BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000570
(1415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 359 bits (921), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 204/594 (34%), Positives = 337/594 (56%), Gaps = 21/594 (3%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 883 ATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+++ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVI 1058
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L + + T+LEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQI 1117
G G TID V+ +G+L + D I + + I T IR+LL P P++E+R + + ++
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 1118 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1177
AA GIKI A G++ +AG+ L VV D E V+EE + +++ + +ID GV V+A
Sbjct: 303 VAAAGIKIVAPGIDDVMAGSPLRVV---TDPEKVREEILSEIEDI--KIDTDEAGVVVKA 357
Query: 1178 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1237
TLGSLEA+++ L+ + +P+ IG V ++DV+ A + L++ + Y I+AF+VKV P
Sbjct: 358 DTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP 415
Query: 1238 EARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFN 1297
A + + +K+F ++IY L +++ ++ + + P ++++P VF
Sbjct: 416 SAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFR 475
Query: 1298 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXX 1357
+ P + GV+V+ G+ + G P+ D +G + S+++ + + +
Sbjct: 476 QSKPAIGGVEVLTGVIRQGYPLM--NDDGETVGTVESMQDKGENLKSASRGQKVAMAI-- 531
Query: 1358 SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1411
+ ++G+ D L I +LK DL+ +E L+ K+ +
Sbjct: 532 -----KDAVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEI 580
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 350 bits (899), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/502 (38%), Positives = 299/502 (59%), Gaps = 12/502 (2%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKK 62
Query: 883 ATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+++ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR 122
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
T F+VA NK+DR++GW+ P + +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVI 1058
+ D +I+P SAI+GEGIP+LL L Q+ + E+L + + T+LEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQI 1117
G G TID V+ +G+L + D I + I T IR+LL P P++E R + + ++
Sbjct: 243 TGLGXTIDAVIYDGILRKDDTIAXXTSKDVISTRIRSLLKPRPLEEXRESRKKFQKVDEV 302
Query: 1118 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1177
AA GIKI A G++ AG+ L VV D E V+EE + +++ + +ID GV V+A
Sbjct: 303 VAAAGIKIVAPGIDDVXAGSPLRVV---TDPEKVREEILSEIEDI--KIDTDEAGVVVKA 357
Query: 1178 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1237
TLGSLEA+++ L+ V I V+ IG V ++DV+ A + L++ + Y I+AF+VKV P
Sbjct: 358 DTLGSLEAVVKILRDXYVPIKVA--DIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP 415
Query: 1238 EARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFN 1297
A + + +K+F ++IY L +++ ++ + + P ++++P VF
Sbjct: 416 SAAQELKNSDIKLFQGNVIYRLXEEYEEWVRGIEEEKKKKWXEAIIKPASIRLIPKLVFR 475
Query: 1298 KKDPIVLGVDVVEGIAKVGTPI 1319
+ P + GV+V+ G+ + G P+
Sbjct: 476 QSKPAIGGVEVLTGVIRQGYPL 497
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 217/465 (46%), Gaps = 87/465 (18%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
R+P+ IMGHVD GKT LL+ IR T V GEAGGITQ IGA + EN
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN------------ 50
Query: 884 TLKVPGLLV-IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
G++ +DTPGH +FT++R+RG+ DI +LVV G+ PQTIE++ K
Sbjct: 51 -----GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP 105
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD-VQNEFNMRLVQIVTQLKEQGMNTELYY 1001
+VA+NK+D+ + + D V+NE L + G+ E +
Sbjct: 106 VVVAVNKIDK----------------PEADPDRVKNE-----------LSQYGILPEEW- 137
Query: 1002 KNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVEKLTFRNELQC-TVLEVKVI 1058
G V SA +G GI +LL +LL Q ++E R + V+E +
Sbjct: 138 -----GGESQFVHVSAKAGTGIDELLDAILL----QAEVLELKAVRKGMASGAVIESFLD 188
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH--------PMKELRVKGT 1110
+G G V++ G LH+GD IV+CG + V +R L P++ L + G
Sbjct: 189 KGRGPVATVLVREGTLHKGD-IVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGV 247
Query: 1111 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEE--AMEDMKSVMSRIDK 1168
A G ++T E LY G +++ +++ +E+M + M+ +
Sbjct: 248 --------PAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEV 299
Query: 1169 SGEGVCVQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEY 1225
+ ++A GS+EA+ L L +D VK+ + G +G + + D A+
Sbjct: 300 HEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAA------SN 353
Query: 1226 ATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL 1270
A ++ F+V+ AR++ E + + +IY+L D+ A ++ +
Sbjct: 354 AILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGM 398
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 77/129 (59%), Gaps = 16/129 (12%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
R P+ IMGHVD GKT LLD IR + V E EAGGITQ IGA
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY----------------QV 50
Query: 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 943
T+ + +DTPGHE+FT +R+RG+ + DI ILVV G+ PQT+E++N K N
Sbjct: 51 TVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI 110
Query: 944 IVALNKVDR 952
IVA+NK+D+
Sbjct: 111 IVAINKMDK 119
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
RSP+ IMGHVD GKT LLD +R T V EAGGITQ IGA + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 943
+DTPGH +F+ +R+RG+ + DI ILVV G+ QT+ES+ K +
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI 107
Query: 944 IVALNKVDR 952
++A+NK D+
Sbjct: 108 VLAINKCDK 116
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 1173 VCVQASTLGSLEALLEFL----KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATI 1228
V V+ GS+EA+L + S ++ + +G + + DV A + I
Sbjct: 342 VIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETF------HGVI 395
Query: 1229 LAFDVKVTPEARELAEELGVKIFIADIIYHLFDQF 1263
F+V ++LA + GVKI + IIY L +
Sbjct: 396 YGFNVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDL 430
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb From
Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 56/261 (21%)
Query: 830 IMGHVDTGKT---KLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKAN 882
I GH+D GKT K+L I T+ E + GIT IG + F EN R
Sbjct: 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR--------- 74
Query: 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
+ ++D PGH + + D+A++VVD G + QT E + +L N
Sbjct: 75 -------ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 127
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 1002
IV + K D + R I+K+I Q +++N
Sbjct: 128 IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS------------------------ 163
Query: 1003 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062
+I+P SA +G G+ +L L++ + + T + + + I+G G
Sbjct: 164 --------SIIPISAKTGFGVDELKNLIITTLNNAEIIRNT-ESYFKMPLDHAFPIKGAG 214
Query: 1063 TTIDVVLVNGVLHEGDQIVVC 1083
T + + G++ GD++ V
Sbjct: 215 TVVTGTINKGIVKVGDELKVL 235
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENI-RERTRELKANA-TLK 886
I+ H+D GK+ L D I GG++ +++ A + ++ RER +KA + TL
Sbjct: 9 IIAHIDHGKSTLSDRIIQI------CGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 887 VPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 940 NTEFIVALNKVD 951
+ E + LNK+D
Sbjct: 123 DLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENI-RERTRELKANA-TLK 886
I+ H+D GK+ L D I GG++ +++ A + ++ RER +KA + TL
Sbjct: 9 IIAHIDHGKSTLSDRIIQI------CGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 887 VPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 940 NTEFIVALNKVD 951
+ E + LNK+D
Sbjct: 123 DLEVVPVLNKID 134
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 829 CIMGHVDTGKTKLLD--CIRGTNVQEGEAGGITQQIGATYFPAENI-RERTRELKANAT- 884
I+ H D GKT L + + G +Q AG + + A + ++ + ER R + +
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQM--AGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 885 LKVPG----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
++ P + ++DTPGH+ F+ R D A++V+D G+E QT + +++ +MR
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 941 TEFIVALNKVDR 952
T + +NK+DR
Sbjct: 153 TPVMTFVNKMDR 164
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 820 EENLRSPICCIMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAE 870
++N+R+ CI+ HVD GK+ L D + R Q + + ++ G T +
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGIT-VKXQ 59
Query: 871 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
+R + N T K L +IDTPGH F+ SR C+ A+L++D G+E QT+
Sbjct: 60 AVRXFYKAKDGN-TYK---LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV 115
Query: 931 ESLNLLKMRNTEFIVALNKVD 951
+ ++ I +NK+D
Sbjct: 116 ANFWKAVEQDLVIIPVINKID 136
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 820 EENLRSPICCIMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAE 870
++N+R+ CI+ HVD GK+ L D + R Q + + ++ G T +
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGIT-VKMQ 59
Query: 871 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
+R + N T K L +IDTPGH F+ SR C+ A+L++D G+E QT+
Sbjct: 60 AVRMFYKAKDGN-TYK---LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV 115
Query: 931 ESLNLLKMRNTEFIVALNKVD 951
+ ++ I +NK+D
Sbjct: 116 ANFWKAVEQDLVIIPVINKID 136
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 829 CIMGHVDTGKTKLLD--CIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATL 885
I+ H D GKT L + + G +Q AG I + A + ++ E+ R + ++
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWXELEKQRGISVTTSV 74
Query: 886 -KVPG----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+ P + ++DTPGH FT R D A+ V+D G+EP+TI+ + ++R+
Sbjct: 75 XQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRH 134
Query: 941 TEFIVALNKVDR 952
T +NK DR
Sbjct: 135 TPIXTFINKXDR 146
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFI 944
++ DTPGHE +T + G+ CD+AI++VD +G++ QT I SL +K +
Sbjct: 106 FIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIK----HIV 161
Query: 945 VALNKVD 951
VA+NK D
Sbjct: 162 VAINKXD 168
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 952 R 952
R
Sbjct: 146 R 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 952 R 952
R
Sbjct: 146 R 146
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1-Alpha In Complex With Magnesium And Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1-Alpha In Complex With Magnesium And Gdp
Length = 435
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 123/304 (40%), Gaps = 60/304 (19%)
Query: 828 CCIMGHVDTGKTKLLDCI---RG----TNVQEGE--AGGITQQIGATYFPAENIRE-RTR 877
++GHVD GK+ L+ + RG V+E E A + ++ F + ++E R R
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 878 ELKANATL-----KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------L 925
+ N T K +ID PGH F G+ D AILVV G +
Sbjct: 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 128
Query: 926 EPQTIESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984
E QT E + L K M + IVA+NK+D P + ++ D ++F
Sbjct: 129 EGQTREHIILAKTMGLDQLIVAVNKMD-------LTEPPYDEKRYKEIVDQVSKF----- 176
Query: 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL-- 1042
++ G NT NK R VP A SG+ I + + T+ E L
Sbjct: 177 -----MRSYGFNT-----NKVR-----FVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ 221
Query: 1043 ------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096
L+ + +V I G GT + +GVL GD+IV + V +R++
Sbjct: 222 LELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVF--MPAGKVGEVRSI 279
Query: 1097 LTPH 1100
T H
Sbjct: 280 ETHH 283
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGAT 865
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 866 YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 925
+E E +E+K + +ID+PGH F++ + + D A++VVD + G+
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 926 EPQTIESLNLLKMRNTEFIVALNKVDR 952
QT L + +V +NKVDR
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGAT 865
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 866 YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 925
+E E +E+K + +ID+PGH F++ + + D A++VVD + G+
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 926 EPQTIESLNLLKMRNTEFIVALNKVDR 952
QT L + +V +NKVDR
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Query: 830 IMGHVDTGKTKLLDCI------------------RGTNVQEGEAGGITQQIGATYFPAEN 871
++ HVD GKT L + + R N GIT Q G T F EN
Sbjct: 7 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 66
Query: 872 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 931
K N +IDTPGH F R + D AIL++ G++ QT
Sbjct: 67 T-------KVN---------IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI 110
Query: 932 SLNLLKMRNTEFIVALNKVDR 952
+ L+ I +NK+D+
Sbjct: 111 LFHALRKMGIPTIFFINKIDQ 131
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 105/287 (36%), Gaps = 56/287 (19%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANA--- 883
+GHVD GKT L I + G GA + E I ER R + NA
Sbjct: 20 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 70
Query: 884 --TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 941
+ D PGH + G+ D ILVV G PQT E L L +
Sbjct: 71 EYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGV 130
Query: 942 EFIVA-LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
E +V +NK D VQ+ + LV++ +++E + TE
Sbjct: 131 EHVVVYVNKADA----------------------VQDSEXVELVEL--EIRE--LLTEFG 164
Query: 1001 YKNKDRGETFNIVPTSAISG--EGIPDLLLLLVQWTQKTM-----VEKLTFRNELQCTVL 1053
YK GE I+ SA+ + P+L L VQ + V V
Sbjct: 165 YK----GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVE 220
Query: 1054 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1100
V I G GT + L G+L +GD+ G I T + + H
Sbjct: 221 SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFH 267
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTR-----ELK 880
IM H+D GKT + I G +IG T+ A + +E+ R
Sbjct: 15 IMAHIDAGKTTTTERILYYT-------GRIHKIGETHEGASQMDWMEQEQDRGITITSAA 67
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
A + + +IDTPGH FT R + D A+ V+D G+EPQT
Sbjct: 68 TTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYG 127
Query: 941 TEFIVALNKVDRL 953
IV +NK+D+L
Sbjct: 128 VPRIVFVNKMDKL 140
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--- 884
I H+D GKT + I + + G + + F E RER + A T
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 944
K + +IDTPGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 945 VALNKVDR 952
NK+D+
Sbjct: 134 AFANKMDK 141
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
+IDTPGH FT R + D A+ V+D G+EPQT IV +NK+D
Sbjct: 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 952 RL 953
+L
Sbjct: 139 KL 140
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 108/281 (38%), Gaps = 54/281 (19%)
Query: 830 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK 886
I H+D GKT + I G N + GE AT E +ER + + AT
Sbjct: 15 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 70
Query: 887 VPGLL----------VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
+ +IDTPGH FT R + D A++V + G++PQ+
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV-QNEFNMRL--------VQIV 987
I +NK+DR+ A +K + Q T + N ++L +V
Sbjct: 131 NKYKVPRIAFVNKMDRM-------GANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVV 183
Query: 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP-DLLLLLVQWTQKTMVEKLTFRN 1046
+K + +N + + D+G TF E IP D++ L +W Q +
Sbjct: 184 DLVKMKAIN----WNDADQGVTFEY--------EDIPADMVELANEWHQNLIESAAEASE 231
Query: 1047 ELQCTVL---EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1084
EL L E+ E G VL N ++ +V CG
Sbjct: 232 ELMEKYLGGEELTEAEIKGALRQRVLNNEII-----LVTCG 267
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +IDTPGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +IDTPGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +IDTPGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +IDTPGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And
The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 108/281 (38%), Gaps = 54/281 (19%)
Query: 830 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK 886
I H+D GKT + I G N + GE AT E +ER + + AT
Sbjct: 14 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 69
Query: 887 VPGLL----------VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
+ +IDTPGH FT R + D A++V + G++PQ+
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV-QNEFNMRLV--------QIV 987
I +NK+DR+ A +K + Q T + N ++L +V
Sbjct: 130 NKYKVPRIAFVNKMDRM-------GANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVV 182
Query: 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP-DLLLLLVQWTQKTMVEKLTFRN 1046
+K + +N + + D+G TF E IP D++ L +W Q +
Sbjct: 183 DLVKMKAIN----WNDADQGVTFEY--------EDIPADMVELANEWHQNLIESAAEASE 230
Query: 1047 ELQCTVL---EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1084
EL L E+ E G VL N ++ +V CG
Sbjct: 231 ELMEKYLGGEELTEAEIKGALRQRVLNNEII-----LVTCG 266
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 873
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 8 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 59
Query: 874 ERTRELKANATLKVP----------GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 923
+ + + + P + ID+PGHE+ G+ L D AILV+
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE 119
Query: 924 GL-EPQTIESLNLLKMRNTE-FIVALNKVD 951
PQT E L L++ + I+A NK++
Sbjct: 120 PCPRPQTREHLMALQIIGQKNIIIAQNKIE 149
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 814 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG---ATYFPA 869
A PK Q E N+ ++GHVD GKT L+ I G + + G IG + P
Sbjct: 1 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPE 54
Query: 870 ENIRERTRELKANATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 925
+ E + K+ + P L ID PGHE G+ L D AILVV
Sbjct: 55 AYVTEPS--CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 112
Query: 926 -EPQTIE---SLNLLKMRNTEFIVALNKVD 951
+PQT E +L ++ ++N I+ NKVD
Sbjct: 113 PQPQTREHFVALGIIGVKN--LIIVQNKVD 140
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 116/292 (39%), Gaps = 79/292 (27%)
Query: 830 IMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-- 880
++GHVD GK+ L L+ + + +++ + ++ +G + F I ++T E +
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERER 229
Query: 881 --------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HGL 925
++ + ++D PGH F G D+AIL VD L
Sbjct: 230 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 289
Query: 926 EPQTIESLNL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
+ QT E + L L + N I+A+NK+D + W QQ R
Sbjct: 290 DGQTKEHMLLASSLGIHN--LIIAMNKMDNV-DW------------SQQ----------R 324
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL--LVQW------- 1033
+I ++L ++ + N N VP S SGEG+ + + QW
Sbjct: 325 FEEIKSKLLPYLVDIGFFEDN------INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLM 378
Query: 1034 -TQKTMVEKLTFRNE-------LQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1077
T + K++ NE +VLE +I T+ D+ LV+G L G
Sbjct: 379 STLENAAFKISKENEGINKDDPFLFSVLE--IIPSKKTSNDLALVSGKLESG 428
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
Length = 397
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 104/283 (36%), Gaps = 56/283 (19%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANA--- 883
+GHVD GKT L I + G GA + E I ER R + NA
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 59
Query: 884 --TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 941
+ D PGH + G+ D ILVV G PQT E L L +
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 942 EFIVA-LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
E +V +NK D VQ+ + LV++ +++E + TE
Sbjct: 120 EHVVVYVNKADA----------------------VQDSEMVELVEL--EIRE--LLTEFG 153
Query: 1001 YKNKDRGETFNIVPTSAISG--EGIPDLLLLLVQWTQKTM-----VEKLTFRNELQCTVL 1053
YK GE I+ SA+ + P+L L VQ + V V
Sbjct: 154 YK----GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVE 209
Query: 1054 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096
V I G GT + L G+L +GD+ G I T + +
Sbjct: 210 SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI 252
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
Length = 437
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 94/246 (38%), Gaps = 59/246 (23%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE-F 943
+ID PGH F G+ D AILVV G E QT E L L + E
Sbjct: 88 IIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI 147
Query: 944 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN 1003
IVA+NK+D AP V ++ + + V + ++ M Y +
Sbjct: 148 IVAVNKMD----------APDV------------NYDQKRYEFVVSVLKKFMKGLGYQVD 185
Query: 1004 KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEV 1055
K +P SA G+ + + + + T+VE L L+ V V
Sbjct: 186 K-----IPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNV 240
Query: 1056 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1115
I G GT + GVL GD++V + P + E+R +H++
Sbjct: 241 YSIPGAGTVPVGRVETGVLRVGDKVV--------------FMPPGVVGEVR--SIEMHYQ 284
Query: 1116 QIKAAQ 1121
Q++ A+
Sbjct: 285 QLQQAE 290
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 94/248 (37%), Gaps = 59/248 (23%)
Query: 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE 942
+ID PGH F G+ D AILVV G E QT E L L + E
Sbjct: 89 FTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIE 148
Query: 943 -FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY 1001
IVA+NK+D AP V ++ + + V + ++ M Y
Sbjct: 149 QIIVAVNKMD----------APDV------------NYDQKRYEFVVSVLKKFMKGLGYQ 186
Query: 1002 KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--------TFRNELQCTVL 1053
+K +P SA G+ + + + + T+VE L L+ V
Sbjct: 187 VDK-----IPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQ 241
Query: 1054 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1113
V I G GT + GVL GD++V + P + E+R +H
Sbjct: 242 NVYSIPGAGTVPVGRVETGVLRVGDKVV--------------FMPPGVVGEVR--SIEMH 285
Query: 1114 HKQIKAAQ 1121
++Q++ A+
Sbjct: 286 YQQLQQAE 293
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTR-----ELK 880
IM H+D GKT + I G +IG T+ A + +E+ R
Sbjct: 15 IMAHIDAGKTTTTERILYYT-------GRIHKIGETHEGASQMDWMEQEQDRGITITSAA 67
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
A + + +IDTPGH T R + D A+ V+D G+EPQT
Sbjct: 68 TTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYG 127
Query: 941 TEFIVALNKVDRL 953
IV +NK+D+L
Sbjct: 128 VPRIVFVNKMDKL 140
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 873
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 874 ERTRELKANATLKVP----------GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 923
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 924 GL-EPQTIESLNLLKMRNTE-FIVALNKVD 951
PQT E L L++ + I+A NK++
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIE 148
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 873
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 874 ERTRELKANATLKVP----------GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 923
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 924 GL-EPQTIESLNLLKMRNTE-FIVALNKVD 951
PQT E L L++ + I+A NK++
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIE 148
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form),
A Translational Gtpase Involved In Rna Quality Control
Pathways And Interacting With Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form),
A Translational Gtpase Involved In Rna Quality Control
Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 79/292 (27%)
Query: 830 IMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-- 880
++GHVD GK+ L L+ + + +++ + ++ +G + F I ++T E +
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERER 95
Query: 881 --------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HGL 925
++ + ++D PGH F G D+AIL VD L
Sbjct: 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 155
Query: 926 EPQTIESLNL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
+ QT E + L L + N I+A+NK+D N D + R
Sbjct: 156 DGQTKEHMLLASSLGIHN--LIIAMNKMD--------------------NVDWSQQ---R 190
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL--LVQW------- 1033
+I ++L ++ + N N VP S SGEG+ + + QW
Sbjct: 191 FEEIKSKLLPYLVDIGFFEDN------INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLM 244
Query: 1034 -TQKTMVEKLTFRNE-------LQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1077
T + K++ NE +VLE +I T+ D+ LV+G L G
Sbjct: 245 STLENAAFKISKENEGINKDDPFLFSVLE--IIPSKKTSNDLALVSGKLESG 294
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 33/161 (20%)
Query: 814 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRG---TNVQEGEAGGITQQIGATYFPA 869
A PK Q E N+ ++GHVD GKT L+ I G + E G+T ++G +
Sbjct: 2 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLG---YAE 53
Query: 870 ENIRERTRELKANATLKVPG---------------LLVIDTPGHESFTNLRSRGSGLCDI 914
NI K A + P + ID PGHE G+ L D
Sbjct: 54 TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDG 113
Query: 915 AILVVDIMHGL-EPQTIE---SLNLLKMRNTEFIVALNKVD 951
AILVV +PQT E +L ++ ++N I+ NKVD
Sbjct: 114 AILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNKVD 152
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 873
+QAE N+ +GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNIGX-----VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 874 ERTRELKANATLKVP----------GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 923
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Query: 924 GL-EPQTIESLNLLK-MRNTEFIVALNKVD 951
PQT E L L+ + I+A NK++
Sbjct: 119 PCPRPQTREHLXALQIIGQKNIIIAQNKIE 148
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 33/161 (20%)
Query: 814 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRG---TNVQEGEAGGITQQIGATYFPA 869
A PK Q E N+ ++GHVD GKT L+ I G + E G+T ++G +
Sbjct: 1 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLG---YAE 52
Query: 870 ENIRERTRELKANATLKVPG---------------LLVIDTPGHESFTNLRSRGSGLCDI 914
NI K A + P + ID PGHE G+ L D
Sbjct: 53 TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDG 112
Query: 915 AILVVDIMHGL-EPQTIE---SLNLLKMRNTEFIVALNKVD 951
AILVV +PQT E +L ++ ++N I+ NKVD
Sbjct: 113 AILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNKVD 151
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +ID PGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 886
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ +ID PGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 947 LNKVDR 952
NK+D+
Sbjct: 136 ANKMDK 141
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
+IDTPGH T R + D A+ V+D G+EPQT IV +NK+D
Sbjct: 79 IIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 952 RL 953
+L
Sbjct: 139 KL 140
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 887
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 356
Query: 888 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 946 A-LNKVD 951
LNK D
Sbjct: 417 VFLNKCD 423
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 830 IMGHVDTGKTKLLDCI-----RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884
I H+D GKT + I R + E G T E RER + A T
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDF------MEQERERGITITAAVT 70
Query: 885 ---LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 941
K + +ID PGH FT R + D AI+V D G+EPQ+ +
Sbjct: 71 TCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 942 EFIVALNKVDR 952
I NK+D+
Sbjct: 131 PRIAFANKMDK 141
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 887
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 356
Query: 888 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 946 A-LNKVD 951
LNK D
Sbjct: 417 VFLNKCD 423
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 947 -LNKVD 951
LNK D
Sbjct: 133 FLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 947 -LNKVD 951
LNK D
Sbjct: 133 FLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 947 -LNKVD 951
LNK D
Sbjct: 133 FLNKCD 138
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 818 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRE 874
QAE N+ ++GHVD GKT L + G E GI+ ++G Y E IR+
Sbjct: 6 QAEVNIG-----MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG--YADCE-IRK 57
Query: 875 RTRELKANATLKVPGLLV----------IDTPGHESFTNLRSRGSGLCDIAILVVDIMHG 924
+ + P L +D+PGHE+ G+ L D AILV+
Sbjct: 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117
Query: 925 L-EPQTIESLNLLKMRNTE-FIVALNKVD 951
+PQT E L L++ + I+ NK+D
Sbjct: 118 CPQPQTKEHLMALEILGIDKIIIVQNKID 146
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 76 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 947 -LNKVD 951
LNK D
Sbjct: 134 FLNKCD 139
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890
+GHVD GKT L I T V GG A I T ++ + +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGG----------AARGITINTSHVEYDTPTR--HY 62
Query: 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNK 949
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK
Sbjct: 63 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 122
Query: 950 VD 951
D
Sbjct: 123 CD 124
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 76 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 947 -LNKVD 951
LNK D
Sbjct: 134 FLNKCD 139
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 65/155 (41%), Gaps = 26/155 (16%)
Query: 814 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF----- 867
A PK Q E N+ ++GHVD GKT L+ I G + I T
Sbjct: 1 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCES 55
Query: 868 ---PAENIRERTRELKANATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVD 920
P + E + K+ + P L ID PGHE G+ L D AILVV
Sbjct: 56 CKKPEAYVTEPS--CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 113
Query: 921 IMHGL-EPQTIE---SLNLLKMRNTEFIVALNKVD 951
+PQT E +L ++ ++N I+ NKVD
Sbjct: 114 ANEPFPQPQTREHFVALGIIGVKN--LIIVQNKVD 146
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI----GATYFPAENIRERTRELKANATLK 886
+GHVD GKT L I T V GG + A A I T ++ + +
Sbjct: 9 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 66
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 67 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 124
Query: 947 -LNKVD 951
LNK D
Sbjct: 125 FLNKCD 130
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its
Role In No-Go Decay
Length = 592
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 59/238 (24%)
Query: 814 ATPKQAEENLRSPIC--CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--------IG 863
+ P+ E++ P+ + GHVD+GK+ +L I + GE + Q G
Sbjct: 164 SVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIM---FELGEINSRSMQKLHNEAANSG 220
Query: 864 ATYFPAENIRERTRELKANA-TLKVPGLL---------VIDTPGHESFTNLRSRGSGLCD 913
F + + T E +A T+ V + D PGH F + G+ D
Sbjct: 221 KGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSAD 280
Query: 914 IAILVVDIMHG------LEP-QTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIV 965
A+LVVD LE QT E LL+ +E +V++NK+D L W R
Sbjct: 281 FAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLD-LMSWSEDR----- 334
Query: 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023
Q+ ++ ++F +++V T + VP SAISG +
Sbjct: 335 ---FQEIKNIVSDFLIKMVGFKTS-------------------NVHFVPISAISGTNL 370
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 81 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +IV +NKVD
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
+IDTPGH FT R + D AI+V D G+EPQ+ + I NK+D
Sbjct: 48 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMD 107
Query: 952 R 952
+
Sbjct: 108 K 108
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
VIDTPGH FT R + D A++V G+EPQ+ IV +NK+D
Sbjct: 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMD 148
Query: 952 R 952
R
Sbjct: 149 R 149
>pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus
Stearothermophilus Translation Initiation Factor If2
Length = 135
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 1142 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS---DAVKIP 1198
V DD E +K+ M+++ + V+A GS+EAL+ L+ + V++
Sbjct: 25 VSLDDLFEQIKQGEMKEL------------NLIVKADVQGSVEALVAALQKIDVEGVRVK 72
Query: 1199 VSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYH 1258
+ ++G + + D+ A+ A ++ F+V+ A+ AE V I + IIY+
Sbjct: 73 IIHAAVGAITESDISLATA------SNAIVIGFNVRPDANAKRAAESEKVDIRLHRIIYN 126
Query: 1259 LFDQFTA 1265
+ ++ A
Sbjct: 127 VIEEIEA 133
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 79/292 (27%)
Query: 830 IMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-- 880
++GHVD GK+ L L+ + + +++ + ++ G + F I ++T E +
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRE--SETXGKSSFKFAWIXDQTNEERER 95
Query: 881 --------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HGL 925
++ + ++D PGH F G D AIL VD L
Sbjct: 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDL 155
Query: 926 EPQTIESLNL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
+ QT E L L + N I+A NK D N D + R
Sbjct: 156 DGQTKEHXLLASSLGIHN--LIIAXNKXD--------------------NVDWSQQ---R 190
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL--LVQW------- 1033
+I ++L ++ + N N VP S SGEG+ + + QW
Sbjct: 191 FEEIKSKLLPYLVDIGFFEDN------INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLX 244
Query: 1034 -TQKTMVEKLTFRNE-------LQCTVLEVKVIEGHGTTIDVVLVNGVLHEG 1077
T + K++ NE +VLE +I T+ D+ LV+G L G
Sbjct: 245 STLENAAFKISKENEGINKDDPFLFSVLE--IIPSKKTSNDLALVSGKLESG 294
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKVD 951
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 25/137 (18%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
I+G + GK+ LL+ + GT V I+ + G T R R L
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSI-----ISPKAGTT---------RMRVLGVKNIPNE 58
Query: 888 PGLLVIDTPG----------HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL 936
++ +DTPG S + + D+ + ++D G P+ E N +
Sbjct: 59 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118
Query: 937 KMRNTEFIVALNKVDRL 953
K N IV +NK+D++
Sbjct: 119 KPLNKPVIVVINKIDKI 135
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 25/137 (18%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
I+G + GK+ LL+ + GT V I+ + G T R R L
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSI-----ISPKAGTT---------RMRVLGVKNIPNE 57
Query: 888 PGLLVIDTPG----------HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL 936
++ +DTPG S + + D+ + ++D G P+ E N +
Sbjct: 58 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 117
Query: 937 KMRNTEFIVALNKVDRL 953
K N IV +NK+D++
Sbjct: 118 KPLNKPVIVVINKIDKI 134
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVV-----DIMHGL--EPQTIE-SLNLLKMRNT 941
+ VID PGH F G+ D AIL++ + G+ + QT E +L +
Sbjct: 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVR 146
Query: 942 EFIVALNKVDRLYGWKTCRNAPIVK 966
+ IVA+NK+D + W R IVK
Sbjct: 147 QLIVAVNKMDSVK-WDESRFQEIVK 170
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome
Length = 405
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 63/264 (23%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 831 MGHVDTGKTKLLDCI------RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884
+GHVD GKT L + NV+ + G I + A A I T ++
Sbjct: 17 IGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDK---AREERARGITINTAHVEYETA 73
Query: 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 944
+ +D GH + G+ D AILVV G QT E + L + +I
Sbjct: 74 KR--HYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYI 131
Query: 945 VA-LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN 1003
V +NKVD + + ++ ++ + D+ N++ R ++ + E +KN
Sbjct: 132 VVFMNKVDMV------DDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKN 185
Query: 1004 K--DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061
+ RGE + + I +LL + ++ +T V + R ++ V +V I G
Sbjct: 186 RKTKRGENEWV--------DKIWELLDAIDEYI-RTRVRDVDKRFLMR--VEDVFTITGR 234
Query: 1062 GTTIDVVLVNGVLHEGDQIVVCGL 1085
GT + G + GD++ + GL
Sbjct: 235 GTVATGRIERGKVKVGDEVEIVGL 258
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 851 QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 910
QE G T ++G YF E K + T ++D PGH+SF G+
Sbjct: 74 QEERDKGKTVEVGRAYFETE---------KKHFT-------ILDAPGHKSFVPNMIGGAS 117
Query: 911 LCDIAILVV-----DIMHGLEP--QTIESLNLLKMRNTE-FIVALNKVD 951
D+A+LV+ + G E QT E L K + IV +NK+D
Sbjct: 118 QADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 166
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 24/137 (17%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 881
+++S ++G+ + GK+ + + + G NV G G+T + ++ E +
Sbjct: 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT------------VEKKEGEFEY 51
Query: 882 NATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMH--GLEPQTIESLN 934
N V+D PG S T + +R + + LVV+I+ LE +L
Sbjct: 52 NGE----KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQ 107
Query: 935 LLKMRNTEFIVALNKVD 951
L++M ++ALNK+D
Sbjct: 108 LMEM-GANLLLALNKMD 123
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 49/177 (27%)
Query: 857 GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAI 916
G T ++G YF E+ R ++D PGH+ + G+ DI +
Sbjct: 106 GKTVEVGRAYFETEHRR----------------FSLLDAPGHKGYVTNMINGASQADIGV 149
Query: 917 LVVDIMHG-LEP------QTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKAI 968
LV+ G E QT E L + + +V +NK+D P V+
Sbjct: 150 LVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE----------PSVQWS 199
Query: 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025
+++ + ++ +M L ++ G N++ K +P SA +G+ + D
Sbjct: 200 EERYKECVDKLSMFLRRVA------GYNSKTDVK---------YMPVSAYTGQNVKD 241
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE-RTRELKANATLK 886
++G+ + GKT + + + G G G+T + E I E R +E
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVE------KKEGIMEYREKE-------- 51
Query: 887 VPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKMR 939
LV+D PG S T L +R L A ++VDI+ L +L L +M
Sbjct: 52 ---FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEME 108
Query: 940 NTEFIVALNKVDRL 953
I+ LNK D L
Sbjct: 109 VKNIILVLNKFDLL 122
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
++S ++G+ + GK+ + + + G NV G G+T + ++ E + N
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT------------VEKKEGEFEYN 48
Query: 883 ATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNL 935
V+D PG S T + +R + + LVV+I+ LE +L L
Sbjct: 49 G----EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQL 104
Query: 936 LKMRNTEFIVALNKVD 951
++M ++ALNK+D
Sbjct: 105 MEM-GANLLLALNKMD 119
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
++S ++G+ + GK+ + + + G NV G G+T + ++ E + N
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT------------VEKKEGEFEYN 48
Query: 883 ATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNL 935
V+D PG S T + +R + + LVV+I+ LE +L L
Sbjct: 49 G----EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQL 104
Query: 936 LKMRNTEFIVALNKVD 951
++M ++ALNK+D
Sbjct: 105 MEM-GANLLLALNKMD 119
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 989 QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030
++ E+ E + K + + I+PTS+++GEGI +LL L+
Sbjct: 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,068,610
Number of Sequences: 62578
Number of extensions: 914368
Number of successful extensions: 1841
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 119
length of query: 1415
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1304
effective length of database: 8,027,179
effective search space: 10467441416
effective search space used: 10467441416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)