Query 000566
Match_columns 1416
No_of_seqs 284 out of 2228
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:48:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000566.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_337-341//hhsearch_pdb/000566hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 719.4 22.6 608 503-1415 96-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 686.3 32.2 495 645-1416 51-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 634.4 36.2 464 642-1416 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 455.9 30.0 425 646-1390 150-633 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 376.0 30.9 465 647-1390 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 352.4 22.7 255 978-1416 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 341.6 18.7 378 647-1389 91-471 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 324.0 30.7 129 1260-1394 630-770 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 315.5 27.7 129 1260-1394 630-770 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 309.0 25.0 129 1260-1394 389-529 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=719.44 Aligned_cols=608 Identities=24% Similarity=0.363 Sum_probs=444.2
Q ss_pred CCCCHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC------CCCCHHHHHHCCCCC
Q ss_conf 2343021001000121111223---5779432145887776577999983898015896------565223642100135
Q 000566 503 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQP------ARSNQSLVLGKTLSM 573 (1416)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~ 573 (1416)
.+++.++..++.++.+..+.+. +-.++|+++...++.+...+.-+++..+|+|=.. .......++.||-++
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 34157999999998632778875189998788888756665420001113534689864113467898865999981578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 64436656423699841223677889999999877678899887517999999986105899977789998655677467
Q 000566 574 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 653 (1416)
Q Consensus 574 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~l~~p~~e~~~P~g~l~~~L~ph 653 (1416)
+|..|.|............+...|.........+.........+. .+ ... ..+|+.....+|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------~~--~~~-~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP------------RF--EKL-SVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC------------CC--CCC-SSCCTTCCSSCCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC------------CC--CCC-CCCCCCCCCCCCCHH
T ss_conf 734264336344333319999999976313447751010345577------------64--002-569986579975899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999983105777877399906897669999999998099998876303455431045433444323564211124
Q 000566 654 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 733 (1416)
Q Consensus 654 Qk~al~wMl~rE~~~~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~ 733 (1416)
|+.|+.||+..... .+||||||+||||||+++|+++......
T Consensus 241 Q~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~----------------------------------- 282 (800)
T 3mwy_W 241 QLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA----------------------------------- 282 (800)
T ss_dssp HHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 99999999998513---8998998278753299999999999986-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----------
Q ss_conf 5434345899987530024220289998289996703299999999988148999389999489878881----------
Q 000566 734 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---------- 803 (1416)
Q Consensus 734 ~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~---------- 803 (1416)
....+++|||||.+++.||++|+.+|++ .+.+++|+|..+.+..
T Consensus 283 -----------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 283 -----------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp -----------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred -----------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf -----------------------0779988999880389999999999779---96499982777778898887762263
Q ss_pred ----CCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----0015898999710123013799999981358987531179999753367666889999864466678999974200
Q 000566 804 ----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 879 (1416)
Q Consensus 804 ----~~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~~~~~~~~ 879 (1416)
.....+|||||||+++..+.
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------------------
T ss_conf 001344566788990699998649--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 01476445470099995763347734399999982003807996254688996778865421057884215889866336
Q 000566 880 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 959 (1416)
Q Consensus 880 ~~~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~ 959 (1416)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-
T ss_conf ---9983377325641344441471019999999752243897227857799999999999858663674344232223-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 78889523289999999675531011211489886579983799998049999999999999998999999997084301
Q 000566 960 PISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1039 (1416)
Q Consensus 960 pi~k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~ 1039 (1416)
..........|+.+++++|+||+|.++.. .||++.+.++.++|++.|+++|..+.......+.... ..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-----~~ 504 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-----KG 504 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_conf --14689999999999757775320876643-----1688279999707999999999999999999986103-----54
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 29999999999999715810002457404566479998416089999999986530011366799987311013584111
Q 000566 1040 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1119 (1416)
Q Consensus 1040 ~~~~IL~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC 1119 (1416)
...+++..+++||++|+||.|+...... .......
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~--------~~~~~~~------------------------------------- 539 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEER--------VLQKFGD------------------------------------- 539 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHH--------HCCCC---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCHHHH--------HHHHCCC-------------------------------------
T ss_conf 5446999999999873586542355789--------9886156-------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23464320138998888532233432201234210233236899998888888742235886778544537899999999
Q 000566 1120 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1199 (1416)
Q Consensus 1120 ~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL 1199 (1416)
........ .......++|+..+.++|
T Consensus 540 ---------------------~~~~~~~~---------------------------------~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 ---------------------GKMTRENV---------------------------------LRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -----------------------CCSHHH---------------------------------HHHHHHTCHHHHHHHHHH
T ss_pred ---------------------CCCCHHHH---------------------------------HHHHHHCCHHHHHHHHHH
T ss_conf ---------------------65557788---------------------------------887664276999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96027889865554322344788668999999889986434203568998420220101599729999165878999999
Q 000566 1200 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1279 (1416)
Q Consensus 1200 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~ 1279 (1416)
..+. ..++|+||||||+.++++|+.
T Consensus 566 ~~~~-------------------------------------------------------~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 566 TRLK-------------------------------------------------------KDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp HHHT-------------------------------------------------------TTTCCEEEEESCHHHHHHHHH
T ss_pred HHHH-------------------------------------------------------HCCCEEEEEECHHHHHHHHHH
T ss_conf 9975-------------------------------------------------------279818999635999999999
Q ss_pred HHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99816992882389979999999999970599-95399961442123468555698999838999590989989320139
Q 000566 1280 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1358 (1416)
Q Consensus 1280 ~L~~~gI~~~rldGsms~~eR~~aI~~Fn~d~-ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiG 1358 (1416)
+|...|+++.+++|+|+..+|++++++|+..+ ...|+|+|+++||+||||+.|++||+||++|||..+.||+||+||+|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99867997899969999999999999960899982599974544567877601636899468788116899999988558
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 989599999984999999999999999999998818986676----344689999997431
Q 000566 1359 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG----QQTRLTVDDLNYLFM 1415 (1416)
Q Consensus 1359 Qtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg~d~~~~----~~~~lt~~DL~~LF~ 1415 (1416)
|+++|+||||++++|+|++|++++.+|..+..++++.....+ ....++.+||..|+.
T Consensus 671 Q~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 671 QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9863799998619989999999999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=686.27 Aligned_cols=495 Identities=26% Similarity=0.383 Sum_probs=389.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 655677467999999999831057--778773999068976699999999980999988763034554310454334443
Q 000566 645 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 722 (1416)
Q Consensus 645 ~l~~~L~phQk~al~wMl~rE~~~--~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 722 (1416)
.+...|+|||++|+.||+....+. ...+||||||+||||||+++|+++........
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~---------------------- 108 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP---------------------- 108 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC----------------------
T ss_conf 6400351999999999998423354458887596107874299999999999997486----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 23564211124543434589998753002422028999828999670329999999998814899938999948987888
Q 000566 723 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 802 (1416)
Q Consensus 723 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~ 802 (1416)
......+++|||||.+++.||++|+.+|++. .+.++.++|..+...
T Consensus 109 --------------------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 109 --------------------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp --------------------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred --------------------------------CCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHH
T ss_conf --------------------------------6567778579996589988799999997588--725999808988999
Q ss_pred CC----------CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10----------01589899971012301379999998135898753117999975336766688999986446667899
Q 000566 803 PC----------ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 872 (1416)
Q Consensus 803 ~~----------~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~ 872 (1416)
.. ....++|+||||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------------------------------------------------
T ss_conf 9999999873377778757996389987657-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99742000147644547009999576334773439999998200380799625468899677886542105788421588
Q 000566 873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 952 (1416)
Q Consensus 873 ~~~~~~~~~~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~ 952 (1416)
..|....|++||+||||+|||..++.++++..+++.+||+|||||+||++.|||++++||.|++|+....
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----------8750488657998786224780459999998555673799846734588999999998618876899999
Q ss_pred HHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 9866336788895------------2328999999967553101121148988657998379999804999999999999
Q 000566 953 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1020 (1416)
Q Consensus 953 F~~~i~~pi~k~~------------~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L 1020 (1416)
|..+|..|+.++. ......|+.++.++|+||+|.++.. .||++.+.++.|+|+++|+++|+.+
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 99863261541677677888999999999999999889998710876764-----2798369999837998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99989999999970843012999999999999971581000245740456647999841608999999998653001136
Q 000566 1021 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICG 1100 (1416)
Q Consensus 1021 ~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~ 1100 (1416)
....... ...........++..+++||++|+||.++.... ... .
T Consensus 331 ~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~--------------------------~~~-~---- 374 (644)
T 1z3i_X 331 LKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKC--------------------------LTG-E---- 374 (644)
T ss_dssp HHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH--------------------------HHT-C----
T ss_pred HHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH--------------------------HCC-C----
T ss_conf 9989999-----987627621459999999999957999888887--------------------------415-4----
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67999873110135841112346432013899888853223343220123421023323689999888888874223588
Q 000566 1101 ICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAP 1180 (1416)
Q Consensus 1101 iC~~~~e~~vlt~CgHifC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~ 1180 (1416)
+.. + .++ ... +..+..
T Consensus 375 ---~~~-~------------~~~--------~~~---------------------------------~~~~~~------- 390 (644)
T 1z3i_X 375 ---EGF-D------------GAL--------DLF---------------------------------PQNYST------- 390 (644)
T ss_dssp ---TTC-T------------TGG--------GTS---------------------------------CSSCCS-------
T ss_pred ---CHH-H------------HHH--------HHC---------------------------------CCCCCC-------
T ss_conf ---003-5------------577--------645---------------------------------421110-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 67785445378999999999602788986555432234478866899999988998643420356899842022010159
Q 000566 1181 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1260 (1416)
Q Consensus 1181 ~~~~~~~~ssKikallelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~ 1260 (1416)
.......+.|+..+..++..+.. ..
T Consensus 391 -~~~~~~~s~K~~~l~~ll~~~~~------------------------------------------------------~~ 415 (644)
T 1z3i_X 391 -KAVEPQLSGKMLVLDYILAMTRT------------------------------------------------------TT 415 (644)
T ss_dssp -SSCCGGGSHHHHHHHHHHHHHHH------------------------------------------------------HC
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHH------------------------------------------------------CC
T ss_conf -00570117489999999999864------------------------------------------------------69
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 9729999165878999999998169928823899799999999999705999-539996144212346855569899983
Q 000566 1261 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLD 1339 (1416)
Q Consensus 1261 ~eKvIIFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~eR~~aI~~Fn~d~e-v~VLLlSlkAGg~GLNLt~An~VI~lD 1339 (1416)
++|+||||+|+.++++|+..|...|+.+.+++|+|+.++|++++++|++++. ..|+|+|+++||+||||+.|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 98799998059999999999997799789983999999999999996399999679998445566784652389899979
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 89995909899893201399895999999849999999999999999999988189866763446899999974319
Q 000566 1340 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus 1340 p~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~~ 1416 (1416)
+||||+.+.||+||+||+||+++|+||+|++++|+||+|+++|..|+.++..+++++. .....++.+||+.||.+
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ--DVERHFSLGELRELFSL 570 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS--SCCCSSCHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHCCCCHHHHHHHHCC
T ss_conf 9998137999988403228987269999887988999999999999999999856860--54337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=634.40 Aligned_cols=464 Identities=33% Similarity=0.510 Sum_probs=397.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99865567746799999999983105777877399906897669999999998099998876303455431045433444
Q 000566 642 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 721 (1416)
Q Consensus 642 P~g~l~~~L~phQk~al~wMl~rE~~~~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~ 721 (1416)
|.+ ++..|+|||++|+.||......+ +||||||+||+|||+++|+++.....
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~~------------------------ 82 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAKK------------------------ 82 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHHH------------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 833-20033699999999999974179---98899808997389999999998875------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 32356421112454343458999875300242202899982899967032999999999881489993899994898788
Q 000566 722 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 801 (1416)
Q Consensus 722 ~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k 801 (1416)
..+.+++|||||.+++.||.+|+.+|.+ .+++.+++|....
T Consensus 83 -----------------------------------~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~- 123 (500)
T 1z63_A 83 -----------------------------------ENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK- 123 (500)
T ss_dssp -----------------------------------TTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS-
T ss_pred -----------------------------------CCCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH-
T ss_conf -----------------------------------5899978999038999999999999779---9559997267021-
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81001589899971012301379999998135898753117999975336766688999986446667899997420001
Q 000566 802 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 881 (1416)
Q Consensus 802 ~~~~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~~~~~~~~~~ 881 (1416)
..+..+||||+||+++..+.
T Consensus 124 --~~~~~~~ivi~t~~~l~~~~---------------------------------------------------------- 143 (500)
T 1z63_A 124 --IKLEDYDIILTTYAVLLRDT---------------------------------------------------------- 143 (500)
T ss_dssp --CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------
T ss_pred --CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------
T ss_conf --00357768996379972630----------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 47644547009999576334773439999998200380799625468899677886542105788421588986633678
Q 000566 882 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 961 (1416)
Q Consensus 882 ~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 961 (1416)
.+....|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.+++|..+..|...|..|+
T Consensus 144 --~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~ 221 (500)
T 1z63_A 144 --RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPI 221 (500)
T ss_dssp --HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHH
T ss_pred --HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf --211787287998084101787689999999600471899746777799999999999858775799899999852511
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 88952328999999967553101121148988657998379999804999999999999999899999999708430129
Q 000566 962 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 1041 (1416)
Q Consensus 962 ~k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~ 1041 (1416)
..+.......|+.++.++++||+|.+.. ....||++.+..+.+++++.|+.+|+.+.......+ .........
T Consensus 222 ~~~~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~ 294 (500)
T 1z63_A 222 KKGDNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRK 294 (500)
T ss_dssp HTTCHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCCCH
T ss_conf 1466889999999976674550255424---112299975899981899999999999999999999----864232106
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 99999999999971581000245740456647999841608999999998653001136679998731101358411123
Q 000566 1042 VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1121 (1416)
Q Consensus 1042 ~~IL~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC~~ 1121 (1416)
..++..++++|++|+||.++....
T Consensus 295 ~~~~~~l~~lr~~~~~p~l~~~~~-------------------------------------------------------- 318 (500)
T 1z63_A 295 GMILSTLLKLKQIVDHPALLKGGE-------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCSC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCC--------------------------------------------------------
T ss_conf 799999999998817998843852--------------------------------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 46432013899888853223343220123421023323689999888888874223588677854453789999999996
Q 000566 1122 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQS 1201 (1416)
Q Consensus 1122 Ci~e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL~~ 1201 (1416)
.....++|+..+.+++..
T Consensus 319 --------------------------------------------------------------~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 319 --------------------------------------------------------------QSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp --------------------------------------------------------------CCSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CHHHCCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------------011115529999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 02788986555432234478866899999988998643420356899842022010159972999916587899999999
Q 000566 1202 LAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL 1281 (1416)
Q Consensus 1202 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~~L 1281 (1416)
+.. .++|+|||++|+.+++.|+..|
T Consensus 337 ~~~-------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l 361 (500)
T 1z63_A 337 ALD-------------------------------------------------------EGDKIAIFTQFVDMGKIIRNII 361 (500)
T ss_dssp HHT-------------------------------------------------------TTCCEEEECSCHHHHHHHHHHH
T ss_pred HHC-------------------------------------------------------CCCCEEEEEEHHHHHHHHHHHH
T ss_conf 872-------------------------------------------------------6886899972188999999999
Q ss_pred HHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 816-9928823899799999999999705999539996144212346855569899983899959098998932013998
Q 000566 1282 KDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1360 (1416)
Q Consensus 1282 ~~~-gI~~~rldGsms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiGQt 1360 (1416)
... ++.+.+++|+++.++|++++++|+++++++|+|++++++++||||+.|++||++|++|||..+.||+||+||+||+
T Consensus 362 ~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 362 EKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441 (500)
T ss_dssp HHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTT
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 88538876999799999999999999608999877999533355777445588899958998954589999988873898
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 95999999849999999999999999999988189866763446899999974319
Q 000566 1361 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus 1361 r~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~~ 1416 (1416)
++|+||+|++++|+||+|+++++.|+.++..+++++. .....++.+||+.||..
T Consensus 442 ~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 442 RNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp SCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTT--GGGGSSCHHHHHHHHSC
T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHCCCCHHHHHHHHCC
T ss_conf 7069999774898999999999999999999860685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=455.93 Aligned_cols=425 Identities=18% Similarity=0.258 Sum_probs=315.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55677467999999999831057778773999068976699999999980999988763034554310454334443235
Q 000566 646 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 725 (1416)
Q Consensus 646 l~~~L~phQk~al~wMl~rE~~~~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 725 (1416)
....|+|||+.++.||+.+. ..|+||||+||+|||+++++++.....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~---------------------------- 196 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLL---------------------------- 196 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHH----------------------------
T ss_conf 89997099999999999705-----898898789997599999999999998----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----C
Q ss_conf 642111245434345899987530024220289998289996703299999999988148999389999489878----8
Q 000566 726 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 801 (1416)
Q Consensus 726 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~----k 801 (1416)
..+.+++|||||.+|+.||..|+.+++. +.+.+++|.... .
T Consensus 197 -------------------------------~g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 197 -------------------------------SGAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHD 241 (968)
T ss_dssp -------------------------------TSSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHT
T ss_pred -------------------------------HCCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHH
T ss_conf -------------------------------1899829999578889999999999869----98799806205554320
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81001589899971012301379999998135898753117999975336766688999986446667899997420001
Q 000566 802 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 881 (1416)
Q Consensus 802 ~~~~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~~~~~~~~~~ 881 (1416)
....+..++|||+||+++......
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHHHHCHHH--------------------------------------------------------
T ss_conf 036445689899768998648788--------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHH---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 47644547009999576334773439---99999820--03807996254688996778865421057884215889866
Q 000566 882 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 956 (1416)
Q Consensus 882 ~~~L~~i~W~RVILDEAH~IKN~~T~---~skAi~~L--~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~ 956 (1416)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++||.+..|..+..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88764158778974446762588875429999999986257858999768766987999999982593011898999999
Q ss_pred HCCCC----------CC---------------------------------CCHHHHHHHHHHH-----HHHHHHHCCCCC
Q ss_conf 33678----------88---------------------------------9523289999999-----675531011211
Q 000566 957 IKVPI----------SK---------------------------------NPVKGYKKLQAVL-----KTIMLRRTKGTL 988 (1416)
Q Consensus 957 i~~pi----------~k---------------------------------~~~~~~~~L~~lL-----~~imLRRtK~dv 988 (1416)
+.... .. ........+..++ ..+++|+++..+
T Consensus 346 ~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 346 QKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98578899999987426789988999999884203367887503622233379999999999986173326563226554
Q ss_pred CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 48988657998379999804999999999999999899999999708430129999999999999715810002457404
Q 000566 989 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1068 (1416)
Q Consensus 989 ~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRqac~HP~Lv~~~~~~s 1068 (1416)
. .+|++....+.+++++.++..|...... ......... ...+.+|..
T Consensus 426 ~------~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~l~pe~-------- 472 (968)
T 3dmq_A 426 K------GFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAEDR----------ARDMLYPER-------- 472 (968)
T ss_dssp C------CCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGGG----------THHHHCSGG--------
T ss_pred C------CCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHHH----------HHHHCCHHH--------
T ss_conf 5------5671115752368999999999987543---------021266777----------764108598--------
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 56647999841608999999998653001136679998731101358411123464320138998888532233432201
Q 000566 1069 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1148 (1416)
Q Consensus 1069 ~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v 1148 (1416)
+
T Consensus 473 -------------------------------------------------------------------------------~ 473 (968)
T 3dmq_A 473 -------------------------------------------------------------------------------I 473 (968)
T ss_dssp -------------------------------------------------------------------------------G
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------9
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23421023323689999888888874223588677854453789999999996027889865554322344788668999
Q 000566 1149 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1228 (1416)
Q Consensus 1149 ~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 1228 (1416)
+. .+. + ........+.|+.++.+++...
T Consensus 474 ~~------~l~-------------~-------~~~~~~~~~~K~~~L~~ll~~~-------------------------- 501 (968)
T 3dmq_A 474 YQ------EFE-------------G-------DNATWWNFDPRVEWLMGYLTSH-------------------------- 501 (968)
T ss_dssp TT------TTT-------------S-------SSCCTTTTSHHHHHHHHHHHHT--------------------------
T ss_pred HH------HHH-------------H-------HHHCCCCCCHHHHHHHHHHHHC--------------------------
T ss_conf 98------764-------------3-------3313568567999999999837--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9998899864342035689984202201015997299991658789999999981-699288238997999999999997
Q 000566 1229 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDF 1307 (1416)
Q Consensus 1229 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~~L~~-~gI~~~rldGsms~~eR~~aI~~F 1307 (1416)
.+.|+|||+++..+++.|+..|.. .|+++..++|+|+..+|++++++|
T Consensus 502 -------------------------------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 502 -------------------------------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp -------------------------------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf -------------------------------9997899969599999999999987498389984999999999999997
Q ss_pred HCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0599-953999614421234685556989998389995909899893201399895999999849999999999999999
Q 000566 1308 NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1386 (1416)
Q Consensus 1308 n~d~-ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~ 1386 (1416)
++.. .+.||| ++.++++|+|++.+++||++|++|||..+.|++||++|+||++.|+||+++.++|+|++|++.+.+|.
T Consensus 551 ~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 551 AEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp HSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred HCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 47997630898-53343168885567679995699987899987011430799850899980577719999999998678
Q ss_pred HHHH
Q ss_conf 9999
Q 000566 1387 EMVA 1390 (1416)
Q Consensus 1387 ~l~~ 1390 (1416)
.+..
T Consensus 630 ~~~~ 633 (968)
T 3dmq_A 630 DAFE 633 (968)
T ss_dssp CCSS
T ss_pred CCEE
T ss_conf 7635
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=376.02 Aligned_cols=465 Identities=16% Similarity=0.178 Sum_probs=284.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 56774679999999998310577787739990689766999999999809999887630345543104543344432356
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 726 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~rE~~~~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 726 (1416)
..+|+|||++++.|+++. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-C
Q ss_conf 4211124543434589998753002422028999828999670-3299999999988148999389999489878881-0
Q 000566 727 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-C 804 (1416)
Q Consensus 727 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~-~ 804 (1416)
.+.+.+|||||. +|+.||.+|+.+++.. ....+..++|....... .
T Consensus 50 -------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp -------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHH
T ss_pred -------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHEEEEECCCCHHHHHH
T ss_conf -------------------------------47985999978889999999999987475-6111687607753355665
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01589899971012301379999998135898753117999975336766688999986446667899997420001476
Q 000566 805 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 884 (1416)
Q Consensus 805 ~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~~~~~~~~~~~~~ 884 (1416)
.+..++|+|+||+.+...+.. ..
T Consensus 98 ~~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~ 120 (494)
T 1wp9_A 98 AWARAKVIVATPQTIENDLLA---------------------------------------------------------GR 120 (494)
T ss_dssp HHHHCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred HCCCCCEEEECHHHHHHHHHC---------------------------------------------------------CC
T ss_conf 335798999639999999860---------------------------------------------------------87
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHH--HHHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 445470099995763347734399--9999-8200380799625468899677886542105788421588986633678
Q 000566 885 LAKVGWFRVVLDEAQSIKNHRTQV--ARAC-WGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 961 (1416)
Q Consensus 885 L~~i~W~RVILDEAH~IKN~~T~~--skAi-~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 961 (1416)
+....|.+||+||||.+++..... .+.+ ......++|+|||||. |+..+++.++.++..........+...+...+
T Consensus 121 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 199 (494)
T 1wp9_A 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199 (494)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGC
T ss_pred CCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHC
T ss_conf 15654108999787566888819999999973288776999956998-88578999998507000502678758788752
Q ss_pred C--------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--------89523289999999675531011211489886579983799998049999999999999998999999997
Q 000566 962 S--------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 1033 (1416)
Q Consensus 962 ~--------k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~ 1033 (1416)
. .........+...+..++.+|.+.....+ .+++.. ..++..+.. .+. ..+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~---~~~----~~~~~~~~ 263 (494)
T 1wp9_A 200 KGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVL---RAG----QIINEEMA 263 (494)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHH---HHH----HHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHH---HHH----HHHHHHHH
T ss_conf 78742689568858899999989899999999999735----565457-----773355789---999----99998753
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 08-43012999999999999971581000245740456647999841608999999998653001136679998731101
Q 000566 1034 AG-TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVS 1112 (1416)
Q Consensus 1034 ~g-~~~~~~~~IL~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt 1112 (1416)
.+ .........+..++.++.+..... ..........+..+... |........-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~------~~~~~~~~~~- 317 (494)
T 1wp9_A 264 KGNHDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE------AKAGSTKASK- 317 (494)
T ss_dssp TTCCSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH------HHTTCCHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH------HCCCCCHHHH-
T ss_conf 356311347999988888999999998-------------------52579999999999875------2232114556-
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 35841112346432013899888853223343220123421023323689999888888874223588677854453789
Q 000566 1113 ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKI 1192 (1416)
Q Consensus 1113 ~CgHifC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKi 1192 (1416)
.+++..-+.. ... .+... ......++|+
T Consensus 318 ---~~~~~~~~~~----------------------~~~--~~~~~-------------------------~~~~~~~~k~ 345 (494)
T 1wp9_A 318 ---EIFSDKRMKK----------------------AIS--LLVQA-------------------------KEIGLDHPKM 345 (494)
T ss_dssp ---HHHTSHHHHH----------------------HHH--HHHHH-------------------------HHHTCSCHHH
T ss_pred ---HHHHHHHHHH----------------------HHH--HHHHH-------------------------HHCCCCCHHH
T ss_conf ---6665078898----------------------999--99988-------------------------7458998699
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHH
Q ss_conf 99999999602788986555432234478866899999988998643420356899842022010159972999916587
Q 000566 1193 KAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTK 1272 (1416)
Q Consensus 1193 kallelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~ 1272 (1416)
..+.+++..+.. ...+.|+|||+++..
T Consensus 346 ~~l~~~l~~~~~-----------------------------------------------------~~~~~k~lVF~~~~~ 372 (494)
T 1wp9_A 346 DKLKEIIREQLQ-----------------------------------------------------RKQNSKIIVFTNYRE 372 (494)
T ss_dssp HHHHHHHHHHHH-----------------------------------------------------HCTTCCEEEECSCHH
T ss_pred HHHHHHHHHHHC-----------------------------------------------------CCCCCEEEEEECCHH
T ss_conf 999999999843-----------------------------------------------------689975999976689
Q ss_pred HHHHHHHHHHHCCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 899999999816992882389--------979999999999970599953999614421234685556989998389995
Q 000566 1273 MLDLLEASLKDSSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1344 (1416)
Q Consensus 1273 ~LdlLe~~L~~~gI~~~rldG--------sms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNP 1344 (1416)
+++.|+..|...|+.+.+++| +|+..+|++++++|++ +.+.||| ++.++++|+||+.+++||++|++|||
T Consensus 373 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 373 TAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCH
T ss_conf 999999999975998079965665444445899999999999866-9946999-88841258871437989992898878
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 9098998932013998959999998499999999999999999999
Q 000566 1345 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1390 (1416)
Q Consensus 1345 a~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~ 1390 (1416)
....|++||++|.|| +.+|+|++++|+||+++.++.+|.+++.
T Consensus 451 ~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 451 IRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999998752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=352.36 Aligned_cols=255 Identities=29% Similarity=0.434 Sum_probs=220.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 75531011211489886579983799998049999999999999998999999997084301299999999999997158
Q 000566 978 TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1057 (1416)
Q Consensus 978 ~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRqac~H 1057 (1416)
.--+||+|+++.. +|||+.+.+++|+|+++|+++|+.+.......+ ..........+++..+++|||+|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----199977999981899999999999999999999----7403521288999999999998489
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 10002457404566479998416089999999986530011366799987311013584111234643201389988885
Q 000566 1058 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTR 1137 (1416)
Q Consensus 1058 P~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC~~Ci~e~l~~~~~~CP~~ 1137 (1416)
|.|+....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 32233432201234210233236899998888888742235886778544537899999999960278898655543223
Q 000566 1138 NCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRH 1217 (1416)
Q Consensus 1138 ~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL~~l~~~~~~~~~~~~l~~ 1217 (1416)
.....++|+.++.++|..+..
T Consensus 90 ----------------------------------------------~~~~~s~K~~~L~~ll~~~~~------------- 110 (271)
T 1z5z_A 90 ----------------------------------------------QSVRRSGKMIRTMEIIEEALD------------- 110 (271)
T ss_dssp ----------------------------------------------CCSTTCHHHHHHHHHHHHHHH-------------
T ss_pred ----------------------------------------------CCCCCCHHHHHHHHHHHHHHH-------------
T ss_conf ----------------------------------------------223468999999999999986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf 4478866899999988998643420356899842022010159972999916587899999999816-992882389979
Q 000566 1218 SFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMS 1296 (1416)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~~L~~~-gI~~~rldGsms 1296 (1416)
.++|+||||+|+.++++|+..|... |+.+.+++|+++
T Consensus 111 ------------------------------------------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 111 ------------------------------------------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp ------------------------------------------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred ------------------------------------------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf ------------------------------------------79969999551999999999998733984799979999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 99999999997059995399961442123468555698999838999590989989320139989599999984999999
Q 000566 1297 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1376 (1416)
Q Consensus 1297 ~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEE 1376 (1416)
..+|++++++|+++++++|+|+|+++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||
T Consensus 149 ~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 149 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 99999999983289999789972235158867644899999799998518999998523238998569999854988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9999999999999988189866763446899999974319
Q 000566 1377 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus 1377 rIl~lq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~~ 1416 (1416)
+|++++..|+.+++.+++.+. .....++.+||+.||..
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCC--HHHHCCCHHHHHHHHCC
T ss_conf 999999999999999971670--54323899999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=341.57 Aligned_cols=378 Identities=17% Similarity=0.166 Sum_probs=267.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 56774679999999998310577787739990689766999999999809999887630345543104543344432356
Q 000566 647 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 726 (1416)
Q Consensus 647 ~~~L~phQk~al~wMl~rE~~~~~~rGGILADEMGLGKTIqaLALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 726 (1416)
..+|+|||.+++.++++. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCC
Q ss_conf 4211124543434589998753002422028999828999670-329999999998814899938-99994898788810
Q 000566 727 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDPC 804 (1416)
Q Consensus 727 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~-VlvyhG~~r~k~~~ 804 (1416)
.+.+|||||. +|+.||.+++.+ + .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGG-G----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHH-C----CCCCEEEECCCCCC----
T ss_conf ---------------------------------99999998799999999999996-7----99636998787677----
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01589899971012301379999998135898753117999975336766688999986446667899997420001476
Q 000566 805 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 884 (1416)
Q Consensus 805 ~l~~yDVVITTY~~l~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~krk~~~~~~r~~~~~kk~~~~~~~~~~~~~ 884 (1416)
..+|+|+||+.+...+.
T Consensus 171 ---~~~Ivv~T~~~l~~~~~------------------------------------------------------------ 187 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE------------------------------------------------------------ 187 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH------------------------------------------------------------
T ss_pred ---CCCEEEEECHHHHHHHH------------------------------------------------------------
T ss_conf ---67789997689997799------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 44547009999576334773439999998200380799625468899677886542105788421588986633678889
Q 000566 885 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 964 (1416)
Q Consensus 885 L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi~k~ 964 (1416)
...-.|..||+||+|.+.+.... +.+..+.+.++++|||||.++.-.+
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------------------------ 235 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------------------------ 235 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG------------------------------
T ss_pred HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH------------------------------
T ss_conf 73687778999897578976899--9997357781899932766889778------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 52328999999967553101121148988657998379999804999999999999999899999999708430129999
Q 000566 965 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1044 (1416)
Q Consensus 965 ~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~I 1044 (1416)
..+..++.+++.++...++..+ .+++.....+.+++++.++..|..+...... +......
T Consensus 236 -----~~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~------- 295 (472)
T 2fwr_A 236 -----EILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARGI------- 295 (472)
T ss_dssp -----GSHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCCC-------
T ss_pred -----HHHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCCC-------
T ss_conf -----9999972985765478987067----6788189999858998999999999999999----9986475-------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 99999999971581000245740456647999841608999999998653001136679998731101358411123464
Q 000566 1045 LLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCIC 1124 (1416)
Q Consensus 1045 L~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC~~Ci~ 1124 (1416)
....... -...+..+
T Consensus 296 ---------------~~~~~~~----------------------------------------~~~~~~~~---------- 310 (472)
T 2fwr_A 296 ---------------TLRRAED----------------------------------------FNKIVMAS---------- 310 (472)
T ss_dssp ---------------TTTCCSS----------------------------------------STTTTTTT----------
T ss_pred ---------------CCCCHHH----------------------------------------HHHHHHHH----------
T ss_conf ---------------4224466----------------------------------------89999872----------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32013899888853223343220123421023323689999888888874223588677854453789999999996027
Q 000566 1125 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAK 1204 (1416)
Q Consensus 1125 e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL~~l~~ 1204 (1416)
..++ .++..+....... .-....+.|+..+.+++...
T Consensus 311 -------~~~~--~~~~~~~~~~~~~--------------------------------~~~~~~~~k~~~l~~~l~~~-- 347 (472)
T 2fwr_A 311 -------GYDE--RAYEALRAWEEAR--------------------------------RIAFNSKNKIRKLREILERH-- 347 (472)
T ss_dssp -------CCSS--SSSTTTHHHHHHH--------------------------------HHHHSCSHHHHHHHHHHHHT--
T ss_pred -------CCCH--HHHHHHHHHHHHH--------------------------------HHHHCCHHHHHHHHHHHHHC--
T ss_conf -------3698--8999999999999--------------------------------97633738999999999857--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 88986555432234478866899999988998643420356899842022010159972999916587899999999816
Q 000566 1205 PRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1284 (1416)
Q Consensus 1205 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~~L~~~ 1284 (1416)
.+.|+|||+++..+++.|...|.
T Consensus 348 -------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l~-- 370 (472)
T 2fwr_A 348 -------------------------------------------------------RKDKIIIFTRHNELVYRISKVFL-- 370 (472)
T ss_dssp -------------------------------------------------------SSSCBCCBCSCHHHHHHHHHHTT--
T ss_pred -------------------------------------------------------CCCCEEEEECCHHHHHHHHHHHC--
T ss_conf -------------------------------------------------------89838999797999999999748--
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 9928823899799999999999705999539996144212346855569899983899959098998932013998-959
Q 000566 1285 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT-RPV 1363 (1416)
Q Consensus 1285 gI~~~rldGsms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiGQt-r~V 1363 (1416)
+..++|+++..+|++++++|++ ++++||+ ++.++++|+|++.+++||+++++||+....|++||++|.||. +.|
T Consensus 371 ---~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 371 ---IPAITHRTSREEREEILEGFRT-GRFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ---CCBCCSSSCSHHHHTHHHHHHH-SSCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ---CCEEECCCCHHHHHHHHHHHHC-CCCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf ---6556289999999999999867-9988899-8570514846202868999899998889999876315777998539
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 99999849999999999999999999
Q 000566 1364 SVLRLTVKNTVEDRILALQQKKREMV 1389 (1416)
Q Consensus 1364 ~VyrLi~kdTIEErIl~lq~kK~~l~ 1389 (1416)
.||+|+.++|+|+++.+++++|++.+
T Consensus 446 ~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 446 VLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp EEEEEEECSCC---------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99999819985379999998765058
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=324.02 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=113.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916587899999999816------------9928823899799999999999705999539996144212346
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1327 (1416)
Q Consensus 1260 ~~eKvIIFSQ~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GL 1327 (1416)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.++++||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCC
T ss_conf 9974999969799999999998637353666616996578765678889999999999863159815999-807264277
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999838999590989989320139989599999984999999999999999999998818
Q 000566 1328 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1394 (1416)
Q Consensus 1328 NLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg 1394 (1416)
|++.+++||+||++|||....|++|| ||.+++.+++|+.++|+|+++. ++..|.+++..++.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 60558989993899988999996487----7888877999986988999999-98899999999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=315.53 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=116.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916587899999999816------------9928823899799999999999705999539996144212346
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1327 (1416)
Q Consensus 1260 ~~eKvIIFSQ~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GL 1327 (1416)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|..++++|++++.++||| +|.+++.||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GI 708 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCC
T ss_conf 9970899979589999999999747564665521898447754578989999999999851369704999-748054479
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999838999590989989320139989599999984999999999999999999998818
Q 000566 1328 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1394 (1416)
Q Consensus 1328 NLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg 1394 (1416)
|++.+++||+||++|||....|++|| ||.+++.+++|+.++++|++ ..++..|..++..++.
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75108989994899988999985388----87878659999728768899-9988899999999999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=309.00 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=115.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916587899999999816------------9928823899799999999999705999539996144212346
Q 000566 1260 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1327 (1416)
Q Consensus 1260 ~~eKvIIFSQ~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~aI~~Fn~d~ev~VLLlSlkAGg~GL 1327 (1416)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.+++.||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gi 467 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 467 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCC
T ss_conf 9854999976589999999999858775500014787367765565669899999999840469658999-767043377
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999838999590989989320139989599999984999999999999999999998818
Q 000566 1328 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1394 (1416)
Q Consensus 1328 NLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg 1394 (1416)
|++.+++||+||++|||....|++|| ||.+++.++.|+.++++|++ ..++..|.+++..++.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75217889991899978899886387----87888418999827636777-7755799999999999
Done!