Query 000569
Match_columns 1415
No_of_seqs 424 out of 1125
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 19:39:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 5E-278 1E-282 2703.1 141.6 1390 19-1415 390-1780(1780)
2 KOG0929 Guanine nucleotide exc 100.0 2E-219 4E-224 2055.9 79.8 1204 19-1407 309-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 5E-118 1E-122 1104.7 80.7 979 2-1124 305-1326(1386)
4 COG5307 SEC7 domain proteins [ 100.0 2E-88 4.3E-93 858.0 38.7 964 19-1146 34-1022(1024)
5 KOG0930 Guanine nucleotide exc 100.0 3.2E-52 6.9E-57 440.9 14.9 192 246-437 59-250 (395)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 1.9E-51 4.2E-56 441.2 20.5 183 248-430 1-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 4E-51 8.6E-56 442.2 18.9 185 246-430 2-190 (190)
8 smart00222 Sec7 Sec7 domain. D 100.0 1E-50 2.2E-55 437.2 20.8 183 248-430 2-187 (187)
9 KOG0931 Predicted guanine nucl 100.0 1.8E-50 4E-55 451.3 14.8 194 248-441 197-396 (627)
10 KOG1846 Uncharacterized conser 100.0 7.1E-39 1.5E-43 376.5 51.5 960 296-1315 347-1589(1777)
11 KOG1848 Uncharacterized conser 100.0 1.5E-40 3.3E-45 411.6 34.9 540 497-1125 518-1133(1610)
12 KOG0932 Guanine nucleotide exc 100.0 1.8E-28 3.9E-33 281.2 13.7 154 280-433 307-460 (774)
13 PF12783 Sec7_N: Guanine nucle 99.9 1.1E-24 2.5E-29 232.4 11.7 126 7-133 34-168 (168)
14 PF09324 DUF1981: Domain of un 99.8 8.6E-22 1.9E-26 184.9 5.8 86 798-883 1-86 (86)
15 KOG2023 Nuclear transport rece 96.3 0.73 1.6E-05 57.4 24.1 319 762-1148 125-528 (885)
16 PLN03076 ARF guanine nucleotid 95.2 6 0.00013 56.5 29.3 146 976-1147 1130-1279(1780)
17 KOG2171 Karyopherin (importin) 92.4 27 0.00058 47.1 25.4 139 980-1146 115-256 (1075)
18 KOG1824 TATA-binding protein-i 86.6 1.3E+02 0.0028 40.2 27.0 123 993-1147 580-703 (1233)
19 KOG1248 Uncharacterized conser 85.6 1.6E+02 0.0034 40.3 26.0 259 815-1152 97-384 (1176)
20 KOG1241 Karyopherin (importin) 85.2 1.1E+02 0.0024 39.8 22.2 179 868-1120 102-284 (859)
21 PF03378 CAS_CSE1: CAS/CSE pro 84.3 1.2E+02 0.0026 37.9 22.3 97 767-865 69-168 (435)
22 PF01602 Adaptin_N: Adaptin N 80.6 1.3E+02 0.0028 38.1 21.7 128 780-931 242-369 (526)
23 PF01602 Adaptin_N: Adaptin N 80.5 1.7E+02 0.0037 37.0 32.7 429 741-1316 54-484 (526)
24 PF14500 MMS19_N: Dos2-interac 77.1 56 0.0012 37.8 15.1 154 828-1032 95-257 (262)
25 PF12348 CLASP_N: CLASP N term 76.3 1.1E+02 0.0025 34.0 17.3 190 780-1015 18-209 (228)
26 PF12348 CLASP_N: CLASP N term 75.9 1.2E+02 0.0026 33.8 17.4 176 743-932 26-207 (228)
27 KOG1824 TATA-binding protein-i 74.7 3.1E+02 0.0067 36.9 21.6 132 980-1144 171-305 (1233)
28 PF11640 TAN: Telomere-length 73.2 42 0.00091 35.5 11.9 122 990-1122 11-135 (155)
29 KOG1848 Uncharacterized conser 69.8 4.7E+02 0.01 36.8 33.8 257 739-1025 857-1147(1610)
30 KOG2956 CLIP-associating prote 69.0 2.7E+02 0.0059 34.5 18.3 161 810-1021 326-487 (516)
31 PF12719 Cnd3: Nuclear condens 68.2 35 0.00077 40.1 11.1 65 996-1084 77-144 (298)
32 KOG1967 DNA repair/transcripti 62.6 2.5E+02 0.0055 37.5 17.3 162 831-1036 143-308 (1030)
33 PF02985 HEAT: HEAT repeat; I 61.6 14 0.0003 27.8 3.9 27 986-1012 3-29 (31)
34 cd00020 ARM Armadillo/beta-cat 60.3 35 0.00076 33.2 7.8 108 772-883 10-118 (120)
35 KOG0929 Guanine nucleotide exc 57.3 7.6 0.00016 53.7 3.1 40 978-1017 1066-1105(1514)
36 PF12719 Cnd3: Nuclear condens 56.4 1.1E+02 0.0025 35.9 12.5 106 768-882 26-140 (298)
37 PF12717 Cnd1: non-SMC mitotic 55.7 1.2E+02 0.0026 32.7 11.6 92 782-886 1-93 (178)
38 PF11864 DUF3384: Domain of un 55.6 5.2E+02 0.011 32.6 25.3 165 860-1040 181-358 (464)
39 PF12783 Sec7_N: Guanine nucle 54.7 79 0.0017 33.7 9.9 120 719-843 8-145 (168)
40 PF09324 DUF1981: Domain of un 52.9 13 0.00029 35.3 3.1 27 581-607 38-64 (86)
41 cd00020 ARM Armadillo/beta-cat 49.4 1.2E+02 0.0027 29.2 9.7 110 985-1123 9-119 (120)
42 PF04510 DUF577: Family of unk 49.1 3.8E+02 0.0082 29.0 14.9 60 1061-1125 99-165 (174)
43 PF08767 CRM1_C: CRM1 C termin 46.7 98 0.0021 36.9 9.9 111 995-1128 83-198 (319)
44 PF12755 Vac14_Fab1_bd: Vacuol 45.5 3E+02 0.0065 26.8 11.4 94 999-1123 2-95 (97)
45 cd03565 VHS_Tom1 VHS domain fa 45.5 1.5E+02 0.0033 30.9 9.9 72 39-110 40-114 (141)
46 PF12755 Vac14_Fab1_bd: Vacuol 45.2 1.4E+02 0.003 29.2 8.9 72 812-885 25-96 (97)
47 KOG2171 Karyopherin (importin) 44.7 1E+03 0.023 32.9 41.5 276 778-1130 46-344 (1075)
48 PF11864 DUF3384: Domain of un 43.3 7.8E+02 0.017 31.0 21.9 202 870-1151 148-358 (464)
49 PRK09687 putative lyase; Provi 41.9 3.8E+02 0.0082 31.4 13.6 22 988-1009 197-218 (280)
50 cd03568 VHS_STAM VHS domain fa 41.9 2.2E+02 0.0048 29.9 10.4 71 37-110 37-109 (144)
51 PF08767 CRM1_C: CRM1 C termin 39.3 5E+02 0.011 31.0 14.3 99 835-934 92-197 (319)
52 KOG2956 CLIP-associating prote 38.6 4.2E+02 0.0091 33.0 13.1 113 984-1124 288-400 (516)
53 PF12717 Cnd1: non-SMC mitotic 36.5 1.9E+02 0.0041 31.3 9.4 94 996-1126 1-94 (178)
54 KOG2023 Nuclear transport rece 35.8 3.7E+02 0.008 34.8 12.4 111 767-885 172-285 (885)
55 PF02985 HEAT: HEAT repeat; I 33.2 75 0.0016 23.8 3.9 27 771-797 2-28 (31)
56 PF13513 HEAT_EZ: HEAT-like re 32.2 73 0.0016 27.0 4.3 52 1071-1122 4-55 (55)
57 cd03568 VHS_STAM VHS domain fa 31.0 2.2E+02 0.0047 29.9 8.3 81 779-881 47-129 (144)
58 KOG0915 Uncharacterized conser 30.0 1.9E+03 0.042 31.6 19.1 146 979-1157 1035-1192(1702)
59 cd03567 VHS_GGA VHS domain fam 29.9 5.3E+02 0.012 26.9 10.9 76 38-114 39-123 (139)
60 KOG4535 HEAT and armadillo rep 29.7 7.9E+02 0.017 30.8 13.3 57 1081-1137 281-337 (728)
61 PF10508 Proteasom_PSMB: Prote 29.6 1.2E+03 0.026 29.7 16.3 226 747-1011 179-419 (503)
62 PF13646 HEAT_2: HEAT repeats; 28.7 1.3E+02 0.0027 27.8 5.6 71 779-874 10-80 (88)
63 KOG2933 Uncharacterized conser 27.0 2.4E+02 0.0051 33.3 8.2 68 1063-1132 99-166 (334)
64 cd03569 VHS_Hrs_Vps27p VHS dom 26.5 3.2E+02 0.0068 28.6 8.6 80 779-881 51-133 (142)
65 PF05004 IFRD: Interferon-rela 23.6 4.6E+02 0.01 31.1 10.3 79 1068-1146 57-138 (309)
66 PF12830 Nipped-B_C: Sister ch 23.5 9.5E+02 0.021 26.1 12.1 146 773-935 12-167 (187)
67 COG5240 SEC21 Vesicle coat com 22.3 7.3E+02 0.016 31.7 11.5 125 787-930 393-535 (898)
68 PF12530 DUF3730: Protein of u 22.0 1.2E+03 0.025 26.4 12.9 129 983-1142 38-168 (234)
69 KOG0166 Karyopherin (importin) 21.1 1.8E+03 0.039 28.2 17.5 71 773-846 156-226 (514)
70 PLN03205 ATR interacting prote 20.5 7.6E+02 0.016 30.1 10.7 90 711-804 316-410 (652)
71 PF10521 DUF2454: Protein of u 20.1 1.2E+03 0.026 27.2 12.8 62 977-1038 113-178 (282)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=4.7e-278 Score=2703.10 Aligned_cols=1390 Identities=86% Similarity=1.284 Sum_probs=1209.8
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhcCCCCCChhH
Q 000569 19 VEGWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 98 (1415)
Q Consensus 19 ~~g~~~~~~~~~~~~ik~~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eievf~~~i~l~ile~~~~~~~~~ 98 (1415)
.+|++|+++|+|+++||||||++|+||++|++++||++||+|||+|+.+||.|||.||||||++||++++|++++++|+|
T Consensus 390 ~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~q 469 (1780)
T PLN03076 390 NAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 469 (1780)
T ss_pred cccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987788999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 000569 99 KMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSM 178 (1415)
Q Consensus 99 k~~~l~~l~~l~~~p~~~velyvNYDCd~~~~ni~e~lv~~L~k~a~~~~~~~~~~~~~~~~~~l~~~~l~~l~~il~sl 178 (1415)
|+++|++|.+||+||++++|||||||||++++||||++|+.|+|+|+|.+++.+++..|+||+.||+.||+||++||+||
T Consensus 470 K~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl 549 (1780)
T PLN03076 470 KMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSM 549 (1780)
T ss_pred HHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777888999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHH
Q 000569 179 GDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISL 258 (1415)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~~~~~~~~ 258 (1415)
.+|+++....++.......+.... +....+.+....++++...+.++.++.+...+++++++++|++|..+++|+.+
T Consensus 550 ~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~ 626 (1780)
T PLN03076 550 GDWMNKQLRLPDPASLKKLDAVEN---NLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISL 626 (1780)
T ss_pred HHHHHhhccCCcccccccchhhcc---ccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999998765443322111111000 00000111111111111111222233334457788999999999999999999
Q ss_pred hccCchhHHHHHHHcCCCCCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccC
Q 000569 259 FNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGF 338 (1415)
Q Consensus 259 Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~~l~~f 338 (1415)
||+|||+||+||+++|+++++|++||+||++++||||++||||||+++++|.+||++|++.|||+|++||+|||.||++|
T Consensus 627 FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~F 706 (1780)
T PLN03076 627 FNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGF 706 (1780)
T ss_pred HccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhccCCCCCCCcHHHH
Q 000569 339 RLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYL 418 (1415)
Q Consensus 339 ~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L 418 (1415)
|||||+|+||||||+||+|||+|||+.|.|+|+||+||||+||||||+|||++|+|||+++|+||+||+|+|+|+|+|||
T Consensus 707 rLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L 786 (1780)
T PLN03076 707 RLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFM 786 (1780)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccCcchhHHhhhhcccccccccchhhhHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhccCCCceEEe
Q 000569 419 RSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAA 498 (1415)
Q Consensus 419 ~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 498 (1415)
++||++|+++||++++++.++.+++....++..|++++.+.+.|+++.++|+++++++++++++.++++.+++++.|+.+
T Consensus 787 ~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a 866 (1780)
T PLN03076 787 RSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAA 866 (1780)
T ss_pred HHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeec
Confidence 99999999999999998766554444455666788888888888888888999999999999999988777778899999
Q ss_pred chhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccch
Q 000569 499 TDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKN 578 (1415)
Q Consensus 499 ~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~~~~l~~~rDafl~sL~kfT~L~~~~~l~~Kn 578 (1415)
++.+|+|+||+++|+|++||||++|++++|+++++.||+||+.+|+|||.|||+++||+||++|||||+|++|.+|++||
T Consensus 867 ~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Kn 946 (1780)
T PLN03076 867 TDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKN 946 (1780)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhh
Q 000569 579 IDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQY 658 (1415)
Q Consensus 579 i~alraLl~la~~~G~~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 658 (1415)
++|+|+||+||+++||+|++||++||+|||||||||+++.|++||..++..|..+.+.++..++...|...++++++..+
T Consensus 947 v~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1026 (1780)
T PLN03076 947 IDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQY 1026 (1780)
T ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccch
Confidence 99999999999999999999999999999999999999999999877666555444444444455666666666555444
Q ss_pred hHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCC
Q 000569 659 AAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSAS 738 (1415)
Q Consensus 659 ~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~l~~i~s~~id~lF~~S~~L~~eal~~fv~ALc~vS~eel~~~~ 738 (1415)
......++++++...++..+..++++++.....++.++++|+++.+|+||++|++|+++||++||+|||+||++|+.+++
T Consensus 1027 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~ 1106 (1780)
T PLN03076 1027 AAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPS 1106 (1780)
T ss_pred hhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCC
Confidence 44444566776655555556678888988877777888889999999999999999999999999999999999999878
Q ss_pred CCceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhh
Q 000569 739 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 818 (1415)
Q Consensus 739 ~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~P 818 (1415)
+||+|+|+|||||++|||+|||++|+++|+++++||+++|||+|..|++||+|+||||+|||++++||++|+||++||+|
T Consensus 1107 ~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1107 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCccccccccc
Q 000569 819 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTT 898 (1415)
Q Consensus 819 fe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~ 898 (1415)
|++||.++.+.+|||+|++|+.+||++++++|+||||+||+||+.|+.++++.+|+.||+++++|++|||+.++.++.++
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888666789
Q ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhh
Q 000569 899 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHL 978 (1415)
Q Consensus 899 f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1415)
|.|||+||.+|++|+.++||||+||++||.|+++++++.+........ +..+..++.....+..+...+.+.+.+.
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1342 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKD----KEAPPSSPQSGKDGKQESGEFTDKDDHL 1342 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccc----cccccccccccccccccccccccchhHH
Confidence 999999999999999999999999999999999998876433211000 0000000110111111222334455667
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCC-CCCCCCC
Q 000569 979 YFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSP-GQGVDGD 1057 (1415)
Q Consensus 979 ~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~-~~~~~~~ 1057 (1415)
.+|+|||++|+++++|+|+|||++||+|||+||+.||+.|++++|+.||++||||||+.++..+++....++ ++.+...
T Consensus 1343 ~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999887655332211 1111111
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 000569 1058 TGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1137 (1415)
Q Consensus 1058 s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~ 1137 (1415)
..+.+.++|++|||++||+++++||++||+.|.++|++++++|.+||||+||++||||++||++||.+||++|++++|++
T Consensus 1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~ 1502 (1780)
T PLN03076 1423 QGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLE 1502 (1780)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 12457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhccCcchhhhhhhccccccCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000569 1138 VAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEI 1217 (1415)
Q Consensus 1138 i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~qLlliq~~~~l 1217 (1415)
|+++|.++|+.|+|.|...................+....++...+.......+.+...+.++|||||+||||||++.+|
T Consensus 1503 i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l 1582 (1780)
T PLN03076 1503 VVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEI 1582 (1780)
T ss_pred HHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999976443211100000000000000000011111111122333334566889999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHhhHHHHHHHHHHHhcCCCCCC
Q 000569 1218 YNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTY 1297 (1415)
Q Consensus 1218 ~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~ 1297 (1415)
|++++.+||++|+.+|+++|++||+|||+||+|++||++|||+|||+++++|||||||++|+++||+|||+||+|+++.+
T Consensus 1583 ~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~ 1662 (1780)
T PLN03076 1583 YNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLA 1662 (1780)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHhHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCchhhhhhhhhhHHHHHHHHHhcCChHHHHhhhhh
Q 000569 1298 EEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLAC 1377 (1415)
Q Consensus 1298 ~~~~i~~~L~~lc~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~ 1377 (1415)
.+.++|+||+++|.+||++|+++++.+++++..++.+++|.+|+|++++||++||+||||+||+||++|||++|++|+|.
T Consensus 1663 ~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~ 1742 (1780)
T PLN03076 1663 KEAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVR 1742 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHH
Confidence 89999999999999999999999974443333345668999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCCChhHHHHHHHHHHhhhhhhhhccC
Q 000569 1378 FFPLLSSLISCEHGSNEIQVALSDMLDASVGPILLRTC 1415 (1415)
Q Consensus 1378 ~ypll~~L~~~~~~~~elr~aL~~~f~~rvg~~~~~~~ 1415 (1415)
||||+|+|++||+.++|||.||+.+|++||||+++++|
T Consensus 1743 ~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~~~~~ 1780 (1780)
T PLN03076 1743 FFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVLLQSC 1780 (1780)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhHhccC
Confidence 99999999999888999999999999779999999998
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-219 Score=2055.86 Aligned_cols=1204 Identities=49% Similarity=0.783 Sum_probs=1049.3
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhcCCCCCChhH
Q 000569 19 VEGWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 98 (1415)
Q Consensus 19 ~~g~~~~~~~~~~~~ik~~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eievf~~~i~l~ile~~~~~~~~~ 98 (1415)
.+|++|+++..|+++||||||++|+||++|+++.||++||.||+.|+.+||.|+|.||||||++|+++++|..++ +|+|
T Consensus 309 ~~~~vf~s~~~fi~aikqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~-s~~q 387 (1514)
T KOG0929|consen 309 NSGSVFRSNEHFIDAIKQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTS-SFQQ 387 (1514)
T ss_pred ccchhhcCchhhHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCC-cccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999865 8999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 000569 99 KMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSM 178 (1415)
Q Consensus 99 k~~~l~~l~~l~~~p~~~velyvNYDCd~~~~ni~e~lv~~L~k~a~~~~~~~~~~~~~~~~~~l~~~~l~~l~~il~sl 178 (1415)
|+++|..+.++|.||+.+||+|+|||||.+.+||||++++.++|+|+|.+ +......|+||..+|..+++||+++++++
T Consensus 388 k~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~-~s~~~~~P~~~~~~~~~s~kcL~s~l~s~ 466 (1514)
T KOG0929|consen 388 KMMVLRILTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRT-GSNLELSPVQELALRLKSLKCLVSILKSM 466 (1514)
T ss_pred hhHHHHHHhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCC-ccccCCCCchhhhHhhhhhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999943 56677788999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHH
Q 000569 179 GDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISL 258 (1415)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~~~~~~~~ 258 (1415)
..|.+++...++...++..... +..+. .+ ++ ..+...+++++++..|.+|. +++|+.+
T Consensus 467 s~w~~~~~~~~~~~t~~~~~~~-----~~~~~------~~-------s~---~~~~~~~~~~q~e~~k~ek~-l~~~i~~ 524 (1514)
T KOG0929|consen 467 SGWNDNQLNVEGVITGKKSSTT-----PIENE------LN-------SD---TQSNDADDPEQFEALKSEKQ-LQEGIQL 524 (1514)
T ss_pred hhhccccccCCCcccCccccCc-----chhhh------cc-------Cc---cccccccChhhhhhhhhhcc-hHHHHHH
Confidence 9999975544433222111100 00000 00 00 12233477899999999999 9999999
Q ss_pred hccCchhHHHHHHHcCCCCCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccC
Q 000569 259 FNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGF 338 (1415)
Q Consensus 259 Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~~l~~f 338 (1415)
||.+|++||+||+++|+++.+|.+||+||+.+.+|||+++|+|||+++++|++||++||+.|||++++|++|||.||++|
T Consensus 525 fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~f 604 (1514)
T KOG0929|consen 525 FNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGF 604 (1514)
T ss_pred hccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhCCC-CCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhccCCCCCCCcHHH
Q 000569 339 RLPGEAQKIDRIMEKFAERYCKCNPK-VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEY 417 (1415)
Q Consensus 339 ~LpgE~q~idri~e~Fa~~y~~~n~~-~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~ 417 (1415)
|||||+|+|||+|++||+|||+|||+ .|.|||+||+||||+||||||+|||++|+|||++|||+||||||+|+|+|++|
T Consensus 605 rLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~ 684 (1514)
T KOG0929|consen 605 RLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEY 684 (1514)
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccCcchhHHhhhhcccccccccchhhhHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhccCCCceEE
Q 000569 418 LRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHA 497 (1415)
Q Consensus 418 L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 497 (1415)
|+.+||+|..+||+|.++...+...+.....+..+.++..+...+++....++... +..+++++....+.||.
T Consensus 685 L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ 757 (1514)
T KOG0929|consen 685 LEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYS 757 (1514)
T ss_pred HHHHHHHhhhccccccccccccccCCCCcchhhhccccccccchhhhhhHHHhhhh-------HHHHHHhccccccccee
Confidence 99999999999999999887765555555566677777665544444333222211 33455566666799999
Q ss_pred echhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccc
Q 000569 498 ATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQK 577 (1415)
Q Consensus 498 ~~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~~~~l~~~rDafl~sL~kfT~L~~~~~l~~K 577 (1415)
++|.+|||+||+.+|+|+++|++..|+.++|..++..|++||+.++||+|.|+|+..||||+++|++||.++.+.+|+.|
T Consensus 758 ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~k 837 (1514)
T KOG0929|consen 758 ATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQK 837 (1514)
T ss_pred cccceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchh
Q 000569 578 NIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQ 657 (1415)
Q Consensus 578 ni~alraLl~la~~~G~~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 657 (1415)
|++++|+++.||.++||++.++|.+|+.|++|+|++|++++|++++...+.. . .+ +..
T Consensus 838 Ni~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~----s-----~~----~~~--------- 895 (1514)
T KOG0929|consen 838 NIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVV----S-----QR----EDY--------- 895 (1514)
T ss_pred hHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchh----h-----hc----hhc---------
Confidence 9999999999999999999999999999999999999999999876543321 1 00 000
Q ss_pred hhHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcC
Q 000569 658 YAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSA 737 (1415)
Q Consensus 658 ~~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~l~~i~s~~id~lF~~S~~L~~eal~~fv~ALc~vS~eel~~~ 737 (1415)
...+|+|+..+.++.........++. .+ .++|+||++|.++++++|++|++|||++|++|+.++
T Consensus 896 ----~~~~~~~~~~~~~s~~e~~~~~~s~s-------~v-----i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~ 959 (1514)
T KOG0929|consen 896 ----KKPGGSYDSSGDGSRIENVGEKSSVS-------VV-----IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSP 959 (1514)
T ss_pred ----cCCcccccccccccchhccccchhHH-------HH-----HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCC
Confidence 00123444333322111111122221 11 247999999999999999999999999999999998
Q ss_pred CCCceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhh
Q 000569 738 SDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMK 817 (1415)
Q Consensus 738 ~~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~ 817 (1415)
++||+|+|||+|||++|||.|||++|++||.++++||+.|||++|..|+.||+|+|||+.|||++++|+++|+||++||+
T Consensus 960 ~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~ 1039 (1514)
T KOG0929|consen 960 STPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLR 1039 (1514)
T ss_pred CCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccc
Q 000569 818 PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETT 897 (1415)
Q Consensus 818 Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~ 897 (1415)
||+++|.++.+++|||+|++|+. +|++|||+.||+|++.+|.+.++.+|..+|+++..|+++|+..+.+++.+
T Consensus 1040 Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~ 1112 (1514)
T KOG0929|consen 1040 PFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD 1112 (1514)
T ss_pred cchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999888866668
Q ss_pred cHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchh
Q 000569 898 TFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDH 977 (1415)
Q Consensus 898 ~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1415)
+|.||+.||.+|+++....++|++||.++|.|+.+++++ .+.+.. .. + +.. +.+.|
T Consensus 1113 sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~--~~~~~~---------~~--------~--~~~---~~~~~ 1168 (1514)
T KOG0929|consen 1113 SFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG--VYNEKL---------KV--------G--KDS---EFDVW 1168 (1514)
T ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc--cchhhc---------cc--------c--ccc---ccccc
Confidence 999999999999999999999999999999999999876 111100 00 0 000 34457
Q ss_pred hhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCC
Q 000569 978 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGD 1057 (1415)
Q Consensus 978 ~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~ 1057 (1415)
..+|+|+|+++++++.|+|++||++|++++|+|+..||+.|+.+||+.+|+ +|||||+.++......
T Consensus 1169 ~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~------------ 1235 (1514)
T KOG0929|consen 1169 NSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES------------ 1235 (1514)
T ss_pred eeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh------------
Confidence 899999999999999999999999999999999999999999999999999 9999999998754432
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 000569 1058 TGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1137 (1415)
Q Consensus 1058 s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~ 1137 (1415)
+..+|++|||++||+.+|+||++||+.++.+|++++.+|.+||||+|+++||+|++||++|+.+||.+|++++|++
T Consensus 1236 ----~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde 1311 (1514)
T KOG0929|consen 1236 ----EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDE 1311 (1514)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHH
Confidence 3344999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhccCcchhhhhhhccccccCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000569 1138 VAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEI 1217 (1415)
Q Consensus 1138 i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~qLlliq~~~~l 1217 (1415)
+++++.++|++|+|+++..++...+... .. . +........+.+.....|++ .++
T Consensus 1312 ~~~~~~e~~~~T~p~~l~~~~~~~~~~~--~~-~------------e~~~~~~~~v~~~~~~~k~~-----------~~~ 1365 (1514)
T KOG0929|consen 1312 ICNCILEAFKTTLPHELLTWRTMSDISS--EQ-N------------ELSQTISNIVFYPATESKED-----------TDL 1365 (1514)
T ss_pred HHHHHHHHHHhcCcHHHhcccccCCCcc--cc-c------------cccccccccccccccchHHH-----------HHH
Confidence 9999999999999999988854433210 00 0 00000000011111223332 344
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHhhHHHHHHHHHHHhcCCCCCC
Q 000569 1218 YNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTY 1297 (1415)
Q Consensus 1218 ~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~ 1297 (1415)
| +++.+||++|+.+|+++|.++++||++||+|++||++||++|.+++ +|||||||++|+++||.|||+||.|+++.+
T Consensus 1366 ~-~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~~~--~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~ 1442 (1514)
T KOG0929|consen 1366 L-GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGKGSQ--KPNLLRQETSSLACYLDILFRLLKDDPRVS 1442 (1514)
T ss_pred H-HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcccCC--CcchhhHHHHHHHHHHHHHHHHhccCcccc
Confidence 4 7789999999999999999999999999999999999999995544 599999999999999999999999999876
Q ss_pred cHHhHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCchhhhhhhhhhHHHHHHHHHhcCChHHHHhhhhh
Q 000569 1298 EEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLAC 1377 (1415)
Q Consensus 1298 ~~~~i~~~L~~lc~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~ 1377 (1415)
+++++||+++|.+||++|+++..++ + +|| +. . +++.|..|+|.
T Consensus 1443 --~~i~~~l~~~c~~~l~~y~~~~~~~---------------------~---~a~-------~~---~-~~~~~~~~~~~ 1485 (1514)
T KOG0929|consen 1443 --EEIESRLVTVCSEVLKGYLSLTSET---------------------H---EAW-------LT---P-SDEEFSARAPL 1485 (1514)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccccc---------------------h---hhh-------cC---C-cHHHHhccCch
Confidence 8999999999999999999998642 2 577 22 2 99999999999
Q ss_pred hHHHHHHHhcccCCChhHHHHHHHHHHhhh
Q 000569 1378 FFPLLSSLISCEHGSNEIQVALSDMLDASV 1407 (1415)
Q Consensus 1378 ~ypll~~L~~~~~~~~elr~aL~~~f~~rv 1407 (1415)
+|++||+++.++. ++++|++++.|| .||
T Consensus 1486 ~~~~l~~~~~~~~-~~~~r~~~~~~~-lr~ 1513 (1514)
T KOG0929|consen 1486 YYALLCAMCAFDL-DPELRHLLRFFF-LRV 1513 (1514)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHhh-hhc
Confidence 9999999999994 679999999999 666
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-118 Score=1104.65 Aligned_cols=979 Identities=27% Similarity=0.428 Sum_probs=747.4
Q ss_pred Ccccccccchhhhhhhc------cccccccCCHHHHHHHHHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHHHHHhH
Q 000569 2 CNRICFNSFWGRFAGSL------VEGWLIALTTRFLGAIKQYLCLSLLKNS-----ASTLMIVFQLSCSIFMSLVSRFRA 70 (1415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~ik~~Lc~~L~~n~-----~s~~~~vf~lsl~if~~l~~~~r~ 70 (1415)
-|++++|+.++.|++-| +|||.|+.+|+|+..|++.+.++++.-. .|-.+.++++-+.+.++|..++|.
T Consensus 305 ~n~~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~ 384 (1386)
T KOG0928|consen 305 TNTVAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALRE 384 (1386)
T ss_pred cccccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhh
Confidence 38999999999999988 8899999999999999999999999999 788888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhHHHHHHHHHHhhccCCCCC
Q 000569 71 GLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPS 150 (1415)
Q Consensus 71 ~lK~eievf~~~i~l~ile~~~~~~~~~k~~~l~~l~~l~~~p~~~velyvNYDCd~~~~ni~e~lv~~L~k~a~~~~~~ 150 (1415)
++|.|+|.||+.+.+++......|+|+||++++|++..+|+.|.+++|+|+|||||++|+||||.+++.|+|+|++....
T Consensus 385 ~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~ 464 (1386)
T KOG0928|consen 385 QLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGP 464 (1386)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccc
Confidence 99999999999999999877777899999999999999999999999999999999999999999999999999987644
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 000569 151 TATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHS 230 (1415)
Q Consensus 151 ~~~~~~~~~~~~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1415)
.++...++ +. +.++.+|.+.+.......+. ++-+.
T Consensus 465 ~tt~~i~~---------l~--l~~v~~l~e~~~~~l~~~d~---------------------------~ef~~------- 499 (1386)
T KOG0928|consen 465 LTTASILP---------LD--LEGVLGLAENMIDELQDSDR---------------------------EEFWT------- 499 (1386)
T ss_pred cccccccc---------hH--HHHHHHHHHHHHhhccccCc---------------------------Ccccc-------
Confidence 34433333 22 33444555544332210000 00000
Q ss_pred CCCcCCCChHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHcCCCCC--CHHHHHHHHHcCCCCChhHHHhhhcCCCch
Q 000569 231 EASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN--TPEEIAAFLKNASDLNKTLIGDYLGEREEL 308 (1415)
Q Consensus 231 ~~~~~~~~~~~~~~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~--~p~~ia~fL~~~~~l~k~~igeylg~~~~~ 308 (1415)
.. -+-...+.+.|++|+++..|+++||+||||||+||+++|+|+. +|..+|.|++++++|||++||+|||++++
T Consensus 500 --~k-~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~- 575 (1386)
T KOG0928|consen 500 --DK-CEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN- 575 (1386)
T ss_pred --CC-cchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch-
Confidence 00 0111123333447999999999999999999999999999994 89999999999999999999999999997
Q ss_pred hHHHHHHHHhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCC-CCCCCccHHHHHHHHHHHhhhccC
Q 000569 309 PLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP-KVFTSADTAYVLAYSVILLNTDSH 387 (1415)
Q Consensus 309 ~~~vl~~y~~~~df~~~~~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~-~~f~~~d~~y~l~ysiimLntdlh 387 (1415)
.+||++|++.|||+||++|+|||.||++||||||+|+|+|+||+||+|||++|+ ++|.++|+||+|||||||||||+|
T Consensus 576 -~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqH 654 (1386)
T KOG0928|consen 576 -VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQH 654 (1386)
T ss_pred -HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheeccccc
Confidence 699999999999999999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred CCccCCCCCHHhHHHhhccCCCCCCCcHHHHHHHHHHHhhccccccCcchhHHhhhhcccccccccchhhhHHHhhhhhh
Q 000569 388 NPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEE 467 (1415)
Q Consensus 388 n~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1415)
|||||++||++||+||+||+|+|+|||++||.+||++|+.+||+||+++.+.... ..+.|+.+..
T Consensus 655 NpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~----------~~~~W~~L~~----- 719 (1386)
T KOG0928|consen 655 NPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEM----------FEYRWINLIS----- 719 (1386)
T ss_pred ChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhh----------hHHHHHHHHh-----
Confidence 9999999999999999999999999999999999999999999999988654322 1122222111
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccCCCceEEechhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHH
Q 000569 468 KYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTA 547 (1415)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~ 547 (1415)
++...+..+.......++|.||..+|+|++||++++|+.+.++.+.++|++|+++|+.|++
T Consensus 720 -------------------~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA 780 (1386)
T KOG0928|consen 720 -------------------RSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISA 780 (1386)
T ss_pred -------------------cccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2223344444555667899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhccCCCCCc----c------ccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhc
Q 000569 548 VMSMKTHRDAFVTSLAKFTSLHSPAD----I------KQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLG 617 (1415)
Q Consensus 548 ~~~l~~~rDafl~sL~kfT~L~~~~~----l------~~Kni~alraLl~la~~~G~~L~~sW~~IL~~isqle~lqli~ 617 (1415)
.||+.++.|..+.+|||||.|.+|.. + ..|...|.+|++-+|+..|++++.+|+.|++|+.||.++++++
T Consensus 781 ~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp 860 (1386)
T KOG0928|consen 781 YYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLP 860 (1386)
T ss_pred HhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999999976652 1 3477899999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCcchhhhhcccccccccc--ccCCCCchhhhHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhH
Q 000569 618 EGAPPDATFFAFPQSESEKSKQAKSTILPVL--KKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNM 695 (1415)
Q Consensus 618 ~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~ 695 (1415)
..+.++..+.. .. .+ ..+.+.|.. +...++. .+.-..+.++|.+ +.+...++.+|+++++....+.+
T Consensus 861 ~~~~e~~~~~~--~~----~~-~~~~~~~~~~~~~~k~~~--ss~Lls~fs~~Ls-~d~e~~~~~Ptee~l~~~~~a~~- 929 (1386)
T KOG0928|consen 861 LRLIEDLKNEP--EL----LK-LNKLPVPQQEISINKPRK--SSGLLSRFSSYLS-GDEEEERPCPTEEELSASKKALE- 929 (1386)
T ss_pred HhhhhhhhcCc--cc----cc-cCCCCCCccccCcccccc--cchHHHHHHHhcC-CcccccCCCCcHHHHhhhHHHhh-
Confidence 66654433322 10 00 000001000 0000000 0001111122322 22334467799999998776664
Q ss_pred HHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 000569 696 LEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFV 775 (1415)
Q Consensus 696 l~~i~s~~id~lF~~S~~L~~eal~~fv~ALc~vS~eel~~~~~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~ 775 (1415)
||.+|.++.+|++|+.|..+++.+++++|...+...-...++.+.|++++|+.|...|.+|+.+.|..+.+++-..++
T Consensus 930 --cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~ 1007 (1386)
T KOG0928|consen 930 --CIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLI 1007 (1386)
T ss_pred --HHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHH
Confidence 555788999999999999999999999999988653111246789999999999999999999999988888877776
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcc--hHHHHHHHHHHHHHHHHccccccc--
Q 000569 776 NIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN--AVEIRELIIRCVSQMVLSRVNNVK-- 851 (1415)
Q Consensus 776 ~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~--~~eire~vL~cl~~~i~~~~~~I~-- 851 (1415)
..-..+... ...|+-.+.+++.|.+..++ ..-.++++++..+....+ ....-+.+---+.+++.+...++.
T Consensus 1008 ~~~~~~~~l-vek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~ 1082 (1386)
T KOG0928|consen 1008 QTLMGSPLL-VEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSK 1082 (1386)
T ss_pred HhhcCCchh-HHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 544333333 44577777778888887533 223467778877654432 234556666777888888888775
Q ss_pred cCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCC-ccccHHHHHHHHHHH
Q 000569 852 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFN-KDISLNAIAFLRFCA 930 (1415)
Q Consensus 852 SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d-~niSL~AI~~L~~~~ 930 (1415)
.||.++|..|..++. ++..-..+|..+...+.|-.+ ++ ++.|..||+|...|+..... ..-++..+
T Consensus 1083 ~~w~~~~slL~~~~~--h~~a~~~~~~~~l~~m~e~~h-l~---~~~fe~~v~~~~~fve~~~~~~~~~l~~l------- 1149 (1386)
T KOG0928|consen 1083 DGWALLFSLLELTAR--HPEADFLKFYRLLSKMSEASH-LT---PDNFELYVDCGSTFVEARVGQIMRSLSLL------- 1149 (1386)
T ss_pred ccHHHHHHHHHHHhc--CCchhHHHHHHHHHHhhcccc-CC---hHHHHHHHHHHHHHHHHHHHHHHHhcchh-------
Confidence 499999999999887 444445566666655555533 33 58999999999999855321 01111111
Q ss_pred HhhhcccccccCCCchhhhcccCCCCCCCcchhhhhccc-ccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 000569 931 TKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENG-EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFE 1009 (1415)
Q Consensus 931 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~ 1009 (1415)
+.++..+... .+.. . + .+....+.. ...+.......|.+|+..+.++|.|+|.+||+.||+.+.+
T Consensus 1150 de~s~sg~~~-~kw~---~-----~-----~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr 1215 (1386)
T KOG0928|consen 1150 DEMSSSGEVL-DKWE---I-----E-----AKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQR 1215 (1386)
T ss_pred hhhcccccch-hHHH---H-----H-----HhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHH
Confidence 1111111000 0000 0 0 000000000 1111223346999999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 000569 1010 TLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTV 1089 (1415)
Q Consensus 1010 iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l 1089 (1415)
++..-+..+.+..|..||+.|+||+++.+.......+. ... =+..|..+|.+.++++|.+++..+
T Consensus 1216 ~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~------------~~~---~me~t~~~~~~Ll~k~~L~~lq~l 1280 (1386)
T KOG0928|consen 1216 IIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDASE------------KGN---EMEVTLLLATKLLSKVFLQELQDL 1280 (1386)
T ss_pred HHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccccc------------ccc---hHHHHHHHHhhhhHHHHHHHHHHH
Confidence 87788999999999999999999999999875443211 111 256999999999999999999877
Q ss_pred hH------HHHHHHHHHHHHHcccc-----hhHHHHHHHHHHHHHH
Q 000569 1090 NP------LLRKVLMLLVSFIKRPH-----QSLAGIGIAAFVRLMS 1124 (1415)
Q Consensus 1090 ~~------~l~~~l~lL~~~i~q~~-----e~la~ig~~~l~~li~ 1124 (1415)
.. +|..+++.+..+|.-.. +.+-.+....++..+.
T Consensus 1281 s~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~ 1326 (1386)
T KOG0928|consen 1281 SSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLL 1326 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhh
Confidence 63 57777777777777532 4555555555555444
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=2e-88 Score=858.00 Aligned_cols=964 Identities=25% Similarity=0.348 Sum_probs=728.1
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhcCCCCCChhH
Q 000569 19 VEGWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 98 (1415)
Q Consensus 19 ~~g~~~~~~~~~~~~ik~~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eievf~~~i~l~ile~~~~~~~~~ 98 (1415)
+.+...+.++.|+.++++|+|+.+.++++|+.++||+.+|+|+|.++..++.++|.|+++||.++++++++.+ +++..|
T Consensus 34 ~~~~~l~~~~~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q 112 (1024)
T COG5307 34 VSYSILRDFKLLLDLLFPYLRLKLSLSARSPLLPVFEVGLEIIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQ 112 (1024)
T ss_pred chHHHhccchHHHHHhcchhhhhhhhcccccchhhhhhhHHHHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999987 677899
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCCCCC-chhHHHHHHHHHHhhccCCCCCC----------CCCC------CChhhh
Q 000569 99 KMIVLRFLEKLCIDSQILVDIFINYDCDVN-SSNIFERMVNGLLKTAQGVPPST----------ATSL------LPPQES 161 (1415)
Q Consensus 99 k~~~l~~l~~l~~~p~~~velyvNYDCd~~-~~ni~e~lv~~L~k~a~~~~~~~----------~~~~------~~~~~~ 161 (1415)
|..-|......|..|+ +++|+||||... ..|++++....+++.+...|+-. .... ....+.
T Consensus 113 ~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 190 (1024)
T COG5307 113 KSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDF 190 (1024)
T ss_pred hhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhhhhhhhcCCCCCccccccccch
Confidence 9999999999999999 999999999987 89999999999998775443311 0000 113467
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCCCCcccC-C--CCCCCCCcCCCC
Q 000569 162 TMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEG-S--DSHSEASSEISD 238 (1415)
Q Consensus 162 ~l~~~~l~~l~~il~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 238 (1415)
..+.....|.+.+++++.. ..+. +.... ...+....+ .+ +. ...++..... . ...++.....+.
T Consensus 191 q~~~~~~~~~is~l~~l~~---~sl~-~s~~~--~~~~~~~~s--~e-~~----~~~~~~~~~~~~~~~~d~~s~~~~~~ 257 (1024)
T COG5307 191 QCDLDSSDCSISFLKGLTK---NSLV-PSAYY--TNKDVPPLS--GE-GL----VSGSKSMVNSMKNSSRDSSSFVNSDS 257 (1024)
T ss_pred hhhhHHHHHHHHHHHHHhh---cccc-hhhhh--cccCCCCcc--cc-hh----hhcCCcccccccccccChhhhccchH
Confidence 7889999999999998882 2111 00000 000000000 00 00 0000000000 0 000000001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHcCCCCC-CHHHHHHHHHcCCC-CChhHHHhhhcCCCchhHHHHHHH
Q 000569 239 VSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLKNASD-LNKTLIGDYLGEREELPLKVMHAY 316 (1415)
Q Consensus 239 ~~~~~~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~p~~ia~fL~~~~~-l~k~~igeylg~~~~~~~~vl~~y 316 (1415)
.-.....|+||..+++++..||.+|++||..|.+.+++.. ++.++|.||.++.+ +||+.+|+|||++++.|..||++|
T Consensus 258 ~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~F 337 (1024)
T COG5307 258 SIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREF 337 (1024)
T ss_pred HHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHH
Confidence 2233346889999999999999999999999999999974 79999999998876 999999999999999999999999
Q ss_pred HhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCCc-cHHHHHHHHHHHhhhccCCCccCCCC
Q 000569 317 VDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSA-DTAYVLAYSVILLNTDSHNPMVKNKM 395 (1415)
Q Consensus 317 ~~~~df~~~~~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~-d~~y~l~ysiimLntdlhn~~~k~km 395 (1415)
++.|||+|++||+|||.||+.||||||+|+||||||+||.+||+|||+.|.++ |+||+||||+||||||+|||++|.||
T Consensus 338 i~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kM 417 (1024)
T COG5307 338 ISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKM 417 (1024)
T ss_pred HHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccc
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CHHhHHHhhccCCCCCCCcHHHHHHHHHHHhhccccccCcchhHHhhhhcccccccccchhhhHHHhhhhhhhhhhhhHH
Q 000569 396 SADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDD 475 (1415)
Q Consensus 396 t~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1415)
|++||++|++|+|+|++||++||+++|++|+++||++++++....... +. .|..... +..
T Consensus 418 T~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~----------~~-----~~~~~~s-----s~~ 477 (1024)
T COG5307 418 TFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSP----------ED-----NWPSLDS-----SFT 477 (1024)
T ss_pred cHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccc----------cc-----cchhhhh-----hhh
Confidence 999999999999999999999999999999999999999876332110 10 1110000 000
Q ss_pred HHHHHHHHHHHhhccCCCceEEechhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 000569 476 LIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHR 555 (1415)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~f~~~~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~~~~l~~~r 555 (1415)
. +. .++ +.......+.+.+|+.++++.+|.+++++++..+..++....+..|.+ +|+.|++..+|
T Consensus 478 ~---~~-~~~----rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~ 542 (1024)
T COG5307 478 N---IA-EFG----RDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPR 542 (1024)
T ss_pred h---hh-hcc----cccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccc-------hhhcceecchh
Confidence 0 00 000 111222245678899999999999999999999999988766655554 99999999999
Q ss_pred HHHHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccccCCCcchh
Q 000569 556 DAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESE 635 (1415)
Q Consensus 556 Dafl~sL~kfT~L~~~~~l~~Kni~alraLl~la~~~G~~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~ 635 (1415)
++|+.+++++|.+++.. ...|+++...|..++.+++++++.+.++.|. .+. . |.+...
T Consensus 543 ~~~~~~~s~~t~l~~~S-----------------~~~~~~~~~~~~d~~~~is~~~~~~~i~~~~-~~q--l--~~v~~~ 600 (1024)
T COG5307 543 DAFLESLSEFTTLINSS-----------------VSEGPYLFIPSEDSLLSISVLELAARIGRGF-EDQ--L--SDVKLF 600 (1024)
T ss_pred HHHHHHhhccCCccccC-----------------ccccccccCccccccchhhHHHHHHHhcccc-hhh--c--chhHHh
Confidence 99999999999987533 6789999999999999999999999998776 221 1 111000
Q ss_pred hhhccccccccccccCCCCchhhhHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCC
Q 000569 636 KSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLN 715 (1415)
Q Consensus 636 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~l~~i~s~~id~lF~~S~~L~ 715 (1415)
. .......+...++...... ..... ..+........ ....++ +.......++. ...++++...+.++
T Consensus 601 ~--~~~k~~~~~i~~s~~~~~i-~~~~~--~~~~~~l~~~~--~~~~~~-~~~~~~~~~~~-----~~~~~i~~~~s~~s 667 (1024)
T COG5307 601 R--LRSKSGNKEILSSSLLSNI-ENKSL--KLYLSSLIEDG--KHFSPS-IVKKLGSPELP-----KLNPDISSGKSKLS 667 (1024)
T ss_pred H--Hhhccccccccchhhhhhh-hhhHh--hhhhhhhcCCC--cccccc-ccccccCcccc-----ccCccccccccccc
Confidence 0 0000000000000000000 00000 00000000000 000000 00000000110 12377888888898
Q ss_pred h-HHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000569 716 S-EAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLR 794 (1415)
Q Consensus 716 ~-eal~~fv~ALc~vS~eel~~~~~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLr 794 (1415)
. .++++++++++... + ..| .+|+.++++++||+||+.+ ..||+++...+..++++.+..+..+++++.+
T Consensus 668 ~~~~~l~~~k~~~~~d---~---~~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~ 737 (1024)
T COG5307 668 VWSAVLSVFKAILSSD---L---PSP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKS 737 (1024)
T ss_pred ccchHHHHHHHHHhcc---C---CCC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchhh
Confidence 8 89999999999822 1 123 8999999999999999987 9999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHH
Q 000569 795 QLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVL 874 (1415)
Q Consensus 795 qLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~ 874 (1415)
|+.++|.+.+|+.++.||..++.|+++.+.....+.|++..+.|..++++.+...+.+| +++|.++..+..... ++
T Consensus 738 q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~ 813 (1024)
T COG5307 738 QLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---LR 813 (1024)
T ss_pred hhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---hh
Confidence 99999999999999999999999999988888889999999999999999999999999 999999987665322 44
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCC
Q 000569 875 LAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIP 954 (1415)
Q Consensus 875 ~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 954 (1415)
..++.+.. .|. +.. ..++|.+++.+-.....+..++.+.+.++.+++.....+.....
T Consensus 814 ~~~s~~~~--~e~---v~s-~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~---------------- 871 (1024)
T COG5307 814 YILSSLSN--DEL---VLS-QENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENWKN---------------- 871 (1024)
T ss_pred hHHHHhcc--hhh---hhC-hhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHHHH----------------
Confidence 45544432 122 211 13789999988888888888889999999988765443322100
Q ss_pred CCCCCcchhhhhcccccCCcchhhhhHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhh
Q 000569 955 PASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSF-DPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFP 1033 (1415)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~-d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFP 1033 (1415)
...... .+.-..+.|++.|.++.++.. -...++ |..+..+++.+..++|+.+++.-++|
T Consensus 872 ----------~~~~~~--~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~ 931 (1024)
T COG5307 872 ----------LSSVLS--ANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFY 931 (1024)
T ss_pred ----------HHHHHH--hhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhhe
Confidence 000000 011125789999999999874 567777 99999999999999999999999999
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHH
Q 000569 1034 IFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAG 1113 (1415)
Q Consensus 1034 if~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ 1113 (1415)
++............ + -+++..-.|.++|.+.|+...+.+|+.+|+.+. ++.+.+.++..|
T Consensus 932 ~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c---------- 991 (1024)
T COG5307 932 IKSGASGPNSDKTN------L---DNDEIELVWASTDLLAALKEFIELFNSIFEKLE-ILAGKLILLHQC---------- 991 (1024)
T ss_pred eccccccCcccccc------c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh----------
Confidence 99876532111100 0 123666799999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 000569 1114 IGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAA 1146 (1415)
Q Consensus 1114 ig~~~l~~li~~~g~~f~~~~W~~i~~~l~~l~ 1146 (1415)
.+|.+++...+...|.+-.|+++-..+.+++
T Consensus 992 --~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 1022 (1024)
T COG5307 992 --LNNCDQLGLGAIETLEEILWNKIDVPTNELF 1022 (1024)
T ss_pred --cCcHhhhhhhhHHHHhhhhHHHhhcccchhc
Confidence 6788899999999998899999988776655
No 5
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-52 Score=440.94 Aligned_cols=192 Identities=53% Similarity=0.904 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHcCCCCCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCC
Q 000569 246 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRM 325 (1415)
Q Consensus 246 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~ 325 (1415)
+++.+.+.-|-.+||.+|+|||+||+++.++..+|++||+||+.-.||+|++||+|||+++++|.+||++|++.+.|+++
T Consensus 59 ~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dl 138 (395)
T KOG0930|consen 59 KQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDL 138 (395)
T ss_pred HHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccc
Confidence 55566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhc
Q 000569 326 EFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 405 (1415)
Q Consensus 326 ~~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~ 405 (1415)
++++|||+||=+||||||+|+|||+||+||+|||.|||++|.|+|++|+|+||+|||||.|||||||.|-+++.||.+||
T Consensus 139 nlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNr 218 (395)
T KOG0930|consen 139 NLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNR 218 (395)
T ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHhhccccccCcch
Q 000569 406 GIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 437 (1415)
Q Consensus 406 ~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~ 437 (1415)
|||.|.|+|+|.|..+|++|+.++++.+++..
T Consensus 219 gineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 219 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 99999999999999999999999999999864
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=1.9e-51 Score=441.22 Aligned_cols=183 Identities=59% Similarity=1.018 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHcCCC-CCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCC
Q 000569 248 YKLELQEGISLFNRKPKKGIEFLINAKKV-GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 326 (1415)
Q Consensus 248 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~-~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~ 326 (1415)
+|..+++|+.+||++|++||+||++.+++ +++|++||+||+++++|||.+||+|||+++++|.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 47789999999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC-CccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhc
Q 000569 327 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT-SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 405 (1415)
Q Consensus 327 ~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~-~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~ 405 (1415)
|++|||.||.+|+||||+|+|||||+.||++||+|||+.+. |+|++|+||||+||||||+|||++|+|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHhhccc
Q 000569 406 GIDDGKDLPEEYLRSLFERISRNEI 430 (1415)
Q Consensus 406 ~~~~~~~~~~~~L~~iY~~I~~~~i 430 (1415)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=4e-51 Score=442.20 Aligned_cols=185 Identities=52% Similarity=0.951 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHcCCC--CCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCC
Q 000569 246 RAYKLELQEGISLFNRKPKKGIEFLINAKKV--GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 323 (1415)
Q Consensus 246 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~--~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~ 323 (1415)
|++|+.+++|+.+||.+|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC--CCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHH
Q 000569 324 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFI 401 (1415)
Q Consensus 324 ~~~~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~--~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi 401 (1415)
|+++++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++||
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCcHHHHHHHHHHHhhccc
Q 000569 402 RNNRGIDDGKDLPEEYLRSLFERISRNEI 430 (1415)
Q Consensus 402 ~n~~~~~~~~~~~~~~L~~iY~~I~~~~i 430 (1415)
+|++|+++|+++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1e-50 Score=437.18 Aligned_cols=183 Identities=55% Similarity=0.947 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHcCCCC-CCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCC
Q 000569 248 YKLELQEGISLFNRKPKKGIEFLINAKKVG-NTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 326 (1415)
Q Consensus 248 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~~-~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~ 326 (1415)
+|..+.+|+.+||.+|++||+||++.|+++ ++|++||+||+++++|||++||+|||+++++|.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 477899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC--CccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhh
Q 000569 327 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT--SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNN 404 (1415)
Q Consensus 327 ~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~~f~--~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~ 404 (1415)
|++|||.||..|+||||+|+|||||+.||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhhccc
Q 000569 405 RGIDDGKDLPEEYLRSLFERISRNEI 430 (1415)
Q Consensus 405 ~~~~~~~~~~~~~L~~iY~~I~~~~i 430 (1415)
+|+++|.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 9
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-50 Score=451.25 Aligned_cols=194 Identities=45% Similarity=0.838 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHcCCCCCCHHHHHHHHHcCCCCChhHHHhhhcCC-CchhHHHHHHHHhcCCCCCCC
Q 000569 248 YKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGER-EELPLKVMHAYVDSFDFQRME 326 (1415)
Q Consensus 248 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~-~~~~~~vl~~y~~~~df~~~~ 326 (1415)
+|+...-|..+||.||.|||+||++.||++++|..||+||.+..||+|+|||||||.+ ++||.+||+++++.+||++|.
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssme 276 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSME 276 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccch
Confidence 4666777999999999999999999999999999999999999999999999999985 689999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC---CCCCccHHHHHHHHHHHhhhccCCCccC--CCCCHHhHH
Q 000569 327 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK---VFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADDFI 401 (1415)
Q Consensus 327 ~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~~~n~~---~f~~~d~~y~l~ysiimLntdlhn~~~k--~kmt~~~Fi 401 (1415)
+|+|||+|...||+|||||||||++|+||.|||.|||. -|.|.|++|+|||+|||||||+|+|+|| +||+++|||
T Consensus 277 lDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFi 356 (627)
T KOG0931|consen 277 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFI 356 (627)
T ss_pred HHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHH
Confidence 99999999999999999999999999999999999998 4999999999999999999999999999 899999999
Q ss_pred HhhccCCCCCCCcHHHHHHHHHHHhhccccccCcchhHHh
Q 000569 402 RNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQ 441 (1415)
Q Consensus 402 ~n~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~ 441 (1415)
||.||+++|+|+|++.|.+||++|+++|++..+||....+
T Consensus 357 kNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVq 396 (627)
T KOG0931|consen 357 KNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQ 396 (627)
T ss_pred HhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHH
Confidence 9999999999999999999999999999999999976544
No 10
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-39 Score=376.52 Aligned_cols=960 Identities=17% Similarity=0.229 Sum_probs=602.5
Q ss_pred hHHHhhhcCCC----chhHHHHHHHHhcCCCCCCChHHHHHHHhccCC--CCC-----chHHHHHHHHHHHHHHhhh---
Q 000569 296 TLIGDYLGERE----ELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFR--LPG-----EAQKIDRIMEKFAERYCKC--- 361 (1415)
Q Consensus 296 ~~igeylg~~~----~~~~~vl~~y~~~~df~~~~~~~aLR~~l~~f~--Lpg-----E~q~idri~e~Fa~~y~~~--- 361 (1415)
.|+-+-||+.. ...++.++.-|.+.|= ++= -+-|.|++..- +|. =+-..|.++..||-++|+.
T Consensus 347 rmlmdCiaecslpqaaLSidalKnivamlde--adQ-hSahkFfqdlEgllpkLiadsfscedDTalnnFalkccegvsd 423 (1777)
T KOG1846|consen 347 RMLMDCIAECSLPQAALSIDALKNIVAMLDE--ADQ-HSAHKFFQDLEGLLPKLIADSFSCEDDTALNNFALKCCEGVSD 423 (1777)
T ss_pred HHHHHHHHhccCchHHhhHHHHHHHHHHHhh--HHH-HHHHHHHHhhhhhHHHHHhhccchhhHHHHHHHHHHHhcCccc
Confidence 35555666543 2344555554443321 111 12355655543 432 3567899999999999985
Q ss_pred --CCC----------CCCCccHHHHHHHHHHHhhh-c-cCCCcc----C----CCCCHHhHHHhhccCCCCCCCcHHHHH
Q 000569 362 --NPK----------VFTSADTAYVLAYSVILLNT-D-SHNPMV----K----NKMSADDFIRNNRGIDDGKDLPEEYLR 419 (1415)
Q Consensus 362 --n~~----------~f~~~d~~y~l~ysiimLnt-d-lhn~~~----k----~kmt~~~Fi~n~~~~~~~~~~~~~~L~ 419 (1415)
.|+ ...|||.-|..|---.++|. . .|..-- | .+=|.++|++....-.-.--+.+.+.+
T Consensus 424 icspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKdFmkalqeSgldiiaapanie 503 (1777)
T KOG1846|consen 424 ICSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKDFMKALQESGLDIIAAPANIE 503 (1777)
T ss_pred ccCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHHHHHHHHhcCceeeeccccHH
Confidence 343 24588999998888888872 2 232221 1 256789999987543322446778899
Q ss_pred HHHHHHhhccccccC-------cchhHHhhhhcccccccccchhhhHHHhhhhhhhhhhhhHHHHH----HHHHHHHHhh
Q 000569 420 SLFERISRNEIKMKG-------DDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIR----HMQEQFKEKA 488 (1415)
Q Consensus 420 ~iY~~I~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 488 (1415)
+||+.|........+ +...+..+. +...+|....- +.++ .+..++. ..-+.++++.
T Consensus 504 eideaiLdfnmlfeagfcgshaDaskpliki---------lqdflntdagl--esaa--aggcliahaaTeslealkkri 570 (1777)
T KOG1846|consen 504 EIDEAILDFNMLFEAGFCGSHADASKPLIKI---------LQDFLNTDAGL--ESAA--AGGCLIAHAATESLEALKKRI 570 (1777)
T ss_pred HHHHHHHhhhhccccccccCchhccccHHHH---------HHHhhhhhHHH--HHHh--hcceeeccccccCHHHHhhhc
Confidence 999999987654322 111111110 00011110000 0000 0011110 0111122222
Q ss_pred ccCCCceEEechhHHHHHHHHHhHHHHHHHhhchhcc---------------------------CChHHHHHHHHHHHHH
Q 000569 489 RKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQ---------------------------SDDEVIIALCLQGFRY 541 (1415)
Q Consensus 489 ~~~~~~f~~~~~~e~~r~Mfe~~W~~ilaalS~~l~~---------------------------s~d~~~i~~~L~g~~~ 541 (1415)
..++ .+.++.+.+...--+|..+..+++.++-. ...++....-.+|+++
T Consensus 571 ddSg----cVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqddaeCmeedglak 646 (1777)
T KOG1846|consen 571 DDSG----CVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQDDAECMEEDGLAK 646 (1777)
T ss_pred cccc----ceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhcchhhhchhhHHH
Confidence 1111 13345555555556788887777766211 1123456677899999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhccCCC---------CCc-----------------------cccchHHHHHHHHHHH
Q 000569 542 AIRVTAVMSMKTHRDAFVTSLAKFTSLHS---------PAD-----------------------IKQKNIDAIKAIVTIA 589 (1415)
Q Consensus 542 ~i~Ia~~~~l~~~rDafl~sL~kfT~L~~---------~~~-----------------------l~~Kni~alraLl~la 589 (1415)
+++++|..|....++..++.|+-...-.. |.. ...-++.|..+.|...
T Consensus 647 aarlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehlaetlCceadLrdd 726 (1777)
T KOG1846|consen 647 AARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAETLCCEADLRDD 726 (1777)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhch
Confidence 99999999999999988888876643221 100 1234567888889999
Q ss_pred HhcCchhhhchHHHHHHHHHHHHHHHhc--CCCCCCCcccc--CCCc-chhhhhc--cccccccc-cc--cCC-------
Q 000569 590 DEDGNYLQEAWEHILTCVSRFEHLHLLG--EGAPPDATFFA--FPQS-ESEKSKQ--AKSTILPV-LK--KKG------- 652 (1415)
Q Consensus 590 ~~~G~~L~~sW~~IL~~isqle~lqli~--~g~~~d~~~~~--~p~~-~~~~~~~--~~~~~~p~-~~--~~~------- 652 (1415)
...|.+-.++|+++.+....+-.++..- .|....+.... +|.. +.+.+.- ..-...|+ ++ |++
T Consensus 727 aeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehkferqgredkead 806 (1777)
T KOG1846|consen 727 AEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHKFERQGREDKEAD 806 (1777)
T ss_pred hhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccChhhcCccccccc
Confidence 9999999999999998765444444321 11100000000 0000 0000000 00000000 00 000
Q ss_pred ---CCchhhhHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHh-cccCChHHHHHHHHHHHH
Q 000569 653 ---PGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTR-SQKLNSEAIIDFVKALCK 728 (1415)
Q Consensus 653 ---~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~l~~i~s~~id~lF~~-S~~L~~eal~~fv~ALc~ 728 (1415)
+............|. .++-.|++- ++-...+ .++ +..+..+||+|+. +..|..-|+.+|.-|+.+
T Consensus 807 keeklsaaDlsiEgalGd-apdfrggsl---mSghSaa------kai-ctLiakaDRffedacdeLcLmALgdfcvaiik 875 (1777)
T KOG1846|consen 807 KEEKLSAADLSIEGALGD-APDFRGGSL---MSGHSAA------KAI-CTLIAKADRFFEDACDELCLMALGDFCVAIIK 875 (1777)
T ss_pred ccccccHHhhhhccccCC-Ccccccccc---cccchHH------HHH-HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 000000000000010 001111111 1111111 111 2224578999998 688999999999999999
Q ss_pred hhHHhhhcC---------CCC--------c--eehHHHHHHHH-h--hccccccccchhhHHHHHHHHHhh-cCCCCHHH
Q 000569 729 VSMEELRSA---------SDP--------R--VFSLTKIVEIA-H--YNMNRIRLVWSSIWHVLSDFFVNI-GCSENLSI 785 (1415)
Q Consensus 729 vS~eel~~~---------~~p--------r--~F~L~kLveVa-~--~Nm~Ri~~~W~~iW~~L~~~f~~v-~~~~n~~v 785 (1415)
.|...+..+ .-| | ...|.||.+.. . ...-|+.++-+.+|..+.+||+++ +||....|
T Consensus 876 aSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhv 955 (1777)
T KOG1846|consen 876 ASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHV 955 (1777)
T ss_pred hhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHH
Confidence 998877542 012 2 46788888732 2 233499999999999999999999 89998899
Q ss_pred HHHHHHHHHHHHHHhhc-hhhhhhhhhhhhhhhhHHHHHhh-cchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHH
Q 000569 786 AIFAMDSLRQLSMKFLE-REELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTT 863 (1415)
Q Consensus 786 ~~~AvdsLrqLa~kfLe-~eEl~~~~fQ~~fL~Pfe~im~~-s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~ 863 (1415)
+..|+..+..+.+++|. ..|-++|+|.+.++.||+.+|+. +|+.|++++++..+.++|+.++..|.||||++|+.|.+
T Consensus 956 SqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLea 1035 (1777)
T KOG1846|consen 956 SQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEA 1035 (1777)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 99999999999888874 68899999999999999999986 68999999999999999999999999999999999999
Q ss_pred hhcCChhH----HH---------HHHHHHHHHH-HhhccCcccccccccHHHHHHHHHHHHhCCC---------------
Q 000569 864 AAYDDHKN----IV---------LLAFEIIEKI-IRDYFPYITETETTTFTDCVNCLIAFTNSRF--------------- 914 (1415)
Q Consensus 864 aa~~~~~~----lV---------~~aF~~l~~I-~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~--------------- 914 (1415)
+...+..+ ++ .-+|++++-. ..|..+.+ .++...||.|+.+|.++-.
T Consensus 1036 VgggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleevDckeigdcapapg 1111 (1777)
T KOG1846|consen 1036 VGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPG 1111 (1777)
T ss_pred hcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhcccccccchhcccCCCCC
Confidence 88543221 22 2578888743 34554444 5788999999999987654
Q ss_pred --CccccHHHHHHHHHHHHhhhcccccccCC-----CchhhhcccCCCCCCCcchhhhh---cc----cccCCcchhhhh
Q 000569 915 --NKDISLNAIAFLRFCATKLAEGDLSASSS-----NKDKEISAKIPPASPRPVKELKL---EN----GEMIDKDDHLYF 980 (1415)
Q Consensus 915 --d~niSL~AI~~L~~~~~~l~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~---~~----~~~~~~~~~~~l 980 (1415)
..+++|.|+.+|++|..-++.-+- .+.+ ........+..+.+.... ++.+ .+ ..+.+...-..+
T Consensus 1112 apstdKOGaALdlLpncsqLiakiYk-mPhkPifhlghladLprkcldqsamde-DgIEsphgpfpvledfdddiagiEl 1189 (1777)
T KOG1846|consen 1112 APSTDLCLAALDLLPNCSQLIAKIYK-MPHKPIFHLGHLADLPRKCLDQSAMDE-DGIESPHGPFPVLEDFDDDIAGIEL 1189 (1777)
T ss_pred CCcchhhHHHHHHHHhHHHHHHHHHc-CCCchhhhhhhhhcchHHHHhhhhccc-CCccCCCCCccccccccccchhHHH
Confidence 136789999999999886654321 1100 000000000000000000 0000 00 112222345789
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCC
Q 000569 981 WFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHL-FSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 1059 (1415)
Q Consensus 981 W~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~-f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~ 1059 (1415)
|+.+|..+.....++.+.-+..-+..+|+.|..-... +++.+--.+...+|+|.++.|..+.
T Consensus 1190 fiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl----------------- 1252 (1777)
T KOG1846|consen 1190 FIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL----------------- 1252 (1777)
T ss_pred HHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh-----------------
Confidence 9999999999888888899999999999999987644 4778888889999999999998753
Q ss_pred cchhhhHHHH--HHHHHHHHHHHHHHHHHH-------------hHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHH
Q 000569 1060 ELDQDAWLYE--TCTLALQLVVDLFVKFYN-------------TVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1124 (1415)
Q Consensus 1060 ~~~~~~W~~e--T~~~aL~~lv~Lf~~yf~-------------~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~ 1124 (1415)
+.+...|+.. ...+|+..-+.+...+.+ .+..++.+.+.++..|...+.+.+.++|++|++..+.
T Consensus 1253 dkdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlv 1332 (1777)
T KOG1846|consen 1253 DKDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLV 1332 (1777)
T ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeee
Confidence 3455778633 456777777766665542 3445788889999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhhcchhhhccCc----ch-----hhhh----hhcccc---c-------------cCC
Q 000569 1125 NAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSE----DC-----MAEI----AAKGQI---N-------------VES 1175 (1415)
Q Consensus 1125 ~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~----~~-----~~~~----~~~~~~---~-------------~~~ 1175 (1415)
..|++|++++|+..+.++.++|.+|+.+..+++.. .. ++++ |...+. . ...
T Consensus 1333 tagpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerqlIaAmaqlsfmkdk 1412 (1777)
T KOG1846|consen 1333 TAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQLIAAMAQLSFMKDK 1412 (1777)
T ss_pred ccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987666531 11 1111 110000 0 001
Q ss_pred CCCCCCCC---------------Cchhhhh---h--hhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 000569 1176 SGSGLPDD---------------DSENLRT---Q--HLFACIADAKCRAAVQLLLIQAVMEIYN---------------- 1219 (1415)
Q Consensus 1176 ~~~~~~~~---------------~~~~~~~---~--~~~~~~~~~~~kcv~qLlliq~~~~l~~---------------- 1219 (1415)
+..+..+. ..+++|- . .++.+++...+||++ +|.+.+|+-
T Consensus 1413 qcgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHclL----LQliadiLLeEdskgPklgaekigq 1488 (1777)
T KOG1846|consen 1413 QCGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCLL----LQLIADILLEEDSKGPKLGAEKIGQ 1488 (1777)
T ss_pred ccCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCCcccccc
Confidence 11111110 1122221 1 244467888899865 455555541
Q ss_pred -------hhccCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHhhHHHHHHHHHHHhcC
Q 000569 1220 -------MYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILD 1292 (1415)
Q Consensus 1220 -------~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d 1292 (1415)
.|.++|+.+.+..|.++|.+|++-|.+|++.+.|...|.|+-.+-+. .|||||-..++..|.+.|-....-
T Consensus 1489 tpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigga--ANLlkasalsfnilfhalscavLl 1566 (1777)
T KOG1846|consen 1489 TPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGGA--ANLLKASALSFNILFHALSCAVLL 1566 (1777)
T ss_pred CCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999999999999998766555 999999999999999988876664
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHH
Q 000569 1293 RPPTYEEADVESHLVNLCQEVLQ 1315 (1415)
Q Consensus 1293 ~~~~~~~~~i~~~L~~lc~~il~ 1315 (1415)
+...-...++...|.+=-....+
T Consensus 1567 nqeeiTaeqvkkeLfeddakatd 1589 (1777)
T KOG1846|consen 1567 NQEEITAEQVKKELFEDDAKATD 1589 (1777)
T ss_pred hHHHHHHHHHhhhhchhhhhhhc
Confidence 44332334444455544333333
No 11
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-40 Score=411.62 Aligned_cols=540 Identities=18% Similarity=0.222 Sum_probs=381.2
Q ss_pred EechhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCC------
Q 000569 497 AATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHS------ 570 (1415)
Q Consensus 497 ~~~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~~~~l~~~rDafl~sL~kfT~L~~------ 570 (1415)
.....+..+.|....|..++.+++..+.++.|+.+..+.+.++...+..+|..+-+++..+++..||+|+....
T Consensus 518 ~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~l 597 (1610)
T KOG1848|consen 518 RQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRL 597 (1610)
T ss_pred cceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999974320
Q ss_pred -----------------------------------------------CCccccchHHHHHHHHHHHHhcCchhhhchHHH
Q 000569 571 -----------------------------------------------PADIKQKNIDAIKAIVTIADEDGNYLQEAWEHI 603 (1415)
Q Consensus 571 -----------------------------------------------~~~l~~Kni~alraLl~la~~~G~~L~~sW~~I 603 (1415)
+..++.||+.|+|+.++++..+-+.++.+|.++
T Consensus 598 r~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~ll 677 (1610)
T KOG1848|consen 598 RCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLL 677 (1610)
T ss_pred hhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 112457999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhHhhhccCCccCCCCCCCCCCCCCH
Q 000569 604 LTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTS 683 (1415)
Q Consensus 604 L~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~ 683 (1415)
+.+.+.+.+.-- . .|... ++ ... +..+.++..++.
T Consensus 678 m~t~~~ls~~~~-----------m-~p~qt--------------------~l------~v~-------t~~~~hp~~p~~ 712 (1610)
T KOG1848|consen 678 MYTTSSLSQPAY-----------M-EPLQT--------------------LL------AVI-------TSSSVHPIQPLT 712 (1610)
T ss_pred HHHHHHhcchhh-----------c-CHHHh--------------------hH------HHH-------hcCCCCCCCcch
Confidence 988654432110 0 01000 00 000 000111112211
Q ss_pred HHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCC-----CCce--ehHHHHHHHHhhcc
Q 000569 684 EQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSAS-----DPRV--FSLTKIVEIAHYNM 756 (1415)
Q Consensus 684 ~ei~~~~~~~~~l~~i~s~~id~lF~~S~~L~~eal~~fv~ALc~vS~eel~~~~-----~pr~--F~L~kLveVa~~Nm 756 (1415)
+-. ...+..-++.. -.+++|.+++.++..+....++||.+++.+-+...+ .-|. +.++-.+-.+..|-
T Consensus 713 ~~~-~~ynd~~~lss----l~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e 787 (1610)
T KOG1848|consen 713 APR-QSYNDDLLLSS----LKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKE 787 (1610)
T ss_pred hhH-HHHHHHHHHHH----HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHH
Confidence 111 11122223332 348999999999999999999999999987553211 1111 22222222222222
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh-------hhhhhhHHHHHhhcchH
Q 000569 757 NRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ-------NEFMKPFVIVMRKSNAV 829 (1415)
Q Consensus 757 ~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ-------~~fL~Pfe~im~~s~~~ 829 (1415)
-|-.. -|....+||.+.+||--.++... +++.++. + .-.+.+.+| ..++...+.....++..
T Consensus 788 ~snq~----~~~naa~~l~t~~n~vl~s~~~~-~asals~-----d-a~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~ 856 (1610)
T KOG1848|consen 788 LSNQF----KIINAAPELRTRANNVLASILVD-VASALSN-----D-ASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGV 856 (1610)
T ss_pred hhhHH----HHHHhHHHHHHHHHHHHHHHHhh-hhhhhhc-----c-cccchhccceeeHhhhHHHHHHHHHHHhcCccc
Confidence 22221 23334444444444321111111 1111110 0 001112233 34444445445557788
Q ss_pred HHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 000569 830 EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYD---DHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL 906 (1415)
Q Consensus 830 eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~---~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL 906 (1415)
|+|---++|+-+++++.|+.+-+||..||++|+.++.. .+.++|++||+++++|++||++++| .+|+.+||+++
T Consensus 857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lidtl 933 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLIDTL 933 (1610)
T ss_pred eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHHHH
Confidence 99999999999999999999999999999999977643 3788999999999999999999999 79999999999
Q ss_pred HHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhhhhHHHHHH
Q 000569 907 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLA 986 (1415)
Q Consensus 907 ~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~ 986 (1415)
..|++|+.|+||||+||++||.++|.+........+. ......+. .+.+ ....+..-++.+|+.||.
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed---~~~~~~~e--------~~~s--s~~~~~~l~e~lwi~ll~ 1000 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSED---SCAYNSVE--------DLYS--SMKSKEILPEVLWIMLLV 1000 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchh---hhhhcchh--------hhcc--cccchhhhhhHHHHHHHH
Confidence 9999999999999999999999999987522211110 00000000 0000 000111235799999999
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhH
Q 000569 987 GLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAW 1066 (1415)
Q Consensus 987 ~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W 1066 (1415)
.|+++|.|+|+||||+|.||||||+.+||+.|++..|+.|||.|++|+++....... +. -++.+.+++|
T Consensus 1001 ~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~----~e-------wngkeiqkqw 1069 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNV----SE-------WNGKEIQKQW 1069 (1610)
T ss_pred HHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccch----hh-------hcchhHhhhh
Confidence 999999999999999999999999999999999999999999999999998765321 11 1234556999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhH------HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHh
Q 000569 1067 LYETCTLALQLVVDLFVKFYNTVNP------LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1125 (1415)
Q Consensus 1067 ~~eT~~~aL~~lv~Lf~~yf~~l~~------~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~ 1125 (1415)
. ||++++++|+++||..||..+.. -|..++.+|.+.++..+..++-.++.|+|.++.+
T Consensus 1070 t-et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1070 T-ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred h-hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 8 99999999999999999988763 4667777777777778888899999999999874
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-28 Score=281.18 Aligned_cols=154 Identities=34% Similarity=0.631 Sum_probs=149.5
Q ss_pred HHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHh
Q 000569 280 PEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYC 359 (1415)
Q Consensus 280 p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~~l~~f~LpgE~q~idri~e~Fa~~y~ 359 (1415)
...+|+=|++..|.-|..|..+||++++|..-|..+|+..|+|.||++|.|||.||..|-|-||.|.-+||+-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhccCCCCCCCcHHHHHHHHHHHhhcccccc
Q 000569 360 KCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMK 433 (1415)
Q Consensus 360 ~~n~~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~ 433 (1415)
+|||+.|.+.|.+++|+.+||+||||||.+||-+|||.+|||-|..|+|+|.|||.|+|..+|++|+++.+...
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewA 460 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWA 460 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977654
No 13
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.91 E-value=1.1e-24 Score=232.41 Aligned_cols=126 Identities=40% Similarity=0.654 Sum_probs=117.7
Q ss_pred cccchhhhhhhc------ccccccc---CCHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000569 7 FNSFWGRFAGSL------VEGWLIA---LTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIG 77 (1415)
Q Consensus 7 ~~~~~~~~~~~~------~~g~~~~---~~~~~~~~ik~~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eie 77 (1415)
.++....||+-| .+|+.|. .++.|+++||++||.+|++|+.++.++||+.+++||++|+.+||++||.|+|
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788877 9999999 5559999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhHH
Q 000569 78 VFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIF 133 (1415)
Q Consensus 78 vf~~~i~l~ile~~~~~~~~~k~~~l~~l~~l~~~p~~~velyvNYDCd~~~~ni~ 133 (1415)
+||+.|+++++++++ +++.||+++||++.++|++|++++|+|+|||||.+++|||
T Consensus 114 ~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDCd~~~~nif 168 (168)
T PF12783_consen 114 VFLSHIILRILESDN-SSLWQKELALEILRELCKDPQFLVDLFVNYDCDLNSKNIF 168 (168)
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHhChhHHHHHHHHcCCCCCCCCCC
Confidence 999999999999884 5789999999999999999999999999999999999986
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.84 E-value=8.6e-22 Score=184.93 Aligned_cols=86 Identities=48% Similarity=0.925 Sum_probs=83.9
Q ss_pred HHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHH
Q 000569 798 MKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAF 877 (1415)
Q Consensus 798 ~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF 877 (1415)
||||+++|+++|+||++||+||+.||.++++.+||+++|+|+.+|+++++++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000569 878 EIIEKI 883 (1415)
Q Consensus 878 ~~l~~I 883 (1415)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.73 Score=57.36 Aligned_cols=319 Identities=18% Similarity=0.294 Sum_probs=171.0
Q ss_pred cchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhh-hhHHHH------HhhcchHHHHHH
Q 000569 762 VWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFM-KPFVIV------MRKSNAVEIREL 834 (1415)
Q Consensus 762 ~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL-~Pfe~i------m~~s~~~eire~ 834 (1415)
.|+.+-..|.+.+ -+++...-.-|+++|..++ |+-++ .++.+++ +|+..+ +-.++++.||-.
T Consensus 125 ~wpelLp~L~~~L----~s~d~n~~EgA~~AL~KIc------EDsa~-~lds~~~~rpl~~mipkfl~f~~h~spkiRs~ 193 (885)
T KOG2023|consen 125 HWPELLPQLCELL----DSPDYNTCEGAFGALQKIC------EDSAQ-FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSH 193 (885)
T ss_pred cchhHHHHHHHHh----cCCcccccchhHHHHHHHH------hhhHH-HHhhhcccCchHHhHHHHHHHHhCCChhHHHH
Confidence 4555444444444 3444344444667776665 22222 2333322 233222 234568999999
Q ss_pred HHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCC
Q 000569 835 IIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRF 914 (1415)
Q Consensus 835 vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~ 914 (1415)
.+.|+.++|-.+.+.+--.=..-++.+-+-|.|+++++=+.....+-.+..-..+.+. ......|.-.. ...|..
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~----phl~~IveyML-~~tqd~ 268 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV----PHLDNIVEYML-QRTQDV 268 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc----cchHHHHHHHH-HHccCc
Confidence 9999999987777655545555566666667888887777666666655543333332 12222232221 246778
Q ss_pred CccccHHHHHHHHHHHH-----------------hhhcccccccCCCc----hhhhcccCCCCC----CCcchh---hhh
Q 000569 915 NKDISLNAIAFLRFCAT-----------------KLAEGDLSASSSNK----DKEISAKIPPAS----PRPVKE---LKL 966 (1415)
Q Consensus 915 d~niSL~AI~~L~~~~~-----------------~l~~~~~~~~~~~~----~~~~~~~i~~~~----~~~~~~---~~~ 966 (1415)
|.+++|.|-++.-..+. -+..| ....+.+. +.+-...+++.+ |.-.++ +..
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~-M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG-MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc-CccccccHHHhcCccccccCCchhhhccchhhhchhccCc
Confidence 88999999887543221 11111 01000000 000000000000 000000 000
Q ss_pred c----cccc---CCcchhhhhHHHHHHHHhhhcCCCcHHHHH---HHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHH
Q 000569 967 E----NGEM---IDKDDHLYFWFPLLAGLSELSFDPRPEIRK---SALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 1036 (1415)
Q Consensus 967 ~----~~~~---~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~---~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~ 1036 (1415)
+ +... .|+++...-| ..|+ .||.+|-.++. +.++. ++||++.
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dW----------------NLRkCSAAaLDVLanvf~-----------~elL~-~l~PlLk 399 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDW----------------NLRKCSAAALDVLANVFG-----------DELLP-ILLPLLK 399 (885)
T ss_pred cccccccccccccccccccccc----------------cHhhccHHHHHHHHHhhH-----------HHHHH-HHHHHHH
Confidence 0 0000 0111111122 2344 34555544332 23333 6788887
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHH----HhH----------------------
Q 000569 1037 YVRHTIDPSGENSPGQGVDGDTGELDQDAW-LYETCTLALQLVVDLFVKFY----NTV---------------------- 1089 (1415)
Q Consensus 1037 ~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W-~~eT~~~aL~~lv~Lf~~yf----~~l---------------------- 1089 (1415)
.... + ..| ..|..++|++.+.+=-.++| ..+
T Consensus 400 ~~L~-------------------~---~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWT 457 (885)
T KOG2023|consen 400 EHLS-------------------S---EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWT 457 (885)
T ss_pred HHcC-------------------c---chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeee
Confidence 6543 1 236 35888999988876544443 111
Q ss_pred -------------hHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 000569 1090 -------------NPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKA 1148 (1415)
Q Consensus 1090 -------------~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~i~~~l~~l~~~ 1148 (1415)
...+..++.=|..++-..|..+-+.+|+++-.|....|+.+ ...-..|++.|..+|..
T Consensus 458 LsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~k 528 (885)
T KOG2023|consen 458 LSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL-VPYLEYILDQLVFAFGK 528 (885)
T ss_pred HhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHH
Confidence 02456667777788888999999999999999999999999 66888888888877764
No 16
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.23 E-value=6 Score=56.51 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=98.3
Q ss_pred hhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHH-HhhhhhHHhhhhhcCCCCCCCCCCCC
Q 000569 976 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFD-SVLFPIFDYVRHTIDPSGENSPGQGV 1054 (1415)
Q Consensus 976 ~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~-~VLFPif~~l~~~~~~~~~~~~~~~~ 1054 (1415)
.|..+|-.+-.-+..+..++..+|+--|+..|=++-..+-.. .+.+..=|. ..|-|+-..+...
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s------------- 1194 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKS------------- 1194 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhc-------------
Confidence 477889878777888877766889999999876654433221 122222233 3455655444421
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCC---
Q 000569 1055 DGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFS--- 1131 (1415)
Q Consensus 1055 ~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~--- 1131 (1415)
... +-+-++++.+..+...+.+.+..=|+-++.+|..-....++.+.+.|-.+++.++...-+.+.
T Consensus 1195 ----~~~-------eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~ 1263 (1780)
T PLN03076 1195 ----NAV-------EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE 1263 (1780)
T ss_pred ----Cch-------HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 012 334457777777777788888888999999999888888999999999999987776444333
Q ss_pred HHHHHHHHHHHHHHHH
Q 000569 1132 DEKWLEVAESLKEAAK 1147 (1415)
Q Consensus 1132 ~~~W~~i~~~l~~l~~ 1147 (1415)
.+....+++++.+...
T Consensus 1264 ~~~F~DlV~cL~~Fa~ 1279 (1780)
T PLN03076 1264 TTTFTDCVNCLIAFTN 1279 (1780)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3566677777765443
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=27 Score=47.05 Aligned_cols=139 Identities=20% Similarity=0.251 Sum_probs=100.3
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCC
Q 000569 980 FWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 1059 (1415)
Q Consensus 980 lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~ 1059 (1415)
-|=-||.-|-...+++.+..|..|+-+|+.+....|..+.+.. ..+.|+|..-...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~------~~l~~lf~q~~~d------------------ 170 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL------DDLLRLFSQTMTD------------------ 170 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH------HHHHHHHHHhccC------------------
Confidence 4878899998999999999999999999999999999998642 2345666653321
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 000569 1060 ELDQDAWLYETCTLALQLVVDLF---VKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWL 1136 (1415)
Q Consensus 1060 ~~~~~~W~~eT~~~aL~~lv~Lf---~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~ 1136 (1415)
.... +.-+.++|+..++... +.-.+.+..+++.++..+..+++.+++.-|...-.+|-.|+...++-| ..+-.
T Consensus 171 -~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~ 246 (1075)
T KOG2171|consen 171 -PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLS 246 (1075)
T ss_pred -Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHH
Confidence 1111 3456666766666554 233445567899999999999999999888888888888888766666 55555
Q ss_pred HHHHHHHHHH
Q 000569 1137 EVAESLKEAA 1146 (1415)
Q Consensus 1137 ~i~~~l~~l~ 1146 (1415)
.|+..-..++
T Consensus 247 ~ii~~~l~Ia 256 (1075)
T KOG2171|consen 247 QIIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHHh
Confidence 5555444433
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.60 E-value=1.3e+02 Score=40.18 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=93.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 000569 993 FDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCT 1072 (1415)
Q Consensus 993 ~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~ 1072 (1415)
+|.+.|||-+||..+=.++..+|+.++.+ ...+|--+.+.+++ | -|+.
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~e-----L~~~L~il~eRl~n---------------------E------iTRl 627 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNE-----LPRTLPILLERLGN---------------------E------ITRL 627 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHHhc---------------------h------hHHH
Confidence 68899999999999999999999766543 22233223344432 1 4666
Q ss_pred HHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 000569 1073 LALQLVVDLFVKFYN-TVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAK 1147 (1415)
Q Consensus 1073 ~aL~~lv~Lf~~yf~-~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~i~~~l~~l~~ 1147 (1415)
-|.+.++.++..=.+ .+.+.+.+++..+.+|.++.+..+.--...++..|+...+..+..+.-+.++..+-.+..
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS 703 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh
Confidence 777888887776544 356789999999999999999999888899999999999999987777776665554443
No 19
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=1.6e+02 Score=40.31 Aligned_cols=259 Identities=17% Similarity=0.235 Sum_probs=144.2
Q ss_pred hhhhHHHHHhhcchHHHHHHHHHHHHHHHHcccccc---ccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcc
Q 000569 815 FMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV---KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYI 891 (1415)
Q Consensus 815 fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I---~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l 891 (1415)
.|.|+.. ..+.+..|...++.|+..++.+.+..- .+--..+|+++..++. ..|.+=..|-+.+..|..+--- -
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~~-~ 172 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPPF-A 172 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCCC-C
Confidence 4556655 234567788899999999998854322 2223455677766664 4666777788888888764211 1
Q ss_pred cccc-ccc---HHHHHHHHHHHHhCCCCcccc-HHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhh
Q 000569 892 TETE-TTT---FTDCVNCLIAFTNSRFNKDIS-LNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKL 966 (1415)
Q Consensus 892 ~~~~-~~~---f~dlI~cL~~F~~q~~d~niS-L~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 966 (1415)
|..+ +.. ...|+.-+..+... ..++. +..+.+|+ +-+.
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~~--a~~t~v~~~L~Ll~---~~~~-------------------------------- 215 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLGS--AENTTVLRSLMLLR---DVLS-------------------------------- 215 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHH---Hhhc--------------------------------
Confidence 1000 111 12222222222220 00110 11122221 1000
Q ss_pred cccccCCcchhhhhH-HHHHHHHhh----hcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhh
Q 000569 967 ENGEMIDKDDHLYFW-FPLLAGLSE----LSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHT 1041 (1415)
Q Consensus 967 ~~~~~~~~~~~~~lW-~pLL~~L~~----l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~ 1041 (1415)
. | .++...+.+ ++.-....|+..++|+|-+.+..+...++.+.-..++ ..+..
T Consensus 216 ------------~-~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL--------~al~~- 273 (1176)
T KOG1248|consen 216 ------------T-FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLL--------TALMT- 273 (1176)
T ss_pred ------------c-CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH--------HHHHH-
Confidence 0 1 234444444 3445678999999999999999998877665433322 22221
Q ss_pred cCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 000569 1042 IDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVR 1121 (1415)
Q Consensus 1042 ~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~ 1121 (1415)
..++.. +..-...|+ .-++-| ...+-+..-+.--..+++++.++..|...+++.+.....+|+..
T Consensus 274 l~ps~~-----------D~~~t~~W~-~v~~~~---~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~ 338 (1176)
T KOG1248|consen 274 LSPSEN-----------DDLLTVAWL-KVLNEA---HDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKE 338 (1176)
T ss_pred hCCCcc-----------chHHHHHHH-HHHHHH---HHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 112111 123346786 222222 22222223333334577888888888888888888888888888
Q ss_pred HHHhcCC----------------CCCHHHHHHHHHHHHHHHHhhcch
Q 000569 1122 LMSNAGN----------------LFSDEKWLEVAESLKEAAKATLPD 1152 (1415)
Q Consensus 1122 li~~~g~----------------~f~~~~W~~i~~~l~~l~~~t~~~ 1152 (1415)
++..... +| ...|..++..+..+|+..=+.
T Consensus 339 il~~sv~~~~~~c~~~~~~~l~~kf-~~~~~~ilqi~s~~fek~G~~ 384 (1176)
T KOG1248|consen 339 ILKESVTVIDALCSKQLHSLLDYKF-HAVWRFILQILSALFEKCGEL 384 (1176)
T ss_pred HhcccCcccHHHHHHHHHHHHcchH-HHHHHHHHHHHHHHHHHhhhh
Confidence 8775544 45 567999998888888876553
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=1.1e+02 Score=39.81 Aligned_cols=179 Identities=15% Similarity=0.241 Sum_probs=114.4
Q ss_pred ChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCc---cccHHHHHHHHHHHHhhhcccccccCCC
Q 000569 868 DHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK---DISLNAIAFLRFCATKLAEGDLSASSSN 944 (1415)
Q Consensus 868 ~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~---niSL~AI~~L~~~~~~l~~~~~~~~~~~ 944 (1415)
..+..-..|=+++..|..=- || .+...++|..|..-+.+.... .-+|.||+|+ |-+ +.
T Consensus 102 ~ep~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyi--ce~-i~---------- 162 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYI--CED-ID---------- 162 (859)
T ss_pred CCCCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHH--Hcc-CC----------
Confidence 34555666777887776533 44 678999999998888766554 4567888776 211 10
Q ss_pred chhhhcccCCCCCCCcchhhhhcccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHH
Q 000569 945 KDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWE 1024 (1415)
Q Consensus 945 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~ 1024 (1415)
|.. .. +.....-+-+..|..+ ..+...||-.|+..|.+.|.--+..|..+.=.
T Consensus 163 -------------pev----------l~--~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 163 -------------PEV----------LE--QQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred -------------HHH----------HH--HHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 000 00 0011222222222211 34567899999999999999888888665433
Q ss_pred HHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHH
Q 000569 1025 RVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP-LLRKVLMLLVSF 1103 (1415)
Q Consensus 1025 ~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~-~l~~~l~lL~~~ 1103 (1415)
.++-+| +-..++ .+| .+-++-|++.++++..-||+.+.+ |...++.+-..-
T Consensus 216 n~iMqv-------vcEatq----------------~~d-----~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~a 267 (859)
T KOG1241|consen 216 NYIMQV-------VCEATQ----------------SPD-----EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAA 267 (859)
T ss_pred ceeeee-------eeeccc----------------CCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 211111 122 255688999999999999999987 555689999999
Q ss_pred HcccchhHHHHHHHHHH
Q 000569 1104 IKRPHQSLAGIGIAAFV 1120 (1415)
Q Consensus 1104 i~q~~e~la~ig~~~l~ 1120 (1415)
|..+||.+|--|++-|-
T Consensus 268 mks~~deValQaiEFWs 284 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWS 284 (859)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 99999999977776544
No 21
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=84.27 E-value=1.2e+02 Score=37.87 Aligned_cols=97 Identities=15% Similarity=0.339 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhhch-hhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHH
Q 000569 767 WHVLSDFFVNIGCSE-NLSIAIFAMDSLRQLSMKFLER-EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 844 (1415)
Q Consensus 767 W~~L~~~f~~v~~~~-n~~v~~~AvdsLrqLa~kfLe~-eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~ 844 (1415)
=++|...+..++.+| |+...-|..+++.-+ .|+... ..-.--.|...++-||..|+... -.|.-.-|.+-+.++++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345555666666655 677788888888754 344332 11111246677888899887643 23556667888999999
Q ss_pred ccc-cccccCcHHHHHHHHHhh
Q 000569 845 SRV-NNVKSGWKSMFMVFTTAA 865 (1415)
Q Consensus 845 ~~~-~~I~SGW~~IF~iL~~aa 865 (1415)
.+. ..+-.-...+|..|-...
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGG
T ss_pred cCCCCCCcHHHHHHHHHHcCcc
Confidence 887 555555666666665544
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.61 E-value=1.3e+02 Score=38.14 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHH
Q 000569 780 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 859 (1415)
Q Consensus 780 ~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~ 859 (1415)
+.+..|...|+..+-.+. ...+ .-..+..|+..++. +.+.++|-.+++++.++.......+. ....++.
T Consensus 242 s~~~~V~~e~~~~i~~l~----~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~ 310 (526)
T PF01602_consen 242 SSSPSVVYEAIRLIIKLS----PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF 310 (526)
T ss_dssp HHHHHHHHHHHHHHHHHS----SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH
T ss_pred ccccHHHHHHHHHHHHhh----cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhh
Confidence 556677776766554322 2221 23445667777665 77889999999999999888755566 4443333
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH
Q 000569 860 VFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 931 (1415)
Q Consensus 860 iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~ 931 (1415)
.+. .+++..+...+.+++..++++ .++...+..|.+|+....+.++.-.++..+..++.
T Consensus 311 ~l~---~~~d~~Ir~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 311 FLL---YDDDPSIRKKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHH---CSSSHHHHHHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred eec---CCCChhHHHHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 332 456788999999999887753 57788999999998655555666666666555544
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.54 E-value=1.7e+02 Score=36.99 Aligned_cols=429 Identities=15% Similarity=0.115 Sum_probs=214.3
Q ss_pred ceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHH
Q 000569 741 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 820 (1415)
Q Consensus 741 r~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe 820 (1415)
.-+.+.|++-++..... -..+...-.+.+.+.+--.|+|+.++-.|+..|-.+. -.|+. ..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~-----~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMA-----EPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchh-----hHHHHHHH
Confidence 35667777666543322 2234455566777777777889988888877776654 22322 23344445
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHH-HhhccCcccccccccH
Q 000569 821 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKI-IRDYFPYITETETTTF 899 (1415)
Q Consensus 821 ~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I-~~d~l~~l~~~~~~~f 899 (1415)
.++. ++++-||...+-|+.++.....+.+..+| +..+.....|+++.++..|...+..| ..+... ...+
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~------~~~~ 190 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSY------KSLI 190 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHH------TTHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHccCcchh------hhhH
Confidence 4443 56779999999999999998877776554 56666666788888988898888877 222210 0123
Q ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhhh
Q 000569 900 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLY 979 (1415)
Q Consensus 900 ~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1415)
..++..|...... .++-.....+.+|...+..-....-. .. --......+.+..+...-+ ....+..-.....
T Consensus 191 ~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~--~~-~i~~l~~~l~s~~~~V~~e---~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 191 PKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK--NR-IIEPLLNLLQSSSPSVVYE---AIRLIIKLSPSPE 263 (526)
T ss_dssp HHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH--HH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHSSSHH
T ss_pred HHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH--HH-HHHHHHHHhhccccHHHHH---HHHHHHHhhcchH
Confidence 3333333333221 12223333333332111100000000 00 0000000000000000000 0000000001122
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCC
Q 000569 980 FWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 1059 (1415)
Q Consensus 980 lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~ 1059 (1415)
++-.+...|.++..+++++||--|+++|-.+...+ ...++ . ....+..+..
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------~~~v~-~-~~~~~~~l~~------------------- 314 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--------PPAVF-N-QSLILFFLLY------------------- 314 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------HHHHG-T-HHHHHHHHHC-------------------
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--------chhhh-h-hhhhhheecC-------------------
Confidence 66677777888878888899999999988888776 22222 1 1122223321
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 000569 1060 ELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGNLFSDEKWLEV 1138 (1415)
Q Consensus 1060 ~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~-~e~la~ig~~~l~~li~~~g~~f~~~~W~~i 1138 (1415)
+++ ......++..+..+-.. .-+..++.-|..++... ...+.+-.+.++..+.....+ ..+..
T Consensus 315 ~~d-----~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-----~~~~~ 378 (526)
T PF01602_consen 315 DDD-----PSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-----DAEWY 378 (526)
T ss_dssp SSS-----HHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-----SHHHH
T ss_pred CCC-----hhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-----hHHHH
Confidence 011 13345566655554321 12444666666777433 455777777777777666522 33445
Q ss_pred HHHHHHHHHhhcchhhhccCcchhhhhhhccccccCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000569 1139 AESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIY 1218 (1415)
Q Consensus 1139 ~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~qLlliq~~~~l~ 1218 (1415)
++.+.+++...-+.. .-..++.+.++.
T Consensus 379 v~~l~~ll~~~~~~~-----------------------------------------------------~~~~~~~i~~ll 405 (526)
T PF01602_consen 379 VDTLLKLLEISGDYV-----------------------------------------------------SNEIINVIRDLL 405 (526)
T ss_dssp HHHHHHHHHCTGGGC-----------------------------------------------------HCHHHHHHHHHH
T ss_pred HHHHHHhhhhccccc-----------------------------------------------------cchHHHHHHHHh
Confidence 555555554211000 001233333344
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHhhHHHHHHHHHHHhcCCCCCCc
Q 000569 1219 NMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTYE 1298 (1415)
Q Consensus 1219 ~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~~ 1298 (1415)
... ..+-..-+..|.+.+.+ .....-++..+|=.|--.+. .++ +....-+++.+...+.+.
T Consensus 406 ~~~-~~~~~~~l~~L~~~l~~-------~~~~~~~~~~~wilGEy~~~-~~~-----~~~~~~~~~~l~~~~~~~----- 466 (526)
T PF01602_consen 406 SNN-PELREKILKKLIELLED-------ISSPEALAAAIWILGEYGEL-IEN-----TESAPDILRSLIENFIEE----- 466 (526)
T ss_dssp HHS-TTTHHHHHHHHHHHHTS-------SSSHHHHHHHHHHHHHHCHH-HTT-----TTHHHHHHHHHHHHHTTS-----
T ss_pred hcC-hhhhHHHHHHHHHHHHH-------hhHHHHHHHHHhhhcccCCc-ccc-----cccHHHHHHHHHHhhccc-----
Confidence 332 22222234444444333 44555678888887743222 122 226777788888877653
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 000569 1299 EADVESHLVNLCQEVLQL 1316 (1415)
Q Consensus 1299 ~~~i~~~L~~lc~~il~~ 1316 (1415)
..++...++..+.++...
T Consensus 467 ~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 467 SPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 346666777766666644
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.09 E-value=56 Score=37.83 Aligned_cols=154 Identities=18% Similarity=0.333 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHcccccccc-CcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 000569 828 AVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL 906 (1415)
Q Consensus 828 ~~eire~vL~cl~~~i~~~~~~I~S-GW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL 906 (1415)
....|-.+.+-+..+++++...+++ |=.-|.+++..+..+++|+.+-.+|+.+..|+..|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 3467888888899898888777753 667788999999999999999999999999988763 22 2333444433
Q ss_pred HHH-----HhCCCCc-cccHHHHH-HHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhhh
Q 000569 907 IAF-----TNSRFNK-DISLNAIA-FLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLY 979 (1415)
Q Consensus 907 ~~F-----~~q~~d~-niSL~AI~-~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1415)
..| .-.+.|. .|+=.-+. -|+.| +...+....
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-----------------------------------------l~s~~~fa~ 207 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNC-----------------------------------------LSSTPLFAP 207 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHH-----------------------------------------hcCcHhhHH
Confidence 332 2122221 12211110 01111 111112234
Q ss_pred hHHHH-HHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhh
Q 000569 980 FWFPL-LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLF 1032 (1415)
Q Consensus 980 lW~pL-L~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLF 1032 (1415)
+=+|+ +..|.. + -+.|+.-+++||-.++..||..==.+.|..+++.+=+
T Consensus 208 ~~~p~LleKL~s---~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 208 FAFPLLLEKLDS---T-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHcC---C-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 45564 344432 2 3459999999999999999965445677777665443
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.34 E-value=1.1e+02 Score=34.00 Aligned_cols=190 Identities=12% Similarity=0.124 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh-hhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHH
Q 000569 780 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQ-NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 858 (1415)
Q Consensus 780 ~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ-~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF 858 (1415)
..+...+.-|++.|+.++..--..+....+.-. ++++.++...+.. ....|-...+.|+..+...-+..+..-=..++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 346778888999999887544111111111000 1222222221211 11223344556666665555554443333344
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccc
Q 000569 859 MVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 938 (1415)
Q Consensus 859 ~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~ 938 (1415)
..|-....+....+...|-.++..|+... + .-..++.-+...+.+.....+-..+..++..+......
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-~--------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~--- 164 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESC-S--------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS--- 164 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHC-C--------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc---
Confidence 44433445556778888999998887632 1 01223122223344444455666666666543321100
Q ss_pred cccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhhhhHH-HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC
Q 000569 939 SASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWF-PLLAGLSELSFDPRPEIRKSALQVLFETLRNHG 1015 (1415)
Q Consensus 939 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~-pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G 1015 (1415)
+...+ ....|+ .+...+.....|+.++||..|-+++......+|
T Consensus 165 ----------------------------~~~~l-----~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 165 ----------------------------DSSVL-----QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ------------------------------GGG-------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------hHhhh-----cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 00000 012234 367778888899999999999999888766554
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=75.91 E-value=1.2e+02 Score=33.79 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=97.0
Q ss_pred ehHHHHHHHHhhccccccccchhhHHHHH---HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhH
Q 000569 743 FSLTKIVEIAHYNMNRIRLVWSSIWHVLS---DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 819 (1415)
Q Consensus 743 F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~---~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pf 819 (1415)
=.|++|-.++..| ........+++.+. .-+.......+..|+..|+..+..++..+-.. +..+ -..++.++
T Consensus 26 ~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~--~~~~l~~L 99 (228)
T PF12348_consen 26 EALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY--ADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH--HHHHHHHH
Confidence 3466666666666 11222244455555 34444333445678888988888887443221 2111 23344444
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhcc---Cccccccc
Q 000569 820 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYF---PYITETET 896 (1415)
Q Consensus 820 e~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l---~~l~~~~~ 896 (1415)
..... ....-|++...+|+..|++... .+=+.++.++..+..++++.+-..+.+.+..++..+- +.+.. .
T Consensus 100 l~~~~-~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~--~ 172 (228)
T PF12348_consen 100 LKKLG-DSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK--S 172 (228)
T ss_dssp HHGGG----HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----H
T ss_pred HHHHc-cccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc--c
Confidence 33222 3456799999999999988665 1225668999998988898888888888888887764 22211 1
Q ss_pred ccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHh
Q 000569 897 TTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 932 (1415)
Q Consensus 897 ~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~ 932 (1415)
..+..++.++..+.... +.++--.|-..+|.....
T Consensus 173 ~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDA-DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHH
Confidence 23577888888876543 456666666666655443
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=74.73 E-value=3.1e+02 Score=36.88 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=84.5
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCC
Q 000569 980 FWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 1059 (1415)
Q Consensus 980 lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~ 1059 (1415)
+-..+|..+.....-+|..||++|+..|=.... +|..+ .+..++=-+++.+...
T Consensus 171 fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~-~~~~~-------ly~~li~~Ll~~L~~~------------------ 224 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQSPRLAVRKKAITALGHLAS-SCNRD-------LYVELIEHLLKGLSNR------------------ 224 (1233)
T ss_pred hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH-hcCHH-------HHHHHHHHHHhccCCC------------------
Confidence 444577777777788999999999987765444 44433 2333332223333221
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---cccchhHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 000569 1060 ELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFI---KRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWL 1136 (1415)
Q Consensus 1060 ~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i---~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~ 1136 (1415)
+... -. .|.++++..++.--.+-|. ..++.+.-++..+. ..+.|.+.+-+..+|+.|+..+-... -.+|.
T Consensus 225 -~q~~-~~-rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~~p 297 (1233)
T KOG1824|consen 225 -TQMS-AT-RTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPHVP 297 (1233)
T ss_pred -CchH-HH-HHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-cccch
Confidence 1111 12 7778888888875444443 34444444555555 66779999999999999999887777 56888
Q ss_pred HHHHHHHH
Q 000569 1137 EVAESLKE 1144 (1415)
Q Consensus 1137 ~i~~~l~~ 1144 (1415)
+++.-.-+
T Consensus 298 ei~~l~l~ 305 (1233)
T KOG1824|consen 298 EIINLCLS 305 (1233)
T ss_pred HHHHHHHH
Confidence 88775443
No 28
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=73.16 E-value=42 Score=35.54 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=75.1
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHH
Q 000569 990 ELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWL 1067 (1415)
Q Consensus 990 ~l~~d~R~eVR~~Al~tLF~iL~~~G--~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~ 1067 (1415)
......+.-=|+.|++-|-+++.... ..++...|..+|. -||-.+..=..........+. +...-...=+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~-------s~~~~~~~RL 82 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSA-------STATTAESRL 82 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCccc-------chHHHHHHHH
Confidence 33445667789999999999998765 8899999999998 566666554433211100000 0010011124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccc-hhHHHHHHHHHHHH
Q 000569 1068 YETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPH-QSLAGIGIAAFVRL 1122 (1415)
Q Consensus 1068 ~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~-e~la~ig~~~l~~l 1122 (1415)
+++.-+++.+++.....+.... +..+++.+...+..++ +-+.-+|..+.+-|
T Consensus 83 -~~~a~~lR~~ve~~~~~~k~kt--~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 83 -SSCASALRLFVEKSNSRLKRKT--VKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred -HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 6777888888877666554333 4556666677777766 55555666555444
No 29
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=4.7e+02 Score=36.81 Aligned_cols=257 Identities=18% Similarity=0.201 Sum_probs=136.2
Q ss_pred CCceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhch----------hhhhh
Q 000569 739 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLER----------EELAN 808 (1415)
Q Consensus 739 ~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~----------eEl~~ 808 (1415)
+-|+=+|+-++.|...--.-....|..|.+.+... ...+......+.+.+-++||-++..||.. +-+..
T Consensus 857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~-~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSA-TDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHH-hhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 35677788888777665555556688888888733 23333335678888999999888888752 34455
Q ss_pred hhhhhh----hhhhH---------HHH-HhhcchHHHHHHHHHHHHHHHHcccccc-cc-CcHHHHHHHHHhhcCChhHH
Q 000569 809 YNFQNE----FMKPF---------VIV-MRKSNAVEIRELIIRCVSQMVLSRVNNV-KS-GWKSMFMVFTTAAYDDHKNI 872 (1415)
Q Consensus 809 ~~fQ~~----fL~Pf---------e~i-m~~s~~~eire~vL~cl~~~i~~~~~~I-~S-GW~~IF~iL~~aa~~~~~~l 872 (1415)
|.=|+. -|... ... |..+.+..-..+.++-+.. .....-+ .- =|-.+|.-|.-.+.|...++
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 555542 11111 111 1111111111111111111 0000011 01 28888888888888877887
Q ss_pred HHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccC-CCchhhhcc
Q 000569 873 VLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASS-SNKDKEISA 951 (1415)
Q Consensus 873 V~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~-~~~~~~~~~ 951 (1415)
=+-|.+++=.|++-|-..++ ..+..+|+.- +...+.++.-.... ....++.+.
T Consensus 1014 RngAvqtlfri~~Shg~~l~---~~aW~s~~w~-----------------------vi~pLLd~~~~q~~~ewngkeiqk 1067 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLG---TNAWASCCWL-----------------------VIMPLLDSQPIQNVSEWNGKEIQK 1067 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCC---hhHHHHHHHH-----------------------HHHHHhccccccchhhhcchhHhh
Confidence 78899999999988877776 3444444322 11111111000000 000000000
Q ss_pred cCCCCCCCcchhhh----hcc-cccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC--CCCChhHHH
Q 000569 952 KIPPASPRPVKELK----LEN-GEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPLWE 1024 (1415)
Q Consensus 952 ~i~~~~~~~~~~~~----~~~-~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G--~~f~~~~W~ 1024 (1415)
+..+.+.. .-.|. .+. .-+...++..+.|--+|.=+-++..|..+|+..+||..++..+..+. +.+...+-.
T Consensus 1068 qwtet~~l-tisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~ 1146 (1610)
T KOG1848|consen 1068 QWTETSCL-TISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTL 1146 (1610)
T ss_pred hhhhhhhh-hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 00000000 00000 000 01122234568899999999999999999999999999999999774 445444433
Q ss_pred H
Q 000569 1025 R 1025 (1415)
Q Consensus 1025 ~ 1025 (1415)
.
T Consensus 1147 k 1147 (1610)
T KOG1848|consen 1147 K 1147 (1610)
T ss_pred H
Confidence 3
No 30
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.97 E-value=2.7e+02 Score=34.54 Aligned_cols=161 Identities=13% Similarity=0.162 Sum_probs=100.4
Q ss_pred hhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccC
Q 000569 810 NFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFP 889 (1415)
Q Consensus 810 ~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~ 889 (1415)
+|.+-++.-||. ...+.+.-+|.+.|+.|.+|+.+....+...=.....-+--|+.|.++++++.|=+..-.+...|++
T Consensus 326 ~f~~iL~~l~Ev-L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 326 HFAEILLLLLEV-LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 455555555665 5566778899999999999999999888765444444444456778888999998888777777643
Q ss_pred cccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhccc
Q 000569 890 YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENG 969 (1415)
Q Consensus 890 ~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 969 (1415)
. .|..-+..|+.. .|-.+.+-+|..+..+...+.. ++..
T Consensus 405 ~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~------------------------------EeL~ 443 (516)
T KOG2956|consen 405 L------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSA------------------------------EELL 443 (516)
T ss_pred h------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCH------------------------------HHHH
Confidence 1 233333333332 4446676677665433332210 0000
Q ss_pred ccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC-CCCChh
Q 000569 970 EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG-HLFSLP 1021 (1415)
Q Consensus 970 ~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G-~~f~~~ 1021 (1415)
..++ -+.=++...+......||+.|+=.|-.+...-| ..+.|.
T Consensus 444 ~ll~---------diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 444 NLLP---------DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred Hhhh---------hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 0000 123333344456678999999999999888888 666553
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=68.15 E-value=35 Score=40.13 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHhcC-CCCChhHH--HHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 000569 996 RPEIRKSALQVLFETLRNHG-HLFSLPLW--ERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCT 1072 (1415)
Q Consensus 996 R~eVR~~Al~tLF~iL~~~G-~~f~~~~W--~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~ 1072 (1415)
..+||..|++.+|+++..|| ..|+...+ ......-+..+|...... . ..+...
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------------------~-----~~~~~~ 132 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-------------------E-----NPELQA 132 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-------------------C-----CHHHHH
Confidence 78999999999999999999 45555444 112222233333333221 0 114667
Q ss_pred HHHHHHHHHHHH
Q 000569 1073 LALQLVVDLFVK 1084 (1415)
Q Consensus 1073 ~aL~~lv~Lf~~ 1084 (1415)
.|..|+++|+..
T Consensus 133 ~a~EGl~KLlL~ 144 (298)
T PF12719_consen 133 IAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHhc
Confidence 799999998765
No 32
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.60 E-value=2.5e+02 Score=37.53 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcccccccc-CcHHHHH-HHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH--
Q 000569 831 IRELIIRCVSQMVLSRVNNVKS-GWKSMFM-VFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL-- 906 (1415)
Q Consensus 831 ire~vL~cl~~~i~~~~~~I~S-GW~~IF~-iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL-- 906 (1415)
-|..+.+.+..+++.+...++| |=.-.|+ ++.++.++++|+-.-.+|..++.|.+-.++.=+- ...+-|.+-|-
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F--~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPF--TEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCcc--HHHHHHHhheeee
Confidence 3677788888889999999999 8898998 7788889999999999999999998832221110 23344555553
Q ss_pred HHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhhhhHHHHHH
Q 000569 907 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLA 986 (1415)
Q Consensus 907 ~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~ 986 (1415)
..|.-.+.|.+. .+.=.+-..+.. .+++.+....+-+|+|.
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~--------------------------------------al~stP~Fa~~~lp~Ll 261 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRS--------------------------------------ALVSTPSFAPFALPLLL 261 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHH--------------------------------------HHhcCccchhhHHHHHH
Confidence 345555544321 110000000000 11122234456666544
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHH
Q 000569 987 GLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 1036 (1415)
Q Consensus 987 ~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~ 1036 (1415)
. =..++.+-+..-+++||-++...||..==-++|...+..+=+-+++
T Consensus 262 E---KL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 262 E---KLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred H---HhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 3 1234556788899999999999999652224566554444333444
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=61.56 E-value=14 Score=27.79 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=20.8
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHHHH
Q 000569 986 AGLSELSFDPRPEIRKSALQVLFETLR 1012 (1415)
Q Consensus 986 ~~L~~l~~d~R~eVR~~Al~tLF~iL~ 1012 (1415)
-.+.+...|+.++||..|+..|-++.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 344566779999999999999988765
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=60.30 E-value=35 Score=33.18 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccc
Q 000569 772 DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK 851 (1415)
Q Consensus 772 ~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~ 851 (1415)
+++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..+++..+.++.++.........
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 33444445667788888888888776321 3333333455778888777764 5789999999999999765432211
Q ss_pred cCcHH-HHHHHHHhhcCChhHHHHHHHHHHHHH
Q 000569 852 SGWKS-MFMVFTTAAYDDHKNIVLLAFEIIEKI 883 (1415)
Q Consensus 852 SGW~~-IF~iL~~aa~~~~~~lV~~aF~~l~~I 883 (1415)
.=++. +...|-..-.+.+..+.+.+..++..+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 11111 233333333334555556665555544
No 35
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.27 E-value=7.6 Score=53.73 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCC
Q 000569 978 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHL 1017 (1415)
Q Consensus 978 ~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~ 1017 (1415)
...|-.++..+.....|+...+=..+.++.-.++..|-..
T Consensus 1066 kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~ 1105 (1514)
T KOG0929|consen 1066 KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFEN 1105 (1514)
T ss_pred hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhh
Confidence 4579999999998888998889889999888888877533
No 36
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=56.38 E-value=1.1e+02 Score=35.87 Aligned_cols=106 Identities=14% Similarity=0.254 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccc
Q 000569 768 HVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 847 (1415)
Q Consensus 768 ~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~ 847 (1415)
+.+...+.-...|++..||..|+.+|...+ ++++ + +-.+++.-|...+. ..+.+|+...++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~-~-----~a~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDK-E-----LAKEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhCh-H-----HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcC
Confidence 445555555667788899999999998776 4554 2 23344455666553 3488999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000569 848 NNVKSGWK---------SMFMVFTTAAYDDHKNIVLLAFEIIEK 882 (1415)
Q Consensus 848 ~~I~SGW~---------~IF~iL~~aa~~~~~~lV~~aF~~l~~ 882 (1415)
..+-..+. .+..+|.....+.++++-..|-+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 76654433 466666655555555555555555543
No 37
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=55.67 E-value=1.2e+02 Score=32.75 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHH-HHH
Q 000569 782 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM-FMV 860 (1415)
Q Consensus 782 n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~I-F~i 860 (1415)
|+.||.-|+-++..|+.++=.-=| .+ -|...-+-+.+++.||...+.++.+++....-..+ ..+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHH
Confidence 467888899999999877632211 01 12222233467899999999999999876433332 222 344
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhh
Q 000569 861 FTTAAYDDHKNIVLLAFEIIEKIIRD 886 (1415)
Q Consensus 861 L~~aa~~~~~~lV~~aF~~l~~I~~d 886 (1415)
+. +-.|+++.+...|=..+..+...
T Consensus 69 l~-~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LK-LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHHHHh
Confidence 44 34788999988888888777665
No 38
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=55.64 E-value=5.2e+02 Score=32.55 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=85.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhccccc
Q 000569 860 VFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLS 939 (1415)
Q Consensus 860 iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~ 939 (1415)
++..+.....+..++.+++.+.-|+. +..+| .+++.+||..|-.-.+.. +.+-.|-..+++. ......
T Consensus 181 i~~iC~~Ts~~~di~~~L~vldaii~--y~~iP---~~sl~~~i~vLCsi~~~~---~l~~~~w~~m~nL----~~S~~g 248 (464)
T PF11864_consen 181 ICTICKSTSSEDDIEACLSVLDAIIT--YGDIP---SESLSPCIEVLCSIVNSV---SLCKPSWRTMRNL----LKSHLG 248 (464)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHH--cCcCC---hHHHHHHHHHHhhHhccc---ccchhHHHHHHHH----HcCccH
Confidence 34444455567778999999998886 56788 789999999997765544 3333333333322 111100
Q ss_pred ccCCCchhhhcccCCCCCCCcc-----hhhh----hcccccCCcchhhhh-HHH--HHHHHhhhcCCCcHHHHHHHHHHH
Q 000569 940 ASSSNKDKEISAKIPPASPRPV-----KELK----LENGEMIDKDDHLYF-WFP--LLAGLSELSFDPRPEIRKSALQVL 1007 (1415)
Q Consensus 940 ~~~~~~~~~~~~~i~~~~~~~~-----~~~~----~~~~~~~~~~~~~~l-W~p--LL~~L~~l~~d~R~eVR~~Al~tL 1007 (1415)
...- ..+-.-+.+.++... -.|. ...-.....+....+ .-| ++.+|.....-...-|=.--+..+
T Consensus 249 ~~~i---~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 249 HSAI---RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred HHHH---HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 0000 000000000000000 0000 000000000111111 223 777888776544445666778888
Q ss_pred HHHH-HhcCCCCChhHHHHHHHHhhhhhHHhhhh
Q 000569 1008 FETL-RNHGHLFSLPLWERVFDSVLFPIFDYVRH 1040 (1415)
Q Consensus 1008 F~iL-~~~G~~f~~~~W~~if~~VLFPif~~l~~ 1040 (1415)
.++| ..||..+....|+.+++ ++.-+++.+..
T Consensus 326 ~~ll~~~~~~~l~~~~W~~~~~-i~~~~~~~~~~ 358 (464)
T PF11864_consen 326 NRLLDGKYGRELSEEDWDIILD-IIEEIFDKIQP 358 (464)
T ss_pred HHHHhHhhhhhhcccCchHHHH-HHHHHHhhccc
Confidence 8888 99999999999998776 44445565543
No 39
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.66 E-value=79 Score=33.73 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhHHhhhc---------CCCCceehHHHHHHHHhhcccccc------ccchhhHHHHHHHHHhhcCCCCH
Q 000569 719 IIDFVKALCKVSMEELRS---------ASDPRVFSLTKIVEIAHYNMNRIR------LVWSSIWHVLSDFFVNIGCSENL 783 (1415)
Q Consensus 719 l~~fv~ALc~vS~eel~~---------~~~pr~F~L~kLveVa~~Nm~Ri~------~~W~~iW~~L~~~f~~v~~~~n~ 783 (1415)
.....+.||.++..+... ...+|.|+|+-|-.+-..+.+.+. ..-.-+++.+..++.+.+.+++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345678899998432221 123578999988888777666555 22245677888888988888777
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhhhhh-hhhhHHH-HHhhc-chHHHHHHHHHHHHHHH
Q 000569 784 SIAIFAMDSLRQLSMKFLEREELANYNFQNE-FMKPFVI-VMRKS-NAVEIRELIIRCVSQMV 843 (1415)
Q Consensus 784 ~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~-fL~Pfe~-im~~s-~~~eire~vL~cl~~~i 843 (1415)
.+-..++..+..+..+|-. . .+.|-+ |+.-... ++... ...+-|+.+|+++..+.
T Consensus 88 ~i~~~slri~~~l~~~~~~--~---Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRS--H---LKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 7766777777777655532 1 122322 2222222 23222 24568889999988775
No 40
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=52.93 E-value=13 Score=35.29 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCchhhhchHHHHHHH
Q 000569 581 AIKAIVTIADEDGNYLQEAWEHILTCV 607 (1415)
Q Consensus 581 alraLl~la~~~G~~L~~sW~~IL~~i 607 (1415)
.++.+..+..+.|+.+++||+.||.++
T Consensus 38 il~ci~qil~~~~~~i~SGW~~if~il 64 (86)
T PF09324_consen 38 ILECILQILQSRGENIKSGWKVIFSIL 64 (86)
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 456666777799999999999999875
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=49.44 E-value=1.2e+02 Score=29.22 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=65.3
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhh
Q 000569 985 LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQD 1064 (1415)
Q Consensus 985 L~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~ 1064 (1415)
+..|.++..+...++|..|+.+|..+-.. +++.+..+...=.+|.+-.+.... +..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~-----------------~~~-- 64 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSE-----------------DEE-- 64 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCC-----------------CHH--
Confidence 44455555677789999999998886653 366777777734445555544310 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 000569 1065 AWLYETCTLALQLVVDLFVKFYNTVNPLLR-KVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1123 (1415)
Q Consensus 1065 ~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~-~~l~lL~~~i~q~~e~la~ig~~~l~~li 1123 (1415)
+...+.-+|..++.-.. .....+.. +++..|..++...+....+.++.+|.+|.
T Consensus 65 --v~~~a~~~L~~l~~~~~---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 65 --VVKAALWALRNLAAGPE---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHccCcH---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11233444444443211 11222232 47888888888888888888888887763
No 42
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=49.08 E-value=3.8e+02 Score=29.05 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=44.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHh------HhHHHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHHh
Q 000569 1061 LDQDAWLYETCTLALQLVVDLFVKFYNT------VNPLLRKVLMLLVSFIKRPHQ-SLAGIGIAAFVRLMSN 1125 (1415)
Q Consensus 1061 ~~~~~W~~eT~~~aL~~lv~Lf~~yf~~------l~~~l~~~l~lL~~~i~q~~e-~la~ig~~~l~~li~~ 1125 (1415)
.+.+.| ++|+.+.+..+-|..++ +..++..+++-+...+.++.| ++.+=|-.-++.++..
T Consensus 99 ~d~~~W-----~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 99 VDVEDW-----VLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred ccHHHH-----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 455678 68998888888886643 445666677777777778998 8888888888877764
No 43
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=46.66 E-value=98 Score=36.92 Aligned_cols=111 Identities=13% Similarity=0.231 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHHH-HHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 000569 995 PRPEIRKSALQVLF-ETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTL 1073 (1415)
Q Consensus 995 ~R~eVR~~Al~tLF-~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~ 1073 (1415)
.-|+.|..-+=.++ -++...|..+.+ .-..|++.|+-|.++-+....+. -+ +-++.
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~~~---------------yP-------e~r~~ 139 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDFEE---------------YP-------EHRVN 139 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTSSS---------------SH-------HHHHH
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhh---------------Ch-------HHHHH
Confidence 44555655444444 455566766654 44677777777877777542111 11 33333
Q ss_pred HHHHHHHHHHHHHHhHhH----HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCC
Q 000569 1074 ALQLVVDLFVKFYNTVNP----LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGN 1128 (1415)
Q Consensus 1074 aL~~lv~Lf~~yf~~l~~----~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~ 1128 (1415)
=.+.+..+..++|+.+.. .+..+++-+.|.+++.+..++..|..++..|+.+...
T Consensus 140 ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 140 FFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 444444455556666643 5889999999999999999999999999999997665
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=45.51 E-value=3e+02 Score=26.84 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 000569 999 IRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLV 1078 (1415)
Q Consensus 999 VR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~l 1078 (1415)
.|++++-.|-.+-..-|.. +...++.++=|++..+.. +...-.| ....+|..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rVRy---~AcEaL~ni 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRVRY---YACEALYNI 54 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHHHH---HHHHHHHHH
Confidence 3777887777776655544 778888899898877632 1111122 234455555
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 000569 1079 VDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1123 (1415)
Q Consensus 1079 v~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li 1123 (1415)
++.+. +.+-+.+.++++.|...+...++. .+.|..-|-+|+
T Consensus 55 ~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 55 SKVAR---GEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence 55543 444557888999999988887776 455556665554
No 45
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=45.49 E-value=1.5e+02 Score=30.91 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred HHHHHHhhc-cCcHHHHHHHHHHHHHHHHHHhHHHHHHHH--hHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHh
Q 000569 39 CLSLLKNSA-STLMIVFQLSCSIFMSLVSRFRAGLKAEIG--VFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLC 110 (1415)
Q Consensus 39 c~~L~~n~~-s~~~~vf~lsl~if~~l~~~~r~~lK~eie--vf~~~i~l~ile~~~~~~~~~k~~~l~~l~~l~ 110 (1415)
.++|-+-.. +.++.|.-.+|.+.=.++.+...++..||. -|+++++.+++..+.+++.+-|..+|+.+....
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 455555554 458888889999999999999999999996 789986678876554455566778888887765
No 46
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=45.20 E-value=1.4e+02 Score=29.17 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=53.2
Q ss_pred hhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 000569 812 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 885 (1415)
Q Consensus 812 Q~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 885 (1415)
-+.+++|....+. ..+..||....+++.++.......+-.--..||..|.....|.+++ |+.|-+.|..++.
T Consensus 25 l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 3566777665443 4678899999999999998776666556788898888888887776 6666677765544
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.69 E-value=1e+03 Score=32.88 Aligned_cols=276 Identities=17% Similarity=0.231 Sum_probs=161.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHH
Q 000569 778 GCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 857 (1415)
Q Consensus 778 ~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~I 857 (1415)
+...++.+|.+|.--+|++..|.-++ ++. .-|..+.+.+..+..+.+..-||..+=+.+..+-..-..- +|+-+
T Consensus 46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~~-e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPel 119 (1075)
T KOG2171|consen 46 ATSADPQVRQLAAVLLRKLLTKHWSR--LSA-EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPEL 119 (1075)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHhhc--CCH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 34568899999999999999885432 111 1134444444445555666778877777777665443333 79999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhccc
Q 000569 858 FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 937 (1415)
Q Consensus 858 F~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~ 937 (1415)
...|-.+..+.++..=..||-++..+...+=... ...+.++...+.+ +-+..+..|-..|+.-+-..+..+..
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q-~~~d~s~~vr~~a~rA~~a~~~~~~~-- 192 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQ-TMTDPSSPVRVAAVRALGAFAEYLEN-- 192 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHHhcc--
Confidence 9999999998899888999998887665542221 2233444443333 22222222444444333222221100
Q ss_pred ccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcc--hhhhhHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhc
Q 000569 938 LSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKD--DHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFETLRNH 1014 (1415)
Q Consensus 938 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~lW~p-LL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~ 1014 (1415)
+++ ...+--+| ++..+.+++.+.+.+.-.+++..|-+++.+-
T Consensus 193 -----------------------------------~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 193 -----------------------------------NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred -----------------------------------chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 000 12334566 8888888888888888899999999998877
Q ss_pred CCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHh----
Q 000569 1015 GHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVN---- 1090 (1415)
Q Consensus 1015 G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~---- 1090 (1415)
+..+++.. ..||==.+..... .+ -...++..||.-++.+-. |=....
T Consensus 238 pk~l~~~l-----~~ii~~~l~Ia~n--------------------~~---l~~~~R~~ALe~ivs~~e-~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 238 PKLLRPHL-----SQIIQFSLEIAKN--------------------KE---LENSIRHLALEFLVSLSE-YAPAMCKKLA 288 (1075)
T ss_pred hHHHHHHH-----HHHHHHHHHHhhc--------------------cc---ccHHHHHHHHHHHHHHHH-hhHHHhhhch
Confidence 66554422 2222111111111 11 112566778887776533 311111
Q ss_pred HHHHHHHHHHHHHHccc----------------chhHHHHHHHHHHHHHHhcCCCC
Q 000569 1091 PLLRKVLMLLVSFIKRP----------------HQSLAGIGIAAFVRLMSNAGNLF 1130 (1415)
Q Consensus 1091 ~~l~~~l~lL~~~i~q~----------------~e~la~ig~~~l~~li~~~g~~f 1130 (1415)
.+.+.++-.+..+|+.. .++.+++|.+++-++-.+.|++-
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~ 344 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ 344 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh
Confidence 23445555666666641 24688899999999988888764
No 48
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=43.32 E-value=7.8e+02 Score=31.00 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhh
Q 000569 870 KNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEI 949 (1415)
Q Consensus 870 ~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~ 949 (1415)
......-|+.+..+++=.+..+. .+....+|+.+...|+++...+.=..++..|-.+..+
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y----------------- 207 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYLD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY----------------- 207 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-----------------
Confidence 34455567777766665555554 4677888888888877665432213444444322211
Q ss_pred cccCCCCCCCcchhhhhcccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 000569 950 SAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDS 1029 (1415)
Q Consensus 950 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~ 1029 (1415)
|.+|+ .---+++..|..+..-. +..+.|-+++-.++.+|-+. ..+
T Consensus 208 -~~iP~-----------------------~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i-- 252 (464)
T PF11864_consen 208 -GDIPS-----------------------ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAI-- 252 (464)
T ss_pred -CcCCh-----------------------HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHH--
Confidence 11111 01123555555553222 78888888888888877322 112
Q ss_pred hhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH--------hHhHHHHHHHHHHH
Q 000569 1030 VLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYN--------TVNPLLRKVLMLLV 1101 (1415)
Q Consensus 1030 VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~--------~l~~~l~~~l~lL~ 1101 (1415)
.=|.+.++.. .. +. .. -...++|-+.++....- .+..-..-++.-|.
T Consensus 253 --~~L~~iL~~~-~~---------------~~-~~------~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~ 307 (464)
T PF11864_consen 253 --RTLCDILRSP-DP---------------QN-KR------DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLL 307 (464)
T ss_pred --HHHHHHHccc-Cc---------------cc-cc------cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHH
Confidence 1222222210 00 00 00 12244455554444331 22211223666677
Q ss_pred HHHcccchhHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhhcc
Q 000569 1102 SFIKRPHQSLAGIGIAAFVRLM-SNAGNLFSDEKWLEVAESLKEAAKATLP 1151 (1415)
Q Consensus 1102 ~~i~q~~e~la~ig~~~l~~li-~~~g~~f~~~~W~~i~~~l~~l~~~t~~ 1151 (1415)
.-++..+..++---..++.+++ .+.++.+.++.|+.+++.+.+++..+.+
T Consensus 308 ~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 308 NALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 7777888888877888899999 8888889999999999988886554443
No 49
>PRK09687 putative lyase; Provisional
Probab=41.90 E-value=3.8e+02 Score=31.36 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=17.0
Q ss_pred HhhhcCCCcHHHHHHHHHHHHH
Q 000569 988 LSELSFDPRPEIRKSALQVLFE 1009 (1415)
Q Consensus 988 L~~l~~d~R~eVR~~Al~tLF~ 1009 (1415)
|.....|+..+||..|+..|=+
T Consensus 197 L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 197 FVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHhcCCChHHHHHHHHHHHc
Confidence 4444579999999999998844
No 50
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=41.87 E-value=2.2e+02 Score=29.87 Aligned_cols=71 Identities=7% Similarity=0.019 Sum_probs=52.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHH--hHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHh
Q 000569 37 YLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIG--VFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLC 110 (1415)
Q Consensus 37 ~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eie--vf~~~i~l~ile~~~~~~~~~k~~~l~~l~~l~ 110 (1415)
+..++|-+-..+.++.|--.+|.+.=.++.+...++..||. -|++++ .+++..+ +..+-|..+|+.+....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL-~kl~~~~--~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL-KKLINDR--VHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH-HHHhccc--CCHHHHHHHHHHHHHHH
Confidence 34566666666788999999999999999999999999994 688775 4666554 33355666777776653
No 51
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=39.28 E-value=5e+02 Score=30.99 Aligned_cols=99 Identities=9% Similarity=0.177 Sum_probs=70.2
Q ss_pred HHHHHHHHHHccccccccCcHHHHHHHH-Hh----hc--CChhHHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHH
Q 000569 835 IIRCVSQMVLSRVNNVKSGWKSMFMVFT-TA----AY--DDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLI 907 (1415)
Q Consensus 835 vL~cl~~~i~~~~~~I~SGW~~IF~iL~-~a----a~--~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~ 907 (1415)
||.++..++..-++.+...=..||+.+= .+ .+ .+.|+.-..=|..++.|+..+++.+...+++.|..+++++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi- 170 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI- 170 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-
Confidence 6788888888877777766666654332 21 12 2357788888999999998877766555578999999998
Q ss_pred HHHhCCCCccccHHHHHHHHHHHHhhh
Q 000569 908 AFTNSRFNKDISLNAIAFLRFCATKLA 934 (1415)
Q Consensus 908 ~F~~q~~d~niSL~AI~~L~~~~~~l~ 934 (1415)
..+.+....+|+-+++..+.....++.
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 556666667899888888776655543
No 52
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=38.56 E-value=4.2e+02 Score=33.03 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=71.3
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchh
Q 000569 984 LLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQ 1063 (1415)
Q Consensus 984 LL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~ 1063 (1415)
+..-|..+..+++.+=|++|+.-|..++.. +.| ..|+..|.++|.-+|+.+.... ++
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sf--svWeq~f~~iL~~l~EvL~d~~-----------------~~-- 344 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCE--GSF--SVWEQHFAEILLLLLEVLSDSE-----------------DE-- 344 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHc--cch--hHHHHHHHHHHHHHHHHHccch-----------------hh--
Confidence 344445556678999999999999998883 455 5899999999999999886411 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHH
Q 000569 1064 DAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1124 (1415)
Q Consensus 1064 ~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~ 1124 (1415)
.-..+||+-+.++.++-=..+...-.-...-++.+-+..++...+++..|.-+++.
T Consensus 345 -----~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 345 -----IIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred -----HHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 22466888888777653222222222233344455666666555555555444433
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=36.52 E-value=1.9e+02 Score=31.26 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 000569 996 RPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLAL 1075 (1415)
Q Consensus 996 R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL 1075 (1415)
.+.||+-|+-++-++...|+...++ |-. .++..+.. ++ ..-+..|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~D--------------------~~-----~~VR~~al 46 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLRD--------------------ED-----PLVRKTAL 46 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHCC--------------------CC-----HHHHHHHH
Confidence 3789999999999999999776633 221 22222221 11 13345567
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhc
Q 000569 1076 QLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1126 (1415)
Q Consensus 1076 ~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~ 1126 (1415)
..+..|..+-+-...+ .++..+..|+..+++.++..+..+|.++...-
T Consensus 47 ~~Ls~Li~~d~ik~k~---~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 47 LVLSHLILEDMIKVKG---QLFSRILKLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHcCceeehh---hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 7677766554333332 33455667789999999999999999999973
No 54
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=3.7e+02 Score=34.84 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh-hhhhhhHHHHHh--hcchHHHHHHHHHHHHHHH
Q 000569 767 WHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ-NEFMKPFVIVMR--KSNAVEIRELIIRCVSQMV 843 (1415)
Q Consensus 767 W~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ-~~fL~Pfe~im~--~s~~~eire~vL~cl~~~i 843 (1415)
-+.+.+-|.+...|+++.+|..|+.++.|..+ +....+ -+. ..|| +.++. +..+++||..|=+.+.-++
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~--~~~qal---~~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Ll 243 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII--IQTQAL---YVHIDKFL---EILFALANDEDPEVRKNVCRALVFLL 243 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheee--cCcHHH---HHHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 35677888888899999999999999998652 111110 001 1233 44433 4467899999999999999
Q ss_pred HccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 000569 844 LSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 885 (1415)
Q Consensus 844 ~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 885 (1415)
+.+-+++..--+.|.+-.-...+|.++++.--|.+-.--+++
T Consensus 244 evr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 244 EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 999999999888888777777778888876666666555544
No 55
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.24 E-value=75 Score=23.81 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000569 771 SDFFVNIGCSENLSIAIFAMDSLRQLS 797 (1415)
Q Consensus 771 ~~~f~~v~~~~n~~v~~~AvdsLrqLa 797 (1415)
-+++.+..++++..||..|+.+|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356777778999999999999999876
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=32.19 E-value=73 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 000569 1071 CTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRL 1122 (1415)
Q Consensus 1071 ~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~l 1122 (1415)
...|+..++.+-....+.+.+++++++..|..++..+++.+...++.||.++
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3445666665544556667788999999999999988888877777777653
No 57
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.99 E-value=2.2e+02 Score=29.90 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHH
Q 000569 779 CSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKS 856 (1415)
Q Consensus 779 ~~~n~~v~~~AvdsLrqLa~kfLe--~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~ 856 (1415)
.|+|+.+..+|+..|..++.---. +.|++. ++|+..+..+.....+.+|++.+++.+.+ |..
T Consensus 47 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas----k~Fl~eL~kl~~~~~~~~Vk~kil~li~~------------W~~ 110 (144)
T cd03568 47 NHKDPNVQLRALTLLDACAENCGKRFHQEVAS----RDFTQELKKLINDRVHPTVKEKLREVVKQ------------WAD 110 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh----HHHHHHHHHHhcccCCHHHHHHHHHHHHH------------HHH
Confidence 368899999888776654421100 123332 46677777766655788999999988874 655
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHH
Q 000569 857 MFMVFTTAAYDDHKNIVLLAFEIIE 881 (1415)
Q Consensus 857 IF~iL~~aa~~~~~~lV~~aF~~l~ 881 (1415)
-|. .+++-..+..+|+.|+
T Consensus 111 ~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 111 EFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HhC------CCcccHHHHHHHHHHH
Confidence 443 2334445666666654
No 58
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.99 E-value=1.9e+03 Score=31.65 Aligned_cols=146 Identities=17% Similarity=0.268 Sum_probs=89.4
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCC
Q 000569 979 YFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFS------LPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQ 1052 (1415)
Q Consensus 979 ~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~------~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~ 1052 (1415)
.+.--+|..|-.-+++.-=.||-++.-.|-++|. |..++ |+.|.. +|+..|.++...+
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~--g~~~~~~~e~lpelw~~-----~fRvmDDIKEsVR--------- 1098 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQ--GRPFDQVKEKLPELWEA-----AFRVMDDIKESVR--------- 1098 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHH-----HHHHHHHHHHHHH---------
Confidence 3444577777777776666899999999999999 44442 355654 5566777765321
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHHHc-----ccchhHHHHHHHHHHHHHHhc
Q 000569 1053 GVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP-LLRKVLMLLVSFIK-----RPHQSLAGIGIAAFVRLMSNA 1126 (1415)
Q Consensus 1053 ~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~-~l~~~l~lL~~~i~-----q~~e~la~ig~~~l~~li~~~ 1126 (1415)
+....+.+-+++|...--+.-++ -=.++++.++-|.- ..-+.+.|.++.-+-.|+.+.
T Consensus 1099 ----------------~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1099 ----------------EAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred ----------------HHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 22334445555554444443221 12334444444433 445677788888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcchhhhcc
Q 000569 1127 GNLFSDEKWLEVAESLKEAAKATLPDFSYLG 1157 (1415)
Q Consensus 1127 g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~ 1157 (1415)
|..+ ..+--+++-.|-+++...-|.....+
T Consensus 1163 g~~l-kP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1163 GKEL-KPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhhh-cchhhHHHHHHHHHccccchHHHHHH
Confidence 8877 45666777777777766666544443
No 59
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.94 E-value=5.3e+02 Score=26.91 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=55.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHH--hHHHHHHHHHhcCC---CCCChhHHHHHHHHHHHH---
Q 000569 38 LCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIG--VFFPMIVLRVLENV---AQPNFQQKMIVLRFLEKL--- 109 (1415)
Q Consensus 38 Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eie--vf~~~i~l~ile~~---~~~~~~~k~~~l~~l~~l--- 109 (1415)
-.++|.+-..+.++.+--.+|.+.=.++.+....+..||. -|++++ .+++..+ ..++..-|..+|+.+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el-~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL-IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH-HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556666677889999999999999999999999999995 688885 4666431 123445566677777654
Q ss_pred -hhcch
Q 000569 110 -CIDSQ 114 (1415)
Q Consensus 110 -~~~p~ 114 (1415)
+++|+
T Consensus 118 f~~~p~ 123 (139)
T cd03567 118 LPHEPK 123 (139)
T ss_pred hcccch
Confidence 34555
No 60
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=29.67 E-value=7.9e+02 Score=30.81 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 000569 1081 LFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1137 (1415)
Q Consensus 1081 Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~ 1137 (1415)
+...||..++..+-++...+..|+......+-.-|..|+..+..+.+.....+.|+.
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~ 337 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKA 337 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccc
Confidence 445677777777777777777888887777778888899999999998888888884
No 61
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=29.64 E-value=1.2e+03 Score=29.73 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHhhccccccccchhhHH--HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHh
Q 000569 747 KIVEIAHYNMNRIRLVWSSIWH--VLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR 824 (1415)
Q Consensus 747 kLveVa~~Nm~Ri~~~W~~iW~--~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~ 824 (1415)
|+.++...-...-.-.+..+++ ++...+...-. .+.-+..-|++.|.+|+ +.++-..|-.+..+++-+..++.
T Consensus 179 Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La----~~~~g~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 179 RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELA----ETPHGLQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHH----cChhHHHHHHhCCHHHHHHHHHh
Q ss_pred hcchHH-----HHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh--hccCcccccccc
Q 000569 825 KSNAVE-----IRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR--DYFPYITETETT 897 (1415)
Q Consensus 825 ~s~~~e-----ire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~--d~l~~l~~~~~~ 897 (1415)
...... .=-..+.-..+|-......+..+++.+.+.+.......++.....||+++-.|.+ +....+.....+
T Consensus 254 ~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~ 333 (503)
T PF10508_consen 254 DSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP 333 (503)
T ss_pred ccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch
Q ss_pred cHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchh
Q 000569 898 TFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDH 977 (1415)
Q Consensus 898 ~f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1415)
.+..++..+..+.++... ++-+.++.-|-.+.. ........+-...
T Consensus 334 ~~~~~l~~~~~~~~~~~~-~lk~r~l~al~~il~---------------------------------~~~~~~~~~i~~~ 379 (503)
T PF10508_consen 334 AMKHVLKAIGDAIKSGST-ELKLRALHALASILT---------------------------------SGTDRQDNDILSI 379 (503)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHh---------------------------------cCCCCchHHHHHH
Q ss_pred hhhHHHHHH------HHhhhcCCCcHHHHHHHHHHHHHHH
Q 000569 978 LYFWFPLLA------GLSELSFDPRPEIRKSALQVLFETL 1011 (1415)
Q Consensus 978 ~~lW~pLL~------~L~~l~~d~R~eVR~~Al~tLF~iL 1011 (1415)
..-||-.+. -+.+++..|=+|+|..|+..|-.+.
T Consensus 380 ~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 380 TESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALA 419 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHh
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.65 E-value=1.3e+02 Score=27.82 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHH
Q 000569 779 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 858 (1415)
Q Consensus 779 ~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF 858 (1415)
.+++..++..|+..|.++. ..+.+.++...+ ...+..||..++..+.++ |.+.++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 4788999999988876321 123445565555 568899999999999865 345555
Q ss_pred HHHHHhhcCChhHHHH
Q 000569 859 MVFTTAAYDDHKNIVL 874 (1415)
Q Consensus 859 ~iL~~aa~~~~~~lV~ 874 (1415)
..|.....++....|+
T Consensus 65 ~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHHHHHHTC-SSHHHH
T ss_pred HHHHHHHcCCCcHHHH
Confidence 5555555444444443
No 63
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.97 E-value=2.4e+02 Score=33.32 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCH
Q 000569 1063 QDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSD 1132 (1415)
Q Consensus 1063 ~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~ 1132 (1415)
.+.| +-.+-+|..|..|-..|.+.+.++|.++.-.++.-++....+++|.+|-|+-.+....+.+.++
T Consensus 99 s~dW--~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 99 SDDW--EDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred hHHH--HHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569 6778899999999999999999999999999999999999999999999999999988777744
No 64
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.49 E-value=3.2e+02 Score=28.61 Aligned_cols=80 Identities=18% Similarity=0.371 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh---hhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcH
Q 000569 779 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ---NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 855 (1415)
Q Consensus 779 ~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ---~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~ 855 (1415)
.|+|+.+..+|+..|..++ +.-=..|+-+ ++|+..+..+.....+..|++.+++.+. +|.
T Consensus 51 ~~~n~~vql~AL~LLe~~v-----kNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~------------~W~ 113 (142)
T cd03569 51 LSKNPNVQLYALLLLESCV-----KNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ------------AWA 113 (142)
T ss_pred cCCChHHHHHHHHHHHHHH-----HHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH------------HHH
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHH
Q 000569 856 SMFMVFTTAAYDDHKNIVLLAFEIIE 881 (1415)
Q Consensus 856 ~IF~iL~~aa~~~~~~lV~~aF~~l~ 881 (1415)
.-| ..+++-..+..+|+.|+
T Consensus 114 ~~f------~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 114 LAF------RNKPQLKYVVDTYQILK 133 (142)
T ss_pred HHh------CCCcccHHHHHHHHHHH
No 65
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=23.59 E-value=4.6e+02 Score=31.15 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Q 000569 1068 YETCTLALQLVVDLFVKFY--NTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFS-DEKWLEVAESLKE 1144 (1415)
Q Consensus 1068 ~eT~~~aL~~lv~Lf~~yf--~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~-~~~W~~i~~~l~~ 1144 (1415)
..|+..+|.++++++.+++ +.+......+++.+..|++++...=...+..++.-|.++.|..-. ++.++.+...|.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 3788999999999998765 334455677888999999998755566778888888888774443 3445555555544
Q ss_pred HH
Q 000569 1145 AA 1146 (1415)
Q Consensus 1145 l~ 1146 (1415)
+.
T Consensus 137 ~l 138 (309)
T PF05004_consen 137 IL 138 (309)
T ss_pred HH
Confidence 43
No 66
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.46 E-value=9.5e+02 Score=26.14 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=76.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccc-
Q 000569 773 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK- 851 (1415)
Q Consensus 773 ~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~- 851 (1415)
++.+.+.+++..+|..|++.+..+...-| .|. ... -|...-+..+++..||....+.+..+-+.+.+-+.
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----vnP---~~c-vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGL-----VNP---KQC-VPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----CCh---HHH-HhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44556678899999999998876542111 110 111 13333355678899999999999988887765443
Q ss_pred ---cCcHHHHHHHHHhhcCChhHH---HHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCC---CCccccHHH
Q 000569 852 ---SGWKSMFMVFTTAAYDDHKNI---VLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSR---FNKDISLNA 922 (1415)
Q Consensus 852 ---SGW~~IF~iL~~aa~~~~~~l---V~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~---~d~niSL~A 922 (1415)
.|=+..|..-.....+..... ....|..+-.++++. ...-..++..|.+.-... .+.+..-.-
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~--------r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN--------RKSRRKFLKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc--------cHhHHHHHHHHHHHHHhhccccccccchhH
Confidence 355555544444333322111 223333333333311 112223333333322111 112334555
Q ss_pred HHHHHHHHHhhhc
Q 000569 923 IAFLRFCATKLAE 935 (1415)
Q Consensus 923 I~~L~~~~~~l~~ 935 (1415)
+.++.++++.++.
T Consensus 155 l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 155 LDFLLFLAENLAT 167 (187)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888888874
No 67
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=22.33 E-value=7.3e+02 Score=31.72 Aligned_cols=125 Identities=17% Similarity=0.262 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhchhh------------hhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHccccccccCc
Q 000569 787 IFAMDSLRQLSMKFLEREE------------LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 854 (1415)
Q Consensus 787 ~~AvdsLrqLa~kfLe~eE------------l~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW 854 (1415)
.-|||.+|.|+.+|-.+.. =.+|.|.+........+|. ..++.||.+|+.++..|+.|--+
T Consensus 393 iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~----- 465 (898)
T COG5240 393 IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYH----- 465 (898)
T ss_pred EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchh-----
Confidence 3477888888766533211 0234555555444555553 34688999999999999887421
Q ss_pred HHHHHHHHHhhcC----Chh-HHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHH-HHHH
Q 000569 855 KSMFMVFTTAAYD----DHK-NIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA-FLRF 928 (1415)
Q Consensus 855 ~~IF~iL~~aa~~----~~~-~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~q~~d~niSL~AI~-~L~~ 928 (1415)
+....||+.-+++ +.| ..|+.-+. .|+-+. .+ .-...|.||++|+-+..| .++-+++. .|+.
T Consensus 466 ~I~vrIL~iLG~EgP~a~~P~~yvrhIyN---R~iLEN--~i------vRsaAv~aLskf~ln~~d-~~~~~sv~~~lkR 533 (898)
T COG5240 466 QITVRILGILGREGPRAKTPGKYVRHIYN---RLILEN--NI------VRSAAVQALSKFALNISD-VVSPQSVENALKR 533 (898)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHH---HHHHhh--hH------HHHHHHHHHHHhccCccc-cccHHHHHHHHHH
Confidence 1223344443332 122 23443322 222111 11 124568899999988877 45555554 4555
Q ss_pred HH
Q 000569 929 CA 930 (1415)
Q Consensus 929 ~~ 930 (1415)
|.
T Consensus 534 cl 535 (898)
T COG5240 534 CL 535 (898)
T ss_pred Hh
Confidence 53
No 68
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.03 E-value=1.2e+03 Score=26.43 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCCCCCCCCCCCcch
Q 000569 983 PLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELD 1062 (1415)
Q Consensus 983 pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~~~~~~~~s~~~~ 1062 (1415)
+++..|..+...+..+.+.-++.-+.++.......| ..|-|++.....+.... ..++
T Consensus 38 ~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----------~~L~~~L~~~~~r~~~~-------------~~~~ 94 (234)
T PF12530_consen 38 PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----------PFLQPLLLLLILRIPSS-------------FSSK 94 (234)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----------HHHHHHHHHHHhhcccc-------------cCCC
Confidence 456666666666666666666666666655443333 12223333221111110 0112
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-cccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000569 1063 QDAWL-YETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFI-KRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAE 1140 (1415)
Q Consensus 1063 ~~~W~-~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i-~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~i~~ 1140 (1415)
...|. .-++..+++-+|....+ ...+++..+..|+ .+.++.....|..++..|...-.-.| -..|+-+..
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~-------~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-~s~w~vl~~ 166 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD-------HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-YSAWKVLQK 166 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh-------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHH
Confidence 23452 12233455556654333 5667788888888 67789999999999999998777777 677876666
Q ss_pred HH
Q 000569 1141 SL 1142 (1415)
Q Consensus 1141 ~l 1142 (1415)
.+
T Consensus 167 ~l 168 (234)
T PF12530_consen 167 KL 168 (234)
T ss_pred hc
Confidence 44
No 69
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.09 E-value=1.8e+03 Score=28.24 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=51.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcchHHHHHHHHHHHHHHHHcc
Q 000569 773 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 846 (1415)
Q Consensus 773 ~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~Pfe~im~~s~~~eire~vL~cl~~~i~~~ 846 (1415)
.|+....+++..|+..|+=+|..++ -+...+.++......|.|+..++..+...-++..+.-++.++...+
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIa---gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIA---GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccc---cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 4777778889999999998888776 3346677777788888999887766554456666677777765433
No 70
>PLN03205 ATR interacting protein; Provisional
Probab=20.54 E-value=7.6e+02 Score=30.09 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=58.0
Q ss_pred cccCChHHHHHHHHHHHHhhHHhhhcCCCCc-eehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCC-CHHHHHH
Q 000569 711 SQKLNSEAIIDFVKALCKVSMEELRSASDPR-VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSE-NLSIAIF 788 (1415)
Q Consensus 711 S~~L~~eal~~fv~ALc~vS~eel~~~~~pr-~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~-n~~v~~~ 788 (1415)
+...+-+++.+-+--||.+-...+- .| .=.|-.+.+=..-|..|+.--|..=|-.+-+..++++... ...|+.-
T Consensus 316 ~G~V~lqtLlEaLLdLC~v~n~a~V----~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLE 391 (652)
T PLN03205 316 YGFVNLKSLVEPLLDLCKAETAVLV----HRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLE 391 (652)
T ss_pred CCeeeHHHHHHHHHHHHhcCchhhh----HHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeee
Confidence 4455555555555555555443332 12 1225555565677888999999999999999988887643 4578888
Q ss_pred HHHHHHHHHHH---hhchh
Q 000569 789 AMDSLRQLSMK---FLERE 804 (1415)
Q Consensus 789 AvdsLrqLa~k---fLe~e 804 (1415)
|+....-+.|+ +.++|
T Consensus 392 AvSIMnVIlmssna~~eRE 410 (652)
T PLN03205 392 ALSIMNIIVMSTDAYTARE 410 (652)
T ss_pred hhhhhHHhhhccchhHHHH
Confidence 88777766665 34454
No 71
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.06 E-value=1.2e+03 Score=27.18 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHhhhhhHHhh
Q 000569 977 HLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLF----SLPLWERVFDSVLFPIFDYV 1038 (1415)
Q Consensus 977 ~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f----~~~~W~~if~~VLFPif~~l 1038 (1415)
..+.|-.++=.+-.++-|..+++|-.+++.|-.++..-.... ...-...+|...|+|.+-.+
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~L 178 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYL 178 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcC
Confidence 345666666667777779999999999999999998443222 22222344444444544444
Done!