Query 000568
Match_columns 1416
No_of_seqs 759 out of 5401
Neff 10.2
Searched_HMMs 46136
Date Mon Apr 1 19:37:40 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-81 6.2E-86 773.8 48.8 793 26-884 18-843 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-60 3.1E-65 629.4 52.6 704 188-1268 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-41 4.3E-46 384.7 15.9 278 195-479 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 5.1E-37 1.1E-41 409.5 27.5 320 967-1353 285-606 (968)
5 PLN00113 leucine-rich repeat r 100.0 4.3E-36 9.4E-41 400.5 25.6 258 966-1302 332-590 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 2.3E-28 5E-33 256.3 -12.9 475 600-1294 63-540 (565)
7 KOG4194 Membrane glycoprotein 99.9 6.3E-26 1.4E-30 248.8 3.4 366 965-1372 77-447 (873)
8 KOG0618 Serine/threonine phosp 99.9 6.4E-27 1.4E-31 271.5 -7.1 268 966-1292 241-510 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 3.7E-27 8E-32 247.3 -13.7 485 607-1355 47-541 (565)
10 KOG4194 Membrane glycoprotein 99.9 2.4E-24 5.2E-29 236.5 -1.1 365 914-1349 79-447 (873)
11 KOG0618 Serine/threonine phosp 99.9 1.2E-24 2.7E-29 252.6 -5.8 267 989-1353 218-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 5.2E-24 1.1E-28 234.7 -3.5 387 604-1211 6-394 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 2E-24 4.3E-29 237.9 -8.1 342 965-1377 31-375 (1255)
14 PLN03210 Resistant to P. syrin 99.9 2.4E-20 5.2E-25 247.7 24.5 128 1153-1292 776-903 (1153)
15 PRK15387 E3 ubiquitin-protein 99.6 2.2E-14 4.8E-19 175.3 15.7 256 966-1352 201-456 (788)
16 KOG4237 Extracellular matrix p 99.5 4.7E-16 1E-20 164.6 -3.6 73 609-681 71-145 (498)
17 PRK15387 E3 ubiquitin-protein 99.5 2.7E-13 5.8E-18 165.9 16.8 256 990-1376 201-457 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 6.9E-13 1.5E-17 163.9 7.6 73 966-1048 199-271 (754)
19 PRK04841 transcriptional regul 99.4 5.5E-11 1.2E-15 158.8 26.5 292 190-526 14-332 (903)
20 KOG4237 Extracellular matrix p 99.3 2E-13 4.4E-18 144.9 -0.7 83 965-1048 66-149 (498)
21 KOG0617 Ras suppressor protein 99.3 7E-14 1.5E-18 130.5 -3.8 168 600-894 28-195 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 3.8E-12 8.3E-17 157.4 9.8 37 1014-1056 179-215 (754)
23 PRK00411 cdc6 cell division co 99.2 9E-10 1.9E-14 131.1 24.7 301 188-505 28-358 (394)
24 KOG0617 Ras suppressor protein 99.2 2.9E-13 6.3E-18 126.4 -4.4 161 1152-1359 30-190 (264)
25 cd00116 LRR_RI Leucine-rich re 99.2 2.2E-12 4.9E-17 149.6 -2.2 39 1203-1241 193-235 (319)
26 TIGR02928 orc1/cdc6 family rep 99.1 1.3E-08 2.8E-13 119.9 26.2 301 189-505 14-350 (365)
27 cd00116 LRR_RI Leucine-rich re 99.1 3.6E-11 7.8E-16 139.5 1.6 235 966-1265 23-291 (319)
28 TIGR03015 pepcterm_ATPase puta 99.1 1.1E-08 2.4E-13 114.9 21.4 182 217-403 43-242 (269)
29 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 145.2 6.3 235 606-888 546-788 (889)
30 PF01637 Arch_ATPase: Archaeal 99.0 1.2E-09 2.7E-14 120.2 11.2 195 192-398 1-233 (234)
31 PRK00080 ruvB Holliday junctio 99.0 7.3E-09 1.6E-13 118.8 15.1 276 190-505 25-310 (328)
32 COG2909 MalT ATP-dependent tra 98.9 4.6E-08 1E-12 116.1 20.6 280 215-528 35-340 (894)
33 PTZ00112 origin recognition co 98.9 2.5E-07 5.4E-12 110.6 23.9 214 189-404 754-987 (1164)
34 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.4E-13 105.6 10.8 144 218-366 1-163 (166)
35 TIGR00635 ruvB Holliday juncti 98.9 3.2E-08 7E-13 113.1 15.6 275 190-505 4-289 (305)
36 KOG1259 Nischarin, modulator o 98.7 5.4E-09 1.2E-13 107.3 2.3 127 1131-1264 284-411 (490)
37 KOG3207 Beta-tubulin folding c 98.6 3.9E-09 8.5E-14 114.7 -1.1 208 1132-1352 122-337 (505)
38 PRK06893 DNA replication initi 98.6 3.7E-07 8E-12 98.3 12.6 156 217-403 39-207 (229)
39 KOG3207 Beta-tubulin folding c 98.6 2.1E-08 4.5E-13 109.2 2.5 34 966-1000 121-156 (505)
40 COG3899 Predicted ATPase [Gene 98.6 2.4E-06 5.2E-11 108.9 20.4 311 192-525 2-385 (849)
41 COG3903 Predicted ATPase [Gene 98.6 2E-07 4.4E-12 102.4 9.2 293 216-528 13-316 (414)
42 KOG4341 F-box protein containi 98.5 3.5E-09 7.6E-14 114.5 -6.0 71 808-885 161-231 (483)
43 PRK15386 type III secretion pr 98.5 6.4E-07 1.4E-11 100.7 10.8 98 1148-1262 45-142 (426)
44 PRK13342 recombination factor 98.5 1.2E-06 2.7E-11 103.6 13.5 178 191-402 13-199 (413)
45 COG2256 MGS1 ATPase related to 98.4 1.9E-06 4.1E-11 94.0 13.1 155 216-396 47-209 (436)
46 PF13401 AAA_22: AAA domain; P 98.4 5.5E-07 1.2E-11 88.4 8.4 117 217-335 4-125 (131)
47 PRK15386 type III secretion pr 98.4 9.4E-07 2E-11 99.4 11.0 55 1203-1262 156-210 (426)
48 PTZ00202 tuzin; Provisional 98.4 2.1E-05 4.5E-10 87.7 21.0 166 187-366 259-434 (550)
49 TIGR03420 DnaA_homol_Hda DnaA 98.4 2E-06 4.3E-11 93.7 13.4 172 195-403 22-205 (226)
50 PRK07003 DNA polymerase III su 98.4 9.4E-06 2E-10 97.5 19.5 182 190-401 16-223 (830)
51 PRK05564 DNA polymerase III su 98.4 7.3E-06 1.6E-10 93.5 17.8 179 190-398 4-189 (313)
52 PF14580 LRR_9: Leucine-rich r 98.4 1.1E-07 2.4E-12 95.4 2.2 69 1340-1415 87-160 (175)
53 KOG4341 F-box protein containi 98.4 1E-08 2.2E-13 111.0 -5.8 180 1203-1403 268-459 (483)
54 PRK14961 DNA polymerase III su 98.4 8.6E-06 1.9E-10 94.5 17.7 182 190-398 16-219 (363)
55 PRK04195 replication factor C 98.4 3.7E-05 8E-10 93.1 23.3 247 190-478 14-271 (482)
56 COG1474 CDC6 Cdc6-related prot 98.4 1.8E-05 4E-10 90.3 19.2 209 191-401 18-240 (366)
57 PRK12323 DNA polymerase III su 98.3 9.2E-06 2E-10 96.3 16.6 197 190-399 16-225 (700)
58 PRK12402 replication factor C 98.3 7.6E-06 1.6E-10 95.4 15.8 198 190-398 15-225 (337)
59 PLN03150 hypothetical protein; 98.3 5.9E-07 1.3E-11 111.8 6.8 107 1133-1263 420-526 (623)
60 PRK14960 DNA polymerase III su 98.3 1.1E-05 2.4E-10 95.8 16.7 193 190-398 15-218 (702)
61 PRK14949 DNA polymerase III su 98.3 9.9E-06 2.2E-10 99.4 16.7 183 190-399 16-220 (944)
62 PRK14963 DNA polymerase III su 98.3 1.9E-06 4.1E-11 102.8 10.3 194 190-396 14-214 (504)
63 KOG0532 Leucine-rich repeat (L 98.3 2.9E-08 6.3E-13 111.4 -4.7 174 1134-1359 78-251 (722)
64 PF05496 RuvB_N: Holliday junc 98.3 5.8E-06 1.3E-10 84.5 12.1 182 190-404 24-226 (233)
65 PRK06645 DNA polymerase III su 98.3 2.7E-05 5.9E-10 92.5 18.0 195 190-397 21-227 (507)
66 PF13191 AAA_16: AAA ATPase do 98.3 1.2E-06 2.6E-11 92.1 6.1 51 191-244 1-51 (185)
67 KOG1259 Nischarin, modulator o 98.3 2.2E-07 4.8E-12 95.7 0.4 218 1130-1375 181-410 (490)
68 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.6E-10 93.9 16.9 186 190-402 16-224 (546)
69 PLN03025 replication factor C 98.2 1.6E-05 3.5E-10 90.8 15.4 182 190-396 13-197 (319)
70 cd00009 AAA The AAA+ (ATPases 98.2 6.8E-06 1.5E-10 82.9 11.0 125 193-337 1-131 (151)
71 PF13173 AAA_14: AAA domain 98.2 4E-06 8.7E-11 81.3 8.5 119 218-358 3-127 (128)
72 PRK08727 hypothetical protein; 98.2 2.1E-05 4.6E-10 84.9 14.7 148 218-396 42-201 (233)
73 PLN03150 hypothetical protein; 98.2 1.7E-06 3.7E-11 107.7 6.9 101 1112-1214 425-526 (623)
74 PRK00440 rfc replication facto 98.2 2.6E-05 5.7E-10 90.1 16.2 181 190-397 17-201 (319)
75 PRK08691 DNA polymerase III su 98.2 2.7E-05 5.8E-10 93.8 15.8 180 190-399 16-220 (709)
76 PRK14956 DNA polymerase III su 98.2 2.3E-05 5E-10 90.8 14.8 192 190-397 18-220 (484)
77 TIGR02903 spore_lon_C ATP-depe 98.2 2.7E-05 5.9E-10 96.0 16.4 203 190-402 154-398 (615)
78 PRK05896 DNA polymerase III su 98.2 3.7E-05 8E-10 91.7 16.2 196 190-401 16-223 (605)
79 PRK07994 DNA polymerase III su 98.1 2.5E-05 5.5E-10 94.7 15.0 194 190-399 16-220 (647)
80 TIGR02397 dnaX_nterm DNA polym 98.1 6.1E-05 1.3E-09 88.5 18.2 184 190-400 14-219 (355)
81 cd01128 rho_factor Transcripti 98.1 4E-06 8.8E-11 90.1 7.3 90 216-306 15-113 (249)
82 KOG2028 ATPase related to the 98.1 4.1E-05 9E-10 81.7 14.3 157 216-394 161-331 (554)
83 PRK14962 DNA polymerase III su 98.1 4.5E-05 9.7E-10 90.4 16.4 187 190-403 14-223 (472)
84 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.7E-11 70.4 3.8 60 1203-1263 1-60 (61)
85 PRK08084 DNA replication initi 98.1 4.8E-05 1E-09 82.3 15.3 156 217-403 45-213 (235)
86 PRK14958 DNA polymerase III su 98.1 4.5E-05 9.7E-10 91.5 16.4 183 190-398 16-219 (509)
87 PRK14951 DNA polymerase III su 98.1 5E-05 1.1E-09 92.1 16.7 197 190-399 16-225 (618)
88 PRK07471 DNA polymerase III su 98.1 8.9E-05 1.9E-09 85.0 17.9 197 190-400 19-239 (365)
89 PRK09376 rho transcription ter 98.1 6.2E-06 1.4E-10 91.8 8.1 90 216-306 168-266 (416)
90 PF14580 LRR_9: Leucine-rich r 98.1 1.6E-06 3.4E-11 87.2 3.1 82 1156-1242 20-103 (175)
91 PRK07940 DNA polymerase III su 98.1 7.5E-05 1.6E-09 86.3 17.2 180 191-400 6-214 (394)
92 KOG1909 Ran GTPase-activating 98.1 1.4E-07 3.1E-12 100.1 -4.5 86 965-1050 29-131 (382)
93 PRK14969 DNA polymerase III su 98.1 6.8E-05 1.5E-09 90.7 17.1 184 190-399 16-221 (527)
94 PRK14964 DNA polymerase III su 98.1 8.8E-05 1.9E-09 87.3 16.9 182 190-397 13-215 (491)
95 PRK13341 recombination factor 98.0 3.8E-05 8.3E-10 95.4 14.1 169 190-394 28-212 (725)
96 COG4886 Leucine-rich repeat (L 98.0 3.9E-06 8.4E-11 100.2 5.2 198 1135-1359 97-295 (394)
97 PRK14955 DNA polymerase III su 98.0 5.2E-05 1.1E-09 89.1 14.5 199 190-398 16-227 (397)
98 KOG2227 Pre-initiation complex 98.0 0.00015 3.3E-09 80.9 16.5 213 188-402 148-375 (529)
99 PRK09112 DNA polymerase III su 98.0 0.00015 3.3E-09 82.6 17.4 197 189-400 22-241 (351)
100 PF13855 LRR_8: Leucine rich r 98.0 4.6E-06 1E-10 68.4 3.6 58 1132-1189 2-59 (61)
101 KOG0532 Leucine-rich repeat (L 98.0 3.6E-07 7.8E-12 102.9 -3.9 78 601-681 117-194 (722)
102 TIGR00678 holB DNA polymerase 98.0 0.00017 3.6E-09 75.6 16.1 91 295-395 95-187 (188)
103 PRK05642 DNA replication initi 98.0 9.4E-05 2E-09 79.9 14.5 156 217-403 45-212 (234)
104 PRK09111 DNA polymerase III su 98.0 0.00011 2.5E-09 89.3 16.7 198 190-400 24-234 (598)
105 PRK08903 DnaA regulatory inact 98.0 7.5E-05 1.6E-09 81.0 13.8 152 217-403 42-203 (227)
106 PRK09087 hypothetical protein; 98.0 6.6E-05 1.4E-09 80.2 13.1 143 217-401 44-197 (226)
107 PF00308 Bac_DnaA: Bacterial d 98.0 0.00013 2.9E-09 77.7 15.3 187 192-401 11-210 (219)
108 PF05621 TniB: Bacterial TniB 98.0 0.00027 5.9E-09 76.3 17.2 204 190-397 34-259 (302)
109 KOG2120 SCF ubiquitin ligase, 98.0 1.6E-07 3.5E-12 96.9 -7.1 107 1131-1237 185-296 (419)
110 PRK14959 DNA polymerase III su 98.0 0.00014 3.1E-09 87.3 16.2 197 190-403 16-225 (624)
111 KOG1909 Ran GTPase-activating 98.0 2.9E-07 6.3E-12 97.9 -5.7 64 985-1048 25-101 (382)
112 PRK07133 DNA polymerase III su 97.9 0.00024 5.2E-09 86.9 17.5 184 190-400 18-221 (725)
113 KOG2120 SCF ubiquitin ligase, 97.9 3.3E-07 7.2E-12 94.7 -5.7 180 967-1190 186-374 (419)
114 KOG2982 Uncharacterized conser 97.9 9.4E-06 2E-10 84.2 4.5 239 1133-1412 47-296 (418)
115 TIGR01242 26Sp45 26S proteasom 97.9 9.8E-05 2.1E-09 86.2 13.5 180 189-393 121-328 (364)
116 PRK08451 DNA polymerase III su 97.9 0.00035 7.5E-09 83.2 17.5 181 190-400 14-219 (535)
117 COG4886 Leucine-rich repeat (L 97.9 6.8E-06 1.5E-10 98.1 3.3 179 600-824 111-290 (394)
118 PRK14970 DNA polymerase III su 97.9 0.00031 6.8E-09 82.4 17.1 181 190-396 17-206 (367)
119 KOG0989 Replication factor C, 97.9 4.6E-05 9.9E-10 80.3 8.6 183 190-393 36-224 (346)
120 PRK14950 DNA polymerase III su 97.9 0.00036 7.8E-09 86.2 17.9 197 190-401 16-223 (585)
121 TIGR00767 rho transcription te 97.8 5.9E-05 1.3E-09 84.8 9.7 90 216-306 167-265 (415)
122 PRK14952 DNA polymerase III su 97.8 0.00035 7.7E-09 84.5 17.0 198 190-403 13-224 (584)
123 PRK14954 DNA polymerase III su 97.8 0.00036 7.9E-09 85.1 17.1 201 190-399 16-229 (620)
124 PRK14953 DNA polymerase III su 97.8 0.00057 1.2E-08 81.7 18.4 184 190-400 16-221 (486)
125 PRK06305 DNA polymerase III su 97.8 0.00052 1.1E-08 81.5 17.5 183 190-400 17-224 (451)
126 PRK14087 dnaA chromosomal repl 97.8 0.00043 9.3E-09 82.2 16.8 170 217-403 141-323 (450)
127 PRK11331 5-methylcytosine-spec 97.8 9.6E-05 2.1E-09 84.7 10.4 110 190-311 175-287 (459)
128 PRK07764 DNA polymerase III su 97.8 0.00046 9.9E-09 87.1 17.4 177 190-397 15-219 (824)
129 TIGR02881 spore_V_K stage V sp 97.8 0.00032 6.9E-09 77.7 13.8 161 191-367 7-192 (261)
130 COG2255 RuvB Holliday junction 97.8 0.001 2.2E-08 69.6 16.1 195 190-403 26-227 (332)
131 PF14516 AAA_35: AAA-like doma 97.7 0.0026 5.5E-08 72.8 21.2 201 189-406 10-246 (331)
132 CHL00181 cbbX CbbX; Provisiona 97.7 0.00092 2E-08 74.3 17.0 135 217-367 59-210 (287)
133 PRK14971 DNA polymerase III su 97.7 0.00077 1.7E-08 83.0 17.4 181 190-397 17-220 (614)
134 PF05673 DUF815: Protein of un 97.7 0.00076 1.6E-08 70.4 14.6 126 187-339 24-154 (249)
135 PRK14948 DNA polymerase III su 97.7 0.00089 1.9E-08 82.4 17.8 197 190-400 16-223 (620)
136 KOG2543 Origin recognition com 97.7 0.0015 3.3E-08 71.2 16.9 168 189-366 5-193 (438)
137 PRK03992 proteasome-activating 97.7 0.00018 3.9E-09 84.2 10.4 179 189-392 130-336 (389)
138 PRK06620 hypothetical protein; 97.7 0.0012 2.6E-08 70.0 15.6 137 218-398 45-188 (214)
139 PRK06647 DNA polymerase III su 97.6 0.0017 3.6E-08 79.0 18.7 194 190-399 16-220 (563)
140 TIGR02880 cbbX_cfxQ probable R 97.6 0.0011 2.4E-08 73.8 15.7 132 219-366 60-208 (284)
141 PRK14965 DNA polymerase III su 97.6 0.0009 1.9E-08 82.2 15.9 194 190-399 16-221 (576)
142 KOG1859 Leucine-rich repeat pr 97.6 3.2E-06 7E-11 97.9 -5.2 126 1132-1264 165-291 (1096)
143 PF12799 LRR_4: Leucine Rich r 97.6 5.4E-05 1.2E-09 56.4 2.8 33 606-638 2-34 (44)
144 PHA02544 44 clamp loader, smal 97.6 0.00059 1.3E-08 78.5 12.8 148 190-364 21-171 (316)
145 PRK05563 DNA polymerase III su 97.6 0.0017 3.8E-08 79.3 17.3 192 190-397 16-218 (559)
146 TIGR00362 DnaA chromosomal rep 97.5 0.0015 3.2E-08 77.7 16.3 161 217-397 136-308 (405)
147 PRK14088 dnaA chromosomal repl 97.5 0.0013 2.8E-08 78.1 15.1 161 217-397 130-303 (440)
148 TIGR02639 ClpA ATP-dependent C 97.5 0.00072 1.6E-08 86.2 13.7 155 190-366 182-358 (731)
149 PRK07399 DNA polymerase III su 97.5 0.003 6.4E-08 71.2 16.7 197 190-400 4-222 (314)
150 PRK12422 chromosomal replicati 97.5 0.004 8.6E-08 73.7 18.0 154 217-392 141-306 (445)
151 KOG0531 Protein phosphatase 1, 97.4 2.7E-05 5.8E-10 92.9 -0.4 196 967-1243 73-271 (414)
152 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0011 2.4E-08 85.0 14.1 155 190-366 187-363 (852)
153 PRK05707 DNA polymerase III su 97.4 0.003 6.5E-08 71.5 15.8 97 295-399 105-203 (328)
154 PRK00149 dnaA chromosomal repl 97.4 0.002 4.4E-08 77.6 15.3 160 216-397 147-320 (450)
155 PF00004 AAA: ATPase family as 97.4 0.00038 8.2E-09 68.3 7.6 22 220-241 1-22 (132)
156 CHL00095 clpC Clp protease ATP 97.4 0.00087 1.9E-08 86.6 12.7 156 190-365 179-353 (821)
157 COG0593 DnaA ATPase involved i 97.4 0.0068 1.5E-07 69.2 17.7 162 189-370 87-261 (408)
158 PRK14086 dnaA chromosomal repl 97.4 0.0025 5.5E-08 76.5 14.9 161 217-397 314-486 (617)
159 KOG0531 Protein phosphatase 1, 97.3 4.4E-05 9.5E-10 91.1 -0.2 107 1131-1243 95-202 (414)
160 PF12799 LRR_4: Leucine Rich r 97.3 0.00021 4.7E-09 53.2 3.2 40 628-669 1-40 (44)
161 KOG1859 Leucine-rich repeat pr 97.3 1.7E-05 3.7E-10 92.1 -4.3 146 1131-1292 84-242 (1096)
162 PTZ00361 26 proteosome regulat 97.2 0.001 2.2E-08 77.7 9.7 158 190-367 183-368 (438)
163 PRK11034 clpA ATP-dependent Cl 97.2 0.0024 5.1E-08 80.2 13.0 157 190-366 186-362 (758)
164 KOG2004 Mitochondrial ATP-depe 97.2 0.012 2.7E-07 69.4 17.4 105 189-307 410-516 (906)
165 smart00382 AAA ATPases associa 97.2 0.0018 3.9E-08 64.6 9.6 87 218-308 3-90 (148)
166 KOG3665 ZYG-1-like serine/thre 97.2 0.00036 7.9E-09 86.5 5.1 84 596-681 113-200 (699)
167 PRK08769 DNA polymerase III su 97.2 0.015 3.2E-07 65.3 17.2 177 196-400 10-209 (319)
168 TIGR00602 rad24 checkpoint pro 97.2 0.0018 3.9E-08 79.0 10.8 50 190-240 84-133 (637)
169 PRK08058 DNA polymerase III su 97.2 0.0065 1.4E-07 69.5 14.8 162 192-365 7-181 (329)
170 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0042 9.1E-08 80.6 14.8 155 190-366 173-349 (852)
171 KOG2982 Uncharacterized conser 97.1 0.00017 3.6E-09 75.2 1.3 87 1202-1289 198-286 (418)
172 COG3267 ExeA Type II secretory 97.1 0.016 3.4E-07 60.4 15.4 180 216-402 50-248 (269)
173 PTZ00454 26S protease regulato 97.1 0.0028 6E-08 73.7 11.3 179 190-393 145-351 (398)
174 PRK06090 DNA polymerase III su 97.1 0.017 3.7E-07 64.7 16.8 177 197-399 10-201 (319)
175 TIGR00763 lon ATP-dependent pr 97.1 0.011 2.3E-07 76.2 17.3 52 189-240 319-370 (775)
176 TIGR03689 pup_AAA proteasome A 97.1 0.0065 1.4E-07 72.2 14.1 167 190-366 182-378 (512)
177 PRK08116 hypothetical protein; 97.1 0.0018 3.9E-08 71.3 8.8 104 218-336 115-221 (268)
178 PRK10865 protein disaggregatio 97.0 0.006 1.3E-07 78.8 14.5 45 190-240 178-222 (857)
179 PF13177 DNA_pol3_delta2: DNA 97.0 0.0086 1.9E-07 60.5 12.6 138 194-353 1-161 (162)
180 PRK06871 DNA polymerase III su 97.0 0.025 5.5E-07 63.5 17.0 176 198-396 10-200 (325)
181 PRK10787 DNA-binding ATP-depen 97.0 0.0075 1.6E-07 76.6 14.2 166 189-366 321-506 (784)
182 KOG1514 Origin recognition com 97.0 0.026 5.7E-07 67.0 17.2 208 190-403 396-625 (767)
183 KOG4579 Leucine-rich repeat (L 96.9 0.00013 2.9E-09 67.0 -1.5 110 1132-1243 28-139 (177)
184 PRK10536 hypothetical protein; 96.9 0.0062 1.3E-07 64.7 10.4 136 190-337 55-214 (262)
185 KOG0991 Replication factor C, 96.9 0.004 8.6E-08 62.9 8.3 45 190-240 27-71 (333)
186 PRK08118 topology modulation p 96.9 0.00059 1.3E-08 69.3 2.6 34 219-252 3-37 (167)
187 CHL00176 ftsH cell division pr 96.9 0.0092 2E-07 73.6 13.3 177 190-391 183-386 (638)
188 TIGR02640 gas_vesic_GvpN gas v 96.8 0.025 5.3E-07 62.5 15.4 41 219-264 23-63 (262)
189 COG1222 RPT1 ATP-dependent 26S 96.8 0.016 3.4E-07 63.2 13.0 188 191-404 152-372 (406)
190 TIGR01241 FtsH_fam ATP-depende 96.8 0.016 3.5E-07 70.7 14.9 184 190-398 55-266 (495)
191 COG0542 clpA ATP-binding subun 96.8 0.0044 9.5E-08 76.0 9.4 139 189-335 490-643 (786)
192 COG0466 Lon ATP-dependent Lon 96.7 0.011 2.4E-07 70.4 11.8 164 189-366 322-508 (782)
193 COG1373 Predicted ATPase (AAA+ 96.7 0.015 3.3E-07 68.1 13.0 119 219-362 39-163 (398)
194 KOG0741 AAA+-type ATPase [Post 96.7 0.051 1.1E-06 62.0 16.1 149 215-389 536-704 (744)
195 PRK07261 topology modulation p 96.7 0.0044 9.6E-08 63.3 7.5 66 219-307 2-68 (171)
196 PF04665 Pox_A32: Poxvirus A32 96.7 0.0029 6.3E-08 66.9 6.1 36 218-255 14-49 (241)
197 PRK08181 transposase; Validate 96.6 0.0035 7.5E-08 68.5 6.7 101 218-336 107-209 (269)
198 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0019 4.2E-08 72.2 4.7 51 191-241 52-102 (361)
199 PRK07993 DNA polymerase III su 96.6 0.078 1.7E-06 60.4 17.7 178 197-397 9-202 (334)
200 PF10443 RNA12: RNA12 protein; 96.6 0.03 6.4E-07 63.7 13.8 199 195-409 1-288 (431)
201 PRK12377 putative replication 96.6 0.0023 4.9E-08 69.0 4.9 102 217-335 101-205 (248)
202 PRK08939 primosomal protein Dn 96.6 0.0064 1.4E-07 68.1 8.4 123 194-336 135-261 (306)
203 TIGR02639 ClpA ATP-dependent C 96.6 0.0077 1.7E-07 77.0 10.1 120 190-322 454-579 (731)
204 TIGR03346 chaperone_ClpB ATP-d 96.5 0.011 2.3E-07 77.0 11.3 137 190-335 565-717 (852)
205 PF01695 IstB_IS21: IstB-like 96.5 0.0026 5.7E-08 65.2 4.6 101 217-336 47-150 (178)
206 PRK06964 DNA polymerase III su 96.5 0.043 9.4E-07 62.2 14.7 94 295-400 131-226 (342)
207 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0067 1.5E-07 78.0 9.1 138 189-335 565-718 (852)
208 PRK13531 regulatory ATPase Rav 96.5 0.0069 1.5E-07 70.4 8.2 42 191-240 21-62 (498)
209 PF02562 PhoH: PhoH-like prote 96.5 0.0089 1.9E-07 61.9 8.2 129 194-337 4-157 (205)
210 PF00448 SRP54: SRP54-type pro 96.4 0.0035 7.5E-08 65.3 4.8 87 217-305 1-92 (196)
211 COG2607 Predicted ATPase (AAA+ 96.4 0.062 1.3E-06 55.2 13.3 109 187-322 57-166 (287)
212 PRK10865 protein disaggregatio 96.4 0.014 3E-07 75.5 11.2 137 190-335 568-720 (857)
213 PRK12608 transcription termina 96.4 0.016 3.5E-07 65.2 10.1 101 199-305 120-229 (380)
214 PRK09183 transposase/IS protei 96.4 0.0094 2E-07 65.4 8.0 101 218-336 103-206 (259)
215 PRK07952 DNA replication prote 96.4 0.012 2.6E-07 63.2 8.6 103 217-335 99-204 (244)
216 PRK06921 hypothetical protein; 96.4 0.012 2.6E-07 64.8 8.7 38 217-255 117-154 (266)
217 PF07693 KAP_NTPase: KAP famil 96.3 0.11 2.3E-06 60.3 17.1 45 196-243 2-46 (325)
218 PRK06526 transposase; Provisio 96.3 0.0053 1.1E-07 66.8 5.7 101 217-336 98-201 (254)
219 CHL00095 clpC Clp protease ATP 96.3 0.017 3.8E-07 74.8 10.9 136 190-335 509-661 (821)
220 COG0470 HolB ATPase involved i 96.3 0.025 5.5E-07 65.5 11.4 142 191-352 2-167 (325)
221 TIGR02237 recomb_radB DNA repa 96.2 0.014 3.1E-07 62.4 8.4 49 215-266 10-58 (209)
222 PHA00729 NTP-binding motif con 96.2 0.034 7.4E-07 58.2 10.6 25 216-240 16-40 (226)
223 PRK04132 replication factor C 96.2 0.076 1.7E-06 67.1 15.5 154 225-398 574-730 (846)
224 KOG1644 U2-associated snRNP A' 96.2 0.0064 1.4E-07 60.5 4.8 54 1132-1187 43-96 (233)
225 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.027 5.8E-07 61.6 10.5 50 215-264 17-70 (235)
226 COG2812 DnaX DNA polymerase II 96.2 0.017 3.7E-07 68.2 9.0 189 190-394 16-215 (515)
227 PRK04296 thymidine kinase; Pro 96.1 0.0098 2.1E-07 62.0 6.4 113 218-337 3-117 (190)
228 KOG0733 Nuclear AAA ATPase (VC 96.1 0.099 2.1E-06 61.0 14.5 189 190-403 190-410 (802)
229 PRK06835 DNA replication prote 96.1 0.0072 1.6E-07 68.3 5.3 103 218-336 184-289 (329)
230 COG1223 Predicted ATPase (AAA+ 96.1 0.074 1.6E-06 55.1 11.9 157 190-366 121-297 (368)
231 KOG4579 Leucine-rich repeat (L 96.1 0.00078 1.7E-08 62.2 -1.9 65 605-671 77-141 (177)
232 TIGR01243 CDC48 AAA family ATP 96.1 0.065 1.4E-06 69.0 14.6 179 190-393 453-657 (733)
233 CHL00195 ycf46 Ycf46; Provisio 96.1 0.036 7.9E-07 66.2 11.3 180 190-393 228-429 (489)
234 PRK09361 radB DNA repair and r 96.0 0.019 4.1E-07 62.2 8.3 47 215-264 21-67 (225)
235 PRK12724 flagellar biosynthesi 96.0 0.021 4.5E-07 65.4 8.7 25 216-240 222-246 (432)
236 PF00158 Sigma54_activat: Sigm 96.0 0.024 5.3E-07 57.4 8.3 131 192-336 1-144 (168)
237 cd00983 recA RecA is a bacter 96.0 0.021 4.6E-07 63.7 8.4 85 215-306 53-143 (325)
238 COG5238 RNA1 Ran GTPase-activa 96.0 0.00036 7.9E-09 71.8 -5.0 86 965-1050 29-131 (388)
239 PRK05541 adenylylsulfate kinas 96.0 0.013 2.8E-07 60.6 6.3 36 216-253 6-41 (176)
240 PF14532 Sigma54_activ_2: Sigm 96.0 0.0084 1.8E-07 59.0 4.6 108 193-336 1-110 (138)
241 KOG1947 Leucine rich repeat pr 95.9 0.00068 1.5E-08 83.9 -4.1 106 1132-1237 189-305 (482)
242 cd01393 recA_like RecA is a b 95.9 0.043 9.3E-07 59.6 10.5 91 215-306 17-124 (226)
243 TIGR02012 tigrfam_recA protein 95.9 0.023 5E-07 63.4 8.3 85 215-306 53-143 (321)
244 PF08423 Rad51: Rad51; InterP 95.9 0.031 6.6E-07 61.2 9.1 57 216-273 37-97 (256)
245 TIGR03499 FlhF flagellar biosy 95.9 0.026 5.6E-07 62.9 8.7 87 216-305 193-281 (282)
246 KOG1969 DNA replication checkp 95.9 0.019 4.1E-07 68.2 7.7 77 215-309 324-400 (877)
247 PF07728 AAA_5: AAA domain (dy 95.9 0.004 8.7E-08 61.5 2.1 86 220-318 2-87 (139)
248 KOG2228 Origin recognition com 95.9 0.064 1.4E-06 58.0 10.9 171 191-366 25-219 (408)
249 PF13207 AAA_17: AAA domain; P 95.9 0.0058 1.3E-07 58.7 3.1 22 219-240 1-22 (121)
250 PRK11889 flhF flagellar biosyn 95.9 0.043 9.2E-07 62.0 10.0 90 216-307 240-331 (436)
251 cd01133 F1-ATPase_beta F1 ATP 95.8 0.034 7.5E-07 60.2 8.9 88 216-305 68-172 (274)
252 KOG1947 Leucine rich repeat pr 95.8 0.0019 4.1E-08 80.0 -0.7 87 965-1051 187-281 (482)
253 PRK08699 DNA polymerase III su 95.8 0.06 1.3E-06 61.0 11.3 71 295-365 112-184 (325)
254 KOG0744 AAA+-type ATPase [Post 95.8 0.059 1.3E-06 57.7 10.1 81 217-307 177-261 (423)
255 TIGR02902 spore_lonB ATP-depen 95.8 0.044 9.5E-07 67.0 10.9 44 191-240 66-109 (531)
256 PRK11034 clpA ATP-dependent Cl 95.8 0.042 9E-07 69.4 10.8 120 190-321 458-582 (758)
257 COG2884 FtsE Predicted ATPase 95.8 0.096 2.1E-06 52.0 10.6 61 281-343 140-204 (223)
258 KOG0730 AAA+-type ATPase [Post 95.7 0.077 1.7E-06 62.9 11.8 178 191-393 435-637 (693)
259 PRK09354 recA recombinase A; P 95.7 0.031 6.7E-07 62.9 8.4 85 215-306 58-148 (349)
260 PRK06696 uridine kinase; Valid 95.7 0.013 2.9E-07 63.1 5.3 43 195-240 3-45 (223)
261 TIGR01243 CDC48 AAA family ATP 95.7 0.081 1.8E-06 68.1 13.3 180 190-394 178-382 (733)
262 KOG1644 U2-associated snRNP A' 95.7 0.0092 2E-07 59.4 3.6 77 1316-1394 87-176 (233)
263 cd01120 RecA-like_NTPases RecA 95.7 0.04 8.6E-07 56.3 8.5 40 219-260 1-40 (165)
264 cd01394 radB RadB. The archaea 95.7 0.033 7.2E-07 60.0 8.1 44 215-260 17-60 (218)
265 PTZ00494 tuzin-like protein; P 95.6 0.81 1.8E-05 51.9 18.3 167 187-366 368-544 (664)
266 COG1419 FlhF Flagellar GTP-bin 95.6 0.039 8.5E-07 62.2 8.4 87 216-305 202-290 (407)
267 PRK15455 PrkA family serine pr 95.6 0.0093 2E-07 70.2 3.7 50 191-240 77-126 (644)
268 TIGR02238 recomb_DMC1 meiotic 95.6 0.048 1E-06 61.4 9.2 59 215-274 94-156 (313)
269 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.043 9.3E-07 54.3 7.7 116 218-336 3-138 (159)
270 PRK14722 flhF flagellar biosyn 95.5 0.041 8.9E-07 62.8 8.4 89 217-307 137-226 (374)
271 PF13604 AAA_30: AAA domain; P 95.5 0.014 3.1E-07 61.1 4.5 108 218-337 19-132 (196)
272 PRK12727 flagellar biosynthesi 95.5 0.058 1.2E-06 63.6 9.7 89 216-306 349-438 (559)
273 KOG1051 Chaperone HSP104 and r 95.5 0.054 1.2E-06 67.8 10.0 122 190-322 562-686 (898)
274 KOG3665 ZYG-1-like serine/thre 95.5 0.0081 1.8E-07 74.8 3.0 110 1131-1242 148-265 (699)
275 PRK05703 flhF flagellar biosyn 95.5 0.089 1.9E-06 62.1 11.4 87 217-305 221-308 (424)
276 TIGR01650 PD_CobS cobaltochela 95.5 0.28 6.1E-06 54.7 14.4 42 191-240 46-87 (327)
277 KOG0731 AAA+-type ATPase conta 95.4 0.24 5.1E-06 60.9 14.7 185 189-397 310-522 (774)
278 KOG2035 Replication factor C, 95.4 0.13 2.8E-06 54.0 10.7 207 192-420 15-259 (351)
279 PHA02244 ATPase-like protein 95.4 0.06 1.3E-06 60.5 8.8 22 219-240 121-142 (383)
280 PLN03187 meiotic recombination 95.3 0.077 1.7E-06 60.2 9.6 59 215-274 124-186 (344)
281 KOG0733 Nuclear AAA ATPase (VC 95.3 0.19 4.2E-06 58.7 12.5 155 217-393 545-718 (802)
282 PRK06762 hypothetical protein; 95.3 0.18 3.8E-06 51.6 11.5 24 217-240 2-25 (166)
283 PF07724 AAA_2: AAA domain (Cd 95.3 0.015 3.3E-07 59.0 3.6 41 217-258 3-43 (171)
284 PF13671 AAA_33: AAA domain; P 95.2 0.061 1.3E-06 53.4 7.9 21 219-239 1-21 (143)
285 cd03214 ABC_Iron-Siderophores_ 95.2 0.17 3.6E-06 52.5 11.3 121 217-341 25-163 (180)
286 PRK08233 hypothetical protein; 95.2 0.055 1.2E-06 56.4 7.8 24 217-240 3-26 (182)
287 PF00560 LRR_1: Leucine Rich R 95.2 0.0078 1.7E-07 37.1 0.8 20 607-626 2-21 (22)
288 PRK00771 signal recognition pa 95.2 0.12 2.7E-06 60.6 11.3 89 215-306 93-185 (437)
289 COG1484 DnaC DNA replication p 95.2 0.052 1.1E-06 59.2 7.7 81 217-314 105-185 (254)
290 PRK05022 anaerobic nitric oxid 95.2 0.24 5.3E-06 60.7 14.4 156 189-356 186-363 (509)
291 PRK10867 signal recognition pa 95.1 0.065 1.4E-06 62.7 8.7 90 216-306 99-193 (433)
292 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.16 3.5E-06 50.2 10.3 106 217-341 26-132 (144)
293 TIGR00959 ffh signal recogniti 95.1 0.071 1.5E-06 62.5 8.8 90 216-306 98-192 (428)
294 COG1875 NYN ribonuclease and A 95.1 0.069 1.5E-06 58.5 7.9 134 192-337 226-389 (436)
295 KOG0735 AAA+-type ATPase [Post 95.1 0.052 1.1E-06 64.3 7.5 72 217-306 431-504 (952)
296 COG1618 Predicted nucleotide k 95.1 0.02 4.3E-07 55.0 3.4 27 217-243 5-31 (179)
297 COG1136 SalX ABC-type antimicr 95.0 0.18 3.9E-06 52.9 10.7 61 282-342 146-209 (226)
298 PRK04301 radA DNA repair and r 95.0 0.094 2E-06 59.9 9.5 57 216-273 101-161 (317)
299 PRK12723 flagellar biosynthesi 95.0 0.11 2.5E-06 59.9 10.1 90 216-307 173-265 (388)
300 COG0468 RecA RecA/RadA recombi 95.0 0.086 1.9E-06 57.5 8.6 89 214-305 57-150 (279)
301 KOG0734 AAA+-type ATPase conta 95.0 0.043 9.4E-07 62.6 6.4 52 190-241 304-361 (752)
302 PLN03186 DNA repair protein RA 95.0 0.067 1.5E-06 60.7 8.1 58 215-273 121-182 (342)
303 cd00544 CobU Adenosylcobinamid 95.0 0.041 8.8E-07 55.7 5.7 79 220-305 2-82 (169)
304 cd03247 ABCC_cytochrome_bd The 95.0 0.14 3.1E-06 52.9 9.9 118 217-340 28-161 (178)
305 PRK06067 flagellar accessory p 95.0 0.097 2.1E-06 57.0 9.1 87 215-306 23-130 (234)
306 KOG0739 AAA+-type ATPase [Post 95.0 0.4 8.6E-06 50.9 12.7 176 191-392 134-334 (439)
307 TIGR02239 recomb_RAD51 DNA rep 94.9 0.082 1.8E-06 59.7 8.6 58 215-273 94-155 (316)
308 COG5238 RNA1 Ran GTPase-activa 94.9 0.028 6.1E-07 58.4 4.3 114 1150-1264 87-226 (388)
309 PRK07132 DNA polymerase III su 94.9 1.1 2.3E-05 50.2 17.0 157 217-399 18-185 (299)
310 cd03228 ABCC_MRP_Like The MRP 94.9 0.15 3.2E-06 52.4 9.7 118 217-341 28-160 (171)
311 PLN00020 ribulose bisphosphate 94.9 0.069 1.5E-06 59.5 7.5 27 215-241 146-172 (413)
312 cd03238 ABC_UvrA The excision 94.8 0.14 3.1E-06 52.2 9.2 114 217-340 21-153 (176)
313 COG1102 Cmk Cytidylate kinase 94.8 0.067 1.5E-06 51.5 6.1 44 219-275 2-45 (179)
314 cd03222 ABC_RNaseL_inhibitor T 94.8 0.18 3.9E-06 51.6 9.7 104 217-341 25-137 (177)
315 cd01131 PilT Pilus retraction 94.7 0.048 1E-06 57.4 5.7 111 218-339 2-112 (198)
316 cd02025 PanK Pantothenate kina 94.7 0.1 2.3E-06 55.7 8.3 22 219-240 1-22 (220)
317 PF00485 PRK: Phosphoribulokin 94.7 0.11 2.5E-06 54.5 8.5 80 219-300 1-87 (194)
318 PTZ00035 Rad51 protein; Provis 94.7 0.17 3.7E-06 57.8 10.4 58 215-273 116-177 (337)
319 COG0572 Udk Uridine kinase [Nu 94.7 0.068 1.5E-06 55.3 6.4 79 215-297 6-85 (218)
320 cd03216 ABC_Carb_Monos_I This 94.7 0.13 2.7E-06 52.3 8.5 118 217-341 26-147 (163)
321 PRK12726 flagellar biosynthesi 94.7 0.14 3.1E-06 57.7 9.4 90 216-307 205-296 (407)
322 cd03115 SRP The signal recogni 94.7 0.11 2.4E-06 53.5 8.2 22 219-240 2-23 (173)
323 TIGR01817 nifA Nif-specific re 94.7 0.17 3.8E-06 62.6 11.3 132 189-335 195-340 (534)
324 COG4608 AppF ABC-type oligopep 94.6 0.15 3.3E-06 54.3 9.0 125 217-344 39-178 (268)
325 PRK13695 putative NTPase; Prov 94.6 0.02 4.4E-07 58.9 2.6 22 219-240 2-23 (174)
326 PRK14974 cell division protein 94.6 0.18 4E-06 57.0 10.3 89 216-307 139-233 (336)
327 PRK11608 pspF phage shock prot 94.6 0.1 2.3E-06 59.6 8.5 134 191-336 7-151 (326)
328 COG0464 SpoVK ATPases of the A 94.6 0.25 5.5E-06 60.6 12.4 133 215-367 274-424 (494)
329 TIGR00064 ftsY signal recognit 94.6 0.13 2.8E-06 56.9 8.7 89 215-306 70-164 (272)
330 COG0542 clpA ATP-binding subun 94.5 0.37 8E-06 59.8 13.1 155 190-366 170-346 (786)
331 PF00154 RecA: recA bacterial 94.5 0.072 1.6E-06 59.3 6.5 85 215-306 51-141 (322)
332 cd03223 ABCD_peroxisomal_ALDP 94.5 0.29 6.2E-06 49.9 10.5 118 217-340 27-152 (166)
333 TIGR02236 recomb_radA DNA repa 94.5 0.15 3.3E-06 58.2 9.5 57 216-273 94-154 (310)
334 PRK05439 pantothenate kinase; 94.5 0.19 4.1E-06 56.0 9.7 82 214-297 83-166 (311)
335 TIGR00554 panK_bact pantothena 94.4 0.19 4.1E-06 55.6 9.6 25 215-239 60-84 (290)
336 PRK15429 formate hydrogenlyase 94.4 0.15 3.3E-06 65.2 10.2 135 190-336 376-521 (686)
337 PRK05800 cobU adenosylcobinami 94.4 0.043 9.4E-07 55.7 4.3 80 219-305 3-85 (170)
338 PRK09270 nucleoside triphospha 94.3 0.18 4E-06 54.5 9.2 26 215-240 31-56 (229)
339 cd01122 GP4d_helicase GP4d_hel 94.3 0.28 6E-06 54.9 11.0 53 217-272 30-82 (271)
340 KOG2739 Leucine-rich acidic nu 94.3 0.03 6.6E-07 58.6 2.7 38 1203-1240 65-104 (260)
341 PF00006 ATP-synt_ab: ATP synt 94.2 0.16 3.4E-06 53.6 8.0 85 217-305 15-114 (215)
342 PRK13948 shikimate kinase; Pro 94.2 0.39 8.4E-06 49.3 10.6 25 216-240 9-33 (182)
343 PRK10733 hflB ATP-dependent me 94.1 0.33 7.1E-06 61.1 12.1 157 191-367 153-336 (644)
344 PRK07667 uridine kinase; Provi 94.1 0.065 1.4E-06 56.1 5.1 38 199-240 3-40 (193)
345 KOG0728 26S proteasome regulat 94.1 0.84 1.8E-05 47.1 12.5 188 191-403 147-367 (404)
346 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.33 7.1E-06 51.9 10.1 122 218-341 31-204 (254)
347 cd02019 NK Nucleoside/nucleoti 94.1 0.039 8.4E-07 46.3 2.7 22 219-240 1-22 (69)
348 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.063 1.4E-06 59.6 5.0 52 189-240 60-111 (358)
349 cd03230 ABC_DR_subfamily_A Thi 94.1 0.19 4.2E-06 51.6 8.4 119 217-341 26-160 (173)
350 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.25 5.5E-06 53.7 9.7 49 215-267 19-67 (237)
351 KOG0736 Peroxisome assembly fa 94.0 1.3 2.9E-05 53.7 15.8 98 190-307 672-775 (953)
352 PF01583 APS_kinase: Adenylyls 94.0 0.066 1.4E-06 52.7 4.5 36 217-254 2-37 (156)
353 cd03246 ABCC_Protease_Secretio 94.0 0.19 4.1E-06 51.7 8.2 120 217-340 28-160 (173)
354 PRK14723 flhF flagellar biosyn 94.0 0.3 6.4E-06 60.9 11.0 88 217-306 185-273 (767)
355 PF13238 AAA_18: AAA domain; P 94.0 0.038 8.3E-07 53.7 2.8 21 220-240 1-21 (129)
356 PTZ00088 adenylate kinase 1; P 93.9 0.053 1.1E-06 58.0 4.0 22 219-240 8-29 (229)
357 PRK06002 fliI flagellum-specif 93.9 0.25 5.5E-06 57.6 9.7 86 217-305 165-263 (450)
358 PRK06547 hypothetical protein; 93.9 0.078 1.7E-06 54.0 5.0 26 215-240 13-38 (172)
359 cd01125 repA Hexameric Replica 93.9 0.37 8.1E-06 52.6 10.7 22 219-240 3-24 (239)
360 TIGR02974 phageshock_pspF psp 93.9 0.14 3.1E-06 58.4 7.6 45 192-240 1-45 (329)
361 PRK00889 adenylylsulfate kinas 93.8 0.14 3.1E-06 52.7 6.9 25 217-241 4-28 (175)
362 COG0563 Adk Adenylate kinase a 93.8 0.086 1.9E-06 53.8 5.0 22 219-240 2-23 (178)
363 TIGR00390 hslU ATP-dependent p 93.8 0.17 3.7E-06 58.0 7.7 51 190-240 12-70 (441)
364 TIGR00235 udk uridine kinase. 93.7 0.056 1.2E-06 57.5 3.7 25 216-240 5-29 (207)
365 KOG2123 Uncharacterized conser 93.7 0.0048 1E-07 64.1 -4.1 97 1132-1233 20-123 (388)
366 PRK05480 uridine/cytidine kina 93.7 0.058 1.3E-06 57.6 3.8 25 216-240 5-29 (209)
367 cd02027 APSK Adenosine 5'-phos 93.7 0.34 7.4E-06 48.2 9.1 22 219-240 1-22 (149)
368 COG1126 GlnQ ABC-type polar am 93.7 0.73 1.6E-05 47.2 11.1 123 217-342 28-202 (240)
369 PRK14721 flhF flagellar biosyn 93.7 0.3 6.4E-06 56.9 9.7 88 216-305 190-278 (420)
370 PF12775 AAA_7: P-loop contain 93.7 0.063 1.4E-06 59.3 4.1 91 200-309 23-113 (272)
371 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.2 4.4E-06 55.1 8.0 40 216-257 35-74 (259)
372 PF00560 LRR_1: Leucine Rich R 93.6 0.036 7.8E-07 34.2 1.2 19 630-649 2-20 (22)
373 PRK06995 flhF flagellar biosyn 93.6 0.37 8E-06 57.2 10.4 88 217-306 256-344 (484)
374 PF08433 KTI12: Chromatin asso 93.6 0.18 4E-06 55.3 7.5 23 218-240 2-24 (270)
375 COG4618 ArpD ABC-type protease 93.6 0.22 4.8E-06 57.3 8.1 23 217-239 362-384 (580)
376 PTZ00301 uridine kinase; Provi 93.6 0.084 1.8E-06 55.6 4.7 23 217-239 3-25 (210)
377 COG0396 sufC Cysteine desulfur 93.6 0.73 1.6E-05 47.7 10.9 61 288-348 154-216 (251)
378 TIGR00708 cobA cob(I)alamin ad 93.5 0.38 8.1E-06 48.3 8.8 115 218-336 6-140 (173)
379 PRK08972 fliI flagellum-specif 93.4 0.3 6.4E-06 56.8 8.9 85 217-305 162-261 (444)
380 PF13306 LRR_5: Leucine rich r 93.4 0.2 4.3E-06 48.6 6.7 82 1150-1236 30-112 (129)
381 KOG1532 GTPase XAB1, interacts 93.4 0.3 6.6E-06 51.1 8.0 27 215-241 17-43 (366)
382 cd03229 ABC_Class3 This class 93.4 0.28 6E-06 50.8 8.1 24 217-240 26-49 (178)
383 PF00910 RNA_helicase: RNA hel 93.3 0.05 1.1E-06 50.5 2.2 21 220-240 1-21 (107)
384 PF13306 LRR_5: Leucine rich r 93.3 0.19 4.1E-06 48.7 6.4 104 1150-1260 7-111 (129)
385 TIGR00150 HI0065_YjeE ATPase, 93.3 0.13 2.8E-06 49.2 4.9 42 197-242 6-47 (133)
386 COG1066 Sms Predicted ATP-depe 93.3 0.2 4.4E-06 56.1 7.0 83 216-307 92-179 (456)
387 PF12061 DUF3542: Protein of u 93.3 0.27 5.9E-06 52.4 7.5 55 33-87 318-373 (402)
388 PF07726 AAA_3: ATPase family 93.2 0.046 1E-06 51.1 1.8 27 220-248 2-28 (131)
389 COG1428 Deoxynucleoside kinase 93.2 0.064 1.4E-06 54.6 2.9 25 217-241 4-28 (216)
390 cd01121 Sms Sms (bacterial rad 93.2 0.37 8E-06 55.7 9.4 83 216-306 81-168 (372)
391 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.54 1.2E-05 50.0 10.1 23 217-239 29-51 (213)
392 TIGR02858 spore_III_AA stage I 93.1 0.45 9.8E-06 52.3 9.5 127 199-340 98-233 (270)
393 COG4088 Predicted nucleotide k 93.1 0.26 5.7E-06 49.5 6.8 23 218-240 2-24 (261)
394 cd03283 ABC_MutS-like MutS-lik 93.0 0.5 1.1E-05 49.6 9.4 22 218-239 26-47 (199)
395 PRK04328 hypothetical protein; 93.0 0.32 6.9E-06 53.3 8.2 42 216-259 22-63 (249)
396 PRK09280 F0F1 ATP synthase sub 93.0 0.38 8.2E-06 56.4 9.1 89 216-305 143-247 (463)
397 PRK10463 hydrogenase nickel in 93.0 0.85 1.8E-05 50.1 11.2 26 215-240 102-127 (290)
398 PRK12597 F0F1 ATP synthase sub 93.0 0.19 4.2E-06 59.1 6.8 89 216-305 142-246 (461)
399 PRK09519 recA DNA recombinatio 92.9 0.29 6.3E-06 61.2 8.5 85 215-306 58-148 (790)
400 PRK10923 glnG nitrogen regulat 92.9 0.85 1.9E-05 55.8 12.8 46 191-240 139-184 (469)
401 cd03215 ABC_Carb_Monos_II This 92.9 0.41 8.9E-06 49.7 8.6 24 217-240 26-49 (182)
402 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.33 7.2E-06 49.0 7.7 118 218-341 26-145 (157)
403 TIGR01425 SRP54_euk signal rec 92.9 0.37 8E-06 56.2 8.8 26 216-241 99-124 (429)
404 PRK03839 putative kinase; Prov 92.8 0.08 1.7E-06 54.9 3.2 23 219-241 2-24 (180)
405 TIGR03498 FliI_clade3 flagella 92.8 0.37 8E-06 56.2 8.7 85 217-305 140-239 (418)
406 cd02021 GntK Gluconate kinase 92.8 0.58 1.3E-05 46.8 9.3 22 219-240 1-22 (150)
407 PRK05201 hslU ATP-dependent pr 92.8 0.25 5.4E-06 56.7 7.1 52 189-240 14-73 (443)
408 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.19 4.2E-06 52.8 5.9 121 217-344 29-159 (204)
409 PRK06731 flhF flagellar biosyn 92.8 0.62 1.3E-05 51.1 9.9 89 217-307 75-165 (270)
410 PRK04040 adenylate kinase; Pro 92.7 0.089 1.9E-06 54.5 3.3 23 218-240 3-25 (188)
411 cd01135 V_A-ATPase_B V/A-type 92.7 0.5 1.1E-05 51.3 9.0 89 217-305 69-175 (276)
412 KOG2739 Leucine-rich acidic nu 92.7 0.062 1.3E-06 56.4 2.0 88 1153-1242 41-131 (260)
413 KOG3347 Predicted nucleotide k 92.7 0.18 3.9E-06 47.8 4.7 70 217-296 7-76 (176)
414 PTZ00185 ATPase alpha subunit; 92.7 0.62 1.3E-05 54.6 10.1 91 216-306 188-299 (574)
415 TIGR01360 aden_kin_iso1 adenyl 92.7 0.096 2.1E-06 54.9 3.5 25 216-240 2-26 (188)
416 PF13481 AAA_25: AAA domain; P 92.6 0.48 1E-05 49.8 8.8 41 218-258 33-81 (193)
417 cd03369 ABCC_NFT1 Domain 2 of 92.6 1.1 2.3E-05 47.8 11.5 23 217-239 34-56 (207)
418 cd03217 ABC_FeS_Assembly ABC-t 92.6 0.48 1E-05 50.1 8.7 24 217-240 26-49 (200)
419 PRK05973 replicative DNA helic 92.6 0.5 1.1E-05 50.5 8.7 48 216-267 63-110 (237)
420 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.57 1.2E-05 50.8 9.6 41 216-258 19-59 (229)
421 PRK10416 signal recognition pa 92.6 0.53 1.1E-05 53.3 9.4 26 216-241 113-138 (318)
422 COG2401 ABC-type ATPase fused 92.6 0.16 3.6E-06 56.4 5.1 157 189-346 370-578 (593)
423 KOG0738 AAA+-type ATPase [Post 92.6 0.29 6.4E-06 54.1 6.9 51 190-240 212-268 (491)
424 PRK12678 transcription termina 92.5 0.22 4.9E-06 58.8 6.4 89 216-305 415-512 (672)
425 PRK00625 shikimate kinase; Pro 92.5 0.09 2E-06 53.5 2.9 22 219-240 2-23 (173)
426 cd03263 ABC_subfamily_A The AB 92.5 0.87 1.9E-05 49.1 10.7 24 217-240 28-51 (220)
427 PF06745 KaiC: KaiC; InterPro 92.5 0.2 4.4E-06 54.2 5.8 86 216-305 18-124 (226)
428 cd03233 ABC_PDR_domain1 The pl 92.4 1.1 2.3E-05 47.5 11.1 24 217-240 33-56 (202)
429 COG4181 Predicted ABC-type tra 92.4 1.1 2.5E-05 43.7 9.8 84 260-344 122-215 (228)
430 PF13479 AAA_24: AAA domain 92.4 0.34 7.5E-06 51.6 7.3 31 218-258 4-34 (213)
431 TIGR03575 selen_PSTK_euk L-ser 92.4 0.35 7.6E-06 54.7 7.6 22 220-241 2-23 (340)
432 PF03969 AFG1_ATPase: AFG1-lik 92.3 0.2 4.3E-06 57.6 5.7 102 216-336 61-167 (362)
433 PF06309 Torsin: Torsin; Inte 92.3 0.21 4.6E-06 46.7 4.8 49 192-240 27-76 (127)
434 PRK15453 phosphoribulokinase; 92.3 0.57 1.2E-05 50.9 8.6 24 216-239 4-27 (290)
435 PRK06217 hypothetical protein; 92.3 0.22 4.8E-06 51.7 5.6 23 219-241 3-25 (183)
436 PF03308 ArgK: ArgK protein; 92.3 0.21 4.6E-06 52.9 5.2 60 198-261 14-73 (266)
437 cd01134 V_A-ATPase_A V/A-type 92.2 0.79 1.7E-05 51.3 9.8 48 217-268 157-205 (369)
438 PRK08149 ATP synthase SpaL; Va 92.2 0.43 9.3E-06 55.6 8.2 85 217-305 151-250 (428)
439 COG0465 HflB ATP-dependent Zn 92.2 0.98 2.1E-05 54.5 11.4 184 187-395 147-357 (596)
440 PRK08927 fliI flagellum-specif 92.2 0.22 4.7E-06 58.1 5.8 86 216-305 157-257 (442)
441 cd01136 ATPase_flagellum-secre 92.2 0.79 1.7E-05 51.6 10.1 85 217-305 69-168 (326)
442 PF10236 DAP3: Mitochondrial r 92.2 0.82 1.8E-05 51.7 10.4 49 347-396 258-306 (309)
443 KOG3928 Mitochondrial ribosome 92.2 2 4.3E-05 48.4 12.7 24 216-239 178-202 (461)
444 cd02024 NRK1 Nicotinamide ribo 92.1 0.097 2.1E-06 53.8 2.6 22 219-240 1-22 (187)
445 CHL00206 ycf2 Ycf2; Provisiona 92.1 1.1 2.3E-05 60.6 12.4 26 216-241 1629-1654(2281)
446 cd03244 ABCC_MRP_domain2 Domai 92.1 1.1 2.4E-05 48.2 11.1 24 217-240 30-53 (221)
447 PRK13543 cytochrome c biogenes 92.1 1.4 3E-05 47.2 11.6 24 217-240 37-60 (214)
448 KOG0473 Leucine-rich repeat pr 92.1 0.016 3.5E-07 58.7 -2.9 79 601-681 38-116 (326)
449 PRK05917 DNA polymerase III su 92.0 1.4 3E-05 48.6 11.4 130 199-353 6-154 (290)
450 KOG2123 Uncharacterized conser 92.0 0.019 4.1E-07 59.9 -2.6 89 596-686 32-127 (388)
451 TIGR03305 alt_F1F0_F1_bet alte 92.0 0.61 1.3E-05 54.6 9.2 89 216-305 137-241 (449)
452 PRK10751 molybdopterin-guanine 92.0 0.16 3.5E-06 51.2 3.9 25 216-240 5-29 (173)
453 COG2019 AdkA Archaeal adenylat 92.0 0.15 3.2E-06 49.5 3.4 23 217-239 4-26 (189)
454 cd01132 F1_ATPase_alpha F1 ATP 91.9 0.36 7.9E-06 52.3 6.7 85 217-305 69-170 (274)
455 cd02023 UMPK Uridine monophosp 91.9 0.1 2.3E-06 55.1 2.7 22 219-240 1-22 (198)
456 PRK07276 DNA polymerase III su 91.9 4.7 0.0001 44.7 15.4 69 295-364 103-173 (290)
457 TIGR01359 UMP_CMP_kin_fam UMP- 91.8 0.11 2.3E-06 54.2 2.6 22 219-240 1-22 (183)
458 PLN02348 phosphoribulokinase 91.8 0.52 1.1E-05 53.8 8.1 26 215-240 47-72 (395)
459 PRK09544 znuC high-affinity zi 91.8 0.99 2.2E-05 49.6 10.3 24 217-240 30-53 (251)
460 TIGR02322 phosphon_PhnN phosph 91.8 0.13 2.8E-06 53.3 3.2 23 218-240 2-24 (179)
461 COG5635 Predicted NTPase (NACH 91.8 0.21 4.7E-06 64.9 5.8 184 216-404 221-427 (824)
462 PF05659 RPW8: Arabidopsis bro 91.8 4.5 9.8E-05 39.6 13.4 82 5-86 3-85 (147)
463 PRK11388 DNA-binding transcrip 91.7 0.6 1.3E-05 59.4 9.7 130 190-335 325-466 (638)
464 COG0541 Ffh Signal recognition 91.7 1.2 2.6E-05 50.8 10.6 77 199-277 79-159 (451)
465 PRK07594 type III secretion sy 91.7 0.63 1.4E-05 54.4 8.7 86 216-305 154-254 (433)
466 COG1936 Predicted nucleotide k 91.7 0.14 3E-06 50.3 2.8 20 219-238 2-21 (180)
467 cd03254 ABCC_Glucan_exporter_l 91.7 1.4 3E-05 47.8 11.2 24 217-240 29-52 (229)
468 PRK00131 aroK shikimate kinase 91.6 0.14 3E-06 52.9 3.2 24 217-240 4-27 (175)
469 PRK10820 DNA-binding transcrip 91.6 0.44 9.5E-06 58.4 8.0 134 190-336 204-349 (520)
470 PF13245 AAA_19: Part of AAA d 91.6 0.29 6.2E-06 41.9 4.5 23 217-239 10-32 (76)
471 PRK08533 flagellar accessory p 91.6 0.7 1.5E-05 49.8 8.6 48 217-268 24-71 (230)
472 TIGR01040 V-ATPase_V1_B V-type 91.6 0.45 9.8E-06 55.4 7.4 90 216-305 140-256 (466)
473 COG1224 TIP49 DNA helicase TIP 91.6 0.3 6.5E-06 53.4 5.5 55 189-247 38-95 (450)
474 TIGR02915 PEP_resp_reg putativ 91.6 1.3 2.8E-05 53.9 11.9 46 191-240 140-185 (445)
475 PRK05986 cob(I)alamin adenolsy 91.6 0.56 1.2E-05 47.9 7.2 118 217-336 22-158 (191)
476 PRK13765 ATP-dependent proteas 91.6 0.27 5.8E-06 60.8 5.9 75 190-274 31-105 (637)
477 PRK05922 type III secretion sy 91.6 0.58 1.2E-05 54.6 8.3 85 217-305 157-256 (434)
478 PRK09099 type III secretion sy 91.5 0.53 1.2E-05 55.2 8.1 87 216-305 162-262 (441)
479 cd02028 UMPK_like Uridine mono 91.5 0.13 2.8E-06 53.1 2.7 22 219-240 1-22 (179)
480 cd03245 ABCC_bacteriocin_expor 91.5 1.3 2.9E-05 47.6 10.8 24 217-240 30-53 (220)
481 cd00227 CPT Chloramphenicol (C 91.5 0.15 3.3E-06 52.5 3.2 23 218-240 3-25 (175)
482 COG0467 RAD55 RecA-superfamily 91.5 0.21 4.5E-06 55.4 4.6 42 215-258 21-62 (260)
483 TIGR01313 therm_gnt_kin carboh 91.4 0.58 1.2E-05 47.6 7.4 21 220-240 1-21 (163)
484 TIGR01069 mutS2 MutS2 family p 91.4 0.19 4.2E-06 64.0 4.7 24 217-240 322-345 (771)
485 COG3640 CooC CO dehydrogenase 91.4 0.26 5.6E-06 51.0 4.6 42 219-261 2-43 (255)
486 KOG0735 AAA+-type ATPase [Post 91.4 2.8 6.2E-05 50.5 13.5 179 191-394 668-871 (952)
487 TIGR03771 anch_rpt_ABC anchore 91.4 1.5 3.3E-05 47.2 11.0 24 217-240 6-29 (223)
488 COG0529 CysC Adenylylsulfate k 91.3 0.21 4.5E-06 49.1 3.6 26 216-241 22-47 (197)
489 smart00534 MUTSac ATPase domai 91.3 1.1 2.3E-05 46.7 9.3 21 219-239 1-21 (185)
490 PRK00279 adk adenylate kinase; 91.2 0.33 7.2E-06 51.9 5.7 22 219-240 2-23 (215)
491 PRK09580 sufC cysteine desulfu 91.2 1.4 3.1E-05 48.4 10.9 24 217-240 27-50 (248)
492 cd03250 ABCC_MRP_domain1 Domai 91.2 2.6 5.7E-05 44.6 12.5 24 217-240 31-54 (204)
493 KOG0729 26S proteasome regulat 91.2 0.64 1.4E-05 48.3 7.1 49 191-239 178-233 (435)
494 TIGR03496 FliI_clade1 flagella 91.2 0.79 1.7E-05 53.6 9.0 85 217-305 137-236 (411)
495 COG0003 ArsA Predicted ATPase 91.1 0.31 6.8E-06 54.6 5.4 48 217-266 2-49 (322)
496 cd02020 CMPK Cytidine monophos 91.1 0.14 3.1E-06 51.0 2.6 22 219-240 1-22 (147)
497 TIGR03263 guanyl_kin guanylate 91.1 0.16 3.6E-06 52.6 3.1 23 218-240 2-24 (180)
498 COG0714 MoxR-like ATPases [Gen 91.1 0.44 9.6E-06 54.8 7.0 63 191-266 25-87 (329)
499 TIGR00041 DTMP_kinase thymidyl 91.1 0.78 1.7E-05 48.3 8.3 24 218-241 4-27 (195)
500 TIGR03522 GldA_ABC_ATP gliding 91.1 1.8 3.9E-05 49.1 11.7 24 217-240 28-51 (301)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-81 Score=773.81 Aligned_cols=793 Identities=29% Similarity=0.415 Sum_probs=578.7
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCccccc
Q 000568 26 QFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAH 105 (1416)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~~r~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~ 105 (1416)
.++....++++.+..|++.|..++++++||++++.....+..|...+++++|++||.++.+.......+..+. .
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~-l----- 91 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL-L----- 91 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-h-----
Confidence 3455567888999999999999999999999999888899999999999999999999999988766543210 0
Q ss_pred CCcccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCCccccccCCC
Q 000568 106 DHDQTSSSRRSTTTKFRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESS--AGGSKKAMQRLPT 183 (1416)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (1416)
......++.. |.. .++++.+..+..+.+++..+......++..... .+.........++
T Consensus 92 ----------~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~ 152 (889)
T KOG4658|consen 92 ----------STRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVET 152 (889)
T ss_pred ----------hhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhccc
Confidence 0000011111 221 234455555555555555555554444432211 1100111112233
Q ss_pred cccccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHH
Q 000568 184 TSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 184 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.+...... ||.++.++++.+.|.+++ ..+++|+||||+||||||++++++.. ++.+|+.++||.||+.++..
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 33344444 999999999999998764 38999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 263 RLTKTILRCITKQTID--DSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.++++|++.++..... ....++++..+.+.|++|||+||+||||+. .+|+.+..++|....||+|++|||+..|+.
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 9999999999875433 333478999999999999999999999998 779999999999989999999999999999
Q ss_pred h-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhc
Q 000568 341 I-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419 (1416)
Q Consensus 341 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~ 419 (1416)
. +++...++++.|+.+|||.||++.||..... ..+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+..
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l 382 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVL 382 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccc
Confidence 8 7777899999999999999999999876432 3344899999999999999999999999999999999999999877
Q ss_pred ccC----CCCCccCchhHHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHH
Q 000568 420 IWD----LPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQE 495 (1416)
Q Consensus 420 ~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~ 495 (1416)
.+. .+.+.+.+.++|++||+.||+++|.||+|||+||+||.|+++.||.+||||||+++.+.+.+++++|+.|+.+
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence 555 2334568999999999999999999999999999999999999999999999999877788999999999999
Q ss_pred HHhCCcccccc--CCCCceEehHHHHHHHHHhcc-----CceEEeeCc--ccccccccccCCeeEEEeEccccccccccc
Q 000568 496 LCSRSFFEKSS--NDTSKFVMHDLVNDLARWAAG-----EIYFIMEGT--LEVNKQQRISRNLRHLSYIRGEYDGVKRFA 566 (1416)
Q Consensus 496 L~~~sll~~~~--~~~~~~~mHdlv~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~ 566 (1416)
|++++|+.... ++..+|+|||+||++|.|+|+ ++..++.+. ........-+..+|+++++.+.... ..
T Consensus 463 LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~ 539 (889)
T KOG4658|consen 463 LVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IA 539 (889)
T ss_pred HHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---cc
Confidence 99999999865 456789999999999999999 555555542 1111222334678999998775433 33
Q ss_pred cccCCCcccEEeeeccccCCCCcchhhhhhhcc--cCCCccccceeeccCC-CccccCccccccCcccEEecCCCCchhh
Q 000568 567 GFYDIKYLRTFLSIMLSNNSRGYLACSILHQLL--KLQQLRVFTVLNLSRT-NIRNLPESITKLYNLHTLLLEDCDRLKT 643 (1416)
Q Consensus 567 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~ 643 (1416)
.-.+++.|++|+...... .+..+. .|..++.|++|||++| .+..||++|++|.+||||+|++ +.+..
T Consensus 540 ~~~~~~~L~tLll~~n~~---------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~ 609 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSD---------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH 609 (889)
T ss_pred CCCCCCccceEEEeecch---------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc
Confidence 445667899998775421 122233 3788999999999987 6889999999999999999999 68899
Q ss_pred chHhhcccccCceeecCCccccccccCCcccccCCcccCceEEc-CCCCccccccccccccCcEeEeecCCCcCCccchH
Q 000568 644 LCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVG-NDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAK 722 (1416)
Q Consensus 644 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~ 722 (1416)
+|.++++|++|.||++..+..+..+|..+..|++||+|..+... ..+...+.++.+|.+|. .+.+..... ..
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~ 682 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LL 682 (889)
T ss_pred cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------Hh
Confidence 99999999999999999988666776667779999999776665 44455666666666665 333321111 00
Q ss_pred HhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcceEEEeeeCCCCCCc-CcCC---CC-CCCccEEEEec
Q 000568 723 EAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPI-WLGD---SS-LSKLVTLKFQY 797 (1416)
Q Consensus 723 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-l~~L~~L~L~~ 797 (1416)
...+..+..|.++....... . .........+..+.+|+.|.|.++.+..+.. |... .. ++++.++.+.+
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~---~---~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIE---G---CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhc---c---cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 11122222222211110000 0 0111223456677889999998887754332 3221 11 44666666777
Q ss_pred cCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCC----CCCCCCCccEE-eccCCcccccccccCCcccccCCCcc
Q 000568 798 CGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGND----SPIPFPCLETL-HFEDMKEWEEWIPRGSSQEIEGFPKL 872 (1416)
Q Consensus 798 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~----~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~l~~L 872 (1416)
|.....+.+....|+|+.|.+..|..++.+-....... ...+|++++.+ .+.+...+........ .+++|
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l-----~~~~l 831 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL-----SFLKL 831 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc-----Cccch
Confidence 76655665666778999999988877766533211110 02345555555 3444444333322211 23445
Q ss_pred cEEeecCCcCcc
Q 000568 873 RELHISRCSKLR 884 (1416)
Q Consensus 873 ~~L~l~~c~~L~ 884 (1416)
+.+.+..||++.
T Consensus 832 ~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 832 EELIVEECPKLG 843 (889)
T ss_pred hheehhcCcccc
Confidence 666666665554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-60 Score=629.36 Aligned_cols=704 Identities=22% Similarity=0.332 Sum_probs=446.7
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe---cCC------
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV---SND------ 258 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~------ 258 (1416)
+...+|||+++++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3457999999999999988532 34689999999999999999999998 56778988888742 111
Q ss_pred -----cC-HHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEE
Q 000568 259 -----FD-VIRLTKTILRCITKQTI-DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV 331 (1416)
Q Consensus 259 -----~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv 331 (1416)
+. ...++++++.++..... .... ...+++.++++|+||||||||+. ..|+.+.....+.++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344555555443221 1111 14577889999999999999886 678888776666778999999
Q ss_pred EccchHHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcch
Q 000568 332 TTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSD 411 (1416)
Q Consensus 332 TtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~ 411 (1416)
|||+++++..++...+|+++.|++++||+||+++||+... .++++.+++++|+++|+|+|||++++|++|+++ +.++
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 9999999988777789999999999999999999997643 356789999999999999999999999999987 5789
Q ss_pred HHHHHhhcccCCCCCccCchhHHHHHHhCCCh-hHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 000568 412 WEDVLNSNIWDLPEDRCGILPALRVSYYYLSP-PLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGH 490 (1416)
Q Consensus 412 w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~ 490 (1416)
|+.++++..+.. ...|.++|++||+.|++ ..|.||+++|+|+.+..+ ..+..|+|.+.+.. +
T Consensus 407 W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 407 WMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------h
Confidence 999998876543 24699999999999987 599999999999988655 34777888776532 2
Q ss_pred HHHHHHHhCCccccccCCCCceEehHHHHHHHHHhccCceEEeeCcccccccccccCCeeEEEeEccccccccccccccC
Q 000568 491 QFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYD 570 (1416)
Q Consensus 491 ~~~~~L~~~sll~~~~~~~~~~~mHdlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~ 570 (1416)
..++.|+++||++... ..+.|||++|+||++++.++.. + +....++.....-.+... .-..
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~--~-----------~~~r~~l~~~~di~~vl~---~~~g 530 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSN--E-----------PGEREFLVDAKDICDVLE---DNTG 530 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcC--C-----------CCcceeEeCHHHHHHHHH---hCcc
Confidence 2388999999998753 5699999999999999876531 0 011111111000000000 0000
Q ss_pred CCcccEEeeeccccCCCCcchhhhhhhcccCCCccccceeeccCCCcccc-CccccccCcccEEecCCCC------chhh
Q 000568 571 IKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCD------RLKT 643 (1416)
Q Consensus 571 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~------~~~~ 643 (1416)
....+.+ .|+++...-..+ +..|.++.+|++|.+..+. ....
T Consensus 531 ~~~v~~i-------------------------------~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 531 TKKVLGI-------------------------------TLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred cceeeEE-------------------------------EeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 0111111 011111000000 1123333333333332210 0011
Q ss_pred chHhhcccccCceeecCCccccccccCCcccccCCcccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHH
Q 000568 644 LCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKE 723 (1416)
Q Consensus 644 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~ 723 (1416)
+|.++..++
T Consensus 580 lp~~~~~lp----------------------------------------------------------------------- 588 (1153)
T PLN03210 580 LPEGFDYLP----------------------------------------------------------------------- 588 (1153)
T ss_pred cCcchhhcC-----------------------------------------------------------------------
Confidence 222222221
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCC
Q 000568 724 AHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTS 803 (1416)
Q Consensus 724 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 803 (1416)
.+|+.|.+.++....+|.++. +.+|+.|++.+|.+...
T Consensus 589 ---------------------------------------~~Lr~L~~~~~~l~~lP~~f~---~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 589 ---------------------------------------PKLRLLRWDKYPLRCMPSNFR---PENLVKLQMQGSKLEKL 626 (1153)
T ss_pred ---------------------------------------cccEEEEecCCCCCCCCCcCC---ccCCcEEECcCcccccc
Confidence 223333333333444444432 34444444444433221
Q ss_pred CCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCc
Q 000568 804 LPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKL 883 (1416)
Q Consensus 804 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 883 (1416)
...+..+++|+.|+|+++..+..++ .+..+++|+.|++++|+.+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip------------------------------------~ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP------------------------------------DLSMATNLETLKLSDCSSL 670 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC------------------------------------ccccCCcccEEEecCCCCc
Confidence 1123344444444444332221111 0223445555555555444
Q ss_pred ccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhh
Q 000568 884 RGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCD 963 (1416)
Q Consensus 884 ~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~ 963 (1416)
. .+|..+.++
T Consensus 671 ~-~lp~si~~L--------------------------------------------------------------------- 680 (1153)
T PLN03210 671 V-ELPSSIQYL--------------------------------------------------------------------- 680 (1153)
T ss_pred c-ccchhhhcc---------------------------------------------------------------------
Confidence 3 333221111
Q ss_pred cccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 964 LSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 964 ~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|. .+++|++|++++|. +..+|..+ .+++|+.
T Consensus 681 --~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~~---~l~~L~~ 751 (1153)
T PLN03210 681 --NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSNL---RLENLDE 751 (1153)
T ss_pred --CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cccccccc---ccccccc
Confidence 244444444444444444433 455666666666655555553 23566666766666 34455433 4566666
Q ss_pred eEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhc
Q 000568 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~ 1123 (1416)
|.+.+|... .+.. .+ ..+. .
T Consensus 752 L~l~~~~~~-~l~~-----~~-----------------------------------------~~l~-------------~ 771 (1153)
T PLN03210 752 LILCEMKSE-KLWE-----RV-----------------------------------------QPLT-------------P 771 (1153)
T ss_pred ccccccchh-hccc-----cc-----------------------------------------cccc-------------h
Confidence 666654321 0100 00 0000 0
Q ss_pred cccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCC
Q 000568 1124 LEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCA 1203 (1416)
Q Consensus 1124 ~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 1203 (1416)
.....|++|+.|++++|+....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..+..+|.. .+
T Consensus 772 -~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 772 -LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred -hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cc
Confidence 011123589999999998888889899999999999999998888888766 7899999999999988887743 36
Q ss_pred CcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCccc
Q 000568 1204 KLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSF 1268 (1416)
Q Consensus 1204 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~ 1268 (1416)
+|+.|++++|.+. .+|.++..+++|+.|++++|.-....+.....+ ++|+.|++++|..+..+
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeecCCCcccccc
Confidence 8999999999876 678888999999999999874444445556667 48899999999887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2e-41 Score=384.69 Aligned_cols=278 Identities=37% Similarity=0.645 Sum_probs=226.6
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
||+++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 468999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhCC-CCeeeC
Q 000568 275 QTI---DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGT-APAYQL 350 (1416)
Q Consensus 275 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 350 (1416)
... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567888999999999999999999999987 6888888888877789999999999988877654 578999
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccCCCC---Cc
Q 000568 351 KRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPE---DR 427 (1416)
Q Consensus 351 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 427 (1416)
++|+.+||++||++.++... ...++..++.+++|+++|+|+||||+++|++|+.+.+..+|+.++++..+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997654 222344567889999999999999999999997766788999999775544422 34
Q ss_pred cCchhHHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCC
Q 000568 428 CGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHE 479 (1416)
Q Consensus 428 ~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 479 (1416)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-37 Score=409.45 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=194.4
Q ss_pred CccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
+|++|++++|.+.+.+|..+.++++|+.|++++|.+...+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|+
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~ 362 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLD 362 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEE
Confidence 55555666555555555555566666666666665554444 23445556666666665555555544 4555666666
Q ss_pred EccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccc-cccCCCcchhhcc
Q 000568 1046 IAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESL 1124 (1416)
Q Consensus 1046 l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l-~~~~~~~~~~~~~ 1124 (1416)
+++|.....+ |..+ ..+++|+.+ +..|.+.+.++.
T Consensus 363 Ls~n~l~~~~-----p~~~--------------------------------------~~~~~L~~L~l~~n~l~~~~p~- 398 (968)
T PLN00113 363 LSTNNLTGEI-----PEGL--------------------------------------CSSGNLFKLILFSNSLEGEIPK- 398 (968)
T ss_pred CCCCeeEeeC-----ChhH--------------------------------------hCcCCCCEEECcCCEecccCCH-
Confidence 6554311111 1110 001111111 111111111111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.+..++ +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|... ..++
T Consensus 399 ~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~ 476 (968)
T PLN00113 399 SLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKR 476 (968)
T ss_pred HHhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cccc
Confidence 233343 78888888888888788788888888888888888888777777788888888888777666666443 3478
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCc
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSL 1284 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L 1284 (1416)
|+.|++++|++.+.+|..+.++++|+.|++++|.+.+..|..+..++ +|++|++++|......+.. +..+++|
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~------~~~l~~L 549 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPAS------FSEMPVL 549 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChh------HhCcccC
Confidence 88888888888888888888888888888888888888787777774 8888888887766555543 6777788
Q ss_pred ceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCC
Q 000568 1285 QQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPK 1353 (1416)
Q Consensus 1285 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 1353 (1416)
+.|++++|.. ...+|... ..+++|+.|++++|+-...+|. ...+..+....+.+|+.
T Consensus 550 ~~L~Ls~N~l-~~~~p~~l----------~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 550 SQLDLSQNQL-SGEIPKNL----------GNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNID 606 (968)
T ss_pred CEEECCCCcc-cccCChhH----------hcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCcc
Confidence 8888877532 22333321 3445566666666543334442 23334444444445443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-36 Score=400.52 Aligned_cols=258 Identities=18% Similarity=0.174 Sum_probs=195.1
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
++|+.|++++|.+.+.+|..+..+++|+.|++++|.+...+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L 409 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRV 409 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEE
Confidence 455666666666665666666666666666666666555444 23345566666666666555555554 455666666
Q ss_pred EEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcc
Q 000568 1045 NIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESL 1124 (1416)
Q Consensus 1045 ~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~ 1124 (1416)
++++|... +.++.
T Consensus 410 ~L~~n~l~------------------------------------------------------------------~~~p~- 422 (968)
T PLN00113 410 RLQDNSFS------------------------------------------------------------------GELPS- 422 (968)
T ss_pred ECcCCEee------------------------------------------------------------------eECCh-
Confidence 66554311 11111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.+..++ +|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.....+|..+..+++
T Consensus 423 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 EFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hHhcCC-CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc
Confidence 233343 89999999999999988888999999999999999998888765 4589999999988877778877777899
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCc
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSL 1284 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L 1284 (1416)
|+.|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..++ +|+.|++++|.....+|.. +..+++|
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~------l~~l~~L 573 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP-VLSQLDLSQNQLSGEIPKN------LGNVESL 573 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc-cCCEEECCCCcccccCChh------HhcCccc
Confidence 99999999999999999999999999999999999999999999995 9999999999877666654 8889999
Q ss_pred ceEEEeccCCcccccCCc
Q 000568 1285 QQLRIRGRDQDVVSFPPE 1302 (1416)
Q Consensus 1285 ~~L~l~~~~~~~~~~~~~ 1302 (1416)
+.|++++|. ....+|..
T Consensus 574 ~~l~ls~N~-l~~~~p~~ 590 (968)
T PLN00113 574 VQVNISHNH-LHGSLPST 590 (968)
T ss_pred CEEeccCCc-ceeeCCCc
Confidence 999999975 33456643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2.3e-28 Score=256.34 Aligned_cols=475 Identities=20% Similarity=0.226 Sum_probs=299.9
Q ss_pred cCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCc
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQ 679 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 679 (1416)
.+++|..|.+|++++|++.++|.+|+++..++.|+.++| .+.++|+.++.+.+|++|+.++|. +.++|++|+.+..|.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhh
Confidence 677888888999999999999999999999999999995 788899999999999999999998 889999988887777
Q ss_pred ccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccC
Q 000568 680 TLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDML 759 (1416)
Q Consensus 680 ~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 759 (1416)
.|..... + +.. ..+.+
T Consensus 141 dl~~~~N------------------------~---i~s-------------------------------------lp~~~ 156 (565)
T KOG0472|consen 141 DLDATNN------------------------Q---ISS-------------------------------------LPEDM 156 (565)
T ss_pred hhhcccc------------------------c---ccc-------------------------------------CchHH
Confidence 6621000 0 000 00011
Q ss_pred CCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCC
Q 000568 760 KPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839 (1416)
Q Consensus 760 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 839 (1416)
..+..|..+.+.++....+|+..- .++.|++|+...|.+....|.++.+.+|+.|++..+. +..++
T Consensus 157 ~~~~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP----------- 222 (565)
T KOG0472|consen 157 VNLSKLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP----------- 222 (565)
T ss_pred HHHHHHHHhhccccchhhCCHHHH--HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-----------
Confidence 112233334444444444444332 1455666666655554444456666666666665432 11110
Q ss_pred CCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEE
Q 000568 840 FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFK 919 (1416)
Q Consensus 840 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~ 919 (1416)
+|+.+..|++|+++. ++++ .+|..
T Consensus 223 -------------------------ef~gcs~L~Elh~g~-N~i~-~lpae----------------------------- 246 (565)
T KOG0472|consen 223 -------------------------EFPGCSLLKELHVGE-NQIE-MLPAE----------------------------- 246 (565)
T ss_pred -------------------------CCCccHHHHHHHhcc-cHHH-hhHHH-----------------------------
Confidence 134455566666655 3444 33321
Q ss_pred EcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCccccccccCCCCcceEEEcc
Q 000568 920 IDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRS 999 (1416)
Q Consensus 920 l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 999 (1416)
....+++|..||+..|++ ++.|..++-+++|+.||+++
T Consensus 247 -----------------------------------------~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 247 -----------------------------------------HLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred -----------------------------------------Hhcccccceeeecccccc-ccCchHHHHhhhhhhhcccC
Confidence 111225788899999876 77899999999999999999
Q ss_pred CCCccccCCCCCCCCccEEeEccCCCCCcCchhhh-cCCCCCcCeeEE-ccCCCcccccCCCCCCCCceEeeecCCCccc
Q 000568 1000 CSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWM-CETNSSLEILNI-AGCSSLTYITGVQLPPSLKLLLIFDCDSIRT 1077 (1416)
Q Consensus 1000 n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l-~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~ 1077 (1416)
|.+..-.++.+++ .|+.|-+.+|++-+ +-..+. .+.-.-|++|.= ..|..+..-.++.- ..
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e---------------~~ 347 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE---------------TA 347 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccc---------------cc
Confidence 9887665677777 89999999998433 221111 000011222221 11121111111000 00
Q ss_pred ccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCC-CCCccEEEEecCCchhhhHHhhccCCc
Q 000568 1078 LTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNL-PQSLKFLDVWECPKLESIAERLNNNTS 1156 (1416)
Q Consensus 1078 l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l-~~~L~~L~L~~n~~~~~~~~~~~~l~~ 1156 (1416)
-+.+. ............+.+.+. ....+.+|..-|..- ..-.+..+++.|.+. ++|..+..+..
T Consensus 348 ~t~~~---~~~~~~~~~i~tkiL~~s-----------~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 348 MTLPS---ESFPDIYAIITTKILDVS-----------DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred CCCCC---Ccccchhhhhhhhhhccc-----------ccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000 000000000011111111 111122222111000 013677888888765 56777777777
Q ss_pred ccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccceeeeec
Q 000568 1157 LEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD 1236 (1416)
Q Consensus 1157 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~ 1236 (1416)
+.+.-+..|+..+.+|..+..+++|..|+++ |+.+.++|..++.+..|++|+++.|++. .+|..+..+..|+.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~-NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLS-NNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecc-cchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 7777666777777888888999999999998 6788889998888889999999999775 7788888888899998899
Q ss_pred CCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCC
Q 000568 1237 VLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQ 1294 (1416)
Q Consensus 1237 n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 1294 (1416)
|++..+.+..+.++ .+|+.|++.+|. +..+|+. ++++++|++|.+++|+.
T Consensus 491 nqi~~vd~~~l~nm-~nL~tLDL~nNd-lq~IPp~------LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNM-RNLTTLDLQNND-LQQIPPI------LGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccccChHHhhhh-hhcceeccCCCc-hhhCChh------hccccceeEEEecCCcc
Confidence 99999988888888 599999998865 4445543 89999999999999864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-26 Score=248.81 Aligned_cols=366 Identities=16% Similarity=0.123 Sum_probs=261.8
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCC-ccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSK-LRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++.-+.|++++|++...-+..|.++++|+++++..|.+ ..+|.++.... |+.|++.+|.+.+.-.+.. ..++.|+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEeeeccccccccHHHH--HhHhhhhh
Confidence 35667899999999888888899999999999998855 46887666554 9999999999776666665 67899999
Q ss_pred eEEccCCCcccccCCCCCC--CCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchh
Q 000568 1044 LNIAGCSSLTYITGVQLPP--SLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATL 1121 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~--~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~ 1121 (1416)
||++. +.+..++...+|. ++++|++. ++.++. ++.-.+.++.+|..+-.++|-...+
T Consensus 154 lDLSr-N~is~i~~~sfp~~~ni~~L~La-----------~N~It~---------l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 154 LDLSR-NLISEIPKPSFPAKVNIKKLNLA-----------SNRITT---------LETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred hhhhh-chhhcccCCCCCCCCCceEEeec-----------cccccc---------cccccccccchheeeecccCccccc
Confidence 99998 4455555545553 35555443 333332 3333456666777776677777777
Q ss_pred hccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC
Q 000568 1122 ESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP 1201 (1416)
Q Consensus 1122 ~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 1201 (1416)
|...|.++| .|+.|+|..|.+-..-...|..+++|+.|.|..|.+...-...|..+.++++|+|..|+....-....+.
T Consensus 213 p~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 777777787 8888888888776544556788888888888888877766677788888888888755443333334455
Q ss_pred CCCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCC
Q 000568 1202 CAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRF 1281 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l 1281 (1416)
+++|+.|+++.|.+...-++....+++|+.|+|++|+++.+.+..+..+ ..|+.|++++|. +..+.+. +|..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Ns-i~~l~e~-----af~~l 364 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNS-IDHLAEG-----AFVGL 364 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccc-hHHHHhh-----HHHHh
Confidence 7888888888888887777777778888888888888888888888777 488888888864 4444443 37888
Q ss_pred CCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCccccc-CccccCCcCcEEecCCCCCCCCCCC
Q 000568 1282 SSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSS-SIFYHQNLTKLKLCNCPKLKYFPEK 1360 (1416)
Q Consensus 1282 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~ 1360 (1416)
++|++|++++|.. ....++. ...+.-+++|+.|++.+ ++++++|. ++..+++|+.|+|.+|+ +.++-+.
T Consensus 365 ssL~~LdLr~N~l--s~~IEDa------a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~n 434 (873)
T KOG4194|consen 365 SSLHKLDLRSNEL--SWCIEDA------AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPN 434 (873)
T ss_pred hhhhhhcCcCCeE--EEEEecc------hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeeccc
Confidence 8888888887632 2211111 11223477888888888 68888875 55566888888888887 6666554
Q ss_pred CC-ccccceeeec
Q 000568 1361 GL-PASLLRLEIS 1372 (1416)
Q Consensus 1361 ~~-~~sL~~L~l~ 1372 (1416)
.+ +-.|++|.+.
T Consensus 435 AFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 435 AFEPMELKELVMN 447 (873)
T ss_pred ccccchhhhhhhc
Confidence 43 3467777654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.4e-27 Score=271.46 Aligned_cols=268 Identities=22% Similarity=0.222 Sum_probs=189.2
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
.+|+++++++|++ ..+|.++..+.+|+.|...+|.+. .+| .+....+|+.|.+..|. ++.+|... ..+.+|+.|
T Consensus 241 ~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhh-hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 5788999999887 456689999999999999998774 444 56667888888888888 55566544 568889999
Q ss_pred EEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcc
Q 000568 1045 NIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESL 1124 (1416)
Q Consensus 1045 ~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~ 1124 (1416)
++..+ ++..+|.. + +..+.. .++.+.. +.+.....+..
T Consensus 316 dL~~N-~L~~lp~~-~---l~v~~~----~l~~ln~---------------------------------s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 316 DLQSN-NLPSLPDN-F---LAVLNA----SLNTLNV---------------------------------SSNKLSTLPSY 353 (1081)
T ss_pred eehhc-cccccchH-H---HhhhhH----HHHHHhh---------------------------------hhccccccccc
Confidence 99883 33333320 0 000000 0000000 00000011110
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.-..+ +.|+.|++.+|.+++.....+.++++|+.|+|++|.+.......+.+++.|++|+|++ +.++.+|.....|+.
T Consensus 354 ~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 354 EENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGR 431 (1081)
T ss_pred cchhh-HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhh
Confidence 11122 3799999999999998888899999999999999997665556788999999999996 567788888888999
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCC-CCcceeEecCCCCCcccccccCCCCCCCCCCC
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLP-TNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSS 1283 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~ 1283 (1416)
|++|...+|.+. .+| .+..++.|+.+|+|.|.++.+.... .+| ++|++|+++||..+..-. ..+..+.+
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~p~LkyLdlSGN~~l~~d~------~~l~~l~~ 501 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPSPNLKYLDLSGNTRLVFDH------KTLKVLKS 501 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh--hCCCcccceeeccCCcccccch------hhhHHhhh
Confidence 999999999987 777 7889999999999999998876543 344 699999999998643211 12556666
Q ss_pred cceEEEecc
Q 000568 1284 LQQLRIRGR 1292 (1416)
Q Consensus 1284 L~~L~l~~~ 1292 (1416)
+..+++.-+
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 666666543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=3.7e-27 Score=247.34 Aligned_cols=485 Identities=24% Similarity=0.244 Sum_probs=287.6
Q ss_pred cceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcccCceEE
Q 000568 607 FTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVV 686 (1416)
Q Consensus 607 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 686 (1416)
|..|.+++|++..+-+.+.+|..|.+|++.+| .+..+|.+|+.+..++.|++++|. +.++|..++.+.+|..|....
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~- 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS- 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc-
Confidence 44688999999999888999999999999995 788999999999999999999998 999999999888887772100
Q ss_pred cCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcc
Q 000568 687 GNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLE 766 (1416)
Q Consensus 687 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 766 (1416)
.+ ++.+ .+.+..+..|+
T Consensus 124 -----------------------n~--------------------~~el--------------------~~~i~~~~~l~ 140 (565)
T KOG0472|consen 124 -----------------------NE--------------------LKEL--------------------PDSIGRLLDLE 140 (565)
T ss_pred -----------------------cc--------------------eeec--------------------CchHHHHhhhh
Confidence 00 0000 00111122344
Q ss_pred eEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEE
Q 000568 767 EFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETL 846 (1416)
Q Consensus 767 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L 846 (1416)
.+...+|....+|..++ .+.+|..|++.+|++....|..-.+..|+.|+...+ .++
T Consensus 141 dl~~~~N~i~slp~~~~--~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~--------------------- 196 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMV--NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLE--------------------- 196 (565)
T ss_pred hhhccccccccCchHHH--HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhh---------------------
Confidence 44445555555565554 255556666666555433333333444444443221 111
Q ss_pred eccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEcCCCCc
Q 000568 847 HFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKV 926 (1416)
Q Consensus 847 ~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~ 926 (1416)
..|++++.+.+|+.|++.. +++. .+|+
T Consensus 197 --------------tlP~~lg~l~~L~~LyL~~-Nki~-~lPe------------------------------------- 223 (565)
T KOG0472|consen 197 --------------TLPPELGGLESLELLYLRR-NKIR-FLPE------------------------------------- 223 (565)
T ss_pred --------------cCChhhcchhhhHHHHhhh-cccc-cCCC-------------------------------------
Confidence 1122344555555555555 3444 3332
Q ss_pred ceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCcccccc-ccCCCCcceEEEccCCCccc
Q 000568 927 VWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQS-LLNLSSLREIYIRSCSSLVS 1005 (1416)
Q Consensus 927 ~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~~~ 1005 (1416)
|.+|+ .|++|+++.|++ ..+|.. ..++++|..||+..|++...
T Consensus 224 --------------f~gcs---------------------~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 224 --------------FPGCS---------------------LLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred --------------CCccH---------------------HHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccC
Confidence 22222 344555555554 445544 34788888888888866543
Q ss_pred cCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCC----CCCCCCceEeeecCCCccccccc
Q 000568 1006 FPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGV----QLPPSLKLLLIFDCDSIRTLTVE 1081 (1416)
Q Consensus 1006 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~~~~L~~l~~~ 1081 (1416)
..++..+.+|..|++++|. ++.+|... +++ .|+.|.+.|+|--+ +... ....-||+| ++-.
T Consensus 268 Pde~clLrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyL--------rs~~-- 332 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYL--------RSKI-- 332 (565)
T ss_pred chHHHHhhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHH--------HHhh--
Confidence 3355667778888888877 45566655 566 67777777754211 1000 000001111 0000
Q ss_pred ccccccCCccccccccceEEecCCCCcccccccCCCcchhhcccc---CCCCCCccEEEEecCCchhhhHHhhccCC--c
Q 000568 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEV---GNLPQSLKFLDVWECPKLESIAERLNNNT--S 1156 (1416)
Q Consensus 1082 ~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~---~~l~~~L~~L~L~~n~~~~~~~~~~~~l~--~ 1156 (1416)
.|..+..--....-.++.++..+ ..+ -+.+.|++++-.++....+.|.... -
T Consensus 333 ----------------------~~dglS~se~~~e~~~t~~~~~~~~~~~~-i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 333 ----------------------KDDGLSQSEGGTETAMTLPSESFPDIYAI-ITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred ----------------------ccCCCCCCcccccccCCCCCCcccchhhh-hhhhhhcccccccccCCHHHHHHhhhcc
Confidence 00000000000000000011011 111 2678888888777654444333322 3
Q ss_pred ccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccceeeeec
Q 000568 1157 LEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD 1236 (1416)
Q Consensus 1157 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~ 1236 (1416)
....+++.|++. .+|..+..+..+.+.-+..++.+..+|.....+++|..|++++|.+. .+|..++.+..|+.|++++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 788999999955 46888887777777666656777666666666899999999988754 8899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCCCcCcCCC
Q 000568 1237 VLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLP 1316 (1416)
Q Consensus 1237 n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1316 (1416)
|++..+. .....+ ..|+.+ +.+++++..+++. ++.++.+|.+|++.+
T Consensus 468 NrFr~lP-~~~y~l-q~lEtl-las~nqi~~vd~~-----~l~nm~nL~tLDL~n------------------------- 514 (565)
T KOG0472|consen 468 NRFRMLP-ECLYEL-QTLETL-LASNNQIGSVDPS-----GLKNMRNLTTLDLQN------------------------- 514 (565)
T ss_pred cccccch-HHHhhH-HHHHHH-HhccccccccChH-----HhhhhhhcceeccCC-------------------------
Confidence 9776552 211111 233333 3344455555433 266666666666655
Q ss_pred CcccceeccccccCcccccCccccCCcCcEEecCCCCCC
Q 000568 1317 ATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLK 1355 (1416)
Q Consensus 1317 ~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 1355 (1416)
+.+..+|+.++++.+|++|++++|+ ++
T Consensus 515 -----------Ndlq~IPp~LgnmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 515 -----------NDLQQIPPILGNMTNLRHLELDGNP-FR 541 (565)
T ss_pred -----------CchhhCChhhccccceeEEEecCCc-cC
Confidence 4777888888888999999999988 55
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-24 Score=236.51 Aligned_cols=365 Identities=16% Similarity=0.132 Sum_probs=217.4
Q ss_pred cceEEEEcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHh--hhhcccCccEEEeecCCCCccccccccCCCC
Q 000568 914 ALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQ--LCDLSCKLEYLGLSYCQGLVTLPQSLLNLSS 991 (1416)
Q Consensus 914 ~L~~L~l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~--~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~ 991 (1416)
.-+.|+++++..-.+ ....+.++++|+.+.+..|..... +......|+.|+|.+|.+...-.+.+.-++.
T Consensus 79 ~t~~LdlsnNkl~~i--------d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI--------DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccccccC--------cHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 345577766543211 122467788888888877766533 2223456888888888877777777888888
Q ss_pred cceEEEccCCCccccC--CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEee
Q 000568 992 LREIYIRSCSSLVSFP--EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069 (1416)
Q Consensus 992 L~~L~L~~n~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 1069 (1416)
|+.|||+.|.+.. +| .+..-.++++|++++|.+...-...| .++.+|..|.++.+ .++.+|. . .+
T Consensus 151 lrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrN-rittLp~-----r----~F 217 (873)
T KOG4194|consen 151 LRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRN-RITTLPQ-----R----SF 217 (873)
T ss_pred hhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccC-cccccCH-----H----Hh
Confidence 8888888886553 33 34444578888888888655444444 67778888888873 2333321 1 12
Q ss_pred ecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHH
Q 000568 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAE 1149 (1416)
Q Consensus 1070 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~ 1149 (1416)
.+++.|+.+++..+++ .......|.++| +|+.|.+..|.+...-.+
T Consensus 218 k~L~~L~~LdLnrN~i---------------------------------rive~ltFqgL~-Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 218 KRLPKLESLDLNRNRI---------------------------------RIVEGLTFQGLP-SLQNLKLQRNDISKLDDG 263 (873)
T ss_pred hhcchhhhhhccccce---------------------------------eeehhhhhcCch-hhhhhhhhhcCcccccCc
Confidence 2334444444433333 333333445554 666666666666665556
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCL 1229 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L 1229 (1416)
.|..+.++++|+|+.|++...-..++.++++|+.|++++|..-..-+.++.-+++|++|+|++|++...-+..|..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 66666677777777766665555566666777777776443333323334445667777777776665555666666677
Q ss_pred ceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCC
Q 000568 1230 QHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGL 1309 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 1309 (1416)
+.|.|++|++..+....|.++ ++|+.|++++|...-.+-+ ....+.++++|+.|++.+| .+.++|.-.|
T Consensus 344 e~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~IED---aa~~f~gl~~LrkL~l~gN--qlk~I~krAf----- 412 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSWCIED---AAVAFNGLPSLRKLRLTGN--QLKSIPKRAF----- 412 (873)
T ss_pred hhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEEEEec---chhhhccchhhhheeecCc--eeeecchhhh-----
Confidence 777777776666666666666 3677777766553332222 1234666667777777664 4555555443
Q ss_pred CcCcCCCCcccceeccccccCcccccCccccCCcCcEEec
Q 000568 1310 GTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLC 1349 (1416)
Q Consensus 1310 ~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 1349 (1416)
.-+++|++|++.+ +-+.++....+....|++|-+.
T Consensus 413 ----sgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 413 ----SGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred ----ccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 2455666666666 4555554444443466666554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-24 Score=252.62 Aligned_cols=267 Identities=20% Similarity=0.181 Sum_probs=142.8
Q ss_pred CCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEe
Q 000568 989 LSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLL 1068 (1416)
Q Consensus 989 l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1068 (1416)
.++|+.|+.++|.+.+..+ ...+.+|+++++++|+ +..+|.+. ..+.+|+.|++.++. +..++. .
T Consensus 218 g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi--~~~~nle~l~~n~N~-l~~lp~-----r----- 282 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWI--GACANLEALNANHNR-LVALPL-----R----- 282 (1081)
T ss_pred CcchheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHH--HhcccceEecccchh-HHhhHH-----H-----
Confidence 3677888888887774333 3456788888888887 55667444 677888888877732 111111 0
Q ss_pred eecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhH
Q 000568 1069 IFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIA 1148 (1416)
Q Consensus 1069 i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~ 1148 (1416)
+. .. ++|+.|.+..|.+. .+|
T Consensus 283 ---------------------------------i~------------------------~~-~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 283 ---------------------------------IS------------------------RI-TSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred ---------------------------------Hh------------------------hh-hhHHHHHhhhhhhh-hCC
Confidence 00 00 24445555454332 334
Q ss_pred HhhccCCcccEEeeccCCCcccccccccCCCC-cceeeeccCCCcccccC-CCCCCCCcceEEEccccCCCcCcccccCc
Q 000568 1149 ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQ-LQRISIWCCGNLVSFSE-GGLPCAKLTRLEISECERLEALPRGLRNL 1226 (1416)
Q Consensus 1149 ~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~-L~~L~L~~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~p~~l~~l 1226 (1416)
.....+++|++|+|..|.+....+..+..+.. |..|+.+ ++.+...|. +....+.|+.|.+.+|.++...-..+.+.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 44555666666666666644433323332222 5555555 333333331 12224566777777777666554556666
Q ss_pred CccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCccccc
Q 000568 1227 TCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIG 1306 (1416)
Q Consensus 1227 ~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 1306 (1416)
..|+.|+|++|++..+....+.+++ .|+.|+++|| .++.+++. +..+..|++|...+| .+.+||+.
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGN-kL~~Lp~t------va~~~~L~tL~ahsN--~l~~fPe~---- 448 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGN-KLTTLPDT------VANLGRLHTLRAHSN--QLLSFPEL---- 448 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchH-HhHHHhcccc-hhhhhhHH------HHhhhhhHHHhhcCC--ceeechhh----
Confidence 7777777777766665555555553 6666666664 34444433 455556666655543 34444422
Q ss_pred CCCCcCcCCCCcccceeccccccCccc--ccCccccCCcCcEEecCCCC
Q 000568 1307 LGLGTTLPLPATLTYLVIADLPNLERL--SSSIFYHQNLTKLKLCNCPK 1353 (1416)
Q Consensus 1307 ~~~~~~~~~~~sL~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~~~ 1353 (1416)
.+++.|+.++++. |+|+.+ |...-+ |+|++|+++||..
T Consensus 449 -------~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 -------AQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred -------hhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 2444555555553 444432 211111 5566666666553
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.2e-24 Score=234.68 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=259.0
Q ss_pred ccccceeeccCCCcc--ccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCccc
Q 000568 604 LRVFTVLNLSRTNIR--NLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL 681 (1416)
Q Consensus 604 L~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 681 (1416)
|+..+-.|+++|+++ .+|.++..++.++.|.|.. +.+..+|+.++.|.+|+||.+++|. +..+-.+++.|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 445566788888887 6798899999999999988 6888999999999999999999988 77776666677777666
Q ss_pred CceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCC
Q 000568 682 CNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKP 761 (1416)
Q Consensus 682 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 761 (1416)
.+.-+++.+.. .+..+-.+..|+.|+|+.+. ..++...+..
T Consensus 84 ------------------------~~R~N~LKnsG-----iP~diF~l~dLt~lDLShNq----------L~EvP~~LE~ 124 (1255)
T KOG0444|consen 84 ------------------------IVRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQ----------LREVPTNLEY 124 (1255)
T ss_pred ------------------------hhhccccccCC-----CCchhcccccceeeecchhh----------hhhcchhhhh
Confidence 12222222211 12334556667777775221 1223445556
Q ss_pred CCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCC
Q 000568 762 HQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFP 841 (1416)
Q Consensus 762 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~ 841 (1416)
.+++-.|+++.|.+..+|..+.- .+..|-.|+|++|.+....|....|.+|++|.|++++... .
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-f-------------- 188 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-F-------------- 188 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-H--------------
Confidence 67777888888888888876543 4667777888888775555567777788888887754110 0
Q ss_pred CccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEc
Q 000568 842 CLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKID 921 (1416)
Q Consensus 842 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 921 (1416)
.+. ++.++.+|+.|++++.+.-...+|..+..
T Consensus 189 -----QLr---------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~---------------------------- 220 (1255)
T KOG0444|consen 189 -----QLR---------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDD---------------------------- 220 (1255)
T ss_pred -----HHh---------------cCccchhhhhhhcccccchhhcCCCchhh----------------------------
Confidence 000 12345566666666632222233322110
Q ss_pred CCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCccccccccCCCCcceEEEccCC
Q 000568 922 GCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCS 1001 (1416)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 1001 (1416)
+.+|..+++|.|.+ ..+|.++-.+++|+.|+||+|.
T Consensus 221 -------------------------------------------l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 221 -------------------------------------------LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred -------------------------------------------hhhhhhccccccCC-CcchHHHhhhhhhheeccCcCc
Confidence 14777888888866 6778889999999999999998
Q ss_pred CccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEeeecCCCccccccc
Q 000568 1002 SLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVE 1081 (1416)
Q Consensus 1002 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~ 1081 (1416)
+...--....-.+|++|+++.|+ +..+|... ..++.|+.|.+.+ +.+....+|+.+.+|
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~av--cKL~kL~kLy~n~----NkL~FeGiPSGIGKL-------------- 315 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQ-LTVLPDAV--CKLTKLTKLYANN----NKLTFEGIPSGIGKL-------------- 315 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccch-hccchHHH--hhhHHHHHHHhcc----CcccccCCccchhhh--------------
Confidence 77544445566788999999988 67788877 6888899988887 333333455443221
Q ss_pred ccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEe
Q 000568 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVID 1161 (1416)
Q Consensus 1082 ~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1161 (1416)
..|+.+..++| .++.+|+.++.|..|+.|.
T Consensus 316 -------------------------------------------------~~Levf~aanN-~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 316 -------------------------------------------------IQLEVFHAANN-KLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred -------------------------------------------------hhhHHHHhhcc-ccccCchhhhhhHHHHHhc
Confidence 14555555544 4567888899999999999
Q ss_pred eccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEc
Q 000568 1162 IGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211 (1416)
Q Consensus 1162 Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 1211 (1416)
|++|.+.+ +|+.++-++.|+.|++..|+++.--|...-.-.+|+.-+|.
T Consensus 346 L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 346 LDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99998665 57888899999999999888876544322112355554443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2e-24 Score=237.94 Aligned_cols=342 Identities=19% Similarity=0.212 Sum_probs=261.7
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCC-cCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALK-SLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~ 1043 (1416)
+++++.|.|...++ ..+|..++.+.+|+.|.+++|++.+.......+|.|+.+.+.+|+... -+|..+ -.+.-|..
T Consensus 31 Mt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di--F~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI--FRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh--ccccccee
Confidence 47889999988654 778999999999999999999988877788889999999999988643 367766 37888999
Q ss_pred eEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhc
Q 000568 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~ 1123 (1416)
|++|++. +. .+|..|+ .-.++..+..++|...++|.
T Consensus 108 lDLShNq-L~-----EvP~~LE--------------------------------------~AKn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 108 LDLSHNQ-LR-----EVPTNLE--------------------------------------YAKNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred eecchhh-hh-----hcchhhh--------------------------------------hhcCcEEEEcccCccccCCc
Confidence 9999832 22 3343332 11223333334444445555
Q ss_pred cccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCC-cccccCCCCCC
Q 000568 1124 LEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGN-LVSFSEGGLPC 1202 (1416)
Q Consensus 1124 ~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~-l~~~~~~~~~~ 1202 (1416)
.-+.++ ..|-.|+|++|++ +.+|..+..+..|++|+|++|++.-.--..+.++++|++|++++.+. +..+|+..-.+
T Consensus 144 ~lfinL-tDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 144 SLFINL-TDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hHHHhh-HhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence 444444 3788899998865 46777889999999999999987654334556778889999986544 45677777778
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFS 1282 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~ 1282 (1416)
.+|..+|++.|.+. .+|+.+.++++|+.|+||+|.|+.+.. ....+ .+|++|++++|+ ++.+|+- +..|+
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~~lEtLNlSrNQ-Lt~LP~a------vcKL~ 291 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEW-ENLETLNLSRNQ-LTVLPDA------VCKLT 291 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHH-hhhhhhccccch-hccchHH------HhhhH
Confidence 89999999999876 778999999999999999999887743 23344 489999999964 6666553 88899
Q ss_pred CcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCCC-C
Q 000568 1283 SLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEK-G 1361 (1416)
Q Consensus 1283 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~ 1361 (1416)
+|+.|.+.+|....+.+|... ..+..|+.+..++ ++++-.|++++.++.|++|.|+.|+ +-.+|+. .
T Consensus 292 kL~kLy~n~NkL~FeGiPSGI----------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIH 359 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGI----------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIH 359 (1255)
T ss_pred HHHHHHhccCcccccCCccch----------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhh
Confidence 999999999877777788765 5778888888888 7899999999999999999999887 5667764 5
Q ss_pred CccccceeeecCChhh
Q 000568 1362 LPASLLRLEISGCPLI 1377 (1416)
Q Consensus 1362 ~~~sL~~L~l~~cp~l 1377 (1416)
+.+-|+.||+..||.+
T Consensus 360 lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNL 375 (1255)
T ss_pred hcCCcceeeccCCcCc
Confidence 6789999999999875
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.4e-20 Score=247.70 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=85.0
Q ss_pred cCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcccee
Q 000568 1153 NNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHL 1232 (1416)
Q Consensus 1153 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 1232 (1416)
..++|+.|++++|.....+|..++++++|+.|+|++|+.+..+|... .+++|+.|++++|.....+|.. .++|+.|
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence 34677777777777777777777777777777777777777777554 4567777777777766555543 3567777
Q ss_pred eeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEecc
Q 000568 1233 TIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1233 ~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1292 (1416)
++++|.+..+ |.++..++ +|+.|++++|+++..++.. ...+++|+.+++++|
T Consensus 852 ~Ls~n~i~~i-P~si~~l~-~L~~L~L~~C~~L~~l~~~------~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEV-PWWIEKFS-NLSFLDMNGCNNLQRVSLN------ISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccC-hHHHhcCC-CCCEEECCCCCCcCccCcc------cccccCCCeeecCCC
Confidence 7777766654 44555563 7777777777776665542 455566666666554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.2e-14 Score=175.30 Aligned_cols=256 Identities=24% Similarity=0.287 Sum_probs=140.3
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
..-..|+++.|.+. .+|..+. ++|+.|++++|++. .+|. .+++|++|++++|.+ +.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N~L-tsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQL-TSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCCcc-CcccCc-----ccccceee
Confidence 35678899999775 6777665 48999999998765 4664 468899999988874 455642 36788888
Q ss_pred EccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccc
Q 000568 1046 IAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLE 1125 (1416)
Q Consensus 1046 l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~ 1125 (1416)
+++|. ++.++. +|.
T Consensus 269 Ls~N~-L~~Lp~--lp~--------------------------------------------------------------- 282 (788)
T PRK15387 269 IFSNP-LTHLPA--LPS--------------------------------------------------------------- 282 (788)
T ss_pred ccCCc-hhhhhh--chh---------------------------------------------------------------
Confidence 88753 333331 222
Q ss_pred cCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCc
Q 000568 1126 VGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKL 1205 (1416)
Q Consensus 1126 ~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L 1205 (1416)
+|+.|++++|.+.. +|. .+++|+.|++++|.+.+ +|.. ..+|+.|++++ +.+..+|. .+ .+|
T Consensus 283 ------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~-N~L~~LP~--lp-~~L 344 (788)
T PRK15387 283 ------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN-NQLTSLPT--LP-SGL 344 (788)
T ss_pred ------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccccccc-Cccccccc--cc-ccc
Confidence 34444444443332 111 12344555555544433 1211 12344444443 22333332 11 345
Q ss_pred ceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1206 TRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1206 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
+.|+|++|++. .+|.. .++|+.|++++|.+..+. .+|.+|+.|++++|. ++.++.. .++|+
T Consensus 345 q~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP-----~l~~~L~~LdLs~N~-Lt~LP~l---------~s~L~ 405 (788)
T PRK15387 345 QELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNR-LTSLPVL---------PSELK 405 (788)
T ss_pred ceEecCCCccC-CCCCC---CcccceehhhccccccCc-----ccccccceEEecCCc-ccCCCCc---------ccCCC
Confidence 55555555544 23321 234455555555544321 122355555555543 2222211 13455
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 1352 (1416)
.|++++|. +..+|. .+.+|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 406 ~LdLS~N~--LssIP~-------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSGNR--LTSLPM-------------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccCCc--CCCCCc-------------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 56666542 333442 234567777776 5788888888888889999998887
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=4.7e-16 Score=164.59 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=62.8
Q ss_pred eeeccCCCccccCcc-ccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCC-cccccCCccc
Q 000568 609 VLNLSRTNIRNLPES-ITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLR-FGKLTCLQTL 681 (1416)
Q Consensus 609 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 681 (1416)
.++|..|+|+.||+. |+.|++||.|||++|.+...-|..|..|.+|-.|-+.+++.|+.+|.+ |++|..||.|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 577888999999765 889999999999998777777888999999999888885559999987 8999999888
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.7e-13 Score=165.94 Aligned_cols=256 Identities=25% Similarity=0.321 Sum_probs=184.7
Q ss_pred CCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEee
Q 000568 990 SSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069 (1416)
Q Consensus 990 ~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 1069 (1416)
..-..|++++|.+. .+|. ..+++|+.|++.+|+ ++.+|. .+++|+.|++++| .++.+|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP------------- 258 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGN-QLTSLP------------- 258 (788)
T ss_pred CCCcEEEcCCCCCC-cCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCC-ccCccc-------------
Confidence 44667888888665 5664 234678889988887 444664 2467888888774 232221
Q ss_pred ecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHH
Q 000568 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAE 1149 (1416)
Q Consensus 1070 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~ 1149 (1416)
.+|++|+.|++++|.+.. +|.
T Consensus 259 ----------------------------------------------------------~lp~sL~~L~Ls~N~L~~-Lp~ 279 (788)
T PRK15387 259 ----------------------------------------------------------VLPPGLLELSIFSNPLTH-LPA 279 (788)
T ss_pred ----------------------------------------------------------CcccccceeeccCCchhh-hhh
Confidence 112478899999998664 443
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCL 1229 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L 1229 (1416)
..++|+.|++++|.+.. +|. .+++|+.|++++| .+..+|. .+ .+|+.|++++|.+. .+|.. .++|
T Consensus 280 ---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N-~L~~Lp~--lp-~~L~~L~Ls~N~L~-~LP~l---p~~L 344 (788)
T PRK15387 280 ---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNNQLT-SLPTL---PSGL 344 (788)
T ss_pred ---chhhcCEEECcCCcccc-ccc---cccccceeECCCC-ccccCCC--Cc-ccccccccccCccc-ccccc---cccc
Confidence 23678999999998765 443 3578999999965 5666664 22 57999999999987 46542 2589
Q ss_pred ceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCC
Q 000568 1230 QHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGL 1309 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 1309 (1416)
+.|++++|.+..+.+ +|.+|+.|++++|. +..++.. ..+|+.|++++|. +..+|.
T Consensus 345 q~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~-L~~LP~l---------~~~L~~LdLs~N~--Lt~LP~-------- 399 (788)
T PRK15387 345 QELSVSDNQLASLPT-----LPSELYKLWAYNNR-LTSLPAL---------PSGLKELIVSGNR--LTSLPV-------- 399 (788)
T ss_pred ceEecCCCccCCCCC-----CCcccceehhhccc-cccCccc---------ccccceEEecCCc--ccCCCC--------
Confidence 999999999987532 45799999999865 4455431 2579999999873 445553
Q ss_pred CcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCCC-CCccccceeeecCChh
Q 000568 1310 GTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEK-GLPASLLRLEISGCPL 1376 (1416)
Q Consensus 1310 ~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~sL~~L~l~~cp~ 1376 (1416)
.+++|+.|++++ +.++.+|.. ..+|+.|++++|. ++.+|.. .-.++|+.|++++||.
T Consensus 400 -----l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 400 -----LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -----cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 457899999999 578988853 3579999999987 8999874 3357999999999985
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=6.9e-13 Score=163.87 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=35.7
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
+.|+.|+|++|++. .+|..+. ++|++|++++|.+. .+|. ..+++|+.|++++|.+. .+|..+ .++|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINRIT-ELPERL----PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCccC-cCChhH----hCCCCEEE
Confidence 35556666665543 3443332 35666666655433 3332 22345566666665532 444433 13455555
Q ss_pred Ecc
Q 000568 1046 IAG 1048 (1416)
Q Consensus 1046 l~~ 1048 (1416)
+++
T Consensus 269 Ls~ 271 (754)
T PRK15370 269 LFH 271 (754)
T ss_pred CcC
Confidence 554
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=5.5e-11 Score=158.83 Aligned_cols=292 Identities=15% Similarity=0.195 Sum_probs=180.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 268 (1416)
..+|-|..-.+.+. .. ...+++.|.|++|.||||++.+.... ++.++|+++.. +.+...+...+
T Consensus 14 ~~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566665444442 21 24689999999999999999988752 23689999864 44666676777
Q ss_pred HHHhcCCCCC-------------CCCHHHHHHHHHHHhc--cccEEEEeccccccChhhHhhhcccc-ccCCCCcEEEEE
Q 000568 269 LRCITKQTID-------------DSDLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVDMSRPL-EAGAPGSKIIVT 332 (1416)
Q Consensus 269 l~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~iivT 332 (1416)
+..+...... ..+...+...+...+. +.+++|||||+...+..........+ .....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7766421110 0122333333333332 67899999999665433333333333 333456788899
Q ss_pred ccchH-H--HHhhCCCCeeeCC----CCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhcc
Q 000568 333 TRNQE-V--VAIMGTAPAYQLK----RLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG 405 (1416)
Q Consensus 333 tR~~~-v--~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~ 405 (1416)
||... . ..........++. +|+.+|+.++|........ + .+...+|++.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----E---AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----C---HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99842 1 1111112345555 9999999999987653221 1 245567999999999999999887754
Q ss_pred CCCcchHHHHHhhcccCCCC-CccCchhHHHH-HHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhh
Q 000568 406 KHGPSDWEDVLNSNIWDLPE-DRCGILPALRV-SYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDE 483 (1416)
Q Consensus 406 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 483 (1416)
..... .... +.+.. ....+...+.- .++.||++.+..+...|+++ .++.+.+-. +...
T Consensus 232 ~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~----- 291 (903)
T PRK04841 232 NNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE----- 291 (903)
T ss_pred CCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC-----
Confidence 42110 0111 11111 11235554433 48899999999999999986 344332221 1111
Q ss_pred HHHHHHHHHHHHHHhCCcccc-ccCCCCceEehHHHHHHHHHhc
Q 000568 484 EKEELGHQFFQELCSRSFFEK-SSNDTSKFVMHDLVNDLARWAA 526 (1416)
Q Consensus 484 ~~e~~~~~~~~~L~~~sll~~-~~~~~~~~~mHdlv~~~~~~~~ 526 (1416)
+.+...+++|.+++++.. .+++..+|+.|++++++++...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 113567999999999754 3444568999999999998765
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=2e-13 Score=144.94 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=55.5
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++.-..|+|..|++....+..|+.+++|+.|+|++|.+...-| .+..+.+|..|-+.+++.++.+|...+ ..+.+|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHHH
Confidence 4566777777777766666677777777777777777665444 456666776666666555666666544 56666666
Q ss_pred eEEcc
Q 000568 1044 LNIAG 1048 (1416)
Q Consensus 1044 L~l~~ 1048 (1416)
|.+.-
T Consensus 145 LllNa 149 (498)
T KOG4237|consen 145 LLLNA 149 (498)
T ss_pred HhcCh
Confidence 66654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=7e-14 Score=130.49 Aligned_cols=168 Identities=30% Similarity=0.416 Sum_probs=125.7
Q ss_pred cCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCc
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQ 679 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 679 (1416)
.+-.+.....|-||+|.++.+|+.|..|.+|++|++++| +++++|.+|+.|++|++|+++-|. +..+|.+||.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 344455556788999999999999999999999999985 899999999999999999999887 999999999999998
Q ss_pred ccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccC
Q 000568 680 TLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDML 759 (1416)
Q Consensus 680 ~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 759 (1416)
.| .+...++..
T Consensus 106 vl------------------------dltynnl~e--------------------------------------------- 116 (264)
T KOG0617|consen 106 VL------------------------DLTYNNLNE--------------------------------------------- 116 (264)
T ss_pred hh------------------------hcccccccc---------------------------------------------
Confidence 88 222222211
Q ss_pred CCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCC
Q 000568 760 KPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839 (1416)
Q Consensus 760 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 839 (1416)
..+|.-++ .+..|+.|.|++|.+.-..|.++++.+|+.|.+..+..++
T Consensus 117 ----------------~~lpgnff--~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-------------- 164 (264)
T KOG0617|consen 117 ----------------NSLPGNFF--YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-------------- 164 (264)
T ss_pred ----------------ccCCcchh--HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--------------
Confidence 11233232 2566777888888775555578888888888887754221
Q ss_pred CCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCc
Q 000568 840 FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPAL 894 (1416)
Q Consensus 840 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L 894 (1416)
.|.+++.+..|++|++.+ +.+. .+|..+.+|
T Consensus 165 ----------------------lpkeig~lt~lrelhiqg-nrl~-vlppel~~l 195 (264)
T KOG0617|consen 165 ----------------------LPKEIGDLTRLRELHIQG-NRLT-VLPPELANL 195 (264)
T ss_pred ----------------------CcHHHHHHHHHHHHhccc-ceee-ecChhhhhh
Confidence 122357788889999988 6787 777665554
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=3.8e-12 Score=157.36 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=23.3
Q ss_pred CccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCccccc
Q 000568 1014 KLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYIT 1056 (1416)
Q Consensus 1014 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 1056 (1416)
+...|+++++. +..+|..+ .++|+.|++++| .++.+|
T Consensus 179 ~~~~L~L~~~~-LtsLP~~I----p~~L~~L~Ls~N-~LtsLP 215 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACI----PEQITTLILDNN-ELKSLP 215 (754)
T ss_pred CceEEEeCCCC-cCcCCccc----ccCCcEEEecCC-CCCcCC
Confidence 45678888876 44566543 356888888774 344444
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=9e-10 Score=131.13 Aligned_cols=301 Identities=14% Similarity=0.094 Sum_probs=176.8
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+..++||++++++|...+...- .....+.+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 35679999999999999985432 1223456789999999999999999986433322234567777777778889999
Q ss_pred HHHHhcCCCC--CCCCHHHHHHHHHHHhc--cccEEEEeccccccC----hhhHhhhccccccCCCCcE--EEEEccchH
Q 000568 268 ILRCITKQTI--DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN----YNDWVDMSRPLEAGAPGSK--IIVTTRNQE 337 (1416)
Q Consensus 268 il~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--iivTtR~~~ 337 (1416)
++.++..... ...+.+++...+.+.+. ++..+||||+++.-. .+.+..+...... ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9999876321 23356677777777775 446899999997642 1223333322221 12333 566666543
Q ss_pred HHHhhC-------CCCeeeCCCCChhhHHHHHHHhhcCC--CCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh--cc-
Q 000568 338 VVAIMG-------TAPAYQLKRLSTDDCLSVFTQHSLDS--RDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL--RG- 405 (1416)
Q Consensus 338 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l--~~- 405 (1416)
+..... ....+.+++++.++..+++..++... ...-.++.++.+++......|..+.|+.++-.+. ..
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12468999999999999998876321 1112223334444444444566778877764432 11
Q ss_pred --C--CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHHHHHhHhccCCC--CcccCHHHHHHH--HHHcCCCC
Q 000568 406 --K--HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPK--DYEFEEEEIILL--WIAEGFLD 477 (1416)
Q Consensus 406 --~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~~--w~a~g~i~ 477 (1416)
. -+.++...+++.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1234455444432 1123455688999998887765543221 123444444432 23322211
Q ss_pred CCchhhHHHHHHHHHHHHHHhCCccccc
Q 000568 478 HEDRDEEKEELGHQFFQELCSRSFFEKS 505 (1416)
Q Consensus 478 ~~~~~~~~e~~~~~~~~~L~~~sll~~~ 505 (1416)
..- + ......|++.|...++|...
T Consensus 335 ~~~---~-~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPR---T-HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcC---c-HHHHHHHHHHHHhcCCeEEE
Confidence 110 1 12245688999999998753
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=2.9e-13 Score=126.44 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=99.6
Q ss_pred ccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccce
Q 000568 1152 NNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQH 1231 (1416)
Q Consensus 1152 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 1231 (1416)
.++...+.|.+|+|.+.. +|..+..+.+|+.|+++ |+.+..+|.....+++|+.|+++-|++. .+|..|+++|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~-nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcc-cchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 345556666677776443 34456677777777776 5666677777666777777777766654 56777777777777
Q ss_pred eeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCCCc
Q 000568 1232 LTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGT 1311 (1416)
Q Consensus 1232 L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 1311 (1416)
||+++|++.... +| +.|-.+..|+.|.+++| ..+.+|.+.
T Consensus 107 ldltynnl~e~~------lp------------------------gnff~m~tlralyl~dn--dfe~lp~dv-------- 146 (264)
T KOG0617|consen 107 LDLTYNNLNENS------LP------------------------GNFFYMTTLRALYLGDN--DFEILPPDV-------- 146 (264)
T ss_pred hhcccccccccc------CC------------------------cchhHHHHHHHHHhcCC--CcccCChhh--------
Confidence 777777554321 11 11333334444444443 223333332
Q ss_pred CcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1312 TLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1312 ~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
..+++|+.|.+.+ +.+-++|..++.+..|++|++.+|+ ++.+|+
T Consensus 147 --g~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 147 --GKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred --hhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 2444555555554 5777888888888999999999987 777765
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=2.2e-12 Score=149.62 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCcceEEEccccCCCc----CcccccCcCccceeeeecCCCCC
Q 000568 1203 AKLTRLEISECERLEA----LPRGLRNLTCLQHLTIGDVLSPE 1241 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~ 1241 (1416)
++|++|++++|.+... ++..+..+++|++|++++|.+.+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 3555555555554322 22334445566666666665543
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.3e-08 Score=119.93 Aligned_cols=301 Identities=12% Similarity=0.062 Sum_probs=172.2
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-ccc---CcEEEEEecCCcCHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-DHF---DLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 264 (1416)
+..++||++++++|..++...-. +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34799999999999999864221 2234678999999999999999999753211 111 13567887777777889
Q ss_pred HHHHHHHhc---CCCC-CCCCHHHHHHHHHHHhc--cccEEEEeccccccC---hhhHhhhcccc-ccCC--CCcEEEEE
Q 000568 265 TKTILRCIT---KQTI-DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN---YNDWVDMSRPL-EAGA--PGSKIIVT 332 (1416)
Q Consensus 265 ~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~iivT 332 (1416)
+..++.++. .... ...+..+....+.+.+. +++++||||+++.-. ......+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 12244555556666553 567899999997652 11122222211 1111 23344555
Q ss_pred ccchHHHHhhC-------CCCeeeCCCCChhhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHhcCCChHHH-HHHHHHh
Q 000568 333 TRNQEVVAIMG-------TAPAYQLKRLSTDDCLSVFTQHSLD-SRDFSSNKSLEEIGKKIVIKCNGLPLAA-KTLGGLL 403 (1416)
Q Consensus 333 tR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~glPLai-~~~~~~l 403 (1416)
+........+. ....+.+++++.++..+++..++.. .......++..+...+++....|.|-.+ .++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54433221111 1246889999999999999988631 1111223444455556777778888443 3322211
Q ss_pred --c--c-C--CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHHHHHhHhccC--CCCcccCHHHHHHHH--HH
Q 000568 404 --R--G-K--HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLL--PKDYEFEEEEIILLW--IA 472 (1416)
Q Consensus 404 --~--~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w--~a 472 (1416)
. . . -+.++.+.+.+.. -.....-++..||.+.|..+..+... .++..+....+...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 1 1233333333321 11234456789999988766555421 133445666665533 12
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHhCCccccc
Q 000568 473 EGFLDHEDRDEEKEELGHQFFQELCSRSFFEKS 505 (1416)
Q Consensus 473 ~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~ 505 (1416)
+.+-.. ...+.....++..|...|++...
T Consensus 322 ~~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 211111 11224466789999999999874
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=3.6e-11 Score=139.53 Aligned_cols=235 Identities=18% Similarity=0.102 Sum_probs=127.7
Q ss_pred cCccEEEeecCCCCc----cccccccCCCCcceEEEccCCCcc------ccC-CCCCCCCccEEeEccCCCCCcCchhhh
Q 000568 966 CKLEYLGLSYCQGLV----TLPQSLLNLSSLREIYIRSCSSLV------SFP-EVALPSKLRLITIWDCEALKSLPEAWM 1034 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~------~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1034 (1416)
.+|+.|++++|.+.. .++..+...++|++|+++++.... .++ .+..+++|+.|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 458888888887643 244556677778888888775541 111 233466777777777776544433321
Q ss_pred --cCCCCCcCeeEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCccccc
Q 000568 1035 --CETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLF 1112 (1416)
Q Consensus 1035 --~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~ 1112 (1416)
... ++|+.|++++|..-. .. .+
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~-~~---~~--------------------------------------------------- 126 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGD-RG---LR--------------------------------------------------- 126 (319)
T ss_pred HHhcc-CcccEEEeeCCccch-HH---HH---------------------------------------------------
Confidence 012 347777777653110 00 00
Q ss_pred ccCCCcchhhccccCCCCCCccEEEEecCCchh----hhHHhhccCCcccEEeeccCCCccc----ccccccCCCCccee
Q 000568 1113 SKNGLPATLESLEVGNLPQSLKFLDVWECPKLE----SIAERLNNNTSLEVIDIGNCENLKI----LPSGLHNLCQLQRI 1184 (1416)
Q Consensus 1113 ~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L 1184 (1416)
.+. ..+..++++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+. ++..+..+++|+.|
T Consensus 127 -------~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 198 (319)
T cd00116 127 -------LLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198 (319)
T ss_pred -------HHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEE
Confidence 000 0111222367777777777662 3344566667777777777776531 22334455677777
Q ss_pred eeccCCCc----ccccCCCCCCCCcceEEEccccCCCcCccccc-----CcCccceeeeecCCCCCCCCC----CCCCCC
Q 000568 1185 SIWCCGNL----VSFSEGGLPCAKLTRLEISECERLEALPRGLR-----NLTCLQHLTIGDVLSPERDPE----DEDRLP 1251 (1416)
Q Consensus 1185 ~L~~~~~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~-----~l~~L~~L~ls~n~~~~~~~~----~~~~l~ 1251 (1416)
++++|... ..+......+++|++|++++|.+.......+. ..+.|++|++++|.+++.... .+..+
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~- 277 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK- 277 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-
Confidence 77766432 11222222356788888888776642211111 236778888888766532111 12223
Q ss_pred CCcceeEecCCCCC
Q 000568 1252 TNLHSLNIDNMKSW 1265 (1416)
Q Consensus 1252 ~~L~~L~l~~~~~l 1265 (1416)
++|+.+++++|..-
T Consensus 278 ~~L~~l~l~~N~l~ 291 (319)
T cd00116 278 ESLLELDLRGNKFG 291 (319)
T ss_pred CCccEEECCCCCCc
Confidence 36777777776543
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=1.1e-08 Score=114.85 Aligned_cols=182 Identities=19% Similarity=0.133 Sum_probs=113.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ---- 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~---- 292 (1416)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..+...++.... ..+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999854321 11 12233 23345677888888888865432 22333333333332
Q ss_pred -hccccEEEEeccccccChhhHhhhccccc---cCCCCcEEEEEccchHHHHhhC----------CCCeeeCCCCChhhH
Q 000568 293 -LSRKKFLLVLDDVWNENYNDWVDMSRPLE---AGAPGSKIIVTTRNQEVVAIMG----------TAPAYQLKRLSTDDC 358 (1416)
Q Consensus 293 -l~~kr~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 358 (1416)
..+++.+||+||+|......++.+..... .......|++|.... ....+. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 25788999999998876555665543221 112223445555432 221111 124578999999999
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 359 LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 359 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
.+++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111111124677889999999999999998876
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.7e-10 Score=145.22 Aligned_cols=235 Identities=22% Similarity=0.232 Sum_probs=136.2
Q ss_pred ccceeeccCCC--ccccCcc-ccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcccC
Q 000568 606 VFTVLNLSRTN--IRNLPES-ITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLC 682 (1416)
Q Consensus 606 ~L~~L~Ls~~~--i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 682 (1416)
.|+.|-+.+|. +..++.. |..++.|++|||++|..+.++|..|+.|.+||+|+++++. +..+|.++++|+.|++|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheec
Confidence 57777777775 6777655 7779999999999999999999999999999999999998 999999999999999994
Q ss_pred ceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCC
Q 000568 683 NFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPH 762 (1416)
Q Consensus 683 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 762 (1416)
....+..... ...+..+.+|+.|.+.+... ......+..+..+
T Consensus 625 l~~~~~l~~~------------------------------~~i~~~L~~Lr~L~l~~s~~-------~~~~~~l~el~~L 667 (889)
T KOG4658|consen 625 LEVTGRLESI------------------------------PGILLELQSLRVLRLPRSAL-------SNDKLLLKELENL 667 (889)
T ss_pred cccccccccc------------------------------cchhhhcccccEEEeecccc-------ccchhhHHhhhcc
Confidence 4333221100 01122345555555543220 1111223334444
Q ss_pred CCcceEEEeeeCCCCCCcCcCCCCCCCc----cEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCC
Q 000568 763 QNLEEFCINGYRGTKFPIWLGDSSLSKL----VTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPI 838 (1416)
Q Consensus 763 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L----~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 838 (1416)
++|+.+.+..... .+-.-+. .+..| +.+.+.+|......+.++.+.+|+.|.+.+|...+........ ....
T Consensus 668 e~L~~ls~~~~s~-~~~e~l~--~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-~~~~ 743 (889)
T KOG4658|consen 668 EHLENLSITISSV-LLLEDLL--GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-LIVL 743 (889)
T ss_pred cchhhheeecchh-HhHhhhh--hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-cchh
Confidence 5555555433222 0000000 11222 2333334444555667788888888888887654332211100 0011
Q ss_pred -CCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCC
Q 000568 839 -PFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP 888 (1416)
Q Consensus 839 -~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p 888 (1416)
.|+++..+.+..+....... .....|+|+.|.+..|+.+...+|
T Consensus 744 ~~f~~l~~~~~~~~~~~r~l~------~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLRDLT------WLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhHHHHHHHHhhccccccccc------hhhccCcccEEEEecccccccCCC
Confidence 14555555555443332211 123457777777777776664444
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=1.2e-09 Score=120.23 Aligned_cols=195 Identities=19% Similarity=0.194 Sum_probs=100.0
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH---
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI--- 268 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 268 (1416)
|+||+.|+++|.+++... ..+.+.|+|+.|+|||+|++++.+..+.. .+ .++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhh-HHHHHHHH
Confidence 789999999999998654 24789999999999999999999844211 12 34444443333221 11111
Q ss_pred -----------HHHhcCCCC------CCCCHHHHHHHHHHHhc--cccEEEEeccccccC------hhhHhhhcccccc-
Q 000568 269 -----------LRCITKQTI------DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN------YNDWVDMSRPLEA- 322 (1416)
Q Consensus 269 -----------l~~l~~~~~------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~~~l~~- 322 (1416)
...+..... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 01122222333333332 346999999996653 0111122222222
Q ss_pred -CCCCcEEEEEccchHHHHh--------hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 323 -GAPGSKIIVTTRNQEVVAI--------MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 323 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
......+|++.....+... .+....+.+++++.+++++++...+-.. . .. +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344444444434333 1223459999999999999999875332 1 11 112345578999999999
Q ss_pred HHHHH
Q 000568 394 LAAKT 398 (1416)
Q Consensus 394 Lai~~ 398 (1416)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=7.3e-09 Score=118.78 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=146.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|+|++..++.+..++..... .....+.+.|+|++|+|||++|+.+++.... .+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHHH
Confidence 4699999999999888754211 1234567889999999999999999985322 11 112211 111122233333
Q ss_pred HHhcCCCC-CCCCH----HHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh--
Q 000568 270 RCITKQTI-DDSDL----NLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM-- 342 (1416)
Q Consensus 270 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-- 342 (1416)
..+..... -.++. ....+.+...+.+.+..+|+|+..... .+...++ +.+-|..|+|...+...+
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHH
Confidence 33321110 00000 112223344444555555555543221 0111111 234566677754433222
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccC
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD 422 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 422 (1416)
.....+++++++.++..+++.+.+......- + .+.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEI-D---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCc-C---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1235689999999999999998875433222 2 34677899999999965554444321 12111100 00
Q ss_pred CCC-CccCchhHHHHHHhCCChhHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHH-HHHhC
Q 000568 423 LPE-DRCGILPALRVSYYYLSPPLKQCFA-YCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQ-ELCSR 499 (1416)
Q Consensus 423 ~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~~ 499 (1416)
... ........+...|..|++..+..+. ....|+.+ .+..+.+.... | . ...+ +++.++ .|+++
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~--~~~~----~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E--ERDT----IEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C--Ccch----HHHHhhHHHHHc
Confidence 000 0012233445667788888777775 66777665 45555443322 1 1 1122 333455 79999
Q ss_pred Cccccc
Q 000568 500 SFFEKS 505 (1416)
Q Consensus 500 sll~~~ 505 (1416)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 999754
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.94 E-value=4.6e-08 Score=116.09 Aligned_cols=280 Identities=19% Similarity=0.239 Sum_probs=178.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCC-------------CC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTID-------------DS 280 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~-------------~~ 280 (1416)
.+.|.+.|..++|.||||++-+.+. +. ..=..+.|.+.++. .+.......++..++.-... ..
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 3589999999999999999998875 11 12245899998765 56778888888888743221 22
Q ss_pred CHHHHHHHHHHHhc--cccEEEEeccccccChhhHhh-hccccccCCCCcEEEEEccchHHHHhh--C-CCCeeeC----
Q 000568 281 DLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVD-MSRPLEAGAPGSKIIVTTRNQEVVAIM--G-TAPAYQL---- 350 (1416)
Q Consensus 281 ~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-~~~~l~~~~~gs~iivTtR~~~v~~~~--~-~~~~~~l---- 350 (1416)
+...+.+.+...+. .++..+||||---........ +...+.....+-.+|||||.+.-.... . .....++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33344444444333 457999999985433223333 333334455678999999986321110 0 1122333
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccCCCCCccCc
Q 000568 351 KRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGI 430 (1416)
Q Consensus 351 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i 430 (1416)
=.++.+|+-++|.......-+ +..++.+.+..+|.+-|+..++=.++.+.+.+.-...+. ...+.+
T Consensus 192 Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~l 257 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASHL 257 (894)
T ss_pred hcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHHH
Confidence 358899999999887522111 234566999999999999999988884432222111111 111112
Q ss_pred hh-HHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCccc-cccCC
Q 000568 431 LP-ALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFE-KSSND 508 (1416)
Q Consensus 431 ~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~-~~~~~ 508 (1416)
.. ...--++.||+++|.-++-||+++. + .+.|+..- +-++-+...+++|.+++|+- +-++.
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCC
Confidence 22 1234578999999999999999854 1 23333321 11233566799999999975 44566
Q ss_pred CCceEehHHHHHHHHHhccC
Q 000568 509 TSKFVMHDLVNDLARWAAGE 528 (1416)
Q Consensus 509 ~~~~~mHdlv~~~~~~~~~~ 528 (1416)
..+|+.|.++.+|.+.....
T Consensus 321 ~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CceeehhHHHHHHHHhhhcc
Confidence 78999999999998866543
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.88 E-value=2.5e-07 Score=110.58 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=127.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc---ccccC--cEEEEEecCCcCHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV---QDHFD--LKAWTCVSNDFDVIR 263 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 263 (1416)
+..+.|||+|+++|...|...-. +.....++.|+|++|.|||++++.|...... +.... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999998865332 2233467889999999999999999874321 11122 356777777677888
Q ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc---cccEEEEeccccccChhhHhhhccccc-cCCCCcEEEE--Eccch
Q 000568 264 LTKTILRCITKQTI-DDSDLNLLQEELNKQLS---RKKFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIV--TTRNQ 336 (1416)
Q Consensus 264 ~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iiv--TtR~~ 336 (1416)
++..|.+++..... ......+....+...+. ....+||||+|+.-....-+.+...+. ....+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88888888854432 22233344444444442 223589999996532111122222222 1224556554 34321
Q ss_pred H--------HHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 337 E--------VVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 337 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
+ +...++ ...+...+++.++-.+++..++......-.+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 112222 234677999999999999999854322223344455555555555556677766655543
No 34
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=1.1e-08 Score=105.59 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVI---RLTKTILRCITKQTIDDSDLNLLQEELN 290 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 290 (1416)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~-- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQE-- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHH--
Confidence 58999999999999999999986433332 4456677665543322 33333333332211 111111111
Q ss_pred HHhccccEEEEeccccccChh-------hHhhhcccccc--CCCCcEEEEEccchHH---HHhhCCCCeeeCCCCChhhH
Q 000568 291 KQLSRKKFLLVLDDVWNENYN-------DWVDMSRPLEA--GAPGSKIIVTTRNQEV---VAIMGTAPAYQLKRLSTDDC 358 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~~~~~-------~~~~~~~~l~~--~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 358 (1416)
..-..++++||+|++++.... .+..+...+.. ..++.++|||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 112578999999999765321 12222222222 2468999999998765 33344456899999999999
Q ss_pred HHHHHHhh
Q 000568 359 LSVFTQHS 366 (1416)
Q Consensus 359 ~~lf~~~~ 366 (1416)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.86 E-value=3.2e-08 Score=113.08 Aligned_cols=275 Identities=14% Similarity=0.123 Sum_probs=147.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||++..++++..++..... .......+.++|++|+|||+||+.+++.... .+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCc-hhHHHHH
Confidence 3689999999999998864221 1234566889999999999999999884322 11 11221111111 1222223
Q ss_pred HHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh-
Q 000568 270 RCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~- 342 (1416)
..+..... +... ......+...+.+.+..+|+|+..... . +...++ +.+-|.+||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~---~~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--S---VRLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--c---eeecCC---CeEEEEecCCccccCHHHH
Confidence 33322110 0001 122334455555556666666653331 1 111111 245566677765443322
Q ss_pred -CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhccc
Q 000568 343 -GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW 421 (1416)
Q Consensus 343 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~ 421 (1416)
.....+++++++.++..+++.+.+..... ..+ .+....|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 12346899999999999999988753322 122 3456779999999997665555432 1111000000
Q ss_pred CCCC-CccCchhHHHHHHhCCChhHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHH-HHHh
Q 000568 422 DLPE-DRCGILPALRVSYYYLSPPLKQCFA-YCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQ-ELCS 498 (1416)
Q Consensus 422 ~~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~ 498 (1416)
.... ........+...|..++++.+..+. .++.++.+ .+..+.+.... |. ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHH
Confidence 0000 0011222245567888888877666 55666543 34444333322 11 1123555677 6999
Q ss_pred CCccccc
Q 000568 499 RSFFEKS 505 (1416)
Q Consensus 499 ~sll~~~ 505 (1416)
++|+...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999753
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=5.4e-09 Score=107.27 Aligned_cols=127 Identities=22% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEE
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 1210 (1416)
+.|++|+|++|.+. .+.+...-.|.++.|++|+|.+...- .+..+++|+.|+|++ +.+..+......+.++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeeh
Confidence 47999999999776 45667788899999999999977643 488899999999985 455555444445789999999
Q ss_pred ccccCCCcCcccccCcCccceeeeecCCCCCCCC-CCCCCCCCCcceeEecCCCC
Q 000568 1211 SECERLEALPRGLRNLTCLQHLTIGDVLSPERDP-EDEDRLPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1211 ~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~-~~~~~l~~~L~~L~l~~~~~ 1264 (1416)
++|.+. .+ ..++.+-+|..||+++|+|..+.. ..++.+| .|+.+.+.+|+.
T Consensus 360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPL 411 (490)
T ss_pred hhhhHh-hh-hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCc
Confidence 999875 33 467888999999999998876643 2355565 666666666663
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.9e-09 Score=114.72 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=102.4
Q ss_pred CccEEEEecCCchhhhH-HhhccCCcccEEeeccCCCcccc--cccccCCCCcceeeeccCCCcccccCCC--CCCCCcc
Q 000568 1132 SLKFLDVWECPKLESIA-ERLNNNTSLEVIDIGNCENLKIL--PSGLHNLCQLQRISIWCCGNLVSFSEGG--LPCAKLT 1206 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~~L~ 1206 (1416)
+|+...|.+++...... .....|++++.||||+|-+..-. -.....+++|+.|+|+.|... .+.... ..++.|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhh
Confidence 45555555544321110 23445666666666666544321 122345666666666543221 111111 1256777
Q ss_pred eEEEccccCCC-cCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1207 RLEISECERLE-ALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1207 ~L~l~~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
.|.|++|.++. .+-..+..+|+|+.|++..|....+..... ..+..|+.|+|++|+.+..- .. .....++.|+
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~-~~----~~~~~l~~L~ 274 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFD-QG----YKVGTLPGLN 274 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccccc-cc----cccccccchh
Confidence 77777777762 223344567788888888775222222222 33457888888877655422 10 1256677777
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccc--cCccccCCcCcEEecCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLS--SSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~ 1352 (1416)
.|+++.+...-..+|+-. .+.-....++|++|.+.. |++...+ ..+..+++|+.|.+..++
T Consensus 275 ~Lnls~tgi~si~~~d~~-----s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVE-----SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhccccCcchhcCCCcc-----chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence 777777532222222110 000012345566666665 3443332 123333666666655544
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=3.7e-07 Score=98.35 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.++|++|+|||+||+++++.. ......+.|+++.... ....+ +.+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc-c
Confidence 3678999999999999999999853 2223345666653210 00001 111112 2
Q ss_pred cEEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEE-Eccc---------hHHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIV-TTRN---------QEVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
.-+||+||+|... ...|+. +...+.. ...|..+|| |++. +.+...++....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 245553 3332322 123556654 4543 3566666666789999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+.+....- ..+ +++.+-|++++.|-.-++..+-..+
T Consensus 172 ~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98864432 222 3566779999998776665544433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.1e-08 Score=109.24 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=16.9
Q ss_pred cCccEEEeecCCCCcccc--ccccCCCCcceEEEccC
Q 000568 966 CKLEYLGLSYCQGLVTLP--QSLLNLSSLREIYIRSC 1000 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n 1000 (1416)
.+|+.+.|.++.. +..+ .....|++++.|+|++|
T Consensus 121 kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 121 KKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred HhhhheeecCccc-cccchhhhhhhCCcceeecchhh
Confidence 3555556655544 2222 23445555555555555
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=2.4e-06 Score=108.86 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=176.5
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc-ccccCcEEEEEecCCc---CHHHHHHH
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHFDLKAWTCVSNDF---DVIRLTKT 267 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~---~~~~~~~~ 267 (1416)
++||+.+.+.|...+... ..+...++.+.|..|||||+++++|..-..- ++.|-...+-...... .....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 689999999999988654 3456779999999999999999999874221 1222111111122221 22344455
Q ss_pred HHHHhcCCC-------------------C----------------------CCCCHHH-----HHHHHHHHh-ccccEEE
Q 000568 268 ILRCITKQT-------------------I----------------------DDSDLNL-----LQEELNKQL-SRKKFLL 300 (1416)
Q Consensus 268 il~~l~~~~-------------------~----------------------~~~~~~~-----~~~~l~~~l-~~kr~Ll 300 (1416)
++.++.... . ....... .+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 554442110 0 0000000 111222222 3569999
Q ss_pred EeccccccChhhHhhhccccccCC------CCcEEEEEccch--HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 301 VLDDVWNENYNDWVDMSRPLEAGA------PGSKIIVTTRNQ--EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 301 VlDdv~~~~~~~~~~~~~~l~~~~------~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
|+||+...+....+-+........ ...-.+.|.+.. .+.........+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999995543333322221111110 111223333332 22222233467999999999999999887643222
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHHHhccC------CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK------HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLK 446 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 446 (1416)
. ..+....|+++..|+|+.+..+-..+... .+...|..-..+.. ..... +.+...+..-.+.||...|
T Consensus 238 ~----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~~~~~-~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 L----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-ILATT-DAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred c----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-Cchhh-HHHHHHHHHHHhcCCHHHH
Confidence 1 24566779999999999999999988764 23344544332211 11111 2245568888999999999
Q ss_pred HHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCccccc-----cCCCC---ceEehHHH
Q 000568 447 QCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKS-----SNDTS---KFVMHDLV 518 (1416)
Q Consensus 447 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~-----~~~~~---~~~mHdlv 518 (1416)
......|++... |+.+.|...|-. ..+..+....+.|....++-.+ ..... +-..||.+
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999654 456666555521 2234455555555544444211 11111 22579999
Q ss_pred HHHHHHh
Q 000568 519 NDLARWA 525 (1416)
Q Consensus 519 ~~~~~~~ 525 (1416)
++.|...
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 9887643
No 41
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=2e-07 Score=102.44 Aligned_cols=293 Identities=16% Similarity=0.170 Sum_probs=185.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..+-+.++|.|||||||++-.+.. ++..|. .+.++....-.+...+.-.+...++-.... .+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 358899999999999999977765 455674 455566665556666666666656644322 2334455667778
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhCCCCeeeCCCCChh-hHHHHHHHhhcCCC-CC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTD-DCLSVFTQHSLDSR-DF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~~ 372 (1416)
++|.++|+||..+. .+.-......+..+...-.|+.|+|..-. ..+.....+..|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998442 11222333444455566678888887532 234456778888875 78999887764322 11
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccC-------CCCCccCchhHHHHHHhCCChhH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD-------LPEDRCGILPALRVSYYYLSPPL 445 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~-------~~~~~~~i~~~l~~sy~~L~~~~ 445 (1416)
.-...-.....+|.++..|.|++|..+++..+.-. ..+-..-++..... .........+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11222345677799999999999999999987653 22222222211111 11123457789999999999999
Q ss_pred HHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCcccccc-CCCCceEehHHHHHHHHH
Q 000568 446 KQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKSS-NDTSKFVMHDLVNDLARW 524 (1416)
Q Consensus 446 k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~~-~~~~~~~mHdlv~~~~~~ 524 (1416)
+--|.-++.|...+.-. ...|.+-|-........ ...-+..+++++++...+ .+...|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~-----~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYL-----VLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccccchHH-----HHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998876543 33455544332111111 222366788888876533 234467777777777766
Q ss_pred hccC
Q 000568 525 AAGE 528 (1416)
Q Consensus 525 ~~~~ 528 (1416)
+.++
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 5543
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=3.5e-09 Score=114.48 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCccc
Q 000568 808 GQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRG 885 (1416)
Q Consensus 808 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 885 (1416)
.+.|+++.|.+.+|..++.......+ ...++|+.+.+..|..|....-... ...+++|++|+++.|+.+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l---a~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL---AEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---HHhhhhHHHhhhccCchhhc
Confidence 34566666666666544443221111 1156666666666655544332211 35688999999999988875
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=6.4e-07 Score=100.75 Aligned_cols=98 Identities=23% Similarity=0.435 Sum_probs=68.0
Q ss_pred HHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcC
Q 000568 1148 AERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLT 1227 (1416)
Q Consensus 1148 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~ 1227 (1416)
...+..+.++..|++++|.+. .+|. -.++|++|.+++|+.+..+|... | ++|+.|++++|.....+| +
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP------~ 112 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLP------E 112 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCcccccccc------c
Confidence 334566789999999999644 3452 23579999999988888887533 3 689999999885554555 3
Q ss_pred ccceeeeecCCCCCCCCCCCCCCCCCcceeEecCC
Q 000568 1228 CLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNM 1262 (1416)
Q Consensus 1228 ~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~ 1262 (1416)
+|+.|+++++.... +..+|++|+.|.+.++
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSY 142 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheecccc
Confidence 57777777654432 3457778888887543
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.46 E-value=1.2e-06 Score=103.57 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred eeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 191 KVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 191 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
++||++..+.. +.+++... ....+.++|++|+||||+|+.+++.. ... |+.++.........++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHH
Confidence 58888877655 77776432 34577889999999999999998743 222 2222221111111222
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchH--HHHh-
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQE--VVAI- 341 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~--v~~~- 341 (1416)
+++ ..... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +...
T Consensus 80 ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 222 11111 145788999999987655556666554432 444544 344332 1111
Q ss_pred hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 342 MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 342 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
......+.+.+++.++.+.++.+.+....... ..--.+..+.|++.|+|.+..+..+...
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 12236789999999999999988653211100 0111355677999999999766544433
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.9e-06 Score=94.03 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+.-...||++|+||||||+.+... ....| ..++...+-.+-++++++.- -+....+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~g 103 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIEEA----------------RKNRLLG 103 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHHHH----------------HHHHhcC
Confidence 4666779999999999999999873 33333 33444333333333333321 1223358
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchHHH---HhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQEVV---AIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
+|.+|++|.|..-+..+.+.+ ||.-..|.-|+| ||-++... .......++++++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 899999999965444444444 344456777776 66665321 1123447899999999999999988432211
Q ss_pred CCCC--ChhH-HHHHHHHHHhcCCChHHH
Q 000568 371 DFSS--NKSL-EEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 371 ~~~~--~~~~-~~~~~~i~~~~~glPLai 396 (1416)
..-. ...+ ++...-+++.++|---++
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 1000 0111 235556888888865443
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=5.5e-07 Score=88.37 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccc---cccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQ---DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++.+++.......+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999853211 0023467999888889999999999999987666567778888888888
Q ss_pred ccccE-EEEecccccc-ChhhHhhhccccccCCCCcEEEEEccc
Q 000568 294 SRKKF-LLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRN 335 (1416)
Q Consensus 294 ~~kr~-LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~ 335 (1416)
...+. +||+|+++.- +...++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76655 9999999765 5444444533332 566777777665
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=9.4e-07 Score=99.42 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNM 1262 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~ 1262 (1416)
++|++|++++|... .+|..+. .+|+.|+++.|..... ......+|+++ .|++.+|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sL-eI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTW-NISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccc-cCccccccccc-Eechhhh
Confidence 46666666666644 2333332 4666666665532211 11223455555 6666655
No 48
>PTZ00202 tuzin; Provisional
Probab=98.44 E-value=2.1e-05 Score=87.71 Aligned_cols=166 Identities=12% Similarity=0.127 Sum_probs=101.6
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+.+.|+||+++..++...|...+. ...+++.|.|++|+|||||++.+..... ...++.-.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHH
Confidence 4466899999999999999865432 2457999999999999999999986432 123332223 6799999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-----c-cccEEEEeccccccC-hhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL-----S-RKKFLLVLDDVWNEN-YNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~-~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
.++.+++.+.. ....++.+.|.+.+ . +++.+||+-=-.-.+ ..-+.+. ..+.....-|+|++---.+.+-
T Consensus 328 ~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 328 SVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 99999997432 22234444444333 2 566666654221111 0112221 1233344567888765544321
Q ss_pred Hhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 340 AIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 340 ~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
... ..-.-|-++.++.++|.++..+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 111358899999999988876553
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=2e-06 Score=93.68 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=101.3
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++... ......++++++.-... ...+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~---~~~~------ 84 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA---DPEV------ 84 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh---HHHH------
Confidence 44567777776532 2357889999999999999999987432 22334556655432110 0011
Q ss_pred CCCCCCCHHHHHHHHHHHhccccEEEEeccccccChh-hHh-hhcccccc-CCCCcEEEEEccchH---------HHHhh
Q 000568 275 QTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN-DWV-DMSRPLEA-GAPGSKIIVTTRNQE---------VVAIM 342 (1416)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 342 (1416)
...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+|++... +...+
T Consensus 85 ---------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 ---------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ---------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 111222 238999999764322 232 33333322 123458889888532 22233
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
.....+++.++++++...++...+..... ..+ .+..+.|++.+.|.|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33467999999999999988876532221 122 3455668888999998877665443
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=9.4e-06 Score=97.46 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=114.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+....... |..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999985432 2456679999999999999988875322211 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
++++.+.. ...+++.+.+... ..++.-++|||+++..+...|+.++..+.....+
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222111 1122222222211 1244558899999887767788888877665567
Q ss_pred cEEEEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 000568 327 SKIIVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGG 401 (1416)
Q Consensus 327 s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 401 (1416)
.++|+||.+.+ +...+ .-...++++.++.++..+.+.+.+..++.... .+..+.|++.++|.. -|+.++-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78887777643 32111 12257999999999999999887643332111 345566999999865 45554333
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=7.3e-06 Score=93.45 Aligned_cols=179 Identities=18% Similarity=0.262 Sum_probs=117.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc----ccccccCcEEEEEe-cCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH----RVQDHFDLKAWTCV-SNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 264 (1416)
.+++|.+..++.+..++..+. -.....++|+.|+||||+|+.++... ....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999985432 34677899999999999999998742 12345665556542 22233322
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH-Hh-h
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-AI-M 342 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~-~ 342 (1416)
.+++.+.+.... ..+++-++|+|+++.-+...++.+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 223333222111 12456678888887666678889988888777788888888665322 11 1
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
.....+++.++++++....+.+...+ .+ .+.++.++..++|.|..+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 22357999999999998888665421 11 23356789999999876543
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=1.1e-07 Score=95.36 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=30.2
Q ss_pred cCCcCcEEecCCCCCCCCCCC---CCccccceeeecCChhhHHhhccCCCccc-cccCccceEEE-CCeecCcccccccc
Q 000568 1340 HQNLTKLKLCNCPKLKYFPEK---GLPASLLRLEISGCPLIEERYIKDGGQYR-HLLTYIPCIII-NGRPVDLDLKQRRI 1414 (1416)
Q Consensus 1340 ~~~L~~L~l~~~~~l~~l~~~---~~~~sL~~L~l~~cp~l~~~~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~~ 1414 (1416)
+|+|+.|++++|. +.++... .-+++|+.|++.+||.-+. ..++ .-+.++|.+++ |+.+++..+|+.++
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~ 159 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK------KNYRLFVIYKLPSLKVLDGQDVTEEERQEAE 159 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------TTHHHHHHHH-TT-SEETTEETTS-B-----
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch------hhHHHHHHHHcChhheeCCEEccHHHhcccc
Confidence 4677777777664 5555442 1246777888888876321 1222 23578999876 99999988887765
Q ss_pred c
Q 000568 1415 E 1415 (1416)
Q Consensus 1415 ~ 1415 (1416)
.
T Consensus 160 ~ 160 (175)
T PF14580_consen 160 K 160 (175)
T ss_dssp -
T ss_pred c
Confidence 4
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=1e-08 Score=110.97 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=98.7
Q ss_pred CCcceEEEccccCCCcCc--ccccCcCccceeeeecCCCCCCCCCC---CCCCCCCcceeEecCCCCCcccccccCCCCC
Q 000568 1203 AKLTRLEISECERLEALP--RGLRNLTCLQHLTIGDVLSPERDPED---EDRLPTNLHSLNIDNMKSWKSFIEWGQGGGG 1277 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~ls~n~~~~~~~~~---~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1277 (1416)
+-+.++++.+|....... ..-..+..|+.|+.++| +.+.... +..-..+|+.|.+++|.+++...-.. .
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~--t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----l 341 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC--TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----L 341 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC--CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh----h
Confidence 345555555664332221 11123566777777776 2222222 12222477777777777655332110 0
Q ss_pred CCCCCCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCccc-----ccCccccCCcCcEEecCCC
Q 000568 1278 LNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERL-----SSSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1278 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~ 1352 (1416)
-.+.+.|+.+++.++....+. + +-..-...+.|+.|.+++|..++.. .........|..+.+++|+
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~-t--------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDG-T--------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hcCChhhhhhcccccceehhh-h--------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 244567777777765332221 0 0001134677888888888766654 4444555789999999999
Q ss_pred CCCCCC--CCCCccccceeeecCChhhHHhhccCCCccccccCccceEEECCe
Q 000568 1353 KLKYFP--EKGLPASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIIINGR 1403 (1416)
Q Consensus 1353 ~l~~l~--~~~~~~sL~~L~l~~cp~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 1403 (1416)
.++.-- .....++|+.+++.+|..+.+.-.+ ...+|.|++.+...
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVHAY 459 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceehhh
Confidence 765532 1233578999999998654332211 23457888876443
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=8.6e-06 Score=94.49 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=109.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc-------------------CcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-------------------DLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~ 250 (1416)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++........ ...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999998885432 24567899999999999999998753211111 111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
.++..+....+ +..+++++.+ ... ..+++-++|+|+++..+...++.+...+.......++
T Consensus 91 ~~~~~~~~~~v-~~ir~i~~~~-----------------~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKV-EEMREILDNI-----------------YYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCH-HHHHHHHHHH-----------------hcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11211111111 1111111111 100 1244569999999877656677777777655556677
Q ss_pred EEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 330 IVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 330 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
|++|.+ ..+.... +....+++.+++.++..+.+.+.+...+..- + .+.++.|++.++|.|-.+..
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~---~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-D---EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 766654 3333222 2235799999999999988887664322111 1 34566799999998864433
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.37 E-value=3.7e-05 Score=93.08 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=137.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|++..++++.+|+..... +...+.+.|+|++|+||||+|+.+++... |+ ++-++.+..... ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 3589999999999999865321 12267899999999999999999998542 22 233344433222 2223332
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh----hhHhhhccccccCCCCcEEEEEccch-HHHH-hh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY----NDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVA-IM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~-~~- 342 (1416)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113678999999976422 234445444432 234566666432 1111 11
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccC-CC--cchHHHHHhhc
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK-HG--PSDWEDVLNSN 419 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~--~~~w~~~l~~~ 419 (1416)
.....+.+.+++.++....+.+.+...+.. .+ .++...|++.++|-.-.+......+... .. .+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-CD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 233578999999999988888776443322 22 3456779999999776555433333322 11 222222221
Q ss_pred ccCCCCCccCchhHHHHHHh-CCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCC
Q 000568 420 IWDLPEDRCGILPALRVSYY-YLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDH 478 (1416)
Q Consensus 420 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 478 (1416)
......++.++..-+. .-+......+..+ .++. ..+..|+.+.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1122456666665554 2233333322221 1222 45778999999865
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.8e-05 Score=90.31 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=130.6
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
.+.+|+.+++++...|...-. +....-+.|+|.+|.|||+.++.|....+....=..+++|++-...+..+++..|++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 388999999999988865432 222334889999999999999999985332221122789999999999999999999
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhc--cccEEEEeccccccChhhHhhhccccccCC-CCcEEEE--EccchHHHHhhC--
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVDMSRPLEAGA-PGSKIIV--TTRNQEVVAIMG-- 343 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-~gs~iiv--TtR~~~v~~~~~-- 343 (1416)
+++..........+....+.+.+. ++.++||||+++.-....-+.+...+.... .+++|++ .+-+......+.
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 998555555666677777777765 578999999996532111122222222221 2455443 333333222221
Q ss_pred -----CCCeeeCCCCChhhHHHHHHHhhcCC-CCCCCChh-HHHHHHHHHHhcCCChHHHHHHHH
Q 000568 344 -----TAPAYQLKRLSTDDCLSVFTQHSLDS-RDFSSNKS-LEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 344 -----~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
....+..++-+.+|-.+++..++-.. ......+. ++-+|...++..|---.||.++-.
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 12347889999999999999887321 12222333 333444444444444455554433
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.2e-06 Score=96.27 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc--cCcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH--FDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+....... -.... +.....-...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 468999999999999986542 2456789999999999999999874322100 00000 000000001111
Q ss_pred HHHHh-----cCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchH
Q 000568 268 ILRCI-----TKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQE 337 (1416)
Q Consensus 268 il~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~ 337 (1416)
|...- .........++++.+.+... ..++.-++|||+++..+...++.++..+..-..+.++|+ ||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 11000 00000111223322222221 135566999999988877788888887766445666555 444444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+...+ .....+.++.++.++..+.+.+.+...+... . .+..+.|++.++|.|.....+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-E---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 43222 1125699999999999998887653322111 1 234567999999999655443
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=7.6e-06 Score=95.44 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=108.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCH--HHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDV--IRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 266 (1416)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++.... ..+. ..+.++++.-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 46889999999999988543 3346789999999999999999874321 1121 2334444321100 00000
Q ss_pred --HHHHHhcCC-CCCCCCHHHHHHHHHHH---h--ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-H
Q 000568 267 --TILRCITKQ-TIDDSDLNLLQEELNKQ---L--SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-E 337 (1416)
Q Consensus 267 --~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~ 337 (1416)
.....++.. .......+.....++.. . .+.+-+||+||++.........+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00000112222212111 1 1344589999997654344444555444444456788777543 2
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
+...+ .....+++.+++.++...++.+.+...+.. .+ .+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHH
Confidence 22222 223568899999999998888876433321 11 34666799999987755543
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=5.9e-07 Score=111.78 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=57.6
Q ss_pred ccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEcc
Q 000568 1133 LKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISE 1212 (1416)
Q Consensus 1133 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~ 1212 (1416)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++ +|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~------------------------~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT------------------------SLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC------------------------CCCEEECCC
Confidence 45555555555555555555555555555555555555554444444 555555555
Q ss_pred ccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCC
Q 000568 1213 CERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1213 n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
|.+.+.+|..+.++++|+.|+|++|.+.+..|..+..++.++..+++.+|+
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 555555555555555566666665555555555444333344555555544
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.1e-05 Score=95.83 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=112.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+ . .....-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~------~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVT------S-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC------C-CCCccCHHHHHHh
Confidence 468999999999999986442 246788999999999999999987432211100 0 0000000111111
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHH----HhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNK----QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 339 (1416)
..-... .......+++.+.+.. -..+++-++|+|+|..-+...++.+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 0001122222221111 123566789999998776667777777776555566777777653 222
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
.. ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 123367999999999999888877644332222 34556699999997755443
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9.9e-06 Score=99.39 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=113.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++....... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999885432 2455689999999999999999975422111 1111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+++.......+. .++++ +..+.. -..+++-++|||++..-....++.++..+.......++
T Consensus 91 iEidAas~~kVD-dIReL-----------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVD-DTREL-----------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHH-HHHHH-----------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111111 11222 222211 12467779999999887777788887777655556666
Q ss_pred EEEccc-hHHHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 330 IVTTRN-QEVVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 330 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
|++|.+ ..+... ......+++++++.++..+.+.+.+-...... -.+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 665554 433322 12236799999999999998887663322111 1345677999999988544433
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.9e-06 Score=102.81 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=113.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.+.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999999999988885432 24567999999999999999998754332222222332221100 000000000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~- 342 (1416)
..+... .....+.+.+ +.+. +.+++-++|+|+++......++.+...+........+|++|.. ..+...+
T Consensus 88 ~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000 0111222211 2221 2345679999999877666787887777655455565555543 3332222
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
.....+++.+++.++..+.+.+.+-..+.... .+.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22357999999999999999887643332111 345677999999988544
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.31 E-value=2.9e-08 Score=111.44 Aligned_cols=174 Identities=22% Similarity=0.240 Sum_probs=118.3
Q ss_pred cEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccc
Q 000568 1134 KFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213 (1416)
Q Consensus 1134 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n 1213 (1416)
...+++.|++. .+|..++.+..|+.+.+++|.+ ..+|..+.++..|..|+|+. +.+..+|...+.| -|+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecC
Confidence 45667777665 4566677777888888888774 44677778888888888874 4455566555554 4778888777
Q ss_pred cCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccC
Q 000568 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRD 1293 (1416)
Q Consensus 1214 ~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1293 (1416)
++. .+|..++.++.|..||.+.|.+..+.+ . +..+.+|+.|.+..|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slps-q-------------------------------l~~l~slr~l~vrRn- 199 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-Q-------------------------------LGYLTSLRDLNVRRN- 199 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhchH-H-------------------------------hhhHHHHHHHHHhhh-
Confidence 765 677777777777788877775544322 1 445555555555543
Q ss_pred CcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1294 QDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
.+..+|.|.. -=.|..|+++ ||++..||.++.++..|+.|.|.+|| |++-|.
T Consensus 200 -~l~~lp~El~-----------~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 200 -HLEDLPEELC-----------SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred -hhhhCCHHHh-----------CCceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChH
Confidence 3344555431 1136677777 47899999888888999999999888 787665
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.31 E-value=5.8e-06 Score=84.48 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=93.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||.+.-++.+.-++..... .++...-+..||++|+||||||+.+++.. ...| .+.+...-... .-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~---~~~sg~~i~k~-~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNF---KITSGPAIEKA-GDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--E---EEEECCC--SC-HHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCe---EeccchhhhhH-HHHHHHH
Confidence 4799999888887655543211 23456788899999999999999999843 3333 12222111111 1112222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhcccccc--------CCC-----------CcEEE
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEA--------GAP-----------GSKII 330 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~--------~~~-----------gs~ii 330 (1416)
..+ +++-+|.+|.+..-+...-+.+..+..+ .++ =+-|=
T Consensus 97 ~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 222 2344566677644332222222222111 111 12344
Q ss_pred EEccchHHHHhhCC--CCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 331 VTTRNQEVVAIMGT--APAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 331 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
.|||...+...+.. .-..+++..+.+|-.++..+.+..-.. +--++.+.+|++++.|-|--+.-+-..++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 68887655443332 234589999999999999887743222 11256788899999999966555544443
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.7e-05 Score=92.47 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=113.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCc-EEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDL-KAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..+..+...+.... -...+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 368999999998888775432 2467889999999999999999875422111100 000000000 000111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEV 338 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v 338 (1416)
....... .......+++...+... +.+++-++|+|+++.-+...|+.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 1000000 00111223322222211 245677999999988766778888877766555666554 5555555
Q ss_pred HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 339 VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 339 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.... .....+++.+++.++....+.+.+...+.... .+....|++.++|.+--+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 4433 23357999999999999999888754332211 2445669999999774443
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.25 E-value=1.2e-06 Score=92.14 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=33.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ 244 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 244 (1416)
.||||+++++++...+... .....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999521 33456999999999999999999998854333
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=2.2e-07 Score=95.69 Aligned_cols=218 Identities=19% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCccEEEEecCCc--------hhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC
Q 000568 1130 PQSLKFLDVWECPK--------LESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP 1201 (1416)
Q Consensus 1130 ~~~L~~L~L~~n~~--------~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 1201 (1416)
...|.+|.++...- -..+|-.+.-+.+|+++.+|+|.-..+ ......-|.|+++.+.+ .-+...| ...|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~-s~~~~~~-~l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHN-TTIQDVP-SLLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeec-ccccccc-cccc
Confidence 35788888875421 122333455677888888888874322 12222345677777752 2222211 2222
Q ss_pred CCCcceEEEcccc-CCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCC
Q 000568 1202 CAKLTRLEISECE-RLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNR 1280 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 1280 (1416)
..++....-+.-. ..+.....+.....|+.||+|+|.|+.+... . .+.+.++.|++++|.... + +.++.
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDES-v-KL~Pkir~L~lS~N~i~~-v-------~nLa~ 327 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDES-V-KLAPKLRRLILSQNRIRT-V-------QNLAE 327 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhh-h-hhccceeEEeccccceee-e-------hhhhh
Confidence 1111111110000 0111112223344555555555554444221 1 222355555555543222 1 11445
Q ss_pred CCCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC-
Q 000568 1281 FSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE- 1359 (1416)
Q Consensus 1281 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~- 1359 (1416)
+++|+.|++++|. +..+.. |-..+-+++.|.++. |.+++++ ++.++-+|..|++++|+ +..+.+
T Consensus 328 L~~L~~LDLS~N~--Ls~~~G----------wh~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV 392 (490)
T KOG1259|consen 328 LPQLQLLDLSGNL--LAECVG----------WHLKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEV 392 (490)
T ss_pred cccceEeecccch--hHhhhh----------hHhhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccccc-hhhHHHh
Confidence 5555555555531 111111 112344555555555 4555554 45555566666666554 443322
Q ss_pred --CCCccccceeeecCCh
Q 000568 1360 --KGLPASLLRLEISGCP 1375 (1416)
Q Consensus 1360 --~~~~~sL~~L~l~~cp 1375 (1416)
.|-.+-|+.+.+.+||
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 2333455555555555
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.1e-05 Score=93.89 Aligned_cols=186 Identities=18% Similarity=0.147 Sum_probs=113.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 250 (1416)
.+++|.+..++.+...+.... ....+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999999885432 245678999999999999999987432110 12222
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+++.......+. +..++.+.+... ..+++-++|+|+++.-+...++.++..+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 233222211111 112222222211 2456779999999876666777788777665456666
Q ss_pred EE-EccchHHHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 000568 330 IV-TTRNQEVVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGL 402 (1416)
Q Consensus 330 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~ 402 (1416)
|+ ||....+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+ -|+..+-.+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 54 5544444422 223367999999999988887775533221111 345566999999966 455554433
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=1.6e-05 Score=90.79 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=105.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..++.|..++... ..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 35889998888888877432 334577999999999999999987431 11221 11222223222221 22222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCC
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAP 346 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~ 346 (1416)
++.+...... .-.++.-++|+|+++.-.......+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 001345699999998765555555655554434556777766442 221111 1125
Q ss_pred eeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
.++++++++++....+...+-..+..-. .+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6899999999999888877744332222 345667999999876433
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.23 E-value=6.8e-06 Score=82.93 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=72.1
Q ss_pred eeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHh
Q 000568 193 YGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCI 272 (1416)
Q Consensus 193 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 272 (1416)
+|++..++.+...+... ..+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 346889999999999999999998542 112345666655433322211111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh---hhHhhhccccccC---CCCcEEEEEccchH
Q 000568 273 TKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY---NDWVDMSRPLEAG---APGSKIIVTTRNQE 337 (1416)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~~~l~~~---~~gs~iivTtR~~~ 337 (1416)
............++.++|+||++.... ..+......+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222245678999999985321 2222222222221 35778888888653
No 71
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=4e-06 Score=81.27 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=78.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
+++.|.|+-|+||||++++++.+.. ....+++++..+......... + +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999997543 234466776655432110000 0 2233333344477
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh------CCCCeeeCCCCChhhH
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM------GTAPAYQLKRLSTDDC 358 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 358 (1416)
.+|+||+|... .+|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999665 67888777776665678999999987655331 1224578899887763
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.21 E-value=2.1e-05 Score=84.95 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=88.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.|+|..|+|||+|++++++.. ......+.|+++.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 569999999999999999998743 22233456665432 111111 1111 11 123
Q ss_pred EEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHHh
Q 000568 298 FLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 298 ~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++..++.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 123332 2222211 22466799999853 23333344568999999999999999987
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
+....- ..+ +++..-|++.++|-.-.+
T Consensus 175 a~~~~l-~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL-ALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC-CCC---HHHHHHHHHhCCCCHHHH
Confidence 753322 122 345566888888766544
No 73
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=1.7e-06 Score=107.66 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=75.0
Q ss_pred cccCCCcchhhccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCC
Q 000568 1112 FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGN 1191 (1416)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 1191 (1416)
+..+++.+.++. .+..++ +|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+.
T Consensus 425 L~~n~L~g~ip~-~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 425 LDNQGLRGFIPN-DISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCCccccCCH-HHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 344555555554 466675 999999999999999999999999999999999999999998888888888888877665
Q ss_pred cccccCCCCC-CCCcceEEEcccc
Q 000568 1192 LVSFSEGGLP-CAKLTRLEISECE 1214 (1416)
Q Consensus 1192 l~~~~~~~~~-~~~L~~L~l~~n~ 1214 (1416)
...+|..... ..++..+++.+|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccCChHHhhccccCceEEecCCc
Confidence 5555543322 1233444555444
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.19 E-value=2.6e-05 Score=90.14 Aligned_cols=181 Identities=11% Similarity=0.144 Sum_probs=104.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe--cCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV--SNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 267 (1416)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+++.... ..+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYG-EDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcC-Cccc-cceEEeccccccchH-HHHH
Confidence 35889999999999998543 2345799999999999999999874311 1121 112222 2221111 1111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCC
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTA 345 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~ 345 (1416)
.+..+..... .....+-++++|+++.-....+..+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001235689999986654444555555554444556777766432 221111 123
Q ss_pred CeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 346 PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 346 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
..+++.+++.++....+...+...+..-. .+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 46899999999998888877643332111 3456678999999876543
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.7e-05 Score=93.77 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=109.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+....... |..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999986532 2457889999999999999999874322111 1011
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
+.++.+.. ...+.+.+.+... ..+++-++|+|++...+....+.++..+......
T Consensus 91 lEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 12211111 1122222222110 2356679999999776555566677666544456
Q ss_pred cEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 327 SKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 327 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+++|++|.+. .+.... +....+.+..++.++....+.+.+-..+.... .+....|++.++|.+.-+..+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 6777666543 222111 12245888999999999988877643332211 345667999999988544433
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.3e-05 Score=90.81 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=111.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++......... ...+...... ..+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC----~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSC----LEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHH----HHHH
Confidence 468999999999998885432 134678999999999999999987532211100 0011111111 1111
Q ss_pred HHhcCCC-----CCCCCHH---HHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQT-----IDDSDLN---LLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
....... ......+ ++.+.+... ..++.-++|+|++..-+...++.++..+........+|. ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111110 0011122 222222211 235667999999988777788888777755434555554 44444443
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
... .....+.+.+++.++..+.+.+.+...+..-. .+....|++.++|.+--+.
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHH
Confidence 222 22356999999999998888877643332111 3456779999999884433
No 77
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.17 E-value=2.7e-05 Score=96.03 Aligned_cols=203 Identities=19% Similarity=0.169 Sum_probs=119.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc---CcEEEEEecCC---cCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF---DLKAWTCVSND---FDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 263 (1416)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999888777322 24579999999999999999998754332222 12334443221 12222
Q ss_pred HHHH---------------HHHHhcCCCC----------------CCCC-HHHHHHHHHHHhccccEEEEeccccccChh
Q 000568 264 LTKT---------------ILRCITKQTI----------------DDSD-LNLLQEELNKQLSRKKFLLVLDDVWNENYN 311 (1416)
Q Consensus 264 ~~~~---------------il~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 311 (1416)
+... .+...+.... +... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 1111111000 0111 123567788888899999998888777666
Q ss_pred hHhhhccccccCCCCcEEEE--EccchHH-HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHH
Q 000568 312 DWVDMSRPLEAGAPGSKIIV--TTRNQEV-VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVI 387 (1416)
Q Consensus 312 ~~~~~~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 387 (1416)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+..... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78888776666555555555 5664321 1111 12246788999999999999987643211 111 234445666
Q ss_pred hcCCChHHHHHHHHH
Q 000568 388 KCNGLPLAAKTLGGL 402 (1416)
Q Consensus 388 ~~~glPLai~~~~~~ 402 (1416)
.+..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 655445666655544
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.7e-05 Score=91.73 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=109.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++...... |.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999999885432 246788999999999999999987532211 11100 000001111111
Q ss_pred HHhcCC-----CCCCCCHHHHH---HHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQ---EELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~ 339 (1416)
...... .......+++. ..+... ..+++-++|+|+++.-+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 00001122221 111110 12344479999998766667777777765544455655544 444443
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGG 401 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~ 401 (1416)
.. ......+++.+++.++....+...+...+..- + .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-E---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 22335799999999999988887664322111 1 3456679999999664 4444443
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.5e-05 Score=94.70 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=112.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|...+.... -...+.++|..|+||||+|+.+++.......+.. .....-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 468999999999998885432 2355789999999999999999875322111000 0000001111111
Q ss_pred HHhcC-----CCCCCCCHHHH---HHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITK-----QTIDDSDLNLL---QEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-.. .......++++ ++.+... ..+++-++|+|+++.-+...++.++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000 00000112222 2222111 2466779999999887777788888777665456666655544 4333
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
.. ......+.+++++.++..+.+.+.+-..+.... .+....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 122367999999999999888876532221111 344566999999988644444
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.15 E-value=6.1e-05 Score=88.47 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=110.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc--------------------cccCc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ--------------------DHFDL 249 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 249 (1416)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+....... .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 358999999999999885432 24578899999999999999887643211 0222
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 250 KAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 250 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
..++........ ...+++...+... -+.+++-++|+|+++.-.....+.+...+......+.+
T Consensus 88 ~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 122222211111 1112222221110 01245568999999765545566676666544456666
Q ss_pred EEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 ivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|++|.+.. +...+ .....+++.++++++..+.+...+-..+.. .+ .+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCChHHHHHHH
Confidence 66665433 33222 223568899999999988888766432211 11 3566779999999987665444
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.14 E-value=4e-06 Score=90.09 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC--cCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND--FDVIRLTKTILRCITKQTIDDSDLN------LLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 287 (1416)
....++|+|++|+|||||+++++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999976444 8999999997776 7888999988444333222221111 1222
Q ss_pred HHHHH-hccccEEEEecccc
Q 000568 288 ELNKQ-LSRKKFLLVLDDVW 306 (1416)
Q Consensus 288 ~l~~~-l~~kr~LlVlDdv~ 306 (1416)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24789999999994
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=4.1e-05 Score=81.67 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=97.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
...-+.+||++|+||||||+.+....+... ..||..|....-..-.++|+++-.. ...+..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 467788999999999999999998543333 5677777665544555555554321 123467
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchHH---HHhhCCCCeeeCCCCChhhHHHHHHHhhc---
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQEV---VAIMGTAPAYQLKRLSTDDCLSVFTQHSL--- 367 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--- 367 (1416)
+|.+|.+|.|..-+..+.+ ..+|.-..|.-++| ||.++.. +..+..-.++.|+.|+.++...++.+...
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 8999999999543222222 23455667877776 6766532 12223346899999999999888877432
Q ss_pred CCC---CCCCCh---hHHHHHHHHHHhcCCChH
Q 000568 368 DSR---DFSSNK---SLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 368 ~~~---~~~~~~---~~~~~~~~i~~~~~glPL 394 (1416)
... +.-+++ --..+.+-++..|.|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111 111221 123455667777888653
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.5e-05 Score=90.42 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=107.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+.....|...+.... -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888888775432 2356789999999999999999874322110 0011
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
..++.+....+..+ +++.+. +.. -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 111111 110 12345679999999665444556666665543334444
Q ss_pred EE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCC-ChHHHHHHHHHh
Q 000568 330 IV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNG-LPLAAKTLGGLL 403 (1416)
Q Consensus 330 iv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~~l 403 (1416)
|+ |+....+...+ .....+++.+++.++....+.+.+...+..- + .+....|++.++| .+.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-D---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44 44333443332 2335789999999999888888764332211 1 3455668887765 567777666543
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.2e-06 Score=70.35 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=37.1
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
|+|++|++++|.+....+..|.++++|++|++++|.+..+.+..|.++| +|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence 3566666666666544445666666666666666666666666666664 66666666553
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.12 E-value=4.8e-05 Score=82.32 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|+.|+|||+|++.+++... ..-..+.++++..... ...+..+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-
Confidence 35789999999999999999987432 2223455665533110 0011111111 1
Q ss_pred cEEEEeccccccC-hhhHhhh-cccccc-CCCC-cEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVDM-SRPLEA-GAPG-SKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~~-~~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
--++++||+.... ...|+.. ...+.. ...| .++|+||+.. ++..++....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999996532 1344432 222221 1123 4799999853 344555566789999999999999988
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+++...+ ...+ +++..-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG-FELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8664322 1222 4566779999988776665444433
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.5e-05 Score=91.53 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=110.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-.... |..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 368999999999999996542 2456789999999999999999875322111 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+.++.+....+..+ +++++.+... -..++.-++|+|+|+.-+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322222222221 2222221110 113556689999998876677777777776655567766
Q ss_pred EEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 331 VTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 331 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
++|.+ ..+.... .....+++++++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 65543 3333221 22356889999999887776666533222111 23456689999998855443
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5e-05 Score=92.07 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=112.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc--CcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..-..... .....-.+.. -...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHH
Confidence 368999998999999886542 24677899999999999999997643221100 0000000000 011111
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 268 ILRCITK-----QTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 268 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
|...-.. .......++++.+.+... ..++.-++|||+|+.-+...++.++..+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000000 000111222222222111 12445589999998877778888888776654566666555 4344
Q ss_pred HHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 338 VVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 338 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+... ......++++.++.++..+.+.+.+...+.... .+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 223467999999999999888877643332111 345667899999977554433
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8.9e-05 Score=85.00 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=114.6
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEE---EEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAW---TCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~ 266 (1416)
.+++|.+..++.+.+.+.... -...+.++|+.|+||+|+|..+.+..-.......... .........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999886542 2456889999999999999888774322111000000 00000000001111
Q ss_pred HHHHHhcCC---------C-----CCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 267 TILRCITKQ---------T-----IDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 267 ~il~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
.+...-... . ...-.++++ +.+.+.+ .+.+-++|+||++..+......+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111111000 0 011123332 2233333 2556799999998877777778887776655566
Q ss_pred EEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 328 KIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 328 ~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.+|++|... .+.... .....+.+.+++.++..+++...... ..+ +....+++.++|.|+.+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 677776664 332222 22357999999999999999876421 111 112568999999998665543
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=6.2e-06 Score=91.76 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCCCCCHHHHH-----HH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTIDDSDLNLLQ-----EE 288 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~-----~~ 288 (1416)
..+...|+|++|+||||||++||++.... +|+.++||.+.+.. .+.++++.+...+-....+........ -.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999976544 89999999998887 677777777643332222222211111 11
Q ss_pred HHHH--hccccEEEEecccc
Q 000568 289 LNKQ--LSRKKFLLVLDDVW 306 (1416)
Q Consensus 289 l~~~--l~~kr~LlVlDdv~ 306 (1416)
..++ -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 1222 25789999999993
No 90
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=1.6e-06 Score=87.22 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=18.0
Q ss_pred cccEEeeccCCCccccccccc-CCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccc-cCcCccceee
Q 000568 1156 SLEVIDIGNCENLKILPSGLH-NLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGL-RNLTCLQHLT 1233 (1416)
Q Consensus 1156 ~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~ 1233 (1416)
++++|+|.+|.+... +.++ .+.+|+.|++++ +.+..+. ++..++.|++|++++|.+... ...+ ..+|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 445555555544331 1232 344555555542 2333332 222345666666666666532 2222 3456666666
Q ss_pred eecCCCCCC
Q 000568 1234 IGDVLSPER 1242 (1416)
Q Consensus 1234 ls~n~~~~~ 1242 (1416)
+++|++.++
T Consensus 95 L~~N~I~~l 103 (175)
T PF14580_consen 95 LSNNKISDL 103 (175)
T ss_dssp -TTS---SC
T ss_pred CcCCcCCCh
Confidence 666665554
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.5e-05 Score=86.31 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=108.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc------------------cC
Q 000568 191 KVYGRETEKKEIVELLLRDDLR----NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH------------------FD 248 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~ 248 (1416)
+++|.+..++.|..++...... +..-..-+.++|++|+|||++|+.++........ ..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999998654210 0113466889999999999999998764221110 01
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccC
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAG 323 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 323 (1416)
.+.++.... .....+++.. +.+.+ .+++-++|+|+++.-+....+.+...+...
T Consensus 86 D~~~i~~~~--------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEG--------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEecccc--------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111221110 0111222221 11111 245558888999877666666677766555
Q ss_pred CCCcEEEEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 324 APGSKIIVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 324 ~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
..+..+|++|.+ ..+.... .....+.+.+++.++..+.+..... .+ .+.+..+++.++|.|.....+.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 556666665555 3333332 2236799999999999988875431 11 2446779999999997665443
No 92
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.4e-07 Score=100.13 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=57.1
Q ss_pred ccCccEEEeecCCCCcc----ccccccCCCCcceEEEccCCC---ccccC--------CCCCCCCccEEeEccCCCCCcC
Q 000568 965 SCKLEYLGLSYCQGLVT----LPQSLLNLSSLREIYIRSCSS---LVSFP--------EVALPSKLRLITIWDCEALKSL 1029 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~~---~~~~~--------~~~~~~~L~~L~l~~~~~~~~~ 1029 (1416)
..++++|+||+|.+... +...+.+.++|+..+++.--- ...+| .....+.|++|+||+|-+-..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 36889999999987542 344667778888888875311 11122 1334568999999999865544
Q ss_pred chhh--hcCCCCCcCeeEEccCC
Q 000568 1030 PEAW--MCETNSSLEILNIAGCS 1050 (1416)
Q Consensus 1030 ~~~~--~~~~~~~L~~L~l~~c~ 1050 (1416)
+..+ +..++.+|+.|.+.+|-
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC
Confidence 3322 22678889999998874
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.8e-05 Score=90.67 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=108.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 250 (1416)
.++||.+..++.+..++.... -...+.++|+.|+||||+|+.+........ .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999999886532 235678999999999999999986432211 11112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+++..+....+. .+++++...... -..+++-++|+|+++.-+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 222221111111 111222211100 013566799999998766666777777776544566666
Q ss_pred EEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000568 331 VTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 331 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 399 (1416)
++|.+ +.+...+ .....+++++++.++..+.+.+.+...+.... .+..+.|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 3222111 11256899999999998888776533221111 3455679999999775 44443
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.8e-05 Score=87.32 Aligned_cols=182 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-------------------cccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-------------------DHFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 250 (1416)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.++...... +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999988888875432 24578899999999999999887632110 111123
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+.++.+....+.+ .+++++..... -+.+++-++|+|++..-+...++.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 12222211100 013456689999997766667777877776655667766
Q ss_pred EEc-cchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 331 VTT-RNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 331 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
++| ....+...+ .....+++.+++.++..+.+.+.+...+..-. .+....|++.++|.+-.+.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 555 444444332 23367899999999999998887754332222 3455679999999875443
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.05 E-value=3.8e-05 Score=95.40 Aligned_cols=169 Identities=23% Similarity=0.284 Sum_probs=95.8
Q ss_pred CeeeeehhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKK---EIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+|+|++..+. .+.+.+.. +....+.++|++|+||||+|+.+++. ...+|. .++.+. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 35889888774 45555533 23456789999999999999999974 333331 111110 0000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh--ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEE--ccch--HHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL--SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVT--TRNQ--EVVA 340 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT--tR~~--~v~~ 340 (1416)
+..+......+.+ .+++.++|+||++.-....++.+...+. .|..++|+ |.+. .+..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111112222211 2467899999997665555666554332 35555553 4432 1222
Q ss_pred hh-CCCCeeeCCCCChhhHHHHHHHhhcC------CCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 341 IM-GTAPAYQLKRLSTDDCLSVFTQHSLD------SRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 341 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
.. .....+.+++++.++...++.+.+-. ......+ .+..+.|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 11 12357999999999999998876531 1111112 3455668888888643
No 96
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=3.9e-06 Score=100.19 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=133.7
Q ss_pred EEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCC-CcceeeeccCCCcccccCCCCCCCCcceEEEccc
Q 000568 1135 FLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLC-QLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213 (1416)
Q Consensus 1135 ~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n 1213 (1416)
.+++..+....... .+..++.+..|++.+|.+... +.....+. +|+.|+++ .+.+..+|.....+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~-~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccC-ccccccchhhccccccc-ccchhhhhhhhhccccccccccCCc
Confidence 46666665533222 234457888888888886654 34445553 88889887 4556666545555789999999999
Q ss_pred cCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccC
Q 000568 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRD 1293 (1416)
Q Consensus 1214 ~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1293 (1416)
++. .+|...+.++.|+.|++++|.+..+.+.. ..+..|+.|.+++|+.+.... .+..+..+..+.+.+|.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~~-------~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELLS-------SLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcceecch-------hhhhcccccccccCCce
Confidence 877 55555557889999999999887775431 344568899998886444332 26777777777766542
Q ss_pred CcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1294 QDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
+..++. ....+++++.|++++ +.++.++. +....+|+.|+++++.....+|.
T Consensus 244 --~~~~~~----------~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 244 --LEDLPE----------SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --eeeccc----------hhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchh
Confidence 222111 224677899999998 58888885 77779999999999875444443
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=5.2e-05 Score=89.13 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=111.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE-ecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC-VSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 268 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++............|.. .......-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 368999999999988885432 234578999999999999999987543221111111110 00000000111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
....... .......+++.+ +.+.+ .+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1110000 001111333332 22222 3456689999997766567778877776655566666554 4444
Q ss_pred HHHhhC-CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 338 VVAIMG-TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 338 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
+...+. ....+++.++++++..+.+...+-..+..-. .+.++.|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 433221 2246889999999988888776532221111 35667799999997754433
No 98
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.00015 Score=80.95 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=129.1
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+..++||+.|++.+.+++...- .....+-+.|.|.+|.|||.+...|+.+......=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 35679999999999999997653 2345678899999999999999999986433222234577777665667788888
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccc--cEEEEeccccccChhhHhhhccccc-cCCCCcEEEEEccch------HH
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRK--KFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIVTTRNQ------EV 338 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iivTtR~~------~v 338 (1416)
|...+...........+.+..+.+...+. -+|+|+|.++.--...-..+...|. +.-+++|+|+.---. ..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88777322222222245556666666544 5899999996532122223333333 234677766533211 11
Q ss_pred HHhh-----CCCCeeeCCCCChhhHHHHHHHhhcCCCC-CCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 339 VAIM-----GTAPAYQLKRLSTDDCLSVFTQHSLDSRD-FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 339 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
...+ .....+..++.+.++-.+++.++...... ...+..++-.|++++...|.+--|+.+.-+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111 12356888999999999999998743322 1222233444444444444444444444433
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00015 Score=82.58 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=115.6
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--ccCcEEEEEecCCcCHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
-..++|.+...+.+...+.... ....+.|+|+.|+||||+|+.+.+..-... .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3468999999999999985442 245788999999999999998887432211 011110 000111111223
Q ss_pred HHHHHhcC-------C--C-----CCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 267 TILRCITK-------Q--T-----IDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 267 ~il~~l~~-------~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
.+...-.. + . ...-.++++. .+.+.+ .+++-++|+|+++.-+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222110 0 0 0111234332 334443 3566799999998877677777777776544455
Q ss_pred EEEE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 328 KIIV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 328 ~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.+|+ |++...+.... .....+++.+++.++..+++.+.+.... .+ .+.+..|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5444 44443333222 1235799999999999999987432111 11 2345679999999998665443
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=4.6e-06 Score=68.42 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=36.7
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccC
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCC 1189 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~ 1189 (1416)
+|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666666666666555556666666666666666666555556666666666666654
No 101
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=3.6e-07 Score=102.93 Aligned_cols=78 Identities=33% Similarity=0.560 Sum_probs=38.1
Q ss_pred CCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcc
Q 000568 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQT 680 (1416)
Q Consensus 601 l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 680 (1416)
++.|..|.||||+.|++..+|..++.|. |+.|.+++| .++.+|..|+.+..|.+||.+.|. +..+|..++.|++|+.
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHH
Confidence 3444444455555555555555454443 455555442 444455555544555555555544 4445544444444444
Q ss_pred c
Q 000568 681 L 681 (1416)
Q Consensus 681 L 681 (1416)
|
T Consensus 194 l 194 (722)
T KOG0532|consen 194 L 194 (722)
T ss_pred H
Confidence 4
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=0.00017 Score=75.60 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=63.4
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+.+-++|+|+++.-....++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999997766566777777776655566777776643 232222 22357999999999999888876 1 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLa 395 (1416)
+ .+.+..|++.++|.|..
T Consensus 170 --~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred --C---HHHHHHHHHHcCCCccc
Confidence 1 34677899999998853
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.00 E-value=9.4e-05 Score=79.94 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 46789999999999999999987432 1123466665432 1110 011 22222222
Q ss_pred cEEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEEEccchH---------HHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIVTTRNQE---------VVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
. ++|+||+.... ...|.. +...+.. ...|..+|+|++... +..++....++++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889996431 234443 3333321 234668888887532 223333446789999999999999987
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
++.... ...+ +++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 764332 1222 3567779999998876665544443
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00011 Score=89.29 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=114.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC--cEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD--LKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ...+..+... ...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 468999999999999986442 245688999999999999999987532221110 0000001100 11112
Q ss_pred HHHHhcCCC-----CCCCCHHHHHH---HHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 268 ILRCITKQT-----IDDSDLNLLQE---ELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 268 il~~l~~~~-----~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
|...-.... ......+++.. .++.. +.+++-++|+|+++.-+....+.+...+..-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 221111100 01112233222 22111 22455689999997776666777777776555566666544 4444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
+...+ .....+++..++.++....+.+.+-..+... . .+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-E---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 43332 2235789999999999998888764332211 1 2456679999999886655443
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.00 E-value=7.5e-05 Score=81.05 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=88.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|..|+|||+||+.+++.... .. ....+++...... . + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~-~~-~~~~~i~~~~~~~------~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY-GG-RNARYLDAASPLL------A----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEehHHhHH------H----H------------------hh-ccc
Confidence 467889999999999999999874311 11 1344454433110 0 0 01 122
Q ss_pred cEEEEeccccccChhhHhhhcccccc-CCCCc-EEEEEccchHHH--------HhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 297 KFLLVLDDVWNENYNDWVDMSRPLEA-GAPGS-KIIVTTRNQEVV--------AIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs-~iivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
.-+||+||++..+...-..+...+.. ...+. .||+|++..... ..+.....++++++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34789999965432222333333322 12333 466776643221 123334678999999988777776644
Q ss_pred cCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 367 LDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
-.... ..+ +++.+.+++.+.|.+..+..+-..+
T Consensus 171 ~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22221 122 3466778889999999888776655
No 106
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=6.6e-05 Score=80.24 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=87.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|+.|+|||+|++.++.... ..+++.. ....+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 46789999999999999998886421 1233221 111111111 111
Q ss_pred cEEEEecccccc--ChhhHhhhccccccCCCCcEEEEEccc---------hHHHHhhCCCCeeeCCCCChhhHHHHHHHh
Q 000568 297 KFLLVLDDVWNE--NYNDWVDMSRPLEAGAPGSKIIVTTRN---------QEVVAIMGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 297 r~LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-+|++||+... +...+-.+...+. ..|..||+|++. +++..++....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999543 1222223322222 236789998874 334455566678999999999999999988
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
+-... ...+ +++.+-|++.+.|..-++..+-.
T Consensus 166 ~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHHH
Confidence 74322 1222 35666788888887776664333
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=0.00013 Score=77.70 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=102.9
Q ss_pred eeee-hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYGR-ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
++|. .+..-...+.+.... +.....+.|+|..|+|||.|.+++++.......-..+++++ ..+....+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 4564 333344444454432 22455688999999999999999998532211112355553 3345555555
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-hhHhh-hcccccc-CCCCcEEEEEccch---------HH
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-NDWVD-MSRPLEA-GAPGSKIIVTTRNQ---------EV 338 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v 338 (1416)
.+... ..+ .+++.++ .-=+|++||++.... ..|.. +...+.. ...|.+||+|++.. ++
T Consensus 82 ~~~~~-----~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRDG-----EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHTT-----SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHcc-----cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 44331 122 2333333 234889999976432 22332 2222211 13467899999653 34
Q ss_pred HHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 339 VAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 339 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
..++....++++++++.++-.+++.+++...+- ..+ +++++-|++.+.+..-.+..+-.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~l~---~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-ELP---EEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-CCc---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 455556678999999999999999998853332 122 45667788888776665554433
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.98 E-value=0.00027 Score=76.25 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=121.9
Q ss_pred Ceeeeeh---hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc----CcEEEEEecCCcCHH
Q 000568 190 AKVYGRE---TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF----DLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~ 262 (1416)
+.+||-. +.++++.+++... .....+-+.|||.+|+|||++++++...+-....- -.++.|.....++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455543 3455666666543 34556779999999999999999999754222111 146677888889999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc-cEEEEecccccc---C---hhhHhhhccccccCCCCcEEEEEccc
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK-KFLLVLDDVWNE---N---YNDWVDMSRPLEAGAPGSKIIVTTRN 335 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~---~---~~~~~~~~~~l~~~~~gs~iivTtR~ 335 (1416)
.+...|+.+++...........+...+.+.++.- --+||+|.+.+. . +.+.-.....+...-.=+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 9999999999988766666666666655665433 348899999552 1 11222222333222234456666664
Q ss_pred hHHHHhh-----CCCCeeeCCCCChhh-HHHHHHHhh--cCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 336 QEVVAIM-----GTAPAYQLKRLSTDD-CLSVFTQHS--LDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 336 ~~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.--+-.. +-..++.++....++ ...|+.... ..-..+.. -...++++.|...++|+.--+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 3221110 112456677766654 444543332 11111111 2236789999999999874433
No 109
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.6e-07 Score=96.93 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCccEEEEecCCchh-hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCC--CCCCCCcce
Q 000568 1131 QSLKFLDVWECPKLE-SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEG--GLPCAKLTR 1207 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~L~~ 1207 (1416)
+.|++|||++-.++. .+...++.|.+|+.|.|.++.+...+...+..-.+|+.|+|+.|+.++..... +..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368999999887764 45667888999999999999988777677777788999999988877653221 122677777
Q ss_pred EEEccccCCCcCcc-ccc-CcCccceeeeecC
Q 000568 1208 LEISECERLEALPR-GLR-NLTCLQHLTIGDV 1237 (1416)
Q Consensus 1208 L~l~~n~~~~~~p~-~l~-~l~~L~~L~ls~n 1237 (1416)
|+|+.|.+....-. .+. --++|..|+++++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 77777776543211 111 1245666666665
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00014 Score=87.35 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=112.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+++..-.....+.. ....-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHh
Confidence 357899988888888885432 24677889999999999999998754321111000 000001111111
Q ss_pred HHhcCCC-----CCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHH
Q 000568 270 RCITKQT-----IDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEV 338 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v 338 (1416)
....... .....++++. .+.+. ..+++-+||+|+++.-....++.+...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1100000 0001122211 12211 2356679999999877666677777777544345556665544 444
Q ss_pred HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHHh
Q 000568 339 VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGLL 403 (1416)
Q Consensus 339 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l 403 (1416)
...+ .....+++++++.++....+...+....... + .+.++.|++.++|.+ .|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-D---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 2235789999999999988887664332211 1 345667999999965 6777766554
No 111
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=2.9e-07 Score=97.89 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=37.2
Q ss_pred cccCCCCcceEEEccCCCccccC-----CCCCCCCccEEeEccCCC---CCcCchhhh-----cCCCCCcCeeEEcc
Q 000568 985 SLLNLSSLREIYIRSCSSLVSFP-----EVALPSKLRLITIWDCEA---LKSLPEAWM-----CETNSSLEILNIAG 1048 (1416)
Q Consensus 985 ~l~~l~~L~~L~L~~n~~~~~~~-----~~~~~~~L~~L~l~~~~~---~~~~~~~~~-----~~~~~~L~~L~l~~ 1048 (1416)
.+....++++|++++|.+-..-. .+...+.|+..++++--. ...+|...- ...++.|+.|++|+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 45567888999999987654321 233455777777765431 112332211 14556788888887
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00024 Score=86.85 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=109.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-cC------c---------EEEE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-FD------L---------KAWT 253 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~------~---------~~wv 253 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.++...-.... .. | ++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 368999999999999986532 2466789999999999999999864321110 00 0 0111
Q ss_pred EecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEE-E
Q 000568 254 CVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII-V 331 (1416)
Q Consensus 254 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-v 331 (1416)
....... ..+..++++.+... ..+++-++|+|++..-....+..+...+........+| +
T Consensus 93 daasn~~------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 93 DAASNNG------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred eccccCC------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 1000000 01112222222211 23566699999997766667777777765544455544 4
Q ss_pred EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHH
Q 000568 332 TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLG 400 (1416)
Q Consensus 332 TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 400 (1416)
|++...+.... .....+++.+++.++....+...+-..+.... .+.++.|++.++|.+- |+..+-
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55555554332 23357999999999998888876533221111 2456679999999764 444333
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.3e-07 Score=94.66 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=105.3
Q ss_pred CccEEEeecCCCCcc-ccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 967 KLEYLGLSYCQGLVT-LPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
.|++||||+..+... +-.-+..+.+|+.|.|.++.+...+. .+....+|+.|+|+.|.-++......+..+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666544322 22234566667777766665544332 3455566777777777666655555555777778888
Q ss_pred EEccCCCcccc---cCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchh
Q 000568 1045 NIAGCSSLTYI---TGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATL 1121 (1416)
Q Consensus 1045 ~l~~c~~l~~l---~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~ 1121 (1416)
+|++|.-.+.. -...+.++|+.|++++|..--. .+....|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------------------------~sh~~tL------------- 308 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------------------------KSHLSTL------------- 308 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------------------------hhHHHHH-------------
Confidence 88877533221 1114446666666666631100 0000000
Q ss_pred hccccCCCCCCccEEEEecCCch-hhhHHhhccCCcccEEeeccCCCcccccc---cccCCCCcceeeeccCC
Q 000568 1122 ESLEVGNLPQSLKFLDVWECPKL-ESIAERLNNNTSLEVIDIGNCENLKILPS---GLHNLCQLQRISIWCCG 1190 (1416)
Q Consensus 1122 ~~~~~~~l~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~L~~~~ 1190 (1416)
.... ++|..|||++|... ......+..++-|++|.++.|..+ +|. .+...|+|.+|++.+|-
T Consensus 309 ----~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 ----VRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----HHhC-CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 1122 37888888887654 355566788888999999888743 343 35677888888887653
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=9.4e-06 Score=84.21 Aligned_cols=239 Identities=13% Similarity=0.055 Sum_probs=130.1
Q ss_pred ccEEEEecCCchh--hhHHhhccCCcccEEeeccCCCcc--cccccccCCCCcceeeeccCCCcccccCCCCCCCCcceE
Q 000568 1133 LKFLDVWECPKLE--SIAERLNNNTSLEVIDIGNCENLK--ILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRL 1208 (1416)
Q Consensus 1133 L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 1208 (1416)
++-|.+.+|.+.. .....-..++.++.+||.+|.+.. .+...+.++|.|++|+|++|+....+..-..|..+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4455555655532 233334567788888888888764 333456778888888888655444333333567789999
Q ss_pred EEccccCCC-cCcccccCcCccceeeeecCCCCCCCC--CCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1209 EISECERLE-ALPRGLRNLTCLQHLTIGDVLSPERDP--EDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1209 ~l~~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~~--~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
-|.+..+.- .....+..+|.++.|++|.|++..+.. .......+.+++|+..+|.......... .-..+|++.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~----l~r~Fpnv~ 202 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK----LSRIFPNVN 202 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh----HHhhcccch
Confidence 988776542 233456778999999999995544322 2233444567777777775443221100 023345555
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCC---CCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFP---EKGL 1362 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~ 1362 (1416)
.+-+.+|+. ..... .++...+|.+--|+++.+. +.+.. .-.-
T Consensus 203 sv~v~e~Pl--K~~s~--------------------------------ek~se~~p~~~~LnL~~~~-idswasvD~Ln~ 247 (418)
T KOG2982|consen 203 SVFVCEGPL--KTESS--------------------------------EKGSEPFPSLSCLNLGANN-IDSWASVDALNG 247 (418)
T ss_pred heeeecCcc--cchhh--------------------------------cccCCCCCcchhhhhcccc-cccHHHHHHHcC
Confidence 555555421 11111 1122223444444444433 33221 1122
Q ss_pred ccccceeeecCChhhHHhhccCCCccccccCccceEEE-CCeecCcccccc
Q 000568 1363 PASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIII-NGRPVDLDLKQR 1412 (1416)
Q Consensus 1363 ~~sL~~L~l~~cp~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 1412 (1416)
.++|..|.++.+|..+.. . .+..-.-.|+.+|++++ +|-.+..+.|.+
T Consensus 248 f~~l~dlRv~~~Pl~d~l-~-~~err~llIaRL~~v~vLNGskIss~er~d 296 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPL-R-GGERRFLLIARLTKVQVLNGSKISSRERKD 296 (418)
T ss_pred CchhheeeccCCcccccc-c-CCcceEEEEeeccceEEecCcccchhhhhh
Confidence 356666666666654321 1 01112356788999888 666776665443
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=9.8e-05 Score=86.21 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
..++.|++..+++|.+.+...-.. +-...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----
Confidence 357899999999999877432110 11234568899999999999999999843 3232 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hh---hHhhhcccccc--CCC
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YN---DWVDMSRPLEA--GAP 325 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~~ 325 (1416)
..+..... + .....+...+...-...+.+|++|+++... .. .+..+...+.. ...
T Consensus 190 ~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 0 001111112222223456899999996521 01 11122211211 124
Q ss_pred CcEEEEEccchHHH-Hhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 326 GSKIIVTTRNQEVV-AIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 326 gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
+.+||.||...+.. ..+ .....+.++..+.++..++|..++.+.... ..-.+ ..+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 66788888754322 111 123568999999999999999887543211 11223 34777787754
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00035 Score=83.19 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--c----------------cC-cE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--H----------------FD-LK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------f~-~~ 250 (1416)
.+++|.+..++.+...+.... -..++.++|+.|+||||+|+.+++..-... . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 368999999999999885432 245678999999999999998876421111 0 00 01
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
+.+..+... ..+++.+.+... ..+++-++|+|++..-+.+..+.++..+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 112111111 122222222210 1245668999999877666777777777655556
Q ss_pred cEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 327 SKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 327 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
+++|++|.+. .+.... .....+++.+++.++....+.+.+-..+.... .+.++.|++.++|.+--+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 7777666553 222111 12357999999999998888776643332111 3466779999999885554443
No 117
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.88 E-value=6.8e-06 Score=98.08 Aligned_cols=179 Identities=28% Similarity=0.360 Sum_probs=103.6
Q ss_pred cCCCccccceeeccCCCccccCccccccC-cccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCC
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLY-NLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCL 678 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 678 (1416)
.+..+..+..|++.+|.++.+|..++.+. +|+.|++++| .+..+|..++.+++|+.|++++|. +..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 33444566777777777777777777774 7777777774 566776677777777777777777 77777766666666
Q ss_pred cccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhcc
Q 000568 679 QTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758 (1416)
Q Consensus 679 ~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 758 (1416)
+.|.. .+..+..+... ......|++|.+..+. .......
T Consensus 189 ~~L~l------s~N~i~~l~~~-------------------------~~~~~~L~~l~~~~N~----------~~~~~~~ 227 (394)
T COG4886 189 NNLDL------SGNKISDLPPE-------------------------IELLSALEELDLSNNS----------IIELLSS 227 (394)
T ss_pred hheec------cCCccccCchh-------------------------hhhhhhhhhhhhcCCc----------ceecchh
Confidence 66611 11111111110 0111223333332110 0111222
Q ss_pred CCCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCc
Q 000568 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGV 824 (1416)
Q Consensus 759 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 824 (1416)
+....++..+.+.++....+|.++. .+++++.|++++|.+. .++.++.+.+|+.|+++++...
T Consensus 228 ~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 228 LSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhcccccccccCCceeeeccchhc--cccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 3344555555566666555566665 3667888888887764 3344777888888888775433
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00031 Score=82.42 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=103.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc------cccCcEE-EEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ------DHFDLKA-WTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~~~~~~~~ 262 (1416)
.+++|.+...+.+...+.... -.+.+.++|++|+||||+|+.+.+..... ..|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 357899999999999985432 24688899999999999999997642211 1121111 1111111111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchHHHHh
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQEVVAI 341 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~ 341 (1416)
+..+++++++... -..+++-++|+|+++......++.+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111222211100 012445689999997654455666655554433345555554 33333222
Q ss_pred h-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 342 M-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 342 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
. .....++++++++++....+...+...+.. .+ .+.++.|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHhCCCCHHHH
Confidence 1 223578999999999988888766433321 11 346677899999866533
No 119
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.86 E-value=4.6e-05 Score=80.26 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=114.6
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEE-EEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAW-TCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..+..+.+.+... ..++...+|++|.|||+.|.+++...--...|.+++- .++|...... +.++-
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 46889999999999988652 4688999999999999999999876544556665544 3444432221 11110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh--cccc-EEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-C
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQL--SRKK-FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-G 343 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~ 343 (1416)
.. +...+.....+.. .-++ =.||||+++....+.|..+...+......++.|+.+-. ..+...+ .
T Consensus 109 ik----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 IK----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred hc----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00 0010000000000 0123 37899999998889999999888776666775554443 2221111 1
Q ss_pred CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 344 TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 344 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
.-.-+..++|.+++...-++..+-.++...++ +..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcH
Confidence 11358899999999999888888655543333 34556999999843
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00036 Score=86.25 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=112.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... .....+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988885432 245678999999999999999987432111100 000011112222222
Q ss_pred HHhcCCC-----CCCCCHHHHHH---HHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQT-----IDDSDLNLLQE---ELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
....... ......+++.. .+... ..+++-++|+|+++.-.....+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111110 01112222221 11111 1245678999999766555666777666554455666665543 3333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
..+ .....+.+..++.++....+.+.+...+... + .+.+..|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-E---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 2235688999999998888887764332211 1 34567799999998865554433
No 121
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.85 E-value=5.9e-05 Score=84.76 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=63.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC--cCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND--FDVIRLTKTILRCITKQTIDDSDLN------LLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 287 (1416)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.++..+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 35688999999999999999999865433 8999999998866 6888999988655544333322111 1111
Q ss_pred HHHHH-hccccEEEEecccc
Q 000568 288 ELNKQ-LSRKKFLLVLDDVW 306 (1416)
Q Consensus 288 ~l~~~-l~~kr~LlVlDdv~ 306 (1416)
..... -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 12221 35889999999993
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00035 Score=84.54 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=112.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+ +..+... ...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999985432 245678999999999999999987432211110 0000000 0011110
Q ss_pred HHhc-------CCCCCCCCHHH---HHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchH
Q 000568 270 RCIT-------KQTIDDSDLNL---LQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQE 337 (1416)
Q Consensus 270 ~~l~-------~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~ 337 (1416)
..-. ........+++ +.+.+... ..+++-++|+|++..-+....+.++..+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 0000 00000111222 22222111 134566899999987776778888777766555666555 444444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGGLL 403 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 403 (1416)
+...+ .....+++..++.++..+.+.+.+...+... + .+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-D---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 2346799999999998888877654332211 1 2355668999999774 444444433
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00036 Score=85.11 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=111.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE-ecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC-VSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 268 (1416)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........+...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999998885432 245588999999999999999887543322111011110 00000000111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEV 338 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v 338 (1416)
...-... .......+++...+... ..+++-++|+|+++.-.....+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 00111233333322222 235566899999977665667777777765444555554 5444444
Q ss_pred HHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000568 339 VAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 339 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 399 (1416)
... ......+++.+++.++....+.+.+...+..- + .+.++.|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-D---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHhCCCHHHHHHHH
Confidence 433 23346799999999998888876553222111 1 3466779999999654 44433
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00057 Score=81.66 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=107.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc--c-----------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ--D-----------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-----------------~f~~~ 250 (1416)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.++...... . .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999985432 24566789999999999999987642110 0 01111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
.++..+....+. +...+.+.+... ..+++-++|+|+++.-.....+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222111111111 111111111111 1356679999999766555666776666554445555
Q ss_pred EE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 iv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|+ ||+...+.... .....+.+.+++.++....+.+.+-..+.... .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 44444433222 22357899999999988888876643222111 2455668899999776554444
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00052 Score=81.53 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=106.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc---------------------ccC
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD---------------------HFD 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 248 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999985432 246678999999999999999977432110 111
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
..++.......+.. ..++.+.+.. -..+++-++|+|+++.......+.+...+.....+.
T Consensus 92 -~~~i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111111111111 1111111110 012566789999997655455666666665544466
Q ss_pred EEEEEcc-chHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHH
Q 000568 328 KIIVTTR-NQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLG 400 (1416)
Q Consensus 328 ~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 400 (1416)
.+|++|. ...+...+ .....+++.++++++....+.+.+-..+... + .+.++.|++.++|.+- |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~---~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-S---REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666554 33332221 2235789999999999888877653322111 1 3466779999999764 444433
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00043 Score=82.18 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=101.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.|+|..|+|||+|++++.+.......-..+++++ ..++...+...+.... .....+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 45688999999999999999988432111112234443 3355666665554210 112334444333
Q ss_pred cEEEEeccccccCh-hhH-hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENY-NDW-VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+..++...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788999965421 122 223332221 12355788887642 2334444556788999999999999998
Q ss_pred hhcCCCC-CCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 365 HSLDSRD-FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 365 ~~~~~~~-~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
++-..+- ..-+ +++..-|++.++|.|-.+..+...+
T Consensus 287 ~~~~~gl~~~l~---~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVT---EEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCC---HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743221 0111 4577789999999998777555433
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=9.6e-05 Score=84.65 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++++.+...+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+....+..+.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45788899999999998643 467889999999999999999865445577888999999888766655422
Q ss_pred HHhcCCCCCCC-CHHHHHHHHHHHhc--cccEEEEeccccccChh
Q 000568 270 RCITKQTIDDS-DLNLLQEELNKQLS--RKKFLLVLDDVWNENYN 311 (1416)
Q Consensus 270 ~~l~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~ 311 (1416)
......-. ......+.+.+... ++++++|+|++...+.+
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 11100000 00112222333322 46899999999776533
No 128
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00046 Score=87.14 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=110.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC---------------------
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD--------------------- 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--------------------- 248 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.........
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 368999999999999986432 235678999999999999999987543221110
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccC
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAG 323 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 323 (1416)
.+++++.... ..++++.+ +++. ..+++-++|||+++..+...++.++..+..-
T Consensus 90 dv~eidaas~---------------------~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 90 DVTEIDAASH---------------------GGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cEEEeccccc---------------------CCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 0112211111 12222222 1111 2355568899999887777888888888765
Q ss_pred CCCcEEEEEcc-chHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 324 APGSKIIVTTR-NQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 324 ~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
...+.+|++|. ...+...+ .....|++..++.++..+++.+.+-..+... . .+....|++.++|.+..+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-E---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHH
Confidence 55666665554 34444332 2346799999999998888877653222111 1 2345668999999884443
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00032 Score=77.66 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=80.8
Q ss_pred eeeeehhHHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 191 KVYGRETEKKEIVELLLR---------DDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
.++|.+..+++|.+.... .+....+...-+.++|++|+||||+|+.++......+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478988777776543211 11112234566789999999999999999864211111111122333221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC--------hhhHhhhccccccCCCCcEEEEEc
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN--------YNDWVDMSRPLEAGAPGSKIIVTT 333 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~iivTt 333 (1416)
++. ....+ .........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 11110 1112222222222 13488999996421 112233444333333333555555
Q ss_pred cchHHHH------hh--CCCCeeeCCCCChhhHHHHHHHhhc
Q 000568 334 RNQEVVA------IM--GTAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 334 R~~~v~~------~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
...+... .+ .....+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 11 1124588899999999988887763
No 130
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.001 Score=69.58 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=101.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||.+.-++++.=.+..... .....--+.++|++|.||||||..+++...+. + -+..+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHHHH
Confidence 4699999999988877765433 44567889999999999999999999854322 1 111111111112222333
Q ss_pred HHhcCCCCC-CCCHHHH----HHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhC-
Q 000568 270 RCITKQTID-DSDLNLL----QEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG- 343 (1416)
Q Consensus 270 ~~l~~~~~~-~~~~~~~----~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~- 343 (1416)
..+...+.- .++...+ .+.+--.+.+=+.=|++.--... ..+.-.++++ +-|=.|||...+..-+.
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLppF---TLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLPPF---TLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCCCe---eEeeeccccccccchhHH
Confidence 333222100 0000000 01111112222222222211100 1122222222 12335888754433322
Q ss_pred -CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 344 -TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 344 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
..-+.+++..+.+|-.++..+.|..-.. ... ++.+.+|+++..|-|--+.-+-+..
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGI-EID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 2356889999999999999888732221 111 3567789999999996544444333
No 131
>PF14516 AAA_35: AAA-like domain
Probab=97.74 E-value=0.0026 Score=72.84 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=115.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-----cCHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-----FDVIR 263 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 263 (1416)
.+..|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+.. .+ .++++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 345678885566666666543 2589999999999999999998744332 23 3557766542 23454
Q ss_pred HHHHHHH----HhcCCCC-------CCCCHHHHHHHHHHHh---ccccEEEEeccccccCh-----hhHhhhcccccc-C
Q 000568 264 LTKTILR----CITKQTI-------DDSDLNLLQEELNKQL---SRKKFLLVLDDVWNENY-----NDWVDMSRPLEA-G 323 (1416)
Q Consensus 264 ~~~~il~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~~~~~l~~-~ 323 (1416)
.++.+.. ++..... ...........+.+++ .+++.+|++|+|+.... .++-.+...+-. .
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 5554444 4433210 0112223333444433 26799999999975321 122221111111 1
Q ss_pred C----CCcEEEEEccchH--HHHh-----hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 324 A----PGSKIIVTTRNQE--VVAI-----MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 324 ~----~gs~iivTtR~~~--v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
. ...-.+|...+.+ .... ......++|++++.+|...|..++.... . ....++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCC
Confidence 0 1122222222211 1111 1122468999999999999998764221 1 12277799999999
Q ss_pred hHHHHHHHHHhccC
Q 000568 393 PLAAKTLGGLLRGK 406 (1416)
Q Consensus 393 PLai~~~~~~l~~~ 406 (1416)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.74 E-value=0.00092 Score=74.31 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=72.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|++|+||||+|+.++......+.-...-|+.++.. . +.....+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 345788999999999999999764211111111224444421 2 222221111 11122223322 2
Q ss_pred cEEEEecccccc---------ChhhHhhhccccccCCCCcEEEEEccchHHHHhh--------CCCCeeeCCCCChhhHH
Q 000568 297 KFLLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM--------GTAPAYQLKRLSTDDCL 359 (1416)
Q Consensus 297 r~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 359 (1416)
.-+|++|++..- ..+....+...+.....+.+||+++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999642 1112223333343444456777777644332211 12357899999999998
Q ss_pred HHHHHhhc
Q 000568 360 SVFTQHSL 367 (1416)
Q Consensus 360 ~lf~~~~~ 367 (1416)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88887764
No 133
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00077 Score=82.97 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=110.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---------------------cccC
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---------------------DHFD 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 248 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+....... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999985432 24568899999999999999887743211 1222
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
+..++.+....+.. +++++.++.... +.+++=++|+|++..-+...++.+...+..-..++.
T Consensus 92 -~~~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 11222221111111 111222111000 124556889999987766677788877766545666
Q ss_pred EEE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 329 IIV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 329 iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+|+ |++...+...+ .....+++.+++.++....+.+.+-..+.... .+.+..|++.++|..--+.
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 655 44544444332 23467999999999999888876643322111 2456679999999765443
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.71 E-value=0.00076 Score=70.41 Aligned_cols=126 Identities=24% Similarity=0.279 Sum_probs=72.4
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
+.-.+++|.|.+++.|++-...-- .+....-+.+||..|.|||++++++.+....++ .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 445679999999999887553211 122345677899999999999999987432222 112223221
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc---CCC-CcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA---GAP-GSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~---~~~-gs~iivTtR~~~v~ 339 (1416)
+-.+...+.+.++. ...||+|.+||+.-+ ....+..++..+.. ..+ ...|-+||-.++..
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 11233344444442 356999999998432 22345555554432 223 33344566555544
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00089 Score=82.39 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=110.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-...... ... .....-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC----CCCcccHHHHHHh
Confidence 358899999999999886532 235678999999999999999987542211110 000 0111111222222
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
...... .......+++.+.+... ..+++-++|+|+++.-....++.++..+..-.....+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 211110 00111222222222111 1245568999999876666777787777654445555554443 3333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
..+ .....+++..++.++....+.+.+...+.. .. .+.+..|++.++|.+..+...-
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 223568888999998888777665332211 11 2456779999999886554433
No 136
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.0015 Score=71.21 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=106.0
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
++.|.+|+.++..+..++...+ ..-+..|.|+|-.|.|||.+.+++.+.... ..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHH
Confidence 4568899999999999886542 123566799999999999999999985422 36899999999999999999
Q ss_pred HHHhcCCCCCCC-------CHHHHHHHHHH--Hhc--cccEEEEeccccccChhhHhhhc-cc---ccc-CCCCcEEEEE
Q 000568 269 LRCITKQTIDDS-------DLNLLQEELNK--QLS--RKKFLLVLDDVWNENYNDWVDMS-RP---LEA-GAPGSKIIVT 332 (1416)
Q Consensus 269 l~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~~~-~~---l~~-~~~gs~iivT 332 (1416)
+.+.+..+.+.. .....+..+.+ ... ++.++||||+++.- .+.+.+. .. +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999863222221 12223333333 122 45899999999653 1222111 00 111 1122334444
Q ss_pred ccchHHHHh---hCCC--CeeeCCCCChhhHHHHHHHhh
Q 000568 333 TRNQEVVAI---MGTA--PAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 333 tR~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+-...-... .++. .++..+.-+.+|..+++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 443222222 2332 356778889999999886643
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.66 E-value=0.00018 Score=84.16 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
..++.|++..++++.+.+...-.. +-...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 347899999999998876321110 11335678899999999999999999842 222 232221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-----------ChhhHhhhcccc---cc--CCC
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-----------NYNDWVDMSRPL---EA--GAP 325 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~ 325 (1416)
..+. ....+ .....+...+...-...+.+|++||++.- +...+..+...+ .. ...
T Consensus 199 ~~l~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 11110 01111111222222345689999999652 011111222222 11 123
Q ss_pred CcEEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 326 GSKIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 326 gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
+..||.||...+... .+ .....+.++..+.++-.++|+.+..+..- ...-.+ ..+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 567777777643221 11 12356899999999999999987643221 111223 3366677664
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.66 E-value=0.0012 Score=69.98 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
+.+.|+|++|+|||+|++.+++... . .++. ..... + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999998877432 1 1111 00000 0 001 123
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-------HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-------EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
-++++||+..-.......+...+. ..|..||+|++.. +...++....++++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899995321111111211121 3466899998853 2334445556899999999998888877764221
Q ss_pred CCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 371 DFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 371 ~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
...+ +++.+-|++++.|---.+.-
T Consensus 165 -l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 -VTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCCC---HHHHHHHHHHccCCHHHHHH
Confidence 1122 45667788888876554443
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0017 Score=79.01 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=111.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..-....... ..+....+- +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 368999999999999986532 2467889999999999999999875322111000 000000000 1110
Q ss_pred HHhcC-----CCCCCCCHHHHHHHH---HH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITK-----QTIDDSDLNLLQEEL---NK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-.. ........+++.... .. -..+++-++|+|++..-+...++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00000 000011222222221 11 12356668999999777666777787777654456666655543 3343
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
..+ .....+++.+++.++..+.+.+.+...+.... .+.+..|++.++|.+-.+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 22356899999999998888877643332111 345666999999987554433
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.63 E-value=0.0011 Score=73.78 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF 298 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 298 (1416)
-+.++|++|+|||++|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999987776322122221123444432 11 222222211 11222223322 235
Q ss_pred EEEecccccc---------ChhhHhhhccccccCCCCcEEEEEccchHHHHhh--------CCCCeeeCCCCChhhHHHH
Q 000568 299 LLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM--------GTAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 299 LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 361 (1416)
+|+||++..- ....+..+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 1122334444444444566777776543222211 1235689999999999999
Q ss_pred HHHhh
Q 000568 362 FTQHS 366 (1416)
Q Consensus 362 f~~~~ 366 (1416)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0009 Score=82.24 Aligned_cols=194 Identities=15% Similarity=0.184 Sum_probs=106.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-.....+. .....-...++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999885432 2456789999999999999999875321111000 0000000001110
Q ss_pred HHhcCC-----CCCCCCHHH---HHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQ-----TIDDSDLNL---LQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
..-... .......++ +...+... ..+++-++|+|+++.-+....+.+...+..-...+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 000000 000011122 22111111 124455899999977666667777777765445666665 54444444
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 399 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 399 (1416)
..+ .....+++.+++.++....+...+-..+.... .+.+..|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 22356889999999988877765532221111 345566899999866 444444
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=3.2e-06 Score=97.88 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=91.2
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEc
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 1211 (1416)
.|...+.+.|.+. .+...+.-++.|+.|+|++|++.... .+..++.|++|||++|. +..+|.-...--.|..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeec
Confidence 5777777777654 45566778889999999999977643 67889999999998654 44444322222249999999
Q ss_pred cccCCCcCcccccCcCccceeeeecCCCCCCCCCCC-CCCCCCcceeEecCCCC
Q 000568 1212 ECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDE-DRLPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1212 ~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~-~~l~~~L~~L~l~~~~~ 1264 (1416)
+|.+... ..+.++.+|+.||+++|-+.+.....+ ..+ ..|+.|.+.||+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 9987633 367889999999999997776544332 334 5888889988874
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=5.4e-05 Score=56.40 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=21.4
Q ss_pred ccceeeccCCCccccCccccccCcccEEecCCC
Q 000568 606 VFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638 (1416)
Q Consensus 606 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 638 (1416)
.|++|++++|+|+.+|..|++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456677777777777666777777777777765
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.56 E-value=0.00059 Score=78.49 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=84.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. ... ...++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHH
Confidence 468999999999999985432 35677789999999999999998743 111 23344433 111 1111111
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchH-HHHhh-CCCC
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQE-VVAIM-GTAP 346 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~ 346 (1416)
..+... ..+.+.+-++|+||++.. .......+...+.....++++|+||.... +...+ ....
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001234568899999755 22223334433444446778888886532 11111 1224
Q ss_pred eeeCCCCChhhHHHHHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~ 364 (1416)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777777777665543
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0017 Score=79.32 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=107.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+....-....-+ ....+.-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 246677899999999999999976432111000 00000001111111
Q ss_pred HHhcCCC-----CCCCCHHHHH---HHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQT-----IDDSDLNLLQ---EELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
....... ......+++. ..+... ..+++-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1100000 0011122222 111110 135566889999977666677777776655434555554 44444333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
... .....+++.+++.++....+...+-..+.... .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 22356889999999988888776633221111 2456678889998775444
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.55 E-value=0.0015 Score=77.67 Aligned_cols=161 Identities=13% Similarity=0.158 Sum_probs=91.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||+||+++++....+..-..+++++. .++..++...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 456889999999999999999985322111123455543 23344444444321 2222 3333332
Q ss_pred cEEEEeccccccChh-hH-hhhcccccc-CCCCcEEEEEccch-H--------HHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENYN-DW-VDMSRPLEA-GAPGSKIIVTTRNQ-E--------VVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-+|||||++..... .+ +.+...+.. ...|..+|+|+... . +..++.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 238889999653211 11 122222211 12355678877642 1 222233335689999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.+..... ..+ +++...|++.+.|..-.+.
T Consensus 280 ~~~~~~~-~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGL-ELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 8754322 122 4566778888888766444
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0013 Score=78.11 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
..-+.|+|.+|+|||+||+++++... +.+.. .++|++. .++..++...+... ..++ +++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 44589999999999999999998532 11222 3556643 34555555554321 1222 3333333
Q ss_pred ccEEEEeccccccC-hhhH-hhhcccccc-CCCCcEEEEEcc-chH--------HHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 296 KKFLLVLDDVWNEN-YNDW-VDMSRPLEA-GAPGSKIIVTTR-NQE--------VVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 296 kr~LlVlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
+.-+|++||++... ...+ +.+...+.. ...|..||+||. .+. +..++....++++++.+.++-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999996431 1111 122222211 123457888875 321 12223344578999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+.+..... ..+ +++..-|++.+.|.--.+.
T Consensus 274 ~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 274 KMLEIEHG-ELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhcCC-CCC---HHHHHHHHhccccCHHHHH
Confidence 88743221 222 3567778888888654444
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.51 E-value=0.00072 Score=86.25 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=84.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---ccccc-CcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHF-DLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. +. ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 368999999999999885432 23456999999999999999987431 11111 334442 11 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEeccccccC---------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNEN---------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
.. ... ..+.++.+..+-+.+ +.++.+|++|++..-. .+.-+.+...+. .| -++|-+|.
T Consensus 251 ----a~---~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 251 ----AG---TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred ----hh---ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 00 000 012222222222222 3457899999996321 111122222222 23 34555554
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.... ......++++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4222111 1123578999999999999998654
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.003 Score=71.17 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=113.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-------------cccCcEEEEEec
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-------------DHFDLKAWTCVS 256 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~f~~~~wv~~~ 256 (1416)
.+++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-.. .......|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999985542 24788999999999999998887642111 112233444321
Q ss_pred CCcCHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 257 NDFDVIRLTKTILRCIT--KQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 257 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
...+-..+...-++..+ ......-.++++ +.+.+.+ .+++-++|+|+++..+....+.++..+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 001111222332 2233333 3567799999998776677777777775443 3455
Q ss_pred EEEc-cchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IVTT-RNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 ivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|++| +...+.... .....+++.++++++..+.+.+...... .. .....++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LN----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---ch----hHHHHHHHHcCCCHHHHHHHH
Confidence 5444 444433332 2336799999999999999988742111 01 113468999999997665433
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.004 Score=73.74 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.|+|+.|+|||+||+++++.... ....+++++. ..+...+...+... . ...+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456889999999999999999985322 2233455542 33444444444321 1 122344333 3
Q ss_pred cEEEEeccccccChhhH--hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENYNDW--VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-++++||+.......| +.+...+.. ...|..||+||... .+..++.....+.+.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888899855321111 122222211 11355788888542 2223334446789999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
++-.... ..+ +++..-|++.+.|.
T Consensus 283 k~~~~~~-~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI-RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCC
Confidence 8743321 222 34455566666644
No 151
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.44 E-value=2.7e-05 Score=92.91 Aligned_cols=196 Identities=24% Similarity=0.197 Sum_probs=110.3
Q ss_pred CccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEE
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNI 1046 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 1046 (1416)
.++.+++..|.+.. +-..+..+++|..|++.+|.+.........+++|++|++++|.+.+..+. ..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhhee
Confidence 44555555555433 22245667777777777776554322255667777777777775444333 24455667777
Q ss_pred ccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcccc
Q 000568 1047 AGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEV 1126 (1416)
Q Consensus 1047 ~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~ 1126 (1416)
++|. +..+.+ +..
T Consensus 148 ~~N~-i~~~~~-----------------------------------------------~~~------------------- 160 (414)
T KOG0531|consen 148 SGNL-ISDISG-----------------------------------------------LES------------------- 160 (414)
T ss_pred ccCc-chhccC-----------------------------------------------Ccc-------------------
Confidence 6632 111110 000
Q ss_pred CCCCCCccEEEEecCCchhhhH-HhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC-
Q 000568 1127 GNLPQSLKFLDVWECPKLESIA-ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK- 1204 (1416)
Q Consensus 1127 ~~l~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~- 1204 (1416)
+ .+|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|. +..+- +...++.
T Consensus 161 --l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~-i~~~~-~l~~~~~~ 232 (414)
T KOG0531|consen 161 --L-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK-ISKLE-GLNELVML 232 (414)
T ss_pred --c-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc-ceecc-CcccchhH
Confidence 1 367777788877765443 2 56777888888888876542 223334444444554332 22221 1111223
Q ss_pred -cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCC
Q 000568 1205 -LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1205 -L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
|+.+++++|++... +..+..+..+..|++.+|++....
T Consensus 233 ~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 233 HLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred HHHHHhcccCccccc-cccccccccccccchhhccccccc
Confidence 78888888877632 245666778888888888766553
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.44 E-value=0.0011 Score=84.97 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=84.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---c-ccCcEEE-EEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---D-HFDLKAW-TCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~w-v~~~~~~~~~~~ 264 (1416)
..+|||+.++.+++..|.... ..-+.++|.+|+||||+|+.++...... . -.+..+| +..+.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~----- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ----- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-----
Confidence 468999999999999885542 2345699999999999999998742111 1 1123333 2222100
Q ss_pred HHHHHHHhcCCCCCCCCH-HHHHHHHHHHh-ccccEEEEeccccccC-------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDL-NLLQEELNKQL-SRKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
.+... ..+. +.+...+.+.- .+++.+|++|++..-. ..+-..+..+.. ..| -++|-||.
T Consensus 256 --------ag~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT 324 (852)
T TIGR03345 256 --------AGASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATT 324 (852)
T ss_pred --------ccccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecC
Confidence 00000 0011 11122222221 2468999999985421 111111222222 233 46666666
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.... ......+.+++++.++..+++....
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 5332111 1223579999999999999975443
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.003 Score=71.54 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=65.7
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+++-++|+|+++.-+....+.+...+..-..++.+|+||.+. .+.... .....+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 344456779998877777888888776655677777777764 333222 22356999999999999988765311 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 223456789999999766544
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.42 E-value=0.002 Score=77.55 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=92.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccccc--CcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
...-+.|+|.+|+|||+||+++++.. ...+ ..+++++.. .+..++...+... ..+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 34568999999999999999999853 2332 234455432 2333444444221 122 233333
Q ss_pred ccccEEEEeccccccChhh-H-hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHH
Q 000568 294 SRKKFLLVLDDVWNENYND-W-VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 294 ~~kr~LlVlDdv~~~~~~~-~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 361 (1416)
+ +.-+|||||++...... + +.+...+.. ...|..||+|+... .+..++....++++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 23488999996532111 1 222222211 11345678877643 1223344446799999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 362 FTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 362 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+.+++..... ..+ +++..-|++.++|..-.+.
T Consensus 289 l~~~~~~~~~-~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGI-DLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHcCcCCCHHHHH
Confidence 9998753221 222 3567779999998776443
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00038 Score=68.28 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999854
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.00087 Score=86.59 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=84.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---ccccc-CcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHF-DLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 23456999999999999999987431 11111 344553 1 111111
Q ss_pred HHHHHHhcCCCCCCCCHHH-HHHHHHHHhccccEEEEeccccccC-------hhhHhhhccccccCCCCcEEEEEccchH
Q 000568 266 KTILRCITKQTIDDSDLNL-LQEELNKQLSRKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
.+.... .+.++ +...+.+.-..++.+|++|++..-- ..+...+..+.... ..-++|.+|...+
T Consensus 248 -------ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 111111 12222 2222222223568999999994210 00111222222111 1246666666554
Q ss_pred HHHh-------hCCCCeeeCCCCChhhHHHHHHHh
Q 000568 338 VVAI-------MGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 338 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
.... ......+.+...+.++...+++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 122356788888888888887643
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0068 Score=69.17 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCeeeeehhHH-HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 189 EAKVYGRETEK-KEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 189 ~~~~vGr~~~~-~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
+.-++|-.... ..+...+... .+.....+.|||..|.|||.|++++.+. ...+......+.++ .+....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHH
Confidence 44456654333 2333333322 2235788999999999999999999984 33334322233332 2233344
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-hhHh-hhcccccc-CCCCcEEEEEccch--------
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-NDWV-DMSRPLEA-GAPGSKIIVTTRNQ-------- 336 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~iivTtR~~-------- 336 (1416)
.+..+... -...+++.. .-=++++||++--.. +.|+ .+...+.. ...|-.||+|++..
T Consensus 158 ~v~a~~~~---------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 158 FVKALRDN---------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHHHhh---------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 44433321 123344444 334889999965211 1222 22222221 12344899999753
Q ss_pred -HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 337 -EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 337 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
.+..++...-++++.+++.+....++.+++....
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 3445555667899999999999999998774433
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0025 Score=76.51 Aligned_cols=161 Identities=11% Similarity=0.129 Sum_probs=92.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||.|++++++.......-..+++++. .++..++...+... .. ..+++.+++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~- 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE- 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc-
Confidence 345899999999999999999984321111123455543 33444444433211 11 223333333
Q ss_pred cEEEEeccccccCh-hhHh-hhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENY-NDWV-DMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
-=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-++.+...+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 24788899965422 2222 22222211 12356788888852 2334445567899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
++....- ..+ .++++-|++.+.+..-.+.
T Consensus 458 ka~~r~l-~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 458 KAVQEQL-NAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHhcCC-CCC---HHHHHHHHHhccCCHHHHH
Confidence 8754322 222 3566667777776644333
No 159
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=4.4e-05 Score=91.07 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEE
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 1210 (1416)
++|+.|++.+|.+..... .+..+++|++|++++|.+.... .+..++.|+.|++++|. +..+. ++..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCc-chhcc-CCccchhhhcccC
Confidence 366777777766654321 1556667777777777665532 34555666777776433 33332 2222566667777
Q ss_pred ccccCCCcCc-ccccCcCccceeeeecCCCCCCC
Q 000568 1211 SECERLEALP-RGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1211 ~~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
++|.+...-+ . +..+.+|+.+++++|.+..+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 7766653322 1 355666666777776555543
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.30 E-value=0.00021 Score=53.23 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.4
Q ss_pred CcccEEecCCCCchhhchHhhcccccCceeecCCcccccccc
Q 000568 628 YNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMP 669 (1416)
Q Consensus 628 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp 669 (1416)
++|++|++++| .+..+|..|++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47999999996 677899889999999999999998 76654
No 161
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=1.7e-05 Score=92.13 Aligned_cols=146 Identities=23% Similarity=0.325 Sum_probs=83.7
Q ss_pred CCccEEEEecCCchhhh-HHhhccCCcccEEeeccCCCcccccccccCC-CCcceeeec-----------cCCCcccccC
Q 000568 1131 QSLKFLDVWECPKLESI-AERLNNNTSLEVIDIGNCENLKILPSGLHNL-CQLQRISIW-----------CCGNLVSFSE 1197 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~L~-----------~~~~l~~~~~ 1197 (1416)
++++.|.+-.-+--+.. |-.+..+.+|+.|.+.+|.+... .++..+ ..|++|.-+ .|. ..+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascg--gd~~- 158 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCG--GDIS- 158 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhc--cccc-
Confidence 35666666554443332 55677888899999999886551 122111 123333211 011 1111
Q ss_pred CCCCCCCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCC
Q 000568 1198 GGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGG 1277 (1416)
Q Consensus 1198 ~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1277 (1416)
...++..|.+.+.+.|.+. .+..++.-++.|+.|+|++|.+..+. .+..+| .|++|||++|. +..++..+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-~LkhLDlsyN~-L~~vp~l~----- 228 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-KLKHLDLSYNC-LRHVPQLS----- 228 (1096)
T ss_pred cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-cccccccccch-hccccccc-----
Confidence 1223567777888877765 44566777888888888888877765 445564 78888887753 44444322
Q ss_pred CCCCCCcceEEEecc
Q 000568 1278 LNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1278 l~~l~~L~~L~l~~~ 1292 (1416)
..++. |+.|.+++|
T Consensus 229 ~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 229 MVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhhhh-heeeeeccc
Confidence 23333 666666664
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.25 E-value=0.001 Score=77.69 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=87.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789999999888877421110 1123456889999999999999999984 33333 1121111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hh---hHhhhcccccc--CCCC
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YN---DWVDMSRPLEA--GAPG 326 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~~g 326 (1416)
+. ....+ .....+...+.....+.+.+|+||+++... .. ....+...+.. ...+
T Consensus 253 -L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 11100 111112222333334567899999985320 00 01111111111 1235
Q ss_pred cEEEEEccchHHHHh-h-C---CCCeeeCCCCChhhHHHHHHHhhc
Q 000568 327 SKIIVTTRNQEVVAI-M-G---TAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 327 s~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
.+||+||...+.... + . ....++++..+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 235689999999999999987763
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0024 Score=80.24 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=86.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---cc-cCcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---DH-FDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++...... .. .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~-- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS-- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH--
Confidence 358999999999999886532 2334689999999999999998742111 11 13444421 1111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc--------ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE--------NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
++ .+... ..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...
T Consensus 253 --ll---aG~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 253 --LL---AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --Hh---cccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 11 01100 112222222222222 345689999999531 112222233333222 233555555544
Q ss_pred HHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 337 EVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 337 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+.... .+-...+.++.++.++..+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33211 1222579999999999999988654
No 164
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.012 Score=69.43 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=68.3
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+-+|.++-+++|.+++.-....+.-+.+++..+|++|+|||.+|+.++... ...| +-++++.-.|+.++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhh----
Confidence 45678999999999999865444355678999999999999999999999843 2223 23455554444333
Q ss_pred HHHhcCC--CCCCCCHHHHHHHHHHHhccccEEEEeccccc
Q 000568 269 LRCITKQ--TIDDSDLNLLQEELNKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 269 l~~l~~~--~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 307 (1416)
.+. ..-..-...+++.+++. +...=|+.+|.|+.
T Consensus 481 ----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 111 11112233444444443 44567899999964
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.0018 Score=64.60 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc-
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK- 296 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k- 296 (1416)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998532221 23555554443222111111 111111111222222233333333433
Q ss_pred cEEEEecccccc
Q 000568 297 KFLLVLDDVWNE 308 (1416)
Q Consensus 297 r~LlVlDdv~~~ 308 (1416)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999765
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00036 Score=86.53 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred hhcccCCCccccceeeccCCCcc--ccCccccc-cCcccEEecCCCCc-hhhchHhhcccccCceeecCCccccccccCC
Q 000568 596 HQLLKLQQLRVFTVLNLSRTNIR--NLPESITK-LYNLHTLLLEDCDR-LKTLCADIGNLIKLHHLKNSNTISLQEMPLR 671 (1416)
Q Consensus 596 ~~~~~l~~L~~L~~L~Ls~~~i~--~lp~~i~~-L~~L~~L~L~~~~~-~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 671 (1416)
+.+.+-..-.+|++||+++...- .-|..++. |+.|++|.+++=.. ..++-.-..++++|+.||+++++ +..+ .+
T Consensus 113 ~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G 190 (699)
T KOG3665|consen 113 KDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG 190 (699)
T ss_pred HHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH
Confidence 33333344567889999986432 23556665 99999999988322 12334456789999999999998 8877 78
Q ss_pred cccccCCccc
Q 000568 672 FGKLTCLQTL 681 (1416)
Q Consensus 672 i~~L~~L~~L 681 (1416)
|++|++||+|
T Consensus 191 IS~LknLq~L 200 (699)
T KOG3665|consen 191 ISRLKNLQVL 200 (699)
T ss_pred HhccccHHHH
Confidence 9999999999
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.015 Score=65.31 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc----------------CcEEEEEecCCc
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF----------------DLKAWTCVSNDF 259 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----------------~~~~wv~~~~~~ 259 (1416)
+...+++...+..+. -...+.++|+.|+||+++|..++...-..... .-..|+......
T Consensus 10 ~~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 10 QRAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 344566666664332 24578899999999999999887643222111 111222100000
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEcc
Q 000568 260 DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
. +........++++.+ +.+.+ .+++-++|+|+++..+...-+.++..+..-..++.+|++|.
T Consensus 85 ~------------~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 85 T------------GDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred c------------cccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 0 000000011222222 22222 24567999999987766666777777766556777777666
Q ss_pred ch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 335 NQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 335 ~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.. .+.... .--..+.+.+++.+++.+.+.... . . ...+..++..++|.|+.+..+.
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 53 333222 223568899999999988887542 1 1 1235568999999998775444
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.16 E-value=0.0018 Score=78.97 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=40.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++|.+..++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999865432 2233468999999999999999999874
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.0065 Score=69.46 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=90.5
Q ss_pred eee-ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYG-RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
++| .+..++.+...+.... -.....++|+.|+||||+|+.+.+..-........ .+... ...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc
Confidence 556 6667777777774432 35677899999999999999987643211101000 00000 00000000
Q ss_pred HhcCC------CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHH
Q 000568 271 CITKQ------TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVV 339 (1416)
Q Consensus 271 ~l~~~------~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 339 (1416)
.-..+ .......+++.+.+... ..+++=++|+|+++.-+....+.+...+..-..++.+|++|... .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 00000 00011223332222211 23455679999997776667777888877655677777777653 333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHh
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
... .....+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 23467999999999998888654
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.15 E-value=0.0042 Score=80.64 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=83.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEE-EecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWT-CVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv-~~~~~~~~~~~ 264 (1416)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.++....-... ....+|. .++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 358999999999999985432 244558999999999999998874311100 1223332 211 11
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhc-cccEEEEeccccccC-------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDLNL-LQEELNKQLS-RKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
. . +.... .+.+. +...+.+.-+ +++.+|++|++..-. ..+...+..+.. ..| -++|.+|.
T Consensus 241 ~----a---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt 310 (852)
T TIGR03346 241 I----A---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATT 310 (852)
T ss_pred h----h---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCc
Confidence 1 0 00000 11222 2222222212 468999999995321 011112222222 223 35555555
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.-.. ......+.++..+.++...++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4433211 1223568899999999999887654
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00017 Score=75.24 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCcceEEEccccCCCc-CcccccCcCccceeeeecCCCCCCCC-CCCCCCCCCcceeEecCCCCCcccccccCCCCCCC
Q 000568 1202 CAKLTRLEISECERLEA-LPRGLRNLTCLQHLTIGDVLSPERDP-EDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLN 1279 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~~-~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 1279 (1416)
+|++..+-+..|++-.. .......+|.+-.|+|+.|+|..-.. ..+.++ ++|.-|.+.++|...++-......--+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccccccCCcceEEEEe
Confidence 46788888888876532 23345556777788888887755433 234455 4888888888876665421100001246
Q ss_pred CCCCcceEEE
Q 000568 1280 RFSSLQQLRI 1289 (1416)
Q Consensus 1280 ~l~~L~~L~l 1289 (1416)
.|++++.|+=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 6777776643
No 172
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.016 Score=60.44 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=103.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe-cCCcCHHHHHHHHHHHhcCCCCCCCCHH----HHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV-SNDFDVIRLTKTILRCITKQTIDDSDLN----LLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~l~ 290 (1416)
+.+++.|+|.-|.|||.+++++....- + +.++-+.+ ....+...+...++..+..+. ..... +..+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 346999999999999999995544221 1 12222333 334567788888888887632 22333 3333333
Q ss_pred HHh-cccc-EEEEeccccccChhhHhhhccccccCCCCc---EEEEEcc----ch---HHHHhhC--CCCeeeCCCCChh
Q 000568 291 KQL-SRKK-FLLVLDDVWNENYNDWVDMSRPLEAGAPGS---KIIVTTR----NQ---EVVAIMG--TAPAYQLKRLSTD 356 (1416)
Q Consensus 291 ~~l-~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs---~iivTtR----~~---~v~~~~~--~~~~~~l~~L~~~ 356 (1416)
+.. +++| ..+++||..+...+..+.++-...-...++ +|+..-. .+ .+..... ..-.|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 899999997765555554433221111111 2322211 10 1111111 1123899999999
Q ss_pred hHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 357 DCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 357 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
+...+++.+..+...+.+-. -.+....|..+..|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHH
Confidence 98888887765443221111 1234456999999999999877644
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.11 E-value=0.0028 Score=73.75 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=95.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------H
Confidence 4688999888888876632100 011345678899999999999999999842 2222 12211 1
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhh----Hhhhcccccc--CCCC
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YND----WVDMSRPLEA--GAPG 326 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~~~~~l~~--~~~g 326 (1416)
.+ .....+ .....+...+.......+.+|++|+++..- ... +..+...+.. ...+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111110 111122223333334568899999986420 001 1112222211 2235
Q ss_pred cEEEEEccchHHHH-h-hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 327 SKIIVTTRNQEVVA-I-MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 327 s~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
..||+||...+... . .. ....+.++..+.++..++|........ ....-++.+ +++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~~----la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLED----FVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHHH----HHHHcCCCC
Confidence 67888887654322 1 12 235688888888888888876653222 112223333 666666653
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.017 Score=64.68 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ- 275 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~- 275 (1416)
...+++.+.+..+ .-...+-+.|+.|+||+++|+.++...-....-+. .++.. ..-+.+...-..+
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~ 76 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCE
Confidence 3455666665433 23567889999999999999998764321110000 00000 0000110000000
Q ss_pred -------CCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh
Q 000568 276 -------TIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM 342 (1416)
Q Consensus 276 -------~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~ 342 (1416)
....-.++++. .+.+.+ .+++=++|+|+++..+....+.+...+..-..++.+|++|.+. .+....
T Consensus 77 ~~i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 77 HVIKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred EEEecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00111233332 222222 2445689999998877778888888887666677776666653 444332
Q ss_pred -CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 343 -GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 343 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
..-..+.+.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~~---~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQGI---T---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcCC---c---------hHHHHHHHcCCCHHHHHHH
Confidence 2335789999999999998876421 0 1245789999999977654
No 175
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.08 E-value=0.011 Score=76.22 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=39.1
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.+++|.+..+++|.+++......+....+++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999988764321112223458999999999999999999984
No 176
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.08 E-value=0.0065 Score=72.20 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=88.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHccccccc---ccCcEEEEEecCCc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD---HFDLKAWTCVSNDF 259 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 259 (1416)
.++.|.+..++++.+.+...-.. +-...+-+.++|++|+|||++|+++++...... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45788999999988876421100 112345688999999999999999998532211 1123344444331
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccC-------hhhH-----hhhcccccc--CC
Q 000568 260 DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNEN-------YNDW-----VDMSRPLEA--GA 324 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~~-----~~~~~~l~~--~~ 324 (1416)
.+ +....+.. ......+....++. -.+++.+|+||+++..- ..+. ..+...+.. ..
T Consensus 261 ---eL----l~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 11000000 00011111222221 13468999999996420 0111 122222221 11
Q ss_pred CCcEEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 325 PGSKIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
.+..||.||...+... .+ .....++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445566665543321 11 223468999999999999999886
No 177
>PRK08116 hypothetical protein; Validated
Probab=97.07 E-value=0.0018 Score=71.31 Aligned_cols=104 Identities=24% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.++|.+|+|||.||.++++.... .-..+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45889999999999999999985422 223455664 3344455544433211 111222 223334334
Q ss_pred EEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
||||||+......+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995543345543 2222221 12456799999754
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.04 E-value=0.006 Score=78.78 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=37.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999985532 245569999999999999999874
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.02 E-value=0.0086 Score=60.46 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=77.7
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc------------------ccCcEEEEEe
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD------------------HFDLKAWTCV 255 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 255 (1416)
|.+...+.+.+.+..+. -...+.++|+.|+||+++|..+++..-... ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777775432 245688999999999999999887432111 1222333332
Q ss_pred cCC---cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEE
Q 000568 256 SND---FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVT 332 (1416)
Q Consensus 256 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT 332 (1416)
... ..++++ +++...+.... ..+++=++|+||++....+.+..++..+.....++++|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 222221 13333222111 1245668999999988888889999888877778898888
Q ss_pred ccchH-HHHhh-CCCCeeeCCCC
Q 000568 333 TRNQE-VVAIM-GTAPAYQLKRL 353 (1416)
Q Consensus 333 tR~~~-v~~~~-~~~~~~~l~~L 353 (1416)
|++.. +.... .-...+.+.++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE---
T ss_pred ECChHHChHHHHhhceEEecCCC
Confidence 88753 32222 22234555544
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.025 Score=63.49 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC---c-----EEEEEecCCcCHHHHHHHHH
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD---L-----KAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~il 269 (1416)
.-+.+...+..+. -...+.+.|+.|+||+++|+.++...-...... | .-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 3455666664332 245777999999999999999987432211110 0 000001111111000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~- 342 (1416)
.......-.++++.+ +.+.+ .+++=++|+|+++..+....+.++..+..-..++.+|++|.+. .+....
T Consensus 80 ---~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000001112333322 22222 3556688899998877777888888887666677777777654 333332
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
..-..+.+.++++++..+.+...... . ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 22357999999999999888876411 1 112456788999999644
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.96 E-value=0.0075 Score=76.56 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=88.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+.+|.++.+++|.+++............++.++|++|+||||+|+.++... ...| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEEcCCCCCHHHhccch
Confidence 45689999999999998863221122345689999999999999999998732 2222 223333333332221100
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhh----Hhhhcccccc---------------CCCCcEE
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYND----WVDMSRPLEA---------------GAPGSKI 329 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~i 329 (1416)
+. ........+...+.+. ....-+|+||.++...... ...+...+.+ .-.+.-+
T Consensus 396 -~~-----~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RT-----YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hc-----cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 0111112233333332 2234478899996543211 1233322221 1133444
Q ss_pred EEEccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 330 IVTTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 330 ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|.|+....+...+ .-..++++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5566543332222 223568888999888877776664
No 182
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.96 E-value=0.026 Score=66.96 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=127.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---cccccC--cEEEEEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHFD--LKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f~--~~~wv~~~~~~~~~~~ 264 (1416)
..+-+|+.|..+|...+..--. .++..+.+.|.|.+|.|||..+..|.+... .++.-. ..+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3466899999999888864332 123456999999999999999999998532 112222 2445555555678899
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----cccEEEEeccccccChhhHhhhccccc-cCCCCcEEEEEccch--
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLS-----RKKFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIVTTRNQ-- 336 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iivTtR~~-- 336 (1416)
...|..++.+... ......+.+..++. .+..++++|+++.--....+.+...|. +..++||++|.+=..
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999987643 33444555666654 346888999884320011122333333 355788876644321
Q ss_pred H---------HHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 337 E---------VVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 337 ~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+ |...+ +...+...+.+.++-.++...+..+.. .-.+...+-+|++|+.-.|-.-.|+.+.-++.
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 11111 124577788888888888777764432 22334455566677766666666666555543
No 183
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.89 E-value=0.00013 Score=66.99 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=81.5
Q ss_pred CccEEEEecCCchh--hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEE
Q 000568 1132 SLKFLDVWECPKLE--SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLE 1209 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 1209 (1416)
.+..++|++|.+.. ..+..+.....|...+|++|.+....+..-..++-+++|+++ ++.+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHHHhhhHHhhhcc
Confidence 46778888888763 334556777788888999998766554444566788888887 567778888877788899999
Q ss_pred EccccCCCcCcccccCcCccceeeeecCCCCCCC
Q 000568 1210 ISECERLEALPRGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1210 l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
++.|++. ..|..+..+.+|..|+..+|.+..+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence 9888876 44566666888888888888655553
No 184
>PRK10536 hypothetical protein; Provisional
Probab=96.88 E-value=0.0062 Score=64.68 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE----ecCCc-----C
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC----VSNDF-----D 260 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~~-----~ 260 (1416)
..+.+|......+..++... .++.+.|++|.|||+||.++..+.-..+.|+.++... +++.. +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34677888888888888442 4899999999999999998887432234454333321 11100 1
Q ss_pred HHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhccccE---EEEeccccccChhhHhhhccccccCCC
Q 000568 261 VIRL----TKTILRCITKQTIDDSDLNLLQE--------ELNKQLSRKKF---LLVLDDVWNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 261 ~~~~----~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~~~~~l~~~~~ 325 (1416)
..+- ++-+...+..- ......+.... .=-.+++++.+ +||+|.+...+..+...+... .+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~-~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRR-LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCC
Confidence 1111 11111111100 00001111100 00134556644 999999987765555555443 457
Q ss_pred CcEEEEEccchH
Q 000568 326 GSKIIVTTRNQE 337 (1416)
Q Consensus 326 gs~iivTtR~~~ 337 (1416)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 899999866543
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.87 E-value=0.004 Score=62.86 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=36.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++||-++.++++.-.-.+ +..+-+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 4689999999988776643 35678899999999999988877763
No 186
>PRK08118 topology modulation protein; Reviewed
Probab=96.86 E-value=0.00059 Score=69.29 Aligned_cols=34 Identities=38% Similarity=0.639 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAW 252 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 252 (1416)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865444 45777776
No 187
>CHL00176 ftsH cell division protein; Validated
Probab=96.86 E-value=0.0092 Score=73.64 Aligned_cols=177 Identities=14% Similarity=0.232 Sum_probs=95.5
Q ss_pred CeeeeehhHHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELL---LRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.+++|.++.++++.+.+ ..... -+....+-+.++|++|+|||++|+.++... . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 46888877666655543 22110 011234568999999999999999998742 1 122333211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhH----hhhcccccc--CCCCc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDW----VDMSRPLEA--GAPGS 327 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~~~~~l~~--~~~gs 327 (1416)
+... .. ......+...+.+.....+.+|++||++.-. ...+ ..+...+.. ...+-
T Consensus 252 f~~~----~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEM----FV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH----hh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1100 00 0111223334455556678999999995421 1112 222222211 23455
Q ss_pred EEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCC
Q 000568 328 KIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNG 391 (1416)
Q Consensus 328 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 391 (1416)
.||.||...+... .+ .....+.++..+.++-.++++.++.... ... ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cch----hHHHHHHHhcCCC
Confidence 6777776644322 11 1235688888899988889988774311 111 2234568888877
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.84 E-value=0.025 Score=62.55 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
-|.+.|++|+|||++|+.+++. ... ..+++++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHH
Confidence 4568999999999999999862 221 2345555555444443
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.016 Score=63.22 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=104.1
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|-++.+++|.+...-+-.. +-..++-|.+||++|.|||-||++|++. ....| +.+... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----H
Confidence 4557788888888776432110 2234677889999999999999999983 44333 433331 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-cccEEEEecccccc-----------Chh---hHhhhccccccC--CCC
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLS-RKKFLLVLDDVWNE-----------NYN---DWVDMSRPLEAG--APG 326 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~---~~~~~~~~l~~~--~~g 326 (1416)
+ .+...++ ...+++.+-+.-+ .....|.+|.++.. +.+ ..-+++..+..+ ...
T Consensus 221 l----VqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 L----VQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred H----HHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2 2222111 1223333333333 45789999988541 111 111222223222 235
Q ss_pred cEEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh----HHHH
Q 000568 327 SKIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP----LAAK 397 (1416)
Q Consensus 327 s~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP----Lai~ 397 (1416)
-|||..|-..++..- +. -.+.++++.-+.+.-.++|.-++-.- .....-+++. +++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e~----la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLEL----LARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHHH----HHHhcCCCchHHHHHHH
Confidence 688888776555422 22 23568888555666677888776332 2223334555 777777765 4555
Q ss_pred HHHHHhc
Q 000568 398 TLGGLLR 404 (1416)
Q Consensus 398 ~~~~~l~ 404 (1416)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 6666653
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.80 E-value=0.016 Score=70.72 Aligned_cols=184 Identities=12% Similarity=0.172 Sum_probs=94.9
Q ss_pred CeeeeehhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLL---RDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.+++|.+..++++.+++. .... .+....+-+.++|++|+|||++|+.++... ... ++.++.. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 467888877766655443 1100 012234558899999999999999998743 212 2222211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhHhh----hccccc--cCCCCc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSRPLE--AGAPGS 327 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~--~~~~gs 327 (1416)
+.. ... ......+...+.......+.+|++|+++.-. ...+.. +...+. ....+-
T Consensus 124 ~~~----~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 110 0112233334444444567899999995421 011111 111111 122344
Q ss_pred EEEEEccchHHH-Hhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC-hHHHHH
Q 000568 328 KIIVTTRNQEVV-AIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL-PLAAKT 398 (1416)
Q Consensus 328 ~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~ 398 (1416)
.||.||...+.. ..+ .....+.++..+.++-.++|..+...... ..... ...+++.+.|. +-.|..
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLAN 266 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHH
Confidence 566667654321 111 22356888988888888888877633211 11122 33588888774 333433
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0044 Score=75.98 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=83.7
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
...++|.+..++.+.+.+...... ......+....|+.|||||.||++++... -+.=+..+-++.|+-.. -
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L--fg~e~aliR~DMSEy~E----k 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL--FGDEQALIRIDMSEYME----K 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh--cCCCccceeechHHHHH----H
Confidence 356899999999999988754331 23346678889999999999999998732 11003344444444211 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
..+.+-++.+.. --.-++ .-.+.+..+.++| +|.||.|...+.+-++.+...|.++. +.+-||.||
T Consensus 564 HsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 564 HSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 122223333221 111111 2235555667777 88899998888777777777665532 334556666
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
--
T Consensus 642 N~ 643 (786)
T COG0542 642 NA 643 (786)
T ss_pred cc
Confidence 53
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.011 Score=70.41 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=94.0
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+-+|.++-+++|+++|.-......-+.+++.+||++|+|||+|++.++.. ....| +-++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHh----
Confidence 4567899999999999986433223345689999999999999999999984 33333 33444444443322
Q ss_pred HHHhcCC--CCCCCCHHHHHHHHHHHhccccEEEEeccccccChh----hHhhhccccccCC-------------CCcEE
Q 000568 269 LRCITKQ--TIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN----DWVDMSRPLEAGA-------------PGSKI 329 (1416)
Q Consensus 269 l~~l~~~--~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~l~~~~-------------~gs~i 329 (1416)
.+. ..-..-...+++.+++. +.+.=+++||.++....+ --.+++..|.+.. -=|.|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111 11112223344444443 456779999999653211 1112222221100 11444
Q ss_pred E-EEccch-H-HH-HhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 330 I-VTTRNQ-E-VV-AIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 330 i-vTtR~~-~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+ |||-+. + +. ..+....++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 444432 2 21 222345789999999999887776665
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.015 Score=68.08 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=75.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF 298 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 298 (1416)
++.|.|+-++||||+++.+.... .+. .+++...+...-..-+.+... .+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 99999999999999997776532 111 455544332211111111111 11111122778
Q ss_pred EEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH-----Hhh-CCCCeeeCCCCChhhHHHHH
Q 000568 299 LLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-----AIM-GTAPAYQLKRLSTDDCLSVF 362 (1416)
Q Consensus 299 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf 362 (1416)
.|+||.|... .+|......+.+.+.. +|++|+-+..+. ... |....+++.||+-.|...+-
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999766 7899988888776655 888888875432 222 23457899999999886654
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.051 Score=62.00 Aligned_cols=149 Identities=18% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
....-+.+.|++|+|||+||.+++. ...|..+--++...-.... +......+...+...-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhhc
Confidence 3466778899999999999999986 3456544433221111110 11112233344455556
Q ss_pred cccEEEEeccccccChhhHhhhc---------------cccccCCCCcEEEEEccchHHHHhhCC----CCeeeCCCCCh
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMS---------------RPLEAGAPGSKIIVTTRNQEVVAIMGT----APAYQLKRLST 355 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~---------------~~l~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~~ 355 (1416)
..--.||+||+..- -+|-.+. ...|+.+..--|+-||....|...++- ...+.++.++.
T Consensus 597 S~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 67789999999442 3333222 122222222234557777888887753 35789999988
Q ss_pred -hhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhc
Q 000568 356 -DDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKC 389 (1416)
Q Consensus 356 -~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 389 (1416)
++..+.++..- .-.+.+.+.++++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 67777776543 122344566666777766
No 195
>PRK07261 topology modulation protein; Provisional
Probab=96.69 E-value=0.0044 Score=63.31 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.|.|+|++|+||||||+++....... -+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999998643221 13455555221 112233455555666666666
Q ss_pred EEEEeccccc
Q 000568 298 FLLVLDDVWN 307 (1416)
Q Consensus 298 ~LlVlDdv~~ 307 (1416)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 196
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.66 E-value=0.0029 Score=66.89 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV 255 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 255 (1416)
-.++|+|..|+||||++..+... ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36779999999999999999874 5667877766644
No 197
>PRK08181 transposase; Validated
Probab=96.64 E-value=0.0035 Score=68.52 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.-+.++|++|+|||.||..+.+.. ......+.|+++ .++...+..... ....+.....+ .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 458999999999999999998742 222233555543 344444433211 11222222222 123
Q ss_pred EEEEeccccccChhhHh--hhccccccCCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWV--DMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~--~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
=||||||+......+|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654333332 2222222211123688888864
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.63 E-value=0.0019 Score=72.19 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=42.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+++|.++.++++++++.......+..-+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976543223456899999999999999999998754
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.078 Score=60.37 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc---CcE-----EEEEecCCcCHHHHHHHH
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF---DLK-----AWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i 268 (1416)
..-+++...+..+ .-...+.+.|+.|+||+++|..++...-....- .|. .++..+..+|+..+
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3455666666433 235678899999999999999887643221110 000 00111111111100
Q ss_pred HHHhcCCCC-CCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHh
Q 000568 269 LRCITKQTI-DDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAI 341 (1416)
Q Consensus 269 l~~l~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~ 341 (1416)
..... ..-.++++.+ +.+.+ .+++=++|+|+++.-+....+.++..+..-..++.+|.+|.+ ..+...
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 0122333332 22222 356679999999887767777888888665567777666665 334433
Q ss_pred h-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 342 M-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 342 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
. .-...+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 2 223568999999999988886542 1 11 1235678999999996544
No 200
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.61 E-value=0.03 Score=63.69 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=120.6
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHHcccccccccCcEEEEEecCC---cCHHHHHHHHHH
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTILR 270 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 270 (1416)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++..+.+. +..+++.+- .+-...++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997654 379999999999999999 777765322 555554332 223344555555
Q ss_pred HhcC-----------------------CCCC-CCCH-HHHHHH-------HHH-------------------Hhc---cc
Q 000568 271 CITK-----------------------QTID-DSDL-NLLQEE-------LNK-------------------QLS---RK 296 (1416)
Q Consensus 271 ~l~~-----------------------~~~~-~~~~-~~~~~~-------l~~-------------------~l~---~k 296 (1416)
++|- +... ..+. .++... +++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 4442 1110 1111 122211 111 010 12
Q ss_pred cEEEEeccccccC---------hhhHhhhccccccCCCCcEEEEEccchHHHHhhC------CCCeeeCCCCChhhHHHH
Q 000568 297 KFLLVLDDVWNEN---------YNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG------TAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 297 r~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~l 361 (1416)
|=+||+|+.-... ..+|..... ..+-.+||++|-+......+. ..+.+.|...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985431 134544322 224568999998754443332 235789999999999999
Q ss_pred HHHhhcCCCCC------------CC----ChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCc
Q 000568 362 FTQHSLDSRDF------------SS----NKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGP 409 (1416)
Q Consensus 362 f~~~~~~~~~~------------~~----~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~ 409 (1416)
...+....... .. ......-....++.+||==.-+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 99887433110 00 01233445568899999999999999999876553
No 201
>PRK12377 putative replication protein; Provisional
Probab=96.61 E-value=0.0023 Score=68.96 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|.+|+|||+||.++++... .....++++++. +++..+-..... ....... + +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---H-HHh-cC
Confidence 35789999999999999999998543 233345666553 333433333211 1111222 2 222 34
Q ss_pred cEEEEeccccccChhhHhh--hccccccC-CCCcEEEEEccc
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEAG-APGSKIIVTTRN 335 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 335 (1416)
-=||||||+.......|.. +...+... ...--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995543344542 22222221 123346777764
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.57 E-value=0.0064 Score=68.14 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
+|....+...+++..-. .+...+-+.++|..|+|||.||.++++... +.. ..+.++++. .++.++...+.
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHh
Confidence 45444555555554322 112346789999999999999999998542 222 235555543 34444444432
Q ss_pred CCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhh--hcccc-ccC-CCCcEEEEEccch
Q 000568 274 KQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVD--MSRPL-EAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~iivTtR~~ 336 (1416)
. .+..+. +.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||-..
T Consensus 205 ~-----~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 D-----GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred c-----CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1 122222 222 2 234589999997766667754 44433 211 2355788888753
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.55 E-value=0.0077 Score=77.04 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=70.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.++... +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 5689999999999888864321 011234578899999999999999998743 2234555554422211
Q ss_pred HHHHHhcCCC-C-CCCCHHHHHHHHHHHhccc-cEEEEeccccccChhhHhhhcccccc
Q 000568 267 TILRCITKQT-I-DDSDLNLLQEELNKQLSRK-KFLLVLDDVWNENYNDWVDMSRPLEA 322 (1416)
Q Consensus 267 ~il~~l~~~~-~-~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~l~~ 322 (1416)
.+...++... . ....... +.+.++.+ .-+++||+++..+.+.++.+...+..
T Consensus 525 ~~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred cHHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111122211 1 1111222 23333333 45999999988777777776665543
No 204
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.55 E-value=0.011 Score=76.99 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=78.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+.... ...-...+.++.+.-.....+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccchH-H
Confidence 46899999999999988753210 11234678899999999999999998742 111123344444432221111 1
Q ss_pred HHHHHhcCCCC--CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 267 TILRCITKQTI--DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 267 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
.-++.... .......+...++. ...-+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 642 ---~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 ---RLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred ---HhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11221110 11111222222222 233489999998887777777776664331 334477777
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 75
No 205
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.54 E-value=0.0026 Score=65.18 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|.+|+|||.||..+.+.... .. ..+.|+.+ .+++..+ .... .....+.... .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g-~~v~f~~~------~~L~~~l----~~~~-~~~~~~~~~~----~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KG-YSVLFITA------SDLLDEL----KQSR-SDGSYEELLK----RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHH----HCCH-CCTTHCHHHH----HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CC-cceeEeec------Cceeccc----cccc-cccchhhhcC----ccc-c
Confidence 356899999999999999999874322 22 23566643 3333333 2221 1122222222 222 2
Q ss_pred cEEEEeccccccChhhHhh--hccccccC-CCCcEEEEEccch
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~~ 336 (1416)
-=||||||+-.....+|.. +...+... ..+ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899997655445543 21111111 123 688888864
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.043 Score=62.16 Aligned_cols=94 Identities=14% Similarity=0.237 Sum_probs=64.5
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+++=++|+|+++..+...++.++..+..-..++.+|++|.+ ..+.... .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999888878888888888766667766655554 4444332 223679999999999999887752 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
++ ...++..++|.|+.+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1225778899997655443
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.51 E-value=0.0067 Score=78.01 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred CCeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
...++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.++... -+.....+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhh----
Confidence 35789999999999998864311 122345688999999999999999887642 111122233333321111
Q ss_pred HHHHHHhcCCCC--CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEE
Q 000568 266 KTILRCITKQTI--DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVT 332 (1416)
Q Consensus 266 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivT 332 (1416)
..+.+-++.... .......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111222111 11111223333332 445699999998777666766665554432 45566777
Q ss_pred ccc
Q 000568 333 TRN 335 (1416)
Q Consensus 333 tR~ 335 (1416)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 664
No 208
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.50 E-value=0.0069 Score=70.43 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=36.5
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 4889999999999888665 35789999999999999999874
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.50 E-value=0.0089 Score=61.85 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=64.6
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCH-------H--
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDV-------I-- 262 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~-------~-- 262 (1416)
.+..+....++.|.. ..++.+.|++|.|||.||.+...+.-..+.|+.++++.-.- ..+. .
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 355666677777763 35899999999999999988877654557888877764211 1110 0
Q ss_pred -----HHHHHHHHHhcCCCCCCCCHHHHHHHH------HHHhccc---cEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 263 -----RLTKTILRCITKQTIDDSDLNLLQEEL------NKQLSRK---KFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 263 -----~~~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
.-+.+.+..+. .....+.+...= -.+++|+ .-.||+|++.+.+..++..+... .+.|||
T Consensus 76 ~~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~sk 148 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSK 148 (205)
T ss_dssp --TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-E
T ss_pred HHHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcE
Confidence 01111111111 111222222100 0223444 46999999988777777776554 357899
Q ss_pred EEEEccchH
Q 000568 329 IIVTTRNQE 337 (1416)
Q Consensus 329 iivTtR~~~ 337 (1416)
||++=-..+
T Consensus 149 ii~~GD~~Q 157 (205)
T PF02562_consen 149 IIITGDPSQ 157 (205)
T ss_dssp EEEEE----
T ss_pred EEEecCcee
Confidence 999866543
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.0035 Score=65.31 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTI---DDSDLNLLQEELNKQ 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 292 (1416)
++|+.++|+.|+||||.+.+++.....+ -..+..++... .....+.++..++.++.+.. ...+..++.....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999988888754333 33466666543 34566777888888876532 222333333322233
Q ss_pred hcccc-EEEEeccc
Q 000568 293 LSRKK-FLLVLDDV 305 (1416)
Q Consensus 293 l~~kr-~LlVlDdv 305 (1416)
++.++ =+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33333 47777765
No 211
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.42 E-value=0.062 Score=55.24 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=64.9
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
++-..++|-|..++.+++-...-- .+...--|.+||.-|+||++|++++.+.. .+..-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEY--ADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHH--HhcCCe--EEEEcHH--------
Confidence 344578999999998887543211 11234567899999999999999999843 222211 2333221
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA 322 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~ 322 (1416)
+..+...+.+.++. ..+||.|..||..-+ ....++.++..+..
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11112222333332 367999999999433 33556666666654
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.42 E-value=0.014 Score=75.52 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.++.... ..-...+.++++.-.. ...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-KHS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-hhh--
Confidence 4689999999999988864321 0122235788999999999999999986321 1112234444443211 111
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHHHHHhcc-ccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 267 TILRCITKQTI-DDSDLNLLQEELNKQLSR-KKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 267 ~il~~l~~~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
+.+-++.... ...+.. ..+.+.++. ..-+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 643 -~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 -VSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -HHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 1111222111 111111 112233322 23599999998777677777666554321 223367777
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 75
No 213
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.016 Score=65.24 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCc-EEEEEecCC-cCHHHHHHHHHHHhcCCC
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDL-KAWTCVSND-FDVIRLTKTILRCITKQT 276 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~ 276 (1416)
..++++.+..-. ..+.+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+. ..+.++.+.+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 445777765432 2356689999999999999998874321 12233 467666664 467788888887776544
Q ss_pred CCCCCHH-----HHHHHHHHHh--ccccEEEEeccc
Q 000568 277 IDDSDLN-----LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 277 ~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.+..... .....+.+++ ++++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3222211 1122222333 488999999999
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.36 E-value=0.0094 Score=65.38 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.|+|++|+|||+||..+......+ .+ .+.+++ ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~-G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA-GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc-CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 467799999999999999997642211 11 233443 22333333222111 11 112232222 344
Q ss_pred EEEEeccccccChhhHh--hhcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWV--DMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
-++|+||+.......+. .+...+.. ...+ .+||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 59999999754333332 22222211 1234 488888764
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.012 Score=63.24 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|.+|+|||+||.++++.... .-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 357889999999999999999985322 2234555533 3444443333211 1112222 223344 3
Q ss_pred cEEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccc
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRN 335 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~ 335 (1416)
.=+||+||+......+|.. +...+.. -...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488889997665556654 2222211 1123457777764
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.36 E-value=0.012 Score=64.75 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV 255 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 255 (1416)
...+.++|..|+|||.||.++++... +..-..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 46789999999999999999998532 211234566654
No 217
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.34 E-value=0.11 Score=60.27 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV 243 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 243 (1416)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+....+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445567777776542 246789999999999999999999875433
No 218
>PRK06526 transposase; Provisional
Probab=96.34 E-value=0.0053 Score=66.81 Aligned_cols=101 Identities=19% Similarity=0.130 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|++|+|||+||..+...... ..+ .+.|+ +..++...+..... ... ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--cc
Confidence 356899999999999999999874321 122 23332 23334444432211 111 12223322 23
Q ss_pred cEEEEeccccccChhhHh--hhcccccc-CCCCcEEEEEccch
Q 000568 297 KFLLVLDDVWNENYNDWV--DMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
.-+||+||+.......|. .+...+.. ...+ .+|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 458999999654322222 12222211 1224 488888864
No 219
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.26 E-value=0.017 Score=74.79 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=76.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.+++..- +.-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccH--
Confidence 5689999999999888863221 0122245677899999999999999986321 11122334444432211111
Q ss_pred HHHHHhcCCC-C-CCCCHHHHHHHHHHHhcccc-EEEEeccccccChhhHhhhccccccC-----------CCCcEEEEE
Q 000568 267 TILRCITKQT-I-DDSDLNLLQEELNKQLSRKK-FLLVLDDVWNENYNDWVDMSRPLEAG-----------APGSKIIVT 332 (1416)
Q Consensus 267 ~il~~l~~~~-~-~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivT 332 (1416)
.+-++.+. . ....... +.+.++.++ -+++||+++..+.+.++.+...+..+ ...+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11122111 1 1111122 334444444 58999999887777777776665543 134556777
Q ss_pred ccc
Q 000568 333 TRN 335 (1416)
Q Consensus 333 tR~ 335 (1416)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 765
No 220
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.025 Score=65.52 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=83.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcEE
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLKA 251 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 251 (1416)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...... ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888876432 1233589999999999999999987532111 112344
Q ss_pred EEEecCCcC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 252 WTCVSNDFD---VIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 252 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
.+..+.... ..+..+++.+....... .++.-++++|+++..+.+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 23333333333222110 35677999999987766666667666666666778
Q ss_pred EEEEccch-HHHHhh-CCCCeeeCCC
Q 000568 329 IIVTTRNQ-EVVAIM-GTAPAYQLKR 352 (1416)
Q Consensus 329 iivTtR~~-~v~~~~-~~~~~~~l~~ 352 (1416)
+|++|... .+.... .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88877743 222211 1123466666
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.23 E-value=0.014 Score=62.38 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..-+++.|+|++|+|||++|.+++... ...-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 356899999999999999999988642 22346789998875 55544443
No 222
>PHA00729 NTP-binding motif containing protein
Probab=96.21 E-value=0.034 Score=58.24 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999874
No 223
>PRK04132 replication factor C small subunit; Provisional
Probab=96.20 E-value=0.076 Score=67.05 Aligned_cols=154 Identities=11% Similarity=0.051 Sum_probs=94.4
Q ss_pred CCCCcHHHHHHHHHccccccccc-CcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEec
Q 000568 225 MGGLGKTTLAQLVYNDHRVQDHF-DLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLD 303 (1416)
Q Consensus 225 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 303 (1416)
|.++||||+|..++++.- .+.+ ..++-++++....+. ..+++++.+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998531 1222 235566777654444 333443332211000 01245799999
Q ss_pred cccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHH
Q 000568 304 DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEI 381 (1416)
Q Consensus 304 dv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 381 (1416)
+++.-+......+...+......+++|.++.+. .+.... .....+++.+++.++....+...+...+.. .+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~---~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LT---EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CC---HHH
Confidence 998887777888877776544566766655543 333222 223579999999999888877665322211 11 345
Q ss_pred HHHHHHhcCCChHHHHH
Q 000568 382 GKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 382 ~~~i~~~~~glPLai~~ 398 (1416)
...|++.++|.+-.+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 67799999998854443
No 224
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.0064 Score=60.53 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=25.8
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeec
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIW 1187 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 1187 (1416)
+...++|++|.+.... .|..++.|.+|.+++|.+..+-|.--..+++|+.|.+.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4445555555543221 24445555555555555554444333334445555554
No 225
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.19 E-value=0.027 Score=61.59 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 264 (1416)
....++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 34689999999999999999999754222221 357899988877665444
No 226
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.017 Score=68.15 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=109.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
+++||.+.-...|...+.... -..-....|+-|+||||+|+.++...-.... ...+....=...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 357999999999999886542 2344567899999999999999875422211 0111111111112222
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHHh----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNKQL----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-..+ ......++++.+.+.+.. +++-=+.|+|.|.-.+...|+.++..+..--...+.|..|++ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 210000 001112233222222211 244448899999877778899998888665556666665555 3333
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
.. ......|.++.++.++-...+...+-.+....+ .+...-|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 22 233467999999999888888877744433222 2334447777777544
No 227
>PRK04296 thymidine kinase; Provisional
Probab=96.15 E-value=0.0098 Score=62.01 Aligned_cols=113 Identities=13% Similarity=-0.018 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTID--DSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 295 (1416)
.++.|+|..|.||||+|..++.. ...+-..+..+. ..++.+.....++.+++..... ....+++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888773 322323333332 1112122233344555422111 2334555555555 233
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
+.-+||+|.+.--+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999543222222333322 235788999998853
No 228
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.099 Score=61.00 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=101.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.++=|.++.+.++.+++...... +-...+-|.++|++|+|||.||++++.... +-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch-----
Confidence 45778898888888877542210 123466788999999999999999998432 223444332
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC------hhhHh-----hhcc---cccc-CCCCcE
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN------YNDWV-----DMSR---PLEA-GAPGSK 328 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~-----~~~~---~l~~-~~~gs~ 328 (1416)
+|+..+. ..+.+.+.+.+.+.-..-.+++++|+++-.. +.+.+ ++.. -+.. ...|-.
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 2222222 2234445555556666779999999996421 11111 1111 1111 112333
Q ss_pred EEE---EccchHHHHhhC----CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC----hHHHH
Q 000568 329 IIV---TTRNQEVVAIMG----TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL----PLAAK 397 (1416)
Q Consensus 329 iiv---TtR~~~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl----PLai~ 397 (1416)
||| |+|-..+-..+. ..+.+.+.--++..-.++++..+-+-.- ..+-++.+ |++..-|. -.|+.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d~~q----lA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFDFKQ----LAKLTPGFVGADLMALC 404 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcCHHH----HHhcCCCccchhHHHHH
Confidence 333 455433322222 2355777777777666677666533221 12233444 55555554 34555
Q ss_pred HHHHHh
Q 000568 398 TLGGLL 403 (1416)
Q Consensus 398 ~~~~~l 403 (1416)
..|+..
T Consensus 405 ~~Aa~v 410 (802)
T KOG0733|consen 405 REAAFV 410 (802)
T ss_pred HHHHHH
Confidence 445444
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.0072 Score=68.26 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.-+.++|..|+|||.||.++++....+ -..++++++.. ++..+...-... ..+.... + +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~---~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTADE------LIEILREIRFNN---DKELEEV---Y-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHHH------HHHHHHHHHhcc---chhHHHH---H-HHhcc-C
Confidence 568999999999999999999853222 22456665432 333332211100 1111111 2 22221 2
Q ss_pred EEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
=||||||+.......|.. +...+.. ...+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 489999996654344432 2222221 12345688888753
No 230
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.074 Score=55.06 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CeeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.++||.+..+.+ |++.|...+.=++..++-|..+|++|.|||.+|+++++...+ .| +.+-. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech-------HH
Confidence 568998876543 666775544324456889999999999999999999985322 22 22211 11
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh------------hhHhhhcccccc--CCCCcEEEEE
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY------------NDWVDMSRPLEA--GAPGSKIIVT 332 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~~~~~~~~l~~--~~~gs~iivT 332 (1416)
-|-+..+ +....+.+...+.-+.-.+++.+|.++-... +-.++++.-+.. .+.|...|..
T Consensus 187 liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1111111 0011111112222234578999998853210 111222222221 2346555666
Q ss_pred ccchHHHHhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 333 TRNQEVVAIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 333 tR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|...++.... .....++..--+++|-.+++...+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 6655543321 223457777778888888888877
No 231
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.07 E-value=0.00078 Score=62.15 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=55.1
Q ss_pred cccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCC
Q 000568 605 RVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLR 671 (1416)
Q Consensus 605 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 671 (1416)
+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|.-|..|.+|-+|+..+|. +..+|.+
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 4667889999999999988999999999999985 667788888889999999988887 7777765
No 232
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.07 E-value=0.065 Score=68.97 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=94.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+.-.-. -+-...+-+.++|++|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 4578888888877776532100 011234558899999999999999999843 2222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC--------h----hhHhhhcccccc--CCCCcE
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN--------Y----NDWVDMSRPLEA--GAPGSK 328 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~~~~~l~~--~~~gs~ 328 (1416)
+++.... ......+...+...-.....+|++|+++.-. . .....+...+.. ...+.-
T Consensus 522 ----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 1112222233333334567899999985320 0 011122222221 123445
Q ss_pred EEEEccchHHHHh-h----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 329 IIVTTRNQEVVAI-M----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 329 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
||.||...+.... + .....+.++..+.++-.++|..+.-+.. .....++. .+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHcCCCC
Confidence 6667765543321 1 2345688888888888889876653221 11222333 4777787754
No 233
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.06 E-value=0.036 Score=66.15 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred CeeeeehhHHHHHHHHHhc---CCC-CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLR---DDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~---~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
.++.|.+..++.+.+.... ... -+-...+-|.++|++|+|||.+|+.+++.. ...| +-++.+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------h-
Confidence 3567877666655542211 000 011335678899999999999999998842 2122 1122211 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-------h-hH----hhhccccccCCCCcEEEEEc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-------N-DW----VDMSRPLEAGAPGSKIIVTT 333 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~-~~----~~~~~~l~~~~~gs~iivTt 333 (1416)
..... ......+...+...-...+.+|++|+++..-. . .- ..+...+.....+.-||.||
T Consensus 296 ---~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---ccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 10000 01111222222222235689999999964210 0 00 11111122223344456677
Q ss_pred cchHH-HHhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHhcCCCh
Q 000568 334 RNQEV-VAIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF-SSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 334 R~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~glP 393 (1416)
.+.+. ...+ .....+.++..+.++-.++|..+....... ....++ ..+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 65432 1121 234568888889999899998776432211 112223 34677776654
No 234
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.05 E-value=0.019 Score=62.21 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
....++.|+|.+|+|||++|.+++... ...-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 346899999999999999999998743 2234568899877 5554443
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.021 Score=65.43 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...++.++|++|+||||+|.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 236
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.01 E-value=0.024 Score=57.37 Aligned_cols=131 Identities=20% Similarity=0.141 Sum_probs=65.3
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
+||....+.++.+.+..-.. .. .-|.|+|..|+||+.+|+.+++... .... .+-|+++.- +.+.+-.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p---fi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPRKNGP---FISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCC---eEEEehhhh-hcchhhhhhhc
Confidence 46888888888887765422 22 3455999999999999999998421 1222 234444432 23333333332
Q ss_pred HhcCCCCCC-CCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhcccccc------CC-----CCcEEEEEccch
Q 000568 271 CITKQTIDD-SDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEA------GA-----PGSKIIVTTRNQ 336 (1416)
Q Consensus 271 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~------~~-----~gs~iivTtR~~ 336 (1416)
.-.+..... ..... .+.. -..=-|+||+|++-.......+...+.. +. ...|||.||...
T Consensus 73 ~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 211111111 10111 1121 2334788999977654444444443321 11 257888888854
No 237
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.99 E-value=0.021 Score=63.74 Aligned_cols=85 Identities=20% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .++.++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 456899999999999999999987642 2334567899887766643 33444332 11334556666666
Q ss_pred HHHhcc-ccEEEEecccc
Q 000568 290 NKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~-kr~LlVlDdv~ 306 (1416)
...++. .--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555543 45689999983
No 238
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.97 E-value=0.00036 Score=71.82 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=57.5
Q ss_pred ccCccEEEeecCCCCccc----cccccCCCCcceEEEccCCCcc-----------ccCCCCCCCCccEEeEccCCCCCcC
Q 000568 965 SCKLEYLGLSYCQGLVTL----PQSLLNLSSLREIYIRSCSSLV-----------SFPEVALPSKLRLITIWDCEALKSL 1029 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~----~~~l~~l~~L~~L~L~~n~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~ 1029 (1416)
+..++.++||+|.+.... ...+.+-.+|+..+++.-.... -.+....+|.|+..++++|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 367889999999886543 3455666778888776531111 1123456789999999999876665
Q ss_pred chhh--hcCCCCCcCeeEEccCC
Q 000568 1030 PEAW--MCETNSSLEILNIAGCS 1050 (1416)
Q Consensus 1030 ~~~~--~~~~~~~L~~L~l~~c~ 1050 (1416)
|... +.++.+.|+.|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 5432 22667789999998853
No 239
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.97 E-value=0.013 Score=60.62 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEE
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWT 253 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 253 (1416)
...+|.+.|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999873 34445555555
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.96 E-value=0.0084 Score=58.97 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=61.5
Q ss_pred eeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc-ccccCcEEEEEecCCcCHHHHHHHHHHH
Q 000568 193 YGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHFDLKAWTCVSNDFDVIRLTKTILRC 271 (1416)
Q Consensus 193 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~ 271 (1416)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +.+.... .+++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------~~~l-- 65 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------AELL-- 65 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------HHHH--
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------HHHH--
Confidence 466667777776665421 12345789999999999999988874322 122211 0111100 1111
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccC-CCCcEEEEEccch
Q 000568 272 ITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 272 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~iivTtR~~ 336 (1416)
.+ .+.--++++|++.-+......+...+... ....|+|.||+..
T Consensus 66 ------------------~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 66 ------------------EQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ------------------HH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ------------------HH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11 14456889999776656666666666532 5678999999864
No 241
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.00068 Score=83.94 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=49.9
Q ss_pred CccEEEEecCCchhh--hHHhhccCCcccEEeeccC-CCccccc----ccccCCCCcceeeeccCCCcccccCCC--CCC
Q 000568 1132 SLKFLDVWECPKLES--IAERLNNNTSLEVIDIGNC-ENLKILP----SGLHNLCQLQRISIWCCGNLVSFSEGG--LPC 1202 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~ 1202 (1416)
.|+.|.+.+|..... +......+++|+.|++++| ......+ .....+.+|+.|+++++..++..--.. ..|
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 555555555544332 3344556666666666652 2111111 122334566666666555433211000 015
Q ss_pred CCcceEEEccccC-CCc-CcccccCcCccceeeeecC
Q 000568 1203 AKLTRLEISECER-LEA-LPRGLRNLTCLQHLTIGDV 1237 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~-~~~-~p~~l~~l~~L~~L~ls~n 1237 (1416)
++|++|.+.+|.. +.. +-.....++.|++|++++|
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 5666666666652 221 1122334566666666666
No 242
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.93 E-value=0.043 Score=59.57 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhcCC---------CCCCCC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCITKQ---------TIDDSD 281 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------~~~~~~ 281 (1416)
....++.|+|.+|+|||++|.+++......+ .=..++|++....++..++. ++.+..... .....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3467999999999999999999876421111 01457888887776655443 333332211 012234
Q ss_pred HHHHHHHHHHHhc---c-ccEEEEecccc
Q 000568 282 LNLLQEELNKQLS---R-KKFLLVLDDVW 306 (1416)
Q Consensus 282 ~~~~~~~l~~~l~---~-kr~LlVlDdv~ 306 (1416)
.+++...+.+... . +--+||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5555555555443 3 34488999884
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.91 E-value=0.023 Score=63.40 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++.. ..+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999887643 2233557788777665543 34444432 12334556666666
Q ss_pred HHHhc-cccEEEEecccc
Q 000568 290 NKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~-~kr~LlVlDdv~ 306 (1416)
...++ +.--+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 345689999984
No 244
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.90 E-value=0.031 Score=61.21 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...+.=|+|.+|+|||.||.+++-...... .=..++|++....++..++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 356889999999999999988875433222 22458999998889887775 4566543
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.026 Score=62.91 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
..++++|+|++|+||||++..++.....+ +.+ .+..++.... ......+....+.++.......+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999999988643322 112 3455554331 1222333333444443333334444555444443
Q ss_pred ccccEEEEeccc
Q 000568 294 SRKKFLLVLDDV 305 (1416)
Q Consensus 294 ~~kr~LlVlDdv 305 (1416)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.019 Score=68.21 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=55.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
+.-+++.++|++|+||||||..+++...+ .++=|++|+..+...+-..|...+........ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 45689999999999999999988874322 26678888888877777777666554332111 2
Q ss_pred cccEEEEeccccccC
Q 000568 295 RKKFLLVLDDVWNEN 309 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~ 309 (1416)
++..-+|+|.++-..
T Consensus 386 srP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP 400 (877)
T ss_pred CCcceEEEecccCCc
Confidence 567788999887654
No 247
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.90 E-value=0.004 Score=61.51 Aligned_cols=86 Identities=22% Similarity=0.118 Sum_probs=45.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEE
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 299 (1416)
|.++|++|+|||+||+.+++.. . ....-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 5689999999999999998743 1 123345677766666554322111 000 000000000001 17889
Q ss_pred EEeccccccChhhHhhhcc
Q 000568 300 LVLDDVWNENYNDWVDMSR 318 (1416)
Q Consensus 300 lVlDdv~~~~~~~~~~~~~ 318 (1416)
+|||++...+..-+..+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEESSCGG--HHHHHTTHH
T ss_pred EEECCcccCCHHHHHHHHH
Confidence 9999997654444444433
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.89 E-value=0.064 Score=58.00 Aligned_cols=171 Identities=21% Similarity=0.235 Sum_probs=91.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc-ccccccCcEEEEEecCCc-----CHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH-RVQDHFDLKAWTCVSNDF-----DVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~-----~~~~~ 264 (1416)
.++|-.++...+..++..... .+...-|.|+|+.|.|||+|...+..+. ++.++| .-|...... .+..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478999998888888864321 1234557789999999999998777651 233333 333333322 22333
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhc------cccEEEEeccccccChhhHhh----hcccc-ccCCCCcEEEEEc
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLS------RKKFLLVLDDVWNENYNDWVD----MSRPL-EAGAPGSKIIVTT 333 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~----~~~~l-~~~~~gs~iivTt 333 (1416)
.+++..++........+..+....+-..|+ +-++.+|+|.++---...-.. +.+.- ....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 444433333322222233333344444443 225788888775421000001 11111 1234566778899
Q ss_pred cchH-------HHHhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 334 RNQE-------VVAIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 334 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|-.- |-.++.-..++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 22222222345567777778888877665
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.89 E-value=0.0058 Score=58.67 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|.|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.043 Score=62.01 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
+.++|+++|++|+||||++..++.... ..=..+..+..... ....+.++...+.++.+.....+.+.+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999986432 22123444544322 123333444444444433333455666655554422
Q ss_pred c-ccEEEEeccccc
Q 000568 295 R-KKFLLVLDDVWN 307 (1416)
Q Consensus 295 ~-kr~LlVlDdv~~ 307 (1416)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234677887643
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.84 E-value=0.034 Score=60.23 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccccc-CcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH---
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-DLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN--- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~--- 283 (1416)
+-+.++|+|..|+||||||+++++. .+.+| +.++++-+++... +.++.+++.+.=... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999984 33344 3455566666543 444555544321110 11111111
Q ss_pred --HHHHHHHHHh--c-cccEEEEeccc
Q 000568 284 --LLQEELNKQL--S-RKKFLLVLDDV 305 (1416)
Q Consensus 284 --~~~~~l~~~l--~-~kr~LlVlDdv 305 (1416)
...-.+.+++ + ++++|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 3 88999999998
No 252
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.84 E-value=0.0019 Score=79.98 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=45.7
Q ss_pred ccCccEEEeecCCCCcc--ccccccCCCCcceEEEccC-CCccccC-----CCCCCCCccEEeEccCCCCCcCchhhhcC
Q 000568 965 SCKLEYLGLSYCQGLVT--LPQSLLNLSSLREIYIRSC-SSLVSFP-----EVALPSKLRLITIWDCEALKSLPEAWMCE 1036 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n-~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 1036 (1416)
++.|+.|.+..|..... +-.....++.|+.|++++| ......+ ....+++|+.|+++.+...+...-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46677777776655443 3334556677777777763 2211111 12234556666666666444333333333
Q ss_pred CCCCcCeeEEccCCC
Q 000568 1037 TNSSLEILNIAGCSS 1051 (1416)
Q Consensus 1037 ~~~~L~~L~l~~c~~ 1051 (1416)
.+++|+.|.+.+|..
T Consensus 267 ~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN 281 (482)
T ss_pred hCCCcceEccCCCCc
Confidence 456666666555554
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.06 Score=61.05 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHh
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +.... ..-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688876655555556655544434566777776643 33322 12356889999999998888664
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.059 Score=57.73 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccc--cccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHR--VQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
-|+|.++|++|.|||+|++++++... ..+.|....-+.+... .++.+-..+ ...-+..+-+.|++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 47899999999999999999998753 3445544444433221 122221111 11233445556666666
Q ss_pred ccc--EEEEeccccc
Q 000568 295 RKK--FLLVLDDVWN 307 (1416)
Q Consensus 295 ~kr--~LlVlDdv~~ 307 (1416)
++. +.+.+|.|..
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 654 4556888843
No 255
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.81 E-value=0.044 Score=66.97 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=35.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999988776432 2345679999999999999999763
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.79 E-value=0.042 Score=69.36 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=68.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.|.+.+..... ........+.++|++|+|||++|+.++... .. ..+.+++++-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----
Confidence 4589999999999998864211 012234578899999999999999998743 21 23344444322111
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHHHHHhcc-ccEEEEeccccccChhhHhhhccccc
Q 000568 267 TILRCITKQTI-DDSDLNLLQEELNKQLSR-KKFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 267 ~il~~l~~~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
.+.+-++.+.. ...+.. ..+.+.++. ..-+|+||+++..+.+.++.+...+.
T Consensus 529 ~~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11111222111 011111 122233333 34699999998877666776665554
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.77 E-value=0.096 Score=51.99 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCCCcEEEEEccchHHHHhhC
Q 000568 281 DLNLLQEELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG 343 (1416)
Q Consensus 281 ~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~ 343 (1416)
..++..-.|.+.+-+++-+++-|.- +.+ ..|+-+.-.-.-+..|..||++|-+.++...+.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3445555677788888889998853 322 345443322223557999999999998877763
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.077 Score=62.85 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=86.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|.++-+.++.+...-.-.. +-...+-|..+|+||+|||++|+++++. ..-.| +.+... +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----H
Confidence 3445666666665444321110 1245678889999999999999999983 33333 333221 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-----------hhHhhhccccccCCCCcEE--E
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-----------NDWVDMSRPLEAGAPGSKI--I 330 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~~~gs~i--i 330 (1416)
+ +...- ......+.+.+++.=+--..+|.||.++.... .-...++.-+........| |
T Consensus 504 L----~sk~v-----GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 L----FSKYV-----GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred H----HHHhc-----CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 1 11111 11122222223333233458888888854210 0112222222222222233 3
Q ss_pred E-EccchHHHHh-hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 331 V-TTRNQEVVAI-MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 331 v-TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
- |-|...+-.. +. ....+.++.-+.+.-.++|+.++-...- .+.-++.+ |+++..|.-
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vdl~~----La~~T~g~S 637 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVDLEE----LAQATEGYS 637 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-CccccHHH----HHHHhccCC
Confidence 3 3333333222 22 3356777777777778999988743222 22223444 555555543
No 259
>PRK09354 recA recombinase A; Provisional
Probab=95.75 E-value=0.031 Score=62.94 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++.. .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999987643 2334568899888777653 34444432 11234456666666
Q ss_pred HHHhc-cccEEEEecccc
Q 000568 290 NKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~-~kr~LlVlDdv~ 306 (1416)
...++ ++--+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 65554 345689999984
No 260
>PRK06696 uridine kinase; Validated
Probab=95.72 E-value=0.013 Score=63.06 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=35.2
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.+-+++|.+.+... ..+...+|+|.|.+|+||||+|+++...
T Consensus 3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 667788888888653 2345789999999999999999999874
No 261
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.72 E-value=0.081 Score=68.11 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..++++.+++...-.. +-...+-+.++|++|+|||++|+.+++.. ...| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH-----
Confidence 35789999999988876421100 11234668899999999999999998742 2222 2222111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-----------hhHhhhccccccC-CCCcEEE
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-----------NDWVDMSRPLEAG-APGSKII 330 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~-~~gs~ii 330 (1416)
+ .... .......+...+.........+|++|+++.... .....+...+... ..+..++
T Consensus 248 -i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 0000 011112233333344445668999999854210 0111222222211 1233344
Q ss_pred E-EccchH-HHHhhC----CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 331 V-TTRNQE-VVAIMG----TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 331 v-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
| ||.... +...+. ....+.+...+.++-.+++....-+.. ...+. ....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCCH
Confidence 4 444332 222211 234577888888888888876542211 11111 23457888887653
No 262
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.70 E-value=0.0092 Score=59.44 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCcccceeccccccCcccc--cCccccCCcCcEEecCCCCCCCCCCC-----CCccccceeeecCChhhHHh-----h-c
Q 000568 1316 PATLTYLVIADLPNLERLS--SSIFYHQNLTKLKLCNCPKLKYFPEK-----GLPASLLRLEISGCPLIEER-----Y-I 1382 (1416)
Q Consensus 1316 ~~sL~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~~sL~~L~l~~cp~l~~~-----~-~ 1382 (1416)
+++|..|.+.+ ++|..+. ..+..+|.|+.|.+-+|+ ++.-... -..++|+.||+.+-..-++. . .
T Consensus 87 ~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~~ 164 (233)
T KOG1644|consen 87 LPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFKG 164 (233)
T ss_pred ccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhcc
Confidence 34444444444 3444331 135566889999998887 4444332 12478999999876432222 1 2
Q ss_pred cCCCccccccCc
Q 000568 1383 KDGGQYRHLLTY 1394 (1416)
Q Consensus 1383 ~~~~~~~~~i~~ 1394 (1416)
+.+...|.+++.
T Consensus 165 k~~k~~~~~i~~ 176 (233)
T KOG1644|consen 165 KKGKKAAKSINR 176 (233)
T ss_pred ccchhhhhhhhh
Confidence 334445665554
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.66 E-value=0.04 Score=56.29 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
++.|+|.+|+||||+|+.+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998743 22334577777765543
No 264
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.65 E-value=0.033 Score=59.96 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
...+++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 346899999999999999999998642 22234577887655443
No 265
>PTZ00494 tuzin-like protein; Provisional
Probab=95.62 E-value=0.81 Score=51.88 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.....+|.|++|-..+...|..-+ ...++++.+.|.-|.||++|.+.....+.. ..++|++.... +-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHH
Confidence 345678999998888888886653 357899999999999999999988875433 36778887654 4567
Q ss_pred HHHHHhcCCCCCC-CC-HHHHHHHHHHH---hccccEEEEec--cccccChhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDD-SD-LNLLQEELNKQ---LSRKKFLLVLD--DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~-~~-~~~~~~~l~~~---l~~kr~LlVlD--dv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
.+.+.++.+..+. .| .+-+.+..+.. ..++.=+||+- +-.+- ..-+.+.. .|.....-|+|++---.+.+-
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeechHhhhc
Confidence 7888888765543 12 23333333322 33454455543 22111 01122211 223334567787755444322
Q ss_pred Hhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 340 AIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 340 ~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
... ..-.-|.++.++.++|.++..+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 112358899999999998876653
No 266
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.60 E-value=0.039 Score=62.24 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCcHHH-HHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTT-LAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
+-+||+++|+.|+|||| ||+..+.-... ..=..+..++... .....+.++..++-++.+.....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999995 55544432211 2223456665543 33455666666666666655555666666555543
Q ss_pred ccccEEEEeccc
Q 000568 294 SRKKFLLVLDDV 305 (1416)
Q Consensus 294 ~~kr~LlVlDdv 305 (1416)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34455655
No 267
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.59 E-value=0.0093 Score=70.16 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=40.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994332212345689999999999999999999874
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.58 E-value=0.048 Score=61.36 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
..-+++-|+|.+|+|||+++.+++...... +.=..++|++....++.+++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 346899999999999999998877432221 1124689999988888877654 5565543
No 269
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.56 E-value=0.043 Score=54.29 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC---cCHHHHHHHHHHHhc-----CC-CCCCCCHH-----
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTILRCIT-----KQ-TIDDSDLN----- 283 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~-----~~-~~~~~~~~----- 283 (1416)
..|-|++..|.||||+|...+- +..++=..+.++.+-+. ......++.+ ..+. .. .....+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999977665 33333334455443332 2333333333 1110 00 00001111
Q ss_pred --HHHHHHHHHhcccc-EEEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 284 --LLQEELNKQLSRKK-FLLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 284 --~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
...+..++.+.... =|+|||++-.. ...+.+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444444444 49999998432 1223445555555555677999999985
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.041 Score=62.83 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
..++.++|+.|+||||++.++......+.....+..+.... .....+.++...+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46999999999999999999987432221123445554332 2334555566666666543333333344444433 344
Q ss_pred ccEEEEeccccc
Q 000568 296 KKFLLVLDDVWN 307 (1416)
Q Consensus 296 kr~LlVlDdv~~ 307 (1416)
+ =+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566898843
No 271
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.51 E-value=0.014 Score=61.06 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL---- 293 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---- 293 (1416)
+++.|.|.+|.||||+++.+.......+ ..+.+.......... +.+..+.. ..++..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 6888999999999999998876433322 233333332222222 22222211 111111000000000
Q ss_pred --ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH
Q 000568 294 --SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 294 --~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
..++-+||+|++...+...+..+...... .|+|+|+.=-..+
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999988766677776665544 4778877655443
No 272
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.058 Score=63.60 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+++|+|++|+||||++.++......+.....+..++... .......++...+.++.......+...+...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988876322221123344454322 11222333333333333222233444555444433 3
Q ss_pred cccEEEEecccc
Q 000568 295 RKKFLLVLDDVW 306 (1416)
Q Consensus 295 ~kr~LlVlDdv~ 306 (1416)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 273
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.054 Score=67.78 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=75.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCC--CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDG--GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
..++|.++.+..|.+.+.....+... ....+.+.|+.|+|||-||++++.- +-+..+..+-++.++- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-
Confidence 45788888888888888765432222 4677889999999999999999872 3233344444544432 11
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhcccccc
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEA 322 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~ 322 (1416)
+.+.++.+.. .-..+....+.+.++.+.| +|.||||+..+.+....+...+..
T Consensus 633 vskligsp~g--yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPPG--YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCcc--cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 3333333221 1112223356677777765 677999988877666655555443
No 274
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.50 E-value=0.0081 Score=74.82 Aligned_cols=110 Identities=19% Similarity=0.062 Sum_probs=74.3
Q ss_pred CCccEEEEecCCchh-hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcc-cccCCCCCCCCcceE
Q 000568 1131 QSLKFLDVWECPKLE-SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLV-SFSEGGLPCAKLTRL 1208 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~L~~L 1208 (1416)
|+|+.|.+++-.+.. .......++++|..||+|++++... .+++.+++|++|.+.+-.... ..-...+.+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 499999998876643 4556677899999999999887654 678889999999886422221 011134557889999
Q ss_pred EEccccCCCcC------cccccCcCccceeeeecCCCCCC
Q 000568 1209 EISECERLEAL------PRGLRNLTCLQHLTIGDVLSPER 1242 (1416)
Q Consensus 1209 ~l~~n~~~~~~------p~~l~~l~~L~~L~ls~n~~~~~ 1242 (1416)
|+|........ -+.-..+|.|+.||.|++.+...
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99887654322 11123478888888887655443
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.089 Score=62.08 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+++.++|++|+||||++..++........-..+..|+..... ...+.++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999998887633211222345556553321 122233333444443333334445555555543 2
Q ss_pred ccEEEEeccc
Q 000568 296 KKFLLVLDDV 305 (1416)
Q Consensus 296 kr~LlVlDdv 305 (1416)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888966
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.46 E-value=0.28 Score=54.67 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=30.4
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++=..+....+..++... +.|.|.|++|+||||+|+.++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH
Confidence 3444444556666666432 46889999999999999999874
No 277
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.24 Score=60.90 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=101.0
Q ss_pred CCeeeeehhHHHH---HHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 189 EAKVYGRETEKKE---IVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 189 ~~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
-.++.|-++.+++ +++.|..++. -+..-++=+-++|++|.|||-||++++-... +-|++++...
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE--- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE--- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH---
Confidence 3467888765555 5555543321 0233467788999999999999999997432 3345554421
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC---------------hhhHhhhccccccCCCCc
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN---------------YNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~~gs 327 (1416)
.++.+.+.. . ..+.+.+...=...+..|.+|+++... ...++++..-......+.
T Consensus 380 -----FvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 -----FVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -----HHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 111111110 0 011111112223456788888875321 011233333332222333
Q ss_pred --EEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 328 --KIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 328 --~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
-++-+|...++... +. ..+.+.++.-+...-.++|..++-..... .+..++++ |+...-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHHH
Confidence 33446666555432 12 34678888888899999999988443321 33445566 8888888875543
No 278
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.41 E-value=0.13 Score=54.02 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=112.4
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---c-ccccCcEEEEEecCC---------
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---V-QDHFDLKAWTCVSND--------- 258 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~-~~~f~~~~wv~~~~~--------- 258 (1416)
+.++++....+..... .+..+-..++|+.|.||-|.+..+.+..- + +-.-+...|.+.+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 23467889999999999998877765310 0 111233445443332
Q ss_pred -c-----------CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhccccccCCC
Q 000568 259 -F-----------DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 259 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~~ 325 (1416)
+ .-+.+.++++++...... .+ .-..+.| ++|+-.+++-..+...+++.....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 112334444443322110 00 0012334 666777766555555556655554456
Q ss_pred CcEEEEEccch--HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 000568 326 GSKIIVTTRNQ--EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGL 402 (1416)
Q Consensus 326 gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~ 402 (1416)
.+|+|+..-+. -+...-..--.+++...+++|....++..+-.++- ..+ .+++.+|+++++|.- -|+-++-..
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67877643321 11111111235889999999999988887744332 122 578899999999865 344333322
Q ss_pred hccC-C--------CcchHHHHHhhcc
Q 000568 403 LRGK-H--------GPSDWEDVLNSNI 420 (1416)
Q Consensus 403 l~~~-~--------~~~~w~~~l~~~~ 420 (1416)
-..+ + ..-+|+-.+.+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHH
Confidence 1111 1 1457888776543
No 279
>PHA02244 ATPase-like protein
Probab=95.36 E-value=0.06 Score=60.54 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-|.|+|++|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999874
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.30 E-value=0.077 Score=60.17 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
...++.-|+|.+|+|||+|+.+++-..... +.-..++|++....|+..++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 356888999999999999999886432221 1224689999999888887654 5555543
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.19 Score=58.70 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=86.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-|.+||++|+|||-||++|++.. .-.| +++-.. +++..... .+...+...+++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----ELlNkYVG---------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----ELLNKYVG---------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcCC
Confidence 4567899999999999999999943 3333 555432 22222211 12222333344443466
Q ss_pred cEEEEecccccc-----Chh------hHhhhcccccc--CCCCcEEEEEccchHHHHh--hCC---CCeeeCCCCChhhH
Q 000568 297 KFLLVLDDVWNE-----NYN------DWVDMSRPLEA--GAPGSKIIVTTRNQEVVAI--MGT---APAYQLKRLSTDDC 358 (1416)
Q Consensus 297 r~LlVlDdv~~~-----~~~------~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~ 358 (1416)
.++|.||.++.- +.. -...++.-+.. ...|.-||-.|-.+++... +.. ....-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999999541 001 12223332322 2357778877776655422 222 34677788888888
Q ss_pred HHHHHHhhcCCCCC-CCChhHHHHHHHHHHhcCCCh
Q 000568 359 LSVFTQHSLDSRDF-SSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 359 ~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~glP 393 (1416)
.++++...-....+ ..+-.+.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888877432221 223345564432 3455543
No 282
>PRK06762 hypothetical protein; Provisional
Probab=95.26 E-value=0.18 Score=51.59 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+|.|.|++|+||||+|+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 283
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.25 E-value=0.015 Score=59.00 Aligned_cols=41 Identities=24% Similarity=0.092 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
..++.+.|+.|+|||.+|+.+...... +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 468889999999999999999874321 33344555555543
No 284
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.24 E-value=0.061 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
||.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 285
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.23 E-value=0.17 Score=52.50 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE---ecCCcCHHHHH------HHHHHHhcCCC-----CCC-CC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC---VSNDFDVIRLT------KTILRCITKQT-----IDD-SD 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~------~~il~~l~~~~-----~~~-~~ 281 (1416)
-.+++|+|..|.|||||++.++... ......+++. +.. .+..... -++++.++... ... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998642 2233344432 211 1111111 11344443321 111 12
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccC-CC-CcEEEEEccchHHHHh
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-AP-GSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~iivTtR~~~v~~~ 341 (1416)
.+...-.+.+.+-..+-++++|+--.. +....+.+...+... .. |..||++|.+.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 233334456666777889999987432 222233333333321 12 6678888887665433
No 286
>PRK08233 hypothetical protein; Provisional
Probab=95.23 E-value=0.055 Score=56.40 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 287
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.0078 Score=37.13 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=11.4
Q ss_pred cceeeccCCCccccCccccc
Q 000568 607 FTVLNLSRTNIRNLPESITK 626 (1416)
Q Consensus 607 L~~L~Ls~~~i~~lp~~i~~ 626 (1416)
|++|||++|+|+.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45566666666666555443
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.22 E-value=0.12 Score=60.62 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTID---DSDLNLLQEELN 290 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 290 (1416)
....+|.++|.+|+||||+|..++...... .+ .+..|++.. .....+.++.+..+++.+... ..+...+.....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999999998744322 22 334444322 123345566666666544222 123333333333
Q ss_pred HHhccccEEEEecccc
Q 000568 291 KQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~ 306 (1416)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333343 568888873
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.052 Score=59.22 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|.+|+|||.||.++.+..- + .--.+.++++ .++..++...... . .....+.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K-AGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H-cCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-c
Confidence 45688999999999999999998543 2 2223455543 3445555444432 1 11122222221 1
Q ss_pred cEEEEeccccccChhhHh
Q 000568 297 KFLLVLDDVWNENYNDWV 314 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~ 314 (1416)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 238999999665444444
No 290
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.21 E-value=0.24 Score=60.66 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
...++|+...+.++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHh
Confidence 35689999999998888865422 2346779999999999999999874221 112345566655332 1111122
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccchH
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQE 337 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~~ 337 (1416)
.....+..... ..+ ....+. ....=.|+||+|..-.......+...+..+. ...|||.||...-
T Consensus 259 fG~~~g~~~ga-~~~-~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l 333 (509)
T PRK05022 259 FGHVKGAFTGA-ISN-RSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333 (509)
T ss_pred cCccccccCCC-ccc-CCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH
Confidence 21111100000 000 000111 1122347899998776666666665543321 2458888886531
Q ss_pred ---HHHh-hC-------CCCeeeCCCCChh
Q 000568 338 ---VVAI-MG-------TAPAYQLKRLSTD 356 (1416)
Q Consensus 338 ---v~~~-~~-------~~~~~~l~~L~~~ 356 (1416)
+... +. ....+.+++|.+.
T Consensus 334 ~~~~~~~~f~~dL~~rl~~~~i~lPpLreR 363 (509)
T PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRER 363 (509)
T ss_pred HHHHHcCCccHHHHhcccccEeeCCCchhc
Confidence 1110 10 1245788888763
No 291
>PRK10867 signal recognition particle protein; Provisional
Probab=95.14 E-value=0.065 Score=62.74 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTI---DDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 291 (1416)
...+|.++|.+|+||||+|..++.....+. -..+..|++... ....+.++...+..+.+.. ...+...+.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 368999999999999998888876332220 122344443321 1223344445555543321 12344444443333
Q ss_pred HhccccE-EEEecccc
Q 000568 292 QLSRKKF-LLVLDDVW 306 (1416)
Q Consensus 292 ~l~~kr~-LlVlDdv~ 306 (1416)
..+.+.| +||+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3344444 66666653
No 292
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.11 E-value=0.16 Score=50.18 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
-.+++|+|..|.|||||++.+..-.. .....+|+.... .+.-- .+-...+...-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999986432 123333332100 00000 00111122223355566667
Q ss_pred cEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHHh
Q 000568 297 KFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 297 r~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 341 (1416)
.-++++|+.... +......+...+... +..||++|.+.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 778899987432 222333333333332 2467788777655543
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.09 E-value=0.071 Score=62.45 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTI---DDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 291 (1416)
...++.++|.+|+||||+|..++.....+..+ .+..|++.. .....+.++.....++.+.. ...+..++.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999998887642211222 233444332 12233444455555544322 12334444433333
Q ss_pred HhccccE-EEEecccc
Q 000568 292 QLSRKKF-LLVLDDVW 306 (1416)
Q Consensus 292 ~l~~kr~-LlVlDdv~ 306 (1416)
....+.| +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444555 77777764
No 294
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.08 E-value=0.069 Score=58.49 Aligned_cols=134 Identities=20% Similarity=0.300 Sum_probs=72.0
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc-ccccccCcEEE----EEecCCcC------
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH-RVQDHFDLKAW----TCVSNDFD------ 260 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~~~~~~------ 260 (1416)
+-+|..+..--.++|+++ .+..|.+.|.+|.|||.||.+..-.. ..+..|..++- +.++++..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345677777777788665 47899999999999999986554321 22334433222 23333221
Q ss_pred ---HHHHHHHH---HHHhcCCCCCCCCHHHHHHHH-H---------HHhccc---cEEEEeccccccChhhHhhhccccc
Q 000568 261 ---VIRLTKTI---LRCITKQTIDDSDLNLLQEEL-N---------KQLSRK---KFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 261 ---~~~~~~~i---l~~l~~~~~~~~~~~~~~~~l-~---------~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
+.--.+.| ++.+..... .. +...+.+ . .+++++ +-+||+|...+-...+...+ +-
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~--~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---lt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE--PG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc--cc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HH
Confidence 11111222 222222111 11 2222222 1 123344 46899999977655444444 44
Q ss_pred cCCCCcEEEEEccchH
Q 000568 322 AGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 322 ~~~~gs~iivTtR~~~ 337 (1416)
..+.||||+.|---.+
T Consensus 374 R~G~GsKIVl~gd~aQ 389 (436)
T COG1875 374 RAGEGSKIVLTGDPAQ 389 (436)
T ss_pred hccCCCEEEEcCCHHH
Confidence 5578999998876443
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.052 Score=64.29 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 45688999999999999999998544 4444456666665532 223332222 223445566
Q ss_pred cccEEEEecccc
Q 000568 295 RKKFLLVLDDVW 306 (1416)
Q Consensus 295 ~kr~LlVlDdv~ 306 (1416)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 778999999995
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.02 Score=54.96 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV 243 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 243 (1416)
.--|+|.|++|+||||+++.+.+..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 356899999999999999999975433
No 297
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.04 E-value=0.18 Score=52.86 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc--CCCCcEEEEEccchHHHHhh
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIM 342 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~ 342 (1416)
.++..-.+.+.|-..+-+|+.|+=-.. +...-+.+...+.. ...|..||+.|-+..+|..+
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 344445677888888889999974211 11222233333332 23478899999999998864
No 298
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.03 E-value=0.094 Score=59.92 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...++-|+|++|+|||++|.+++........ =..++|++....++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4689999999999999999999864322211 14789999988888776653 444443
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.11 Score=59.86 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc--ccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ 292 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 292 (1416)
..++|.++|+.|+||||.+..++....... +-..+..++.... ......++...+.++.+.......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999998886433221 1123444544432 2233345555555555433334555555555543
Q ss_pred hccccEEEEeccccc
Q 000568 293 LSRKKFLLVLDDVWN 307 (1416)
Q Consensus 293 l~~kr~LlVlDdv~~ 307 (1416)
.+.-+|++|.+-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998844
No 300
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.086 Score=57.47 Aligned_cols=89 Identities=22% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHH-hcCC-CCCCCCHHH---HHHH
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRC-ITKQ-TIDDSDLNL---LQEE 288 (1416)
Q Consensus 214 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~~-~~~~~~~~~---~~~~ 288 (1416)
-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..++...+.. +... +..- .....+.++ +++.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 346789999999999999999998764 333344789999999898876643 3333 2211 112333333 3333
Q ss_pred HHHHhccccEEEEeccc
Q 000568 289 LNKQLSRKKFLLVLDDV 305 (1416)
Q Consensus 289 l~~~l~~kr~LlVlDdv 305 (1416)
+.+....+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 33433334568999988
No 301
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.043 Score=62.63 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=37.9
Q ss_pred Ceeeeeh---hHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 190 AKVYGRE---TEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 190 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.++-|-| .|+++|+++|.++.. -++.-++-|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3566765 467888888865432 123346778899999999999999998743
No 302
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.01 E-value=0.067 Score=60.73 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++-|+|.+|+|||++|..++....... .-..++|++....++.+++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3467899999999999999988875322211 11368999999988887764 5566554
No 303
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.00 E-value=0.041 Score=55.73 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc--cc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR--KK 297 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 297 (1416)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ ..+.|.+..... .......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 578999999999999998763 22356677666666543 333333321111 1112211222233333321 23
Q ss_pred EEEEeccc
Q 000568 298 FLLVLDDV 305 (1416)
Q Consensus 298 ~LlVlDdv 305 (1416)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999997
No 304
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.97 E-value=0.14 Score=52.94 Aligned_cols=118 Identities=19% Similarity=0.080 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--CC------------CCC-CC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--QT------------IDD-SD 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~------------~~~-~~ 281 (1416)
-.+++|.|..|.|||||++.+..-... -...+++.-. +.......+-+.++- +. ... ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 358999999999999999999864221 1223332211 111110111111110 00 011 11
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223455666677788999987543 11222233333322223667888888876554
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.96 E-value=0.097 Score=57.02 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC------------------
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT------------------ 276 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 276 (1416)
...+++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ...+.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999999986532 11 2346788888654 34444432 2232110
Q ss_pred --CCCCCHHHHHHHHHHHhcc-ccEEEEecccc
Q 000568 277 --IDDSDLNLLQEELNKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 277 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 306 (1416)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335666666666654 45589999984
No 306
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.4 Score=50.91 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=89.1
Q ss_pred eeeeehhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDD------LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
++-|.+..++.|.+...-.- .......+-|.++|++|.||+.||++|+... ...| .++|.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehH----HH
Confidence 56788888888877543210 0022346789999999999999999999742 2333 344432 11
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc-------ChhhHhhhcccc-------ccCCCCcEE
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE-------NYNDWVDMSRPL-------EAGAPGSKI 329 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-------~~~~~~~~~~~l-------~~~~~gs~i 329 (1416)
+....+ +.+.+...+-+.- ++|.-+|.+|.|+.. +.+.-..+...| .....|.-|
T Consensus 203 ----vSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 ----VSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ----HHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 111111 1122333332222 468889999999642 111111121111 122345555
Q ss_pred EEEccchHHHHhh---CCCCeeeCCCCChhhH-HHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 330 IVTTRNQEVVAIM---GTAPAYQLKRLSTDDC-LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 330 ivTtR~~~v~~~~---~~~~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
+-.|..+-+.... .....+-+ +|++..| ..+|+-+.+.....--.+++ ++++++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCCC
Confidence 5567665444332 12233434 4555555 45676666433222222333 4466666664
No 307
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.95 E-value=0.082 Score=59.74 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc---c-ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---D-HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++.|+|.+|+|||+||..++...... + .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 346899999999999999999887532221 1 1235789998887777663 34455443
No 308
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.028 Score=58.42 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred hhccCCcccEEeeccCCCcccccc----cccCCCCcceeeeccCCCcccccCCC--------------CCCCCcceEEEc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPS----GLHNLCQLQRISIWCCGNLVSFSEGG--------------LPCAKLTRLEIS 1211 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~----~l~~l~~L~~L~L~~~~~l~~~~~~~--------------~~~~~L~~L~l~ 1211 (1416)
.+-.|+.|+..+||.|.+....|+ .+++-+.|.+|.+++|. +.-+..+- ..-|.|+++.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 355677888888888776555443 34556777778776443 32221110 113677777777
Q ss_pred cccCCCcC----cccccCcCccceeeeecCCCCCC--CCCCCCC--CCCCcceeEecCCCC
Q 000568 1212 ECERLEAL----PRGLRNLTCLQHLTIGDVLSPER--DPEDEDR--LPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1212 ~n~~~~~~----p~~l~~l~~L~~L~ls~n~~~~~--~~~~~~~--l~~~L~~L~l~~~~~ 1264 (1416)
.|++.... ...+.+-..|+.+.+..|-|..- ....+.+ ...+|+.|+++.|..
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 77654221 11233335677777777743221 1001111 125677777777653
No 309
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=1.1 Score=50.20 Aligned_cols=157 Identities=8% Similarity=0.080 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc------c--cccCcEEEEEe-cCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV------Q--DHFDLKAWTCV-SNDFDVIRLTKTILRCITKQTIDDSDLNLLQE 287 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~------~--~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 287 (1416)
..+..++|..|.||+++|+.+.+..-. . .|=+...++.. +....+.++ +++.+.+.-...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCCc----------
Confidence 467779999999999999998774311 1 11112333321 111222221 122222211100
Q ss_pred HHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEcc-chHHHHh-hCCCCeeeCCCCChhhHHHHHHHh
Q 000568 288 ELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR-NQEVVAI-MGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-.+++=++|+|+++.......+.+...+..-..++.+|++|. ...+... ......+++.++++++..+.+...
T Consensus 87 -----~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 87 -----VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred -----ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 014677889999977665667777777766556777776554 4444433 233467999999999998877654
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
. . + .+.++.++...+|.=-|+..+
T Consensus 162 ~---~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 162 N---K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred C---C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 1 1 133555666777633455543
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.15 Score=52.38 Aligned_cols=118 Identities=21% Similarity=0.187 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcC--CC---CC-------CCCH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITK--QT---ID-------DSDL 282 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~---~~-------~~~~ 282 (1416)
-.+++|+|+.|.|||||.+.++.-.. ...+.+++.-.. ....... .+.++- +. .. -...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 46899999999999999999986422 223333332111 0011111 011110 00 00 0111
Q ss_pred HHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHHh
Q 000568 283 NLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 283 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 341 (1416)
+...-.+.+.+..+.-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 12223355666677789999987432 112222333333222235678888888766543
No 311
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.90 E-value=0.069 Score=59.52 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..++.++|||++|.|||.+|++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999853
No 312
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.82 E-value=0.14 Score=52.24 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc---ccccc---cC--cEEEEEecCCcCHHHHHHHHHHHhcCCCC------CCCC-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH---RVQDH---FD--LKAWTCVSNDFDVIRLTKTILRCITKQTI------DDSD- 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~~~- 281 (1416)
-.+++|+|+.|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886421 11111 10 12232 11 345555553211 1111
Q ss_pred HHHHHHHHHHHhccc--cEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHH
Q 000568 282 LNLLQEELNKQLSRK--KFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 340 (1416)
.....-.+.+.+-.+ .=++++|..-.. +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122223345555556 678888887432 22222333333322 124677888888876653
No 313
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.067 Score=51.53 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ 275 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 275 (1416)
+|.|-|++|+||||+|+.+++..... .| +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999854322 11 2335778888877654
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.75 E-value=0.18 Score=51.61 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE------ecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC------VSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELN 290 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 290 (1416)
-.+++|+|+.|+|||||++.+..-.. .....+++. +.+... -...+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 36999999999999999999886322 122222221 111111 111222333455
Q ss_pred HHhccccEEEEecccccc-ChhhHhhhccccccC--CCCcEEEEEccchHHHHh
Q 000568 291 KQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG--APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~ 341 (1416)
+.+..+.-++++|.--.. +......+...+... ..+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 666667788999987432 112222233333221 123567777777655443
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.73 E-value=0.048 Score=57.39 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.+|.|+|+.|+||||+++.+... ........++.-. ++.. ..... ...+..+.....+.....+.++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~E--~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPIE--FVHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCcc--ccccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999987763 2222233333221 1111 00000 00000000001122334556777777667
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
=.|++|.+.+. +........ ...|-.|+.|+-...+.
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 79999999654 333332222 22455677676655443
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.72 E-value=0.1 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 317
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.72 E-value=0.11 Score=54.47 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccC---cEEEEEecCCcCHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFD---LKAWTCVSNDFDVIRLTKTILRCI----TKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~~ 291 (1416)
||+|.|.+|+||||+|+++....... ... ....+....-......... -... .-......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999998743211 122 1333333222222222111 1111 1112344567777777777
Q ss_pred HhccccEEE
Q 000568 292 QLSRKKFLL 300 (1416)
Q Consensus 292 ~l~~kr~Ll 300 (1416)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 318
>PTZ00035 Rad51 protein; Provisional
Probab=94.71 E-value=0.17 Score=57.78 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++-|+|.+|+|||||+..++...... +.-..++|++....++..++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456899999999999999999887543321 11235679988777776663 44455544
No 319
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.068 Score=55.26 Aligned_cols=79 Identities=23% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
.++.+|+|.|.+|+||||+|+.++.. ..... +.-++...-+. ......+--....-......+.+-+.+.|...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 35689999999999999999999983 33221 11122111111 000000000011111234456677777777777
Q ss_pred cccc
Q 000568 294 SRKK 297 (1416)
Q Consensus 294 ~~kr 297 (1416)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.69 E-value=0.13 Score=52.30 Aligned_cols=118 Identities=17% Similarity=0.083 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
-.+++|+|..|.|||||.+.++... ......+++.... ..+..+..+ +.++.. .+-...+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 3589999999999999999998632 2233444442211 111111111 111110 111222333344556666
Q ss_pred cccEEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 295 RKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
.+.-++++|+.... +......+...+... ..|..||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 77788889987432 222233333333221 236678888888664433
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.14 Score=57.72 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..+++.++|+.|+||||++..++.....++ ..+.+++.... ....+.++...+.++.......+.+++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999999886432221 34556665432 233455666666665443334556666555544321
Q ss_pred -cccEEEEeccccc
Q 000568 295 -RKKFLLVLDDVWN 307 (1416)
Q Consensus 295 -~kr~LlVlDdv~~ 307 (1416)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345777887643
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.66 E-value=0.11 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998864
No 323
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.65 E-value=0.17 Score=62.56 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=72.2
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...++|....+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ... ..+.+++..-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALSE--TLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCCH--HHHHH
Confidence 45799999999998888754321 234567999999999999999987421 222 234455544321 22221
Q ss_pred HHHHhcCCCCCC--CCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEcc
Q 000568 268 ILRCITKQTIDD--SDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTR 334 (1416)
Q Consensus 268 il~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR 334 (1416)
.+.+..... .........+ -....-.|+||+|..-....+..+...+..+. ...|||+||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111111000 0000000000 01234468899998766666666665553321 1358888776
Q ss_pred c
Q 000568 335 N 335 (1416)
Q Consensus 335 ~ 335 (1416)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 324
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.64 E-value=0.15 Score=54.34 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-----CcCHHHHHHHHHHHhcCCC------CCCCCHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-----DFDVIRLTKTILRCITKQT------IDDSDLNLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~------~~~~~~~~~ 285 (1416)
..+++|+|..|+||||+++.+..= ...-.+.+++...+ .....+...++++..+... ...-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999862 22223333333211 2223345566666666432 111222333
Q ss_pred H-HHHHHHhccccEEEEeccccccC-hhhHhhhcccccc--CCCCcEEEEEccchHHHHhhCC
Q 000568 286 Q-EELNKQLSRKKFLLVLDDVWNEN-YNDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIMGT 344 (1416)
Q Consensus 286 ~-~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 344 (1416)
+ -.+.+.|.-+.=+||.|..-+.- ...-..+...+.. ...|-..+..|-+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 34677788889999999874321 1111122222211 2346677888888777776543
No 325
>PRK13695 putative NTPase; Provisional
Probab=94.63 E-value=0.02 Score=58.94 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=94.62 E-value=0.18 Score=57.01 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCC---CCCHHH-HHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTID---DSDLNL-LQEEL 289 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~---~~~~~~-~~~~l 289 (1416)
+..++.++|++|+||||++..++..... ..+ .++.+.. ..+ ...+.++.....++..... ..+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888764321 223 2333432 222 2334455566666543221 122222 22333
Q ss_pred HHHhccccEEEEeccccc
Q 000568 290 NKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 290 ~~~l~~kr~LlVlDdv~~ 307 (1416)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222223888898744
No 327
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.61 E-value=0.1 Score=59.61 Aligned_cols=134 Identities=14% Similarity=0.043 Sum_probs=71.4
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
.++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..... .-...+.+++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999888888765421 2345779999999999999999863211 11123445555432 2222222221
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccch
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQ 336 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~ 336 (1416)
.-.+. ...... .....+. ....=.|+||+|..-.......+...+..+. ...|||+||...
T Consensus 80 ~~~~~-~~g~~~-~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGA-FTGAQK-RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccc-cCCccc-ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11000 000000 0001111 1223358899998776555666655443221 135888887653
No 328
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.25 Score=60.64 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+.+-++|++|.|||.||+++++. ....| +.+... +++... -......+...+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 34568999999999999999999982 33333 222211 111110 11122233334444446
Q ss_pred cccEEEEecccccc------C-h----hhHhhhcccccc--CCCCcEEEEEccchHHHHhh-----CCCCeeeCCCCChh
Q 000568 295 RKKFLLVLDDVWNE------N-Y----NDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIM-----GTAPAYQLKRLSTD 356 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~------~-~----~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~ 356 (1416)
.....|.+|.++.- + . .-...+...+.. ...+..||-||-........ .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 77899999999541 0 0 112223333322 22333445555544332211 22357889999999
Q ss_pred hHHHHHHHhhc
Q 000568 357 DCLSVFTQHSL 367 (1416)
Q Consensus 357 ~~~~lf~~~~~ 367 (1416)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.55 E-value=0.13 Score=56.85 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH--HHHHHHHHHHhcCCCC---CCCCH-HHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV--IRLTKTILRCITKQTI---DDSDL-NLLQEE 288 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~---~~~~~-~~~~~~ 288 (1416)
...+++.++|++|+||||++..++.... ..-..+.+++.. .+.. .+.++...+..+.... ...+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3468999999999999999988886432 222345555543 2322 2333444454443211 11222 222334
Q ss_pred HHHHhccccEEEEecccc
Q 000568 289 LNKQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 289 l~~~l~~kr~LlVlDdv~ 306 (1416)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333444577888763
No 330
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.37 Score=59.76 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=82.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc-----CcEEEEEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-----DLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 264 (1416)
..++||++|++++++.|..... . - -.++|.+|+|||++|.-++... +.+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---N-N--PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-L--------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---N-N--PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-L--------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---C-C--CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-e---------
Confidence 4589999999999999976432 1 1 2367999999999987777631 11111 111111 0
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc---------ChhhHhhhccccccCCCCcEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
++..-+.+... ..+.++....+-+.+ +.++..+++|.+... ..+.-+-+..+|..+ .-++|-.|.
T Consensus 233 --D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT 307 (786)
T COG0542 233 --DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATT 307 (786)
T ss_pred --cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEecc
Confidence 11111111111 233344333333333 345899999998542 011111222222222 135554444
Q ss_pred chHHHHhh-------CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAIM-------GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.-... .....+.+...+.+++..+++-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 32222111 234678899999999999887544
No 331
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.48 E-value=0.072 Score=59.32 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 289 (1416)
+..+++-|+|+.|+||||||..+... .+..-..++|++....++... ++.++.+. ..+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34679999999999999999988874 333345688999888766533 33443321 1234456666666
Q ss_pred HHHhccc-cEEEEecccc
Q 000568 290 NKQLSRK-KFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~k-r~LlVlDdv~ 306 (1416)
...++.. --++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 6666543 4588899884
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.47 E-value=0.29 Score=49.87 Aligned_cols=118 Identities=13% Similarity=0.016 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc-ccc--cC---cEEEEEecCCcCHHHHHHHHHHHhcC-CCCCCCCHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV-QDH--FD---LKAWTCVSNDFDVIRLTKTILRCITK-QTIDDSDLNLLQEEL 289 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l 289 (1416)
-.+++|+|..|.|||||++.+...... .+. ++ .+.++ .+..... ...+.+.+.. ....-...+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 468999999999999999999874321 111 11 12222 2222111 0112222211 111122223333445
Q ss_pred HHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 290 NKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 290 ~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5666667778888886332 112222333333222 356778887766543
No 333
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.47 E-value=0.15 Score=58.17 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...++-|+|.+|+|||++|.+++....... .-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 468999999999999999999976533211 11368999998888877654 4444443
No 334
>PRK05439 pantothenate kinase; Provisional
Probab=94.45 E-value=0.19 Score=55.98 Aligned_cols=82 Identities=17% Similarity=0.059 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH--HHHHhcCCCCCCCCHHHHHHHHHH
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT--ILRCITKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 214 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--il~~l~~~~~~~~~~~~~~~~l~~ 291 (1416)
.+..-+|+|.|.+|+||||+|+.+..-......-..+.-++...-+...+.+.+ ++.. ....+.-+.+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~--kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKR--KGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhcccc--CCCcccccHHHHHHHHHH
Confidence 345789999999999999999988763211101122333443332222222211 1111 112344566666666666
Q ss_pred Hhcccc
Q 000568 292 QLSRKK 297 (1416)
Q Consensus 292 ~l~~kr 297 (1416)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 655554
No 335
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.44 E-value=0.19 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 336
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.41 E-value=0.15 Score=65.17 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=73.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.++...... -...+.+++..-.. ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhhc
Confidence 3689999988888777654321 23467899999999999999998743111 12344455554321 11111222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccC-----------CCCcEEEEEccch
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAG-----------APGSKIIVTTRNQ 336 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~~ 336 (1416)
....+.. .... ......+. ....=.|+||+|..-.......+...+..+ ..+.|||.||...
T Consensus 449 g~~~~~~-~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAF-TGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccc-cccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111100 0000 01111121 123457999999876655555665554322 1345888888653
No 337
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.41 E-value=0.043 Score=55.70 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC--CCCC-CCHHHHHHHHHHHhcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ--TIDD-SDLNLLQEELNKQLSR 295 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--~~~~-~~~~~~~~~l~~~l~~ 295 (1416)
++.|.|.+|+||||+|..+...... .+.++.-....+ .+..+.|....... .+.. .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6889999999999999999864211 233443333332 34444544333222 1111 1112233344443333
Q ss_pred ccEEEEeccc
Q 000568 296 KKFLLVLDDV 305 (1416)
Q Consensus 296 kr~LlVlDdv 305 (1416)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237899987
No 338
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.33 E-value=0.18 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+...+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.31 E-value=0.28 Score=54.93 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=36.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHh
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCI 272 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 272 (1416)
..++.|.|.+|+||||++.+++.... ..+=..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 46888999999999999998876432 221245788877653 455555555543
No 340
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.03 Score=58.61 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=16.4
Q ss_pred CCcceEEEccc--cCCCcCcccccCcCccceeeeecCCCC
Q 000568 1203 AKLTRLEISEC--ERLEALPRGLRNLTCLQHLTIGDVLSP 1240 (1416)
Q Consensus 1203 ~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~ls~n~~~ 1240 (1416)
|+|+.|.++.| +....++.....+|+|++|++++|.+.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444 333333333333445555555555443
No 341
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.21 E-value=0.16 Score=53.61 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLNL---- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 284 (1416)
-..++|+|.+|+|||+|++++.+... -+.++++-+++.. .+.++.+++...-..+ ..+......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35789999999999999999988542 2345777777653 4445555553321111 111111111
Q ss_pred -HHHHHHHHh--ccccEEEEeccc
Q 000568 285 -LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 -~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
..-.+.+++ +++++|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223333 589999999999
No 342
>PRK13948 shikimate kinase; Provisional
Probab=94.16 E-value=0.39 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+.|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999874
No 343
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.15 E-value=0.33 Score=61.09 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=80.5
Q ss_pred eeeeehhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
++.|.+..++++.+.+..... .+..-.+-|.++|++|.|||++|+.++... ...| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 466776666555554322110 001113348899999999999999998743 2222 2222211 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhHhh----hcccccc--CCCCcE
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSRPLEA--GAPGSK 328 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~gs~ 328 (1416)
.. + .. ......+...+...-...+.+|++|+++... ...+.. +...+.. ...+.-
T Consensus 222 ~~-~---~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE-M---FV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH-h---hh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 10 0 00 0112223333333334567899999996531 011211 2111111 123445
Q ss_pred EEEEccchHHHHh-h----CCCCeeeCCCCChhhHHHHHHHhhc
Q 000568 329 IIVTTRNQEVVAI-M----GTAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 329 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
||.||...+.... . .....+.++..+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5567776553322 1 1235678888888888888887763
No 344
>PRK07667 uridine kinase; Provisional
Probab=94.14 E-value=0.065 Score=56.11 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+.|.+.+... .+...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666443 234589999999999999999999874
No 345
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.84 Score=47.07 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=95.3
Q ss_pred eeeee-hhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 191 KVYGR-ETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 191 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
++||+ +..+++|.+.+.-.-. -+-.+++-+.++|++|.|||-||++|++. ....|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---
Confidence 35665 6666666665532111 02345677889999999999999999873 334556776632
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----ccccEEEEeccccccC-----------hhh---Hhhhcccccc--
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQL----SRKKFLLVLDDVWNEN-----------YND---WVDMSRPLEA-- 322 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~-----------~~~---~~~~~~~l~~-- 322 (1416)
+.+..+ ++ ..+.+++.+ ..-.-.|..|.+++.. .+. .-++...+..
T Consensus 217 -lvqk~i----ge---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 217 -LVQKYI----GE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHHHh----hh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 222111 11 111222221 2446788888886521 011 1112222222
Q ss_pred CCCCcEEEEEccchHHHHh--hCC---CCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 323 GAPGSKIIVTTRNQEVVAI--MGT---APAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 323 ~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
..+.-+||..|..-++... +.+ .+.++.++-+++.-.++++-+.-. .+..---++..+|+++....|.---++-
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCCCccchhhhhh
Confidence 2345678776665444322 122 345777777777767777655421 1111112355554444433333334444
Q ss_pred HHHHHh
Q 000568 398 TLGGLL 403 (1416)
Q Consensus 398 ~~~~~l 403 (1416)
+-|++.
T Consensus 362 teagm~ 367 (404)
T KOG0728|consen 362 TEAGMY 367 (404)
T ss_pred hhhhHH
Confidence 445443
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.33 Score=51.88 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccc-ccc---c-------c---CcEEEEEecCCc------CH----------------
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHR-VQD---H-------F---DLKAWTCVSNDF------DV---------------- 261 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------f---~~~~wv~~~~~~------~~---------------- 261 (1416)
.+++|+|+.|.|||||.+.+.--.. .++ . + ..+.||+-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999986211 000 0 1 235555421111 11
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCCHHHHH-HHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCC
Q 000568 262 ------IRLTKTILRCITKQT-----IDDSDLNLLQ-EELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 262 ------~~~~~~il~~l~~~~-----~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~ 325 (1416)
.+...+.++..+... ...-+..+.+ -.+.+.|..+.=|+|||.- +.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 234444555554332 1222333444 3467788889999999964 333333344444444443
Q ss_pred CcEEEEEccchHHHHh
Q 000568 326 GSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 326 gs~iivTtR~~~v~~~ 341 (1416)
|.-||++|-+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999988654433
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.10 E-value=0.039 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 348
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.10 E-value=0.063 Score=59.64 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..|+|.++.++++++.+.......+..-+|+.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998766545567899999999999999999988763
No 349
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.19 Score=51.61 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--CC---CCC--------CC-H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--QT---IDD--------SD-L 282 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~---~~~--------~~-~ 282 (1416)
-.+++|+|..|.|||||++.++.... .....+++.-....... ....+.++- +. ... -+ .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 46899999999999999999986421 22333333211100000 011111110 00 000 11 1
Q ss_pred HHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 283 NLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 283 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
+...-.+.+.+..++=++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22223466677778889999987442 122223333333221 236778888888765543
No 350
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.07 E-value=0.25 Score=53.72 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...+++.|.|.+|+|||++|.++.... . ..-..++|++..+. ...+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCC--HHHHHHH
Confidence 356899999999999999999876532 1 22456888887653 4444443
No 351
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=1.3 Score=53.70 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=60.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.++=|.++-+.+|.+.+.-.-.. +-.+.+-|.++|++|.|||-+|++|+... . ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH----H
Confidence 35667888888888876431110 11234567899999999999999999742 2 334555443 2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 307 (1416)
++...+. .+.+.+.+.+.+.=..+.++|.+|.+++
T Consensus 741 LLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHhc---------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 3322221 1233344445555456799999999976
No 352
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.04 E-value=0.066 Score=52.72 Aligned_cols=36 Identities=28% Similarity=0.068 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC 254 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 254 (1416)
..||.|.|.+|+||||||+++.... ...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEec
Confidence 4689999999999999999999843 33333344543
No 353
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.03 E-value=0.19 Score=51.72 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcCCC--CC-------CCCHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITKQT--ID-------DSDLNLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~--~~-------~~~~~~~ 285 (1416)
-.+++|+|..|.|||||++.+..-.. .....+++.-.. ........+.+. .+.... .. -...+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 35899999999999999999986321 222333322110 011111111110 000000 00 0111222
Q ss_pred HHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHH
Q 000568 286 QEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 286 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 340 (1416)
.-.+.+.+-.+.=++++|+.... +......+...+.. ...|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33455556667778899987432 11222223333322 123667888888776554
No 354
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=0.3 Score=60.91 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+|++++|+.|+||||++.+++........-..+..+.... .....+.++...+.++.......+.+++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 57999999999999999998886432121112344444332 1224456666666666554444566666655554 344
Q ss_pred ccEEEEecccc
Q 000568 296 KKFLLVLDDVW 306 (1416)
Q Consensus 296 kr~LlVlDdv~ 306 (1416)
+. +|++|=.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 77778664
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.99 E-value=0.038 Score=53.66 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.95 E-value=0.053 Score=57.98 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 357
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.94 E-value=0.25 Score=57.61 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC------CCCCCCH-----HHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ------TIDDSDL-----NLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~-----~~~ 285 (1416)
-..++|+|..|+|||||++.+..... ....+++.......++.+.....+...... ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999998876322 222344443323444554444444332111 0111111 112
Q ss_pred HHHHHHHh--ccccEEEEeccc
Q 000568 286 QEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 286 ~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.-.+.+++ +++++|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 478999999999
No 358
>PRK06547 hypothetical protein; Provisional
Probab=93.93 E-value=0.078 Score=53.97 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 359
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.93 E-value=0.37 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..|+|+||+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999998764
No 360
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.88 E-value=0.14 Score=58.39 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=33.2
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+||+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654321 2345789999999999999999863
No 361
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.80 E-value=0.14 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+|+|.|++|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998743
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.086 Score=53.85 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999985
No 363
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.75 E-value=0.17 Score=57.95 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=36.5
Q ss_pred CeeeeehhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45888888888877665431 0001112467889999999999999999874
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.74 E-value=0.056 Score=57.53 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999864
No 365
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.0048 Score=64.13 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=69.5
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCC--CCCCCCcceEE
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEG--GLPCAKLTRLE 1209 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~L~~L~ 1209 (1416)
+.+.|+..+|.+.+.- ....++.|++|.||-|.+...-| +..+++|++|+|..| .+.++.+- ...+|+|++|.
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 6788999999887643 35688999999999999876544 778899999999854 33333221 12367888888
Q ss_pred EccccCCCcCcc-----cccCcCccceee
Q 000568 1210 ISECERLEALPR-----GLRNLTCLQHLT 1233 (1416)
Q Consensus 1210 l~~n~~~~~~p~-----~l~~l~~L~~L~ 1233 (1416)
|..|+-.+..+. .+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887765533 345577777775
No 366
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.71 E-value=0.058 Score=57.58 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999874
No 367
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.71 E-value=0.34 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 368
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.69 E-value=0.73 Score=47.20 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=67.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEec-------------------CCc------------------
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS-------------------NDF------------------ 259 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------ 259 (1416)
..|++|+|+.|+|||||.+-+-.=. ..=.+.+|+.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4699999999999999999886522 222334444321 111
Q ss_pred -------CHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccccccC-hhhHhhhcccccc-CC
Q 000568 260 -------DVIRLTKTILRCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-YNDWVDMSRPLEA-GA 324 (1416)
Q Consensus 260 -------~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~-~~ 324 (1416)
..++...++++..+.... .-+...+..-.|.+.|.-++=++.+|..-+.- .+.-.++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 123344444444443211 11223344456788888888899999985541 1222223222222 23
Q ss_pred CCcEEEEEccchHHHHhh
Q 000568 325 PGSKIIVTTRNQEVVAIM 342 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~~~ 342 (1416)
.|-.+|+.|-....|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 465666667665555554
No 369
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.68 E-value=0.3 Score=56.95 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+++++|+.|+||||++..+.........-+.+.++.... .....+.+....+.++.......+..++...+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999998876321111123344443322 2233334444555554443333444444433333 34
Q ss_pred cccEEEEeccc
Q 000568 295 RKKFLLVLDDV 305 (1416)
Q Consensus 295 ~kr~LlVlDdv 305 (1416)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 45666765
No 370
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.66 E-value=0.063 Score=59.26 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCC
Q 000568 200 KEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDD 279 (1416)
Q Consensus 200 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~ 279 (1416)
..+++.+... -+-+.++|+.|+|||++++.......-. .| ...-++.+...+...++ ++++.-.......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC
Confidence 4455555543 2566899999999999999988642211 11 13345555543333332 2222111000000
Q ss_pred CCHHHHHHHHHHHhccccEEEEeccccccC
Q 000568 280 SDLNLLQEELNKQLSRKKFLLVLDDVWNEN 309 (1416)
Q Consensus 280 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 309 (1416)
. + .--.+|+.++.+||+.-..
T Consensus 93 -~-------~-gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 93 -V-------Y-GPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp -E-------E-EEESSSEEEEEEETTT-S-
T ss_pred -C-------C-CCCCCcEEEEEecccCCCC
Confidence 0 0 0013678899999995543
No 371
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.62 E-value=0.2 Score=55.11 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN 257 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 257 (1416)
..+++.|.|.+|+|||++|.+++.... + .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 467999999999999999999866321 1 234678888764
No 372
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.62 E-value=0.036 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=9.2
Q ss_pred ccEEecCCCCchhhchHhhc
Q 000568 630 LHTLLLEDCDRLKTLCADIG 649 (1416)
Q Consensus 630 L~~L~L~~~~~~~~lp~~i~ 649 (1416)
|++|||++| .++.+|.+|+
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555554 3335554443
No 373
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.61 E-value=0.37 Score=57.17 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+|++++|+.|+||||++.+++.....+..-..+..+.... .....+.++...+.++.......+..+....+. .+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 47999999999999999999987432222112344554432 123334444445554433222222222222222 2334
Q ss_pred ccEEEEecccc
Q 000568 296 KKFLLVLDDVW 306 (1416)
Q Consensus 296 kr~LlVlDdv~ 306 (1416)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 466777763
No 374
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.60 E-value=0.18 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999874
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.60 E-value=0.22 Score=57.27 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999875
No 376
>PTZ00301 uridine kinase; Provisional
Probab=93.58 E-value=0.084 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 377
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.73 Score=47.68 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=36.2
Q ss_pred HHHHHhccccEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHHhhCCCCee
Q 000568 288 ELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVAIMGTAPAY 348 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 348 (1416)
.+.+.+--++=+.|||..++- +.+..+.+...+.. ...|+.+++.|-.+.++....+..++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444446679999998764 23333333332221 23477788888888888877654443
No 378
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.50 E-value=0.38 Score=48.34 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE---ecCCcCHHHHHHHHHHHhc-----CC-CCCCCC-------
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC---VSNDFDVIRLTKTILRCIT-----KQ-TIDDSD------- 281 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~il~~l~-----~~-~~~~~~------- 281 (1416)
..|-|++-.|.||||.|..++. +..++=..+..+. ..........+... .+. .. .....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5777888899999999977765 3333222233232 22122333343332 111 00 000111
Q ss_pred HHHHHHHHHHHhccccE-EEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 282 LNLLQEELNKQLSRKKF-LLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
..+.....++.+...+| ++|||.+-.. ..-+.+.+...+.....+..||+|-|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233444555555554 9999998421 1123335555555555677999999985
No 379
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.39 E-value=0.3 Score=56.76 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+.... ..+.++.+-+++... +.++..+++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998632 224556666666543 344555544331111 01111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344555 588999999999
No 380
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.39 E-value=0.2 Score=48.59 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC-CCCcceEEEccccCCCcCcccccCcCc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRLEISECERLEALPRGLRNLTC 1228 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~p~~l~~l~~ 1228 (1416)
.+..+++|+.+.+.++ +.......+.++++|+.+.+.+ .+..++...+. +++|+.+.+..+ +...-...+.++ +
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 3455555555555543 2222233444554555555532 33333333333 455555555433 221222234443 4
Q ss_pred cceeeeec
Q 000568 1229 LQHLTIGD 1236 (1416)
Q Consensus 1229 L~~L~ls~ 1236 (1416)
|+.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 55554443
No 381
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.37 E-value=0.3 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.+..+|.++||+|.||||..+.++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456788899999999999999998753
No 382
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.28 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
No 383
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.31 E-value=0.05 Score=50.52 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998874
No 384
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.29 E-value=0.19 Score=48.72 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=47.3
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC-CCCcceEEEccccCCCcCcccccCcCc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRLEISECERLEALPRGLRNLTC 1228 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~p~~l~~l~~ 1228 (1416)
.|..+++|+.+.+.. .+.......+..+++|+.+.+.+ .+..++...+. +++|+.+.+.+ .....-...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc-ccccccccccccccc
Confidence 355666777777764 33333345567777788887753 35555544333 55677777754 222222335556777
Q ss_pred cceeeeecCCCCCCCCCCCCCCCCCcceeEec
Q 000568 1229 LQHLTIGDVLSPERDPEDEDRLPTNLHSLNID 1260 (1416)
Q Consensus 1229 L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~ 1260 (1416)
|+.+++..+ +..+....+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~--~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC--NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT---T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC--CceEEEEC
Confidence 777777554 344444444332 45555443
No 385
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.27 E-value=0.13 Score=49.18 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR 242 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 242 (1416)
++.+++.+.+...- ....+|.+.|.-|+||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45555555554321 1235899999999999999999998643
No 386
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.2 Score=56.15 Aligned_cols=83 Identities=24% Similarity=0.212 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 290 (1416)
.-.++.|-|-+|||||||..++..+. ...- .+.+|+-.+... ..+--++.++... ....+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 45799999999999999999999853 3222 577776555432 2233344554322 13345566555555
Q ss_pred HHhccccEEEEeccccc
Q 000568 291 KQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~ 307 (1416)
+ .+.-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 4 5778999999854
No 387
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.26 E-value=0.27 Score=52.37 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HhhccCChHHHHHHHHHHHHHhhhhhHHHHHH
Q 000568 33 QIQADLVKWKRMLVKIKAVLDDA-EEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQ 87 (1416)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~l~~a-~~~~~~~~~~~~wl~~~r~~ayd~ed~ld~~~ 87 (1416)
-++.+++-++.+++.+|.||+.. ++..........++.++-..||++|.++|.+.
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45899999999999999999986 44333333488999999999999999999973
No 388
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.23 E-value=0.046 Score=51.10 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccC
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFD 248 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 248 (1416)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 579999999999999999983 444553
No 389
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.064 Score=54.56 Aligned_cols=25 Identities=48% Similarity=0.477 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+|+|-||-|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4799999999999999999999854
No 390
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.18 E-value=0.37 Score=55.71 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTI-----DDSDLNLLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 290 (1416)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+ +.-++.++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 357999999999999999999986432 22245777766443 2222 222344443211 2234444444443
Q ss_pred HHhccccEEEEecccc
Q 000568 291 KQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~ 306 (1416)
+ .+.-+||+|.+.
T Consensus 156 ~---~~~~lVVIDSIq 168 (372)
T cd01121 156 E---LKPDLVIIDSIQ 168 (372)
T ss_pred h---cCCcEEEEcchH
Confidence 2 355678888883
No 391
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.17 E-value=0.54 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.13 E-value=0.45 Score=52.25 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--C-
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--Q- 275 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~- 275 (1416)
.+.+...+... +...-++|+|+.|.|||||.+.+..... .....+++.-.. ....+...++...... +
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccc
Confidence 44445555432 2357899999999999999999987432 222333332100 0000111222222211 1
Q ss_pred C----CCC-CCHHHHHHHHHHHh-ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 276 T----IDD-SDLNLLQEELNKQL-SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 276 ~----~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
. .+. ....... -+...+ ...+=++++|.+-.. +.+..+...+ ..|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHH-HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 0 000 0111111 122222 246779999998543 4455554444 24778999998766543
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.26 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46788999999999999999874
No 394
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.00 E-value=0.5 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 395
>PRK04328 hypothetical protein; Provisional
Probab=92.99 E-value=0.32 Score=53.30 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF 259 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 259 (1416)
.-.++.|.|.+|+|||+||.++.... . ..-..++|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH
Confidence 46799999999999999999887642 1 223567888876643
No 396
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.98 E-value=0.38 Score=56.41 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN---- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 283 (1416)
.-+.++|+|..|+|||||+.++....... +=+.++++-+++.. .+.++.+++...=... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35678999999999999999887643221 11356677666653 3455555555431111 01111111
Q ss_pred -HHHHHHHHHh---ccccEEEEeccc
Q 000568 284 -LLQEELNKQL---SRKKFLLVLDDV 305 (1416)
Q Consensus 284 -~~~~~l~~~l---~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 2223455666 578999999999
No 397
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.97 E-value=0.85 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+..++.|.|.+|+|||||+..+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999874
No 398
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.97 E-value=0.19 Score=59.06 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDL----- 282 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~----- 282 (1416)
+-+.++|+|.+|+|||||+.++...... .+-+.++++-+++.. .+.++..++...-... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3467899999999999999988875432 255777777776653 3445555554321111 0111111
Q ss_pred HHHHHHHHHHh---ccccEEEEeccc
Q 000568 283 NLLQEELNKQL---SRKKFLLVLDDV 305 (1416)
Q Consensus 283 ~~~~~~l~~~l---~~kr~LlVlDdv 305 (1416)
......+.+++ +++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12223455665 378999999999
No 399
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.94 E-value=0.29 Score=61.20 Aligned_cols=85 Identities=20% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 289 (1416)
...+++-|+|.+|+||||||.+++... ...-..++|++..+.++. ..+++++... ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 346899999999999999998876532 222355789988777663 2556665432 1234455666666
Q ss_pred HHHhcc-ccEEEEecccc
Q 000568 290 NKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~-kr~LlVlDdv~ 306 (1416)
...++. +--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 665544 45689999984
No 400
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.92 E-value=0.85 Score=55.79 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=35.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|+...+.++.+.+.... .....|.|.|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888777664321 12345789999999999999999874
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.91 E-value=0.41 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.33 Score=48.96 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.+++|+|..|.|||||++.+..... .....+++........ ........+.-.. +-...+...-.+.+.+....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999987432 2344444432211110 0001111111100 01122233334556666667
Q ss_pred EEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 298 FLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 298 ~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
=++++|+.... +......+...+... ..+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999988532 122223333333221 125678888877665554
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.86 E-value=0.37 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
...+|.++|.+|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999888643
No 404
>PRK03839 putative kinase; Provisional
Probab=92.83 E-value=0.08 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999843
No 405
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.80 E-value=0.37 Score=56.22 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQ-------TIDDSDLNL---- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 284 (1416)
...++|+|..|+|||||++.+..... . +..+.+...+ ...+.++..+.+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999998886432 1 2222232333 333444554444332111 111111111
Q ss_pred -HHHHHHHHh--ccccEEEEeccc
Q 000568 285 -LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 -~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
....+.+++ +++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222345555 578999999999
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.80 E-value=0.58 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999874
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.80 E-value=0.25 Score=56.70 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=37.7
Q ss_pred CCeeeeehhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..++|.+..++.+..++... ..........+.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345889999998888777431 0001112467899999999999999999874
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.78 E-value=0.19 Score=52.82 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCH---HHHHHHHHHH-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDL---NLLQEELNKQ- 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~---~~~~~~l~~~- 292 (1416)
.+++.|.|+.|.||||+.+.+....-. . ....+|.+.. ....+...+...++......... ..-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a--~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-A--QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-H--HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 478999999999999999988643211 0 1111221111 00122222232222221101111 0001111222
Q ss_pred -hccccEEEEeccccccC-hhh----HhhhccccccCCCCcEEEEEccchHHHHhhCC
Q 000568 293 -LSRKKFLLVLDDVWNEN-YND----WVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGT 344 (1416)
Q Consensus 293 -l~~kr~LlVlDdv~~~~-~~~----~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~ 344 (1416)
+..++-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 23567899999974321 112 1123333332 37899999999988876543
No 409
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.76 E-value=0.62 Score=51.08 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS- 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 294 (1416)
..+++++|.+|+||||+++.+..... ..=..+.+++..... .....++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 46999999999999999998876321 111234555543221 22223333333333332223455555544443322
Q ss_pred cccEEEEeccccc
Q 000568 295 RKKFLLVLDDVWN 307 (1416)
Q Consensus 295 ~kr~LlVlDdv~~ 307 (1416)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2346788888744
No 410
>PRK04040 adenylate kinase; Provisional
Probab=92.74 E-value=0.089 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 411
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.73 E-value=0.5 Score=51.27 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc--ccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH---
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV--QDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN--- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 283 (1416)
-+.++|.|-.|+|||+|+..+.++... +++-+.++++-+++.. .+.++..++.+.=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 467899999999999999998875431 1234677888887764 3445555554431111 01111111
Q ss_pred --HHHHHHHHHhc---cccEEEEeccc
Q 000568 284 --LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 284 --~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.....+.++++ ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12233555553 68999999999
No 412
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.71 E-value=0.062 Score=56.37 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=50.9
Q ss_pred cCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCc--ccccCCCCCCCCcceEEEccccCCC-cCcccccCcCcc
Q 000568 1153 NNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNL--VSFSEGGLPCAKLTRLEISECERLE-ALPRGLRNLTCL 1229 (1416)
Q Consensus 1153 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l--~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~l~~l~~L 1229 (1416)
.+..|+.|.+.++.++.. ..+-.+++|+.|.++.|... ..++.-.-.+|+|++|++++|++.. +--..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344455555555554432 23455677777777755322 2222112226888888888888752 111245567788
Q ss_pred ceeeeecCCCCCC
Q 000568 1230 QHLTIGDVLSPER 1242 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~ 1242 (1416)
..|++.+|..++.
T Consensus 119 ~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 119 KSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcccCCcccc
Confidence 8888888866553
No 413
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.70 E-value=0.18 Score=47.78 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+-|.|.|-+|+||||+|.+++.... .-|+++++-.....+....=++. ....-+.+.+.+.+..++.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 35688999999999999999986321 34566655322222221111110 112345566666666665543
No 414
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.68 E-value=0.62 Score=54.61 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHHccccc-----ccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC--------CCCCC
Q 000568 216 GFSVIPIIGMGGLGKTTLA-QLVYNDHRV-----QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT--------IDDSD 281 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~ 281 (1416)
+-+.++|.|..|+|||+|| -.+.+...+ .++-+.++++-+++..+...-+.+.+++-+.-. .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 555654322 123456778888877654443444444443110 11111
Q ss_pred HHH-----HHHHHHHHh--ccccEEEEecccc
Q 000568 282 LNL-----LQEELNKQL--SRKKFLLVLDDVW 306 (1416)
Q Consensus 282 ~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 306 (1416)
..+ ....+.+++ +++.+|+|+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 122344444 4789999999993
No 415
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.67 E-value=0.096 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999863
No 416
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.63 E-value=0.48 Score=49.80 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccccccccc--------CcEEEEEecCC
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--------DLKAWTCVSND 258 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 258 (1416)
.++.|+|++|+||||++.++.........| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999999988754332222 25777776665
No 417
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.63 E-value=1.1 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.62 E-value=0.48 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998874
No 419
>PRK05973 replicative DNA helicase; Provisional
Probab=92.61 E-value=0.5 Score=50.52 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...++.|.|.+|+|||++|.++....- + .-..+++++.... ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHH
Confidence 356899999999999999999876432 2 2234667766554 3344444
No 420
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.60 E-value=0.57 Score=50.84 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
...++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 46899999999999999999876532 1 12346788876443
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.59 E-value=0.53 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998744
No 422
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.59 E-value=0.16 Score=56.41 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=79.5
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--cc---CcEEE
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-----------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HF---DLKAW 252 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f---~~~~w 252 (1416)
.-+..|-..+...|.+.+...... .-....+++|+|..|+||||+.+++........ .| .+.+-
T Consensus 370 ~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~ 449 (593)
T COG2401 370 ELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449 (593)
T ss_pred eeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCcee
Confidence 334556667777777766322110 012345899999999999999999876432111 11 11111
Q ss_pred EE---------ecC--CcCHHHHHHHH-------------HHHhcCCC--------CCCCCHHHHHHHHHHHhccccEEE
Q 000568 253 TC---------VSN--DFDVIRLTKTI-------------LRCITKQT--------IDDSDLNLLQEELNKQLSRKKFLL 300 (1416)
Q Consensus 253 v~---------~~~--~~~~~~~~~~i-------------l~~l~~~~--------~~~~~~~~~~~~l~~~l~~kr~Ll 300 (1416)
+. -.- .++...++..+ +...+..+ .+-.+...-...|.+.+.++.-++
T Consensus 450 vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 450 VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 11 011 11211233222 22222211 011222223345777778887888
Q ss_pred EeccccccChhhHhh--hcccccc--CCCCcEEEEEccchHHHHhhCCCC
Q 000568 301 VLDDVWNENYNDWVD--MSRPLEA--GAPGSKIIVTTRNQEVVAIMGTAP 346 (1416)
Q Consensus 301 VlDdv~~~~~~~~~~--~~~~l~~--~~~gs~iivTtR~~~v~~~~~~~~ 346 (1416)
+.|..... .+.... +...+.. ...|+-+++.|+.+++.+.+....
T Consensus 530 ~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 530 LIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred Ehhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 98987432 111111 1122221 225778888888888888775543
No 423
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.29 Score=54.10 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=32.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++.|.++.++-|.+...-.-- .-...-+-|..+|++|.|||-||++|+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 3466666666555554321100 01123467889999999999999999983
No 424
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.54 E-value=0.22 Score=58.75 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEE-EEEecCCcC-HHHHHHHHHHHhcCCCCCCCC-----HHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKA-WTCVSNDFD-VIRLTKTILRCITKQTIDDSD-----LNLLQEE 288 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~-----~~~~~~~ 288 (1416)
.-....|+|++|+|||||++.+++.... .+-++.+ .+-+.+... +.++.+.+-.++.....+... ...+.-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999884321 2223333 344555432 222222221111111112111 1222233
Q ss_pred HHHHh--ccccEEEEeccc
Q 000568 289 LNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 289 l~~~l--~~kr~LlVlDdv 305 (1416)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 44555 588999999999
No 425
>PRK00625 shikimate kinase; Provisional
Probab=92.53 E-value=0.09 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.++||+|+||||+|+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 426
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.46 E-value=0.87 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 427
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.45 E-value=0.2 Score=54.20 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC---------------CCC--
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ---------------TID-- 278 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~-- 278 (1416)
...++.|.|.+|+|||++|.++.... .+..=..++|++..+.. ..+.+.+ +.++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEecccccc
Confidence 45799999999999999999877532 11112457788876543 3333332 233211 000
Q ss_pred ---CCCHHHHHHHHHHHhcc-ccEEEEeccc
Q 000568 279 ---DSDLNLLQEELNKQLSR-KKFLLVLDDV 305 (1416)
Q Consensus 279 ---~~~~~~~~~~l~~~l~~-kr~LlVlDdv 305 (1416)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666666553 3467888876
No 428
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=1.1 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998764
No 429
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.40 E-value=1.1 Score=43.71 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCCCcEE
Q 000568 260 DVIRLTKTILRCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+.....+..+++++.... +-...++..-.+.+.+...+-+++-|.- +...-+...++...+. ...|...
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 455667777877765421 2234455566788888888888888854 3222223333333332 3468888
Q ss_pred EEEccchHHHHhhCC
Q 000568 330 IVTTRNQEVVAIMGT 344 (1416)
Q Consensus 330 ivTtR~~~v~~~~~~ 344 (1416)
+..|-++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999988753
No 430
>PF13479 AAA_24: AAA domain
Probab=92.37 E-value=0.34 Score=51.61 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46789999999999999665 34556655444
No 431
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.35 E-value=0.35 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+.+.|++|+||||+++.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998643
No 432
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.35 E-value=0.2 Score=57.57 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccc----ccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRV----QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 291 (1416)
..+=+.|||..|.|||.|.-.+|+...+ +-||. ....++-+.+..-...... +..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHHH
Confidence 4678999999999999999999986433 23442 2333333333221111222 333445
Q ss_pred HhccccEEEEeccccccChhhHhhhcccccc-CCCCcEEEEEccch
Q 000568 292 QLSRKKFLLVLDDVWNENYNDWVDMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 292 ~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
.+.++..||.||.+.-.+..+---+...|.. ...|. |||+|-+.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 5566677999998855443332222222222 23454 45555443
No 433
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.32 E-value=0.21 Score=46.67 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=32.9
Q ss_pred eeeehhHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 192 VYGRETEKKEIVELLLRDDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++|..-..+.+++.+.+--. ....+.-|++.+|.+|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45555444444444432111 13456789999999999999999888875
No 434
>PRK15453 phosphoribulokinase; Provisional
Probab=92.28 E-value=0.57 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
No 435
>PRK06217 hypothetical protein; Validated
Probab=92.27 E-value=0.22 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999754
No 436
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.26 E-value=0.21 Score=52.94 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
+..++++.+... .++..+|+|.|+||+|||||..++....+.+++=-.++=|+-|..++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 445566666543 235689999999999999999998875443322223344444555543
No 437
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.22 E-value=0.79 Score=51.30 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=34.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTI 268 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 268 (1416)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4588999999999999999998742 33567788777654 334444443
No 438
>PRK08149 ATP synthase SpaL; Validated
Probab=92.22 E-value=0.43 Score=55.63 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCC-------CCCCCCH-----H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQ-------TIDDSDL-----N 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 283 (1416)
...++|+|..|+|||||++.++.... -+.++...+... .++.++..+........ ..+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46889999999999999999986322 233333444333 34555555555532211 1111111 1
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ ++|++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223344444 588999999999
No 439
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.98 Score=54.52 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=91.1
Q ss_pred ccCCeeeeehhHHHHH---HHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 187 VNEAKVYGRETEKKEI---VELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
+.-.++.|.|+.++++ ++.|.+... -+..-++-+..+|++|.|||.||++++....+- | .+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-
Confidence 3445688988666555 455543321 012336678899999999999999999854332 2 1111110
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc----------ChhhHhhhccc----cccCC--
Q 000568 261 VIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE----------NYNDWVDMSRP----LEAGA-- 324 (1416)
Q Consensus 261 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~~~~~----l~~~~-- 324 (1416)
. -++.-. .......+.+.+..+.-++.|++|.++.. ..++++..+.. ...+.
T Consensus 219 F----VemfVG--------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 F----VEMFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred h----hhhhcC--------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0 000000 01112223344444556789999988542 11233332222 22222
Q ss_pred CCcEEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHH
Q 000568 325 PGSKIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 395 (1416)
.|-.|+..|-.++|... ++ ..+.+.++..+-..-.++++-++-...- ...-.+.. |++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCHHH----HhhhCCCcccc
Confidence 23344444444445422 12 2345666666656666777755532221 11222333 77777776533
No 440
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.21 E-value=0.22 Score=58.13 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDL----- 282 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~----- 282 (1416)
....++|+|..|+|||||++.++.... -+.++++-+++... +.+...+.+..-+.. ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987432 23455565655443 334444444332111 0111111
Q ss_pred HHHHHHHHHHh--ccccEEEEeccc
Q 000568 283 NLLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 283 ~~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
......+.+++ +++++|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11222344555 588999999999
No 441
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.21 E-value=0.79 Score=51.56 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+..... -+..+..-+.. ..++.+.....+..-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999887432 12333444433 334555555554432211 11111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222234444 588999999998
No 442
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.21 E-value=0.82 Score=51.71 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=33.1
Q ss_pred eeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
++++++++.+|+..++...+-..--.. ...-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887763222111 0122445666777789998654
No 443
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.20 E-value=2 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=19.8
Q ss_pred CcEEEEEEcCCCCcHH-HHHHHHHc
Q 000568 216 GFSVIPIIGMGGLGKT-TLAQLVYN 239 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKT-tLa~~v~~ 239 (1416)
....+.++|..|+||| |||+++..
T Consensus 178 P~~r~vL~Ge~GtGKSiaL~qa~h~ 202 (461)
T KOG3928|consen 178 PVKRFVLDGEPGTGKSIALAQAVHY 202 (461)
T ss_pred cceEEEEeCCCCCchhhHHHHHHHH
Confidence 3567789999999999 78877765
No 444
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.14 E-value=0.097 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 445
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.13 E-value=1.1 Score=60.62 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999853
No 446
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.13 E-value=1.1 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999753
No 447
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.11 E-value=1.4 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 448
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.11 E-value=0.016 Score=58.70 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcc
Q 000568 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQT 680 (1416)
Q Consensus 601 l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 680 (1416)
+-......+||++.|++..+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|. ....|..++++++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 34445556788888888888888888888888888884 778888888888888888887776 8888888888888887
Q ss_pred c
Q 000568 681 L 681 (1416)
Q Consensus 681 L 681 (1416)
+
T Consensus 116 ~ 116 (326)
T KOG0473|consen 116 N 116 (326)
T ss_pred h
Confidence 7
No 449
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.05 E-value=1.4 Score=48.63 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-----------ccCcEEEEE-ecCCcCHHHHHH
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-----------HFDLKAWTC-VSNDFDVIRLTK 266 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------~f~~~~wv~-~~~~~~~~~~~~ 266 (1416)
-+++...+..+ .-.....++|+.|+||+++|..++...-... ...-..|+. ....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34555555432 2245777999999999999988876432110 011111111 1000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVA 340 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 340 (1416)
..-.++++. .+.+.+ .+++=++|+|+++.-+...++.++..+..-..++.+|++|.+ ..+..
T Consensus 73 -----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001223322 222222 355568899999887778888888888765567776666665 44433
Q ss_pred hh-CCCCeeeCCCC
Q 000568 341 IM-GTAPAYQLKRL 353 (1416)
Q Consensus 341 ~~-~~~~~~~l~~L 353 (1416)
.. .-...+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 32 22244566554
No 450
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=0.019 Score=59.91 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=62.9
Q ss_pred hhcccCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchH--hhcccccCceeecCCccccccccCC--
Q 000568 596 HQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCA--DIGNLIKLHHLKNSNTISLQEMPLR-- 671 (1416)
Q Consensus 596 ~~~~~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~-- 671 (1416)
.++.-+.+++.|++|.||-|.|++|-. +..+++|+.|+|+.| .+..+-+ -+.+|++|+.|-|..|.....-+..
T Consensus 32 ~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 32 DDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 444456778899999999999998854 888999999999986 4444432 3678888888888877644444433
Q ss_pred ---cccccCCcccCceEE
Q 000568 672 ---FGKLTCLQTLCNFVV 686 (1416)
Q Consensus 672 ---i~~L~~L~~L~~~~~ 686 (1416)
+.-|+||+.|++..+
T Consensus 110 ~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred HHHHHHcccchhccCccc
Confidence 556677777754443
No 451
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.03 E-value=0.61 Score=54.62 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN---- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 283 (1416)
+-+.++|.|.+|+|||+|+.++..... +.+-+.++|+-+++... +.++.+++...=... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999887532 22346778887776543 444555544321111 01111111
Q ss_pred -HHHHHHHHHhc---cccEEEEeccc
Q 000568 284 -LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 284 -~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.....+.++++ ++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 22234556664 58999999999
No 452
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.00 E-value=0.16 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999874
No 453
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.95 E-value=0.15 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 454
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.92 E-value=0.36 Score=52.34 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcccccccccCcE-EEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHHH--
Q 000568 217 FSVIPIIGMGGLGKTTLA-QLVYNDHRVQDHFDLK-AWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLNL-- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 284 (1416)
-+.++|+|..|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++.+++.+.=... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 555542 122344 556666653 3445555554321111 111111111
Q ss_pred ---HHHHHHHHh--ccccEEEEeccc
Q 000568 285 ---LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 ---~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233433 478999999999
No 455
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.90 E-value=0.1 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 456
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.89 E-value=4.7 Score=44.70 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=46.2
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhhC-CCCeeeCCCCChhhHHHHHHH
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIMG-TAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
+++=++|+||++......++.+...+..-..++.+|++|.+. .+..... ....+.+.. +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999998887788888888887665667777766654 3433322 224567766 56666666653
No 457
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.85 E-value=0.11 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 458
>PLN02348 phosphoribulokinase
Probab=91.84 E-value=0.52 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
....+|+|.|.+|+||||+|+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 459
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.81 E-value=0.99 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 460
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.80 E-value=0.13 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 461
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.79 E-value=0.21 Score=64.90 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=90.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc--ccccccCcEEEEEecCCcC----HH--HHHHHHHHHhcCCCCCCCCHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH--RVQDHFDLKAWTCVSNDFD----VI--RLTKTILRCITKQTIDDSDLNLLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~----~~--~~~~~il~~l~~~~~~~~~~~~~~~ 287 (1416)
...-+.|+|.+|.||||+.+.++-.. +....=+..+++.+..... .. .+..-+...+... ....+...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~----~~~~~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ----GIAKQLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc----CCcchhhH
Confidence 34578999999999999999887532 1111123445544331110 11 1222222222211 11222223
Q ss_pred HHHHHhccccEEEEeccccccChhhH----hhhccccccCCCCcEEEEEccchHHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 288 ELNKQLSRKKFLLVLDDVWNENYNDW----VDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~~~~~~----~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
...++++..++++.+|.++......- ..+.. +...-+.++||+|+|....-....+...+++..+.++.-.....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 33678889999999999876422111 11111 22233578999999875443333333445555555554332222
Q ss_pred --------HhhcCCCCCC---CChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 364 --------QHSLDSRDFS---SNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 364 --------~~~~~~~~~~---~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
...++..... ....+..-..+-.+.....|+++.+.+..-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 1112211100 0001111112233444888999998885544
No 462
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=91.79 E-value=4.5 Score=39.65 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHhhhhhHH
Q 000568 5 GEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRT-DQSVKMWLGDLHNLAFDVEDLL 83 (1416)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~-~~~~~~wl~~~r~~ayd~ed~l 83 (1416)
|+-+++|+++.+++.+...+..........+.-+++|...++.|.-++++.+.-... +..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 444444445555555544444445555667889999999999999999987764322 3333667888999999999999
Q ss_pred HHH
Q 000568 84 EEF 86 (1416)
Q Consensus 84 d~~ 86 (1416)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 987
No 463
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.74 E-value=0.6 Score=59.37 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=70.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.++|....+.++.+....-.. . ..-|.|+|..|+||+++|+.+++... .... .+.|++..-. ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~-~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~p---fv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---S-SFPVLLCGEEGVGKALLAQAIHNESERAAGP---YIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---c-CCCEEEECCCCcCHHHHHHHHHHhCCccCCC---eEEEECCCCC-hHHHHHHh
Confidence 3578998888888777654321 1 23367999999999999999987421 1222 3445554432 12222333
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccc
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRN 335 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~ 335 (1416)
+......... ... ..+. ....=.|+||+|.+-.......+...+..+. ...|||.||..
T Consensus 397 fg~~~~~~~~-~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN-GRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC-CCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 3222110000 000 0000 1123469999998776666666665553321 13467777664
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.67 E-value=1.2 Score=50.76 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe-cCCcCHHHHHHHHHHHhcC
Q 000568 199 KKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV-SNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~ 274 (1416)
.++|++.|...... ....+.||-.+|.-|.||||.|-++++..+- .. ..+.-|.+ -..+...+.++.+.++++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~-~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KG-KKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cC-CceEEEecccCChHHHHHHHHHHHHcCC
Confidence 45666666532211 1245789999999999999999988874332 11 22333322 2234556777888888876
Q ss_pred CCC
Q 000568 275 QTI 277 (1416)
Q Consensus 275 ~~~ 277 (1416)
+..
T Consensus 157 ~~f 159 (451)
T COG0541 157 PFF 159 (451)
T ss_pred cee
Confidence 543
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.66 E-value=0.63 Score=54.41 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQ-------TIDDSDLNL--- 284 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 284 (1416)
....++|+|..|+|||||++.+.... +.+..+++.+++. ..+.+.+.+....=... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999888632 2344555555543 33434444443210000 011111111
Q ss_pred --HHHHHHHHh--ccccEEEEeccc
Q 000568 285 --LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 --~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
....+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344555 478999999999
No 466
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.66 E-value=0.14 Score=50.33 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVY 238 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~ 238 (1416)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 467
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.65 E-value=1.4 Score=47.80 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 468
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.64 E-value=0.14 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 469
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.63 E-value=0.44 Score=58.45 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH-HH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK-TI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-~i 268 (1416)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++.... + .-...+.++++.-.+ ..+. .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~~--~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIPD--DVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCCH--HHHHHHh
Confidence 3589998888888777653221 123477999999999999999875321 1 112234555555331 2222 12
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccch
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQ 336 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~ 336 (1416)
.....+....... .....+. ....=.|+||+|+.-.......+...+..+. ...|||.||...
T Consensus 276 FG~~~~~~~~~~~--~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALE--GKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCccc--CCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1111000000000 0000011 1123457899998766555555555443321 134788877654
No 470
>PF13245 AAA_19: Part of AAA domain
Probab=91.62 E-value=0.29 Score=41.86 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|.|++|.|||+++.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36788899999999955544443
No 471
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.61 E-value=0.7 Score=49.82 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
..++.|.|.+|+||||+|.+++.... +.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 46999999999999999877665321 122 3456666433 344555554
No 472
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.60 E-value=0.45 Score=55.37 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc--ccC---------cEEEEEecCCcCHHHHHHHHHHHhc-CC-------C
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFD---------LKAWTCVSNDFDVIRLTKTILRCIT-KQ-------T 276 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~il~~l~-~~-------~ 276 (1416)
.-+.++|.|-.|+|||||+.++.+...... ..| .++++-+++.....+.+.+.+..-+ .. .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 346789999999999999999987543100 011 4566677776555565555555443 11 0
Q ss_pred CCCCCHH-----HHHHHHHHHhc---cccEEEEeccc
Q 000568 277 IDDSDLN-----LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 277 ~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.+..... .....+.++++ ++++|+++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 12233556665 58999999999
No 473
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.59 E-value=0.3 Score=53.44 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCeeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc
Q 000568 189 EAKVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF 247 (1416)
Q Consensus 189 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 247 (1416)
...+||.....+. ++++.... .-..+.|.|+|++|.|||+||..+.+..-..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4578998766554 56666543 2346889999999999999999998854434344
No 474
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.57 E-value=1.3 Score=53.88 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=33.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|....++++...+..-. ..... +.|.|..|+||+++|+.++..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSDIT-VLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCCCC-EEEECCCCcCHHHHHHHHHHh
Confidence 47888888888777765321 12233 459999999999999999863
No 475
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.56 E-value=0.56 Score=47.88 Aligned_cols=118 Identities=19% Similarity=0.111 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC---cCHHHHHHHHH--HH--hcCC-CCCCCC-------
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTIL--RC--ITKQ-TIDDSD------- 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il--~~--l~~~-~~~~~~------- 281 (1416)
...|-|+|..|-||||.|..+.. +..++=..+..+.+-+. ......++.+- .- .+.. .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 36788999999999999977765 33333223333433332 23333333320 00 0110 001111
Q ss_pred HHHHHHHHHHHhcccc-EEEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 282 LNLLQEELNKQLSRKK-FLLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
........++.+...+ =++|||.+-.. ..-..+.+...+.....+..||+|=|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334455554544 49999998432 1223445555555555677999999975
No 476
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.56 E-value=0.27 Score=60.79 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=55.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.... ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45889998888888776432 368899999999999999998742 2334677788665 3346677777777
Q ss_pred HHhcC
Q 000568 270 RCITK 274 (1416)
Q Consensus 270 ~~l~~ 274 (1416)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76654
No 477
>PRK05922 type III secretion system ATPase; Validated
Probab=91.56 E-value=0.58 Score=54.63 Aligned_cols=85 Identities=11% Similarity=0.168 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCC-------CCCCCH-----H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQT-------IDDSDL-----N 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~-------~~~~~~-----~ 283 (1416)
...++|+|..|+|||||.+.+.... ..+..+++-+++. ..+.+.+.+......... .+.... .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998642 1233344334332 233444444433322211 111111 1
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1223345555 488999999999
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.54 E-value=0.53 Score=55.21 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
+-..++|.|..|+|||||++.+....... ..+++..-.+...+.++.+.+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999998643221 1233333333344555555554331111 01111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 478999999999
No 479
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.52 E-value=0.13 Score=53.07 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 480
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.52 E-value=1.3 Score=47.64 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|.|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.48 E-value=0.15 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 482
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.47 E-value=0.21 Score=55.37 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
+..+++.|+|.+|+|||++|.++... ...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 45689999999999999999999873 4445788999988775
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.41 E-value=0.58 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 484
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.40 E-value=0.19 Score=63.99 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++.|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 479999999999999999998753
No 485
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.38 E-value=0.26 Score=50.95 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
.|+|.|-||+||||+|..+......++.|+ +.-|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 689999999999999988554322222232 444555555543
No 486
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=2.8 Score=50.48 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=90.3
Q ss_pred eeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|..+.++.+.+.+.-+.. .+-....-|.++|++|.|||-||-+++.... .-+++|-.+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 455666666666666543211 0112234578999999999999999987432 234666543 2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hhhHhhhcccccc--CCCCcEEE
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YNDWVDMSRPLEA--GAPGSKII 330 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~~l~~--~~~gs~ii 330 (1416)
++.. .++. +.+.+.+.+.+.-.-|++.+.+|..++.. ....+.+...+.. +-.|.-|+
T Consensus 737 lL~K---yIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSK---YIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHH---Hhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 2221 2221 22333344444445789999999986521 1123334333322 33566666
Q ss_pred E-EccchHHHHh-hCCC---CeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 331 V-TTRNQEVVAI-MGTA---PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 331 v-TtR~~~v~~~-~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
. |||-.-+... ++.. +.+.=+.-++.+-.++|...+-.- ......++ +.++.+.+|.--
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~vdl----~~~a~~T~g~tg 871 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDVDL----ECLAQKTDGFTG 871 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCccccch----HHHhhhcCCCch
Confidence 5 5554322222 1222 223334445556667776554211 11112223 336677776543
No 487
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.36 E-value=1.5 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 488
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.21 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+..||...|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 489
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.27 E-value=1.1 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 490
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.22 E-value=0.33 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
No 491
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.21 E-value=1.4 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 492
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.21 E-value=2.6 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999864
No 493
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.64 Score=48.33 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++=|=.++++++.+...-.-.. +-+..+-|..+|++|.|||-+|++|++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 3445566677776654322110 123456788999999999999999998
No 494
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.15 E-value=0.79 Score=53.56 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+..... -+..+...+.+.. .+.++.......=... ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999998886322 1334444454433 2334444433321110 11111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1222344444 588999999999
No 495
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.15 E-value=0.31 Score=54.62 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+++.+.|.||+||||+|.+.+- ........+.-|+.....+...++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47999999999999999988654 2333334466676666666555544
No 496
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.15 E-value=0.14 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.13 E-value=0.16 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999873
No 498
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.13 E-value=0.44 Score=54.84 Aligned_cols=63 Identities=22% Similarity=0.113 Sum_probs=45.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.++|+++....+...+... +-+.+.|.+|+|||+||+.++... . -..++|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcC
Confidence 4889888888877777654 357899999999999999999743 2 2345566666655555443
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.11 E-value=0.78 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998753
No 500
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.08 E-value=1.8 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
Done!