C~iC~d~~~~----~vit~CgHifC~~Ci~e~l~~~~~~Cp 1135 (1416)
.+|++|-+...+ +++.+|||++|.+|+..++..|- .||
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~p 263 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDP 263 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-ccc
Confidence 579999887655 47899999999999998887653 455
No 300
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=34.70 E-value=1.2e+02 Score=28.99 Aligned_cols=59 Identities=8% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000566 1260 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319 (1416)
Q Consensus 1260 ~~~KvIVFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1319 (1416)
...+|+||+. |=..-..+.+.|+..|+.|..++=....+.|+.+.+ ......+.++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 4689999987 556778888999999999988875555444444444 3332343444434
No 301
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.28 E-value=48 Score=44.03 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
++||.|++....+.+-...+ ..++|--.+|.|||+.+|+-.++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 47999999888877655533 34788889999999999877665
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.12 E-value=5e+02 Score=34.11 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+|=+.-+..++...+ ....-|+.-..|.|||..|..++..
T Consensus 22 e~v~~~L~~ai~~~r---i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 22 ETVKAILSRAAQENR---VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHHHHHHHcCC---CCceEEEECCCCCCHHHHHHHHHHh
Confidence 344455555554322 1234567999999999988777644
No 303
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=32.74 E-value=1.3e+02 Score=29.32 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=40.0
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEE
Q 000566 1260 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1317 (1416)
Q Consensus 1260 ~~~KvIVFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL 1317 (1416)
...||+||+. |=..-..+...|...|++|..++=....+.|+.+.+......=+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 5689999975 445677888899999999988876555666666655544322344444
No 304
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.48 E-value=5.5e+02 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHH
Q 000566 653 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 653 hQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~ 693 (1416)
|-.+.+..++...+ ....-||.-..|.|||..|..+..
T Consensus 20 ~vv~~L~~a~~~~r---i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 20 VLVRILRNAFTLNK---IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHHHHHHHHcCC---CCceEEEECCCCccHHHHHHHHHH
Confidence 44444544443322 234578899999999998766653
No 305
>PF13245 AAA_19: Part of AAA domain
Probab=32.32 E-value=58 Score=30.43 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.5
Q ss_pred EEEecCCCchHHHHHHHHHHc
Q 000566 675 ILADDQGLGKTISTIALILKE 695 (1416)
Q Consensus 675 ILADEMGLGKTl~aIALI~~~ 695 (1416)
++---.|.|||.+++.++...
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 446778999998888888653
No 306
>PF13173 AAA_14: AAA domain
Probab=32.04 E-value=46 Score=33.83 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=24.6
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCC
Q 000566 891 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 930 (1416)
Q Consensus 891 ~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN 930 (1416)
.+|||||+|++.+-....- .+..-....++++||.-...
T Consensus 63 ~~i~iDEiq~~~~~~~~lk-~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALK-FLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred cEEEEehhhhhccHHHHHH-HHHHhccCceEEEEccchHH
Confidence 4699999999976432222 22221235789999985433
No 307
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.79 E-value=4.3e+02 Score=33.99 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 652 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 652 phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
+|-+..+..++...+ ....-|+.-..|.|||..+..+...
T Consensus 22 ~~v~~~L~~~i~~~~---~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 22 EHVVRALTNALEQQR---LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHHHHHHHHHHHcCC---CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555554322 1133478999999999887666543
No 308
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=18 Score=41.26 Aligned_cols=52 Identities=29% Similarity=0.733 Sum_probs=38.1
Q ss_pred cccccCCCCCC-----cc-----hhcccCcccchhhhhhhh-ccCCCCCCCccccccccccchhh
Q 000566 1097 AICGICNDPPE-----DA-----VVSICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFS 1150 (1416)
Q Consensus 1097 ~~C~iC~d~~~-----~~-----vit~CgHifC~~Ci~e~l-~~~~~~Cp~~~C~~~l~~~~vf~ 1150 (1416)
..|.+|..... +. .-..|+|+|=.-||..|- -+....||. |+.++....+|+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY--CKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY--CKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch--HHHHhhHhhhcc
Confidence 46888865422 22 236899999999999985 456678995 998888777774
No 309
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=30.76 E-value=1.6e+02 Score=40.43 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=34.5
Q ss_pred CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000566 1312 EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1362 (1416)
Q Consensus 1312 ~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~ 1362 (1416)
+..++|++|.....|+++- .+.+|. ||. --...+|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 3556777999999999986 344433 332 23578999999999998654
No 310
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=30.29 E-value=2.9e+02 Score=33.26 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHc
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 695 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~ 695 (1416)
++||||.....-|+++.+ .+..-++.-..|+|||..|.+++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r---~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGR---HPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCC---cceeeeeECCCCCCHHHHHHHHHHHH
Confidence 469999999999987733 22445678999999999998887554
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=30.09 E-value=2.9e+02 Score=34.82 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.1
Q ss_pred CCcEEEecCCCchHHHHHHHH
Q 000566 672 SGGILADDQGLGKTISTIALI 692 (1416)
Q Consensus 672 ~GGILADEMGLGKTl~aIALI 692 (1416)
.+-+|--+.|+|||-.+-|+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~ 162 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAK 162 (450)
T ss_pred CceEEECCCCCcHHHHHHHHH
Confidence 446789999999997665554
No 312
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.80 E-value=34 Score=42.89 Aligned_cols=51 Identities=27% Similarity=0.660 Sum_probs=39.7
Q ss_pred ccccccCCCCCCc-chhcccCcccchhhhhhhhccC----C---CCCCCcccccccccc
Q 000566 1096 LAICGICNDPPED-AVVSICGHVFCNQCICERLTAD----D---NQCPTRNCKIRLSLS 1146 (1416)
Q Consensus 1096 ~~~C~iC~d~~~~-~vit~CgHifC~~Ci~e~l~~~----~---~~Cp~~~C~~~l~~~ 1146 (1416)
...|++|.+.... .+...|+|.||..|+..+++.. . .+||...|......+
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 3679999888775 6678999999999999987652 1 368998998776543
No 313
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=29.61 E-value=1.5e+02 Score=40.39 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-------CCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccc
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVA 1331 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkaGg~GLNLq~ 1331 (1416)
...-||||-.-..-+..+...|..+ .+-+..++++|+..+.+++ |+..+ +++=+|++|..+...+..-.
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccC
Confidence 4568999999888888888888642 2557889999998877766 77654 44556668899999988877
Q ss_pred cCEEE--------EEcCCC----------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000566 1332 ACHVL--------LLDLWW----------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1375 (1416)
Q Consensus 1332 An~VI--------~~Dp~W----------NPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIE 1375 (1416)
.-+|| .|||.- .-+.-.||.||++ ..++=..|+|+++.-.+
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG---Rv~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG---RVRPGICYHLYTRSRYE 547 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc---CccCCeeEEeechhhhh
Confidence 76665 344432 2223446555555 45666788888765433
No 314
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=29.29 E-value=7.6 Score=52.20 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=58.7
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCC
Q 000566 1264 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1343 (1416)
Q Consensus 1264 vIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~~Dp~WN 1343 (1416)
+++|+....++.+|...+ ...+.+...+...++.+|... +....+.+|.+|..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~--------~~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFL--------VDHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhh--------hhHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 788999999999988865 112222233333333333331 35577889999998899999999999
Q ss_pred cChHHHHHHhhhccCCC
Q 000566 1344 PTTEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1344 Pa~e~QAiGRvhRIGQt 1360 (1416)
| .+|+++|.++++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999995
No 315
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=28.91 E-value=1.4e+02 Score=39.13 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1335 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~V 1335 (1416)
.+.+++|-+.....+..+.+.++ ..|+++..++|+++.++|...++...+ +++.|+|.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 46788888888777776655554 458999999999999999999988876 6678888665544445555554444
Q ss_pred EE
Q 000566 1336 LL 1337 (1416)
Q Consensus 1336 I~ 1337 (1416)
|+
T Consensus 362 VI 363 (630)
T TIGR00643 362 II 363 (630)
T ss_pred EE
Confidence 43
No 316
>PLN03025 replication factor C subunit; Provisional
Probab=28.36 E-value=82 Score=37.52 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=33.6
Q ss_pred CccEEEEcCccccCChhh-HHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCc
Q 000566 889 GWFRVVLDEAQSIKNHRT-QVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S-~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 947 (1416)
.|..|||||+|.+-.... ...+.+.......+++|+.++...-+..|.+-...+...++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 478999999999853221 11122222234567888888765555555555444443333
No 317
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=27.07 E-value=2.4e+02 Score=36.87 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=20.6
Q ss_pred CCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhc
Q 000566 786 KGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 821 (1416)
Q Consensus 786 ~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~~l~~ 821 (1416)
+..++.+.|+|+.+.- ..+++|+..|+.|-.
T Consensus 306 Gk~~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~ 336 (821)
T KOG1133|consen 306 GKELRGCPYYASRRAV-----PQAQLVTLPYQLLLH 336 (821)
T ss_pred hhhcCCCCchhhhhcc-----ccccEEeccHHHHHh
Confidence 4456777777765543 356788888887754
No 318
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=26.71 E-value=2.3e+02 Score=39.09 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=62.9
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec----CCCCcChHHHHHHhhhccCCCC
Q 000566 1290 RLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1290 rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~----~D----p~WNPa~e~QAiGRvhRIGQtr 1361 (1416)
.-+++|=+.-|.-+=.-|+. +-++|++ .|...+.|+|+.+=+.|+- +| -|-+|.-..|--||++|-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~-GLvkvvF-aTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQE-GLVKVVF-ATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhc-cceeEEe-ehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 35788888899988889998 8888888 5599999999986655543 22 2457888999999999999998
Q ss_pred cEEEEEEEeCC
Q 000566 1362 PVSVLRLTVKN 1372 (1416)
Q Consensus 1362 ~V~VyrLi~kd 1372 (1416)
.-+|.......
T Consensus 527 ~G~vI~~~~~~ 537 (1041)
T COG4581 527 LGTVIVIEPPF 537 (1041)
T ss_pred cceEEEecCCC
Confidence 86665554433
No 319
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=25.97 E-value=5.9e+02 Score=34.91 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=32.2
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHc
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 695 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~ 695 (1416)
+.|-+.++..-+....+... -++.-|.|.|||.|.--+|+..
T Consensus 171 ~LPa~~~r~~Il~~i~~~qV-------vvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQV-------VVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred hCccHHHHHHHHHHHHhCce-------EEEeCCCCCCchhhhhHHHHHH
Confidence 44567777777777765433 5888999999999999998763
No 320
>PRK11054 helD DNA helicase IV; Provisional
Probab=25.90 E-value=1.2e+02 Score=40.17 Aligned_cols=38 Identities=24% Similarity=0.066 Sum_probs=27.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 648 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 648 ~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
.+|-+-|++||..-. ...++---.|.|||.++++-+++
T Consensus 195 ~~L~~~Q~~av~~~~---------~~~lV~agaGSGKT~vl~~r~ay 232 (684)
T PRK11054 195 SPLNPSQARAVVNGE---------DSLLVLAGAGSGKTSVLVARAGW 232 (684)
T ss_pred CCCCHHHHHHHhCCC---------CCeEEEEeCCCCHHHHHHHHHHH
Confidence 468999999996432 11234444899999999888765
No 321
>PHA03096 p28-like protein; Provisional
Probab=25.74 E-value=32 Score=40.38 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.4
Q ss_pred cccccCCCCCCc--------chhcccCcccchhhhhhhhccC
Q 000566 1097 AICGICNDPPED--------AVVSICGHVFCNQCICERLTAD 1130 (1416)
Q Consensus 1097 ~~C~iC~d~~~~--------~vit~CgHifC~~Ci~e~l~~~ 1130 (1416)
.+|++|++.... .+++.|.|.||..|+..|....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 689999986431 3568999999999999987664
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.63 E-value=3.8e+02 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.4
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI~ 693 (1416)
-|+.-|.|-|||.|.--++.
T Consensus 374 vvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 374 VVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred EEEEecCCCCchhhhHHHHH
Confidence 68899999999998755553
No 323
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=24.67 E-value=61 Score=31.24 Aligned_cols=44 Identities=34% Similarity=0.762 Sum_probs=30.6
Q ss_pred cccCCCCCCc-c-hhcccCcccchhhhhhhhccC--CCCCCCcccccccc
Q 000566 1099 CGICNDPPED-A-VVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLS 1144 (1416)
Q Consensus 1099 C~iC~d~~~~-~-vit~CgHifC~~Ci~e~l~~~--~~~Cp~~~C~~~l~ 1144 (1416)
|+.|..|..+ | +.-.|+|.|-..||.+++... ...||. |+....
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm--CR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM--CRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCC--cCCeee
Confidence 4444444433 3 456799999999999999864 567884 776543
No 324
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.56 E-value=54 Score=40.75 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.3
Q ss_pred cccCccEEEEcCccccCChhhHHHHHHHhc-------cc-CcEEEeecccCCCChHHHHhhhhhcc
Q 000566 886 AKVGWFRVVLDEAQSIKNHRTQVARACWGL-------RA-KRRWCLSGTPIQNAIDDLYSYFRFLR 943 (1416)
Q Consensus 886 ~~i~W~rVIlDEAH~IKN~~S~~skal~~L-------~a-k~RwlLTGTPIqN~l~DLyslL~FL~ 943 (1416)
.--.|..+|+||||. .|..+..+..| +. -+.+.+|+|-.-.++...|+-.-++.
T Consensus 156 ~l~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~ 217 (699)
T KOG0925|consen 156 LLGRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLA 217 (699)
T ss_pred ccccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeee
Confidence 345799999999994 55555555444 22 24688999988888877776555554
No 325
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=24.21 E-value=56 Score=28.10 Aligned_cols=42 Identities=24% Similarity=0.788 Sum_probs=21.1
Q ss_pred cccCCCCCCc--chh--cccCcccchhhhhhhhccCCCCCCCcccccc
Q 000566 1099 CGICNDPPED--AVV--SICGHVFCNQCICERLTADDNQCPTRNCKIR 1142 (1416)
Q Consensus 1099 C~iC~d~~~~--~vi--t~CgHifC~~Ci~e~l~~~~~~Cp~~~C~~~ 1142 (1416)
|++|.+.... .-+ =.|++-+|..|....+....+.||. |+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPg--Cr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPG--CREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TT--T--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCC--CCCC
Confidence 5667665421 122 3699999999999999888889994 7654
No 326
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=24.05 E-value=1.7e+02 Score=38.57 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.6
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
....|++|++.+.-+..-.... .++|+=-.+|.|||+..|+.++.
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~---~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGG---EGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC---CcEEEECCCCccHHHHHHHHHHH
Confidence 3468999999988887443321 34677788999999998877755
No 327
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=23.83 E-value=59 Score=39.34 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHH
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~ 694 (1416)
|.-.+|+-|+.-++.-+-. =..|.---|.|||+-|||..+.
T Consensus 228 prn~eQ~~ALdlLld~dI~-----lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 228 PRNAEQRVALDLLLDDDID-----LVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred cccHHHHHHHHHhcCCCCC-----eEEeeccCCccHhHHHHHHHHH
Confidence 4456999999988854332 1456677899999988777654
No 328
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=23.66 E-value=8.9e+02 Score=31.44 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.2
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000566 674 GILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 674 GILADEMGLGKTl~aIALI~ 693 (1416)
-|+.-.-|+|||..+-.+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46799999999998866653
No 329
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.77 E-value=2.1e+02 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=29.1
Q ss_pred EEEEeChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEech
Q 000566 763 TLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 817 (1416)
Q Consensus 763 TLIVcP~SL-L-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~ 817 (1416)
.|||||... . .--...++++++..+ +...+-+..- ......++|+||||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~-i~~~~~~~~~---~~~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELG-IEAEVEHTDL---GSAKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCC-CcEEEEEecc---cccCCCCCCEEEEchh
Confidence 699999864 3 334457777775333 2222222111 1122568999999975
No 330
>PHA00673 acetyltransferase domain containing protein
Probab=22.39 E-value=1.3e+02 Score=32.31 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.3
Q ss_pred ccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEeecccCCCChH
Q 000566 890 WFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 933 (1416)
Q Consensus 890 W~rVIlDEAH~IKN~~S~~skal~~L---~ak~RwlLTGTPIqN~l~ 933 (1416)
.+-|.+++.|+=+.-.++..+.+... +.-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45699999999888877777766544 567899999999999865
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=22.37 E-value=4e+02 Score=32.23 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=25.8
Q ss_pred CccEEEEcCccccCChhhHHHHHHHh----cccC-cEEEeecccCCCChHHH
Q 000566 889 GWFRVVLDEAQSIKNHRTQVARACWG----LRAK-RRWCLSGTPIQNAIDDL 935 (1416)
Q Consensus 889 ~W~rVIlDEAH~IKN~~S~~skal~~----L~ak-~RwlLTGTPIqN~l~DL 935 (1416)
+.++||+|.|++..+..... ..+.. +... ..+.+++|.-++.+...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 35789999999986544332 22222 2333 35667777644444333
No 332
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.33 E-value=1.4e+02 Score=36.97 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=53.1
Q ss_pred cCCCeEEEEcc-cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000566 1259 LGGEKAIVFSQ-WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1337 (1416)
Q Consensus 1259 ~~~~KvIVFSq-~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GLNLq~An~VI~ 1337 (1416)
.+|.++|+... |-.+..+++..|++.||.+..++.....+..+++ .. ++. .+|+
T Consensus 100 ~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~----~~-~~t--------------------k~v~ 154 (396)
T COG0626 100 KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI----KE-PNT--------------------KLVF 154 (396)
T ss_pred CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHh----cc-cCc--------------------eEEE
Confidence 35777777765 7788888999998899998888777543333222 21 233 4566
Q ss_pred EcCCCCcChHHHHHHhhhccCCCC
Q 000566 1338 LDLWWNPTTEDQAIDRAHRIGQTR 1361 (1416)
Q Consensus 1338 ~Dp~WNPa~e~QAiGRvhRIGQtr 1361 (1416)
++.|-||..+.+=|.++-|+-...
T Consensus 155 lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 155 LETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred EeCCCCcccccccHHHHHHHHHhc
Confidence 888888888777777766665444
No 333
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=22.23 E-value=47 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=27.9
Q ss_pred ccCcEEEeecccCCCChHHHHhhhhhccCCCc
Q 000566 916 RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 947 (1416)
Q Consensus 916 ~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 947 (1416)
..++..++||||+.|.+.++|++.++|.++-+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 34677899999999999999999999988754
No 334
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=22.05 E-value=1.7e+02 Score=27.77 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=31.8
Q ss_pred cEEEEeChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000566 762 GTLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 818 (1416)
Q Consensus 762 ~TLIVcP~SL-L-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~~ 818 (1416)
..|||||..+ . ..-+..++++++.. .+.+.+-+.....-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 3799999865 2 34677787777532 3333332222111111 35689999999754
No 335
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.92 E-value=1.6e+02 Score=34.97 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=52.7
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcC-----CCccEEEee
Q 000566 1259 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-----PEVSVMIMS 1319 (1416)
Q Consensus 1259 ~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-----~~v~VLL~S 1319 (1416)
.++++|||.-.-..+-.-.+..|+.-||++.|+-|+...+--+++.+.|+++ +++.|.|++
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 3789999999999999999999999999999999998888888888888743 456777766
No 336
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.43 E-value=1.8e+02 Score=26.23 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=31.2
Q ss_pred EEEEeChhhH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000566 763 TLVVCPTSVL--RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 818 (1416)
Q Consensus 763 TLIVcP~SLL--~QW~~EI~k~~~~~~~L~Vlvy~G~~r~kd~~~L~~~DVVITTY~~ 818 (1416)
+|+|||...- ..-+..+++.++...-...+-+.+.... ....++|+||||...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCcc
Confidence 6899998743 3345677777764332222222222111 456789999999753
No 337
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.30 E-value=6.7e+02 Score=31.59 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecccccccc-------CccccC
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL-------NMVAAC 1333 (1416)
Q Consensus 1261 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkaGg~GL-------NLq~An 1333 (1416)
+..+||.+.....+.-....|...|+....+.|..+..++..++..... +.+++++++........ .+....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 4578999999888777777888899999999999999989888888855 67889988876543322 334455
Q ss_pred EEEEEc
Q 000566 1334 HVLLLD 1339 (1416)
Q Consensus 1334 ~VI~~D 1339 (1416)
.||+=+
T Consensus 130 ~iViDE 135 (470)
T TIGR00614 130 LIAVDE 135 (470)
T ss_pred EEEEeC
Confidence 665533
No 338
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.25 E-value=2.7e+02 Score=36.38 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=63.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----c-----CCcEEecCCCCCHHHHHHHHHHHhcCCC--ccEEEeeccccccccC
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKD----S-----SIQYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKAASLGLN 1328 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~----~-----gI~~~rldGsms~~qR~~aI~~Fn~d~~--v~VLL~StkaGg~GLN 1328 (1416)
+..-||||---..-+...+..|.+ . .+-++-++.+.+.+...++ |...|. -+|+| .|..+...|.
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVL-ATNIAETSlT 547 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVL-ATNIAETSLT 547 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEE-eecchhhcee
Confidence 456788887655555555555543 2 3557889999998877766 665443 45555 5577777666
Q ss_pred ccccCEEEEEcCC------CCcC--------------hHHHHHHhhhccCCCCcEEEEEEEeC
Q 000566 1329 MVAACHVLLLDLW------WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVK 1371 (1416)
Q Consensus 1329 Lq~An~VI~~Dp~------WNPa--------------~e~QAiGRvhRIGQtr~V~VyrLi~k 1371 (1416)
+....+| +||- +||. .-.||.||++|.| |-.-|||++.
T Consensus 548 IdgI~yV--iDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~ 605 (902)
T KOG0923|consen 548 IDGIKYV--IDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA 605 (902)
T ss_pred ecCeEEE--ecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech
Confidence 6555444 5654 4543 3346666665555 5566777774
No 339
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=31 Score=39.86 Aligned_cols=27 Identities=44% Similarity=1.118 Sum_probs=22.9
Q ss_pred cccccCCCCCCcchhcccCccc-chhhh
Q 000566 1097 AICGICNDPPEDAVVSICGHVF-CNQCI 1123 (1416)
Q Consensus 1097 ~~C~iC~d~~~~~vit~CgHif-C~~Ci 1123 (1416)
..|.||.|.|.+=++..|||.. |.+|=
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CG 328 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCG 328 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhc
Confidence 4699999999999999999964 66664
No 340
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=21.02 E-value=5.1e+02 Score=31.31 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHc
Q 000566 649 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 695 (1416)
Q Consensus 649 ~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~ 695 (1416)
.+||||...-..+.+.-.....+.+=+++-..|+||+..|.++....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 46888888777766654433233455688999999999999887654
No 341
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=20.98 E-value=3.7e+02 Score=37.27 Aligned_cols=43 Identities=26% Similarity=0.208 Sum_probs=29.9
Q ss_pred ccEEEEcCccccCChhhHHHHHHHhc-ccCcEEEeecccCCCChHH
Q 000566 890 WFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDD 934 (1416)
Q Consensus 890 W~rVIlDEAH~IKN~~S~~skal~~L-~ak~RwlLTGTPIqN~l~D 934 (1416)
-++||||||-++... ...+.+... ....+++|.|=|-|-..-+
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIE 477 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCC
Confidence 367999999999644 334444433 5678999999887765433
No 342
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=20.90 E-value=3.9e+02 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=17.2
Q ss_pred CCcEEEecCCCchHHHHHHHHH
Q 000566 672 SGGILADDQGLGKTISTIALIL 693 (1416)
Q Consensus 672 ~GGILADEMGLGKTl~aIALI~ 693 (1416)
..-+|--..|+|||..+-|+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3467889999999988766653
No 343
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.87 E-value=3.6e+02 Score=35.80 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1319 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1319 (1416)
.|+.+||...-......+...|+.. | ..++.++++++..+|.+.-.+... ++.+|+|.+
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~IViGt 247 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARVVVGT 247 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcEEEEc
Confidence 5778999988888888888888764 4 679999999999999998888776 778888754
No 344
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=20.16 E-value=40 Score=40.65 Aligned_cols=32 Identities=22% Similarity=0.644 Sum_probs=28.6
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhcc
Q 000566 1098 ICGICNDPPEDAVVSICGHVFCNQCICERLTA 1129 (1416)
Q Consensus 1098 ~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~ 1129 (1416)
.|++|..--++|++.+|+|.+|..|-...+..
T Consensus 6 kc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 6 KCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 49999999999999999999999999877654
No 345
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.03 E-value=1.3e+02 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCC
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1296 (1416)
Q Consensus 1260 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms 1296 (1416)
++.++|+||..-.........|+..|+.+..++|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4678999988755677778889999998889999974
Done!