BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000569
(1415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 131/182 (71%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FL+ + + NTPEEIA FL LNKT IGDYLGEREEL L V+H
Sbjct: 19 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 78
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+VD +F + +A+R FL FRLPGEAQKIDR+ME FA+RYC CNP VF S DT YV
Sbjct: 79 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 138
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKG 434
L+YSVI+LNTD HNP V++KM + F+ NRGI++G DLPEE LR+L++ I K+
Sbjct: 139 LSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPE 198
Query: 435 DD 436
DD
Sbjct: 199 DD 200
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/182 (58%), Positives = 131/182 (71%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FL+ + + NTPEEIA FL LNKT IGDYLGEREEL L V+H
Sbjct: 19 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 78
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+VD +F + +A+R FL FRLPG+AQKIDR+ME FA+RYC CNP VF S DT YV
Sbjct: 79 AFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 138
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKG 434
L+YSVI+LNTD HNP V++KM + F+ NRGI++G DLPEE LR+L++ I K+
Sbjct: 139 LSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPE 198
Query: 435 DD 436
DD
Sbjct: 199 DD 200
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 215 bits (548), Expect = 1e-55, Method: Composition-based stats.
Identities = 100/184 (54%), Positives = 137/184 (74%), Gaps = 2/184 (1%)
Query: 252 LQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLK 311
+++GI LFN+KPK+GI++L +G TPE+IA FL L+ T +G++LG+ ++ +
Sbjct: 22 IEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKE 81
Query: 312 VMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCN--PKVFTSA 369
VM+AYVD DF +F A+R+FL GFRLPGEAQKIDR+MEKFA RY +CN +F SA
Sbjct: 82 VMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASA 141
Query: 370 DTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNE 429
DTAYVLAYS+I+L TD H+P VKNKM+ + +I+ NRGI+D KDLPEEYL +++ I+ +
Sbjct: 142 DTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
Query: 430 IKMK 433
I MK
Sbjct: 202 ISMK 205
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/182 (58%), Positives = 130/182 (71%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FL+ + + NTPEEIA FL LNKT IGDYLGEREEL L V+H
Sbjct: 19 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 78
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+VD +F + +A+R FL FRLPGEAQKIDR+ME FA+RYC NP VF S DT YV
Sbjct: 79 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGVFQSTDTCYV 138
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKG 434
L+YSVI+LNTD HNP V++KM + F+ NRGI++G DLPEE LR+L++ I K+
Sbjct: 139 LSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPE 198
Query: 435 DD 436
DD
Sbjct: 199 DD 200
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 209 bits (532), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FL+ + + NTPEEIA FL LNKT IGDYLGEREEL L V+H
Sbjct: 17 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 76
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+VD +F + +A+R FL FRLPGEAQKIDR+ME FA+RYC CNP VF S DT YV
Sbjct: 77 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 136
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNE 429
L+++VI+LNT HNP V++K + F+ NRGI++G DLPEE LR+L++ I RNE
Sbjct: 137 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSI-RNE 190
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 202 bits (514), Expect = 1e-51, Method: Composition-based stats.
Identities = 99/184 (53%), Positives = 127/184 (69%), Gaps = 2/184 (1%)
Query: 252 LQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLK 311
++ GI LFN+KPK+GI+FL +G + E+IA FL L+ T +GD+LG+ +
Sbjct: 13 IEHGIELFNKKPKRGIQFLQEQGXLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKE 72
Query: 312 VMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCN--PKVFTSA 369
V +AYVD DF EF A+R FL GFRLPGEAQKIDR+ EKFA RY +CN +F SA
Sbjct: 73 VXYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASA 132
Query: 370 DTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNE 429
DTAYVLAYS+I L TD H+P VKNK + + +I+ NRGI+D KDLPEEYL S++E I +
Sbjct: 133 DTAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEIEGKK 192
Query: 430 IKMK 433
I K
Sbjct: 193 IAXK 196
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 126/178 (70%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FLI + NT E+IA FL LNKT IGDYLGER+E ++V+H
Sbjct: 13 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 72
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+V+ +F + +A+R FL FRLPGEAQKIDR+ME FA+RYC+CN VF S DT YV
Sbjct: 73 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 132
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKM 432
L++++I+LNT HNP VK+K + + FI NRGI+DG DLPEE LR+L+E I K+
Sbjct: 133 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKI 190
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 126/178 (70%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FLI + NT E+IA FL LNKT IGDYLGER+E ++V+H
Sbjct: 13 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 72
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+V+ +F + +A+R FL FRLPGEAQKIDR+ME FA+RYC+CN VF S DT YV
Sbjct: 73 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 132
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKM 432
L++++I+LNT HNP VK+K + + FI NRGI+DG DLPEE LR+L+E I K+
Sbjct: 133 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKI 190
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 128/182 (70%)
Query: 255 GISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMH 314
G FN PKKGI+FLI + ++PE++A FL LNKT+IGDYLGER++ +KV+
Sbjct: 21 GRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQ 80
Query: 315 AYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYV 374
A+V+ +F + +A+R FL FRLPGEAQKIDR+ME FA RYC CNP VF S DT YV
Sbjct: 81 AFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYV 140
Query: 375 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKG 434
L++++I+LNT HN V++K +A+ FI NRGI++G DLPEE LR+L+E I K+
Sbjct: 141 LSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPE 200
Query: 435 DD 436
DD
Sbjct: 201 DD 202
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 130/193 (67%), Gaps = 3/193 (1%)
Query: 244 QRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLG 303
QR A ++ G FN PKKGI+FLI + ++PE++A FL LNKT+IGDYLG
Sbjct: 13 QRNA---QIAXGRKKFNXDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLG 69
Query: 304 EREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP 363
ER++ +KV+ A+V+ +F + +A+R FL FRLPGEAQKIDR E FA RYC CNP
Sbjct: 70 ERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNP 129
Query: 364 KVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFE 423
VF S DT YVL++++I LNT HN V++K +A+ FI NRGI++G DLPEE LR+L+E
Sbjct: 130 GVFQSTDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYE 189
Query: 424 RISRNEIKMKGDD 436
I K+ DD
Sbjct: 190 SIKNEPFKIPEDD 202
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 29/204 (14%)
Query: 256 ISLFNRKPKKGIEFLINAKKV-GNTPEEIAAFL-KNASDLNKTLIGDYLGEREELPLKVM 313
+ FN K KKGI+ LI + ++ +IA+FL N LNK IG L + ++ L +
Sbjct: 16 VETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSL--L 73
Query: 314 HAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYC--KCNPKV------ 365
++D FDF+ + DEAIRI L FRLPGE+Q+I+RI+E F+ +Y + N KV
Sbjct: 74 KEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKK 133
Query: 366 -----------------FTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGID 408
AD+ +VL+YS+I+LNTDSHNP VK+ M+ DD+ N RG
Sbjct: 134 AGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCY 193
Query: 409 DGKDLPEEYLRSLFERISRNEIKM 432
+GKD P YL ++ I EI M
Sbjct: 194 NGKDFPRWYLHKIYTSIKVKEIVM 217
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query: 253 QEGISLFNRKPKKGIEFLIN-AKKVGNTP-EEIAAFL-KNASDLNKTLIGDYLGEREELP 309
+E I FN KPK GI + ++ +P EEIA F + +L+ +GDYL E
Sbjct: 12 REIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAEN 71
Query: 310 LKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSA 369
+V+ A+ +F F E +R FL F+LPGEAQKIDR+++ F+ Y + NP V ++A
Sbjct: 72 QQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNA 131
Query: 370 DTAYVLAYSVILLNTDSHNPMV--KNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERI 425
D AY+LA+ I+LNTD HNP + KNKM+ D RN RG ++G D ++L L+ I
Sbjct: 132 DAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEI 189
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 19/201 (9%)
Query: 249 KLELQEGISLFNRKPKKGIEFLINAKKVG-NTPEEIAAFL-KNASDLNKTLIGDYLGERE 306
K E E + FN KPKKGI LI + ++ ++IA FL N + +NK IG L +
Sbjct: 24 KTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD 83
Query: 307 ELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCK---CNP 363
++ L ++ Y+ FDF + DEAIRI L FRLPGE+Q+I+RI+E F+ YC+ +P
Sbjct: 84 KVSL--LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDP 141
Query: 364 K------------VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGK 411
V AD+ ++L+YS+I+LNTD HNP VK MS +D+ N +G + K
Sbjct: 142 SKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHK 201
Query: 412 DLPEEYLRSLFERISRNEIKM 432
D P YL ++ I EI M
Sbjct: 202 DFPFWYLDRVYCSIRDKEIVM 222
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 124 bits (311), Expect = 4e-28, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 5/178 (2%)
Query: 253 QEGISLFNRKPKKGIEFL--INAKKVGNTPEEIAAFL-KNASDLNKTLIGDYLGEREELP 309
+E I FN KPK GI + I + + EEIA F + +L+ +GDYL E
Sbjct: 12 REIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAEN 71
Query: 310 LKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSA 369
+V+ A+ +F F E +R FL F+LPGEAQKIDR+++ F+ Y + NP V ++A
Sbjct: 72 QQVLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNA 131
Query: 370 DTAYVLAYSVILLNTDSHNPMV--KNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERI 425
D AY+LA+ I LNTD HNP + KNK + D RN RG ++G D ++L L+ I
Sbjct: 132 DAAYLLAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEELYSEI 189
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 244 QRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLN--------K 295
QR K E +GIS + R+ K ++ + ++ PE+ FLK AS LN
Sbjct: 347 QRELRKEEEAKGIS-WQRRWFKDFDYSVTPEEGALVPEKDDTFLKLASALNLSTKNAPSG 405
Query: 296 TLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFL 335
TL+GD +E+ L +H + FQR +DE I L
Sbjct: 406 TLVGDKEDRKED--LSSIH-----WRFQRELWDEEKEIVL 438
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 244 QRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLN--------K 295
QR K E +GIS + R+ K ++ + ++ PE+ FLK AS LN
Sbjct: 345 QRELRKEEEAKGIS-WQRRWFKDFDYSVTPEEGALVPEKDDTFLKLASALNLSTKNAPSG 403
Query: 296 TLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFL 335
TL+GD +E+ L +H + FQR +DE I L
Sbjct: 404 TLVGDKEDRKED--LSSIH-----WRFQRELWDEEKEIVL 436
>pdb|2B5D|X Chain X, Crystal Structure Of The Novel Alpha-Amylase Amyc From
Thermotoga Maritima
Length = 528
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 1042 IDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVL 1097
I ++S G G +T + W+Y ++ ++DL K+YN+ +PL+ +VL
Sbjct: 394 IATPADSSWGAGGYYETWLNGTNDWIYRHLHEMIERMIDLSKKYYNSSDPLVERVL 449
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 244 QRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLN--------K 295
QR K E +GIS + R+ K ++ + ++ PE+ FLK AS LN
Sbjct: 315 QRELRKEEEAKGIS-WQRRWFKDFDYSVTPEEGALVPEKDDTFLKLASALNLSTKNAPSG 373
Query: 296 TLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFL 335
TL+GD +E+ L +H + FQR +DE I L
Sbjct: 374 TLVGDKEDRKED--LSSIH-----WRFQRELWDEEKEIVL 406
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 997 PEIRKSALQVLFETLRN--HGHLFSLPLWERVFDSVLFPIFDYVR 1039
P+ K AL+VLF+ + HGH+ PL R+ D+ F Y++
Sbjct: 6 PQFEKGALEVLFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIK 50
>pdb|1IQO|A Chain A, Solution Structure Of Mth1880 From Methanobacterium
Thermoautotrophicum
pdb|1IQS|A Chain A, Minimized Average Structure Of Mth1880 From
Methanobacterium Thermoautotrophicum
Length = 88
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 400 FIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDD-LAVQQMQSMNSNRILGLDSILN 458
FI +GI KDLPEE+ + + + K+ DD +A+ ++ SN +L L S +
Sbjct: 2 FIATLKGIFTLKDLPEEFRPFVDYKAGLEKKKLSDDDEIAIISIKGTQSNHVLFLSSYNS 61
Query: 459 I-VIRKRGEE 467
+ IRK EE
Sbjct: 62 VDEIRKELEE 71
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 262 KPKKGIEFLINA-KKVGNTPEEIAAFLKNASDLNKTLIGDYLGE 304
K K+ ++FL A K++GN P+ A + + D+ K + G+ LGE
Sbjct: 379 KVKEVVDFLNAAYKEIGNPPKYYAILVMDGDDMGKVISGEVLGE 422
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 262 KPKKGIEFLINA-KKVGNTPEEIAAFLKNASDLNKTLIGDYLGE 304
K K+ ++FL A K++GN P+ A + + D+ K + G+ LGE
Sbjct: 394 KVKEVVDFLNAAYKEIGNPPKYYAILVMDGDDMGKVISGEVLGE 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,021,594
Number of Sequences: 62578
Number of extensions: 1423374
Number of successful extensions: 3235
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3206
Number of HSP's gapped (non-prelim): 34
length of query: 1415
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1304
effective length of database: 8,027,179
effective search space: 10467441416
effective search space used: 10467441416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)