Query 000569
Match_columns 1415
No_of_seqs 387 out of 1125
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:30:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000569.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_342-346//hhsearch_pdb/000569hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 493.7 20.3 198 240-437 10-209 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 489.7 20.5 195 243-437 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 481.0 18.5 196 241-438 16-228 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 459.4 18.8 192 248-439 7-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 457.7 21.7 192 246-437 12-203 (347)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 48.0 36.3 294 771-1130 361-664 (852)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 46.7 36.7 38 1091-1128 635-672 (861)
8 1ibr_B P95, importin beta-1 su 1.0 1 1 45.9 19.2 290 782-1130 143-443 (462)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 42.8 22.1 305 766-1126 647-962 (1230)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 41.7 39.6 28 993-1020 639-666 (852)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=493.74 Aligned_cols=198 Identities=52% Similarity=0.899 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 89999999799999999996059524799999829999998999999770799995678733037885119999999852
Q 000569 240 STIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDS 319 (1415)
Q Consensus 240 ~~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~ige~lg~~~~~~~~vl~~y~~~ 319 (1415)
.+||+.|++|+.+++|+.+||.|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++||+.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 899998868999998624878986599999999999999651999--989910899999999873103689745799998
Q 000569 320 FDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSA 397 (1415)
Q Consensus 320 ~~f~~~~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np~--~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~ 397 (1415)
|||+|+++|+|||.||.+||||||+|+||||||+||+|||+|||+ +|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 8688731367899999499999999997606455568632
Q 000569 398 DDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 437 (1415)
Q Consensus 398 ~~Fi~n~~g~~~~~d~~~~~L~~iY~~i~~~~i~~~~~~~ 437 (1415)
++||+|+||+|+|+|||+++|++||++|+++||+|+++..
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999986543678999999999999999848762789988
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=489.70 Aligned_cols=195 Identities=54% Similarity=0.907 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999799999999996059524799999829999998999999770799995678733037885119999999852899
Q 000569 243 EQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDF 322 (1415)
Q Consensus 243 e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~ige~lg~~~~~~~~vl~~y~~~~~f 322 (1415)
++.|++|+.+.+|+.+||.+||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99886899999862487898659999999999999965199998991089999999987310368974579999886887
Q 000569 323 QRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIR 402 (1415)
Q Consensus 323 ~~~~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~ 402 (1415)
+|+++|+|||.||.+||||||+|+||||||+||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 31367899999499999999997606455568632
Q 000569 403 NNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 437 (1415)
Q Consensus 403 n~~g~~~~~d~~~~~L~~iY~~i~~~~i~~~~~~~ 437 (1415)
|+||+|+|+|+|+++|++||++|+++||++++++.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=481.03 Aligned_cols=196 Identities=40% Similarity=0.649 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCC-CCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999997999999999960595247999998299999-989999997707-9999567873303788511999999985
Q 000569 241 TIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLKNA-SDLNKTLIGDYLGEREELPLKVMHAYVD 318 (1415)
Q Consensus 241 ~~e~~k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~-~p~~ia~fL~~~-~~l~k~~ige~lg~~~~~~~~vl~~y~~ 318 (1415)
+++++|++|+.+.+|+.+||.|||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ +.+||++||+
T Consensus 16 ~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 16 PRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999995499999999998898389998999999997276569999999980821--7999999985
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 289999886899999862487898659999999999999965199---------------99899108999999998731
Q 000569 319 SFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP---------------KVFTSADTAYVLAYSVILLN 383 (1415)
Q Consensus 319 ~~~f~~~~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np---------------~~f~~~d~~y~l~~siimLn 383 (1415)
.|||+|+++|+|||.||.+||||||+|+||||||+||+|||+||| +.|.++|+||+|||||||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42679997999999999808588519999999999999999818777532101001122345577028999999999980
Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 0368974579999886887313678999994999999999976064555686326
Q 000569 384 TDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLA 438 (1415)
Q Consensus 384 tdlhn~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~i~~~~i~~~~~~~~ 438 (1415)
||+|||++|+|||+++||+|+||+|+|+|||+++|++||++|+++||+|++|+.+
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1302643467777999999864656778888999999999998483468866779
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=459.43 Aligned_cols=192 Identities=37% Similarity=0.616 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999999999960595247999998299--99998999999770-79999567873303788511999999985289999
Q 000569 248 YKLELQEGISLFNRKPKKGIEFLINAKK--VGNTPEEIAAFLKN-ASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQR 324 (1415)
Q Consensus 248 ~K~~~~~~~~~Fn~~p~~gi~~l~~~~~--i~~~p~~ia~fL~~-~~~l~k~~ige~lg~~~~~~~~vl~~y~~~~~f~~ 324 (1415)
.|+.+.+|+.+||.+||+||+||++.+. ..++|++||+||+. +++|||++||||||+++++|.+||++||+.|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999815999999999986001589999999999984587889999999985784578999999999669799
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHH
Q ss_conf 88689999986248789865999999999999996519999899108999999998731036897457--9999886887
Q 000569 325 MEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADDFIR 402 (1415)
Q Consensus 325 ~~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~l~~siimLntdlhn~~~k--~kmt~~~Fi~ 402 (1415)
+++|+|||.||.+||||||+|+||||||+||+|||+|||+.|.|+|+||+|+||+||||||+|||++| +|||+++||+
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98999999999828488508899999999999999739986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 3136789999949999999999760645556863268
Q 000569 403 NNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAV 439 (1415)
Q Consensus 403 n~~g~~~~~d~~~~~L~~iY~~i~~~~i~~~~~~~~~ 439 (1415)
|+||+|+|+|||+++|++||++|+.+||+++..+..+
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=457.73 Aligned_cols=192 Identities=50% Similarity=0.880 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99799999999996059524799999829999998999999770799995678733037885119999999852899998
Q 000569 246 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRM 325 (1415)
Q Consensus 246 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~ige~lg~~~~~~~~vl~~y~~~~~f~~~ 325 (1415)
|++|..+.+|+.+||.+|++||+||+++|+++++|++||+||+.+++|||.+||+|||+++++|.+||++||+.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 86899999862487898659999999999999965199998991089999999987310368974579999886887313
Q 000569 326 EFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 405 (1415)
Q Consensus 326 ~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~ 405 (1415)
+||+|||.||.+||||||+|+||||||+||+|||+|||++|.++|+||+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 67899999499999999997606455568632
Q 000569 406 GIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 437 (1415)
Q Consensus 406 g~~~~~d~~~~~L~~iY~~i~~~~i~~~~~~~ 437 (1415)
|+|+|.|+|+++|+.+|++|+.+|+.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=47.95 Aligned_cols=294 Identities=11% Similarity=0.117 Sum_probs=124.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998613788887999999999999998410566421112555443599998206648999999999999997000124
Q 000569 771 SDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV 850 (1415)
Q Consensus 771 ~~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eire~iL~cl~~ii~~~~~~I 850 (1415)
.+++...-.+++..++..|+..|..++...- +.+. .+-..++..+...+ ..++..||.....++.++-...+...
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~--~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMI--PYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHG--GGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH--HHHH--HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 9999998559988999999999999986356--8899--87999999999871-79988999999999999998861104
Q ss_pred -CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCHHHHHHHH
Q ss_conf -558278999998731177057899999999999940068654343020999999999998078883--54388999999
Q 000569 851 -KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK--DISLNAIAFLR 927 (1415)
Q Consensus 851 -kSGW~~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~--niSL~AI~~L~ 927 (1415)
..--..++..+-....+.++.+-..|...+..++...-..+ ...+..++..|....+..... .+.+.+++.
T Consensus 436 ~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l----~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~-- 509 (852)
T 4fdd_A 436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL----VPYLAYILDTLVFAFSKYQHKNLLILYDAIGT-- 509 (852)
T ss_dssp TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG----GGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--
T ss_conf 789999999999999858988899999999999999736766----76799999999999988374799999999999--
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 98786210544446777101100369999999500110003666783201253999999785320799378999999999
Q 000569 928 FCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1007 (1415)
Q Consensus 928 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AL~tL 1007 (1415)
+++.+.. . ..+..+....+|.|........|+.+++| .+++++
T Consensus 510 -l~~~~~~----------------------------------~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l 552 (852)
T 4fdd_A 510 -LADSVGH----------------------------------H-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECL 552 (852)
T ss_dssp -HHHHHGG----------------------------------G-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHH
T ss_pred -HHHHHHH----------------------------------H-HCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHH
T ss_conf -9997424----------------------------------3-13678999988999999873330469999-999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHH----HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999974179999667999997822204886-431----058999899998888999860246389999999999999999
Q 000569 1008 FETLRNHGHLFSLPLWERVFDSVLFPIFDY-VRH----TIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLF 1082 (1415)
Q Consensus 1008 F~iL~~~G~~f~~~~W~~if~~VLfPil~~-l~~----~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~aL~~lv~Lf 1082 (1415)
-.+....|..|.+. =..++..++ .++.. +.. ...+...+ .++.. ...+...++.++++-+
T Consensus 553 ~~i~~~~g~~~~~~-~~~i~~~~~-~~l~~~l~~~~~~~~~~~~~~-----------~~d~~--~~~~~l~~l~~l~~~l 617 (852)
T 4fdd_A 553 SSVATALQSGFLPY-CEPVYQRCV-NLVQKTLAQAMLNNAQPDQYE-----------APDKD--FMIVALDLLSGLAEGL 617 (852)
T ss_dssp HHHHHHHGGGGHHH-HHHHHHHHH-HHHHHHHHHHHHHHHCTTTSC-----------CCCTH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHCCCCCCC-----------CCCCH--HHHHHHHHHHHHHHHH
T ss_conf 99999974867988-999999999-999999999987533886668-----------87611--9999999997899987
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99887686989--9999999997803603577999999999999608999
Q 000569 1083 VKFYNTVNPLL--RKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 1130 (1415)
Q Consensus 1083 ~~yf~~l~~~l--~~~l~lL~~~i~q~~e~la~~g~~cl~~li~~~g~~f 1130 (1415)
-..+.+.+ +.++.++..|+..++..+...+..++..+....+..|
T Consensus 618 ---~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 664 (852)
T 4fdd_A 618 ---GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV 664 (852)
T ss_dssp ---GGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred ---HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---47699883677189999998389984499999999999999816888
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=46.67 Aligned_cols=38 Identities=5% Similarity=0.089 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999999999978036035779999999999996089
Q 000569 1091 PLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGN 1128 (1415)
Q Consensus 1091 ~~l~~~l~lL~~~i~q~~e~la~~g~~cl~~li~~~g~ 1128 (1415)
+.++.++..|..++...+..+...+..++..+....|.
T Consensus 635 ~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 99999999999886556678999999999999987454
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=45.93 Aligned_cols=290 Identities=15% Similarity=0.165 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCCCCC---HHH
Q ss_conf 8879999999999999984105664211125554435999982066-489999999999999970001245582---789
Q 000569 782 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN-AVEIRELIIRCVSQMVLSRVNNVKSGW---KSM 857 (1415)
Q Consensus 782 n~~va~~AidsLrqL~~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~-~~eire~iL~cl~~ii~~~~~~IkSGW---~~I 857 (1415)
+..++..|+..|+.++-++-. +.+. .+-..++..+...+.... +.+||...++|+..++.....+. ..| ..+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l 218 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFI 218 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 789999999999999981871-5347--679999999999867999989999999999999999999843-236789899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999873117705789999999999994006865434302099-999999999807888354388999999987862105
Q 000569 858 FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFT-DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 936 (1415)
Q Consensus 858 F~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~-dlI~cL~~F~~~~~~~niSL~AI~~L~~~~~~l~~~ 936 (1415)
..++.....+.++.+-..+++++..++..+...+. ..+. .++..+....+. .+.++...|++++..++....+.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999853799789999999999999999899999----88888999999999828-86099999999999999988878
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCC-CHHHHHHHHHHHH-HHHHC---CCCCHHHHHHHHHHHHHHH
Q ss_conf 44446777101100369999999500110003666783-2012539999997-85320---7993789999999999999
Q 000569 937 DLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDK-DDHLYFWFPLLAG-LSELS---FDPRPEIRKSALQVLFETL 1011 (1415)
Q Consensus 937 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~lW~pLL~~-L~~l~---~d~R~eVR~~AL~tLF~iL 1011 (1415)
.... . +. . .+..+ .......- ..+..-.+|.+.. +.+.- .|....+|..|...|-.+.
T Consensus 294 ~~~~--~----~~-~--~~~~~--------~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 294 AIEA--S----EA-A--EQGRP--------PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHH--C----CT-T--CSSSC--------SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHC--C----CC-C--CCCCC--------CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8760--1----00-0--03788--------63035999998766400799999874444444443328899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7417999966799999782220488643105899989999888899986024638-999999999999999999887686
Q 000569 1012 RNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAW-LYETCTLALQLVVDLFVKFYNTVN 1090 (1415)
Q Consensus 1012 ~~~G~~f~~~~W~~if~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W-~~eT~~~aL~~lv~Lf~~yf~~l~ 1090 (1415)
...|. .++. .++|.+..... +. .| ..++...++..+++-.. -+.+.
T Consensus 357 ~~~~~--------~~~~-~~~~~l~~~l~-------------------~~---~~~~r~aal~~l~~l~~~~~--~~~~~ 403 (462)
T 1ibr_B 357 TCCED--------DIVP-HVLPFIKEHIK-------------------NP---DWRYRDAAVMAFGCILEGPE--PSQLK 403 (462)
T ss_dssp HHTTT--------THHH-HHHHHHHHHTT-------------------CS---SHHHHHHHHHHHHHTSSSSC--TTTTC
T ss_pred HHCCH--------HHHH-HHHHHHHHHHC-------------------CC---CHHHHHHHHHHHHHHHCCCC--HHHHH
T ss_conf 86358--------7899-99999999843-------------------89---75899999999999864876--77789
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9899999999997803603577999999999999608999
Q 000569 1091 PLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 1130 (1415)
Q Consensus 1091 ~~l~~~l~lL~~~i~q~~e~la~~g~~cl~~li~~~g~~f 1130 (1415)
..++.++..+..++..++..+...++.++.++....++.+
T Consensus 404 ~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999999669978999999999999998620114
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=42.75 Aligned_cols=305 Identities=9% Similarity=0.046 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHH--HCCHHHHHHHHHHHHHHH
Q ss_conf 5999999998613788887999999999999998410566421112555443599-9982--066489999999999999
Q 000569 766 IWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV-IVMR--KSNAVEIRELIIRCVSQM 842 (1415)
Q Consensus 766 iW~~L~~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~FQ~~fLkPfe-~im~--~~~~~eire~iL~cl~~i 842 (1415)
+...+.+.+.......+..++..|+..|..++...-.. + ..+.+.|+. .+.. ...+.++...+++++..+
T Consensus 647 ~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~--~-----~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l 719 (1230)
T 1u6g_C 647 VLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDS--L-----TAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 719 (1230)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTT--C-----CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--C-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999998678889999999999999604333--8-----9899999999987635754187899999999999
Q ss_pred HHCCCCCCC-CCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 970001245-58278999998731177-0578999999999999400686543430209999999999980788835438
Q 000569 843 VLSRVNNVK-SGWKSMFMVFTTAAYDD-HKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISL 920 (1415)
Q Consensus 843 i~~~~~~Ik-SGW~~IF~iL~~aa~~~-~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL 920 (1415)
+...+..+. ..|..+=.++....... .......-...++.+....- + ...|.+++..+..-.....+....-
T Consensus 720 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~---~---~~~~~~ll~~l~~~~~~~~~~~~~~ 793 (1230)
T 1u6g_C 720 AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT---N---NLGYMDLLRMLTGPVYSQSTALTHK 793 (1230)
T ss_dssp TTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC---T---TCSHHHHHHHHSTTTTTC----CCH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC---C---CCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 884912677767768999999975862105789999999999983478---8---7889999999850035788732000
Q ss_pred HHHHHHHHH-HHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCC-HHHH----HCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999998-78621054444677710110036999999950-0110----00366678320125399999978532079
Q 000569 921 NAIAFLRFC-ATKLAEGDLSASSSNKDKEISAKIPPASPRPV-KELK----LENGEMIDKDDHLYFWFPLLAGLSELSFD 994 (1415)
Q Consensus 921 ~AI~~L~~~-~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~----~~~~~~~~~~~~~~lW~pLL~~L~~l~~d 994 (1415)
++...+-.| +..+...+... ...-......+..+..... .... .+-+...+ +.. +-.+...+.+...|
T Consensus 794 ~~~~~~a~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~---~~~-~~~l~~~~~~~l~~ 867 (1230)
T 1u6g_C 794 QSYYSIAKCVAALTRACPKEG--PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID---LSG-QLELKSVILEAFSS 867 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCCS--HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC---CCS-CTHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC---CCC-CCCHHHHHHHHHCC
T ss_conf 104899999999998465666--899999999837887667999999999998615678---765-64189999998479
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93789999999999999741799996679999978222048864310589998999988889998602463899999999
Q 000569 995 PRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLA 1074 (1415)
Q Consensus 995 ~R~eVR~~AL~tLF~iL~~~G~~f~~~~W~~if~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~~a 1074 (1415)
+..+||..|...|=.+... .+.. ++-.++..+.. ..+. .++..++
T Consensus 868 ~~~~Vr~aAa~aLg~l~~~--------~~~~----~lp~ll~~l~~-------------------~~~~----~~~~l~a 912 (1230)
T 1u6g_C 868 PSEEVKSAASYALGSISVG--------NLPE----YLPFVLQEITS-------------------QPKR----QYLLLHS 912 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHH--------THHH----HHHHHHHHHHS-------------------CGGG----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCC--------CHHH----HHHHHHHHHHC-------------------CCHH----HHHHHHH
T ss_conf 9778999999996877526--------9998----89999998726-------------------6032----4988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999887686989999999999780360357799999999999960
Q 000569 1075 LQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1126 (1415)
Q Consensus 1075 L~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~cl~~li~~~ 1126 (1415)
++.++.- .--+.+.+..+.+|..|.+.+....+++......|+..++...
T Consensus 913 l~e~i~~--~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 913 LKEIISS--ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp HHHHHHS--SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999823--8766677669999999998733830446899998875665067
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=41.71 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 7993789999999999999741799996
Q 000569 993 FDPRPEIRKSALQVLFETLRNHGHLFSL 1020 (1415)
Q Consensus 993 ~d~R~eVR~~AL~tLF~iL~~~G~~f~~ 1020 (1415)
.|+.++||..|...+-++....|..|.+
T Consensus 639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 666 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGDLTKACFQHVKP 666 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998449999999999999981688898
Done!