Query 000568
Match_columns 1416
No_of_seqs 536 out of 5401
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 15:56:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000568.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_342-346//hhsearch_pdb/000568hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 411.5 22.8 316 193-531 131-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 397.6 27.3 650 600-1399 72-766 (768)
3 3rgz_A Protein brassinosteroid 1.0 1 1 365.3 26.5 555 600-1292 95-714 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 362.3 27.7 314 185-530 119-453 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 336.1 33.3 231 1131-1376 381-621 (680)
6 1vt4_I APAF-1 related killer D 1.0 1 1 335.4 20.9 286 191-523 129-437 (1221)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 309.8 38.9 571 605-1355 25-623 (680)
8 1z6t_A APAF-1, apoptotic prote 1.0 1 1 308.8 32.1 305 189-527 123-450 (591)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 307.0 34.5 463 606-1292 34-510 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 300.8 32.7 76 605-681 32-109 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=411.48 Aligned_cols=316 Identities=17% Similarity=0.243 Sum_probs=261.2
Q ss_pred EEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCEEEEEECCCC--CHHHHHHHH
Q ss_conf 20046799999998328888999938999986898809999999980--42231456827999956875--889999999
Q 000568 193 YGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN--DHRVQDHFDLKAWTCVSNDF--DVIRLTKTI 268 (1416)
Q Consensus 193 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 268 (1416)
|||+.++++|.++|... .+...++++|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 78417999999987251---578962899986999988999999998406987466995799997898787999999999
Q ss_pred HHHHCCCCC-------CCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 997028778-------9787889999999985266-47899635335481338641144445999948999814367887
Q 000568 269 LRCITKQTI-------DDSDLNLLQEELNKQLSRK-KFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 269 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
+.+++.... +..+.+.+...+++.|.++ |||||+||||+.+...|.. ..||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCCHHHHH
T ss_conf 9998537553455553314699999999999768984899997999714415432--------69988999749779999
Q ss_pred HHCC-CCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 6189-880638999903189999982159999999734999999999843998588999998750498924188887201
Q 000568 341 IMGT-APAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419 (1416)
Q Consensus 341 ~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~ 419 (1416)
.++. ...+++++|+.+++|+||.+++++.. .++++++++++|+++|+|+||||+++|+.++.+ . ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHHHHH
T ss_conf 7088973898999898999999998744899---855689999999999599839999999984434-4-8999875787
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCHHHHHH
Q ss_conf 3589988567225899977279966898986-----------73157989623978999999980--9888875024799
Q 000568 420 IWDLPEDRCGILPALRVSYYYLSPPLKQCFA-----------YCSLLPKDYEFEEEEIILLWIAE--GFLDHEDRDEEKE 486 (1416)
Q Consensus 420 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~ 486 (1416)
.+... ...+..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred HHCCC--HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHH
T ss_conf 61364--77789897516202267999997526522336743235608997666----5331101355002677899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCCEEEHHHHHHHHHHHCCCCEE
Q ss_conf 999999999984886400169-988057239999999996047449
Q 000568 487 ELGHQFFQELCSRSFFEKSSN-DTSKFVMHDLVNDLARWAAGEIYF 531 (1416)
Q Consensus 487 ~~~~~~~~~L~~~~l~~~~~~-~~~~~~mhdli~~~~~~~~~~~~~ 531 (1416)
++++ ||++|+++||++.... ....|+|||+||+||+.++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999-99999875883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=397.56 Aligned_cols=650 Identities=17% Similarity=0.109 Sum_probs=315.6
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHH--HHCCCCCCCEEECCCCCCCCCCCCCC-CCCC
Q ss_conf 47875531144046787643470100557653884389984312207--42044667645247963441256776-5556
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCA--DIGNLIKLHHLKNSNTISLQEMPLRF-GKLT 676 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~ 676 (1416)
.+..|+.|++++++.+.+..+|+.|+++.+|++|++++|.....+|. .++++++|++|++++|.....+|..+ .+++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 57316802246786888678703324578899898989857870789678727889998989688267747977856388
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 77456935976788765112223433572768605778677112287640899999639998448988999922378651
Q 000568 677 CLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVL 756 (1416)
Q Consensus 677 ~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 756 (1416)
+|++| .+.-..+.. ........+.++++|+.|+++.+. ..+.
T Consensus 152 ~L~~L------------------------~Ls~n~l~~---~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~--------- 193 (768)
T 3rgz_A 152 SLEVL------------------------DLSANSISG---ANVVGWVLSDGCGELKHLAISGNK--ISGD--------- 193 (768)
T ss_dssp TCSEE------------------------ECCSSCCEE---ETHHHHHHTTCCTTCCEEECCSSE--EESC---------
T ss_pred CCCEE------------------------ECCCCCCCC---CCCHHHHHHCCCCCCCEEECCCCC--CCCC---------
T ss_conf 99989------------------------897983588---587155664358988989897880--3465---------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCEECCCCCCCCC
Q ss_conf 0289977944699933189999957689889970299996158999899-878868866368507898178174234799
Q 000568 757 DMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRGMSGVKRLSLEFYGND 835 (1416)
Q Consensus 757 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 835 (1416)
.....+++|+.|.+.++.....+..+. .+++|+.|++++|.+.+.+| .++.+++|+.|+++++.....++.
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------ 265 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------ 265 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC------
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC------
T ss_conf 784547868989892882788771112--699999897948858781657774488889898988866571672------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCC---CCCCCCEEEEECCCCC-CC--C
Q ss_conf 998998865786248744333333677655568-885109955488473267899---9998658999014682-12--1
Q 000568 836 SPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEG-FPKLRELHISRCSKLRGTLPE---RLPALEMFVIQSCEEL-VV--S 908 (1416)
Q Consensus 836 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l-~~--~ 908 (1416)
..+++|+.|.+.++.... .++..+.. +++|+.|++++| .+.+.+|. .+++|+.|.+.++... .. .
T Consensus 266 --~~l~~L~~L~L~~n~l~~-----~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 266 --LPLKSLQYLSLAENKFTG-----EIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp --CCCTTCCEEECCSSEEEE-----SCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred --CCCCCCCEEECCCCCCCC-----CCCHHHHHHCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf --436878989791785577-----258888844686889989689-677842367755877667789788525737978
Q ss_pred -CCCCCCCEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf -5789831099981788730203455565258771899853232677898976520246754798412889864541026
Q 000568 909 -VMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLL 987 (1416)
Q Consensus 909 -~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 987 (1416)
+..++ +|++|++++|.+...+|..+.
T Consensus 338 ~l~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~p~~l~ 364 (768)
T 3rgz_A 338 TLLKMR-----------------------------------------------------GLKVLDLSFNEFSGELPESLT 364 (768)
T ss_dssp HHTTCT-----------------------------------------------------TCCEEECCSSEEEECCCTTHH
T ss_pred HHHCCC-----------------------------------------------------CCCEEECCCCCCCCCCCHHHH
T ss_conf 872488-----------------------------------------------------887884847843762309898
Q ss_pred CCC-CCCEEEECCCCCCCCCCC-CCC--CCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 788-766488714898211378-889--8886588670698888682323217988867057726799631258888897
Q 000568 988 NLS-SLREIYIRSCSSLVSFPE-VAL--PSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPS 1063 (1416)
Q Consensus 988 ~l~-~L~~L~L~~~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 1063 (1416)
.++ +|+.|++++|.....++. +.. +++|+.|++++|...+.+|..+ ..+++|+.|++++|.....++ ..
T Consensus 365 ~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p-----~~ 437 (768)
T 3rgz_A 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIP-----SS 437 (768)
T ss_dssp HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCC-----GG
T ss_pred HHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCC-----HH
T ss_conf 63227719986278747876766653324776189897784654248777--568987989895884668546-----77
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 766866147786444433464466786554456545784379995422-2369986100001258989995189980698
Q 000568 1064 LKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWECP 1142 (1416)
Q Consensus 1064 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l-~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~ 1142 (1416)
+..+++|+.+.+..+....... -.+..+++|+.+ +..+.+.+.++. .+..++ +|+.|++++|.
T Consensus 438 -----l~~l~~L~~L~L~~n~l~~~~p---------~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~-~L~~L~L~~N~ 501 (768)
T 3rgz_A 438 -----LGSLSKLRDLKLWLNMLEGEIP---------QELMYVKTLETLILDFNDLTGEIPS-GLSNCT-NLNWISLSNNR 501 (768)
T ss_dssp -----GGGCTTCCEEECCSSCCCSCCC---------GGGGGCTTCCEEECCSSCCCSCCCG-GGGGCT-TCCEEECCSSC
T ss_pred -----HHCCCCCCEEECCCCCCCCCCC---------HHHCCCCCCEEEEECCCCCCCCCCH-HHHCCC-CCCEEECCCCC
T ss_conf -----7449988989897881547189---------7882877732999019951375887-881699-89989753995
Q ss_pred CHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE---------ECCC
Q ss_conf 4226687412588521896225778533466455788766065024898643668998999935698---------7366
Q 000568 1143 KLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLE---------ISEC 1213 (1416)
Q Consensus 1143 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~---------l~~~ 1213 (1416)
+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|........+..+. +.++
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 18968768856899998989789433748877708898998989888468827957860421223201345421111344
Q ss_pred C-------------CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-------------877675235676755615550678999998777999997651473578998410003679999898
Q 000568 1214 E-------------RLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNR 1280 (1416)
Q Consensus 1214 ~-------------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 1280 (1416)
. .....+..+..++.+..+++..+.+.+..+..+..+ .+|+.|++++|.....++.. +..
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~------l~~ 654 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKE------IGS 654 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS-BCCCEEECCSSCCBSCCCGG------GGG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCC-CCCCEEECCCCCCCCCCCHH------HHC
T ss_conf 43222233222100135563232002321100113310046274334033-56657978588015558778------841
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 887230799326886200497633457878676788753610014565673-4553754568858088247899887898
Q 000568 1281 FSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLE-RLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1281 l~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 1359 (1416)
++.|+.|++++|. ....+|... ..+++|+.|+++++ ++. .+|..+..+++|+.|++++|+--..+|.
T Consensus 655 l~~L~~L~Ls~N~-l~g~ip~~l----------~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 655 MPYLFILNLGHND-ISGSIPDEV----------GDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CTTCCEEECCSSC-CCSCCCGGG----------GGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECCCCC-CCCCCCHHH----------HCCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 4157878486880-388789678----------47778998989788-02386886775788789787968815560899
Q ss_pred CCCCCCCCEEEECCCHH-----HHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 88754445010038803-----69964117985454337646599
Q 000568 1360 KGLPASLLRLEISGCPL-----IEERYIKDGGQYRHLLTYIPCII 1399 (1416)
Q Consensus 1360 ~~~~~~L~~L~i~~c~~-----l~~~~~~~~~~~~~~~~~~~~~~ 1399 (1416)
.+.+.++....+.+||. +. .|....+++|++++|++.+.
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--------------
T ss_pred CHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCCCCCCCCCCCCCCC
T ss_conf 601024897775698321088776-78887668889888765667
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=365.33 Aligned_cols=555 Identities=17% Similarity=0.137 Sum_probs=289.5
Q ss_pred CCCCCCCCCEEECCCCCCC-CCCC--CCCCCCCCCEEECCCCCCHHHCHHHH-CCCCCCCEEECCCCCCCCCC-CCC---
Q ss_conf 4787553114404678764-3470--10055765388438998431220742-04466764524796344125-677---
Q 000568 600 KLQQLRVFTVLNLSRTNIR-NLPE--SITKLYNLHTLLLEDCDRLKTLCADI-GNLIKLHHLKNSNTISLQEM-PLR--- 671 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~-~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~l-p~~--- 671 (1416)
.+..++.|++|+|++|.+. .+|. .++++.+|++|++++|......|..+ .++++|++|++++|. +... |..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 173 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVL 173 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHH
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHHH
T ss_conf 32457889989898985787078967872788999898968826774797785638899989897983-58858715566
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCHH
Q ss_conf 65556774569359767887651122234335727686057786771122876408999996399984489889999223
Q 000568 672 FGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPET 751 (1416)
Q Consensus 672 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 751 (1416)
++++++|++|... -..+.... .+..+++|+.|+++.+.. ...
T Consensus 174 ~~~l~~L~~L~Ls------------------------~n~l~~~~--------~~~~l~~L~~L~Ls~n~l--~~~---- 215 (768)
T 3rgz_A 174 SDGCGELKHLAIS------------------------GNKISGDV--------DVSRCVNLEFLDVSSNNF--STG---- 215 (768)
T ss_dssp TTCCTTCCEEECC------------------------SSEEESCC--------BCTTCTTCCEEECCSSCC--CSC----
T ss_pred HCCCCCCCEEECC------------------------CCCCCCCC--------CCCCCCCCCEEECCCCCC--CCC----
T ss_conf 4358988989897------------------------88034657--------845478689898928827--887----
Q ss_pred HHHHHCCCCCCCCCCEEEEEEECCC-CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCC
Q ss_conf 7865102899779446999331899-999576898899702999961589998998788688663685078981781742
Q 000568 752 ETRVLDMLKPHQNLEEFCINGYRGT-KFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLE 830 (1416)
Q Consensus 752 ~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~ 830 (1416)
...+..+++|+.|.+.++... .+|.++. .+++|+.|++++|.+.+.+|.. .+++|+.|+++++.....++..
T Consensus 216 ----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 216 ----IPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp ----CCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCC
T ss_pred ----CCCCCCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHH
T ss_conf ----71112699999897948858781657774--4888898989888665716724-3687898979178557725888
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC----CCCCCCCEEEEECCCCCC
Q ss_conf 3479999899886578624874433333367765556888510995548847326789----999986589990146821
Q 000568 831 FYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP----ERLPALEMFVIQSCEELV 906 (1416)
Q Consensus 831 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p----~~l~~L~~L~l~~~~~l~ 906 (1416)
+.+ .+++|+.|.+.++... ...+..+..+++|+.|++++| .+.+.+| ..+++|+.|.+.++....
T Consensus 289 ~~~-----~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 289 LSG-----ACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SCT-----TCTTCSEEECCSSEEE-----ECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred HHH-----HCCCCCEEECCCCCCC-----CCCCHHHHCCCCCCEEECCCC-CCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 884-----4686889989689677-----842367755877667789788-52573797887248888788484784376
Q ss_pred ---CCCCCCC-CCEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf ---2157898-310999817887302034555652587718998532326778989765202467547984128898645
Q 000568 907 ---VSVMSLP-ALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTL 982 (1416)
Q Consensus 907 ---~~~~~~~-~L~~L~i~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 982 (1416)
..+..++ .|+.+.+.+|...... .+.+. ...+++|+.|++++|.+...+
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~--------------~~~~~-------------~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPI--------------LPNLC-------------QNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEEC--------------CTTTT-------------CSTTCCCCEEECCSSEEEEEC
T ss_pred CCCHHHHHHHCCCCEEECCCCCCCCCC--------------CHHHH-------------HCCCCCCCEEECCCCCCCCCC
T ss_conf 230989863227719986278747876--------------76665-------------332477618989778465424
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 4102678876648871489821137-888988865886706988886823232179888670577267996312588888
Q 000568 983 PQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLP 1061 (1416)
Q Consensus 983 ~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 1061 (1416)
|..+..+++|+.|++++|.....+| .+..+++|+.|++++|...+.+|..+ ..+++|+.|++++|.....++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----- 483 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIP----- 483 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCC-----
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCCCC-----
T ss_conf 8777568987989895884668546777449988989897881547189788--287773299901995137588-----
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 97766866147786444433464466786554456545784379995422-23699861000012589899951899806
Q 000568 1062 PSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWE 1140 (1416)
Q Consensus 1062 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l-~~~~~~~~~~~~~~~~~l~~~L~~L~l~~ 1140 (1416)
.. +.++++|+.+ +..|.+.+.+|. .++.++ +|+.|++++
T Consensus 484 ~~--------------------------------------l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~-~L~~L~L~~ 523 (768)
T 3rgz_A 484 SG--------------------------------------LSNCTNLNWISLSNNRLTGEIPK-WIGRLE-NLAILKLSN 523 (768)
T ss_dssp GG--------------------------------------GGGCTTCCEEECCSSCCCSCCCG-GGGGCT-TCCEEECCS
T ss_pred HH--------------------------------------HHCCCCCCEEECCCCCCCCCCCH-HHHCCC-CCCEEECCC
T ss_conf 78--------------------------------------81699899897539951896876-885689-999898978
Q ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC------------------------------
Q ss_conf 98422668741258852189622577853346645578876606502489------------------------------
Q 000568 1141 CPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCG------------------------------ 1190 (1416)
Q Consensus 1141 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~------------------------------ 1190 (1416)
|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.....+..+.+..+.
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 94337488777088989989898884688279578604212232013454211113444322223322210013556323
Q ss_pred ----------------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------8643668998999935698736668776752356767556155506789999987779999976
Q 000568 1191 ----------------NLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNL 1254 (1416)
Q Consensus 1191 ----------------~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L 1254 (1416)
....+|.....+++|+.|++++|.+...+|..+..+++|+.|++++|.+.+..|..+..++ +|
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L 682 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GL 682 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TC
T ss_pred HHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC-CC
T ss_conf 20023211001133100462743340335665797858801555877884141578784868803887896784777-89
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 51473578998410003679999898887230799326
Q 000568 1255 HSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~ 1292 (1416)
+.|++++|.....+|+. +..+++|+.|++++|
T Consensus 683 ~~LdLs~N~l~g~ip~~------l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQA------MSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCEECCCGG------GGGCCCCSEEECCSS
T ss_pred CEEECCCCCCCCCCCHH------HHCCCCCCEEECCCC
T ss_conf 98989788023868867------757887897879688
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=362.25 Aligned_cols=314 Identities=22% Similarity=0.312 Sum_probs=247.2
Q ss_pred CCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CCEEEEEECCCCC--
Q ss_conf 56667703200467999999983288889999389999868988099999999804223-1456-8279999568758--
Q 000568 185 SLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHF-DLKAWTCVSNDFD-- 260 (1416)
Q Consensus 185 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~-- 260 (1416)
.+.+.+.||||++++++|.++|... +++.++++|+||||+||||||++++++.+. ..+| +.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 7999864125799999999998613----588777999918988888999998607567886278817999978857267
Q ss_pred HHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 8999999999702877----89787889999999985266--47899635335481338641144445999948999814
Q 000568 261 VIRLTKTILRCITKQT----IDDSDLNLLQEELNKQLSRK--KFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 261 ~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
....+..++..+.... ....+.+.+...++..+.++ |+||||||||+. ..|..+ .+||+||+|||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECC
T ss_conf 999999999986553033347887778999999999735678789999567997--788763-------68978999927
Q ss_pred CHHHHHH-HCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 3678876-18988063899-990318999998215999999973499999999984399858899999875049892418
Q 000568 335 NQEVVAI-MGTAPAYQLKR-LSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDW 412 (1416)
Q Consensus 335 ~~~v~~~-~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w 412 (1416)
++.++.. .+....+.+++ |+++++++||...++... +..++.+++|+++|+|+||||+++|+.|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHH
T ss_conf 78998763488437982588887889999998657981-----34838899999984997799999999862480--579
Q ss_pred HHHHHHCCCCCC--------CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 888720135899--------885672258999772799668989867315798962397899999998098888750247
Q 000568 413 EDVLNSNIWDLP--------EDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEE 484 (1416)
Q Consensus 413 ~~~~~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 484 (1416)
...++....... .....+..++.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------
T ss_conf 999999865044303465564467799999989986799999999972813799751899999885898-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCCCEEEHHHHHHHHHHHCCCCE
Q ss_conf 99999999999984886400169-98805723999999999604744
Q 000568 485 KEELGHQFFQELCSRSFFEKSSN-DTSKFVMHDLVNDLARWAAGEIY 530 (1416)
Q Consensus 485 ~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~mhdli~~~~~~~~~~~~ 530 (1416)
++.++.++++|++++|++.... ....|+||+++|+|++..+.++.
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred -HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf -8899999999974463389637981189966899999874506789
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=336.13 Aligned_cols=231 Identities=18% Similarity=0.131 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 995189980698422668741258852189622577853346-6455788766065024898643668998999935698
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILP-SGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLE 1209 (1416)
Q Consensus 1131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~ 1209 (1416)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|......+.....+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCH
T ss_conf 86766889999777677544207788888867787575435755325754612784489975422764550075431011
Q ss_pred ECCCCCC--CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf 7366687--767523567675561555067899999877799999765147357899841000367---99998988872
Q 000568 1210 ISECERL--EALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQ---GGGGLNRFSSL 1284 (1416)
Q Consensus 1210 l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~l~~L 1284 (1416)
+++|.+. ...|..+..+++|+.|++++|.+..+.+..+..++ +|+.|++++|... .++.... ....+..+++|
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLA-RLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCG-GGGSTTSTTSCCCTTTTCTTC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCC-CCCEEECCCCCCC-CCCHHHCCCCCCHHHCCCCCC
T ss_conf 01464422566776455578789998999987767944634553-4688858899730-000000467741423379988
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC--
Q ss_conf 307993268862004976334578786767887536100145656734553754-56885808824789988789888--
Q 000568 1285 QQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIF-YHQNLTKLKLCNCPKLKYFPEKG-- 1361 (1416)
Q Consensus 1285 ~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~-- 1361 (1416)
+.|++++|.. ..+|.+.+ ..+++|+.|++++ +.++.++...+ .+++|+.|++++|. ++.++...
T Consensus 539 ~~L~L~~N~l--~~i~~~~~---------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 605 (680)
T 1ziw_A 539 HILNLESNGF--DEIPVEVF---------KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFG 605 (680)
T ss_dssp CEEECCSSCC--CCCCTTTT---------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC-CCBCCHHHHH
T ss_pred CEEECCCCCC--CCCCHHHC---------CCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHHC
T ss_conf 8888999978--87797773---------4666752238999-97776797683789888889899996-8705966830
Q ss_pred -CCCCCCEEEECCCHH
Q ss_conf -754445010038803
Q 000568 1362 -LPASLLRLEISGCPL 1376 (1416)
Q Consensus 1362 -~~~~L~~L~i~~c~~ 1376 (1416)
..++|+.+++++||.
T Consensus 606 ~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPF 621 (680)
T ss_dssp HHHTTCSEEECTTCCC
T ss_pred CCCCCCCEEECCCCCC
T ss_conf 1146657798318970
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=335.35 Aligned_cols=286 Identities=20% Similarity=0.246 Sum_probs=226.3
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-EEEEEECCCCCHHHHHHHHH
Q ss_conf 03200467999999983288889999389999868988099999999804223145682-79999568758899999999
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDL-KAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 269 (1416)
..|||++++++|.++|...+ ..++++|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77892899999999974358-----9718999769996679999999971498874899389998289999999999999
Q ss_pred HHHCCCC---C---C-----CCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 9702877---8---9-----787889999999985---266478996353354813386411444459999489998143
Q 000568 270 RCITKQT---I---D-----DSDLNLLQEELNKQL---SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN 335 (1416)
Q Consensus 270 ~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~ 335 (1416)
..+.... . + ..+.+.+...+++.+ .++|+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECCC
T ss_conf 99862272102200134679999999999999999850478879987186818--999864----7---98299994437
Q ss_pred HHHHHHHCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-C
Q ss_conf 6788761898806389------99903189999982159999999734999999999843998588999998750498-9
Q 000568 336 QEVVAIMGTAPAYQLK------RLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKH-G 408 (1416)
Q Consensus 336 ~~v~~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 408 (1416)
+.++..+.....+.++ +|+++|+|+||.+.. +.. . .+... +.|+|+||||+++|+.|+.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~---eICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPR---EVLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHH---HHCCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----H---HHHHH---HHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 3799866897089946865568969999999999974-998----8---99999---99698999999999998488997
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 2418888720135899885672258999772799668-989867315798962397899999998098888750247999
Q 000568 409 PSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPL-KQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEE 487 (1416)
Q Consensus 409 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 487 (1416)
.+.|... ....+..++.+||+.||++. |+||++||+||+++.|+.+.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHHCC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HH
T ss_conf 9998669----------86189999999998488999999999971779999877999998766778-----------89
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHH
Q ss_conf 999999999848864001699880572399999999
Q 000568 488 LGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLAR 523 (1416)
Q Consensus 488 ~~~~~~~~L~~~~l~~~~~~~~~~~~mhdli~~~~~ 523 (1416)
.++.++++|+++||++.. +....|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEE-CCCCEEEEHHHHHHHHC
T ss_conf 999999999961988986-89998986099999856
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=309.78 Aligned_cols=571 Identities=18% Similarity=0.126 Sum_probs=285.4
Q ss_pred CCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 531144046787643470-1005576538843899843122074204466764524796344125677-65556774569
Q 000568 605 RVFTVLNLSRTNIRNLPE-SITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLR-FGKLTCLQTLC 682 (1416)
Q Consensus 605 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 682 (1416)
+.+++|++++|.++.+|. .|.++.+|++|++++|......|..+.++++|++|++++|. +..+|.+ |+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L- 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTEL- 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE-
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEE-
T ss_conf 887688898997787597887178767588788996485697787406676888899985-675685453038888989-
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 35976788765112223433572768605778677112287640899999639998448988999922378651028997
Q 000568 683 NFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPH 762 (1416)
Q Consensus 683 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 762 (1416)
.+.-..+.. .....+.++++|+.|+++.+. .... ....+..+
T Consensus 103 -----------------------~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~--l~~~-------~~~~~~~l 144 (680)
T 1ziw_A 103 -----------------------HLMSNSIQK------IKNNPFVKQKNLITLDLSHNG--LSST-------KLGTQVQL 144 (680)
T ss_dssp -----------------------ECCSSCCCC------CCSCTTTTCTTCCEEECCSSC--CSCC-------CCCSSSCC
T ss_pred -----------------------ECCCCCCCC------CCHHHCCCCCCCCEEECCCCC--CCCC-------CCHHHCCC
T ss_conf -----------------------898996685------396674156788889898995--2466-------72111245
Q ss_pred CCCCEEEEEEECCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCC
Q ss_conf 7944699933189999957-689889970299996158999899-87886886636850789817817423479999899
Q 000568 763 QNLEEFCINGYRGTKFPIW-LGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPF 840 (1416)
Q Consensus 763 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f 840 (1416)
++|+.|.+.++....++.. +....+++|+.|++++|.+....+ .+..+++|+.|.+.++........
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----------- 213 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE----------- 213 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH-----------
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH-----------
T ss_conf 567779745884365297886244666321798889825655815553223445543056646805677-----------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 88657862487443333336776555688851099554884732678999998658999014682121578983109998
Q 000568 841 PCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKI 920 (1416)
Q Consensus 841 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~i 920 (1416)
.... .-..++|+.|++++| .+.+..|..+..+. .+.|+.+.+
T Consensus 214 ----------------~~~~-----~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~----------------~~~L~~L~L 255 (680)
T 1ziw_A 214 ----------------KLCL-----ELANTSIRNLSLSNS-QLSTTSNTTFLGLK----------------WTNLTMLDL 255 (680)
T ss_dssp ----------------HHHH-----HHTTSCCCEEECTTS-CCCEECTTTTGGGG----------------GSCCCEEEC
T ss_pred ----------------HHHH-----HHHHCCCCEEECCCC-CCCCCCHHHHHCCC----------------CCCCCEEEC
T ss_conf ----------------7877-----753151008874577-43646866751467----------------677888778
Q ss_pred CCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 17887302034555652587718998532326778989765202467547984128898645410267887664887148
Q 000568 921 DGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSC 1000 (1416)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 1000 (1416)
.+|....... . .+ ..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 256 s~n~l~~~~~-----------~---~~---------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 256 SYNNLNVVGN-----------D---SF---------------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTSCCCEECT-----------T---TT---------------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCCCCCC-----------C---CC---------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCH
T ss_conf 7887675680-----------2---11---------------67410568557788567658656267888557736331
Q ss_pred CCCC-----CCC-----CCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCCEEEE
Q ss_conf 9821-----137-----88898886588670698888682323217988867057726799-631258888897766866
Q 000568 1001 SSLV-----SFP-----EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSS-LTYITGVQLPPSLKLLLI 1069 (1416)
Q Consensus 1001 ~~~~-----~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~L~~L~l 1069 (1416)
.... .+| .+..+++|++|++++|.+....+..+ ..+++|+.|++++|.. +..++...+.
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~-------- 376 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFV-------- 376 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTG--------
T ss_pred HHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHH--CCCCCCCEEECCCCCHHHHHCCHHHHC--------
T ss_conf 3213333355454386562467778888798982687885574--065687289887980144323532202--------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCHHHHH-
Q ss_conf 1477864444334644667865544565457843799954222369986100001258989995189980698422668-
Q 000568 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIA- 1148 (1416)
Q Consensus 1070 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~- 1148 (1416)
.. ..+.|+.+..+++....+....+..++ +|+.|++++|.+...++
T Consensus 377 ---------------------~~-----------~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 377 ---------------------SL-----------AHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp ---------------------GG-----------TTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCS
T ss_pred ---------------------CC-----------CCCCCCEEECCCCCCCEECHHHHHCCC-CCCEEECCCCCCCCCCCC
T ss_conf ---------------------45-----------568676688999977767754420778-888886778757543575
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 74125885218962257785334664557887660650248986--4366899899993569873666877675235676
Q 000568 1149 ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNL--VSFSEGGLPCAKLTRLEISECERLEALPRGLRNL 1226 (1416)
Q Consensus 1149 ~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 1226 (1416)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|... ..+|.....+++|+.|++++|.+....+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 53257546127844899754227645500754310110146442256677645557878999899998776794463455
Q ss_pred CCCCEEEEECCCCCCCCCC--------CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 7556155506789999987--------77999997651473578998410003679999898887230799326886200
Q 000568 1227 TCLQHLTIGDVLSPERDPE--------DEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVS 1298 (1416)
Q Consensus 1227 ~~L~~L~l~~n~~~~~~~~--------~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~ 1298 (1416)
++|++|++++|.+..+... .+..+ ++|+.|++++|.. ..++.. .+..+++|+.|++++|. +..
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~N~l-~~i~~~-----~~~~l~~L~~L~Ls~N~--l~~ 574 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGL-SHLHILNLESNGF-DEIPVE-----VFKDLFELKIIDLGLNN--LNT 574 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-TTCCEEECCSSCC-CCCCTT-----TTTTCTTCCEEECCSSC--CCC
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCHHHCCC-CCCCEEECCCCCC-CCCCHH-----HCCCCCCCCEEECCCCC--CCC
T ss_conf 34688858899730000000467741423379-9888888999978-877977-----73466675223899997--776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCC
Q ss_conf 4976334578786767887536100145656734553754--56885808824789988
Q 000568 1299 FPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIF--YHQNLTKLKLCNCPKLK 1355 (1416)
Q Consensus 1299 ~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~~~~l~ 1355 (1416)
+|...+ ..+++|+.|++++ +.++.++...+ .+++|+.|++++|+-.-
T Consensus 575 l~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 575 LPASVF---------NNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCTTTT---------TTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCHHHH---------CCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCCEEECCCCCCCC
T ss_conf 797683---------7898888898999-968705966830114665779831897025
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=308.79 Aligned_cols=305 Identities=24% Similarity=0.354 Sum_probs=231.8
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CCEEEEEECCCCCHHHHHH
Q ss_conf 7703200467999999983288889999389999868988099999999804223-1456-8279999568758899999
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHF-DLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~ 266 (1416)
.+.||||+.++++|.+++... .++.++++|+||||+||||||.+++++.+. ..+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCEECCCHHHHHHHHHHHHCC----CCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHH
T ss_conf 871405299999999998603----68884699976998988999999983556888528996599977877-6688999
Q ss_pred H---HHHHHCCC----CCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 9---99970287----78978788999999998526--647899635335481338641144445999948999814367
Q 000568 267 T---ILRCITKQ----TIDDSDLNLLQEELNKQLSR--KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 267 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
. +...++.. .....+.+.+...+...+.+ +++|||+||+|+. ..+.. + ..|++||+|||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH--HHHHH----H---CCCCEEEEECCCCH
T ss_conf 999999985035565567998899999999999706799869998589987--99987----6---37986999898817
Q ss_pred HHHHHCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 8876189880638---9999031899999821599999997349999999998439985889999987504989241888
Q 000568 338 VVAIMGTAPAYQL---KRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWED 414 (1416)
Q Consensus 338 v~~~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~ 414 (1416)
++..+. ...+++ ++|+.+|++++|...++... ....+.+.+|+++|+|+|||++++|+.++.. ...|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHH
T ss_conf 777348-98268615889998999999998718983-----1045999999999589837999999998448--435999
Q ss_pred HHHHCCCCC--------CCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 872013589--------988567225899977279966898986731579896239789999999809888875024799
Q 000568 415 VLNSNIWDL--------PEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKE 486 (1416)
Q Consensus 415 ~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 486 (1416)
.+....... ......+..++..||+.||++.|.||.+||+||+++.|+.+.+..+|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC------------H
T ss_conf 9999988689876511465437899999999986899999999974556799850899999996658------------8
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCCCEEEHHHHHHHHHHHCC
Q ss_conf 99999999998488640016-998805723999999999604
Q 000568 487 ELGHQFFQELCSRSFFEKSS-NDTSKFVMHDLVNDLARWAAG 527 (1416)
Q Consensus 487 ~~~~~~~~~L~~~~l~~~~~-~~~~~~~mhdli~~~~~~~~~ 527 (1416)
+.+..++++|++++|++... +....|+||+++|++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 999999999985958688548985679976899999986535
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=307.00 Aligned_cols=463 Identities=15% Similarity=0.106 Sum_probs=227.0
Q ss_pred CCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 311440467876434-701005576538843899843122074204466764524796344125-677655567745693
Q 000568 606 VFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEM-PLRFGKLTCLQTLCN 683 (1416)
Q Consensus 606 ~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~~ 683 (1416)
.+++|++++|.|+.+ |..|.++.+|++|++++|......|..|.++++|++|++++|. +..+ |..++.+++|++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L-- 110 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL-- 110 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE--
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEE--
T ss_conf 67589815873471796672567665289788983552485113684336764488985-654586552344215376--
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 59767887651122234335727686057786771122876408999996399984489889999223786510289977
Q 000568 684 FVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQ 763 (1416)
Q Consensus 684 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 763 (1416)
.+.-..+... ... .+..++
T Consensus 111 ----------------------~L~~n~i~~l------~~~---------------------------------~~~~l~ 129 (606)
T 3t6q_A 111 ----------------------FFIQTGISSI------DFI---------------------------------PLHNQK 129 (606)
T ss_dssp ----------------------ECTTSCCSCG------GGS---------------------------------CCTTCT
T ss_pred ----------------------ECCCCCCCCC------CCC---------------------------------HHCCCC
T ss_conf ----------------------5212676657------810---------------------------------122378
Q ss_pred CCCEEEEEEECCCCC--CCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCC--EEEECCCCCCEECCCCCCCCCCCC
Q ss_conf 944699933189999--957689889970299996158999899-878868866--368507898178174234799998
Q 000568 764 NLEEFCINGYRGTKF--PIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLK--HLEVRGMSGVKRLSLEFYGNDSPI 838 (1416)
Q Consensus 764 ~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~~~ 838 (1416)
+|+.|.+.++....+ |.+. .+++|+.|++++|.+....+ .++.+++|+ .|+++++.. ..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l-~~~~~~-------- 197 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPG-------- 197 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC-CEECTT--------
T ss_pred CCCEEECCCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC-CCCCHH--------
T ss_conf 223898879834114765456---87656877765684455496563322156403896679814-754866--------
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 99886578624874433333367765556888510995548847326789999986589990146821215789831099
Q 000568 839 PFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKF 918 (1416)
Q Consensus 839 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 918 (1416)
......|+.+++.+|..+. ..+..+..+.. ..+
T Consensus 198 ---------------------------~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l-------------------~~l 230 (606)
T 3t6q_A 198 ---------------------------AFDSAVFQSLNFGGTQNLL-VIFKGLKNSTI-------------------QSL 230 (606)
T ss_dssp ---------------------------TTTTCEEEEEECTTCSCHH-HHHHHTTTCEE-------------------EEE
T ss_pred ---------------------------HHHHCCCCCCCCCCCHHHH-HHHHHCCCCCH-------------------HHE
T ss_conf ---------------------------7300100135567726677-77651335644-------------------220
Q ss_pred EECCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 98178873020345556525877189985323267789897652024675479841288986454102678876648871
Q 000568 919 KIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIR 998 (1416)
Q Consensus 919 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 998 (1416)
.+..+.. +....+..... ..+ ...+|+.|++++|.+....+..+..+++|++|+++
T Consensus 231 ~~~~~~~---------------------~~~~~i~~~~~-~~l--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 231 WLGTFED---------------------MDDEDISPAVF-EGL--CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp ECCCCTT---------------------SCCCCCCGGGG-GGG--GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred ECHHHCC---------------------CCCCCCCHHHH-CHH--HCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 0201102---------------------64122686674-303--20750599944576585577774456678889562
Q ss_pred CCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 489821137-8889888658867069888868232321798886705772679963125888889776686614778644
Q 000568 999 SCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRT 1077 (1416)
Q Consensus 999 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~ 1077 (1416)
+|... .+| .+..+++|++|++++|.+....|..+ ..+++|+.|++++|.....++..
T Consensus 287 ~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~------------------- 344 (606)
T 3t6q_A 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELGTG------------------- 344 (606)
T ss_dssp TSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCCSS-------------------
T ss_pred CCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCCHH-------------------
T ss_conf 88267-778214165468889771687686760233--01576898889899744434624-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCHHHH--HHHHCCCC
Q ss_conf 4433464466786554456545784379995422236998610000125898999518998069842266--87412588
Q 000568 1078 LTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESI--AERLNNNT 1155 (1416)
Q Consensus 1078 l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--~~~~~~l~ 1155 (1416)
.+..+ ++|++|++++|.+.... +..+..++
T Consensus 345 -----------------------------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 345 -----------------------------------------------CLENL-ENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp -----------------------------------------------TTTTC-TTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred -----------------------------------------------HHHCC-CCCCEEECCCCCCCCCCCCCHHCCCCC
T ss_conf -----------------------------------------------55066-758988788996664567522105678
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5218962257785334664557887660650248986436689-989999356987366687767523567675561555
Q 000568 1156 SLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEG-GLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTI 1234 (1416)
Q Consensus 1156 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 1234 (1416)
+|+.|++++|.+....+..+..+++|+.|++++|......+.. ...+++|+.|++++|.+....+..+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 88989898996775788873477457768788886777565212417655888989898557768778737887888989
Q ss_pred ECCCCCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 06789999---98777999997651473578998410003679999898887230799326
Q 000568 1235 GDVLSPER---DPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1235 ~~n~~~~~---~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~ 1292 (1416)
++|.+.+. .+..+..+ ++|+.|++++|......+. .+..+++|+.|++++|
T Consensus 457 ~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSSIDQH------AFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCEECTT------TTTTCTTCCEEECCSS
T ss_pred CCCCCCCCCCCCCHHHCCC-CCCCEEECCCCCCCCCCHH------HHCCCCCCCEEECCCC
T ss_conf 8998885434543124048-8766887999966706864------6326567888989898
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=300.75 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=46.0
Q ss_pred CCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 531144046787643470-1005576538843899843122074204466764524796344125-6776555677456
Q 000568 605 RVFTVLNLSRTNIRNLPE-SITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEM-PLRFGKLTCLQTL 681 (1416)
Q Consensus 605 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L 681 (1416)
+.+++|++++|.++.++. .|.++.+|++|++++|......|..|.++++|++|++++|. +..+ |..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEE
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC-CCCCCHHHCCCCCCCCEE
T ss_conf 876788788897577375455577667488688773664397773060106886787985-630485220786537888
Done!