Query 000570
Match_columns 1415
No_of_seqs 812 out of 4517
Neff 6.3
Searched_HMMs 46136
Date Mon Apr 1 19:41:50 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 1E-186 3E-191 1625.3 68.2 850 498-1415 200-1064(1064)
2 TIGR00491 aIF-2 translation in 100.0 7E-105 2E-109 983.0 56.7 575 822-1410 1-580 (590)
3 PRK14845 translation initiatio 100.0 7E-103 2E-107 1000.0 55.2 566 827-1409 467-1037(1049)
4 PRK04004 translation initiatio 100.0 9E-102 2E-106 959.5 57.5 577 821-1411 2-583 (586)
5 COG0532 InfB Translation initi 100.0 1.5E-96 3E-101 867.6 45.6 501 822-1390 2-508 (509)
6 KOG1145 Mitochondrial translat 100.0 5.3E-84 1.1E-88 747.1 39.4 479 820-1384 148-671 (683)
7 TIGR00487 IF-2 translation ini 100.0 3.9E-78 8.5E-83 747.1 44.7 474 821-1382 83-579 (587)
8 PRK05306 infB translation init 100.0 9.9E-77 2.1E-81 748.2 47.2 472 821-1382 286-781 (787)
9 CHL00189 infB translation init 100.0 4.2E-75 9.2E-80 727.1 44.0 474 822-1381 241-734 (742)
10 COG5256 TEF1 Translation elong 100.0 3.3E-31 7.1E-36 304.8 21.3 259 826-1145 8-316 (428)
11 PTZ00141 elongation factor 1- 100.0 4.1E-30 8.8E-35 312.1 23.2 259 826-1144 8-317 (446)
12 PRK10512 selenocysteinyl-tRNA- 100.0 8.8E-30 1.9E-34 318.8 25.1 251 826-1144 1-259 (614)
13 TIGR00475 selB selenocysteine- 100.0 1.5E-29 3.3E-34 315.9 25.7 254 826-1145 1-261 (581)
14 PLN00043 elongation factor 1-a 100.0 1.2E-29 2.6E-34 307.8 22.9 258 827-1144 9-317 (447)
15 KOG0462 Elongation factor-type 100.0 5.7E-30 1.2E-34 299.2 17.8 224 820-1099 57-296 (650)
16 PRK12736 elongation factor Tu; 100.0 4E-29 8.6E-34 300.1 24.9 256 826-1144 13-296 (394)
17 PLN03127 Elongation factor Tu; 100.0 1E-28 2.2E-33 299.5 25.6 259 825-1144 61-349 (447)
18 PLN03126 Elongation factor Tu; 100.0 6.9E-29 1.5E-33 302.3 21.4 256 826-1144 82-375 (478)
19 PRK12735 elongation factor Tu; 100.0 2E-28 4.3E-33 294.3 25.0 256 826-1144 13-298 (396)
20 PTZ00327 eukaryotic translatio 100.0 9.2E-29 2E-33 299.3 22.1 282 824-1144 33-350 (460)
21 CHL00071 tufA elongation facto 100.0 2.4E-28 5.2E-33 294.7 25.0 256 826-1144 13-306 (409)
22 PRK00049 elongation factor Tu; 100.0 3.2E-28 7E-33 292.3 25.2 256 826-1144 13-298 (396)
23 PRK12317 elongation factor 1-a 100.0 2.5E-28 5.4E-33 296.4 22.7 258 826-1144 7-309 (425)
24 TIGR00485 EF-Tu translation el 100.0 8.2E-28 1.8E-32 289.0 26.2 259 825-1143 12-295 (394)
25 TIGR01394 TypA_BipA GTP-bindin 100.0 2.3E-28 5E-33 304.7 21.9 224 823-1097 1-251 (594)
26 KOG0460 Mitochondrial translat 100.0 1.3E-28 2.8E-33 273.7 16.3 257 827-1146 56-342 (449)
27 COG0050 TufB GTPases - transla 100.0 3E-28 6.5E-33 266.6 17.8 258 827-1145 14-297 (394)
28 COG3276 SelB Selenocysteine-sp 100.0 1.6E-27 3.5E-32 276.3 21.8 248 827-1145 2-256 (447)
29 COG1217 TypA Predicted membran 100.0 1.1E-27 2.4E-32 275.2 18.9 259 821-1139 3-288 (603)
30 TIGR00483 EF-1_alpha translati 100.0 2.6E-27 5.7E-32 287.5 22.8 258 826-1144 8-311 (426)
31 COG0481 LepA Membrane GTPase L 100.0 1.9E-27 4.1E-32 274.1 20.1 215 819-1086 5-234 (603)
32 PRK10218 GTP-binding protein; 99.9 4.8E-27 1E-31 292.5 20.5 215 821-1086 3-243 (607)
33 TIGR02034 CysN sulfate adenyly 99.9 4.3E-26 9.4E-31 274.8 21.7 254 827-1145 2-300 (406)
34 TIGR03680 eif2g_arch translati 99.9 5.9E-26 1.3E-30 273.7 22.0 225 825-1085 4-251 (406)
35 PRK05433 GTP-binding protein L 99.9 6.6E-26 1.4E-30 283.7 21.1 213 821-1086 5-232 (600)
36 PRK05124 cysN sulfate adenylyl 99.9 1.7E-25 3.7E-30 273.7 22.9 255 826-1144 28-327 (474)
37 TIGR01393 lepA GTP-binding pro 99.9 1.2E-25 2.6E-30 281.2 21.4 212 822-1086 2-228 (595)
38 COG2895 CysN GTPases - Sulfate 99.9 6.4E-26 1.4E-30 254.3 15.5 223 828-1099 9-273 (431)
39 COG0480 FusA Translation elong 99.9 2.7E-25 5.9E-30 278.2 21.7 283 820-1143 7-392 (697)
40 PRK04000 translation initiatio 99.9 3.3E-25 7.2E-30 267.3 21.6 255 826-1120 10-287 (411)
41 KOG0458 Elongation factor 1 al 99.9 4.6E-25 9.9E-30 261.6 21.8 226 824-1096 176-452 (603)
42 PF00009 GTP_EFTU: Elongation 99.9 1.1E-25 2.3E-30 243.8 13.5 164 827-1035 5-187 (188)
43 COG5258 GTPBP1 GTPase [General 99.9 5E-25 1.1E-29 248.2 18.0 281 826-1144 118-436 (527)
44 PRK00007 elongation factor G; 99.9 4.5E-24 9.8E-29 272.7 23.6 240 819-1083 6-345 (693)
45 PRK05506 bifunctional sulfate 99.9 3.3E-24 7.2E-29 271.9 20.9 270 827-1145 26-324 (632)
46 TIGR00484 EF-G translation elo 99.9 1.3E-23 2.8E-28 268.8 23.5 241 818-1083 5-343 (689)
47 PRK12739 elongation factor G; 99.9 1.2E-23 2.7E-28 268.9 23.2 239 820-1083 5-342 (691)
48 PRK13351 elongation factor G; 99.9 1.7E-23 3.7E-28 268.1 22.6 243 819-1086 4-344 (687)
49 PRK00741 prfC peptide chain re 99.9 2.4E-23 5.1E-28 257.0 22.0 295 821-1140 8-377 (526)
50 PRK07560 elongation factor EF- 99.9 1.9E-23 4.1E-28 268.5 21.0 239 820-1086 17-329 (731)
51 KOG0465 Mitochondrial elongati 99.9 2.2E-23 4.8E-28 246.5 19.5 232 820-1083 36-373 (721)
52 KOG0461 Selenocysteine-specifi 99.9 3E-23 6.5E-28 230.7 18.1 241 826-1120 8-259 (522)
53 TIGR00503 prfC peptide chain r 99.9 1.4E-22 3E-27 250.3 23.9 296 821-1140 9-378 (527)
54 cd01884 EF_Tu EF-Tu subfamily. 99.9 8.5E-23 1.8E-27 222.8 16.1 154 826-1025 3-173 (195)
55 KOG0463 GTP-binding protein GP 99.9 2.9E-23 6.2E-28 232.2 7.6 287 825-1145 133-456 (641)
56 PRK12740 elongation factor G; 99.9 2.2E-21 4.7E-26 248.3 23.0 232 831-1085 1-326 (668)
57 TIGR00490 aEF-2 translation el 99.9 4.4E-22 9.6E-27 255.3 16.0 237 821-1086 17-328 (720)
58 COG5257 GCD11 Translation init 99.9 2.4E-22 5.3E-27 223.0 10.8 223 826-1084 11-256 (415)
59 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-21 5.1E-26 203.9 16.5 165 826-1034 1-165 (168)
60 PLN00116 translation elongatio 99.9 3E-21 6.5E-26 250.9 20.3 132 820-953 16-163 (843)
61 cd01886 EF-G Elongation factor 99.8 1.4E-20 3E-25 215.2 17.6 111 827-953 1-129 (270)
62 COG4108 PrfC Peptide chain rel 99.8 1.7E-20 3.6E-25 215.9 17.8 255 827-1085 14-335 (528)
63 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.2E-20 2.7E-25 210.1 15.5 184 828-1032 2-220 (224)
64 KOG0464 Elongation factor G [T 99.8 2E-21 4.2E-26 219.4 9.0 290 816-1142 30-418 (753)
65 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-20 3.5E-25 206.2 15.5 175 827-1034 2-198 (203)
66 PTZ00416 elongation factor 2; 99.8 4E-20 8.6E-25 240.1 20.8 126 820-953 16-157 (836)
67 cd04166 CysN_ATPS CysN_ATPS su 99.8 6.7E-21 1.5E-25 210.0 11.5 172 827-1045 1-204 (208)
68 cd04168 TetM_like Tet(M)-like 99.8 2.5E-20 5.4E-25 209.5 15.4 194 827-1035 1-235 (237)
69 cd01883 EF1_alpha Eukaryotic e 99.8 9.7E-21 2.1E-25 210.4 11.8 174 827-1044 1-214 (219)
70 KOG1143 Predicted translation 99.8 2E-20 4.4E-25 209.7 13.8 282 827-1145 169-491 (591)
71 cd04171 SelB SelB subfamily. 99.8 8.5E-20 1.8E-24 190.8 16.5 158 827-1032 2-163 (164)
72 cd01889 SelB_euk SelB subfamil 99.8 5.7E-20 1.2E-24 199.7 15.7 180 827-1037 2-188 (192)
73 KOG0459 Polypeptide release fa 99.8 1.6E-20 3.5E-25 213.8 10.9 263 824-1147 78-392 (501)
74 cd04169 RF3 RF3 subfamily. Pe 99.8 6.6E-20 1.4E-24 209.4 15.2 129 823-953 2-136 (267)
75 cd03703 aeIF5B_II aeIF5B_II: T 99.8 2.5E-20 5.4E-25 182.0 9.7 109 1048-1156 1-109 (110)
76 PF11987 IF-2: Translation-ini 99.8 1.2E-20 2.6E-25 185.9 7.5 92 1168-1265 14-108 (108)
77 cd01885 EF2 EF2 (for archaea a 99.8 7.5E-20 1.6E-24 203.3 13.0 120 828-953 3-138 (222)
78 cd01890 LepA LepA subfamily. 99.8 1.2E-19 2.6E-24 193.5 13.1 158 828-1034 3-176 (179)
79 cd01891 TypA_BipA TypA (tyrosi 99.8 3.9E-19 8.4E-24 193.4 15.0 157 823-1027 2-174 (194)
80 COG1159 Era GTPase [General fu 99.8 3.9E-18 8.5E-23 191.4 19.3 218 822-1093 3-255 (298)
81 cd00881 GTP_translation_factor 99.8 1.2E-18 2.6E-23 186.4 14.4 170 827-1034 1-186 (189)
82 cd04170 EF-G_bact Elongation f 99.8 3.8E-18 8.3E-23 195.3 16.8 125 827-953 1-129 (268)
83 cd04167 Snu114p Snu114p subfam 99.8 2.7E-18 5.8E-23 189.9 13.9 171 828-1024 3-192 (213)
84 KOG1144 Translation initiation 99.8 5.5E-17 1.2E-21 194.5 25.7 85 510-598 219-305 (1064)
85 TIGR00436 era GTP-binding prot 99.8 2.8E-17 6.1E-22 188.4 21.8 212 827-1095 2-249 (270)
86 PRK15494 era GTPase Era; Provi 99.8 1.9E-17 4.1E-22 195.5 20.6 217 823-1096 50-302 (339)
87 PRK00089 era GTPase Era; Revie 99.8 5.6E-17 1.2E-21 187.9 22.9 217 822-1095 2-254 (292)
88 cd01894 EngA1 EngA1 subfamily. 99.7 2E-17 4.3E-22 171.4 13.7 147 829-1033 1-156 (157)
89 TIGR03594 GTPase_EngA ribosome 99.7 9.6E-17 2.1E-21 195.5 20.5 162 824-1035 171-344 (429)
90 PF02421 FeoB_N: Ferrous iron 99.7 1.3E-17 2.9E-22 174.8 10.7 147 827-1030 2-156 (156)
91 KOG0467 Translation elongation 99.7 1.9E-17 4E-22 200.5 12.6 117 819-953 5-137 (887)
92 cd04124 RabL2 RabL2 subfamily. 99.7 1.2E-16 2.5E-21 168.5 17.0 153 827-1034 2-157 (161)
93 PRK00093 GTP-binding protein D 99.7 1.8E-16 3.8E-21 193.6 20.3 160 825-1035 173-344 (435)
94 TIGR03598 GTPase_YsxC ribosome 99.7 9.9E-17 2.1E-21 172.4 15.6 150 822-1024 15-179 (179)
95 cd01897 NOG NOG1 is a nucleola 99.7 1.1E-16 2.4E-21 168.7 15.5 151 826-1033 1-166 (168)
96 COG1160 Predicted GTPases [Gen 99.7 5.4E-17 1.2E-21 191.1 13.3 152 826-1035 4-165 (444)
97 cd01895 EngA2 EngA2 subfamily. 99.7 2.2E-16 4.8E-21 165.7 15.7 160 825-1033 2-173 (174)
98 cd04160 Arfrp1 Arfrp1 subfamil 99.7 9.2E-17 2E-21 169.2 12.4 155 828-1031 2-165 (167)
99 cd04154 Arl2 Arl2 subfamily. 99.7 8.1E-17 1.8E-21 171.6 11.9 154 824-1031 13-171 (173)
100 cd01864 Rab19 Rab19 subfamily. 99.7 1.5E-16 3.2E-21 167.9 13.5 156 826-1032 4-163 (165)
101 cd01879 FeoB Ferrous iron tran 99.7 1.4E-16 3E-21 165.7 12.2 147 830-1033 1-155 (158)
102 cd01861 Rab6 Rab6 subfamily. 99.7 2.5E-16 5.3E-21 164.8 14.1 155 827-1033 2-160 (161)
103 PRK03003 GTP-binding protein D 99.7 6E-16 1.3E-20 190.7 19.3 161 824-1035 210-382 (472)
104 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.2E-16 7E-21 164.2 14.2 156 826-1034 3-163 (164)
105 cd04113 Rab4 Rab4 subfamily. 99.7 3.2E-16 7E-21 164.2 14.2 154 827-1032 2-159 (161)
106 cd01862 Rab7 Rab7 subfamily. 99.7 5.2E-16 1.1E-20 163.9 15.7 158 827-1035 2-167 (172)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 3.7E-16 8.1E-21 168.6 14.6 163 825-1035 3-170 (183)
108 cd01898 Obg Obg subfamily. Th 99.7 3.7E-16 8.1E-21 164.9 13.7 153 827-1033 2-169 (170)
109 cd04151 Arl1 Arl1 subfamily. 99.7 2.9E-16 6.3E-21 164.6 12.7 151 828-1032 2-157 (158)
110 cd04114 Rab30 Rab30 subfamily. 99.7 5E-16 1.1E-20 163.9 14.5 156 826-1033 8-167 (169)
111 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5E-16 1.1E-20 161.8 14.3 153 827-1033 3-160 (162)
112 smart00175 RAB Rab subfamily o 99.7 8.2E-16 1.8E-20 160.9 15.5 156 827-1034 2-161 (164)
113 cd04157 Arl6 Arl6 subfamily. 99.7 4.2E-16 9E-21 163.0 13.2 152 828-1031 2-160 (162)
114 PRK03003 GTP-binding protein D 99.7 4.1E-16 8.9E-21 192.2 15.2 152 825-1034 38-198 (472)
115 cd04106 Rab23_lke Rab23-like s 99.7 5E-16 1.1E-20 162.6 13.6 156 827-1032 2-160 (162)
116 TIGR03594 GTPase_EngA ribosome 99.7 3.3E-16 7.1E-21 190.9 14.2 150 827-1034 1-159 (429)
117 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.7E-15 3.6E-20 165.9 18.1 160 827-1036 2-169 (201)
118 cd04119 RJL RJL (RabJ-Like) su 99.7 8.2E-16 1.8E-20 161.1 14.5 155 827-1033 2-165 (168)
119 cd04126 Rab20 Rab20 subfamily. 99.7 1.1E-15 2.5E-20 170.0 16.3 201 827-1052 2-207 (220)
120 smart00173 RAS Ras subfamily o 99.7 6.8E-16 1.5E-20 162.1 13.8 155 827-1034 2-161 (164)
121 PRK04213 GTP-binding protein; 99.7 7.5E-16 1.6E-20 168.2 14.3 158 824-1034 8-191 (201)
122 PTZ00369 Ras-like protein; Pro 99.7 8.8E-16 1.9E-20 166.5 14.7 162 825-1039 5-171 (189)
123 cd01860 Rab5_related Rab5-rela 99.7 9.1E-16 2E-20 160.8 14.0 157 826-1034 2-162 (163)
124 cd01866 Rab2 Rab2 subfamily. 99.7 1.1E-15 2.3E-20 162.2 14.6 156 827-1034 6-165 (168)
125 cd04163 Era Era subfamily. Er 99.7 1.7E-15 3.6E-20 157.4 15.6 157 824-1033 2-167 (168)
126 COG1160 Predicted GTPases [Gen 99.7 1.9E-15 4.2E-20 178.1 17.9 163 824-1035 177-351 (444)
127 TIGR00231 small_GTP small GTP- 99.6 7.5E-16 1.6E-20 157.6 12.6 151 826-1030 2-159 (161)
128 cd04156 ARLTS1 ARLTS1 subfamil 99.6 6.1E-16 1.3E-20 161.8 12.1 153 828-1032 2-159 (160)
129 cd01867 Rab8_Rab10_Rab13_like 99.6 1E-15 2.2E-20 162.1 13.9 157 826-1034 4-164 (167)
130 cd04120 Rab12 Rab12 subfamily. 99.6 1.6E-15 3.4E-20 166.8 15.6 157 827-1034 2-162 (202)
131 cd04159 Arl10_like Arl10-like 99.6 8.5E-16 1.8E-20 158.6 12.6 152 828-1032 2-158 (159)
132 cd00877 Ran Ran (Ras-related n 99.6 1.5E-15 3.4E-20 161.2 14.5 154 827-1034 2-158 (166)
133 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.6E-15 3.4E-20 160.0 14.4 156 827-1034 4-163 (166)
134 cd04136 Rap_like Rap-like subf 99.6 1.5E-15 3.3E-20 158.9 14.0 155 826-1033 2-161 (163)
135 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.9E-16 2.2E-20 160.0 12.4 151 828-1032 2-157 (158)
136 cd04140 ARHI_like ARHI subfami 99.6 1.4E-15 2.9E-20 160.8 13.4 154 827-1033 3-163 (165)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.3E-15 2.9E-20 162.8 13.4 152 826-1031 16-172 (174)
138 cd01863 Rab18 Rab18 subfamily. 99.6 1.7E-15 3.7E-20 158.6 13.8 153 827-1032 2-159 (161)
139 PRK00093 GTP-binding protein D 99.6 1.2E-15 2.6E-20 186.3 14.6 149 826-1032 2-159 (435)
140 cd04132 Rho4_like Rho4-like su 99.6 5.3E-15 1.1E-19 159.4 17.3 164 827-1037 2-169 (187)
141 cd04122 Rab14 Rab14 subfamily. 99.6 2.6E-15 5.6E-20 158.7 14.6 155 827-1033 4-162 (166)
142 cd00879 Sar1 Sar1 subfamily. 99.6 1.3E-15 2.8E-20 164.5 12.6 167 823-1033 17-189 (190)
143 PRK00454 engB GTP-binding prot 99.6 3.5E-15 7.7E-20 161.6 16.0 156 824-1034 23-193 (196)
144 cd04116 Rab9 Rab9 subfamily. 99.6 2.9E-15 6.2E-20 158.7 14.9 154 827-1032 7-168 (170)
145 cd04149 Arf6 Arf6 subfamily. 99.6 1.5E-15 3.4E-20 161.7 12.9 153 825-1031 9-166 (168)
146 cd04144 Ras2 Ras2 subfamily. 99.6 2.6E-15 5.6E-20 162.9 14.8 155 828-1035 2-163 (190)
147 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2.5E-15 5.4E-20 155.5 14.0 144 827-1033 3-155 (157)
148 cd04175 Rap1 Rap1 subgroup. T 99.6 2.3E-15 4.9E-20 158.5 13.8 156 826-1034 2-162 (164)
149 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 3.1E-15 6.7E-20 160.0 14.8 157 825-1034 2-163 (172)
150 cd04127 Rab27A Rab27a subfamil 99.6 2.5E-15 5.5E-20 160.5 14.2 164 826-1034 5-176 (180)
151 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3E-15 6.6E-20 159.1 14.6 158 824-1033 1-167 (170)
152 cd01878 HflX HflX subfamily. 99.6 2E-15 4.4E-20 165.3 13.4 149 826-1033 42-203 (204)
153 PRK15467 ethanolamine utilizat 99.6 1.2E-15 2.7E-20 161.1 11.3 142 827-1036 3-148 (158)
154 cd01865 Rab3 Rab3 subfamily. 99.6 3.6E-15 7.8E-20 157.6 14.8 156 827-1034 3-162 (165)
155 PLN03071 GTP-binding nuclear p 99.6 4.1E-15 8.8E-20 165.5 15.8 158 823-1034 11-171 (219)
156 PRK09518 bifunctional cytidyla 99.6 6.6E-15 1.4E-19 189.6 19.9 161 825-1036 450-622 (712)
157 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.7E-15 5.8E-20 158.2 13.0 151 827-1031 2-157 (159)
158 cd04112 Rab26 Rab26 subfamily. 99.6 4.3E-15 9.2E-20 161.4 14.9 158 827-1036 2-164 (191)
159 PRK09518 bifunctional cytidyla 99.6 3.1E-15 6.7E-20 192.6 16.2 152 825-1034 275-435 (712)
160 smart00178 SAR Sar1p-like memb 99.6 3.1E-15 6.8E-20 161.7 13.7 162 824-1032 16-182 (184)
161 cd01874 Cdc42 Cdc42 subfamily. 99.6 4.9E-15 1.1E-19 159.0 15.0 166 827-1032 3-172 (175)
162 cd01868 Rab11_like Rab11-like. 99.6 4E-15 8.6E-20 156.6 14.1 156 826-1033 4-163 (165)
163 PLN00223 ADP-ribosylation fact 99.6 4.8E-15 1E-19 160.0 14.9 155 826-1034 18-177 (181)
164 PF14578 GTP_EFTU_D4: Elongati 99.6 1E-15 2.2E-20 141.7 8.1 80 1283-1379 2-81 (81)
165 cd00154 Rab Rab family. Rab G 99.6 4.1E-15 8.8E-20 153.3 13.5 153 827-1031 2-158 (159)
166 cd04142 RRP22 RRP22 subfamily. 99.6 5.8E-15 1.3E-19 161.8 15.4 156 827-1033 2-172 (198)
167 cd04123 Rab21 Rab21 subfamily. 99.6 4.7E-15 1E-19 154.4 14.0 155 827-1033 2-160 (162)
168 cd00880 Era_like Era (E. coli 99.6 5.1E-15 1.1E-19 151.5 13.9 154 830-1033 1-162 (163)
169 cd04135 Tc10 TC10 subfamily. 99.6 6.3E-15 1.4E-19 156.5 15.0 166 827-1032 2-171 (174)
170 cd04147 Ras_dva Ras-dva subfam 99.6 4.2E-15 9.1E-20 162.4 14.0 157 828-1035 2-163 (198)
171 cd04110 Rab35 Rab35 subfamily. 99.6 4.9E-15 1.1E-19 162.1 14.5 157 826-1034 7-166 (199)
172 cd04134 Rho3 Rho3 subfamily. 99.6 3.7E-15 8.1E-20 161.7 13.4 165 827-1034 2-173 (189)
173 smart00177 ARF ARF-like small 99.6 6E-15 1.3E-19 158.1 14.6 154 826-1033 14-172 (175)
174 cd01875 RhoG RhoG subfamily. 99.6 7.4E-15 1.6E-19 159.8 15.5 171 824-1034 2-176 (191)
175 cd01893 Miro1 Miro1 subfamily. 99.6 9.6E-15 2.1E-19 154.6 15.8 157 827-1033 2-162 (166)
176 cd04158 ARD1 ARD1 subfamily. 99.6 5.4E-15 1.2E-19 157.3 14.0 153 828-1033 2-159 (169)
177 cd04139 RalA_RalB RalA/RalB su 99.6 5.3E-15 1.1E-19 154.6 13.6 155 827-1034 2-161 (164)
178 smart00174 RHO Rho (Ras homolo 99.6 8E-15 1.7E-19 155.7 15.1 163 828-1033 1-170 (174)
179 COG0218 Predicted GTPase [Gene 99.6 1.3E-14 2.8E-19 155.7 16.6 160 824-1035 23-197 (200)
180 cd04176 Rap2 Rap2 subgroup. T 99.6 5.7E-15 1.2E-19 155.2 13.8 154 827-1033 3-161 (163)
181 KOG0469 Elongation factor 2 [T 99.6 1.1E-15 2.4E-20 176.8 8.9 132 820-953 16-163 (842)
182 cd04101 RabL4 RabL4 (Rab-like4 99.6 6.4E-15 1.4E-19 154.7 13.9 156 827-1033 2-162 (164)
183 cd04137 RheB Rheb (Ras Homolog 99.6 5.8E-15 1.3E-19 157.9 13.8 156 827-1035 3-163 (180)
184 cd04155 Arl3 Arl3 subfamily. 99.6 3.3E-15 7.1E-20 158.5 11.8 156 823-1032 12-172 (173)
185 PTZ00133 ADP-ribosylation fact 99.6 7.2E-15 1.6E-19 158.7 13.7 159 826-1038 18-181 (182)
186 PLN03118 Rab family protein; P 99.6 1.1E-14 2.4E-19 160.7 15.3 157 825-1034 14-176 (211)
187 cd04109 Rab28 Rab28 subfamily. 99.6 1.2E-14 2.6E-19 161.0 15.3 157 827-1034 2-165 (215)
188 KOG0466 Translation initiation 99.6 8.3E-16 1.8E-20 169.6 5.9 225 824-1084 37-295 (466)
189 cd01870 RhoA_like RhoA-like su 99.6 7.2E-15 1.6E-19 156.2 13.0 167 827-1033 3-173 (175)
190 COG2229 Predicted GTPase [Gene 99.6 1.3E-14 2.8E-19 152.4 14.4 157 821-1032 6-175 (187)
191 PLN03110 Rab GTPase; Provision 99.6 1.5E-14 3.2E-19 160.6 15.8 160 826-1037 13-176 (216)
192 cd00157 Rho Rho (Ras homology) 99.6 1.2E-14 2.6E-19 153.4 14.3 165 827-1032 2-170 (171)
193 TIGR02528 EutP ethanolamine ut 99.6 4.8E-15 1E-19 152.4 11.0 135 827-1031 2-141 (142)
194 TIGR03156 GTP_HflX GTP-binding 99.6 7.2E-15 1.6E-19 174.2 13.7 147 826-1032 190-349 (351)
195 cd04118 Rab24 Rab24 subfamily. 99.6 3E-14 6.5E-19 154.4 17.4 161 827-1035 2-166 (193)
196 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 5.1E-15 1.1E-19 157.0 10.9 108 828-953 2-112 (164)
197 cd04121 Rab40 Rab40 subfamily. 99.6 2.4E-14 5.2E-19 155.9 16.3 157 826-1034 7-166 (189)
198 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.2E-14 4.8E-19 153.1 15.7 158 827-1034 2-164 (170)
199 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.4E-14 3E-19 154.0 13.6 154 827-1031 1-165 (167)
200 cd01871 Rac1_like Rac1-like su 99.6 2.2E-14 4.8E-19 153.7 15.0 165 826-1032 2-172 (174)
201 smart00176 RAN Ran (Ras-relate 99.6 1.5E-14 3.2E-19 158.9 13.9 150 831-1034 1-153 (200)
202 cd04143 Rhes_like Rhes_like su 99.6 1.1E-14 2.4E-19 165.0 12.9 156 827-1034 2-170 (247)
203 cd04125 RabA_like RabA-like su 99.6 2.8E-14 6.1E-19 154.3 15.5 158 827-1036 2-163 (188)
204 cd04177 RSR1 RSR1 subgroup. R 99.6 2E-14 4.4E-19 152.3 14.0 155 827-1033 3-162 (168)
205 cd04128 Spg1 Spg1p. Spg1p (se 99.6 3.5E-14 7.5E-19 153.5 16.1 160 827-1034 2-165 (182)
206 cd04117 Rab15 Rab15 subfamily. 99.6 3.2E-14 7E-19 150.1 14.9 152 827-1033 2-160 (161)
207 cd04111 Rab39 Rab39 subfamily. 99.6 2.5E-14 5.4E-19 158.3 14.5 158 826-1037 3-168 (211)
208 PRK09554 feoB ferrous iron tra 99.6 1.8E-14 3.8E-19 185.2 15.2 154 824-1034 2-167 (772)
209 cd04146 RERG_RasL11_like RERG/ 99.6 2.5E-14 5.3E-19 151.0 13.2 154 828-1034 2-163 (165)
210 cd00876 Ras Ras family. The R 99.6 2.6E-14 5.6E-19 148.6 13.2 152 828-1032 2-158 (160)
211 KOG1423 Ras-like GTPase ERA [C 99.6 4.2E-14 9.1E-19 157.5 15.4 187 820-1034 67-270 (379)
212 cd01881 Obg_like The Obg-like 99.6 2.4E-14 5.2E-19 151.6 12.8 150 830-1033 1-175 (176)
213 PLN03108 Rab family protein; P 99.6 4.8E-14 1E-18 155.9 15.5 157 826-1034 7-167 (210)
214 cd04133 Rop_like Rop subfamily 99.6 5.2E-14 1.1E-18 151.5 15.4 166 827-1034 3-172 (176)
215 PRK11058 GTPase HflX; Provisio 99.5 6.2E-14 1.3E-18 169.9 17.7 152 826-1035 198-362 (426)
216 PRK05291 trmE tRNA modificatio 99.5 1.8E-14 3.9E-19 176.2 13.2 146 825-1034 215-369 (449)
217 PRK12299 obgE GTPase CgtA; Rev 99.5 6.2E-14 1.4E-18 165.0 17.1 154 827-1035 160-328 (335)
218 PF10662 PduV-EutP: Ethanolami 99.5 1.7E-14 3.8E-19 148.5 10.5 134 828-1030 4-141 (143)
219 KOG0468 U5 snRNP-specific prot 99.5 2E-14 4.3E-19 171.3 12.3 121 820-953 125-262 (971)
220 TIGR02729 Obg_CgtA Obg family 99.5 4.5E-14 9.8E-19 166.0 14.9 152 827-1034 159-328 (329)
221 PRK12298 obgE GTPase CgtA; Rev 99.5 6.2E-14 1.3E-18 168.1 15.6 157 827-1035 161-333 (390)
222 cd01876 YihA_EngB The YihA (En 99.5 9.8E-14 2.1E-18 144.6 15.2 153 828-1033 2-169 (170)
223 cd01892 Miro2 Miro2 subfamily. 99.5 4.5E-14 9.8E-19 150.5 12.6 154 826-1034 5-165 (169)
224 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1E-13 2.3E-18 147.7 14.5 165 827-1031 2-170 (173)
225 PRK12296 obgE GTPase CgtA; Rev 99.5 7.4E-14 1.6E-18 170.3 15.1 155 827-1036 161-341 (500)
226 cd04131 Rnd Rnd subfamily. Th 99.5 1.8E-13 4E-18 147.5 16.0 112 827-953 3-118 (178)
227 PF00025 Arf: ADP-ribosylation 99.5 7.2E-14 1.6E-18 150.1 12.6 157 824-1033 13-174 (175)
228 cd04105 SR_beta Signal recogni 99.5 1.1E-13 2.4E-18 152.3 14.3 187 826-1031 1-201 (203)
229 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 1.9E-13 4.2E-18 147.9 15.7 166 827-1032 7-177 (182)
230 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 2E-13 4.4E-18 153.0 16.4 171 824-1034 12-187 (232)
231 PRK12297 obgE GTPase CgtA; Rev 99.5 2E-13 4.3E-18 164.8 16.4 152 827-1035 160-327 (424)
232 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.7E-13 3.6E-18 152.9 14.4 109 827-953 3-118 (222)
233 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.8E-13 3.8E-18 166.8 14.9 148 826-1035 204-360 (442)
234 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 3.1E-13 6.7E-18 142.5 13.8 163 822-1036 19-186 (221)
235 cd00882 Ras_like_GTPase Ras-li 99.5 1.9E-13 4E-18 137.9 11.9 151 830-1031 1-156 (157)
236 cd04148 RGK RGK subfamily. Th 99.5 3E-13 6.4E-18 150.9 14.5 154 827-1034 2-162 (221)
237 KOG0394 Ras-related GTPase [Ge 99.5 1.9E-13 4.1E-18 142.7 10.7 159 827-1034 11-177 (210)
238 KOG0092 GTPase Rab5/YPT51 and 99.5 2.4E-13 5.2E-18 143.5 11.3 161 823-1035 3-167 (200)
239 cd04129 Rho2 Rho2 subfamily. 99.5 6.5E-13 1.4E-17 143.8 15.0 164 827-1032 3-170 (187)
240 KOG1532 GTPase XAB1, interacts 99.5 1.7E-13 3.7E-18 150.5 10.2 198 822-1037 16-266 (366)
241 PF00071 Ras: Ras family; Int 99.5 8.4E-13 1.8E-17 138.4 15.2 152 828-1034 2-160 (162)
242 TIGR00437 feoB ferrous iron tr 99.4 2.8E-13 6.1E-18 170.5 12.7 146 832-1034 1-154 (591)
243 PTZ00132 GTP-binding nuclear p 99.4 1.1E-12 2.4E-17 145.2 15.5 157 823-1033 7-166 (215)
244 KOG0084 GTPase Rab1/YPT1, smal 99.4 1E-12 2.2E-17 139.3 13.8 161 825-1037 9-174 (205)
245 KOG0098 GTPase Rab2, small G p 99.4 2E-12 4.3E-17 135.4 12.3 154 827-1032 8-165 (216)
246 COG0370 FeoB Fe2+ transport sy 99.4 1.4E-12 3.1E-17 160.2 12.6 153 826-1035 4-164 (653)
247 cd04104 p47_IIGP_like p47 (47- 99.4 7.3E-12 1.6E-16 137.2 16.7 178 826-1037 2-186 (197)
248 KOG0078 GTP-binding protein SE 99.4 3.1E-12 6.7E-17 137.5 13.3 161 824-1036 11-175 (207)
249 PRK09866 hypothetical protein; 99.4 7.6E-12 1.7E-16 152.9 18.0 113 888-1032 230-350 (741)
250 COG0486 ThdF Predicted GTPase 99.4 2.1E-12 4.6E-17 153.1 12.8 154 822-1035 213-376 (454)
251 cd01896 DRG The developmentall 99.4 6.7E-12 1.5E-16 141.2 15.1 81 827-923 2-89 (233)
252 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.6E-12 9.9E-17 141.8 13.4 109 823-953 37-146 (225)
253 cd04103 Centaurin_gamma Centau 99.4 4.7E-12 1E-16 133.8 12.8 150 827-1032 2-156 (158)
254 KOG0080 GTPase Rab18, small G 99.3 2.6E-12 5.7E-17 131.0 9.3 159 823-1033 9-172 (209)
255 PF01926 MMR_HSR1: 50S ribosom 99.3 3.8E-12 8.3E-17 127.1 10.3 105 828-949 2-116 (116)
256 cd01873 RhoBTB RhoBTB subfamil 99.3 1.4E-11 2.9E-16 135.0 15.3 121 827-953 4-133 (195)
257 COG1100 GTPase SAR1 and relate 99.3 2.8E-11 6.1E-16 133.6 14.7 174 826-1036 6-186 (219)
258 KOG0073 GTP-binding ADP-ribosy 99.3 2.1E-11 4.6E-16 125.4 12.5 158 824-1034 15-177 (185)
259 COG3596 Predicted GTPase [Gene 99.3 2.2E-11 4.8E-16 135.6 13.3 175 822-1035 36-222 (296)
260 COG2262 HflX GTPases [General 99.3 1.9E-11 4.2E-16 142.7 12.6 154 824-1036 191-357 (411)
261 KOG0087 GTPase Rab11/YPT3, sma 99.3 2.7E-11 5.9E-16 129.8 12.1 161 828-1040 17-181 (222)
262 KOG0095 GTPase Rab30, small G 99.3 4.5E-11 9.7E-16 120.4 12.5 156 827-1034 9-168 (213)
263 COG1084 Predicted GTPase [Gene 99.2 5.4E-11 1.2E-15 135.3 13.6 159 824-1037 167-338 (346)
264 KOG0093 GTPase Rab3, small G p 99.2 4.5E-11 9.7E-16 120.5 11.5 165 827-1043 23-191 (193)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 1.3E-10 2.8E-15 127.2 15.1 111 827-954 2-130 (196)
266 KOG0086 GTPase Rab4, small G p 99.2 1E-10 2.2E-15 118.4 12.3 153 828-1032 12-168 (214)
267 cd04102 RabL3 RabL3 (Rab-like3 99.2 6.3E-11 1.4E-15 130.5 11.8 118 827-953 2-142 (202)
268 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 5.3E-11 1.1E-15 112.9 9.5 75 1295-1379 8-84 (84)
269 PRK13768 GTPase; Provisional 99.2 2.7E-11 5.9E-16 137.9 9.0 127 888-1034 97-246 (253)
270 KOG1489 Predicted GTP-binding 99.2 1E-10 2.2E-15 131.8 12.8 149 827-1032 198-364 (366)
271 KOG0079 GTP-binding protein H- 99.2 5.2E-11 1.1E-15 120.1 9.2 155 828-1034 11-168 (198)
272 cd01850 CDC_Septin CDC/Septin. 99.2 1.9E-10 4.1E-15 132.6 15.0 113 826-953 5-156 (276)
273 PF08477 Miro: Miro-like prote 99.2 6.8E-11 1.5E-15 117.9 9.4 106 827-951 1-119 (119)
274 KOG0070 GTP-binding ADP-ribosy 99.2 6.6E-11 1.4E-15 125.0 9.1 155 827-1035 19-178 (181)
275 PLN00023 GTP-binding protein; 99.2 1.1E-10 2.4E-15 135.2 11.1 128 822-953 18-164 (334)
276 KOG0076 GTP-binding ADP-ribosy 99.2 6E-11 1.3E-15 123.2 7.8 161 827-1035 19-187 (197)
277 PF09439 SRPRB: Signal recogni 99.1 1.5E-10 3.2E-15 124.6 10.1 112 824-953 2-125 (181)
278 COG0536 Obg Predicted GTPase [ 99.1 4.6E-10 1E-14 128.2 14.4 157 828-1038 162-336 (369)
279 KOG0075 GTP-binding ADP-ribosy 99.1 1.2E-10 2.6E-15 117.6 7.7 154 828-1034 23-181 (186)
280 KOG0088 GTPase Rab21, small G 99.1 2.2E-10 4.9E-15 116.6 8.8 158 825-1034 13-174 (218)
281 KOG0395 Ras-related GTPase [Ge 99.1 2.9E-10 6.3E-15 124.6 10.2 160 824-1036 2-166 (196)
282 COG5192 BMS1 GTP-binding prote 99.1 1.5E-09 3.2E-14 127.9 15.9 118 812-954 55-177 (1077)
283 cd01899 Ygr210 Ygr210 subfamil 99.1 7.8E-10 1.7E-14 129.6 13.8 94 828-922 1-110 (318)
284 KOG1191 Mitochondrial GTPase [ 99.0 8.6E-10 1.9E-14 130.6 12.2 159 825-1034 268-449 (531)
285 PRK09435 membrane ATPase/prote 99.0 8.6E-10 1.9E-14 129.5 11.3 114 886-1035 147-260 (332)
286 PF03029 ATP_bind_1: Conserved 99.0 4.3E-10 9.4E-15 126.8 8.5 133 889-1035 92-237 (238)
287 PTZ00099 rab6; Provisional 99.0 1.3E-09 2.7E-14 117.7 11.3 109 889-1035 30-142 (176)
288 COG4917 EutP Ethanolamine util 99.0 7E-10 1.5E-14 109.7 7.9 137 827-1032 3-143 (148)
289 smart00053 DYNc Dynamin, GTPas 99.0 3.5E-09 7.6E-14 119.3 14.1 132 822-953 23-205 (240)
290 COG1163 DRG Predicted GTPase [ 99.0 3.2E-09 6.9E-14 120.6 13.3 80 827-922 65-151 (365)
291 TIGR00073 hypB hydrogenase acc 99.0 1.2E-09 2.7E-14 120.7 9.7 167 824-1033 21-205 (207)
292 KOG0072 GTP-binding ADP-ribosy 99.0 1.1E-09 2.5E-14 110.3 7.7 158 824-1035 17-179 (182)
293 KOG0091 GTPase Rab39, small G 98.9 5.3E-09 1.2E-13 107.5 11.7 160 827-1037 10-175 (213)
294 KOG0090 Signal recognition par 98.9 6.7E-09 1.5E-13 111.8 12.5 173 826-1032 39-236 (238)
295 KOG0071 GTP-binding ADP-ribosy 98.9 4.8E-09 1E-13 105.4 10.5 153 828-1034 20-177 (180)
296 KOG0097 GTPase Rab14, small G 98.9 6.2E-09 1.3E-13 104.1 10.8 112 828-953 14-129 (215)
297 KOG0074 GTP-binding ADP-ribosy 98.9 2.1E-09 4.6E-14 108.0 7.3 155 824-1031 16-175 (185)
298 KOG0081 GTPase Rab27, small G 98.9 2.5E-09 5.3E-14 109.2 7.1 171 828-1041 12-187 (219)
299 KOG0410 Predicted GTP binding 98.9 3.9E-09 8.5E-14 119.1 9.3 148 822-1033 175-339 (410)
300 PRK09602 translation-associate 98.9 1E-08 2.2E-13 123.7 13.1 97 826-922 2-113 (396)
301 TIGR00750 lao LAO/AO transport 98.9 7E-09 1.5E-13 121.2 11.0 113 886-1034 125-237 (300)
302 KOG4252 GTP-binding protein [S 98.9 3.6E-09 7.8E-14 110.0 7.2 211 819-1084 14-228 (246)
303 PF00350 Dynamin_N: Dynamin fa 98.9 8.6E-09 1.9E-13 109.3 10.0 64 887-950 100-168 (168)
304 cd01853 Toc34_like Toc34-like 98.8 8E-08 1.7E-12 109.3 15.4 117 822-954 28-163 (249)
305 KOG2486 Predicted GTPase [Gene 98.8 1E-08 2.2E-13 114.3 7.9 166 823-1034 134-315 (320)
306 cd03702 IF2_mtIF2_II This fami 98.8 2.1E-08 4.5E-13 97.2 8.2 89 1049-1153 2-91 (95)
307 TIGR00101 ureG urease accessor 98.8 2.9E-08 6.2E-13 109.3 10.4 101 887-1032 91-193 (199)
308 KOG0083 GTPase Rab26/Rab37, sm 98.8 4.6E-09 9.9E-14 104.4 3.6 153 829-1032 1-157 (192)
309 PF05049 IIGP: Interferon-indu 98.7 6E-08 1.3E-12 114.9 13.3 170 826-1035 36-218 (376)
310 TIGR00991 3a0901s02IAP34 GTP-b 98.7 3.2E-07 7E-12 106.2 17.5 116 822-953 35-166 (313)
311 KOG0393 Ras-related small GTPa 98.7 2.3E-08 5.1E-13 108.3 7.4 168 824-1033 3-177 (198)
312 PRK10463 hydrogenase nickel in 98.7 3.5E-08 7.5E-13 113.4 7.9 167 823-1032 102-286 (290)
313 PTZ00258 GTP-binding protein; 98.7 1.7E-07 3.7E-12 112.2 13.7 98 824-922 20-126 (390)
314 TIGR02836 spore_IV_A stage IV 98.7 1.4E-07 3.1E-12 111.1 12.3 118 827-952 19-192 (492)
315 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 5.5E-07 1.2E-11 101.1 15.8 160 828-1035 2-173 (232)
316 PF03308 ArgK: ArgK protein; 98.6 4.6E-08 9.9E-13 109.6 6.6 109 887-1034 121-229 (266)
317 KOG0077 Vesicle coat complex C 98.6 6.5E-08 1.4E-12 100.3 6.8 109 827-954 22-135 (193)
318 PF00735 Septin: Septin; Inte 98.6 2.6E-07 5.6E-12 106.9 12.6 122 827-953 6-155 (281)
319 KOG1490 GTP-binding protein CR 98.6 1E-07 2.3E-12 112.9 9.4 157 825-1032 168-338 (620)
320 COG1703 ArgK Putative periplas 98.6 1.4E-07 3E-12 106.9 10.0 175 823-1035 49-254 (323)
321 cd03701 IF2_IF5B_II IF2_IF5B_I 98.5 2.4E-07 5.2E-12 90.0 8.6 88 1049-1153 2-91 (95)
322 KOG1954 Endocytosis/signaling 98.5 1.9E-06 4.1E-11 98.9 16.8 134 821-954 54-225 (532)
323 COG0378 HypB Ni2+-binding GTPa 98.5 1.6E-07 3.5E-12 100.8 6.6 163 826-1033 14-199 (202)
324 KOG0066 eIF2-interacting prote 98.5 5.6E-08 1.2E-12 112.8 2.8 89 59-175 1-90 (807)
325 PF04548 AIG1: AIG1 family; I 98.4 2.2E-06 4.7E-11 95.4 13.0 111 827-954 2-130 (212)
326 KOG1707 Predicted Ras related/ 98.4 6.3E-07 1.4E-11 108.5 8.7 118 822-955 6-130 (625)
327 cd01859 MJ1464 MJ1464. This f 98.4 1.2E-06 2.5E-11 92.4 9.2 95 901-1035 2-96 (156)
328 KOG0052 Translation elongation 98.4 1.6E-07 3.6E-12 109.8 2.8 66 888-953 82-155 (391)
329 KOG3883 Ras family small GTPas 98.3 3.5E-06 7.7E-11 86.3 10.0 114 824-953 8-131 (198)
330 COG5019 CDC3 Septin family pro 98.2 4.7E-06 1E-10 97.1 11.3 115 824-953 22-175 (373)
331 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 3.7E-06 8.1E-11 89.3 8.9 154 825-1032 10-166 (216)
332 PRK14974 cell division protein 98.2 2.1E-06 4.6E-11 101.5 7.3 63 888-953 223-292 (336)
333 COG0012 Predicted GTPase, prob 98.2 1.2E-05 2.5E-10 94.5 12.4 98 825-922 2-108 (372)
334 PRK14722 flhF flagellar biosyn 98.2 4.2E-06 9.1E-11 100.0 9.0 130 824-953 136-294 (374)
335 PRK09601 GTP-binding protein Y 98.1 4.5E-06 9.8E-11 99.2 7.9 97 826-923 3-108 (364)
336 cd01900 YchF YchF subfamily. 98.1 2.3E-06 5.1E-11 98.4 5.2 95 828-923 1-104 (274)
337 TIGR00157 ribosome small subun 98.1 8.3E-06 1.8E-10 92.8 9.0 96 898-1032 23-120 (245)
338 cd01855 YqeH YqeH. YqeH is an 98.1 7.7E-06 1.7E-10 89.1 8.3 104 896-1034 19-124 (190)
339 KOG1487 GTP-binding protein DR 98.1 7.8E-06 1.7E-10 90.4 8.1 78 828-923 62-148 (358)
340 KOG1547 Septin CDC10 and relat 98.1 3.1E-05 6.7E-10 84.9 12.5 117 826-953 47-197 (336)
341 TIGR00993 3a0901s04IAP86 chlor 98.1 2.8E-05 6E-10 96.9 13.6 112 826-954 119-250 (763)
342 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.2E-05 2.7E-10 84.8 9.4 89 907-1034 4-94 (157)
343 cd03112 CobW_like The function 98.1 1.2E-05 2.6E-10 85.5 9.2 63 887-952 86-158 (158)
344 KOG4423 GTP-binding protein-li 98.1 1.1E-06 2.5E-11 92.6 1.0 160 821-1032 23-191 (229)
345 KOG2655 Septin family protein 98.0 2.8E-05 6.1E-10 91.5 12.1 121 826-953 22-171 (366)
346 PRK10416 signal recognition pa 98.0 9.3E-06 2E-10 95.7 8.3 65 887-953 196-272 (318)
347 cd01849 YlqF_related_GTPase Yl 98.0 3.9E-05 8.4E-10 81.0 12.1 83 913-1034 1-84 (155)
348 cd01856 YlqF YlqF. Proteins o 98.0 1.4E-05 3E-10 85.9 8.4 99 895-1035 2-101 (171)
349 TIGR00064 ftsY signal recognit 98.0 8.9E-06 1.9E-10 93.9 7.2 64 887-953 154-230 (272)
350 PRK12289 GTPase RsgA; Reviewed 98.0 3.1E-05 6.6E-10 92.4 10.8 88 906-1033 84-173 (352)
351 TIGR01425 SRP54_euk signal rec 98.0 1.6E-05 3.6E-10 96.4 8.3 65 887-953 182-252 (429)
352 TIGR03596 GTPase_YlqF ribosome 97.9 2.2E-05 4.9E-10 90.9 9.1 100 895-1036 4-104 (276)
353 cd01858 NGP_1 NGP-1. Autoanti 97.9 1.8E-05 3.8E-10 83.7 6.6 54 826-898 103-157 (157)
354 cd04178 Nucleostemin_like Nucl 97.9 2.1E-05 4.6E-10 84.8 6.5 55 825-898 117-172 (172)
355 PRK00771 signal recognition pa 97.8 3.5E-05 7.7E-10 94.2 8.5 61 888-953 176-245 (437)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 4.4E-05 9.5E-10 79.3 7.7 49 905-953 5-55 (141)
357 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.6E-05 1E-09 88.8 8.6 100 895-1036 7-107 (287)
358 PRK11889 flhF flagellar biosyn 97.8 5.3E-05 1.2E-09 90.3 9.0 64 888-953 321-390 (436)
359 PF00448 SRP54: SRP54-type pro 97.8 3.3E-05 7.1E-10 85.1 6.0 64 888-953 84-153 (196)
360 PRK12727 flagellar biosynthesi 97.7 8.3E-05 1.8E-09 91.7 9.6 126 824-953 349-497 (559)
361 KOG0066 eIF2-interacting prote 97.7 2E-05 4.3E-10 92.2 4.0 61 197-263 24-92 (807)
362 PRK00098 GTPase RsgA; Reviewed 97.7 8.8E-05 1.9E-09 86.9 9.4 84 909-1031 78-163 (298)
363 COG0523 Putative GTPases (G3E 97.7 0.00022 4.9E-09 84.1 12.4 126 826-954 2-159 (323)
364 PF05783 DLIC: Dynein light in 97.7 0.00052 1.1E-08 84.7 16.0 84 826-924 26-113 (472)
365 cd01851 GBP Guanylate-binding 97.7 7.5E-05 1.6E-09 83.9 8.1 84 827-923 9-103 (224)
366 cd01849 YlqF_related_GTPase Yl 97.7 5.6E-05 1.2E-09 79.8 6.4 56 824-898 99-155 (155)
367 KOG3905 Dynein light intermedi 97.7 0.00071 1.5E-08 77.3 15.2 23 827-849 54-76 (473)
368 PF03193 DUF258: Protein of un 97.7 2.5E-05 5.4E-10 83.0 3.6 28 822-849 32-59 (161)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 5.4E-05 1.2E-09 78.7 6.1 54 827-899 85-139 (141)
370 cd03693 EF1_alpha_II EF1_alpha 97.7 0.00017 3.7E-09 69.6 8.9 84 1046-1145 3-89 (91)
371 KOG1486 GTP-binding protein DR 97.7 0.00033 7.1E-09 77.5 11.4 79 827-923 64-151 (364)
372 cd01855 YqeH YqeH. YqeH is an 97.6 6.7E-05 1.5E-09 81.8 6.2 25 826-850 128-152 (190)
373 PRK12288 GTPase RsgA; Reviewed 97.6 0.00049 1.1E-08 82.2 13.2 87 909-1032 118-205 (347)
374 KOG1673 Ras GTPases [General f 97.6 0.0003 6.5E-09 72.7 9.2 163 822-1031 17-182 (205)
375 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00011 2.3E-09 85.8 6.9 55 825-898 121-176 (287)
376 cd03115 SRP The signal recogni 97.6 0.00018 3.9E-09 77.2 7.8 64 887-953 82-152 (173)
377 PRK01889 GTPase RsgA; Reviewed 97.6 0.00023 5E-09 85.5 9.5 82 909-1030 110-192 (356)
378 PRK10867 signal recognition pa 97.5 0.00016 3.5E-09 88.4 8.1 63 887-952 183-252 (433)
379 cd00066 G-alpha G protein alph 97.5 0.00019 4.1E-09 84.8 8.3 68 886-953 159-241 (317)
380 TIGR03597 GTPase_YqeH ribosome 97.5 5.6E-05 1.2E-09 90.8 3.9 108 827-953 156-279 (360)
381 cd03114 ArgK-like The function 97.5 0.00016 3.4E-09 76.2 6.7 58 887-951 91-148 (148)
382 TIGR03596 GTPase_YlqF ribosome 97.5 0.00015 3.3E-09 84.0 7.2 56 824-898 117-173 (276)
383 cd01856 YlqF YlqF. Proteins o 97.5 0.00017 3.7E-09 77.4 6.8 56 824-898 114-170 (171)
384 TIGR00959 ffh signal recogniti 97.5 0.00022 4.8E-09 87.1 8.5 63 887-952 182-251 (428)
385 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00044 9.6E-09 85.8 10.8 130 824-953 108-274 (749)
386 PRK12726 flagellar biosynthesi 97.5 0.00033 7.2E-09 83.4 9.4 24 824-847 205-228 (407)
387 PRK12724 flagellar biosynthesi 97.5 0.00038 8.3E-09 84.1 9.9 127 824-953 222-372 (432)
388 PTZ00121 MAEBL; Provisional 97.5 0.00048 1E-08 89.7 11.1 14 30-43 1001-1014(2084)
389 cd03696 selB_II selB_II: this 97.4 0.00036 7.7E-09 66.1 7.2 74 1295-1379 8-83 (83)
390 PRK06731 flhF flagellar biosyn 97.4 0.00047 1E-08 79.6 9.6 127 824-953 74-224 (270)
391 PRK12723 flagellar biosynthesi 97.4 0.00057 1.2E-08 82.6 10.7 128 823-953 172-325 (388)
392 TIGR02475 CobW cobalamin biosy 97.4 0.0013 2.7E-08 78.7 13.5 25 824-848 3-27 (341)
393 PF02492 cobW: CobW/HypB/UreG, 97.4 0.00024 5.2E-09 76.9 6.6 124 826-953 1-154 (178)
394 PRK14721 flhF flagellar biosyn 97.4 0.00086 1.9E-08 81.7 11.9 127 824-953 190-339 (420)
395 PRK14723 flhF flagellar biosyn 97.4 0.00034 7.4E-09 90.0 8.6 126 825-953 185-336 (767)
396 PRK05703 flhF flagellar biosyn 97.4 0.00075 1.6E-08 82.8 11.2 65 887-953 299-370 (424)
397 PRK12289 GTPase RsgA; Reviewed 97.4 0.0002 4.4E-09 85.6 5.9 27 823-849 170-196 (352)
398 PRK12288 GTPase RsgA; Reviewed 97.4 0.0002 4.3E-09 85.5 5.6 27 823-849 203-229 (347)
399 cd03694 GTPBP_II Domain II of 97.4 0.00069 1.5E-08 64.9 8.2 82 1048-1142 1-86 (87)
400 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00049 1.1E-08 80.3 8.5 83 909-1031 76-160 (287)
401 TIGR03348 VI_IcmF type VI secr 97.3 0.0012 2.5E-08 90.7 13.0 118 822-955 108-258 (1169)
402 TIGR03597 GTPase_YqeH ribosome 97.3 0.00077 1.7E-08 81.1 9.8 101 898-1032 50-150 (360)
403 PRK06995 flhF flagellar biosyn 97.3 0.001 2.2E-08 82.2 11.0 24 825-848 256-279 (484)
404 cd03110 Fer4_NifH_child This p 97.3 0.0015 3.1E-08 70.5 10.6 66 886-953 91-156 (179)
405 TIGR00092 GTP-binding protein 97.3 0.00034 7.4E-09 83.5 6.0 96 827-923 4-109 (368)
406 cd03697 EFTU_II EFTU_II: Elong 97.3 0.00087 1.9E-08 64.2 7.7 82 1048-1143 1-85 (87)
407 COG1161 Predicted GTPases [Gen 97.2 0.00039 8.5E-09 82.3 6.0 56 824-898 131-187 (322)
408 cd03698 eRF3_II_like eRF3_II_l 97.2 0.0015 3.2E-08 62.1 8.6 78 1047-1141 1-81 (83)
409 COG1162 Predicted GTPases [Gen 97.2 0.00041 8.8E-09 80.2 5.3 28 821-848 160-187 (301)
410 cd01859 MJ1464 MJ1464. This f 97.1 0.00091 2E-08 70.4 6.7 54 826-898 102-156 (156)
411 KOG3887 Predicted small GTPase 97.1 0.002 4.4E-08 71.1 9.2 114 826-954 28-149 (347)
412 TIGR00157 ribosome small subun 97.0 0.00069 1.5E-08 77.3 5.5 27 823-849 118-144 (245)
413 PRK11537 putative GTP-binding 97.0 0.0024 5.2E-08 75.6 9.6 127 824-953 3-163 (318)
414 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00096 2.1E-08 77.9 5.9 29 822-850 158-186 (287)
415 cd04089 eRF3_II eRF3_II: domai 96.9 0.0042 9E-08 58.8 8.6 77 1047-1141 1-80 (82)
416 KOG1491 Predicted GTP-binding 96.9 0.0013 2.9E-08 76.1 6.1 100 824-923 19-126 (391)
417 KOG3886 GTP-binding protein [S 96.9 0.0022 4.8E-08 70.6 7.3 113 827-954 6-130 (295)
418 PRK00098 GTPase RsgA; Reviewed 96.9 0.0013 2.9E-08 77.1 5.8 27 823-849 162-188 (298)
419 cd02036 MinD Bacterial cell di 96.8 0.0031 6.7E-08 67.4 8.2 63 889-953 64-127 (179)
420 COG1419 FlhF Flagellar GTP-bin 96.8 0.0031 6.7E-08 75.6 8.8 126 825-953 203-351 (407)
421 cd03693 EF1_alpha_II EF1_alpha 96.8 0.0039 8.4E-08 60.3 8.0 75 1294-1379 11-87 (91)
422 COG3640 CooC CO dehydrogenase 96.8 0.0013 2.8E-08 73.1 5.0 62 888-952 134-197 (255)
423 KOG2485 Conserved ATP/GTP bind 96.8 0.0018 3.9E-08 74.5 6.2 57 826-898 144-206 (335)
424 cd03696 selB_II selB_II: this 96.8 0.0053 1.2E-07 58.2 8.5 68 1048-1131 1-71 (83)
425 PRK13796 GTPase YqeH; Provisio 96.8 0.0014 3E-08 79.1 5.4 55 826-899 161-221 (365)
426 KOG3859 Septins (P-loop GTPase 96.7 0.0026 5.6E-08 71.5 6.6 137 824-996 41-211 (406)
427 cd02038 FleN-like FleN is a me 96.7 0.0069 1.5E-07 63.0 9.4 63 888-952 45-109 (139)
428 KOG0447 Dynamin-like GTP bindi 96.7 0.021 4.5E-07 69.1 14.3 64 888-953 412-492 (980)
429 COG3523 IcmF Type VI protein s 96.7 0.0072 1.6E-07 81.1 11.6 115 825-955 125-271 (1188)
430 KOG2743 Cobalamin synthesis pr 96.6 0.019 4.2E-07 65.6 12.4 28 820-847 52-79 (391)
431 smart00275 G_alpha G protein a 96.6 0.0063 1.4E-07 72.8 9.0 135 888-1034 184-333 (342)
432 COG0541 Ffh Signal recognition 96.5 0.0041 8.8E-08 74.7 6.9 123 824-952 99-251 (451)
433 cd01342 Translation_Factor_II_ 96.5 0.011 2.4E-07 53.9 8.4 69 1299-1377 13-81 (83)
434 PRK13796 GTPase YqeH; Provisio 96.5 0.01 2.2E-07 71.8 9.9 97 900-1032 58-156 (365)
435 cd03695 CysN_NodQ_II CysN_NodQ 96.5 0.012 2.6E-07 55.7 8.3 66 1048-1129 1-69 (81)
436 cd04178 Nucleostemin_like Nucl 96.4 0.0063 1.4E-07 65.8 7.1 41 913-953 1-43 (172)
437 KOG0082 G-protein alpha subuni 96.4 0.0064 1.4E-07 72.1 7.7 71 883-953 190-275 (354)
438 smart00010 small_GTPase Small 96.4 0.0058 1.3E-07 60.8 6.2 22 827-848 2-23 (124)
439 KOG1424 Predicted GTP-binding 96.4 0.0021 4.6E-08 77.9 3.3 59 826-903 315-376 (562)
440 PRK13695 putative NTPase; Prov 96.4 0.01 2.2E-07 64.0 8.2 42 908-951 93-137 (174)
441 cd02037 MRP-like MRP (Multiple 96.3 0.0094 2E-07 63.8 7.6 67 887-953 67-134 (169)
442 KOG1029 Endocytic adaptor prot 96.3 0.033 7.2E-07 69.6 12.9 36 534-569 380-416 (1118)
443 PTZ00266 NIMA-related protein 96.3 0.025 5.5E-07 75.4 12.6 10 1250-1259 998-1007(1021)
444 cd03111 CpaE_like This protein 96.3 0.0096 2.1E-07 59.1 6.7 59 889-949 44-106 (106)
445 PF03205 MobB: Molybdopterin g 96.2 0.0018 3.9E-08 67.7 1.3 23 826-848 1-23 (140)
446 KOG1707 Predicted Ras related/ 96.2 0.022 4.7E-07 70.4 10.6 107 828-953 428-539 (625)
447 cd03694 GTPBP_II Domain II of 96.2 0.015 3.2E-07 55.8 7.4 76 1295-1378 8-86 (87)
448 KOG1029 Endocytic adaptor prot 96.2 0.035 7.5E-07 69.4 12.2 14 530-543 384-397 (1118)
449 cd03698 eRF3_II_like eRF3_II_l 96.2 0.017 3.7E-07 54.8 7.6 73 1295-1378 9-82 (83)
450 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.014 3.1E-07 55.1 6.9 94 827-948 1-99 (99)
451 KOG1534 Putative transcription 96.0 0.017 3.7E-07 63.2 7.5 66 889-954 99-178 (273)
452 COG1162 Predicted GTPases [Gen 96.0 0.031 6.8E-07 65.0 10.2 123 909-1070 77-212 (301)
453 PF09547 Spore_IV_A: Stage IV 96.0 0.043 9.4E-07 65.9 11.5 25 928-952 168-192 (492)
454 cd04089 eRF3_II eRF3_II: domai 96.0 0.023 5E-07 53.8 7.6 72 1295-1378 9-81 (82)
455 cd02042 ParA ParA and ParB of 95.9 0.016 3.5E-07 56.6 6.5 72 827-923 1-73 (104)
456 COG1618 Predicted nucleotide k 95.8 0.11 2.5E-06 55.1 12.2 123 827-952 7-142 (179)
457 cd03691 BipA_TypA_II BipA_TypA 95.8 0.035 7.5E-07 52.8 7.8 83 1048-1139 1-84 (86)
458 KOG0163 Myosin class VI heavy 95.8 0.067 1.5E-06 66.7 11.9 13 940-952 1191-1203(1259)
459 cd03697 EFTU_II EFTU_II: Elong 95.7 0.023 5E-07 54.5 6.4 75 1295-1378 8-84 (87)
460 cd03690 Tet_II Tet_II: This su 95.7 0.03 6.4E-07 53.5 6.9 82 1046-1139 2-83 (85)
461 COG0552 FtsY Signal recognitio 95.7 0.023 5.1E-07 66.5 7.4 26 822-847 136-161 (340)
462 PF03144 GTP_EFTU_D2: Elongati 95.4 0.02 4.4E-07 52.6 4.7 69 1062-1139 1-73 (74)
463 PRK13849 putative crown gall t 95.4 0.021 4.5E-07 64.7 5.7 63 887-951 83-151 (231)
464 KOG4181 Uncharacterized conser 95.4 0.019 4.1E-07 66.6 5.3 24 826-849 189-212 (491)
465 cd01342 Translation_Factor_II_ 95.4 0.06 1.3E-06 48.9 7.8 49 1048-1096 1-49 (83)
466 TIGR01969 minD_arch cell divis 95.4 0.028 6.2E-07 63.5 6.6 63 888-952 109-172 (251)
467 KOG0163 Myosin class VI heavy 95.3 0.12 2.6E-06 64.6 11.9 47 521-567 936-984 (1259)
468 PHA02518 ParA-like protein; Pr 95.3 0.038 8.2E-07 60.8 7.1 63 888-952 77-145 (211)
469 PRK10751 molybdopterin-guanine 95.2 0.046 1E-06 59.2 7.3 26 823-848 4-29 (173)
470 KOG2484 GTPase [General functi 95.2 0.013 2.9E-07 69.4 3.3 58 823-899 250-308 (435)
471 PF13401 AAA_22: AAA domain; P 95.2 0.0077 1.7E-07 61.0 1.1 118 826-949 5-125 (131)
472 cd03695 CysN_NodQ_II CysN_NodQ 95.1 0.073 1.6E-06 50.4 7.5 63 1303-1378 17-80 (81)
473 cd04088 EFG_mtEFG_II EFG_mtEFG 95.0 0.058 1.3E-06 50.9 6.4 80 1049-1139 2-81 (83)
474 PF03144 GTP_EFTU_D2: Elongati 94.8 0.065 1.4E-06 49.3 6.2 70 1301-1378 1-74 (74)
475 KOG0446 Vacuolar sorting prote 94.8 0.034 7.3E-07 71.6 5.7 132 821-953 25-212 (657)
476 cd01120 RecA-like_NTPases RecA 94.8 0.07 1.5E-06 55.4 7.1 22 827-848 1-22 (165)
477 KOG0781 Signal recognition par 94.8 0.043 9.2E-07 66.4 5.8 69 886-954 465-544 (587)
478 cd02032 Bchl_like This family 94.7 0.12 2.7E-06 59.4 9.5 64 888-952 116-184 (267)
479 KOG0780 Signal recognition par 94.7 0.039 8.4E-07 65.2 5.2 28 820-847 96-123 (483)
480 PRK01889 GTPase RsgA; Reviewed 94.6 0.028 6.1E-07 67.7 4.1 23 826-848 196-218 (356)
481 PF05621 TniB: Bacterial TniB 94.6 0.096 2.1E-06 61.2 8.1 101 821-949 57-189 (302)
482 PRK12736 elongation factor Tu; 94.5 0.17 3.7E-06 61.9 10.7 75 1295-1378 218-294 (394)
483 TIGR03499 FlhF flagellar biosy 94.5 0.022 4.8E-07 66.5 2.8 24 824-847 193-216 (282)
484 KOG1533 Predicted GTPase [Gene 94.5 0.064 1.4E-06 59.8 6.0 67 888-954 97-177 (290)
485 KOG2423 Nucleolar GTPase [Gene 94.5 0.024 5.2E-07 66.7 2.8 28 824-851 306-333 (572)
486 PF13671 AAA_33: AAA domain; P 94.3 0.034 7.3E-07 57.3 3.3 21 827-847 1-21 (143)
487 cd03688 eIF2_gamma_II eIF2_gam 94.1 0.18 3.9E-06 50.4 7.7 40 1044-1083 2-49 (113)
488 cd04092 mtEFG2_II_like mtEFG2_ 94.1 0.13 2.7E-06 48.8 6.4 80 1049-1139 2-81 (83)
489 smart00382 AAA ATPases associa 94.1 0.13 2.7E-06 51.2 6.8 25 825-849 2-26 (148)
490 PF03266 NTPase_1: NTPase; In 93.7 0.041 8.9E-07 59.4 2.6 39 910-950 94-135 (168)
491 PLN03126 Elongation factor Tu; 93.7 0.14 3E-06 64.1 7.6 77 1294-1379 296-374 (478)
492 PF07015 VirC1: VirC1 protein; 93.7 0.085 1.8E-06 59.4 5.1 63 888-952 84-152 (231)
493 PRK14493 putative bifunctional 93.6 0.12 2.6E-06 60.1 6.5 22 826-847 2-23 (274)
494 PF13555 AAA_29: P-loop contai 93.6 0.059 1.3E-06 48.5 2.9 22 826-847 24-45 (62)
495 cd02035 ArsA ArsA ATPase funct 93.4 0.15 3.3E-06 57.1 6.8 66 888-953 114-183 (217)
496 TIGR00483 EF-1_alpha translati 93.4 0.18 3.9E-06 62.3 7.9 69 1285-1358 227-297 (426)
497 cd02117 NifH_like This family 93.4 0.24 5.1E-06 55.2 8.2 65 888-952 117-187 (212)
498 cd03692 mtIF2_IVc mtIF2_IVc: t 93.4 0.45 9.7E-06 45.4 8.8 80 1049-1141 2-84 (84)
499 PRK12337 2-phosphoglycerate ki 93.4 0.16 3.5E-06 62.6 7.1 169 824-1044 254-469 (475)
500 cd03116 MobB Molybdenum is an 93.3 0.095 2.1E-06 56.1 4.7 92 826-917 2-98 (159)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-186 Score=1625.27 Aligned_cols=850 Identities=69% Similarity=1.029 Sum_probs=728.4
Q ss_pred hcCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000570 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577 (1415)
Q Consensus 498 k~~~~~~~~~~k~~~~~~~~~e~~~~~~~eee~~~reeEE~~r~eEEe~~~~ee~er~~ee~~~~k~~~~kek~~~~k~e 577 (1415)
++....++..++.++.++++|++++++++++|+++|++||+.|+++|++++++++++++++.++++++++++++++++++
T Consensus 200 kk~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~Kae 279 (1064)
T KOG1144|consen 200 KKEAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAE 279 (1064)
T ss_pred ccchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444566667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcccccCccchhhhhhhccccCCCCCCcccc-hhhh---------
Q 000570 578 GKLLTGKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDS-IESK--------- 645 (1415)
Q Consensus 578 ~~~~~~k~~~e~~~~~~~~~~~~~~G--~~~~~~~~~~~~Kk~~~~~kkk~~~~~~~~~~~~~~~~-~~~~--------- 645 (1415)
|+|+|++|+++++++++.+.+|+++| +.++.... .++|+|+|.+++++..+.......++... .++.
T Consensus 280 GklLTakQK~~~a~aea~l~~ll~sg~~~~va~kdg-~~kKrpiY~nKKk~~rq~~~~~~s~~~~~~~~~~e~~~~~~~~ 358 (1064)
T KOG1144|consen 280 GKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDG-DSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKENHAGDVGS 358 (1064)
T ss_pred cccchHhhHHHHHHHHHHHHHHHhcCCCCCCCcccC-CcccCcccccccccccccccchhhhhhcccCchhhhccCCCCC
Confidence 99999999999999999999999997 44444433 37899999999987544433322222100 0000
Q ss_pred -hhHHHhhhhhcccCccccccccccccccccCCccccCCCCCccccccCCCcchhhhccCccccccccCCCCCcccccCC
Q 000570 646 -EKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSE 724 (1415)
Q Consensus 646 -~~~~e~~e~~~~~ddwE~~~~ee~e~~~~~~~~e~~~~~~e~~~eee~ee~~d~we~~s~e~~~~~~~~~~~~ee~~~~ 724 (1415)
..+.....++...++|+.++.+.... .......|++..+...+...|+|+....+..
T Consensus 359 ~d~~~~~~~e~~~~~e~e~~~~dv~~e------~g~~e~~~~~k~~~~~~~d~dd~ee~~~e~~---------------- 416 (1064)
T KOG1144|consen 359 VDTEEVDLEEDSNTDEKEGTPEDVDQE------EGEEEDDWDAKVDLAIDGDDDDDEEELQEEV---------------- 416 (1064)
T ss_pred CcchhhccccccCCcccccCCCChhhh------hcccchhhhccccccccccccchhhhhchhh----------------
Confidence 00000111233456666554322100 0001111333322211112222222111110
Q ss_pred CCchhhhhhhccCCCCCCcccceeeeccccchhhhhhhhHHHHHhhhhcccCCchhhccccCCCCCCcchhhhhhccccc
Q 000570 725 PEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEPA 804 (1415)
Q Consensus 725 ~~~~~~~~~k~~~rsp~~~~~~IcCIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1415)
.+..++...++...+ .+ + ..........+++..++.++.
T Consensus 417 -----~~e~~e~~~~~e~s~--------------------------------~~--~-~~a~~k~~~~~~d~~t~~~~~- 455 (1064)
T KOG1144|consen 417 -----DKELKEAEEEEEDSE--------------------------------KP--T-EDAAVKAISKVEDAATRTKRA- 455 (1064)
T ss_pred -----hhcccccccchhhcc--------------------------------cc--c-cccccccccccchhhhhhhhc-
Confidence 001111000000000 00 0 000000011122222222211
Q ss_pred ccCCCCCcCCCCcccccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccc
Q 000570 805 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
+...+........+..++|+||||||||||+|||.||++|+++||+.|++|||||+||++|||..+|++++..+.....
T Consensus 456 -~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 456 -KIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred -chhccCchhhccccchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhh
Confidence 1222333444556788999999999999999999999999999999999999999999999999999999988876654
Q ss_pred --cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 --LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 --~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
++.|+|++||||||++|+++|+||+++||+||||||+|||+.|||+++|++|+++++||||+|||||++|+|..++++
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l 1042 (1415)
+|..+|++|..+++++|..|+..|+.+|.++|||..|||.|.+++.+|++||+||++|+||++||.+|++|+|.+|..+|
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccc
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122 (1415)
Q Consensus 1043 ~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~g 1122 (1415)
.|.+.++|+||+|+.++|+||||+++|.||+||.||.|||||++|||+|+||+||+|+||+++||++.|+||++|++|+|
T Consensus 695 ~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~G 774 (1064)
T KOG1144|consen 695 AYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQG 774 (1064)
T ss_pred hhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccCCCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEe
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGI 1202 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~ 1202 (1415)
|+|++.||++++||++++|+.++++++++++.+|.+|.++|++|++++.||||||+|||||||||+||++ ++|||.++
T Consensus 775 iKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqastlgslealleflk~--~kIPv~gi 852 (1064)
T KOG1144|consen 775 IKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSRIDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGI 852 (1064)
T ss_pred chhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHHhhccCCceEEEecccchHHHHHHHHhh--cCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccce
Q 000570 1203 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEA 1282 (1415)
Q Consensus 1203 ~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~a 1282 (1415)
||||||++|||.|++|+++.+.||+||||+|+|..+|+.+|..+||+||+++|||||||.|+.|++++++.++.+..+.|
T Consensus 853 ~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~A 932 (1064)
T KOG1144|consen 853 GIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEA 932 (1064)
T ss_pred cccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1362 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~ 1362 (1415)
||||+|+|||+||||+++|+|+||.|.+|+|++||||||+..++|++|+|+||++||++|+.|++|++|||+|.+.| +.
T Consensus 933 vFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~~-~e 1011 (1064)
T KOG1144|consen 933 VFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEASN-GE 1011 (1064)
T ss_pred eeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEecCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 56
Q ss_pred ccccccccccCCCeEEEccchhhHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 000570 1363 QQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415 (1415)
Q Consensus 1363 ~~~~~gr~f~~~d~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~~~i~ 1415 (1415)
+|+||||||++.|+|||+|||+|||+|+.+||++||.++|+||++||++|+|+
T Consensus 1012 ~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr~el~~~dw~Lv~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 1012 EQKMFGRHFDMEDILYSHISRRSIDILKKAFRDELTKDDWQLVVKLKKLFGII 1064 (1064)
T ss_pred CcchhhcccCccchHHHHhhHhhHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 78999999999999999999999999999999999999999999999999996
No 2
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=7e-105 Score=983.02 Aligned_cols=575 Identities=40% Similarity=0.702 Sum_probs=524.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecc--cccccCCCCEEEEeCCCCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~--~~~~~~~~~l~iIDTPGHe 899 (1415)
.+|+|+|+||||+||||||||++|+++++..++.+|+|+++|++++++..+...+.... ....+..++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 47999999999999999999999999999999999999999999998765432211111 1122344679999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+.+|..+...+...++..|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEE
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1057 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk~ 1057 (1415)
...+..++..|.++||..++|+...+|++.+++|||||+||+||++|+.+|..+++.+|...|. +..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 9999999999999999999999988999999999999999999999999999888887766554 46789999999999
Q ss_pred EcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeee-eeeehhhhccccceeeeccccccccCC
Q 000570 1058 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1136 (1415)
Q Consensus 1058 ~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~-~~~~~keV~aa~gv~i~~~gL~~~~aG 1136 (1415)
+.|+|++++++|++|+|++||+|++++++||++++||+|++|+|++++|+.. .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999764 578899999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHHH
Q 000570 1137 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1216 (1415)
Q Consensus 1137 ~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A~ 1216 (1415)
+.|+|++ ++++..+++.++.++..+ .+.....||||||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9997774 445666666666665544 4566788999999999999999999997 5699999999999999999999
Q ss_pred hhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccc
Q 000570 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296 (1415)
Q Consensus 1217 ~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf 1296 (1415)
+|.+++|.||+||||||+++++|+.+|+++||+|++|+|||||||+|++||.+++++.+.+....+++||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99988999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCe
Q 000570 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1376 (1415)
Q Consensus 1297 ~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~ 1376 (1415)
+.++|+||||+|++|+|++|+++|.+++.++ |+|.||+|++++|++|++|+||||+|++| ||||||.+||+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD~ 546 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAIKDV-------VYGRTIHEGDT 546 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEEeCc-------cccCCCCCCCE
Confidence 9999999999999999999999976667444 99999999999999999999999999985 89999999999
Q ss_pred EEEccchhhHHHHHHHhhccCCHHHHHHHHHHhh
Q 000570 1377 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1410 (1415)
Q Consensus 1377 l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~ 1410 (1415)
|||.|||+||+.|+++||++||.++|++|.++-.
T Consensus 547 l~~~i~~~~~~~l~~~~~~~l~~~~~~~~~ei~~ 580 (590)
T TIGR00491 547 LYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAE 580 (590)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543
No 3
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=7e-103 Score=1000.04 Aligned_cols=566 Identities=40% Similarity=0.672 Sum_probs=527.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeeccc--ccccCCCCEEEEeCCCCcchhhH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~--~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..+|++| |||||++||+++|+.+++||||||||++++|++.+...|..+.. ...++.|+|+|||||||+.|..+
T Consensus 467 ~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~l 542 (1049)
T PRK14845 467 ANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSL 542 (1049)
T ss_pred eeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHH
Confidence 3578888 99999999999999999999999999999999877665554322 23456789999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.++++.||++|||||+++|+++||.+++.+++..++|+|||+||+|++++|..+++.+|...+..|.+.++.++..++.
T Consensus 543 r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 543 RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEEEcCcc
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk~~~G~G 1062 (1415)
.++.+|.++|++.++||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|+|
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G 702 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLG 702 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCce
Confidence 99999999999999999999999999999999999999999999998888876655554 4567899999999999999
Q ss_pred eEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeee-eeeehhhhccccceeeeccccccccCCCceEE
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~-~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v 1141 (1415)
+|++++|++|+|++||+|++|++++|++++||+|++|.||+++|+.+ .|.+++++.+++||+|+++||+.++||+.|+|
T Consensus 703 ~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v 782 (1049)
T PRK14845 703 TTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRI 782 (1049)
T ss_pred eEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999665 78999999999999999999999999999999
Q ss_pred eCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHHHhhhhc
Q 000570 1142 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEK 1221 (1415)
Q Consensus 1142 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~ 1221 (1415)
+.++++++.+++.++.++..+ .+.....||||||||+||||||+.+|+. .+|||++++||+||++||++|++|+++
T Consensus 783 ~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~~~ 858 (1049)
T PRK14845 783 VPTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYKQE 858 (1049)
T ss_pred eCCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhhcc
Confidence 999999988888888877665 3566788999999999999999999997 679999999999999999999999999
Q ss_pred ccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccccCCCC
Q 000570 1222 KKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDP 1301 (1415)
Q Consensus 1222 ~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf~~~~p 1301 (1415)
+|+||+||||||+++++|+.+|++.||+||+|+|||||||+|++||.+++++.+.+....+++||.++|+|.|||+.++|
T Consensus 859 ~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~ 938 (1049)
T PRK14845 859 NPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNP 938 (1049)
T ss_pred CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred eEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEEEcc
Q 000570 1302 IVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHI 1381 (1415)
Q Consensus 1302 ~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~s~i 1381 (1415)
+||||+|++|+|++|+|||..++.+ +|+|.||+|++++|++|++|+||||+|.++ +|||||++||+||+.|
T Consensus 939 ~IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~-------~~gr~~~~gD~l~~~i 1009 (1049)
T PRK14845 939 AIVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDEGETLYVDV 1009 (1049)
T ss_pred eEEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEEecc-------cccCCCCCCCEEEEec
Confidence 9999999999999999998766644 499999999999999999999999999875 8999999999999999
Q ss_pred chhhHHHHHHHhhccCCHHHHHHHHHHh
Q 000570 1382 SRKSIDVLKANYRDDLSMDEWRLLVKLK 1409 (1415)
Q Consensus 1382 ~r~~i~~lk~~~~~~~s~~~~~~~~~lk 1409 (1415)
+|.+|+.|+++||++||.++|++|.++-
T Consensus 1010 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 1037 (1049)
T PRK14845 1010 PESHVRELYHKYMDRLRDDEKEALKMYM 1037 (1049)
T ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 4
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.5e-102 Score=959.50 Aligned_cols=577 Identities=45% Similarity=0.730 Sum_probs=528.3
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeec-c-cccccCCCCEEEEeCCCC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-K-ANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v-~-~~~~~~~~~l~iIDTPGH 898 (1415)
..+|+|+|+||||+||||||||++|+++++..++.+||||++|++++++.......... . ....+..++++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 36899999999999999999999999999999999999999999998876432111110 0 012334567999999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+.|..++.++++.||++|||||+.+|+++||++++.++...++|+|||+||+|+++.|....+..|..++..+..+++..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEE
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1056 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk 1056 (1415)
|...+..+...|..+||+.++||...+|++.+++||+||++|+||.+|+..+..+++..|...+. +..+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999999988999999999999999999999999998888877766554 4567999999999
Q ss_pred EEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccce-eeeeeeehhhhccccceeeeccccccccC
Q 000570 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1135 (1415)
Q Consensus 1057 ~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~r-vk~~~~~~keV~aa~gv~i~~~gL~~~~a 1135 (1415)
.++|+|++++++|.+|+|++||.|++++..|++.++||+|++|.|++++| +.+.|.+++++.++++++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999889999999999999999999 77889999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHH
Q 000570 1136 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1215 (1415)
Q Consensus 1136 G~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A 1215 (1415)
|+.|+|+.+ +++..+.+.++.++..+ .+.....||||||||+||||||+++|.. .+|+|++++|||||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEI--RIETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhc--cccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 55666666666666554 2556778999999999999999999987 689999999999999999999
Q ss_pred HhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeeccccc
Q 000570 1216 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1295 (1415)
Q Consensus 1216 ~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~v 1295 (1415)
++|++++|.||+||||||+++++|+++|++.||+|++|+|||||||+|++||.+++++...+....+++||.++|+|.+|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999988887788899999999999999
Q ss_pred ccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCC
Q 000570 1296 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1375 (1415)
Q Consensus 1296 f~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d 1375 (1415)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|++++|++|++|+||||+|.+| +|||||.+||
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD 547 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISIDGP-------TVGRQIKEGD 547 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEEecc-------cccCCCCCCC
Confidence 99999999999999999999999886577 45699999999999999999999999999986 6999999999
Q ss_pred eEEEccchhhHHHHHHHhhccCCHHHHHHHHHHhhh
Q 000570 1376 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1411 (1415)
Q Consensus 1376 ~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~ 1411 (1415)
+|||+++|.++++|+++||++|+.++|+||.++-++
T Consensus 548 ~i~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 583 (586)
T PRK04004 548 ILYVDIPEEHAKILEQELKDELSDDEKEALKEILEI 583 (586)
T ss_pred EEEEEEEehhHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987665
No 5
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-96 Score=867.61 Aligned_cols=501 Identities=37% Similarity=0.482 Sum_probs=441.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.+|+|+||||||||||||||||+||+++|+.+++||||||||+|+++++.. ..++|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999997632 2367999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
++||.||++.||++||||++++|++|||+|+|++++.+++|||||+||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
...+..+|.++||+++.| ++.+.+||+||+||+||++||..|+.+.+.. ..+..+..+++|+|+|++..+|+
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEVL-ELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-hhhcCCCCcceEEEEEEEeccCC
Confidence 245667888899998865 6779999999999999999999998766544 44556678899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeeccccccccCCCceEE
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v 1141 (1415)
|++++++|++|||+.||.|++|+.+|++.+.++.++.|-+....+....+...++|.+|.+..++++++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999999988888877788888899999999999999999999988887
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEeeeCccchhhHHHHH
Q 000570 1142 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1216 (1415)
Q Consensus 1142 ~~--~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~iG~v~~~DV~~A~ 1216 (1415)
+. ...........+...+..+..+.+....||+|||||+||||||..+|+ .+++++.|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 65 222222333333333444332334456899999999999999998874 5678888999999999999999999
Q ss_pred hhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccc
Q 000570 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296 (1415)
Q Consensus 1217 ~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf 1296 (1415)
+ ++|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++++..++......+|+.+.++|
T Consensus 356 a------s~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~---- 425 (509)
T COG0532 356 A------SDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP---- 425 (509)
T ss_pred h------cCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccceEEEEEEEcC----
Confidence 8 579999999999999999999999999999999999999999999999998877764444666654444
Q ss_pred cCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCC
Q 000570 1297 NKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1375 (1415)
Q Consensus 1297 ~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d 1375 (1415)
+.|.|+||+|++|.|++|+++|+ |++.+||.|+|.||++++++|.+|++|+||||+|+|| +||.+||
T Consensus 426 --k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~----------~di~~gD 493 (509)
T COG0532 426 --KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENY----------RDIKEGD 493 (509)
T ss_pred --CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCc----------ccCCCCC
Confidence 47999999999999999999997 6999999999999999999999999999999999986 4999999
Q ss_pred eEEEccchhhHHHHH
Q 000570 1376 ELVSHISRKSIDVLK 1390 (1415)
Q Consensus 1376 ~l~s~i~r~~i~~lk 1390 (1415)
+||+++++.+.+.|+
T Consensus 494 ~le~~~~~~~~r~l~ 508 (509)
T COG0532 494 ILEVFEPVEVKRTLK 508 (509)
T ss_pred EEEEEEEEeechhhc
Confidence 999999999888764
No 6
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-84 Score=747.11 Aligned_cols=479 Identities=30% Similarity=0.468 Sum_probs=406.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
....|+|+|+||||||||||||||+||++.|+.+++||||||||+|.++... +..|+|+|||||.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~---------------G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS---------------GKSITFLDTPGHA 212 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC---------------CCEEEEecCCcHH
Confidence 3456999999999999999999999999999999999999999999987653 2459999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|..||.||+..+||+||||.+.+|++|||.++|.+++..++|+||+|||||++ .++
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~---------------- 269 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GAN---------------- 269 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCC----------------
Confidence 999999999999999999999999999999999999999999999999999985 344
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEc
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIE 1059 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~ 1059 (1415)
+..++.+|..+|+..+ ++|+++++||+||++|+||+.|.+.++. +...|..+..+..+++++|+|+...+
T Consensus 270 ---pekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill-~Ae~mdLkA~p~g~~eg~VIES~vdk 339 (683)
T KOG1145|consen 270 ---PEKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILL-LAEVMDLKADPKGPAEGWVIESSVDK 339 (683)
T ss_pred ---HHHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHH-HHHHhhcccCCCCCceEEEEEeeecC
Confidence 3567778899998876 6799999999999999999999988874 34667778888999999999999999
Q ss_pred CcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeecccccc-ccCCC
Q 000570 1060 GHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGT 1137 (1415)
Q Consensus 1060 G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~-~~aG~ 1137 (1415)
|+|.+.+++|..|||+.|+.+ |||. .+++||+|++... +.|. +.++.++-+.||.. ++||+
T Consensus 340 g~G~~aT~iVkrGTLkKG~vl-V~G~---~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP~aGD 402 (683)
T KOG1145|consen 340 GRGPVATVIVKRGTLKKGSVL-VAGK---SWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLPIAGD 402 (683)
T ss_pred CccceeEEEEeccccccccEE-EEec---hhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCCCCCc
Confidence 999999999999999999955 5654 4899999986542 2222 22344555568877 79999
Q ss_pred ceEEeCCCccHHHHHHHHHHH-----HHH--------------HH--------h-----hhhccC----CceEEecCCcc
Q 000570 1138 GLYVVGPDDDLEDVKEEAMED-----MKS--------------VM--------S-----RIDKSG----EGVCVQASTLG 1181 (1415)
Q Consensus 1138 ~~~v~~~e~~~~~~~~~~~~~-----~~~--------------~~--------~-----~i~~~~----~gv~vkadt~G 1181 (1415)
-++.|.+++.++.+-..+... .+. .+ . +++... .+||||+|++|
T Consensus 403 ~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~G 482 (683)
T KOG1145|consen 403 EVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQG 482 (683)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccc
Confidence 999999998776552211100 000 00 0 122222 46999999999
Q ss_pred cHHHHHHHh---ccCCceeeeEEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhc
Q 000570 1182 SLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYH 1258 (1415)
Q Consensus 1182 SlEAl~~~L---~~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~ 1258 (1415)
|+|||++.| .+++|++.|++++||+||++||.+|++ +.|||+||||+.++...++|...||+|+.|+||||
T Consensus 483 S~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~ 556 (683)
T KOG1145|consen 483 SAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYR 556 (683)
T ss_pred hHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehhHHHH
Confidence 999998876 567899999999999999999999997 78999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHH-hhccceeeceeeeecccccccC--CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEee
Q 000570 1259 LFDQFTAYINNLKEEKKR-EAADEAVFPCVLKILPNCVFNK--KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIAS 1334 (1415)
Q Consensus 1259 L~d~~~~~~~~~~~~~~~-e~~~~av~p~~l~i~~~~vf~~--~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~S 1334 (1415)
|||++++.|...+++..+ +..|+|. ++.+| .|+. +.-.||||+|.+|.|.+.+.|++ |+|.+||.|.|.|
T Consensus 557 LieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F---~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~S 630 (683)
T KOG1145|consen 557 LIEDVRELLSERLPPVEEQEVVGEAE---VLATF---DIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDS 630 (683)
T ss_pred HHHHHHHHHHhhCCCceEEeecccee---eeeeE---eeccccccccccceEeecceEeecceEEEEeCCcEEEEechhH
Confidence 999999999988877654 4568885 34443 3332 33359999999999999999996 8999999999999
Q ss_pred ccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEEEccchh
Q 000570 1335 IENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1384 (1415)
Q Consensus 1335 lk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~r~ 1384 (1415)
|+|++++|.+|++|.||||.+.++|. .|.+||.|.|+-+|.
T Consensus 631 lKh~KedV~~vkkg~ECGl~~~d~~~---------~f~~GD~i~~ye~k~ 671 (683)
T KOG1145|consen 631 LKHLKEDVTEVKKGHECGLTFDDGNE---------DFKEGDKIQCYEKKR 671 (683)
T ss_pred HhhhhhhhhhhcCCCeeeeEeccCCc---------CCCcCCEEEEeehhh
Confidence 99999999999999999999998873 699999999998665
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.9e-78 Score=747.06 Aligned_cols=474 Identities=32% Similarity=0.460 Sum_probs=391.4
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
...|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... ..|+|||||||++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 4569999999999999999999999999999999999999999987765321 1599999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..+|.++++.+|++|||||+++|+++||.++|.+++..++|+|||+||+|+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G 1060 (1415)
..+...|...|+... .|+..+++||+||++|+||.+|+.+|..+ ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 122333444444332 34566899999999999999999998643 22222223456789999999999999
Q ss_pred cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecccccc-ccCCCce
Q 000570 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1139 (1415)
Q Consensus 1061 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~-~~aG~~~ 1139 (1415)
+|++++++|++|+|++||.|+++ +.+++||+|++++.. ..+++.+++ .+.+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~----~~~~kVr~l~~~~g~----------~v~~a~~g~--~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVG----AAYGRVRAMIDENGK----------SVKEAGPSK--PVEILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEEC----CCccEEEEEECCCCC----------CCCEECCCC--EEEEeCCCCCCCCCCEE
Confidence 99999999999999999999874 346789998875421 122333444 444558987 4999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEecCCcccHHHHHHHhc---cCCceeeeE
Q 000570 1140 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1200 (1415)
Q Consensus 1140 ~v~~~e~~~~~~~~~~~~~-------------~~~~~~~i~---~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~ 1200 (1415)
+++.++++++.+.+..... +..++..+. ....+|||||||+||||||+++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999998877664432221 122222222 244689999999999999988764 567899999
Q ss_pred EeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHh-hc
Q 000570 1201 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AA 1279 (1415)
Q Consensus 1201 ~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e-~~ 1279 (1415)
+++||+||++||++|++ ++|+||||||++++.++++|++.||+|++|+|||||+|+|++||.+++++...+ ..
T Consensus 419 ~~~vG~i~~~Dv~~a~~------~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASA------SNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHh------cCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 99999999999999998 489999999999999999999999999999999999999999999998887544 34
Q ss_pred cceeeceeeeecccccccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEec
Q 000570 1280 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357 (1415)
Q Consensus 1280 ~~av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~ 1357 (1415)
+.|. |+. ||+. +.|+||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|++|++|+||||.|.+
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 564 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN 564 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec
Confidence 5553 333 7775 55999999999999999999997 789999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCCeEEEccc
Q 000570 1358 SNSEEQQKMFGRHFDIEDELVSHIS 1382 (1415)
Q Consensus 1358 ~~~~~~~~~~gr~f~~~d~l~s~i~ 1382 (1415)
|| +|.+||+|+++-.
T Consensus 565 ~~----------~~~~gD~i~~~~~ 579 (587)
T TIGR00487 565 YN----------DIKEGDIIEAFEV 579 (587)
T ss_pred cc----------cCCCCCEEEEEEE
Confidence 86 7999999999753
No 8
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.9e-77 Score=748.16 Aligned_cols=472 Identities=33% Similarity=0.476 Sum_probs=394.6
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
...|+|+|+||||+||||||||++|+++++..++++|||+++|++.+.+.. ..|+|||||||..
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 467999999999999999999999999999999999999999998876642 2499999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..++.++++.+|++|||||+++|+++||.++|.++..+++|+|||+||||+.. +++
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-------a~~---------------- 406 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-------ANP---------------- 406 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-------cCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 121
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G 1060 (1415)
..+...|...++..+ .|++.+++||+||++|.||.+|+.+|.... ..+.....+..++.+.|++++.++|
T Consensus 407 ---e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 407 ---DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ---HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 112223333343322 345678999999999999999999987643 2222234456678999999999999
Q ss_pred cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccccc-cCCCc
Q 000570 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1138 (1415)
Q Consensus 1061 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~~-~aG~~ 1138 (1415)
+|++++++|++|+|+.||.|++ |+.+++||.|++.+. ..|. +.+|..+.+.||... .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~----g~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVA----GTTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEE----CCcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 9999999999999999999876 356888998875431 1222 345666667799886 99999
Q ss_pred eEEeCCCccHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEecCCcccHHHHHHHh---ccCCceeee
Q 000570 1139 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1199 (1415)
Q Consensus 1139 ~~v~~~e~~~~~~~~~~~~-------------~~~~~~~~i~~~---~~gv~vkadt~GSlEAl~~~L---~~~~~~i~i 1199 (1415)
|+++.++..++.+.+.... .+..++..+... ..+|||||||+||+|||..+| .+++++|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999998877766432211 133333344222 258999999999999998765 567899999
Q ss_pred EEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhh-
Q 000570 1200 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1278 (1415)
Q Consensus 1200 ~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~- 1278 (1415)
++++||+||++||++|++ ++|+||||||++++.++++|+..||.|++|+|||||||+|+.||.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999997 6899999999999999999999999999999999999999999999988776554
Q ss_pred ccceeeceeeeecccccccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEe
Q 000570 1279 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1356 (1415)
Q Consensus 1279 ~~~av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~ 1356 (1415)
.|.|. |. .||+. +.|.||||+|++|.|++|+++|| |+|.+||.|+|.||+|++++|.+|++|+||||.|.
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~ 765 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLE 765 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEee
Confidence 56664 33 26774 45999999999999999999998 78999999999999999999999999999999999
Q ss_pred cCCCccccccccccccCCCeEEEccc
Q 000570 1357 GSNSEEQQKMFGRHFDIEDELVSHIS 1382 (1415)
Q Consensus 1357 ~~~~~~~~~~~gr~f~~~d~l~s~i~ 1382 (1415)
+|| +|.+||+|+++..
T Consensus 766 ~~~----------d~~~gD~ie~~~~ 781 (787)
T PRK05306 766 NYN----------DIKEGDIIEAYEM 781 (787)
T ss_pred ccc----------cCCCCCEEEEEEE
Confidence 997 7999999999853
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=4.2e-75 Score=727.09 Aligned_cols=474 Identities=30% Similarity=0.436 Sum_probs=389.2
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
..|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... .....|+|||||||+.|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~------------~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK------------DENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec------------CCceEEEEEECCcHHHH
Confidence 458999999999999999999999999999889999999999887654310 01246999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+++..||++|||||+.+|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999962 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
..+...|..+++... .+++.+|+|++||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+|.
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 122223333332221 2356789999999999999999999876642 2222234456789999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccc-cccCCCce
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLE-HAIAGTGL 1139 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~-~~~aG~~~ 1139 (1415)
|++++++|.+|+|+.||.|+++ +.+++||.|+.+.. ..+. +.+|..+.+.||. .+.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998763 35678888875431 1222 3456666778995 46789999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHH---HhhhhccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEee
Q 000570 1140 YVVGPDDDLEDVKEEAMEDM----------KSV---MSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1203 (1415)
Q Consensus 1140 ~v~~~e~~~~~~~~~~~~~~----------~~~---~~~i~~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~ 1203 (1415)
+|+.++..++.+.+...... ..+ +........+|||||||+||||||+++|. +++++|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999887776644322111 111 11123345689999999999999988864 567999999999
Q ss_pred eCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhh-ccce
Q 000570 1204 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1282 (1415)
Q Consensus 1204 iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~-~~~a 1282 (1415)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|+++|.+++++...+. .|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999998775543 4555
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1361 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~ 1361 (1415)
.|. .||+.++|.||||+|++|.|++|+++|| |++.+||.|+|.||+|++++|.+|++|+||||.|.+||
T Consensus 653 ------~v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-- 722 (742)
T CHL00189 653 ------EVK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-- 722 (742)
T ss_pred ------Eee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC--
Confidence 343 3788777999999999999999999998 78999999999999999999999999999999999998
Q ss_pred cccccccccccCCCeEEEcc
Q 000570 1362 EQQKMFGRHFDIEDELVSHI 1381 (1415)
Q Consensus 1362 ~~~~~~gr~f~~~d~l~s~i 1381 (1415)
.|.+||+|.++.
T Consensus 723 --------d~~~gD~ie~y~ 734 (742)
T CHL00189 723 --------LWQSGDKIHAFE 734 (742)
T ss_pred --------CCCcCCEEEEEE
Confidence 699999998864
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.3e-31 Score=304.75 Aligned_cols=259 Identities=26% Similarity=0.396 Sum_probs=201.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-------------------------------v~~geagGITq~iga~~~~~~~i~~ 874 (1415)
..++++||||||||||+.+|++.. ....+.+|+|.+++...|.++.
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k--- 84 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK--- 84 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC---
Confidence 348999999999999999998521 1122346777777777666543
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceEEE
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVA 946 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVa 946 (1415)
+.|+|||||||.+|...+..|++++|+||||||+..| +.+||++|+-+++.+|+ .+||+
T Consensus 85 -------------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 -------------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred -------------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 3599999999999999999999999999999999998 99999999999999998 78999
Q ss_pred EEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 947 INKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
+||||.+. |.. .+|.+....+...+...||+. .+++||||||++|.||...
T Consensus 152 vNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCccccc
Confidence 99999984 754 345555566666666777763 3589999999999999766
Q ss_pred HHHHHHHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcC
Q 000570 1027 LLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLT 1098 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~ 1098 (1415)
-...-||-.+.|++.|+. +.||+++|.+++.+.|.|++..++|.+|.|++|+.|++.+..
T Consensus 203 s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~------------ 270 (428)
T COG5256 203 SENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG------------ 270 (428)
T ss_pred CcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc------------
Confidence 544444445566666642 457999999999999999999999999999999999987643
Q ss_pred CCCCccceeeeeeeehhhhcccc-c--eeeeccccccccCCCceEEeCCC
Q 000570 1099 PHPMKELRVKGTYLHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1099 p~p~~e~rvk~~~~~~keV~aa~-g--v~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
...+|+++++||.++..+. | |.+.++|+.......+.++.+++
T Consensus 271 ----~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 271 ----VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred ----ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 2345777888888887664 3 66777777654444444444443
No 11
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=4.1e-30 Score=312.08 Aligned_cols=259 Identities=24% Similarity=0.317 Sum_probs=188.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~--v-----------------------------~~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++.. + .....+|+|.+++.+.+.+.
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 359999999999999999998521 1 11124667777665555433
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC-------ChhHHHHHHHHHhcCCc-eEEE
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 946 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVa 946 (1415)
...|+|||||||.+|...+.+|++.+|+||||||+..|+ .+||.+||.++..+++| +|||
T Consensus 84 ------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 84 ------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred ------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 346999999999999999999999999999999999998 48999999999999997 6799
Q ss_pred EEeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhh
Q 000570 947 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 947 INKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
|||||+.. +|. ...|...+..+...|...|++. ..+||||+||++|+||.+
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCccc
Confidence 99999631 332 2334445556666676666642 248999999999999975
Q ss_pred HHHHHHHHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhc
Q 000570 1026 LLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1097 (1415)
Q Consensus 1026 Ll~~L~~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll 1097 (1415)
.-..+.||..+.|.+.| ....+|++.|.+++.+.|.|++++|.|.+|+|++||.|++++++ ..
T Consensus 204 ~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~------- 274 (446)
T PTZ00141 204 KSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VT------- 274 (446)
T ss_pred CCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cE-------
Confidence 32222222222222222 23457999999999999999999999999999999999987643 22
Q ss_pred CCCCCccceeeeeeeehhhhcc---ccceeeeccccccccCCCceEEeCC
Q 000570 1098 TPHPMKELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1098 ~p~p~~e~rvk~~~~~~keV~a---a~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+|+++++|+..+.. +..+.|.+.+++......+++++.+
T Consensus 275 -------~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 275 -------TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred -------EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 345555666555543 3447777777766555566666654
No 12
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=8.8e-30 Score=318.82 Aligned_cols=251 Identities=29% Similarity=0.439 Sum_probs=191.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.||+++||+|||||||+++|++.+. .....+|||++++..++.... ...++|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 3799999999999999999997543 334557999999877654321 1248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..|+..+|++|||||+++|+++||.+++.++...++|. |||+||||++. .. .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-------~~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-------EA--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-------HH--------------HHHH
Confidence 99999999999999999999999999999999999999985 79999999962 10 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
....+...+...++ ..+|+|||||++|.||++|+..|..+..+. .....+|++.|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233333433332 236899999999999999999987654321 12456899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cceeeeccc-cccccCCC
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQG-LEHAIAGT 1137 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~g-L~~~~aG~ 1137 (1415)
|++++|+|.+|+|++||.|.++|+. ...+|+++++|+..+..+ +.+.|.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~----------------~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVN----------------KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCC----------------CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 9999999999999999999987643 124566777777666544 336666676 66555556
Q ss_pred ceEEeCC
Q 000570 1138 GLYVVGP 1144 (1415)
Q Consensus 1138 ~~~v~~~ 1144 (1415)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 6666655
No 13
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.5e-29 Score=315.90 Aligned_cols=254 Identities=29% Similarity=0.408 Sum_probs=194.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 369999999999999999999743 3334468999999887766543 248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..++..+|++|||||+.+|+++||.+++.++...++| +|||+||||++. ... +..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~--------------~~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEE--------------IKR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHH--------------HHH
Confidence 9999999999999999999999999999999999999999 999999999962 110 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
....+...+...++. ..+++||+||++|.||.+|+..|..++..... .....+|++.|..+|.+.|.
T Consensus 124 ~~~ei~~~l~~~~~~-----------~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIFL-----------KNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCCC-----------CCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 111222223322221 24799999999999999999988776543211 12356899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cceeeeccccccccCCCc
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTG 1138 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~ 1138 (1415)
|++++|.|.+|+|++||.|+++|++ ...+|+++++|+..+..| +.+.|.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~----------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN----------------HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC----------------ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987643 134567777777766644 447788888876555555
Q ss_pred eEEeCCC
Q 000570 1139 LYVVGPD 1145 (1415)
Q Consensus 1139 ~~v~~~e 1145 (1415)
+++..+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 5555443
No 14
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=1.2e-29 Score=307.84 Aligned_cols=258 Identities=23% Similarity=0.298 Sum_probs=188.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~~~~~i~~~ 875 (1415)
+|+|+||+|||||||+++|+...- .....+|||.+++.++|.+.
T Consensus 9 ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~----- 83 (447)
T PLN00043 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT----- 83 (447)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-----
Confidence 499999999999999999984211 01123566666655555433
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC-------ChhHHHHHHHHHhcCCc-eEEEE
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVAL 947 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVaI 947 (1415)
.+.++|||||||.+|...+..|++.+|++|||||+..|. .+||+++|.++..+++| +|||+
T Consensus 84 -----------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 84 -----------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred -----------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 346999999999999999999999999999999999983 38999999999999995 78899
Q ss_pred Eeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 948 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 948 NKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
||||+.. .| .+..|...+..+...|...|+.. ..++|||+||++|+||.+.
T Consensus 153 NKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 153 NKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIER 204 (447)
T ss_pred EcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEecccccccccc
Confidence 9999851 12 12345555566666777777652 2479999999999999653
Q ss_pred HHHHHHHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcC
Q 000570 1027 LLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLT 1098 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~ 1098 (1415)
...+.|+-.+.|++.| ....||++.|.+++.+.|.|+++.|+|.+|+|++||.|++++++ .
T Consensus 205 ~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~--------- 273 (447)
T PLN00043 205 STNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--L--------- 273 (447)
T ss_pred ccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--C---------
Confidence 3222222222232222 12457999999999999999999999999999999999886543 1
Q ss_pred CCCCccceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1099 PHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1099 p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|+++++++..+..| ..+.|.+.+++......+++++..
T Consensus 274 -----~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 274 -----TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred -----EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 23456666666655543 347777778766555666666654
No 15
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.7e-30 Score=299.19 Aligned_cols=224 Identities=27% Similarity=0.346 Sum_probs=175.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeceeEecccccceeeeecccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
.+++|| ++|+.|+|||||||.|+|+... .+..+.+|||...-.+++.|..
T Consensus 57 ~~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~------------- 121 (650)
T KOG0462|consen 57 VENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD------------- 121 (650)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-------------
Confidence 378999 9999999999999999998421 2233467888665544443322
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
-...-|++||||||.+|+..+.|.+..||+|||||||.+|+++||...+.++..+|+.+|.||||||+. .++.
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adp 194 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADP 194 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCH
Confidence 011459999999999999999999999999999999999999999999999999999999999999995 4443
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e-~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
... ..++.+ .++. .-+++.+||++|.|+..||+.|++..+++ ...
T Consensus 195 e~V-------------------~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP---~~~ 240 (650)
T KOG0462|consen 195 ERV-------------------ENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPP---KGI 240 (650)
T ss_pred HHH-------------------HHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCC---CCC
Confidence 322 222211 1222 12799999999999999999999877654 334
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCC
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1099 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p 1099 (1415)
...||++.|++++++..+|.++.+.|.+|.|+.||.|..+.+....-.+.-.++.|
T Consensus 241 ~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p 296 (650)
T KOG0462|consen 241 RDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRP 296 (650)
T ss_pred CCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEecc
Confidence 57789999999999999999999999999999999999887653333333344444
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=4e-29 Score=300.10 Aligned_cols=256 Identities=24% Similarity=0.354 Sum_probs=182.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ...
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~~ 76 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KRH 76 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------CcE
Confidence 3499999999999999999986321 11125777877765544332 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.++++.+|++|||||+.+|+++||.++|.++..+++| +|||+||||++. ...+.
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~~--- 147 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEELL--- 147 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHHH---
Confidence 89999999999999999999999999999999999999999999999999999 678999999862 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC--------ChhhHHHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMVE 1040 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe--------GI~dLl~~L~~l~~~~l~e 1040 (1415)
......+...|...++. +..+|+||+||++|. ++..|++.|..+++.+
T Consensus 148 -----------~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~--- 203 (394)
T PRK12736 148 -----------ELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP--- 203 (394)
T ss_pred -----------HHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC---
Confidence 11112344445555543 235799999999994 4556666555443211
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
......+|++.|.++|.++|.|++++|+|.+|+|++||.|+++|... ....+|+++++|+..+..+
T Consensus 204 ~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~V~sI~~~~~~~~~a 269 (394)
T PRK12736 204 ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE--------------TQKTVVTGVEMFRKLLDEG 269 (394)
T ss_pred CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCC--------------CeEEEEEEEEECCEEccEE
Confidence 11235679999999999999999999999999999999999876421 1234566667766655544
Q ss_pred c---ceeeeccccccccCCCceEEeCC
Q 000570 1121 Q---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1121 ~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
. -+.|++.|++......+.+++.+
T Consensus 270 ~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 270 QAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred CCCCEEEEEECCCcHHhCCcceEEecC
Confidence 2 25556666654444455555543
No 17
>PLN03127 Elongation factor Tu; Provisional
Probab=99.96 E-value=1e-28 Score=299.51 Aligned_cols=259 Identities=24% Similarity=0.349 Sum_probs=183.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..+|+|+||+|||||||+++|++... .....+|||++++...+.+.. .
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~----------------~ 124 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK----------------R 124 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC----------------e
Confidence 34599999999999999999973210 122347888887766655432 3
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ...+..
T Consensus 125 ~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~~- 197 (447)
T PLN03127 125 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELLE- 197 (447)
T ss_pred EEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHHH-
Confidence 589999999999999999999999999999999999999999999999999999 578999999962 111110
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC---CCCC-------hhhHHHHHHHHHHHH
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~---tGeG-------I~dLl~~L~~l~~~~ 1037 (1415)
.+. ..+...|...++. +..+|+||+||+ +|.| ++.|++.|..+++.+
T Consensus 198 ----------~i~---~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 198 ----------LVE---MELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred ----------HHH---HHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 011 1222333333332 245899999987 4555 566666665543311
Q ss_pred HHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhh
Q 000570 1038 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1117 (1415)
Q Consensus 1038 l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV 1117 (1415)
.-....+|++.|.++|.+.|.|++++|+|.+|+|++||.|+++|.. |......+|+++++|+..+
T Consensus 255 ---~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~------------~~g~~~~~VksI~~~~~~v 319 (447)
T PLN03127 255 ---VRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR------------PGGPLKTTVTGVEMFKKIL 319 (447)
T ss_pred ---CcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC------------CCCcEEEEEEEEEEECcEe
Confidence 1123457999999999999999999999999999999999887642 1101234567777777665
Q ss_pred cccc---ceeeeccccccccCCCceEEeCC
Q 000570 1118 KAAQ---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1118 ~aa~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+. .+.|.+.|++......+++++.+
T Consensus 320 ~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 320 DQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 5443 36666667655444455555543
No 18
>PLN03126 Elongation factor Tu; Provisional
Probab=99.96 E-value=6.9e-29 Score=302.35 Aligned_cols=256 Identities=24% Similarity=0.323 Sum_probs=183.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|||.+++..++.+. ...
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~~ 145 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NRH 145 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------CcE
Confidence 3489999999999999999985211 22345788888776666543 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+|++.+|++|||||+..|+++||.++|.++..+++| +|||+||||++. ...+
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~---- 215 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL---- 215 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH----
Confidence 89999999999999999999999999999999999999999999999999999 788999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh------------------hhHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLLL 1030 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI------------------~dLl~~L 1030 (1415)
+......+...|...||. ...+|+||+||++|.++ +.|++.|
T Consensus 216 ----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l 275 (478)
T PLN03126 216 ----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAV 275 (478)
T ss_pred ----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHH
Confidence 111122445556666653 23589999999999644 2222222
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
..+.+ ...-....||++.|.++|.+.|.|+++.|.|.+|+|++||.|++++..... ..+|+++
T Consensus 276 ~~~~~---~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~--------------~~~VksI 338 (478)
T PLN03126 276 DSYIP---IPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETR--------------STTVTGV 338 (478)
T ss_pred HHhCC---CCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCce--------------EEEEEEE
Confidence 22110 001123467999999999999999999999999999999999987542112 2445666
Q ss_pred eeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
+.++..+..+ ..+.|.+.+++......+++++.+
T Consensus 339 ~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 339 EMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 6665555433 346676677665555556665554
No 19
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=2e-28 Score=294.26 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=182.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ...
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~~ 76 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NRH 76 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------CcE
Confidence 3499999999999999999986211 11225778877655544332 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+++..+|++|||||+..|+.+||.++|.++...++|.| ||+||||++. .....
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~~--- 147 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEELL--- 147 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHHH---
Confidence 8999999999999999999999999999999999999999999999999999966 5899999962 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~~l 1038 (1415)
......+...|...++. +..+++||+||++|. |++.|++.|..+++.+
T Consensus 148 -----------~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p- 205 (396)
T PRK12735 148 -----------ELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP- 205 (396)
T ss_pred -----------HHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC-
Confidence 11112333344444432 235899999999995 5666776665543211
Q ss_pred HHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc
Q 000570 1039 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118 (1415)
Q Consensus 1039 ~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~ 1118 (1415)
.-....+|++.|.++|.+.|.|++++|+|.+|+|++||.|++++... ....+|+++++|+..+.
T Consensus 206 --~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~v~ 269 (396)
T PRK12735 206 --ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE--------------TQKTTVTGVEMFRKLLD 269 (396)
T ss_pred --CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCC--------------CeEEEEEEEEECCeEeC
Confidence 11234679999999999999999999999999999999998876421 12345666676666555
Q ss_pred cc---cceeeeccccccccCCCceEEeCC
Q 000570 1119 AA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1119 aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+ ..+.|.+.|++......+.+++.+
T Consensus 270 ~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 270 EGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred EECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 33 335666666654444445555443
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=9.2e-29 Score=299.33 Aligned_cols=282 Identities=20% Similarity=0.237 Sum_probs=188.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEeccc---ccceeee--ecccc------------c
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE---NIRERTR--ELKAN------------A 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~---~i~~~t~--~v~~~------------~ 883 (1415)
.+.+|+++||+|||||||+.+|++.+. .....+|||+++|+.++.+. ....... .+... .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 345699999999999999999997654 34557899999998765321 0000000 00000 0
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCC
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~ 961 (1415)
......++|||||||+.|...+.+|++.+|++|||||+.+| +++||.+++.++..+++| +|||+||||++. .
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------~ 186 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------E 186 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------H
Confidence 00124699999999999999999999999999999999997 799999999999999985 889999999962 0
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 962 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 962 a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
. .+...+..+...|... +...+|+||+||++|.||+.|++.|...++.. .
T Consensus 187 ~---------------~~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~---~ 236 (460)
T PTZ00327 187 A---------------QAQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIP---K 236 (460)
T ss_pred H---------------HHHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---C
Confidence 1 1111222232223221 12357999999999999999999887544321 1
Q ss_pred hhcccccceEEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeee
Q 000570 1042 LTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1113 (1415)
Q Consensus 1042 l~~~~~~~~~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~ 1113 (1415)
.....++++.|..+|.+.| +|++++|.|.+|+|++||.|.+.+..-. ... ..-+.+.| ...+|++++++
T Consensus 237 r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~-~~~-~g~~~~~~-~~~~VksI~~~ 313 (460)
T PTZ00327 237 RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIIS-KDS-GGEFTCRP-IRTRIVSLFAE 313 (460)
T ss_pred CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCccc-ccc-cCcccccc-ceEEEEEEEEC
Confidence 2235678999999887765 7999999999999999999998764200 000 00000111 12467777877
Q ss_pred hhhhcccc-c--eeeecc---ccccccCCCceEEeCC
Q 000570 1114 HKQIKAAQ-G--IKITAQ---GLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1114 ~keV~aa~-g--v~i~~~---gL~~~~aG~~~~v~~~ 1144 (1415)
+..+..|. | +.|.+. ++.......+++++.+
T Consensus 314 ~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~ 350 (460)
T PTZ00327 314 NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYP 350 (460)
T ss_pred CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcC
Confidence 77666543 2 444433 3333333345555544
No 21
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=2.4e-28 Score=294.69 Aligned_cols=256 Identities=25% Similarity=0.342 Sum_probs=179.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
..|+|+||+|||||||+++|++... .....+|+|.++...++.+. ...
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~~ 76 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NRH 76 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------CeE
Confidence 3499999999999999999996421 11223777777766555432 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ....
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~~~---- 146 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DEEL---- 146 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HHHH----
Confidence 89999999999999999999999999999999999999999999999999999 778999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh------------------hhHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLLL 1030 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI------------------~dLl~~L 1030 (1415)
+......+...|...++. ...+|++|+||++|.++ +.|++.|
T Consensus 147 ----------~~~~~~~l~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l 206 (409)
T CHL00071 147 ----------LELVELEVRELLSKYDFP----------GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAV 206 (409)
T ss_pred ----------HHHHHHHHHHHHHHhCCC----------CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHH
Confidence 111122344455555543 13579999999999854 2333333
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
..+++. ..-....+|++.|.+++.++|.|++++|+|.+|+|++||.|+++|.... ...+|+++
T Consensus 207 ~~~~~~---p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--------------~~~~VksI 269 (409)
T CHL00071 207 DSYIPT---PERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--------------KTTTVTGL 269 (409)
T ss_pred HhhCCC---CCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--------------cEEEEEEE
Confidence 222110 0112245799999999999999999999999999999999987653211 23456666
Q ss_pred eeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
++++..+..+ .-|.|.+.+++......+.+++.+
T Consensus 270 ~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 270 EMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 6666554433 225555556554434444444433
No 22
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=3.2e-28 Score=292.31 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=182.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ...
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 76 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KRH 76 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------CeE
Confidence 3499999999999999999986311 11225788877765544332 235
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++..+++|+| ||+||||++. ...
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~----- 145 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE----- 145 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHH-----
Confidence 8999999999999999999999999999999999999999999999999999986 6899999962 111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~~l 1038 (1415)
.+......+...|...|+. ...+|++|+||++|. |++.|++.|..+++.+
T Consensus 146 ---------~~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p- 205 (396)
T PRK00049 146 ---------LLELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP- 205 (396)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC-
Confidence 0111112344455555542 235899999999986 4556666655432211
Q ss_pred HHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc
Q 000570 1039 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118 (1415)
Q Consensus 1039 ~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~ 1118 (1415)
.-....||++.|.++|.++|.|++++|.|.+|+|++||.|+++|... ....+|+++.+++..+.
T Consensus 206 --~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~~ 269 (396)
T PRK00049 206 --ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD--------------TQKTTVTGVEMFRKLLD 269 (396)
T ss_pred --CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC--------------CceEEEEEEEECCcEeC
Confidence 11235679999999999999999999999999999999998876421 12345667777766555
Q ss_pred ccc---ceeeeccccccccCCCceEEeCC
Q 000570 1119 AAQ---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1119 aa~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+. .+.+.++|++....-.+.+++.+
T Consensus 270 ~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 270 EGQAGDNVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred EEcCCCEEEEEeCCCCHHHCCcceEEecC
Confidence 442 25555566654444445555443
No 23
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=2.5e-28 Score=296.37 Aligned_cols=258 Identities=25% Similarity=0.368 Sum_probs=184.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++.... ....+|+|.+++...+.+.
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~---- 82 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD---- 82 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC----
Confidence 44999999999999999999843211 0114667776665555433
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccC--CCChhHHHHHHHHHhcCC-ceEEEEEecc
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKVD 951 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~~v-P~IVaINKiD 951 (1415)
...|+|||||||..|...+.++++.+|++|||||+.+ |+.+||.+++.++..+++ |+|||+||+|
T Consensus 83 ------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 83 ------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred ------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 3469999999999999888889999999999999999 999999999999998887 6999999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
++. |. . ..|......+...+...|+.. ..+++||+||++|.||.++...+.
T Consensus 151 l~~-~~----~--------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~~ 201 (425)
T PRK12317 151 AVN-YD----E--------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENMP 201 (425)
T ss_pred ccc-cc----H--------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCCC
Confidence 962 21 0 111222233444444445431 246899999999999988665443
Q ss_pred HHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCc
Q 000570 1032 QWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMK 1103 (1415)
Q Consensus 1032 ~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~ 1103 (1415)
|+..+.+.+.|. ...||++.|.+++.+.|.|++++|.|.+|+|++||.|++++++ .
T Consensus 202 wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~-------------- 265 (425)
T PRK12317 202 WYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--V-------------- 265 (425)
T ss_pred cccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--C--------------
Confidence 333333433332 2457899999999999999999999999999999999987643 1
Q ss_pred cceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1104 ELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1104 e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|++++.|+..+..| ..|.|.+.+++......+.+++.+
T Consensus 266 ~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 266 VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 23566666666655543 336666666654434445555444
No 24
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=8.2e-28 Score=288.99 Aligned_cols=259 Identities=23% Similarity=0.339 Sum_probs=176.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..+|+|+||+|||||||+++|++... .....+|+|.++....+++. ..
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~~ 75 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------NR 75 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------CE
Confidence 34599999999999999999974311 11234788877655444322 23
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
.++|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++..+++|.| ||+||||++. ...+
T Consensus 76 ~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 146 (394)
T TIGR00485 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (394)
T ss_pred EEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC------HHHH---
Confidence 58999999999999999999999999999999999999999999999999999876 6899999962 0110
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHHHHHHH----Hhh
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTMV----EKL 1042 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~~~~l~----e~l 1042 (1415)
+......+...|...++. +..+|+||+||++|. |...+...+..++..... ...
T Consensus 147 -----------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~ 205 (394)
T TIGR00485 147 -----------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER 205 (394)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC
Confidence 111112344445444432 234799999999985 554444322222221110 011
Q ss_pred hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc-
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ- 1121 (1415)
Q Consensus 1043 ~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~- 1121 (1415)
....+|++.|.++|.++|.|++++|+|.+|+|++||.|++++.. .....+|+++++++..+..+.
T Consensus 206 ~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~--------------~~~~~~VksI~~~~~~~~~a~a 271 (394)
T TIGR00485 206 ETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK--------------DTRKTTVTGVEMFRKELDEGRA 271 (394)
T ss_pred CCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC--------------CCcEEEEEEEEECCeEEEEECC
Confidence 23457999999999999999999999999999999999886531 112345666666665554332
Q ss_pred --ceeeeccccccccCCCceEEeC
Q 000570 1122 --GIKITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1122 --gv~i~~~gL~~~~aG~~~~v~~ 1143 (1415)
.+.|.+.|++......+.+++.
T Consensus 272 Gd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 272 GDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred CCEEEEEeCCccHHHCCccEEEec
Confidence 2555555554433334444443
No 25
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.96 E-value=2.3e-28 Score=304.75 Aligned_cols=224 Identities=27% Similarity=0.305 Sum_probs=170.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeceeEecccccceeeeecccccccC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
+|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.|.
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~---------------- 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN---------------- 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------
Confidence 577 9999999999999999998632 111 123566666655555443
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999852 22221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~ 1036 (1415)
. +..+...|...+...+ .-.+|++++||++|. ||..||+.|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2233333433332211 124799999999996 788888888876653
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCc-ceeehhhhc
Q 000570 1037 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALL 1097 (1415)
Q Consensus 1037 ~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~-i~~~Ir~ll 1097 (1415)
+. .....+|++.|..+++.++.|+++.++|++|+|+.||.|++++..+. ...+|..|+
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~ 251 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLL 251 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEE
Confidence 31 13456899999999999999999999999999999999998876442 224455554
No 26
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-28 Score=273.69 Aligned_cols=257 Identities=28% Similarity=0.396 Sum_probs=193.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----------------cccccccCceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+-+||||||||||..+|+.. +.....++|||+... .+.+++- .+++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeTa--------------~RhY 119 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYETA--------------KRHY 119 (449)
T ss_pred cccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeecc--------------cccc
Confidence 4899999999999999999731 123345788886643 3333321 2468
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHH
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
-.+|+|||.+|..++..|..+.|++||||.+.+|.+|||+|||.+++..++ .+||+|||.|++. .+...+.+
T Consensus 120 aH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~leLV- 192 (449)
T KOG0460|consen 120 AHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLELV- 192 (449)
T ss_pred ccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHHHH-
Confidence 899999999999999999999999999999999999999999999999998 4788999999984 23322222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC---C----CC---hhhHHHHHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---G----EG---IPDLLLLLVQWTQKTMV 1039 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t---G----eG---I~dLl~~L~~l~~~~l~ 1039 (1415)
-.+++..|.++||+ |.++|||..||+. | .| |..||+.+-.+++.+
T Consensus 193 -------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P-- 247 (449)
T KOG0460|consen 193 -------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP-- 247 (449)
T ss_pred -------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc--
Confidence 13567788888987 5678999999875 3 22 233333333322211
Q ss_pred HhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc
Q 000570 1040 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1119 (1415)
Q Consensus 1040 e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a 1119 (1415)
......||.+.|..+|.+.|+|||++++|.+|+|+.|+.+-+.|.+..+.+. |.++.++++.+..
T Consensus 248 -~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lktt--------------vtgiemF~K~ld~ 312 (449)
T KOG0460|consen 248 -ERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTT--------------VTGIEMFRKSLDE 312 (449)
T ss_pred -ccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeE--------------eehHHHHHHHHHh
Confidence 1234667999999999999999999999999999999999888866433332 4566777777776
Q ss_pred cc---ceeeeccccccccCCCceEEeCCCc
Q 000570 1120 AQ---GIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1120 a~---gv~i~~~gL~~~~aG~~~~v~~~e~ 1146 (1415)
|+ .+.+.++|+......++|+++.|..
T Consensus 313 a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 313 AQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred cccccceehhhhcCCHHHHhcccEEecCCc
Confidence 65 2677778888777778888887764
No 27
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-28 Score=266.58 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=186.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----------------cccccccCceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+.+||+|||||||.-+|+.. +.....++|||+......+.+. .+++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rhy 77 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRHY 77 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------CceE
Confidence 3899999999999999999731 1223346788776654444333 3569
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHHH
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
.++|+|||.+|..++..|+.+.|++||||+|.+|.+|||++|+.+.+..++| +||++||+|++. +.+....+
T Consensus 78 ahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellelV- 150 (394)
T COG0050 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLELV- 150 (394)
T ss_pred EeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999996 567999999984 22222211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC-CCChhhHHHHHHHHHHHHHHHh-----hh
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS-GEGIPDLLLLLVQWTQKTMVEK-----LT 1043 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t-GeGI~dLl~~L~~l~~~~l~e~-----l~ 1043 (1415)
-.+++..|..+||. |..+||+..||+. .+|-......|..++.. +... ..
T Consensus 151 -------------emEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~a-vd~yip~Per~ 206 (394)
T COG0050 151 -------------EMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDA-VDSYIPTPERD 206 (394)
T ss_pred -------------HHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHH-HHhcCCCCCCc
Confidence 23577788888875 4578999999975 34443333333332211 1111 12
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc---c
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---A 1120 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a---a 1120 (1415)
...||.+.|.+++.+.|+||+++++|.+|+|++|+.+.+.|..... ...+.++.+..+.... +
T Consensus 207 ~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~--------------kttvtgvemfrk~ld~~~AG 272 (394)
T COG0050 207 IDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQ--------------KTTVTGVEMFRKLLDEGQAG 272 (394)
T ss_pred ccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccc--------------eeEEEhHHHHHHHHhccccC
Confidence 3567999999999999999999999999999999999888754211 1223444444444433 3
Q ss_pred cceeeeccccccccCCCceEEeCCC
Q 000570 1121 QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
.++.+.++|..+-..-++++++.|.
T Consensus 273 dnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 273 DNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred CCcceEEEeccccceecceEeecCC
Confidence 4577777777766666667666664
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-27 Score=276.34 Aligned_cols=248 Identities=29% Similarity=0.427 Sum_probs=197.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+|+.+||+|||||||+..|.+... .....+|||.++|.++++.... .+.|||+|||++|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHHH
Confidence 689999999999999999987643 3344689999999999887642 489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..|+...|+|||||++++|+++||.|||..|..++++- |||+||+|++.. + +..+.
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHHH
Confidence 9999999999999999999999999999999999999876 999999999731 0 11222
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcc
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~G 1062 (1415)
+..|+..+. | ...++|++|+.+|+||.+|.+.|..+.. ........+|+..|..+|.+.|.|
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEecccc
Confidence 333333332 1 3468999999999999999999988764 123356788999999999999999
Q ss_pred eEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc---cccceeeeccccccccCCCce
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~---aa~gv~i~~~gL~~~~aG~~~ 1139 (1415)
||++|.+.+|++++||.+++.|.+ ++++|++++.|...+. |++.|.++++|.+.-..-+++
T Consensus 187 TVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~ 250 (447)
T COG3276 187 TVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGD 250 (447)
T ss_pred EEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhccc
Confidence 999999999999999999987654 4567788877766544 444466666666444445566
Q ss_pred EEeCCC
Q 000570 1140 YVVGPD 1145 (1415)
Q Consensus 1140 ~v~~~e 1145 (1415)
++++++
T Consensus 251 ~L~~~~ 256 (447)
T COG3276 251 WLLKPE 256 (447)
T ss_pred EeccCC
Confidence 655544
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-27 Score=275.16 Aligned_cols=259 Identities=25% Similarity=0.287 Sum_probs=192.0
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccc----------------cccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE----------------GEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~----------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
..+|| |+|+.|||||||||++.|+.++-.- ...+|||+=.-.+.+ .
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav----------------~ 64 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV----------------N 64 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee----------------e
Confidence 46888 9999999999999999998643211 113455543333333 3
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
|+...|+|+|||||.+|...+.|.++..|.+||||||.+|.+|||+..+.-+...+++.||||||||++. +..
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-------Arp 137 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD-------ARP 137 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-------CCH
Confidence 5556799999999999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~ 1034 (1415)
...+..+.+.|.+.|-+.+ .-.+|+|..||+.|. ++..|++.|+.+.
T Consensus 138 ---------------~~Vvd~vfDLf~~L~A~de--------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 ---------------DEVVDEVFDLFVELGATDE--------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---------------HHHHHHHHHHHHHhCCChh--------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 2335566777777765533 235899999999884 4556666666655
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcc-eeehhhhcCCCCCccceeeeeeee
Q 000570 1035 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1113 (1415)
Q Consensus 1035 ~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i-~~~Ir~ll~p~p~~e~rvk~~~~~ 1113 (1415)
+.+. .+...||++.|....|...+|....++|.+|++++|+.+.+....|.+ ..+|..||....++...+.
T Consensus 195 p~P~---~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~----- 266 (603)
T COG1217 195 PAPK---GDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIE----- 266 (603)
T ss_pred CCCC---CCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecc-----
Confidence 5432 345678999998888999999999999999999999999888765543 2345555544333322111
Q ss_pred hhhhccccceeeeccccccccCCCce
Q 000570 1114 HKQIKAAQGIKITAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1114 ~keV~aa~gv~i~~~gL~~~~aG~~~ 1139 (1415)
.+..|..|++.||+....|+.+
T Consensus 267 ----eA~AGDIVaiaG~~~~~igdTi 288 (603)
T COG1217 267 ----EAEAGDIVAIAGLEDINIGDTI 288 (603)
T ss_pred ----cccccCEEEEcCcccccccccc
Confidence 1335667777788777666544
No 30
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.95 E-value=2.6e-27 Score=287.50 Aligned_cols=258 Identities=27% Similarity=0.394 Sum_probs=181.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t--~v~-----------------------------~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 34999999999999999999852 111 0123567777666655443
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC---CChhHHHHHHHHHhcCC-ceEEEEEec
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 950 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G---v~~QT~E~l~llk~~~v-P~IVaINKi 950 (1415)
...|+|||||||..|...+.+++..+|++|||||+.+| +.+||.+++.+++..++ |+|||+||+
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 24599999999999999999999999999999999999 88999999988887775 689999999
Q ss_pred ccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 951 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 951 D~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
|++. |.. ..+......+...+...|+.. ..+++||+||++|.||.++...+
T Consensus 152 Dl~~-~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSVN-YDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hccC-ccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 9962 311 111222233444454455431 34799999999999998755433
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCC
Q 000570 1031 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1102 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~ 1102 (1415)
.++....|.+.|. ...||++.|.+++.+.|.|++++|+|.+|+|++||.|++++.+ .
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~------------- 267 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--V------------- 267 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--c-------------
Confidence 2222222333222 2357999999999999999999999999999999999986543 1
Q ss_pred ccceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1103 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1103 ~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
...|+++++++..+..| ..+.|.+.+++......+++++.+
T Consensus 268 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 268 -SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred -EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 23566666666655543 336666666655444455555543
No 31
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.9e-27 Score=274.09 Aligned_cols=215 Identities=29% Similarity=0.370 Sum_probs=173.7
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeceeEecccccceeeeeccccc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
...++|| ++|+.|.|||||||.++|+... ....+.+|||+...+..+.+....
T Consensus 5 ~~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~---------- 72 (603)
T COG0481 5 PQKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD---------- 72 (603)
T ss_pred chhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC----------
Confidence 3467899 9999999999999999998421 123346899988776666554211
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
-....|+|||||||.+|+-.++|.+..|.++||||||..|++.||+...-++...++-+|.||||||++ +++
T Consensus 73 -g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Ad 144 (603)
T COG0481 73 -GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AAD 144 (603)
T ss_pred -CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCC
Confidence 122459999999999999999999999999999999999999999999999999999999999999995 455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
...... + +..+ .|+.. -..+.+||+||.||+++|+.|+..++++ .-.
T Consensus 145 pervk~--------e----Ie~~------iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P---~g~ 191 (603)
T COG0481 145 PERVKQ--------E----IEDI------IGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPP---KGD 191 (603)
T ss_pred HHHHHH--------H----HHHH------hCCCc------------chheeEecccCCCHHHHHHHHHhhCCCC---CCC
Confidence 422211 1 1111 24432 2578999999999999999999877654 245
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.+.|+++.|++++++.-+|.++.++|.+|+|+.||.|.+++++
T Consensus 192 ~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg 234 (603)
T COG0481 192 PDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTG 234 (603)
T ss_pred CCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecC
Confidence 6788999999999999999999999999999999999988775
No 32
>PRK10218 GTP-binding protein; Provisional
Probab=99.95 E-value=4.8e-27 Score=292.53 Aligned_cols=215 Identities=25% Similarity=0.269 Sum_probs=164.2
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
.++|+ |+|+||+|||||||+++|++.. +.. ....|||.....+.+.+
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~--------------- 65 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW--------------- 65 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec---------------
Confidence 35787 9999999999999999999632 211 12345555555444443
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
....|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 66 -~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 66 -NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred -CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 33469999999999999999999999999999999999999999999999999999999999999985 2333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~ 1034 (1415)
...+ ..+...|...++.. ....+||+++||++|. ||..||+.|+.++
T Consensus 138 ~~vl---------------~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVV---------------DQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHH---------------HHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 3222 22333332222211 1234799999999998 4777777777665
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1035 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1035 ~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
+.+. .....||++.|..+++.++.|+++.++|++|+|+.||.|++++..
T Consensus 195 P~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~ 243 (607)
T PRK10218 195 PAPD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSE 243 (607)
T ss_pred CCCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCC
Confidence 4331 134567999999999999999999999999999999999887653
No 33
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=4.3e-26 Score=274.80 Aligned_cols=254 Identities=23% Similarity=0.313 Sum_probs=164.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc--c-------------cc------------------ccCceeEeeceeEecccccc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV--Q-------------EG------------------EAGGITQQIGATYFPAENIR 873 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v--~-------------~g------------------eagGITq~iga~~~~~~~i~ 873 (1415)
.|+|+||+|||||||+++|++..- . .+ ..+|||.+++..++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~---- 77 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST---- 77 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc----
Confidence 489999999999999999974321 0 01 1244555554444433
Q ss_pred eeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccc
Q 000570 874 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 952 (1415)
Q Consensus 874 ~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~ 952 (1415)
....++|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++| +|||+||||+
T Consensus 78 ------------~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 ------------DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred ------------CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 334699999999999999999999999999999999999999999999999998875 8889999999
Q ss_pred ccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 953 ~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+. |. .. . |......+...+...++ ..+++||+||++|.||..+...+.|
T Consensus 146 ~~-~~----~~---~-----------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YD----EE---V-----------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-ch----HH---H-----------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 62 21 00 0 11111122222333332 2468999999999999864322211
Q ss_pred HHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCcc
Q 000570 1033 WTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKE 1104 (1415)
Q Consensus 1033 l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e 1104 (1415)
+-.+.|.+.| ....+|++.|..++.....+.-+.|.|.+|+|++||.|++++.+ . .
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~ 258 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--R--------------S 258 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--c--------------E
Confidence 1111122211 12456888888876543323336799999999999999987642 2 2
Q ss_pred ceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCCC
Q 000570 1105 LRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1105 ~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
.+|+++++++..+..+ ..+.+.+.+. .....+.+++.+.
T Consensus 259 ~~VksI~~~~~~~~~a~~G~~v~l~l~~~--~~i~rG~vl~~~~ 300 (406)
T TIGR02034 259 SRVARIVTFDGDLEQARAGQAVTLTLDDE--IDISRGDLLAAAD 300 (406)
T ss_pred EEEEEEEECCcccCEeCCCCEEEEEECCc--cccCCccEEEcCC
Confidence 4556666666555443 2344554432 2223444555443
No 34
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=5.9e-26 Score=273.74 Aligned_cols=225 Identities=24% Similarity=0.291 Sum_probs=162.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc---ccccCceeEeeceeEecccccce------eee-ec-cc--ccccCCCCEE
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRE------RTR-EL-KA--NATLKVPGLL 891 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~~~i~~------~t~-~v-~~--~~~~~~~~l~ 891 (1415)
..+|+|+||+|||||||+++|.+.... ....+|+|..++..++.+..... .+. .+ .. ........++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 345999999999999999999764321 23357899998876654321000 000 00 00 0001235699
Q ss_pred EEeCCCCcchhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHH
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
|||||||+.|...+.++++.+|++|||||+.+|+ ++||.+++.++..+++ |+|||+||+|++.. ..
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-------~~----- 151 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-------EK----- 151 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-------HH-----
Confidence 9999999999999999999999999999999998 9999999999988886 69999999999620 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1049 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~ 1049 (1415)
. ...+..+...+... +...+++||+||++|.||..|+++|..+++.. ......+++
T Consensus 152 -----~----~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 152 -----A----LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred -----H----HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 0 01112222222211 11347999999999999999999988654321 122356799
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEecc
Q 000570 1050 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1085 (1415)
Q Consensus 1050 ~~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~ 1085 (1415)
+.|.+++.+.| +|+++.|.|.+|+|++||.|.+++.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccC
Confidence 99999998776 5679999999999999999998764
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.94 E-value=6.6e-26 Score=283.75 Aligned_cols=213 Identities=28% Similarity=0.347 Sum_probs=163.1
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCc--cc-------------ccccCceeEeeceeEecccccceeeeeccccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQ-------------EGEAGGITQQIGATYFPAENIRERTRELKANATL 885 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~--v~-------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~ 885 (1415)
.++|| |+|+||+|||||||+++|++.. +. ....+|||.....+.+.|... ..
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-----------dg 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-----------DG 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-----------CC
Confidence 46888 9999999999999999998632 11 112456666655554444210 01
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
....|+|||||||.+|...+.++++.||++|||||+.+|++.||..+|.++...++|+|+|+||+|+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123599999999999999999999999999999999999999999999998888999999999999852 1111
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1045 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~ 1045 (1415)
..+ ..+... .++. ...+|++||++|.||.+|+.+|...++.+. -...
T Consensus 145 ~v~---------------~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~---~~~~ 191 (600)
T PRK05433 145 RVK---------------QEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK---GDPD 191 (600)
T ss_pred HHH---------------HHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCcccc---CCCC
Confidence 110 111111 1221 125899999999999999999987765432 2345
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++++.|++++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 67999999999999999999999999999999999887754
No 36
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=1.7e-25 Score=273.71 Aligned_cols=255 Identities=23% Similarity=0.295 Sum_probs=165.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc--c-------------cc------------------ccCceeEeeceeEeccccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV--Q-------------EG------------------EAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v--~-------------~g------------------eagGITq~iga~~~~~~~i 872 (1415)
+.|+|+||+|+|||||+++|++..- . .| ..+|||.+++..++.+
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~--- 104 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST--- 104 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc---
Confidence 4599999999999999999985421 1 01 1244555554444433
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecc
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 951 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD 951 (1415)
....++|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||
T Consensus 105 -------------~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 -------------EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred -------------CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 33569999999999999999999999999999999999999999999999998886 6889999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
++. |.. . .+......+...+...++ ...+++||+||++|.||..+...+-
T Consensus 172 ~~~-~~~----~--------------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~ 221 (474)
T PRK05124 172 LVD-YSE----E--------------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMP 221 (474)
T ss_pred ccc-chh----H--------------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCccccccccc
Confidence 962 211 0 011111122222222221 1247999999999999987643322
Q ss_pred HHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCc
Q 000570 1032 QWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMK 1103 (1415)
Q Consensus 1032 ~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~ 1103 (1415)
++....|.+.| ....++++.|..++........+.|+|.+|+|++||.|++++++ .
T Consensus 222 wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~-------------- 285 (474)
T PRK05124 222 WYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG--K-------------- 285 (474)
T ss_pred ccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC--c--------------
Confidence 21111222211 12356889888876432222225689999999999999987643 1
Q ss_pred cceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1104 ELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1104 e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|+++++|+..+..+ +.+.|.+.+. .....+.+++.+
T Consensus 286 ~~~VksI~~~~~~v~~A~aG~~V~l~L~~~--~~i~rG~VL~~~ 327 (474)
T PRK05124 286 ESNVARIVTFDGDLEEAFAGEAITLVLEDE--IDISRGDLLVAA 327 (474)
T ss_pred eEEEEEEEEcCccccCcCCCCEEEEEeCCc--cccCCccEEECC
Confidence 24566666666655433 3355554432 223344455444
No 37
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.93 E-value=1.2e-25 Score=281.21 Aligned_cols=212 Identities=26% Similarity=0.325 Sum_probs=160.8
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccc---------------ccccCceeEeeceeEecccccceeeeecccccccC
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---------------EGEAGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~---------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
++|| |+|+||+|||||||+++|++.... ....+|||.......+.|... ...
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~-----------~g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAK-----------DGE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcC-----------CCC
Confidence 4787 999999999999999999864211 012346666655444443210 001
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...|+|||||||.+|..++.+++..||++|||||+.+|++.||..+|..+...++|+|+|+||+|+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999888888999999999999852 11110
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1046 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~ 1046 (1415)
.+ ..+... .++. ...++++||++|.||.+|+.+|...++.+. -....
T Consensus 142 ~~---------------~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~---~~~~~ 188 (595)
T TIGR01393 142 VK---------------KEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPK---GDPDA 188 (595)
T ss_pred HH---------------HHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCC---CCCCC
Confidence 00 111111 1221 125899999999999999999987664331 13456
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
|+++.|+.++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 7999999999999999999999999999999999887653
No 38
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.4e-26 Score=254.35 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=168.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeEeeceeEecccccce
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v---------------------------------~~geagGITq~iga~~~~~~~i~~ 874 (1415)
++.+|+||.|||||+.+|++..- +..+..|||+++...+|.+..
T Consensus 9 fiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K--- 85 (431)
T COG2895 9 FITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK--- 85 (431)
T ss_pred EEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc---
Confidence 79999999999999999985321 112246899999888877653
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccc
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRL 953 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~ 953 (1415)
+.+.|.|||||+.|+.+|..|++-||++||+||+.+|+..||+.|.-++..+++ .+||++||||++
T Consensus 86 -------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLv 152 (431)
T COG2895 86 -------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLV 152 (431)
T ss_pred -------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeeccc
Confidence 459999999999999999999999999999999999999999999999999997 688999999998
Q ss_pred cCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 954 YGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 954 ~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+|++ ..|..............|+. .+.+||+||+.|+||..--..+-|+
T Consensus 153 -dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mpWY 201 (431)
T COG2895 153 -DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMPWY 201 (431)
T ss_pred -ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCCcc
Confidence 3432 23333334444445555543 3589999999999997665555555
Q ss_pred HHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCC
Q 000570 1034 TQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1099 (1415)
Q Consensus 1034 ~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p 1099 (1415)
..+.+++.|.. ..+|+++|..|..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 202 ~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 202 KGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred cCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 55666655432 345888888775322212335678999999999999998865 45566666554
No 39
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.7e-25 Score=278.22 Aligned_cols=283 Identities=25% Similarity=0.293 Sum_probs=195.1
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc--------cccc----------ccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQEG----------EAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~--------v~~g----------eagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|| |+|+||+|||||||+++|+... +..| ..+|||.+..++++.|..
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---------- 74 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---------- 74 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC----------
Confidence 467888 9999999999999999998432 1111 246777777777666552
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
...|+|||||||.+|+..+.|+++.+|+||+|||+..|+++||...|+++..+++|.|+|+||||++.
T Consensus 75 -----~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~------- 142 (697)
T COG0480 75 -----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG------- 142 (697)
T ss_pred -----ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc-------
Confidence 14599999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhHHHHHHhhhHHHH-----------------------------------------------------HHHHHHHHHHHH
Q 000570 962 APIVKAIKQQNTDVQ-----------------------------------------------------NEFNMRLVQIVT 988 (1415)
Q Consensus 962 a~~~~~l~~q~~~v~-----------------------------------------------------~ef~~~l~~I~~ 988 (1415)
++|...+......+. ..|-..+.....
T Consensus 143 a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de 222 (697)
T COG0480 143 ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDE 222 (697)
T ss_pred cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCH
Confidence 444444433221111 111111111111
Q ss_pred HHHHcCCchhhhhcccC---------------CCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh------------
Q 000570 989 QLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK------------ 1041 (1415)
Q Consensus 989 ~L~e~gl~~e~~~~~~~---------------~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~------------ 1041 (1415)
.|.+ .|..+.. -+..+|+++.||..+-|+..||+.++.+++.++...
T Consensus 223 ~l~e------~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~ 296 (697)
T COG0480 223 ELME------KYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEK 296 (697)
T ss_pred HHHH------HHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccc
Confidence 1111 1111111 134789999999999999999999999987653321
Q ss_pred -----hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhh
Q 000570 1042 -----LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116 (1415)
Q Consensus 1042 -----l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~ke 1116 (1415)
.....++.+.|+.+...+..|....++|++|+|+.|+.|+..+.. ...+|-.|+.++... .....+
T Consensus 297 ~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~-------~~~v~~ 367 (697)
T COG0480 297 AVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNE-------REEVDE 367 (697)
T ss_pred hhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCc-------eeeccc
Confidence 112456888999988888889988899999999999987765432 122333333222111 112222
Q ss_pred hccccceeeeccccccccCCCceEEeC
Q 000570 1117 IKAAQGIKITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1117 V~aa~gv~i~~~gL~~~~aG~~~~v~~ 1143 (1415)
+. .|-.+++.||..+..|+.+....
T Consensus 368 ~~--AG~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 368 VP--AGDIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred cc--CccEEEEEcccccccCCeeecCC
Confidence 22 34566677888877777766444
No 40
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=3.3e-25 Score=267.27 Aligned_cols=255 Identities=23% Similarity=0.256 Sum_probs=172.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccc-------eeeee-ccc-cc-ccCCCCEEE
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR-------ERTRE-LKA-NA-TLKVPGLLV 892 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~-------~~t~~-v~~-~~-~~~~~~l~i 892 (1415)
.+|+|+||+|||||||+++|.+... .....+|+|.+++...+.+.... -.+.. +.. .. ......|+|
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 4599999999999999999976422 12335889999887655542100 00000 000 00 001246999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
||||||..|...+.+++..+|++|||||+.+|+ .++|.+++.++...++ |+|||+||+|++.. ...
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~------~~~------ 157 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK------ERA------ 157 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc------hhH------
Confidence 999999999999999999999999999999998 8999999999988886 69999999999621 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccce
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1050 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~ 1050 (1415)
...+..+...+... +...+++|++||++|.||+.|+..|..+++.. ......++++
T Consensus 158 ---------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~---~~~~~~~~r~ 213 (411)
T PRK04000 158 ---------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTP---ERDLDKPPRM 213 (411)
T ss_pred ---------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC---CCCCCCCceE
Confidence 00111222222111 11347999999999999999999887654321 1123567899
Q ss_pred EEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1051 TVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1051 ~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
.|.++|.+.| .|+++.|+|.+|+|++||.|.+++........+..+ .|. ..+|+++.+++..+..+
T Consensus 214 ~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~---~~~-~~~VksI~~~~~~~~~a 287 (411)
T PRK04000 214 YVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKW---EPI-TTKIVSLRAGGEKVEEA 287 (411)
T ss_pred EEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccc---ccc-eEEEeEEEECCEECCEE
Confidence 9999998876 456999999999999999999876431000000000 011 24677777777665544
No 41
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.6e-25 Score=261.64 Aligned_cols=226 Identities=26% Similarity=0.442 Sum_probs=173.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCceeEeeceeEeccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-------------------------------v~~geagGITq~iga~~~~~~~i 872 (1415)
-...++|+||||+|||||+++|++.- ....+.+|||.+++.+.|....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~- 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS- 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc-
Confidence 33458999999999999999998410 1122357888888877776332
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceE
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 944 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 944 (1415)
..++|||+|||.+|+..+..|++.+|++|||||++.| ...||++|..+|+.+|+ .+|
T Consensus 255 ---------------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 255 ---------------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred ---------------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 3599999999999999999999999999999999875 35799999999999997 899
Q ss_pred EEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCCh
Q 000570 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023 (1415)
Q Consensus 945 VaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 1023 (1415)
|+|||||++ +|.+. +|.+....+...| ...||.. ..+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~e----------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFKE----------SSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCccc----------CCcceEecccccCCcc
Confidence 999999998 68653 4444455555666 5566652 4678999999999998
Q ss_pred hhH--HHHHHHHHH-HHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceee
Q 000570 1024 PDL--LLLLVQWTQ-KTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1092 (1415)
Q Consensus 1024 ~dL--l~~L~~l~~-~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~ 1092 (1415)
-.. -..+.+|+. ++|+..+. +..||+++|++++...+.|.+++|.|.+|.|..|+.|+++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 644 123444443 44444442 3457999999999999999999999999999999999987643 2334
Q ss_pred hhhh
Q 000570 1093 IRAL 1096 (1415)
Q Consensus 1093 Ir~l 1096 (1415)
|+.|
T Consensus 449 vk~l 452 (603)
T KOG0458|consen 449 VKGL 452 (603)
T ss_pred EEee
Confidence 4444
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=1.1e-25 Score=243.81 Aligned_cols=164 Identities=39% Similarity=0.552 Sum_probs=125.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~------------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+|+|+||+|||||||+++|++..... ...+|+|..++...+.. .+...
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~~ 70 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENNR 70 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESSE
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------ccccc
Confidence 49999999999999999998543221 12356666666555540 12335
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.++|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++..+++|+|||+||||++.
T Consensus 71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-------------- 136 (188)
T PF00009_consen 71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-------------- 136 (188)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH--------------
T ss_pred ceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh--------------
Confidence 699999999999999999999999999999999999999999999999999999999999999961
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+...+..+...| ...++.. ...+|+||+||++|.||..|++.|..+++
T Consensus 137 --------~~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 --------KELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred --------hhHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 12222333344233 3333221 03689999999999999999999987764
No 43
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.93 E-value=5e-25 Score=248.18 Aligned_cols=281 Identities=22% Similarity=0.322 Sum_probs=194.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccceeeeeccccc--------
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANA-------- 883 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~~t~~v~~~~-------- 883 (1415)
.+|+++||||||||||+.+|......+|. .+|.|.++....+-+..-+- ..+....
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~--~rlknPld~aE~~~v 195 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKV--VRLKNPLDEAEKAAV 195 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCce--EeecCcccHHHHhHh
Confidence 45899999999999999999865554443 24555554433332222110 0111100
Q ss_pred -ccCCCCEEEEeCCCCcchhhHHhhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 884 -TLKVPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 884 -~~~~~~l~iIDTPGHe~F~~lr~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
.-...-+.|+||-||+.|...+.||+ ...|+.+|||.|++|++-.|.|||.++....+|+|||+||+|+.+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~------ 269 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP------ 269 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc------
Confidence 11123589999999999998888886 458999999999999999999999999999999999999999973
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc---------ccCC-CcceeEEeCCCCCCCChhhHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK---------NKDR-GETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~---------~~~~-g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
...|...+. .|...|...+-.+-..-+ .... ...+|||.+|+.||+|++- |..+
T Consensus 270 ddr~~~v~~---------------ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~ 333 (527)
T COG5258 270 DDRFQGVVE---------------EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEF 333 (527)
T ss_pred HHHHHHHHH---------------HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHH
Confidence 333333222 222222221110000000 0012 2479999999999999954 4444
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
+.+++..- ......+|.+.|.++|.+.|.|+++.+.|.+|+|+.||++.+++.. .+.+++..|+++
T Consensus 334 f~~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSI 399 (527)
T COG5258 334 FLLLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSI 399 (527)
T ss_pred HHhCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEE
Confidence 44454332 3456778999999999999999999999999999999999986533 345678889999
Q ss_pred eeehhhhccccc---eeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa~g---v~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+||-.|.+|.. +.|++.|.+.-....+|+++..
T Consensus 400 emh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 999988877653 5667777766555566666553
No 44
>PRK00007 elongation factor G; Reviewed
Probab=99.92 E-value=4.5e-24 Score=272.72 Aligned_cols=240 Identities=23% Similarity=0.244 Sum_probs=168.2
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcc---ccc---------------ccCceeEeeceeEecccccceeeeecc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEG---------------EAGGITQQIGATYFPAENIRERTRELK 880 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v---~~g---------------eagGITq~iga~~~~~~~i~~~t~~v~ 880 (1415)
+..++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+...+.+.|
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~----------- 72 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----------- 72 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----------
Confidence 4567888 99999999999999999984211 000 2355666655555443
Q ss_pred cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 881 ~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
....|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 73 -----~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 73 -----KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred -----CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 335699999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ChhHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDV-------------------------------------------------QNEFNMRLVQIVTQLK 991 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v-------------------------------------------------~~ef~~~l~~I~~~L~ 991 (1415)
+++...+......+ ..........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 22322222211100 0000011111111111
Q ss_pred HcCC-chhhhhcc---------------cCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh--------------
Q 000570 992 EQGM-NTELYYKN---------------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-------------- 1041 (1415)
Q Consensus 992 e~gl-~~e~~~~~---------------~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~-------------- 1041 (1415)
+..= -.+.|..+ ...+..+|++..||+++.||..||+.|+.+++.+....
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 1100 00011111 01246789999999999999999999999887654210
Q ss_pred ---hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1042 ---LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1042 ---l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
..+..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~ 345 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNS 345 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeC
Confidence 123456888999998888899999999999999999988643
No 45
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=271.94 Aligned_cols=270 Identities=20% Similarity=0.244 Sum_probs=164.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccc-----------ccCceeEeeceeEeccccc---ceeeeeccc---ccccCCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQQIGATYFPAENI---RERTRELKA---NATLKVPG 889 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~g-----------eagGITq~iga~~~~~~~i---~~~t~~v~~---~~~~~~~~ 889 (1415)
.|+|+||+|||||||+++|++..-... ...|.|.+.-.+.+..+.. +.+..++.. .+.+....
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~ 105 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRK 105 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCce
Confidence 389999999999999999986421100 0122221111111111111 111111111 12234457
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~----- 175 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E----- 175 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H-----
Confidence 9999999999999888899999999999999999999999999999998886 6888999999962 211 0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhh------
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------ 1042 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l------ 1042 (1415)
.+......+...+...++ ..+++||+||++|.||.++...+-++..+.|.+.|
T Consensus 176 ---------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~~ 234 (632)
T PRK05506 176 ---------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEIA 234 (632)
T ss_pred ---------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCCC
Confidence 111112222233333343 24689999999999998543221111111222211
Q ss_pred --hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1043 --TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1043 --~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
....+|++.|..++.....+..+.|.|.+|+|++||.|++++++ . ..+|+++++|+..+..+
T Consensus 235 ~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~~~VksI~~~~~~~~~a 298 (632)
T PRK05506 235 SDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--K--------------TSRVKRIVTPDGDLDEA 298 (632)
T ss_pred CCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--c--------------eEEEEEEEECCceeCEE
Confidence 12456888888876532112226799999999999999987643 2 24556666666555433
Q ss_pred ---cceeeeccccccccCCCceEEeCCC
Q 000570 1121 ---QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1121 ---~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
..+.|.+.+. .....+++++.++
T Consensus 299 ~aG~~v~i~l~~~--~~i~rG~vL~~~~ 324 (632)
T PRK05506 299 FAGQAVTLTLADE--IDISRGDMLARAD 324 (632)
T ss_pred cCCCeEEEEecCc--cccCCccEEecCC
Confidence 3355555432 2234455555554
No 46
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.91 E-value=1.3e-23 Score=268.78 Aligned_cols=241 Identities=23% Similarity=0.238 Sum_probs=169.3
Q ss_pred ccccccCCCceeEEeCCCCCHHHHHHHHHcCcc--------ccc----------ccCceeEeeceeEecccccceeeeec
Q 000570 818 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------QEG----------EAGGITQQIGATYFPAENIRERTREL 879 (1415)
Q Consensus 818 ~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v--------~~g----------eagGITq~iga~~~~~~~i~~~t~~v 879 (1415)
.+..++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+.....+.|.
T Consensus 5 ~~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------- 73 (689)
T TIGR00484 5 TDLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------- 73 (689)
T ss_pred CccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC---------
Confidence 34567898 99999999999999999974211 111 13566666555555443
Q ss_pred ccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccC
Q 000570 880 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTC 959 (1415)
Q Consensus 880 ~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~ 959 (1415)
...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 74 -------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~----- 141 (689)
T TIGR00484 74 -------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG----- 141 (689)
T ss_pred -------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC-----
Confidence 34699999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CChhHHHHHHhhhHHHH--------------------------------------------HHHH----HHHHHHHHH--
Q 000570 960 RNAPIVKAIKQQNTDVQ--------------------------------------------NEFN----MRLVQIVTQ-- 989 (1415)
Q Consensus 960 ~~a~~~~~l~~q~~~v~--------------------------------------------~ef~----~~l~~I~~~-- 989 (1415)
+++...+......+. .++. .....++..
T Consensus 142 --~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 219 (689)
T TIGR00484 142 --ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA 219 (689)
T ss_pred --CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 223222222111000 0011 111111111
Q ss_pred -----HHHc-----CCchhhhhc----ccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---------------
Q 000570 990 -----LKEQ-----GMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------- 1040 (1415)
Q Consensus 990 -----L~e~-----gl~~e~~~~----~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------- 1040 (1415)
|.+. .+..+.++. ....+..+|++..||++|.||..||+.|+.+++.+...
T Consensus 220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 299 (689)
T TIGR00484 220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIE 299 (689)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceee
Confidence 1111 011111110 01125678999999999999999999999988765321
Q ss_pred -hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1041 -KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1041 -~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
...+..++.+.|+.+...+..|.+..++|++|+|+.||.|...
T Consensus 300 ~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 343 (689)
T TIGR00484 300 RKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNS 343 (689)
T ss_pred ecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeC
Confidence 0122446888999999999999999999999999999998743
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.91 E-value=1.2e-23 Score=268.89 Aligned_cols=239 Identities=23% Similarity=0.259 Sum_probs=166.7
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc-c-------cc----------cccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-V-------QE----------GEAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~-v-------~~----------geagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|+ |+|+||+|||||||+++|++.. . .. ...+|||.++...++.|.
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------- 71 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 71 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-----------
Confidence 346777 9999999999999999997521 1 10 024566666665555443
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
...|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 72 -----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 72 -----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred -----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 34699999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHHH
Q 000570 962 APIVKAIKQQNTDV-------------------------------------------------QNEFNMRLVQIVTQLKE 992 (1415)
Q Consensus 962 a~~~~~l~~q~~~v-------------------------------------------------~~ef~~~l~~I~~~L~e 992 (1415)
+++...+......+ ..........++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 22222221111100 00000001111111111
Q ss_pred cCC-chhhhhccc---------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh---------------
Q 000570 993 QGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1041 (1415)
Q Consensus 993 ~gl-~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~--------------- 1041 (1415)
..= -.+.|..+. ..+..+|++..||.+|.||..||+.|+.+++.+....
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 000 000011110 1145689999999999999999999999887654210
Q ss_pred -hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1042 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1042 -l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
..+..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 342 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNT 342 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeC
Confidence 123456888999998888899999999999999999988644
No 48
>PRK13351 elongation factor G; Reviewed
Probab=99.91 E-value=1.7e-23 Score=268.09 Aligned_cols=243 Identities=25% Similarity=0.288 Sum_probs=169.8
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcccc---c---------------ccCceeEeeceeEecccccceeeeecc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE---G---------------EAGGITQQIGATYFPAENIRERTRELK 880 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~---g---------------eagGITq~iga~~~~~~~i~~~t~~v~ 880 (1415)
+..++|+ |+|+||+|||||||+++|+...-.. + ..+|+|.......+.
T Consensus 4 ~~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~------------ 69 (687)
T PRK13351 4 PLMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD------------ 69 (687)
T ss_pred ccccccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE------------
Confidence 3456777 9999999999999999998532110 0 013333333333332
Q ss_pred cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 881 ~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
|....|+|||||||.+|..++.++++.+|++|||||+..|++.+|..+|.++...++|+|||+||+|+.
T Consensus 70 ----~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~------- 138 (687)
T PRK13351 70 ----WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV------- 138 (687)
T ss_pred ----ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------
Confidence 334569999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ChhHHHHHHhhhHHHH---------------------------------------------HHHH----HHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQ---------------------------------------------NEFN----MRLVQIVTQLK 991 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~---------------------------------------------~ef~----~~l~~I~~~L~ 991 (1415)
++++...+......+. ..+. .....++..+.
T Consensus 139 ~~~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 139 GADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444443211100 0111 11111112111
Q ss_pred HcCC-chhhhhccc---------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---------------
Q 000570 992 EQGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------- 1040 (1415)
Q Consensus 992 e~gl-~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------- 1040 (1415)
+..- -.+.|+.+. ..+..+|++++||++|.||..||+.|+.+++.+...
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 298 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKV 298 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceee
Confidence 1100 011112111 124578999999999999999999999998766421
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
...+..++.+.|+.+...++.|.++.++|++|+|+.||.|.+++..
T Consensus 299 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~ 344 (687)
T PRK13351 299 DPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG 344 (687)
T ss_pred cCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC
Confidence 0123456889999999999999999999999999999999876643
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.91 E-value=2.4e-23 Score=257.01 Aligned_cols=295 Identities=20% Similarity=0.261 Sum_probs=181.3
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE----eec-eeEecccccceeeeeccc---ccccCCCCEEE
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ----QIG-ATYFPAENIRERTRELKA---NATLKVPGLLV 892 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq----~ig-a~~~~~~~i~~~t~~v~~---~~~~~~~~l~i 892 (1415)
..+|+ |+|+||+|+|||||+++|+...-.....|.+.. ... ..+.+.+ +.+...+.. .+.|....|+|
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E--~~rgiSi~~~~~~~~~~~~~inl 83 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEME--KQRGISVTSSVMQFPYRDCLINL 83 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHH--HhhCCceeeeeEEEEECCEEEEE
Confidence 45777 999999999999999999853221111111110 000 0011111 112222211 23455567999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||.+|...+.++++.+|++|||||+..|+..||..+|.++...++|+|+|+||||+. ++++...+....
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~ 156 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIE 156 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 233333222211
Q ss_pred HHHH----------------------------------------------------HHH-H-HHHHHHHHHH---HHcCC
Q 000570 973 TDVQ----------------------------------------------------NEF-N-MRLVQIVTQL---KEQGM 995 (1415)
Q Consensus 973 ~~v~----------------------------------------------------~ef-~-~~l~~I~~~L---~e~gl 995 (1415)
..+. ..| . ..+..+...| ...+.
T Consensus 157 ~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~ 236 (526)
T PRK00741 157 EVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASN 236 (526)
T ss_pred HHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhccc
Confidence 1000 000 0 0000011111 00000
Q ss_pred chhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH-----hhhc-ccccceEEEEEEE---EcCcceEEE
Q 000570 996 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLTF-RNELQCTVLEVKV---IEGHGTTID 1066 (1415)
Q Consensus 996 ~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e-----~l~~-~~~~~~~VlEvk~---~~G~Gtvi~ 1066 (1415)
. .....-.-+..+||++.||++|.||..||+.|+.+++.+... .+.+ ..+|.+.|+.+.. .+.+|.+..
T Consensus 237 ~--~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlaf 314 (526)
T PRK00741 237 E--FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAF 314 (526)
T ss_pred c--hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEE
Confidence 0 000001125679999999999999999999999998765321 1112 3458888888873 357899999
Q ss_pred EEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccccccCCCceE
Q 000570 1067 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1140 (1415)
Q Consensus 1067 ~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~~~aG~~~~ 1140 (1415)
++|++|+|+.|+.|....+.. .-+|..++...... ...|. +.+|-.+.+.++.....|+.+.
T Consensus 315 vRV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~----------~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 315 VRVCSGKFEKGMKVRHVRTGK--DVRISNALTFMAQD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EEEeccEECCCCEEEeccCCc--eEEecceEEEecCC----------ceECceeCCCCEEEEECCCCCccCCCcc
Confidence 999999999999987554321 11222221111000 01122 2356667777887777787774
No 50
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.91 E-value=1.9e-23 Score=268.47 Aligned_cols=239 Identities=25% Similarity=0.292 Sum_probs=163.9
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc-ccc---------------cccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-VQE---------------GEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~-v~~---------------geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
..++|| |+|+||+|||||||+++|++.. +.. ...+|||.+.+...+.|..
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------ 82 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------ 82 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------
Confidence 467888 9999999999999999998532 110 1124455444444333310
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
......|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+.. ++
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~~ 155 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------KE 155 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------cc
Confidence 01134589999999999999999999999999999999999999999999999888999999999999862 22
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCcceeEEeCCCCCCCChh-----------------
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP----------------- 1024 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~--~~~~~~~g~~v~iVpvSA~tGeGI~----------------- 1024 (1415)
+...+ ..++..|...+..+...+..+. ...+ .|.. .. ..-.+++.||+.|+|+.
T Consensus 156 ~~~~~----~~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~-~~-~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~ 228 (731)
T PRK07560 156 LKLTP----QEMQQRLLKIIKDVNKLIKGMA-PEEFKEKWKV-DV-EDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDY 228 (731)
T ss_pred ccCCH----HHHHHHHHHHHHHHHHHHHHhh-hhhhhcceee-cC-CCCcEeeeecccccceeHHHHHHhCCCHHHHHHH
Confidence 22221 1223333333333222222111 1111 0110 00 11236788999998886
Q ss_pred -----------------hHHHHHHHHHHHHHHHh----------------------hhcccccceEEEEEEEEcCcceEE
Q 000570 1025 -----------------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTI 1065 (1415)
Q Consensus 1025 -----------------dLl~~L~~l~~~~l~e~----------------------l~~~~~~~~~VlEvk~~~G~Gtvi 1065 (1415)
.||+.|+.+++.+.... .+...++.+.|+.+...++.|+++
T Consensus 229 ~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va 308 (731)
T PRK07560 229 YEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVA 308 (731)
T ss_pred HhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEE
Confidence 67777777776554210 122346788899999999999999
Q ss_pred EEEEEeeEEccCCEEEEeccC
Q 000570 1066 DVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1066 ~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++|++|+|+.||.|.+++..
T Consensus 309 ~~RV~sGtL~~Gd~v~~~~~~ 329 (731)
T PRK07560 309 TGRVFSGTLRKGQEVYLVGAK 329 (731)
T ss_pred EEEEEEeEEcCCCEEEEcCCC
Confidence 999999999999999887654
No 51
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.2e-23 Score=246.48 Aligned_cols=232 Identities=27% Similarity=0.361 Sum_probs=169.3
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc--------cc----------ccccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~--------v~----------~geagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|+ |+|+.|.|+|||||.+++++.. |. ....+|||.+.++++++|..
T Consensus 36 ~~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------- 103 (721)
T KOG0465|consen 36 LNKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------- 103 (721)
T ss_pred hhhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------
Confidence 347888 9999999999999999998532 11 12347899999999998874
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
..|+|||||||.+|+-.+.|++++.|.||||+++..|++.||..+|++++.+++|.|.+|||||+.+
T Consensus 104 ------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG------- 170 (721)
T KOG0465|consen 104 ------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG------- 170 (721)
T ss_pred ------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcC-------
Confidence 3599999999999999999999999999999999999999999999999999999999999999974
Q ss_pred hhHHHHHHhhh------------------------------------------------HHH-------HHHHHHHHHHH
Q 000570 962 APIVKAIKQQN------------------------------------------------TDV-------QNEFNMRLVQI 986 (1415)
Q Consensus 962 a~~~~~l~~q~------------------------------------------------~~v-------~~ef~~~l~~I 986 (1415)
+++..+|.+.. .++ ++++-+.+..+
T Consensus 171 a~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 171 ASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred CChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333221 111 11221122222
Q ss_pred HHHHHHcCCchhhhhcccC---------------CCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---hhh-----
Q 000570 987 VTQLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT----- 1043 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~---------------~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e---~l~----- 1043 (1415)
-..|.+ .|.++.. -+.++|+++.||+.+.||..||+.++.+++.+..- .+.
T Consensus 251 DE~l~e------~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~ 324 (721)
T KOG0465|consen 251 DETLAE------MFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNS 324 (721)
T ss_pred hHHHHH------HHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCC
Confidence 222222 2222222 25689999999999999999999999998754211 111
Q ss_pred ---------c-ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1044 ---------F-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1044 ---------~-~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
. .+||-+..+.+..-+ .|....+++++|+|+.||+|.-.
T Consensus 325 ~ekv~l~~~~d~~Pfv~LAFKle~g~-fGqLTyvRvYqG~L~kG~~iyN~ 373 (721)
T KOG0465|consen 325 KEKVTLSPSRDKDPFVALAFKLEEGR-FGQLTYVRVYQGTLSKGDTIYNV 373 (721)
T ss_pred ccceEeccCCCCCceeeeEEEeeecC-ccceEEEEEeeeeecCCcEEEec
Confidence 1 124555554443333 38899999999999999998644
No 52
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-23 Score=230.68 Aligned_cols=241 Identities=25% Similarity=0.340 Sum_probs=176.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
.+|+|+||+|+|||||..+|.... -.....+|||-++|...+....-.. +... ..-+++|+|+|||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~---e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQG---EQLQFTLVDCPGH 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCcc---ccceeEEEeCCCc
Confidence 559999999999999999997421 2344568999999987665433210 1000 1125899999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+.......|+...|++|||||+..|.++||.|+|-+...+....||||||||.++. + |.. ..
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE-------~-------qr~---sk 143 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE-------N-------QRA---SK 143 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc-------h-------hhh---hH
Confidence 999999999999999999999999999999999998888888889999999998742 0 000 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCC----CChhhHHHHHHHHHHHHHHHhhhcccccceEEEE
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLE 1054 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG----eGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlE 1054 (1415)
+......+..-|...+ ++++.||+++||..| ++|++|...|... +.....++..||-+.|..
T Consensus 144 i~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~---if~P~Rd~~gpflm~vDH 209 (522)
T KOG0461|consen 144 IEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESR---IFEPKRDEEGPFLMAVDH 209 (522)
T ss_pred HHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHh---hcCCCcCCCCCeEEEeee
Confidence 1112223344444443 467899999999999 6676666655432 222344567788899999
Q ss_pred EEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1055 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1055 vk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
-+.++|.|||+++.|.+|.|+.|+.|-+...+ ..-+|++..+.+..|..+
T Consensus 210 CF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 210 CFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 99999999999999999999999998874221 112366666666666544
No 53
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.90 E-value=1.4e-22 Score=250.33 Aligned_cols=296 Identities=18% Similarity=0.229 Sum_probs=180.8
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEe--eceeEeccccc-ceeeeecc---cccccCCCCEEEEe
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENI-RERTRELK---ANATLKVPGLLVID 894 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~--iga~~~~~~~i-~~~t~~v~---~~~~~~~~~l~iID 894 (1415)
.++|+ |+|+||+|+|||||+++|+...-.....|.+.-. ...+...+... +.+...+. ..+.|....|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45677 9999999999999999997532111111111000 00011111110 11111111 12345556799999
Q ss_pred CCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 895 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 895 TPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
||||.+|...+.+++..+|++|||||+..|+..+|..+|.+++..++|+|||+||||+.. +++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~-------~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI-------RDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC-------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999852 2222222111000
Q ss_pred HHH---------------------------HH---------------------------HHHHHHHH---HHHHHc--CC
Q 000570 975 VQN---------------------------EF---------------------------NMRLVQIV---TQLKEQ--GM 995 (1415)
Q Consensus 975 v~~---------------------------ef---------------------------~~~l~~I~---~~L~e~--gl 995 (1415)
+.. .| ...+..++ ..+.+. .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 000 00 00000010 111110 01
Q ss_pred chhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh-----hh-cccccceEEEEEEE--E-cCcceEEE
Q 000570 996 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1066 (1415)
Q Consensus 996 ~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~-----l~-~~~~~~~~VlEvk~--~-~G~Gtvi~ 1066 (1415)
....+ .-+..+|+++.||+++.||..||+.|+.+++.+.... +. ...+|.+.|+.+.. . ..+|.+..
T Consensus 240 ~~~~~----~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAAF----HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHHH----hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 11111 2257789999999999999999999999987654211 11 13458899999876 5 47899999
Q ss_pred EEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeeccccccccCCCceE
Q 000570 1067 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLY 1140 (1415)
Q Consensus 1067 ~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~ 1140 (1415)
++|++|+|+.|+.|....++. .-+|..++....... ....+ +.+|-.+.+.++.....|+.+.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~-------~~v~~--a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGDR-------EHVEE--AYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCCc-------eEcce--eCCCCEEEEECCCCcccCCEec
Confidence 999999999999986544321 123333322211111 11111 3346666677777777777663
No 54
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=8.5e-23 Score=222.85 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=118.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
..|+|+||+|||||||+++|++.... ....+|+|.+.+...+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 35999999999999999999864211 112466666665444433 2346
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ....
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHHH----
Confidence 99999999999999999999999999999999999999999999999999997 789999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhh
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
+......+...|...|++. .++|+||+||++|.|+..
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112234556666666642 358999999999999753
No 55
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.88 E-value=2.9e-23 Score=232.21 Aligned_cols=287 Identities=18% Similarity=0.285 Sum_probs=195.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccceee---eeccccccc--
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERT---RELKANATL-- 885 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~~t---~~v~~~~~~-- 885 (1415)
...|+|+|.||+||||||..|++..+..|+ ..|.|..+|...+.++...... -....+.+|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 345999999999999999999876655443 2445555554333322211000 000011111
Q ss_pred ----CCCCEEEEeCCCCcchhhHHhhccC--cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccC
Q 000570 886 ----KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTC 959 (1415)
Q Consensus 886 ----~~~~l~iIDTPGHe~F~~lr~rgl~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~ 959 (1415)
...-|+|||..||+.|...+..|+. ..|+.+|+|.++.|+-..|.+||.++..+.+|++||++|||+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP----- 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP----- 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc-----
Confidence 1124899999999999988887765 58999999999999999999999999999999999999999983
Q ss_pred CChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhh---------hcccCC--CcceeEEeCCCCCCCChhhHHH
Q 000570 960 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY---------YKNKDR--GETFNIVPTSAISGEGIPDLLL 1028 (1415)
Q Consensus 960 ~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~---------~~~~~~--g~~v~iVpvSA~tGeGI~dLl~ 1028 (1415)
+++.+.. +.-+...|...|...-.. +...+| ...||||.+|.+||+|++-|..
T Consensus 288 --ANiLqEt--------------mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 288 --ANILQET--------------MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred --HHHHHHH--------------HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 4443222 222333344444321100 001122 3568999999999999965544
Q ss_pred HHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC-CcceeehhhhcCCCCCcccee
Q 000570 1029 LLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRV 1107 (1415)
Q Consensus 1029 ~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~-g~i~~~Ir~ll~p~p~~e~rv 1107 (1415)
+ +.++.. ...+..+.|+.+.|.++|+++|.||++.+.+.+|+|+.+|.+++++.. |.. .|-|++.+
T Consensus 352 F-LNlls~--R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F--------~pI~iKSI-- 418 (641)
T KOG0463|consen 352 F-LNLLSL--RRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDF--------MPIPIKSI-- 418 (641)
T ss_pred H-HhhcCc--ccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCe--------eeeehhhh--
Confidence 4 444432 234567888999999999999999999999999999999988886543 211 12222211
Q ss_pred eeeeeehhhhccccceeeeccccccccCCCceEEeCCC
Q 000570 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1108 k~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
-...+++..|+.++...+++..+.......+|++|++.
T Consensus 419 HRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 419 HRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred hhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 11235556777777778888888888888888888765
No 56
>PRK12740 elongation factor G; Reviewed
Probab=99.87 E-value=2.2e-21 Score=248.32 Aligned_cols=232 Identities=25% Similarity=0.271 Sum_probs=159.3
Q ss_pred EeCCCCCHHHHHHHHHcCcccc---c---------------ccCceeEeeceeEecccccceeeeecccccccCCCCEEE
Q 000570 831 MGHVDTGKTKLLDCIRGTNVQE---G---------------EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 892 (1415)
Q Consensus 831 lGhvdaGKTTLLd~L~~t~v~~---g---------------eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~i 892 (1415)
+||+|||||||+++|++..-.. + ..+|||.......+. |....|+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~----------------~~~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE----------------WKGHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE----------------ECCEEEEE
Confidence 6999999999999997432110 0 124444444433333 33456999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||.+|...+.+++..+|++|||||+..|+..++..+|..+...++|+|||+||+|+.. ..+...+....
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~ 137 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQ 137 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863 22222222111
Q ss_pred HHH----------------------------------------------HHHHHHHHHHHHHHHHHcC-Cchhhhhccc-
Q 000570 973 TDV----------------------------------------------QNEFNMRLVQIVTQLKEQG-MNTELYYKNK- 1004 (1415)
Q Consensus 973 ~~v----------------------------------------------~~ef~~~l~~I~~~L~e~g-l~~e~~~~~~- 1004 (1415)
..+ ..........++..+.+.. -..+.|+.+.
T Consensus 138 ~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~ 217 (668)
T PRK12740 138 EKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEE 217 (668)
T ss_pred HHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCC
Confidence 100 0000000111111111110 0000111110
Q ss_pred --------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH--------------hhhcccccceEEEEEE
Q 000570 1005 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVK 1056 (1415)
Q Consensus 1005 --------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------~l~~~~~~~~~VlEvk 1056 (1415)
..+..+|++.+||++|.||..||+.|+.+++.+... ...+..++.+.|+.+.
T Consensus 218 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~ 297 (668)
T PRK12740 218 LSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTM 297 (668)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEee
Confidence 124578999999999999999999999988765421 1133456888999999
Q ss_pred EEcCcceEEEEEEEeeEEccCCEEEEecc
Q 000570 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1085 (1415)
Q Consensus 1057 ~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~ 1085 (1415)
+.++.|.++.++|++|+|+.||.|.+++.
T Consensus 298 ~~~~~G~i~~~RV~sG~L~~g~~v~~~~~ 326 (668)
T PRK12740 298 DDPFVGKLSLVRVYSGTLKKGDTLYNSGT 326 (668)
T ss_pred ecCCCCcEEEEEEeeeEEcCCCEEEeCCC
Confidence 98999999999999999999999987654
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.87 E-value=4.4e-22 Score=255.28 Aligned_cols=237 Identities=22% Similarity=0.237 Sum_probs=152.7
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
..+|+ |+|+||+|||||||+++|+...-. ....+|+|.+...+++.+ ...
T Consensus 17 ~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~~ 82 (720)
T TIGR00490 17 KFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EYE 82 (720)
T ss_pred ccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------eec
Confidence 46787 999999999999999999853110 001134443332222111 122
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+.. +++
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~~ 155 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI-------NEL 155 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc-------chh
Confidence 3445699999999999999999999999999999999999999999999999889999999999999963 222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCcceeEEeCCCCCCCC-------------------
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------- 1022 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~---~~~~~~~g~~v~iVpvSA~tGeG------------------- 1022 (1415)
... ...++..|...+..+...+... +...+ +.... ....++..|++.+++
T Consensus 156 ~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (720)
T TIGR00490 156 KLT----PQELQERFIKIITEVNKLIKAM-APEEFRDKWKVRV---EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKY 227 (720)
T ss_pred cCC----HHHHHHHHhhhhHHHHhhhhcc-CCHHHhhceEech---hhCCHHHHhhhhcccccchhHhhcCCCHHHHHHH
Confidence 222 2234444444444444333221 00000 00000 000112222322211
Q ss_pred ---------------hhhHHHHHHHHHHHHHHH---h-------------------hhcccccceEEEEEEEEcCcceEE
Q 000570 1023 ---------------IPDLLLLLVQWTQKTMVE---K-------------------LTFRNELQCTVLEVKVIEGHGTTI 1065 (1415)
Q Consensus 1023 ---------------I~dLl~~L~~l~~~~l~e---~-------------------l~~~~~~~~~VlEvk~~~G~Gtvi 1065 (1415)
+..||+.|+.+++.+... . .....++.+.|+.+...++.|+++
T Consensus 228 ~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia 307 (720)
T TIGR00490 228 CKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVA 307 (720)
T ss_pred HHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEE
Confidence 234566666655444310 0 011345788999998889999999
Q ss_pred EEEEEeeEEccCCEEEEeccC
Q 000570 1066 DVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1066 ~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++|++|+|++||.|++++..
T Consensus 308 ~~RV~sGtL~~G~~l~~~~~~ 328 (720)
T TIGR00490 308 VGRLYSGTIRPGMEVYIVDRK 328 (720)
T ss_pred EEEEEeCEEcCCCEEEEcCCC
Confidence 999999999999999887654
No 58
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.4e-22 Score=223.01 Aligned_cols=223 Identities=27% Similarity=0.307 Sum_probs=162.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccce----eeeecccccc------cCCCCEEE
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE----RTRELKANAT------LKVPGLLV 892 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~----~t~~v~~~~~------~~~~~l~i 892 (1415)
.+|+++||||||||||+.+|.+-- ....-.+|||+.+|+...+.-...+ .+......+. --.+.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 458999999999999999998642 2233358999999875433221110 0000000010 11346999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+|+|||+-....+..|+.+.|.|||||+++.. .+|||.|||..|...++ .+|||-||||++.. .+.
T Consensus 91 VDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A--- 158 (415)
T COG5257 91 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA--- 158 (415)
T ss_pred eeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH---
Confidence 99999999999999999999999999999975 68999999999998886 78999999999730 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccce
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1050 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~ 1050 (1415)
-+...+|...+. | .+..+.|+||+||..+.||+.|++.|..+++.+. .+...+.++
T Consensus 159 ---------lE~y~qIk~Fvk--G----------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~---rd~~~~p~m 214 (415)
T COG5257 159 ---------LENYEQIKEFVK--G----------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPE---RDLDKPPRM 214 (415)
T ss_pred ---------HHHHHHHHHHhc--c----------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCc---cCCCCCceE
Confidence 122233433332 1 1235679999999999999999999988765442 245667889
Q ss_pred EEEEEEEEcCc--------ceEEEEEEEeeEEccCCEEEEec
Q 000570 1051 TVLEVKVIEGH--------GTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1051 ~VlEvk~~~G~--------Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.|..+|.+.-- |-++-+.|.+|.|++||.|-+-+
T Consensus 215 ~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 215 YVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 99999877543 55677889999999999997754
No 59
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=2.3e-21 Score=203.85 Aligned_cols=165 Identities=55% Similarity=0.816 Sum_probs=128.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6899999999999999999998888777777899888776665431 112459999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 985 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~ 985 (1415)
.+++..+|++|+|||+.++...++.+++..+...++|+|||+||+|+... .. ..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~-------------------~~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NP-------------------ER 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cH-------------------HH
Confidence 99999999999999999999999999999999999999999999998621 00 00
Q ss_pred HHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 986 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 986 I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+...+....... + ..++..++++++||.+|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111111111100 0 0123457899999999999999999987654
No 60
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.86 E-value=3e-21 Score=250.95 Aligned_cols=132 Identities=26% Similarity=0.340 Sum_probs=99.6
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
+.++|| |||+||+|||||||+++|++.+- .....+|||...+...+.|..............
T Consensus 16 ~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 16 KHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred ccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 467898 99999999999999999985431 111235666665555554431100000000000
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
......|+|||||||.+|...+.++++.||+||||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 1123458999999999999999999999999999999999999999999999999999999999999997
No 61
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.85 E-value=1.4e-20 Score=215.25 Aligned_cols=111 Identities=34% Similarity=0.332 Sum_probs=91.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~------------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+|+|+||+|||||||+++|++..-.. ...+|||.+.....+. |...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~----------------~~~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF----------------WKDH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE----------------ECCE
Confidence 38999999999999999998532111 1123444444444333 3445
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.++|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||+|+.
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999986
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-20 Score=215.91 Aligned_cols=255 Identities=20% Similarity=0.283 Sum_probs=164.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeec--eeEeccccc-ceeeeeccc---ccccCCCCEEEEeCCCCcc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--ATYFPAENI-RERTRELKA---NATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~ig--a~~~~~~~i-~~~t~~v~~---~~~~~~~~l~iIDTPGHe~ 900 (1415)
.++||.|+|+|||||..+|+.-.-+...+|.+.-.-+ .+...|-.+ ++|.+.|.. .++|....|+|+|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 3999999999999999999843222222222211100 011112111 223333322 3456667799999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEeccccc---------------------CCccC
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLY---------------------GWKTC 959 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~---------------------~w~~~ 959 (1415)
|+.-+.|-+..+|.||+|||+..|+++||+.++..|+.+++|+|-+|||+|+.. .|-..
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG 173 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIG 173 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccccccc
Confidence 999999999999999999999999999999999999999999999999999963 12111
Q ss_pred CChhHHHHHHhh-------------------------hHHHHHHHHHHH-HHHHH---HHHHc--CCchhhhhcccCCCc
Q 000570 960 RNAPIVKAIKQQ-------------------------NTDVQNEFNMRL-VQIVT---QLKEQ--GMNTELYYKNKDRGE 1008 (1415)
Q Consensus 960 ~~a~~~~~l~~q-------------------------~~~v~~ef~~~l-~~I~~---~L~e~--gl~~e~~~~~~~~g~ 1008 (1415)
...+|.-.+... ...+-..+...+ ..++. .+... -+..+.+. -|.
T Consensus 174 ~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl----~G~ 249 (528)
T COG4108 174 MGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL----AGE 249 (528)
T ss_pred CCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh----cCC
Confidence 111111000000 000000000000 11111 11111 12222222 256
Q ss_pred ceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh-----c-ccccceEEEEEEEE---cCcceEEEEEEEeeEEccCCE
Q 000570 1009 TFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVNGVLHEGDQ 1079 (1415)
Q Consensus 1009 ~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~-----~-~~~~~~~VlEvk~~---~G~Gtvi~~iV~~G~Lk~GD~ 1079 (1415)
..|+|..||+++.||..+|+.++.|++.+...... + .+.|.+.|+.+... .++-+++..+|.+|.+..|..
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMk 329 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMK 329 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCce
Confidence 78999999999999999999999998766544322 2 33488889888642 467788999999999999998
Q ss_pred EEEecc
Q 000570 1080 IVVCGL 1085 (1415)
Q Consensus 1080 Ivv~g~ 1085 (1415)
+...-+
T Consensus 330 v~h~rt 335 (528)
T COG4108 330 VTHVRT 335 (528)
T ss_pred eeeeec
Confidence 866543
No 63
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.2e-20 Score=210.11 Aligned_cols=184 Identities=24% Similarity=0.267 Sum_probs=122.8
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccce---eeeecc-----ccccc
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRE---RTRELK-----ANATL 885 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~---~t~~v~-----~~~~~ 885 (1415)
|+|+||+++|||||+++|....+..+. ..|+|..+....+....-.. ....+. ..+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 789999999999999999865443322 14555433222221111000 000000 01123
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccC--cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
....++|||||||..|...+.+++. .+|++|||||+.+|+++++.+++.++...++|+|||+||+|++. ..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~- 154 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------AN- 154 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HH-
Confidence 3457999999999999998888875 79999999999999999999999999999999999999999862 11
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchh-----------hhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-----------LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e-----------~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+...+..+...|...|+..- ....+..++..+|+|++||+||+||+.|+..|..
T Consensus 155 --------------~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 --------------ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred --------------HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 112222233333333232210 0112234566789999999999999999887754
No 64
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2e-21 Score=219.38 Aligned_cols=290 Identities=24% Similarity=0.293 Sum_probs=194.6
Q ss_pred CcccccccCCCceeEEeCCCCCHHHHHHHHHcC--------ccccc----------ccCceeEeeceeEecccccceeee
Q 000570 816 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGT--------NVQEG----------EAGGITQQIGATYFPAENIRERTR 877 (1415)
Q Consensus 816 ~~~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t--------~v~~g----------eagGITq~iga~~~~~~~i~~~t~ 877 (1415)
.++....+|+ |+||.|+|+||||...+|++- .|..| +.+|||.|..+..|.|.
T Consensus 30 ~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------- 100 (753)
T KOG0464|consen 30 INPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------- 100 (753)
T ss_pred CCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc-------
Confidence 3455567899 999999999999999999852 22222 34778888777766554
Q ss_pred ecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCc
Q 000570 878 ELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 957 (1415)
Q Consensus 878 ~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~ 957 (1415)
++.|++||||||.+|+-.+.|.+++.|++|.|+|++.|+++||..+|++...+++|.+++|||||.+
T Consensus 101 ---------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~---- 167 (753)
T KOG0464|consen 101 ---------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL---- 167 (753)
T ss_pred ---------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----
Confidence 4569999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCChhHHHHHHhhhHHH-------------------------------------------------------HHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDV-------------------------------------------------------QNEFNMR 982 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v-------------------------------------------------------~~ef~~~ 982 (1415)
.++|...+....+.+ ..++...
T Consensus 168 ---~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~ 244 (753)
T KOG0464|consen 168 ---AANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEA 244 (753)
T ss_pred ---hhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHH
Confidence 345544443321110 0111111
Q ss_pred HHHHHHHHHHcC--Cc---hhhhhcc----------------cCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 983 LVQIVTQLKEQG--MN---TELYYKN----------------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 983 l~~I~~~L~e~g--l~---~e~~~~~----------------~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
-..++.++.... |. .+-|..| ..-...+|+.+.||+++.||..||+.+.-+++.+-...
T Consensus 245 knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern 324 (753)
T KOG0464|consen 245 KNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN 324 (753)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcc
Confidence 111111111100 00 0000011 00124679999999999999999999887776443222
Q ss_pred ---h-hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhh
Q 000570 1042 ---L-TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1117 (1415)
Q Consensus 1042 ---l-~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV 1117 (1415)
| -|.+++.+..+.|-..+.+|+.+..+||+|+|+..-.|.- .+|.....|-.|+.|-.- .|.+|
T Consensus 325 yeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~n--in~~~se~~~kl~~pfad----------e~~~i 392 (753)
T KOG0464|consen 325 YEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFN--INGMCSEGILKLFLPFAD----------EHREI 392 (753)
T ss_pred hHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeee--cccccccchHhhhccchh----------hhhhh
Confidence 2 2355666666666778899999999999999999876642 334444455566655421 12222
Q ss_pred ccc-cceeeeccccccccCCCceEEe
Q 000570 1118 KAA-QGIKITAQGLEHAIAGTGLYVV 1142 (1415)
Q Consensus 1118 ~aa-~gv~i~~~gL~~~~aG~~~~v~ 1142 (1415)
..- .|..-...||.....|+.++..
T Consensus 393 ~qlsagnialt~glk~tatgdtivas 418 (753)
T KOG0464|consen 393 EQLSAGNIALTAGLKHTATGDTIVAS 418 (753)
T ss_pred hhcccccEEEEecceeeccCCeEEec
Confidence 221 2322233588888889887644
No 65
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=1.6e-20 Score=206.21 Aligned_cols=175 Identities=25% Similarity=0.260 Sum_probs=122.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecc---------cc--------cccC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELK---------AN--------ATLK 886 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~---------~~--------~~~~ 886 (1415)
+|+|+||+|||||||+.+|.+... .....+|+|..+++..+.+........... .. ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 489999999999999999986621 334467888888877765531100000000 00 0011
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
...|+|||||||..|...+.+++..+|++|||||+.++ +.++|.++|..+...++ |+|||+||+|+.. ...+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~------~~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK------EEQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC------HHHH
Confidence 25699999999999999999999999999999999984 78899999988887776 6999999999962 1111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+..+...+.... ...+++|++||++|+||.+|+.+|...+
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 111122222222111 1246899999999999999999887543
No 66
>PTZ00416 elongation factor 2; Provisional
Probab=99.84 E-value=4e-20 Score=240.13 Aligned_cols=126 Identities=26% Similarity=0.323 Sum_probs=98.7
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
...+|| |+|+||+|||||||+++|++..- .....+|||.+.+..++.|..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 456887 99999999999999999986321 011235666666555554432100 000
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
......|+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 1113459999999999999999999999999999999999999999999999999999999999999996
No 67
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=6.7e-21 Score=209.98 Aligned_cols=172 Identities=26% Similarity=0.380 Sum_probs=120.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~g-------------------------------eagGITq~iga~~~~~~~i~~~ 875 (1415)
.|+|+||+|||||||+++|++..-... ..+|+|.++...++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-------- 72 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-------- 72 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--------
Confidence 389999999999999999985321110 01344444333332
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccccc
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLY 954 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~ 954 (1415)
.+....++|||||||..|...+..++..+|++|||||+..|+..++..++.++...++| +|||+||||+..
T Consensus 73 --------~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 73 --------STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred --------ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 23445799999999999998888899999999999999999999999999988888865 677999999862
Q ss_pred CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 955 GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 955 ~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
|. .. .+...+..+...+...++ ..+++||+||++|.||.+....+.++.
T Consensus 145 -~~----~~--------------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~ 193 (208)
T cd04166 145 -YS----EE--------------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYS 193 (208)
T ss_pred -CC----HH--------------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCC
Confidence 21 00 111111222223333332 135899999999999988775555555
Q ss_pred HHHHHHhhhcc
Q 000570 1035 QKTMVEKLTFR 1045 (1415)
Q Consensus 1035 ~~~l~e~l~~~ 1045 (1415)
.+.|++.|...
T Consensus 194 g~~~~~~~~~~ 204 (208)
T cd04166 194 GPTLLEHLETV 204 (208)
T ss_pred CCcHHHHHhcC
Confidence 66777766543
No 68
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=2.5e-20 Score=209.47 Aligned_cols=194 Identities=28% Similarity=0.345 Sum_probs=126.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecc---cccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELK---ANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~---~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|+|+||+|+|||||+++|++........+.+. -|.+...+.. -+.+...+. ..+.+....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986432211111110 0111111110 011111111 1123445579999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH------
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ------ 976 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~------ 976 (1415)
..+.++++.+|++|||||+.+|+..+|..+|.++...++|+|||+||+|+. ++++...+......+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i~~~~~~~~~~~ 151 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEIKEKLSSDIVPM 151 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999999999999999999999999996 3455444443221110
Q ss_pred ----------------HHHHHHHHHHHHHHHHcCCchhhhhccc---------------CCCcceeEEeCCCCCCCChhh
Q 000570 977 ----------------NEFNMRLVQIVTQLKEQGMNTELYYKNK---------------DRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 977 ----------------~ef~~~l~~I~~~L~e~gl~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
..+-+.+...-+.|++ .|++.. .-+..+|+++.||.++.|+..
T Consensus 152 ~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e------~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ 225 (237)
T cd04168 152 QKVGLAPNICETNEIDDEFWETLAEGDDELLE------KYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEE 225 (237)
T ss_pred ECCcEeeeeeeeeeccHHHHHHHhcCCHHHHH------HHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHH
Confidence 0111111111112222 222221 125789999999999999999
Q ss_pred HHHHHHHHHH
Q 000570 1026 LLLLLVQWTQ 1035 (1415)
Q Consensus 1026 Ll~~L~~l~~ 1035 (1415)
||+.|+.+++
T Consensus 226 ll~~~~~~~p 235 (237)
T cd04168 226 LLEGITKLFP 235 (237)
T ss_pred HHHHHHHhcC
Confidence 9999988764
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=9.7e-21 Score=210.40 Aligned_cols=174 Identities=25% Similarity=0.382 Sum_probs=118.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i~~~ 875 (1415)
+|+|+||+|||||||+++|++..-. ....+|+|.++..+.+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~------- 73 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE------- 73 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-------
Confidence 3899999999999999999743110 01123444444443332
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccC-------CCChhHHHHHHHHHhcC-CceEEEE
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 947 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~-------Gv~~QT~E~l~llk~~~-vP~IVaI 947 (1415)
+..+.|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++..++ .|+|||+
T Consensus 74 ---------~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 74 ---------TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred ---------eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 344579999999999999999999999999999999998 57789999998888877 5899999
Q ss_pred Eeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 948 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 948 NKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
||||++. .|. .. .|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~---~~---------------~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWS---EE---------------RYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred Ecccccccccc---HH---------------HHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999962 121 01 1111222233334444432 13579999999999999744
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 000570 1027 LLLLVQWTQKTMVEKLTF 1044 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l~~ 1044 (1415)
-..+.++....|.+.|..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 333333333555555543
No 70
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2e-20 Score=209.75 Aligned_cols=282 Identities=20% Similarity=0.275 Sum_probs=189.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeee--------------ecccc--------cc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTR--------------ELKAN--------AT 884 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~--------------~v~~~--------~~ 884 (1415)
.|+|+|..|+||||||..|+......|..+. .++.+.++.+.-..++. .+++. ..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrA---Rln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRA---RLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCee---eeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3899999999999999999876655543211 12222222221111111 11111 01
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCc--ccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~--aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
-...-++|||..||..|......|+.. .|+|+|||+|+.|+...|++||.++.++++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112359999999999999988888775 7999999999999999999999999999999999999999973 11
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-----------cccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY-----------KNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~-----------~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
.+ ...+..+.+.|...|.....+. .+...+..+|||.+|.++|+|+.- +..++
T Consensus 320 ~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fL 383 (591)
T KOG1143|consen 320 GL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFL 383 (591)
T ss_pred hH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHH
Confidence 11 2223344444555554321111 012246779999999999999954 44444
Q ss_pred HHHHHHH--HHhhh-cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceee
Q 000570 1032 QWTQKTM--VEKLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1108 (1415)
Q Consensus 1032 ~l~~~~l--~e~l~-~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk 1108 (1415)
..+.+.. .++.. ...+..+.|.|+|.++..|+++-++|..|.|++|+.+++++.. .+.+..++|.
T Consensus 384 n~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~------------DG~F~~itV~ 451 (591)
T KOG1143|consen 384 NCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMK------------DGTFEKITVG 451 (591)
T ss_pred hhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCC------------CCceeEEEee
Confidence 3333211 11111 1345678999999999999999999999999999999987654 2223344444
Q ss_pred eeeeeh---hhhccccceeeeccccccccCCCceEEeCCC
Q 000570 1109 GTYLHH---KQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1109 ~~~~~~---keV~aa~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
++.-+. .-|.+++...+++...+.+....+|+++.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 443322 2345677778888877778888888887654
No 71
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=8.5e-20 Score=190.76 Aligned_cols=158 Identities=33% Similarity=0.463 Sum_probs=115.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+|+|+|++++|||||+++|++.. +......|+|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 68999999999999999998643 2222235677666554443220 23599999999999988
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..++..+|++|||+|+.+++.+++.+.+..+...+. |+|+++||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999999999998888777776 99999999999621 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+...++ ..++++++||++|.||.+|+..|..
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1222222322111 2368999999999999999887753
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=5.7e-20 Score=199.66 Aligned_cols=180 Identities=27% Similarity=0.403 Sum_probs=123.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC-------cccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t-------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.|+|+||+|+|||||+++|++. .......+|+|.+++...+.+...... ... .........++|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL-REL-INPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc-ccc-ccccccCceEEEEECCCcH
Confidence 4899999999999999999862 122233567888887666554311000 000 0011224569999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|.....+++..+|++|+|||+.+|.+.++.+++.++...++|+||++||+|+... ..+...+. .+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHHH-
Confidence 99888888889999999999999999999988888877788999999999999621 11111110 01111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111211111 236899999999999999999998766543
No 73
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.6e-20 Score=213.75 Aligned_cols=263 Identities=24% Similarity=0.403 Sum_probs=186.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEeccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i 872 (1415)
+...++|+||||+||||+-+.|+..... ..+..|-|...|..+|.+
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt--- 154 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET--- 154 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe---
Confidence 3445899999999999998887632100 011122333333333332
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-----C--ChhHHHHHHHHHhcCC-ceE
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFI 944 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-----v--~~QT~E~l~llk~~~v-P~I 944 (1415)
....++|+|+|||..|...+..|++++|+++|||++..| + ..||++|..+++..++ .+|
T Consensus 155 -------------e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 155 -------------ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred -------------cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 234699999999999999999999999999999999764 3 3699999999999996 789
Q ss_pred EEEEeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh
Q 000570 945 VALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023 (1415)
Q Consensus 945 VaINKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 1023 (1415)
|+|||||-+. +|.. .+|.+....+...|...|++. -..+-++|+|+++|.++
T Consensus 222 v~vNKMddPtvnWs~------------------eRy~E~~~k~~~fLr~~g~n~---------~~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSN------------------ERYEECKEKLQPFLRKLGFNP---------KPDKHFVPVSGLTGANV 274 (501)
T ss_pred EEEEeccCCccCcch------------------hhHHHHHHHHHHHHHHhcccC---------CCCceeeecccccccch
Confidence 9999999742 4543 455666677777788788774 35678999999999999
Q ss_pred hhHHHH-HHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehh
Q 000570 1024 PDLLLL-LVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1094 (1415)
Q Consensus 1024 ~dLl~~-L~~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir 1094 (1415)
.+.... ..+|..+.+++.|. .+.|++|+|.+-+ ..+||++.+.|.+|.++.|+.+++++...
T Consensus 275 k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~------- 345 (501)
T KOG0459|consen 275 KDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKT------- 345 (501)
T ss_pred hhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCc-------
Confidence 988863 33343333333222 2456889988743 57889999999999999999999976431
Q ss_pred hhcCCCCCccceeeeeeeehhhhc---cccceeeeccccccccCCCceEEeCCCcc
Q 000570 1095 ALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGPDDD 1147 (1415)
Q Consensus 1095 ~ll~p~p~~e~rvk~~~~~~keV~---aa~gv~i~~~gL~~~~aG~~~~v~~~e~~ 1147 (1415)
.+.|.++|....++. ++-.++|.+.|++.-..-.+|+++.+...
T Consensus 346 ---------~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 346 ---------NVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred ---------ceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 123344444333333 33348999999887555555888877653
No 74
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=6.6e-20 Score=209.42 Aligned_cols=129 Identities=28% Similarity=0.370 Sum_probs=93.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEeccccc-ceeeeecc---cccccCCCCEEEEeCC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENI-RERTRELK---ANATLKVPGLLVIDTP 896 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i-~~~t~~v~---~~~~~~~~~l~iIDTP 896 (1415)
+|| |+|+||+|+|||||+++|++..-.....|.+.. ..|.+...+... +.+...+. ..+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 577 999999999999999999864322222111110 011111111110 11111111 1234556679999999
Q ss_pred CCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 897 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 897 GHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
||.+|...+.++++.+|++|||||+..|+..+|..+|.++...++|+|||+||+|+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999988899999999999999999999999999999998999999999999985
No 75
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.82 E-value=2.5e-20 Score=181.97 Aligned_cols=109 Identities=65% Similarity=1.020 Sum_probs=104.1
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeec
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1127 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~ 1127 (1415)
++|+|+|++..+|+|+|++++|++|+||.||+|++|+++||++|+||+||+|+|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEeCCCccHHHHHHHHH
Q 000570 1128 QGLEHAIAGTGLYVVGPDDDLEDVKEEAM 1156 (1415)
Q Consensus 1128 ~gL~~~~aG~~~~v~~~e~~~~~~~~~~~ 1156 (1415)
+||+.++||++|+|+.++++++.+.++++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~~ 109 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEVM 109 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999998888776543
No 76
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.82 E-value=1.2e-20 Score=185.92 Aligned_cols=92 Identities=38% Similarity=0.601 Sum_probs=82.3
Q ss_pred ccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHH
Q 000570 1168 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1244 (1415)
Q Consensus 1168 ~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~ 1244 (1415)
....+||||||++||||||..+|. +++++++|++++|||||++||.+|++ .+|+||||||++++.++.+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~------~~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASA------SNAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHH------HC-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHh------hCCEEEEeeCCCCHHHHHHHH
Confidence 456799999999999999999874 45789999999999999999999998 479999999999999999999
Q ss_pred HcCCeEEEcchhhchHHHHHH
Q 000570 1245 ELGVKIFIADIIYHLFDQFTA 1265 (1415)
Q Consensus 1245 ~~gV~I~~~~IIY~L~d~~~~ 1265 (1415)
+.||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
No 77
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.81 E-value=7.5e-20 Score=203.32 Aligned_cols=120 Identities=33% Similarity=0.427 Sum_probs=91.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccccCCCCEE
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 891 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~ 891 (1415)
|+|+||+|||||||+++|+...-. ....+|||.......+.+...... ........|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 999999999999999999853210 112345555544333332210000 0001134689
Q ss_pred EEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998999999999999986
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=1.2e-19 Score=193.54 Aligned_cols=158 Identities=30% Similarity=0.395 Sum_probs=110.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccccc---------------ccCceeEeeceeEecccccceeeeecccccccCCCCEEE
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEG---------------EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 892 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~g---------------eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~i 892 (1415)
|+|+||+++|||||+++|++...... ...|+|.+...+.+.+.. .......|+|
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~~~l 71 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYLLNL 71 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEEEEE
Confidence 99999999999999999986421100 112333322221111100 0112235889
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||..|..++.+++..+|++|||+|+.++...++...|..+...++|+|+|+||+|+.. .....
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-------~~~~~------ 138 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS-------ADPER------ 138 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc-------CCHHH------
Confidence 99999999999999999999999999999999999999888888778899999999999852 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e-~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+...+.. .++. ..++|++||++|.||.+|+.+|...+
T Consensus 139 -------------~~~~~~~~~~~~------------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 139 -------------VKQQIEDVLGLD------------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------------HHHHHHHHhCCC------------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 0111111 1211 13589999999999999999887543
No 79
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=3.9e-19 Score=193.43 Aligned_cols=157 Identities=31% Similarity=0.357 Sum_probs=109.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcC--cccccc--------------cCceeEeeceeEecccccceeeeecccccccC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT--NVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t--~v~~ge--------------agGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
+|+ |+|+||+++|||||+++|++. .+.... ..|+|.+.....+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 466 999999999999999999862 222111 1222222211111 123
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...++|||||||..|..++..+++.+|++|||||+.+++.+++..++..+...++|+|||+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34699999999999999999999999999999999999989998888888788999999999999962 11111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 1027 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl 1027 (1415)
.+..+...+...+.... ...+++|++||++|.|+.++-
T Consensus 137 ---------------~~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 137 ---------------VVDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred ---------------HHHHHHHHHHHhCCccc--------cCccCEEEeehhccccccccc
Confidence 11222222333222111 123689999999999996663
No 80
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=3.9e-18 Score=191.36 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=141.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC-Ccc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-HES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG-He~ 900 (1415)
.+|+..|||+|.+|+|||||||+|++..+.. +.+ ...+++.+...+. .....++.|||||| |..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------vS~------k~QTTR~~I~GI~---t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI------VSP------KPQTTRNRIRGIV---TTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe------ecC------CcchhhhheeEEE---EcCCceEEEEeCCCCCCc
Confidence 4678889999999999999999999987652 111 1111122212221 12235799999999 332
Q ss_pred ---h----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 901 ---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 901 ---F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
+ ......++..+|+++||||+.+++.+.....++.++..++|+|+++||||+... .
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~----------- 130 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------K----------- 130 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------H-----------
Confidence 1 223446778899999999999999999999999999988999999999999742 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH------------------
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~------------------ 1035 (1415)
..+..+...+... ..+..+||+||++|.|+..|+..+..+++
T Consensus 131 -------~~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 131 -------TVLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred -------HHHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 0012222233222 13448999999999999999999987764
Q ss_pred ---HHHHHhhhc--cc--cc--ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeeh
Q 000570 1036 ---KTMVEKLTF--RN--EL--QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1093 (1415)
Q Consensus 1036 ---~~l~e~l~~--~~--~~--~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~I 1093 (1415)
+.+++++.. .+ |. ...|.++...+.....+.+.|+ +=|.++.-++.|-+|..+..|
T Consensus 191 ~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~iK~I 255 (298)
T COG1159 191 LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMIKKI 255 (298)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHHHHH
Confidence 123333322 12 21 2223332222344445555554 447777777788777654444
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=1.2e-18 Score=186.43 Aligned_cols=170 Identities=35% Similarity=0.443 Sum_probs=118.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccccc----------------CceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~gea----------------gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+|+|++|+|||||+++|++.....+.. .|+|.+.....+ .+....+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------EWPDRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----------------eeCCEEE
Confidence 38999999999999999998765543321 223333222211 1223469
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+||||||+.+|..++..++..+|++|+|+|+.++...++.+++.++...+.|++|++||+|+.. ...+
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~------ 132 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDL------ 132 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcH------
Confidence 9999999999999999999999999999999999999999999999888999999999999962 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+..+...+...++.... -........+++|++||++|.||.+++.+|..++
T Consensus 133 ---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 133 ---------EEVLREIKELLGLIGFISTK-EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---------HHHHHHHHHHHccccccchh-hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 11122222333322211000 0000012457999999999999999999987764
No 82
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.77 E-value=3.8e-18 Score=195.26 Aligned_cols=125 Identities=24% Similarity=0.272 Sum_probs=90.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecc---cccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELK---ANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~---~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|+|+||+|+|||||+++|++........+.++ .|.+...+.. .+.+...+. ..+.|....++|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999986432211111111 1111111110 011111111 1123445579999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.+++..+|++|+|||+..|...+|..+|.++...++|+|||+||+|+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
No 83
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=2.7e-18 Score=189.95 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=112.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccc-------------------cCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGE-------------------AGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~ge-------------------agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
|+|+||+|||||||+++|+........ ..|+|.......+.+... .....
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~~~~~ 71 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------KGKSY 71 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------CCCEE
Confidence 999999999999999999865432211 122332222222211110 01123
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.|+|||||||.+|...+.+++..+|++|+|||+.+|...++..++..+...++|+|||+||+|++.. . ...+
T Consensus 72 ~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~--~~l~----- 143 (213)
T cd04167 72 LFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLIL-E--LKLP----- 143 (213)
T ss_pred EEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcc-c--ccCC-----
Confidence 5899999999999999999999999999999999999999988888888888999999999998620 0 0000
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
.......|...+..+...+...++....++- .-...++..||..|+++.
T Consensus 144 ---~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 144 ---PNDAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 0112233444455555555555543321110 011247889999999984
No 84
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.5e-17 Score=194.51 Aligned_cols=85 Identities=36% Similarity=0.467 Sum_probs=68.7
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHH
Q 000570 510 MSKQVREMQEA-LARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE-KLLKKKQEGKLLTGKQKE 587 (1415)
Q Consensus 510 ~~~~~~~~~e~-~~~~~~eee~~~reeEE~~r~eEEe~~~~ee~er~~ee~~~~k~~~~ke-k~~~~k~e~~~~~~k~~~ 587 (1415)
+++++++++++ ++++|++||+.||++||+++++++|++.+|.++++++.+++++++++.+ ++++.+|++. ++++
T Consensus 219 ~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~----~a~a 294 (1064)
T KOG1144|consen 219 MQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEE----AALA 294 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHH----HHHH
Confidence 33344444444 4456778888899999999999999999999999999999999998888 9999999987 7888
Q ss_pred HHHHHHHHHHH
Q 000570 588 EARRLEAMRNQ 598 (1415)
Q Consensus 588 e~~~~~~~~~~ 598 (1415)
++++++++..+
T Consensus 295 ea~l~~ll~sg 305 (1064)
T KOG1144|consen 295 EAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHhcC
Confidence 88888888766
No 85
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=2.8e-17 Score=188.43 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=131.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F---- 901 (1415)
.|+|+|++|+|||||+++|++.++.. ....++|++.-..... .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 58999999999999999999877542 3334445432111110 11235899999996432
Q ss_pred ----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 902 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 902 ----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
......++..+|++|||||+.++.... ..++..+...+.|+|+|+||+|++. ... +
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~----~--------- 125 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDK----L--------- 125 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHH----H---------
Confidence 112345678899999999999876654 4556777778899999999999862 000 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH---------------------H
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ---------------------K 1036 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~---------------------~ 1036 (1415)
......+... ....++||+||++|.||++|+.+|..+++ +
T Consensus 126 ------~~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 126 ------LPLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred ------HHHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 0011111110 11237999999999999999999987653 2
Q ss_pred HHHHhhh--ccc--ccc-eEEEEEEEE-cCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhh
Q 000570 1037 TMVEKLT--FRN--ELQ-CTVLEVKVI-EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1095 (1415)
Q Consensus 1037 ~l~e~l~--~~~--~~~-~~VlEvk~~-~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ 1095 (1415)
.+.+++. ... |.. ...++.+.. ++....+.+.|+ +=+.++.-+|+|.+|..+.+|..
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i~~ 249 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAIGI 249 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHHHH
Confidence 2333331 122 211 222222222 222333555555 44777888888988876655543
No 86
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=1.9e-17 Score=195.51 Aligned_cols=217 Identities=25% Similarity=0.315 Sum_probs=138.4
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
-+...|+|+|++|+|||||+++|++..+.. ....+.|.+.....+ .+....|.||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~----------------~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGII----------------TLKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEE----------------EeCCeEEEEEECCCcCCC
Confidence 355679999999999999999999876642 122233332211111 12234589999999743
Q ss_pred hhhH-------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 901 FTNL-------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 901 F~~l-------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
|..+ ....+..||++|||||+..++...+..++..++..+.|+|+|+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 3221 12347789999999999998888877788888888889999999999852 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH------------------
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~------------------ 1035 (1415)
+..+...+... ....++||+||++|.||.+|+.+|..+++
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 11122222211 12357999999999999999999987643
Q ss_pred ---HHHHHhhhc--cc--ccc--eEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhh
Q 000570 1036 ---KTMVEKLTF--RN--ELQ--CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096 (1415)
Q Consensus 1036 ---~~l~e~l~~--~~--~~~--~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~l 1096 (1415)
+.+.+++.. .. |.. ..|.......+....+.+.|+ +=+.++.-+|+|.+|..+.+|...
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~~~ 302 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIGAK 302 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHHHH
Confidence 233333321 22 222 222222222222234666665 558888888899988776666543
No 87
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=5.6e-17 Score=187.85 Aligned_cols=217 Identities=23% Similarity=0.318 Sum_probs=136.9
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccc-ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.+|+.+|+|+|++|+|||||+++|++..+... ...++|.+... .+. ......++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-------------~i~---~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-------------GIV---TEDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-------------EEE---EcCCceEEEEECCCCCC
Confidence 35788899999999999999999998765421 11222211100 000 01124699999999654
Q ss_pred h--------hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 F--------~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
. ......++..+|++|||+|+.++++.....++..+...++|+|+|+||+|++.. ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-----~~---------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-----KE---------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-----HH----------
Confidence 3 233445678899999999999988888888888888778999999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH-----------------
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ----------------- 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~----------------- 1035 (1415)
.+..++..+... ....++|++||++|.|+.+|+.+|..+++
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011122222221 12458999999999999999999887652
Q ss_pred ----HHHHHhhh----cccccce-EEEEEEEEcCcce-EEEEEEEeeEEccCCEEEEeccCCcceeehhh
Q 000570 1036 ----KTMVEKLT----FRNELQC-TVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1095 (1415)
Q Consensus 1036 ----~~l~e~l~----~~~~~~~-~VlEvk~~~G~Gt-vi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ 1095 (1415)
..+.+++. ..-|... ..++.+... |. .+.+.|+ +-+.++.-+|+|.+|..+.+|+.
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHHH
Confidence 11222221 1112121 222222222 33 2555444 44777888888988876665554
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=2e-17 Score=171.43 Aligned_cols=147 Identities=25% Similarity=0.309 Sum_probs=106.2
Q ss_pred eEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh----
Q 000570 829 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 903 (1415)
Q Consensus 829 ~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~---- 903 (1415)
+|+|++|+|||||+++|.+.+.. .....++|+......+. +....+.|||||||..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE----------------WGGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE----------------ECCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999976532 22233444433222221 1224589999999988654
Q ss_pred ----HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 ----lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.....+..+|++|+|+|+.+++...+..++.+++..++|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~--------------- 122 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-------ED--------------- 122 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh-------HH---------------
Confidence 3445678899999999999998888888888888889999999999999631 10
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
....+...+ ..+++++||++|.||.+|+.+|+..
T Consensus 123 ------~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 123 ------EAAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------HHHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 011122211 1268999999999999999998753
No 89
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=9.6e-17 Score=195.52 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=116.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
..+.|+|+|++++|||||+++|++... ......|+|.+.....+.+ ....++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~----------------~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER----------------NGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE----------------CCcEEEEEECCCccccc
Confidence 345699999999999999999997653 2344566665543333222 22358999999975543
Q ss_pred ----------hHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 903 ----------NLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 903 ----------~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.++ .+++..||++|||||+.+|++.++..++.++...++|+|||+||+|++.. ..
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-----~~--------- 300 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD-----EK--------- 300 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC-----HH---------
Confidence 222 34678899999999999999999999999999999999999999999610 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.+..+...+... +. +-..+|++++||++|.||.+|+.++..++.
T Consensus 301 ----------~~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 301 ----------TREEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ----------HHHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011111222111 10 013479999999999999999999887664
No 90
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=1.3e-17 Score=174.78 Aligned_cols=147 Identities=24% Similarity=0.310 Sum_probs=103.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
.|+++|.+|+|||||+|+|++.....+..+|+|.+.....+.+.. ..+.||||||..++...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 489999999999999999999998888999999877555544322 35999999996554321
Q ss_pred ----Hhhc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 905 ----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 905 ----r~rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.... ...+|++|+|+|+.+ ..+....+.++..+++|+|+|+||+|..... ...+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 1222 357999999999988 3556667778888999999999999986210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
....+...| .+|+||+||.+|.|+.+|+..|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 011111111 2699999999999999998764
No 91
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-17 Score=200.52 Aligned_cols=117 Identities=34% Similarity=0.509 Sum_probs=98.4
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~ 882 (1415)
....+|| |||+.|||||||||.|.|+..+. .+..++|||...++.+.-.
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~------------- 69 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH------------- 69 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-------------
Confidence 3467888 99999999999999999985542 1223567776666554221
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....|+|||+|||.+|......+++.||+++++||+..|+.+||...++++...+...|+||||||++
T Consensus 70 ---~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 70 ---KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred ---CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 23459999999999999999999999999999999999999999999999999999999999999975
No 92
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=1.2e-16 Score=168.52 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=105.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......+...+....+... .....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE--------------GKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC--------------CEEEEEEEEeCCCchhhhhhhH
Confidence 48999999999999999999876654332222222221111111 1113488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..+..+|++|||+|+.++...+... ++..++.. ++|+|||+||+|+.. .. .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~~------------~------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------SV------------T------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------hH------------H-------
Confidence 9999999999999998865544433 34445443 689999999999841 00 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... .+... ..++++++||++|.||.+++..++..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999887654
No 93
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.8e-16 Score=193.64 Aligned_cols=160 Identities=23% Similarity=0.333 Sum_probs=115.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.+.|+|+|++|+|||||+++|++.. +..+...|+|.+.....+.+ ....++||||||+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~----------------~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER----------------DGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE----------------CCeeEEEEECCCCCCCcc
Confidence 4669999999999999999999765 33455667776654333322 224589999999643
Q ss_pred -------hhhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 -------F~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..++ .+++..||++|||||+..|++.|+..++.++...++|+|||+||+|+.. ...
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-------~~~-------- 301 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKT-------- 301 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-------HHH--------
Confidence 33233 3577889999999999999999999999999999999999999999862 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+. ..+...|.. ...+|++++||++|.||.+|+..+..++.
T Consensus 302 ---~~~~~---~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 302 ---MEEFK---KELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ---HHHHH---HHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111 111111111 13479999999999999999998877654
No 94
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=9.9e-17 Score=172.39 Aligned_cols=150 Identities=23% Similarity=0.347 Sum_probs=104.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc--cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
..+.+.|+|+|++|+|||||+++|++..+ ......|.|+++..+..+ ..+.||||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-------------------CcEEEEeCCCCc
Confidence 35677899999999999999999998752 223344555554322211 258999999963
Q ss_pred ----------chhhHHhhc---cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 900 ----------SFTNLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 900 ----------~F~~lr~rg---l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
.|..+.... ...+|++|+|+|+.+++..++..+++++...++|+||++||+|+... .++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~-- 147 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SEL-- 147 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHH--
Confidence 344443323 34578999999999999999999999998899999999999998621 111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
...+..+...|... +..+++|++||++|+||.
T Consensus 148 -------------~~~~~~i~~~l~~~-------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 148 -------------NKQLKKIKKALKKD-------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -------------HHHHHHHHHHHhhc-------------cCCCceEEEECCCCCCCC
Confidence 11222333333322 123589999999999983
No 95
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=1.1e-16 Score=168.75 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=96.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~--- 902 (1415)
|+|+|+|++|+|||||+++|++..+......+.|..+....+. +....++||||||+..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----------------YKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc----------------cCceEEEEEECCCcCCccccC
Confidence 6799999999999999999998765433333333322211111 122469999999985321
Q ss_pred -------hHHhhccCcccceEEEEeccCCCC---hhHHHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 903 -------NLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 903 -------~lr~rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
.+. .....+|++|||+|+.+... .....++..++.. ++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~------- 130 (168)
T cd01897 65 RNTIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------ED------- 130 (168)
T ss_pred CchHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hh-------
Confidence 111 11234689999999987432 2223455556554 7999999999999621 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+.. ...+... ..++++++||++|.||.+|+.+|...
T Consensus 131 ------------~~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 131 ------------LSE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HHH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 000 1111111 23589999999999999999988754
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=5.4e-17 Score=191.09 Aligned_cols=152 Identities=25% Similarity=0.379 Sum_probs=120.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh--
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~-- 902 (1415)
|+|+|+|.+|+|||||+|+|+++..+ .....|+|.+.-..... |....+.+|||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~----------------~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAE----------------WLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeE----------------EcCceEEEEECCCCCcCCch
Confidence 88999999999999999999998765 34567777765433332 334569999999976432
Q ss_pred ---hH----HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 903 ---NL----RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 903 ---~l----r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
.. ...++..||++|||||+..|++++..+...+|+..+.|+|+|+||+|-...
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-------------------- 127 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-------------------- 127 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--------------------
Confidence 22 345677899999999999999999999999999888999999999997421
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
......|...||. .++||||.+|.||.+|++.++.+++
T Consensus 128 --------e~~~~efyslG~g--------------~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 128 --------EELAYEFYSLGFG--------------EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --------hhhHHHHHhcCCC--------------CceEeehhhccCHHHHHHHHHhhcC
Confidence 2233456666543 6899999999999999999988764
No 97
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.2e-16 Score=165.67 Aligned_cols=160 Identities=20% Similarity=0.291 Sum_probs=107.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch--
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 901 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-- 901 (1415)
.+.|+|+|++|+|||||+++|++..+. .....++|.......+. +....++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE----------------YDGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE----------------ECCeeEEEEECCCCccccc
Confidence 456999999999999999999876532 22233333332211111 12345899999997543
Q ss_pred --------hhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 902 --------TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 902 --------~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
..++ ...+..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 2122 235678999999999999988888888888888889999999999996310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+..+...+... +. ....+++|++||++|.||..++..+..+
T Consensus 132 ---------~~~~~~~~~~~~-~~---------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LP---------FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-cc---------cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111122111 10 0123689999999999999999887653
No 98
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=9.2e-17 Score=169.20 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=97.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc-ccc---cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ-EGE---AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~-~ge---agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|+|||+.|+|||||+++|.+.... .+. ....|..+....+ .+....+.|||||||..|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~l~Dt~G~~~~~~ 65 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI----------------EVGNARLKFWDLGGQESLRS 65 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE----------------EECCEEEEEEECCCChhhHH
Confidence 899999999999999999753221 000 0001111111111 12234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|||||+.+.-. ......+..+. ..++|+||++||+|+...+ ..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~-------------- 125 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV-------------- 125 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH--------------
Confidence 99999999999999999976321 11222222222 2479999999999985311 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+...+.... . . .....++++++||++|.||.+++.+|.
T Consensus 126 -----~~~~~~~~~~~-~-~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -----EEIKEVFQDKA-E-E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -----HHHHHHhcccc-c-c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 01111111100 0 0 001347999999999999999998875
No 99
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.69 E-value=8.1e-17 Score=171.61 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=100.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|++++|||||+++|.+..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 45669999999999999999998764321 222223111100 01123589999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCCh-hHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~-QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|||+|+.+.-.. .....+..+ ...++|+|||+||+|+.... .
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------S--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------C---------------
Confidence 988899999999999999875211 112222222 22578999999999986210 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+....+. ...+++|++||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111112111111 1347999999999999999998875
No 100
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=1.5e-16 Score=167.89 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=102.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.|+|||||+++|++..+.......++.++....+.+.. ....++|||||||..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG--------------KRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHH
Confidence 4599999999999999999987665433222222222211222111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+++....+.... +..+. ..++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----~~~------------------ 127 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR----EVL------------------ 127 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----ccC------------------
Confidence 999999999999999988544333222 23332 2468999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+....... +..+++++||++|.||.+++.+|..
T Consensus 128 -~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 128 -FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred -HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 00111111111 2247899999999999999998875
No 101
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.68 E-value=1.4e-16 Score=165.66 Aligned_cols=147 Identities=26% Similarity=0.308 Sum_probs=102.3
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-----
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL----- 904 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l----- 904 (1415)
|+|++|+|||||+++|++..+..+...|+|.+.....+.+. ...+.||||||+..|..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 68999999999999999876555566666665543333222 235899999999887653
Q ss_pred -Hhhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 -RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 -r~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+...+ ..+|++|+|+|+.+. .+....+..+...++|+|+|+||+|+... ..+. .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~---------------~ 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIK---------------I 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccch---------------h
Confidence 44444 489999999999873 33344556667788999999999999631 0000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ ..+... ..++++++||.+|.|+..|+.+|..+
T Consensus 122 ~~----~~~~~~--------------~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 DL----DKLSEL--------------LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hH----HHHHHh--------------hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 01489999999999999999888764
No 102
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=2.5e-16 Score=164.76 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=108.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+......+++.+.....+.+... ...++||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK--------------TVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999998877666666665554433332211 01389999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHH-Hhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL-KMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~ll-k~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.++-+.+.... +..+ ... ++|+|+|+||+|+... .....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 99999999999999987544333333 2333 233 4899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.....+... ..++++++||.+|.||.+|+.+|...
T Consensus 126 --~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 --EEGEKKAKE--------------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred --HHHHHHHHH--------------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 001111110 12589999999999999999998753
No 103
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=6e-16 Score=190.68 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=114.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH---- 898 (1415)
+.+.|+|+|++++|||||+++|++..+. .....|+|.+.....+.+ .+..+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~----------------~~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL----------------GGKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE----------------CCEEEEEEECCCccccc
Confidence 4567999999999999999999987642 344566665543322222 2234789999994
Q ss_pred ------cchhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 899 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 899 ------e~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.|..++. ..+..+|++|||+|+.+++..+....+..+...++|+|||+||+|+... .....
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~---- 342 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYY---- 342 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHH----
Confidence 44555543 3568899999999999999999999998888889999999999999621 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+. ..+...+.. ...+|+++|||++|.||.+|+..|..++.
T Consensus 343 -------~~---~~i~~~l~~--------------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 343 -------LE---REIDRELAQ--------------VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -------HH---HHHHHhccc--------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 111111111 12368999999999999999999887664
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.68 E-value=3.2e-16 Score=164.18 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=100.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|.+++|||||+++|++..+.....+.+...+ ...+.+. .....+.|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID--------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC--------------CEEEEEEEEECCCCcchhHHH
Confidence 3599999999999999999987655332222211110 1111110 111248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|+.+....+... ++..+ ...++|+|||+||+|+...+. ..
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK----VS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce----ec-----------------
Confidence 99999999999999998743222211 12222 224789999999999863110 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||++|.||.+++..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 24899999999999999999987654
No 105
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=3.2e-16 Score=164.25 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=106.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......++.......+.... ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998776554444444333322222211 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-H---HHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.++...+....| . .+...++|++||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986554443333 2 233457899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... + ++++.+||++|.||.+++.+++.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111112111 1 58999999999999999998864
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=5.2e-16 Score=163.90 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=104.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 489999999999999999998776543333332222111111111 012478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH--HHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~--llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..++.||++|+|+|+.++...+....|. ++.. .++|+|||+||+|+... ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~-------------- 128 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVS-------------- 128 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccC--------------
Confidence 9999999999999998754322222221 1222 26899999999999620 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+... +.++++++||.+|.|+..++.+|...+.
T Consensus 129 ----~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 129 ----TKKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ----HHHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 2368999999999999999999876543
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.68 E-value=3.7e-16 Score=168.61 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
+..|+|+|+.|+|||||+++|.+..+... ...++..+....+.+. ......|.||||||++.|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 45699999999999999999987654321 1111111111111100 111235899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHH-----HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~-----E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..||++|||+|+.+.-..... +++......++|+|||+||+|+...+ +
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~---------------- 126 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------S---------------- 126 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------C----------------
Confidence 99889999999999999874222111 11122233578999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+....+. ....++++++||++|.||.+|+.+|+..+.
T Consensus 127 ---~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 127 ---VSEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---HHHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 00111111000010 012367999999999999999999886654
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=3.7e-16 Score=164.89 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=95.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCC-CCEEEEeCCCCcc-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES----- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~-~~l~iIDTPGHe~----- 900 (1415)
.|+|||++|+|||||+++|.+.....+...+.|.......+. +.. ..++||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~----------------~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR----------------VDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE----------------cCCCCeEEEEecCcccCccccc
Confidence 389999999999999999987654333323333222111111 111 2699999999742
Q ss_pred --hhhHHhhccCcccceEEEEeccCC-CChhHHHH-HHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~-l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.....+.+..||++|+|+|+.++ -..+.... +..+.. .++|+|||+||+|+... ..+
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~------- 132 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EEL------- 132 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhh-------
Confidence 222333455679999999999986 23333332 233332 36899999999998631 110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+..+.... ..++++++||++|.||.+|+.+|..+
T Consensus 133 ------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 ------------FELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ------------HHHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 01111111110 13579999999999999999988754
No 109
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=2.9e-16 Score=164.56 Aligned_cols=151 Identities=27% Similarity=0.272 Sum_probs=98.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+++|+...+... .+ .++..... ..+....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~----t~~~~~~~--------------~~~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IP----TIGFNVET--------------VTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CC----ccCcCeEE--------------EEECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976544321 11 11111100 0112235899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..||++|||+|+.+..... ....|. ++.. .++|+|||+||+|+...+ .
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~------------------- 117 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------S------------------- 117 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------C-------------------
Confidence 999999999999988732211 223332 3332 368999999999986311 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+ ++.. + ....+++++|||++|.||.+|+.+|++
T Consensus 118 ~~~i~~~~---~~~~---~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKL---GLSE---L----KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHh---Cccc---c----CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 01111111 1110 0 012358999999999999999998863
No 110
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=5e-16 Score=163.94 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=104.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|+.|+|||||+++|....+..+...+++.+.....+.+.. ....+.|||||||..|..++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~ 73 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG--------------EKIKLQIWDTAGQERFRSIT 73 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHH
Confidence 5599999999999999999987666544333333322111111111 00247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|+|+|+.++...+....| ..+...++|+|+++||+|+... ..+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~---------------- 131 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVS---------------- 131 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccC----------------
Confidence 9999999999999999875443332222 3333346899999999998531 1110
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+... ..++++++||++|.|+.+++.+|...
T Consensus 132 --~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 132 --QQRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred --HHHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0111112111 12579999999999999999998754
No 111
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.67 E-value=5e-16 Score=161.80 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=99.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|.+..+.....+.+.... ...+.... ....+.||||||++.|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHHH
Confidence 489999999999999999998765433222221110 11111110 012378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|+|+|+.+....+... ++..+. ..++|+|||+||+|+... ...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~------------------ 124 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS------------------ 124 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec------------------
Confidence 9999999999999998743222222 122222 247899999999998621 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+....... .++++++||++|.||.+++.+|+..
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 -SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred -HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111111 2489999999999999999988753
No 112
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=8.2e-16 Score=160.89 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||++++|||||+++|++..+.......++.++....+.+.. ....|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG--------------KRVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 489999999999999999998876554444444443333222211 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..||++|||+|+.+....+....| ..+.. .++|+|||+||+|+...+. .+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~------------------ 125 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSR------------------ 125 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCH------------------
Confidence 999999999999999885444333322 23222 4689999999999863110 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+....... .++++++||.+|.|+.+++.+|...+
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 126 -EEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -HHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 25799999999999999999988654
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=4.2e-16 Score=163.01 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=98.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+++|++...... .++..+|.....+ .+....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~--------------~~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESF--------------EKGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEE--------------EECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 1222222111100 011235899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHHHH-H-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|+.++.... ....+..+ . ..++|+|||+||+|+... ..
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 121 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LT----------------- 121 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CC-----------------
Confidence 999999999999998854321 12222222 1 246899999999998521 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ ++.. . ....++++++||++|.||.+++.+|.
T Consensus 122 --~~~~~~~l---~~~~--~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 122 --AVKITQLL---GLEN--I-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred --HHHHHHHh---CCcc--c-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 00111111 1110 0 01235799999999999999999875
No 114
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=4.1e-16 Score=192.15 Aligned_cols=152 Identities=24% Similarity=0.320 Sum_probs=111.9
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|+|++|+|||||+++|++..+. .....|+|.+.-...+.+ ....+.||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----------------NGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----------------CCcEEEEEeCCCcCCcch
Confidence 367999999999999999999987543 345667776643333222 223589999999763
Q ss_pred -----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 901 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 901 -----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|...+..++..||++|||||+.+|++.....++.+++..++|+|+|+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-------~~----------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-------EA----------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-------ch-----------
Confidence 4444556788899999999999999888888888888889999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. ...+...|+. .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~~--------------~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGLG--------------EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCCC--------------CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 0112222321 246999999999999999987654
No 115
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=5e-16 Score=162.61 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=102.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.....++++.++....+.... ......++||||||++.|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ------------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC------------CCCEEEEEEeeCCchHHHHHhHH
Confidence 489999999999999999998766544444443333211111110 00112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH-HHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..++.+|++|||+|+.+....+....|. .+. ..++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 9999999999999998743333333322 222 237899999999998631 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+ ..+... ..++++++||++|.|+.+|+.+|..
T Consensus 127 ~~~-~~~~~~--------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEA-EALAKR--------------LQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHH-HHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 001 111111 0148999999999999999988764
No 116
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=3.3e-16 Score=190.88 Aligned_cols=150 Identities=25% Similarity=0.328 Sum_probs=113.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe------ 899 (1415)
+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+. ...++||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 4899999999999999999987643 3345667765543333322 2359999999973
Q ss_pred --chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 900 --SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 900 --~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.|...+..++..+|++|||||+..|+.+...+++.+++..++|+|+|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~-----~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED-----A--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc-----c---------------
Confidence 345556678889999999999999999999999999999999999999999986310 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
....+...|+ .+++++||.+|.||.+|+..+...+
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 0111222222 2689999999999999999887544
No 117
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.7e-15 Score=165.90 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=104.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+......++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 489999999999999999998766543333333222221221110 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH-------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..+..+|++|||+|+.+...-+....| ..+. ..++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~--------------- 129 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AKD--------------- 129 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----ccC---------------
Confidence 999999999999999873222222211 1221 2468999999999995210 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
...+.......+ .++++++||++|.||.+++.+|+..+..
T Consensus 130 ----~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 130 ----GEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ----HHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 011111222221 2479999999999999999999876543
No 118
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=8.2e-16 Score=161.11 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=103.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.+++...+.... ....++||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN--------------KEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC--------------eEEEEEEEECCccHHHHHHHH
Confidence 489999999999999999998776554444444333322222211 112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh--------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
..+..+|++|||+|+.+....+....| ..+.. .+.|+|+|+||+|+.... ...
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999874332222222 22211 358999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
........... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00011111111 1579999999999999999998754
No 119
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=1.1e-15 Score=169.98 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=116.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.. ... .+|..+.... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999877642 111 2222211110 1112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhH-HHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPI-VKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~-~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+.-....+. .|..+.. .++|+|||.||+|+...|....+..- ...+..... ...
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~---r~v-- 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQ---RQV-- 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccccccccccc---ccC--
Confidence 9999999999999998843322222 2222222 35899999999999753321100000 000000000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEE
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1052 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~V 1052 (1415)
..........+.+ ....+|.+-.....+++|+|||++|.||.+++..++..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~-~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRIN-KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhC-ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 0001111111111 001122222223347899999999999999999998877666665544433334443
No 120
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=6.8e-16 Score=162.10 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=100.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|.+..+.....++++ +.....+... .....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--------------~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEID--------------GEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEEC--------------CEEEEEEEEECCCcccchHHHH
Confidence 489999999999999999997765443322221 1100100000 0112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+.+.-.......| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999873322222221 112 22368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... ..++++++||++|.||.+|+.+|+..+
T Consensus 125 --~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 125 --TEEGKELARQ--------------WGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHH--------------cCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 0001111111 015899999999999999999987654
No 121
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=7.5e-16 Score=168.18 Aligned_cols=158 Identities=26% Similarity=0.339 Sum_probs=104.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH----- 898 (1415)
+.+.|+|+|++|+|||||+++|++..+..+...|+|.+...+. ...++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--------------------~~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--------------------WGDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--------------------ecceEEEeCCccccccc
Confidence 4567999999999999999999987765555556554422110 114899999995
Q ss_pred ------cchhhHHh----hccCcccceEEEEeccCC-----------CChhHHHHHHHHHhcCCceEEEEEecccccCCc
Q 000570 899 ------ESFTNLRS----RGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 957 (1415)
Q Consensus 899 ------e~F~~lr~----rgl~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~ 957 (1415)
+.|..++. +++..++++|+|+|+... ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 33433322 245668999999998642 2345667778887889999999999998521
Q ss_pred cCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. . ..+..+...+ ++.. .|. .+ ..++|+|||++| ||.+|+.+|...+
T Consensus 146 -----~-~---------------~~~~~~~~~~---~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 146 -----R-D---------------EVLDEIAERL---GLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----H-H---------------HHHHHHHHHh---cCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0 0 0011111111 2110 010 01 247999999999 9999999987654
No 122
>PTZ00369 Ras-like protein; Provisional
Probab=99.66 E-value=8.8e-16 Score=166.47 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.+.|+|+|+.|+|||||+.++.+..+.......+ +..+. ....+ +.....+.||||||+..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~~~~-------~~~~~----~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----EDSYR-------KQCVI----DEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hhEEE-------EEEEE----CCEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876543222221 11110 00000 011124889999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..+|++|||+|+.+...-.... ++..+. ..++|+|||+||+|+...+ .+.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------~i~-------------- 129 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER------QVS-------------- 129 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------ccC--------------
Confidence 999999999999999998743322222 222222 2378999999999985311 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1039 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~ 1039 (1415)
........... .++++++||++|.||.+++.+|+..+...+.
T Consensus 130 ---~~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 130 ---TGEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ---HHHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00000011111 1589999999999999999999877655443
No 123
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=9.1e-16 Score=160.82 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 3589999999999999999998776542222211111111111111 11248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+.-. .+...++..+.. .++|+||++||+|+.... ..+
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~------------------ 125 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR----QVS------------------ 125 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC----cCC------------------
Confidence 888999999999999986422 122233333333 358999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++++||++|.|+.+++.+|+..+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 126 -TEEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 00111111111 15799999999999999999987653
No 124
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=1.1e-15 Score=162.19 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=103.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|++..+.......++.++....+.... ....+.||||||+..|..++.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 71 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG--------------KQIKLQIWDTAGQESFRSITR 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 599999999999999999998766544333333332222221111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
+.+..+|++|||+|+++...-+.... +..++. .++|+|||+||+|+... ...+.
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~------------------ 129 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVSY------------------ 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCCH------------------
Confidence 99999999999999986433333222 223333 36899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+...+... .++++++||++|.||.+++.++...+
T Consensus 130 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 130 -EEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24799999999999999998887543
No 125
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=1.7e-15 Score=157.36 Aligned_cols=157 Identities=27% Similarity=0.370 Sum_probs=105.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccccccc-CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~gea-gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+..+|+|+|++|+|||||+++|++..+..... ...|.......+ ......+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY----------------TDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE----------------EcCCeEEEEEECCCCCcch
Confidence 45679999999999999999999765432211 111111000000 0112358999999976543
Q ss_pred --------hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 903 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 903 --------~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
......+..+|++++|+|+.+.........+..+...+.|++|++||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~------------ 127 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------K------------ 127 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------H------------
Confidence 23445678899999999999986666777777787788999999999998621 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+..+...+... ...++++++|+++|.|+.+|+..|.+.
T Consensus 128 ------~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 128 ------EDLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ------HHHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 0111222222221 123589999999999999999988653
No 126
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=1.9e-15 Score=178.11 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=121.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC-----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 897 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----- 897 (1415)
.+..|+|+|.+++|||||+|+|++.. +..+...|+|.+.-...+. +++..+.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------RDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------ECCeEEEEEECCCCCccc
Confidence 34559999999999999999999764 4456667788775444443 3345699999999
Q ss_pred -----CcchhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 898 -----HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 898 -----He~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
++.|+.++. ..+..+|+++||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 455665554 56778999999999999999999999999999999999999999997420 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
....+.. .+...|.- -.+.|+|++||++|.||..|+..+.....
T Consensus 308 ---~~~~~k~---~i~~~l~~--------------l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 ---TMEEFKK---KLRRKLPF--------------LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ---HHHHHHH---HHHHHhcc--------------ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 1111211 12222211 24569999999999999999998876543
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=7.5e-16 Score=157.64 Aligned_cols=151 Identities=22% Similarity=0.271 Sum_probs=99.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|++|+|||||+++|.+..+......++|.++....+..... ...+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK--------------TYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE--------------EEEEEEEECCCcccchHHH
Confidence 45999999999999999999988765555566666655443332210 0248899999999997766
Q ss_pred hhccCcccceEEEEe-------ccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 906 SRGSGLCDIAILVVD-------IMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 906 ~rgl~~aDiaILVVD-------a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
......++.+|+++| +.++...+....+.++.. ++|+||++||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 555555555555544 444444444444444443 8899999999999621 010
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 0111112111 22479999999999999998876
No 128
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=6.1e-16 Score=161.82 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=98.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|.+|+|||||+++|.+..+... ..++...+ ..+.. .....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~---------------~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL---------------EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe---------------CCceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765421 11111111 00000 01135999999999999999988
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHH-HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+..... ....+. +++ ..++|+|||+||+|+...+ .
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 899999999999998753211 111222 222 2578999999999985211 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+....+. ....++++++||++|.||.+++.+|..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 01111111111111 012468999999999999999998864
No 129
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=1e-15 Score=162.06 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=103.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|.+++|||||+++|.+..+......+++.+.....+.+.. ....|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG--------------KKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4599999999999999999998776543333332222111111111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|||+|+.++..-+.... +..+.. .++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~----~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR----VVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----CCC------------------
Confidence 989999999999999987433222222 222222 468999999999996310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||.+|.||.+++.+|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999887643
No 130
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=1.6e-15 Score=166.77 Aligned_cols=157 Identities=21% Similarity=0.228 Sum_probs=106.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.++....+......+++.++....+.+.. ....|.||||||++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~--------------~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRG--------------KKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCchhhHHHHH
Confidence 389999999999999999998777654444443333222222211 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+....| ..+.. .++|+|||.||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 999999999999999984443333322 33332 358999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... + ..++++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0001112111 0 125799999999999999999987644
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=8.5e-16 Score=158.58 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=101.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|.+..+......++...+. .+. +....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~----------------~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVT----------------KGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEE----------------ECCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999987654333222221111 000 11134899999999999999999
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+... .+....+..+. ..++|++|++||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999976322 22223333332 247899999999998521 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...+ ++.. .....++++++||++|.||..++.+|..
T Consensus 120 -~~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DELIEQM---NLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHHHHHh---Cccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 0111111 1110 0123478999999999999999998864
No 132
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=1.5e-15 Score=161.16 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|+...+.......+..++....+... .....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN--------------RGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCCChhhccccH
Confidence 48999999999999999998665543332222222221111111 1112489999999999999988
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..+..+|++|||+|+.++..-+....| ..+... ++|+|||+||+|+... ...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-----~~~-------------------- 122 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-----KVK-------------------- 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-----cCC--------------------
Confidence 889999999999999875443333322 333222 6999999999998510 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... .+... ..++++++||++|.||.+++.+|+..+
T Consensus 123 ~~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 123 AKQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 0000 11111 236899999999999999999987544
No 133
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=1.6e-15 Score=160.04 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=102.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|.+..+......+++.++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG--------------KTIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEECCCcHhHHHHHH
Confidence 489999999999999999998766544334433322211111111 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-.. ..++..+.. .++|+||++||+|+.... ....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~------------------ 127 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR----VVDY------------------ 127 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc----CCCH------------------
Confidence 99999999999999987322111 122232322 358999999999985310 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+. .+... ..++++++||++|.||.+++..|...+
T Consensus 128 -~~~~-~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 128 -SEAQ-EFADE--------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -HHHH-HHHHH--------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 0011 11110 125899999999999999999887644
No 134
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=1.5e-15 Score=158.90 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=99.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|.+|+|||||+++|....+.....+.+...+ ...+... .....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVD--------------GQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEEC--------------CEEEEEEEEECCCccccchHH
Confidence 4599999999999999999997655432222211000 0001000 011247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...++.+|++|||+|+.+....... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 9999999999999999873222211 12222322 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.. .++ ++++++||++|.||.+|+.+|+..
T Consensus 126 ---~~~~~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 ---REEGQALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ---HHHHHHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 000111111 011 689999999999999999988753
No 135
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=9.9e-16 Score=160.05 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=99.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+... +..++.....+ .+....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETV--------------EYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEE--------------EECCEEEEEEECCCChhhHHHHHH
Confidence 89999999999999999997763211 11111111000 011235999999999999999998
Q ss_pred ccCcccceEEEEeccCCC-ChhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|+|+|+..+- .......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 899999999999998742 12222333222 2357899999999998631 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111211100 123579999999999999999988753
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=1.4e-15 Score=160.82 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=100.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|++..+.......+ +.++... + ........|.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----~~~~~~~---------~--~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQV---------I--SCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc----hheEEEE---------E--EECCEEEEEEEEECCCCCcchHHHH
Confidence 48999999999999999999876643322221 1111100 0 0001123489999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|||+|+.+...... ..++..++. .++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------- 128 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------- 128 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH-------------
Confidence 88999999999999988543322 223333332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
... ..+.. . ..++++++||++|.||.+++.+|+.+
T Consensus 129 ----~~~-~~~~~-~-------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 ----NEG-AACAT-E-------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ----HHH-HHHHH-H-------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 000 00110 0 12578999999999999999998753
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.64 E-value=1.3e-15 Score=162.80 Aligned_cols=152 Identities=26% Similarity=0.263 Sum_probs=99.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|....+.. . ...++..+... .+....+.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-T----SPTIGSNVEEI--------------VYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEE--------------EECCeEEEEEECCCCHHHHHHH
Confidence 359999999999999999998655432 1 12222211110 1112359999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChh-HHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQ-TIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..||++|||+|+.+..... ....| .++.. .++|+||++||+|+...+ +.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~---------------- 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TP---------------- 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CH----------------
Confidence 99999999999999998742211 12222 23322 358999999999985210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+...+....+. ...++++++||++|.||.+++.+|.
T Consensus 135 ---~~i~~~l~~~~~~----------~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 135 ---AEISESLGLTSIR----------DHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ---HHHHHHhCccccc----------CCceEEEecccCCCCCHHHHHHHHh
Confidence 1111122110000 1236899999999999999999885
No 138
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=1.7e-15 Score=158.61 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=100.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.+.....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999997765432222222111111111110 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 899999999999999874433333222 222 2356899999999999621 1000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...... ..++++++||++|.||.+++..++.
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHH
Confidence 011111111 1258999999999999999988765
No 139
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=1.2e-15 Score=186.30 Aligned_cols=149 Identities=27% Similarity=0.339 Sum_probs=110.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+ .+..+.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~----------------~~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW----------------LGREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE----------------CCcEEEEEECCCCCCcchh
Confidence 67999999999999999999987642 344556665543333222 224599999999987
Q ss_pred h----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 901 F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 901 F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
| ......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+...+
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-------------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-------------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------------------
Confidence 2 3334556788999999999999999988888899999999999999999974200
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.....+...|+ ..++++||.+|.||.+|+..|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00111222221 14789999999999999988865
No 140
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=5.3e-15 Score=159.41 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=104.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+.......+..++... +.... .....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 489999999999999999998766543333332222111 10000 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+++....+... ++..+. ..++|+|||+||+|+..... ... .+.
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~---~v~------------- 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN---LDR---KVT------------- 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc---ccC---CcC-------------
Confidence 9999999999999998744333322 222222 23689999999999853100 000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
...........+ ..++|++||++|.||.+++..|+..+...
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 001111111111 23789999999999999999988766443
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=2.6e-15 Score=158.70 Aligned_cols=155 Identities=20% Similarity=0.182 Sum_probs=100.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|.+..+.......+..++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999987765433222222222111111110 112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++...-+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------~~~~----------------- 126 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ------RDVT----------------- 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCcC-----------------
Confidence 999999999999999874332322222 2222 245799999999999631 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...... ..++++++||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 YEEAKQFADE---------------NGLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999887653
No 142
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.63 E-value=1.3e-15 Score=164.52 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=103.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+.+.|+|+|+.|+|||||+++|.+..+.. ... |.......+. +....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~--T~~~~~~~i~----------------~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP--TLHPTSEELT----------------IGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccCcceEEEE----------------ECCEEEEEEECCCCHHHH
Confidence 356779999999999999999998765421 111 1111111111 112348899999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..+|++|||+|+.+.-. ......+..+. ..++|+||++||+|+.. ....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCH------------
Confidence 888888899999999999976321 11222332222 35689999999999852 1000
Q ss_pred HHHHHHHHHHHHHHHcCCch-hhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNT-ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~-e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+....+.. ............++++++||++|+||.+++.+|.++
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11111221110000 000000011234689999999999999999998764
No 143
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=3.5e-15 Score=161.65 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=104.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc--cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
+.|.|+|+|++|+|||||+++|++..+ ......|.|+.+..+.+ ...|.||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 345599999999999999999997542 12223344444322211 1359999999963
Q ss_pred --------chhhHHhhcc---CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 900 --------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 900 --------~F~~lr~rgl---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.|..+....+ ..++++++|+|+..+....+..++.++...++|+++++||+|+..++ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~~---- 153 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------ER---- 153 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------HH----
Confidence 3444444333 34578889999998888877777778888899999999999996321 00
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+...+... .++++|+||++|.|+.+++..|..++
T Consensus 154 -----------~~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 154 -----------KKQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -----------HHHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 00011111112111 25889999999999999999887654
No 144
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=2.9e-15 Score=158.68 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=100.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......++.+.....+.+.. ....|.||||||++.|..++.
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~ 72 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLRT 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhHH
Confidence 499999999999999999997766543322222221111111110 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH-H------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..+..+|++|||+|+++....+....| ..+ . ..++|+|||+||+|+.. +...
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~--------------- 132 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-----RQVS--------------- 132 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-----cccC---------------
Confidence 999999999999999875433333222 111 1 13589999999999851 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... +.++++++||++|.||.+++..++.
T Consensus 133 ----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 ----TEEAQAWCREN--------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred ----HHHHHHHHHHC--------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 01111111111 1247999999999999999998864
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.63 E-value=1.5e-15 Score=161.67 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.+.|+|+|+.++|||||+.+|....+.. ...+ +|..+.... +....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t----~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPT----VGFNVETVT--------------YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCC----cccceEEEE--------------ECCEEEEEEECCCCHHHHHH
Confidence 3459999999999999999997654321 1111 121111000 11235999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...++.||++|||+|+.+... ......|. ++.. .++|+|||+||+|+...+ +
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 9888999999999999987321 11222332 3322 358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ ++.. .....++++++||++|.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1110 011335899999999999999998875
No 146
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=2.6e-15 Score=162.93 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=100.8
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..|+|||||+++|+...+.....+.+ +..+.. ...+. .....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~----~~~~~~-------~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTI----EDSYRK-------QVVVD----GQPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch----HhhEEE-------EEEEC----CEEEEEEEEECCCchhhHHHHHH
Confidence 8999999999999999999766543222221 111100 00000 00124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHH-HHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+++.+|++|||+|+.+........ ++..+.. .++|+|||+||+|+.... .+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~--------------- 125 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVS--------------- 125 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccC---------------
Confidence 999999999999998743322222 2233322 468999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.... ..+... + .+++|++||++|.||.+++.+|+..+.
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 126 --TEEG-AALARR------------L--GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred --HHHH-HHHHHH------------h--CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000 111110 1 147999999999999999999986554
No 147
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.63 E-value=2.5e-15 Score=155.47 Aligned_cols=144 Identities=26% Similarity=0.350 Sum_probs=101.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
.|+++|++|+|||||+++|++.... .+...|+|+.+....+.+ ....++||||||+..+...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI----------------GGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe----------------CCEEEEEEECCCcCCCcchH
Confidence 5899999999999999999976542 233445555433222221 1235899999998776432
Q ss_pred -------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 905 -------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 905 -------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
....+..+|++|+|+|+.+.........+.. ..+.|+|+|+||+|+...+ .
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~------~-------------- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS------E-------------- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc------c--------------
Confidence 3356678999999999998655554444433 4678999999999996311 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
. +. .....++|++||.+|.|+..|+.+|..+
T Consensus 125 --------~---~~--------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 125 --------L---LS--------------LLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --------c---cc--------------ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 0 00 0124689999999999999999988754
No 148
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=2.3e-15 Score=158.48 Aligned_cols=156 Identities=19% Similarity=0.096 Sum_probs=100.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..|+|||||+++|+...+.....+++...+ ...+... .....+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD--------------GQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC--------------CEEEEEEEEECCCcccchhHH
Confidence 3589999999999999999986654332222221111 0011111 011247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|..+....+.. .++..+. ..++|+|||+||+|+... ..+. .
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------~ 126 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------K 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc--------------H
Confidence 9999999999999998764322222 1222222 246899999999999631 0000 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...+... ..++++++||++|.||.+++.+|+..+
T Consensus 127 ---~~-~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 127 ---EQ-GQNLARQ--------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ---HH-HHHHHHH--------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00 0111110 015899999999999999999987543
No 149
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=3.1e-15 Score=159.97 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|+|..++|||||+.++....+.......+...+ ...+.+.. ....|+||||||...|..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDN--------------EPALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 34699999999999999999997766432222221111 00111110 0124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH-HHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+..++..+|++|||+|+.+....++...| ..+. ..++|+|||+||+|+...+ ..+.
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~~--------------- 127 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVTT--------------- 127 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccCH---------------
Confidence 99999999999999999986655554322 2222 2468999999999985211 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
... ..+... ..+++++|||++|.||.++|.+|+..+
T Consensus 128 ----~~~-~~~a~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 128 ----EEG-RNLARE--------------FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ----HHH-HHHHHH--------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 011110 125899999999999999999987543
No 150
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=2.5e-15 Score=160.55 Aligned_cols=164 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+++|.+..+......+++.++....+.+..-. ............+.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSG----PGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcc----ccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 458999999999999999998876654444444333322222211100 0000000011348999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
...++.+|++|||+|+.+ +.+...+ ..+.. .+.|+|||+||+|+.... ...
T Consensus 81 ~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~v~-------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR----QVS-------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----ccC--------------
Confidence 999999999999999987 3433332 22322 368999999999986210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+ ..+... ..++++++||++|.||.+++..|+..+
T Consensus 140 -----~~~~-~~~~~~--------------~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 -----EEQA-KALADK--------------YGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -----HHHH-HHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011 111111 025899999999999999999987644
No 151
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=3e-15 Score=159.07 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
|...|+|+|+.|+|||||+++|+...+......+++.++....+.+.. ....+.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 345699999999999999999987665443333332222111111111 11248999999999997
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHH-HHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..+|++|||+|+.+....+....|. .+.. .++|+|||+||+|+.... . +
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~--~------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI----Q--V------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc----C--C-------------
Confidence 57788889999999999999866655554443 3333 358999999999985210 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC---CCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t---GeGI~dLl~~L~~l 1033 (1415)
.......+... ..++++++||++ +.||.+++..|+..
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 00111122211 126899999999 77888888777643
No 152
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=2e-15 Score=165.28 Aligned_cols=149 Identities=24% Similarity=0.293 Sum_probs=95.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
++|+|+|++|+|||||+++|++..+......+.|.......+.+. ....++||||||+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~ 106 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPHQ 106 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCHH
Confidence 569999999999999999999876433222222222111111100 112599999999833
Q ss_pred ----hhhHHhhccCcccceEEEEeccCCCChhHH-HHHHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|.... ..+..+|++|+|+|+.++...... .+..++. ..++|+|||+||+|+...+ .
T Consensus 107 ~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------~--------- 170 (204)
T cd01878 107 LVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE------E--------- 170 (204)
T ss_pred HHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH------H---------
Confidence 22221 235679999999999987654433 2233333 3468999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+. ..+. ...++++++||++|.||.+++.+|...
T Consensus 171 ----------~~---~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 ----------LE---ERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ----------HH---HHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 00 0010 123589999999999999999988653
No 153
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=1.2e-15 Score=161.11 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=93.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC----cchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH----e~F~ 902 (1415)
.|+|+|++++|||||+++|.+..... ...+.+.+ ... .+|||||. ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-------~~~~~v~~------------------~~~--~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-------RKTQAVEF------------------NDK--GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-------ccceEEEE------------------CCC--CcccCCccccCCHHHH
Confidence 39999999999999999987543111 01111111 111 26999996 3344
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..++..+|++|||+|+..+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 444456788999999999998866554433332 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
..+...+...++ ..|+|+|||++|+||.+|+..|..++..
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 112222333322 2599999999999999999998776544
No 154
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.62 E-value=3.6e-15 Score=157.60 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=101.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.++....+... .....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN--------------DKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCChHHHHHHHH
Confidence 48999999999999999999876643322222211111111000 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-+. ..++..+.. .++|+|||+||+|+.... ....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~----~~~~------------------ 126 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER----VVSS------------------ 126 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc----ccCH------------------
Confidence 99999999999999876322222 222333433 357999999999996310 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .++++++||++|.||.+|+.+|+..+
T Consensus 127 -~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 127 -ERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0011111111 14799999999999999999987643
No 155
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=4.1e-15 Score=165.53 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=105.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.....|+|+|..|+|||||+.+++...+......++...+....+.... ....+.||||||++.|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 5556799999999999999999987665433322222222111111110 11258999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.++...++.+|++|||+|+++....+....| ..++ ..++|+|||+||+|+... ...
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-------~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-------cCC--------------
Confidence 9999999999999999999985444433333 2332 246899999999998410 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. ..+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ~---~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 A---KQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred H---HHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0 001 11111 125889999999999999999987544
No 156
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=6.6e-15 Score=189.63 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=114.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc----
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 899 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe---- 899 (1415)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+. +.+..++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~----------------~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVE----------------IDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEE----------------ECCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 34455666554332222 223458899999953
Q ss_pred ------chhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 900 ------SFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 900 ------~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
.|..++. .++..||++|||||+.+|++.|+...+..+...++|+|||+||+|+... ....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~------ 580 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQ------ 580 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHH------
Confidence 3444443 4578899999999999999999999998888889999999999999621 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+...+... +. ....++++++||++|.||.+|+..+...+..
T Consensus 581 ------------~~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 581 ------------RLERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ------------HHHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 011111110 10 1134689999999999999999998876643
No 157
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.62 E-value=2.7e-15 Score=158.24 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=97.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+.+|....+.. ... ++|..... + .+....+.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~p----t~g~~~~~----------~----~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVET----------V----EYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCC----CCCcceEE----------E----EECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997554432 111 12211100 0 01123489999999999999999
Q ss_pred hccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.||++|||+|+.+... .+..+.|. ++.. .++|+||++||+|+...+ .
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~------------------ 118 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------S------------------ 118 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------C------------------
Confidence 99999999999999976321 11222232 2222 358999999999985210 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ +++. . ....+.++++||++|.||.+++.+|.
T Consensus 119 -~~~i~~~~---~~~~---~----~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 119 -AAEVTDKL---GLHS---L----RNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -HHHHHHHh---Cccc---c----CCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 01111122 2210 0 12345789999999999999998875
No 158
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=4.3e-15 Score=161.40 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|..|+|||||+++|....+..+. ..+++.++....+.... ....++||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG--------------VKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC--------------EEEEEEEEeCCCcHHHHHhh
Confidence 4899999999999999999987664322 22222222111111111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+....+. ..++..+.. .++|+|||+||+|+... +.-.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~----~~~~------------------ 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE----RVVK------------------ 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc----cccC------------------
Confidence 889999999999999987433222 222333332 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
... ...+... + .++++++||++|.||.+|+.+|...+..
T Consensus 126 -~~~-~~~l~~~------------~--~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -RED-GERLAKE------------Y--GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHH-HHHHHHH------------c--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 000 0111110 1 2589999999999999999999876543
No 159
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=3.1e-15 Score=192.62 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=112.3
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|+|++|+|||||+++|++.... .....|+|.+.-...+. +....+.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~----------------~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE----------------WAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE----------------ECCEEEEEEeCCCcCCCCc
Confidence 356999999999999999999986542 34456777654322222 2234589999999763
Q ss_pred -----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 901 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 901 -----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|......++..||++|||||+.+|+.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4455566788999999999999999999988999999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.....+...|+. .+++|||++|.||.+|+.+|+..+
T Consensus 400 ---------~~~~~~~~lg~~--------------~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 400 ---------YDAAEFWKLGLG--------------EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ---------hhHHHHHHcCCC--------------CeEEEECCCCCCchHHHHHHHHhc
Confidence 001112222221 347999999999999999987654
No 160
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=3.1e-15 Score=161.66 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=102.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|..|+|||||+++|.+..+... .+ |.+.....+. +....+.|+||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELA----------------IGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 446799999999999999999987654321 11 1111111111 1223589999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCC-hhHHHHHHHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|+|||+.+.-. ......+..+ . ..++|+||++||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 99999999999999999977321 1222223222 2 2578999999999985311 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...| ++.....-........+.++++||++|.|+.+++.+|..
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 01122222 111000000000113567999999999999999999864
No 161
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=4.9e-15 Score=158.96 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=103.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+.....+++...+.. .+.... ....|.||||||++.|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 48999999999999999999877654333333222110 011100 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+... ++..++. .++|+|||+||+|+.. ...+...+.....+. .
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~~---v--- 135 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQKP---I--- 135 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCCC---c---
Confidence 8999999999999998854333332 2233332 3689999999999852 111111111100000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.......+... .+.++++++||++|.||.+++..++.
T Consensus 136 ~~~~~~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 136 TPETGEKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CHHHHHHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 00000111110 12368999999999999999988775
No 162
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.62 E-value=4e-15 Score=156.64 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=102.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|.+++|||||+++|.+..+.......++.++....+.... ....+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG--------------KTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHHHH
Confidence 3599999999999999999998776543333333332222221111 01248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..|+++|||+|+.+....+... ++..++. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 99999999999999998633222222 2222322 35899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...... ..++++++||++|.||..|+..|+..
T Consensus 128 -~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEK---------------NGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999988753
No 163
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=4.8e-15 Score=160.03 Aligned_cols=155 Identities=23% Similarity=0.210 Sum_probs=100.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+|....+.. ..+++ |..+... .+....++||||||+..|..++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~----g~~~~~~--------------~~~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----GFNVETV--------------EYKNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCcc-ccCCc----ceeEEEE--------------EECCEEEEEEECCCCHHHHHHH
Confidence 459999999999999999997654431 11222 2111110 1122359999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChh-HHHHHHHH-Hh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...++.+|++|||+|+.+...-. ....|..+ .. .++|+|||+||+|+.... +
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------~----------------- 135 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------N----------------- 135 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------C-----------------
Confidence 99999999999999998732211 12222222 21 368999999999985310 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+...| |+.. + -...+.++++||++|+||.+++.+|...+
T Consensus 136 --~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 --AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred --HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01122222 2210 0 01235688999999999999999986543
No 164
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.61 E-value=1e-15 Score=141.70 Aligned_cols=80 Identities=48% Similarity=0.747 Sum_probs=69.4
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1362 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~ 1362 (1415)
+.||.|+|+|.|+||.++ +|+| .|+.|+|++|+|| +| ..+|+|.||++++++|++|++|++|||+|+|.
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G--~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~---- 70 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DG--RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGP---- 70 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CS--SCEEEEEEEEETTEEESEEETT-EEEEEEET-----
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CC--EEEEEEEEeEECCcCccccCCCCEEEEEEeCC----
Confidence 469999999999999999 9999 9999999999999 66 45999999999999999999999999999985
Q ss_pred ccccccccccCCCeEEE
Q 000570 1363 QQKMFGRHFDIEDELVS 1379 (1415)
Q Consensus 1363 ~~~~~gr~f~~~d~l~s 1379 (1415)
| |+++||+||.
T Consensus 71 ---~---~i~eGDiLyV 81 (81)
T PF14578_consen 71 ---T---QIKEGDILYV 81 (81)
T ss_dssp -------TB-TT-EEEE
T ss_pred ---c---cCCCCCEEeC
Confidence 3 9999999995
No 165
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.61 E-value=4.1e-15 Score=153.26 Aligned_cols=153 Identities=24% Similarity=0.225 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|++++|||||+++|++..+.......++.++....+... .....++||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID--------------GKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC--------------CEEEEEEEEecCChHHHHHHHH
Confidence 48999999999999999999876655433333333322222211 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.+.-..... .++..+... ++|++|++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 999999999999999873322222 233344443 4899999999999511 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+. .+... ..++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~-~~~~~--------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQ-QFAKE--------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHH-HHHHH--------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 01111 11111 125899999999999999998875
No 166
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.61 E-value=5.8e-15 Score=161.82 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=96.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~--- 903 (1415)
.|+|+|..++|||||+++|.+..+......+++..+....+.+.. ....++||||||+..|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG--------------RVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC--------------EEEEEEEEeCCCcccCCccch
Confidence 489999999999999999998766543333332222111111111 012488999999876531
Q ss_pred -----HHhhccCcccceEEEEeccCCCChhHHHHH-HHHH------hcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 904 -----LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 904 -----lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
++.+.+..||++|||+|+.++..-+....| ..+. ..++|+|||+||+|+... ....
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 244567889999999999874332222222 2222 246899999999999521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.... ..+++++|||++|.||..|+..++..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111111 13689999999999999999887753
No 167
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=4.7e-15 Score=154.43 Aligned_cols=155 Identities=24% Similarity=0.191 Sum_probs=102.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+.......++..+....+.+. .....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG--------------GKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC--------------CEEEEEEEEECCchHHHHHhhH
Confidence 48999999999999999999876654333333222211111111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.++-..+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~----------------- 124 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVS----------------- 124 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCC-----------------
Confidence 889999999999999875443333222 2222 236899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 125 KSEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00111111111 2578999999999999999998754
No 168
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=5.1e-15 Score=151.54 Aligned_cols=154 Identities=24% Similarity=0.307 Sum_probs=106.3
Q ss_pred EEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh-----
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 903 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~----- 903 (1415)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999987655 33344444443322222110 34699999999887753
Q ss_pred --HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 904 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 904 --lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+....++.+|++|||+|+..+....+..++..+...++|+|||+||+|+... ....
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~---------------- 123 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEE---------------- 123 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHH----------------
Confidence 3345678899999999999988877776677777789999999999999731 1100
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.......... .....++++++||.+|.|+..|+.+|..+
T Consensus 124 ---~~~~~~~~~~----------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ---ELLELRLLIL----------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ---HHHHHHHhhc----------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0000000000 11245799999999999999999988753
No 169
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=6.3e-15 Score=156.48 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.....+.+.... ...+.... ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 489999999999999999998776543333322111 11111111 112378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.+.-.-+.. .++..++ ..++|+||++||+|+... ......+...... . -.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~---~--v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKEK---P--VT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccCC---C--CC
Confidence 999999999999999874332222 1233333 357899999999998531 1111111100000 0 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
........... +..+++.+||++|.||.+++..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111111111 2247999999999999999988764
No 170
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=4.2e-15 Score=162.45 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=100.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+.......+ .......+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999998766543221111 111100111110 0124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
++..+|++|||+|+.+....+....| ..+ ...++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999874332222222 222 2257999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+ .. ...++++++||++|.||.+|+.+|...+.
T Consensus 125 ~~~~~~~~-~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-EL-------------DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hh-------------hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000011 00 01257899999999999999999987553
No 171
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=4.9e-15 Score=162.14 Aligned_cols=157 Identities=16% Similarity=0.105 Sum_probs=103.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|||..|+|||||+++|.+..+......+++.++....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4599999999999999999997765433323332222111111110 01248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...+..+|++|||+|+.+.-.-+.. .++..+.. ..+|+|||+||+|+.... ...
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~----~~~------------------- 129 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK----VVE------------------- 129 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc----ccC-------------------
Confidence 9999999999999999874322222 22333333 247999999999986310 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++++||++|.||.+|+.+|...+
T Consensus 130 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 130 TEDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987755
No 172
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=3.7e-15 Score=161.69 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=103.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+.+|++..+.....+.+... +... ..+ ......|+||||||++.|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~----~~~~-------i~~----~~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN----YVHD-------IFV----DGLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee----eEEE-------EEE----CCEEEEEEEEECCCChhcccccc
Confidence 38999999999999999999876654322222211 1100 000 00113489999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH-
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM- 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~- 981 (1415)
..+..+|++|||+|+++--..+... ++..+.. .++|+|||+||+|+... ......+. .+..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~--------~~~~~ 132 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQ--------RYGKH 132 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHh--------hccCC
Confidence 8999999999999998844333332 3344443 36899999999999621 00000000 0000
Q ss_pred --HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 --RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 --~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........... .+.++++++||++|.||.+++.+|...+
T Consensus 133 ~v~~~~~~~~~~~--------------~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 133 TISYEEGLAVAKR--------------INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCCHHHHHHHHHH--------------cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00001111111 1236899999999999999999887544
No 173
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=6e-15 Score=158.10 Aligned_cols=154 Identities=24% Similarity=0.221 Sum_probs=100.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|..++|||||+.+|....+.. ..+ .+|..+... .+....+.||||||+..|..++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~----t~~~~~~~~--------------~~~~~~l~l~D~~G~~~~~~~~ 74 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESVT-TIP----TIGFNVETV--------------TYKNISFTVWDVGGQDKIRPLW 74 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-cCC----ccccceEEE--------------EECCEEEEEEECCCChhhHHHH
Confidence 559999999999999999997544421 111 122111110 0112358999999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHHHHH-h---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk-~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..||++|||+|+.+.-. ....+.|..+. . .++|++||+||+|+...+ +.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 132 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------KA---------------- 132 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------CH----------------
Confidence 999999999999999876321 12233343332 2 358999999999985311 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+ ++.. -....+.++++||++|.||.+++.+|...
T Consensus 133 ---~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 133 ---AEITEKL---GLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred ---HHHHHHh---Cccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1111111 2210 01134678899999999999999998754
No 174
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.61 E-value=7.4e-15 Score=159.77 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=104.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++|||||+.++....+.......+ +..+... + .+ ......|.||||||++.|..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----~~~~~~~--~-----~~----~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV----FDNYSAQ--T-----AV----DGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce----EeeeEEE--E-----EE----CCEEEEEEEEECCCchhhhh
Confidence 34569999999999999999999877654332222 2211100 0 00 01113489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHH-HH-HHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
++...++.+|++|||+|+++...-+... .| ..+.. .++|+|||.||+|+... ......+.... +
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~------~ 134 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQG------Q 134 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhcc------C
Confidence 9999999999999999998733322222 12 22222 36899999999998521 11111100000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......-...|... .+.++++.+||++|.||.++|.+|+..+
T Consensus 135 ~~v~~~~~~~~a~~-------------~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQ-------------IHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHH-------------cCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00000000111110 0235899999999999999999887644
No 175
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=9.6e-15 Score=154.63 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=99.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|.+..+... ...++.. +.... ........++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~---~~~~~------------~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPE---ITIPA------------DVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccc---eEeee------------eecCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998765432 1111110 00000 0001123589999999998888877
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.++..-+... ++..++. .++|+|||+||+|+...+.. ..+ ...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~-------~~~-----------~~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ-------AGL-----------EEE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch-------hHH-----------HHH
Confidence 7889999999999998754444421 2233432 36899999999999632100 000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+..+...+ ....+++++||++|.|+.+++..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 11111111 111379999999999999999887654
No 176
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=5.4e-15 Score=157.26 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=97.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+++|.+..+.. ...++..++ ..+ .+....|.||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~----------------~~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETV----------------EYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEE----------------EECCEEEEEEECCCChhcchHHHH
Confidence 8899999999999999998764321 111111111 111 112235899999999999999988
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+.-. ......+. ++.. .++|+|||+||+|+.. ..+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~------------------- 117 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG------ALS------------------- 117 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc------CCC-------------------
Confidence 8999999999999876311 11122222 2222 2479999999999852 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...+....+ ..+..+.++++||++|.||.+++.+|...
T Consensus 118 ~~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 118 VEEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 0111111110000 01224578999999999999999988653
No 177
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=5.3e-15 Score=154.61 Aligned_cols=155 Identities=18% Similarity=0.111 Sum_probs=99.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|++..+.....+.+...+ ...... ......+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL--------------DGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE--------------CCEEEEEEEEECCChhhhhHHHH
Confidence 489999999999999999997665433222221111 000000 01112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChh-HHHHHH-HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|+|+|+.+.-.-. ...++. +++ ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632110 112222 222 257999999999998620 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 15899999999999999999887544
No 178
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=8e-15 Score=155.71 Aligned_cols=163 Identities=19% Similarity=0.215 Sum_probs=101.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+++|.+..+.......+..... ..+... .....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVD--------------GKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEEC--------------CEEEEEEEEECCCCcccchhchh
Confidence 689999999999999999987664433222221111 001100 01124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHH-----HHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIES-----LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~-----l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|+.+ +++.+. +..+.. .++|+|||+||+|+... ......+...... ..
T Consensus 66 ~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~---~v- 132 (174)
T smart00174 66 SYPDTDVFLICFSVDS---PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQE---PV- 132 (174)
T ss_pred hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCC---Cc-
Confidence 9999999999999987 344332 233333 37899999999998631 1000000000000 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
............ +.++++++||++|.||.+|+..|+..
T Consensus 133 -~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 133 -TYEQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred -cHHHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 000111111111 22479999999999999999988754
No 179
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=155.68 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=118.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
..|=||++|..|+|||||||+|++.. +..+.++|.||.+..+.+. ..+.|+|.||+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-------------------~~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-------------------DELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-------------------CcEEEEeCCCcccc
Confidence 55669999999999999999999865 5678899999999866543 238899999952
Q ss_pred --------chhhHHhhccC---cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 900 --------SFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 900 --------~F~~lr~rgl~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.+..+...++. ...++|+|||+.|++....++.+.+|...++|++|++||+|.+. ..
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~------~~------ 151 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK------KS------ 151 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC------hh------
Confidence 34444444432 26678999999999999999999999999999999999999983 11
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+....+..+...|. +.. .....++.+|+.++.||++|...|..++.
T Consensus 152 ---------~~~k~l~~v~~~l~---~~~---------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 152 ---------ERNKQLNKVAEELK---KPP---------PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---------HHHHHHHHHHHHhc---CCC---------CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 11122233332231 111 11122888999999999999988877654
No 180
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=5.7e-15 Score=155.15 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=98.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+++|||||+.++.+..+.....+.+. ......+.... ....+.||||||++.|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 589999999999999999997765432222111 11000111000 012378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+++.-.-+. ..++..+.. .++|+|||+||+|+.... .+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~------~~~---------------- 125 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER------EVS---------------- 125 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC------ccC----------------
Confidence 99999999999999987332111 222222222 468999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
... ...+... + .+++|++||++|.||.+++.+|+..
T Consensus 126 -~~~-~~~~~~~------------~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 -SAE-GRALAEE------------W--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred -HHH-HHHHHHH------------h--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 000 0111110 1 1589999999999999999888653
No 181
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-15 Score=176.83 Aligned_cols=132 Identities=26% Similarity=0.339 Sum_probs=103.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcC------------cc----cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGT------------NV----QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t------------~v----~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
..++|| +.|+.|||||||||.+.|... .+ .+...+|||+...+.++-.+........+....
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 357898 899999999999999999732 11 122347888887776654443222222222223
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
+.+..-|++||.|||.+|+..+..+++++|+|++|||+.+|+..||...|+++..-.+.-++++||+|+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3345569999999999999999999999999999999999999999999999988888788899999984
No 182
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=6.4e-15 Score=154.73 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=100.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC--cccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t--~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.|+|+|.+++|||||+.+|... .+......++..++....++... .....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 4899999999999999999854 23222222222222222222210 01124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+...+..+|++|+|+|+++........ ++..+.. .++|+|||+||+|+... ..+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~--------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK------AEVTD--------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cCCCH---------------
Confidence 999999999999999998743222222 2233333 35899999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.....+... ..++++++||.+|.||.+++..|...
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011110 12579999999999999999988754
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=5.8e-15 Score=157.95 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=103.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|++..+.....+++.... ...+.+.. ....+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 489999999999999999997765433322221111 11111110 012478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..+|++|+|+|+.++...+....+ ..+ . ..++|+|||+||+|+...+ ..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~------------------ 125 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVS------------------ 125 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccC------------------
Confidence 999999999999999986554443332 222 2 2467999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+ ..+.. .++ ++++++||++|.||.+++.+|...+.
T Consensus 126 -~~~~-~~~~~------------~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 126 -TEEG-KELAE------------SWG--AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred -HHHH-HHHHH------------HcC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0000 01111 011 48999999999999999999987654
No 184
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=3.3e-15 Score=158.50 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=100.6
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+.+.|+|+|+.|+|||||+++|.+..+... ....|...... .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHH
Confidence 3456699999999999999999987543211 11112111000 1112358999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCC-hhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ..
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~-------------- 132 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------AP-------------- 132 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CC--------------
Confidence 998888999999999999976221 1222233222 2346899999999998521 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+..+...+ ++.. + ....++++++||++|+||.+++.+|+.
T Consensus 133 -----~~~i~~~l---~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 133 -----AEEIAEAL---NLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----HHHHHHHc---CCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 01111112 2210 0 113457899999999999999999863
No 185
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=7.2e-15 Score=158.72 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=101.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|....+.. ... ++|..+... .+....++||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~----T~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIP----TIGFNVETV--------------EYKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCC----ccccceEEE--------------EECCEEEEEEECCCCHhHHHHH
Confidence 349999999999999999997544432 111 112111111 0112358999999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|+.+.-. ......|. ++.. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 999999999999999875211 11122222 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l 1038 (1415)
..+...+ ++. ++. ...++++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~~l---~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTEKL---GLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHHHh---CCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 0111111 221 011 12357889999999999999999987665543
No 186
>PLN03118 Rab family protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=160.65 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=101.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|||+.++|||||+++|++..+... ...++.+.....+.+.. ....|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 45699999999999999999997765321 11111111111111110 0124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHH-HHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~-llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+..+++.+|++|||+|+.+....+... .|. .+. ..++|+|||+||+|+... ..+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------- 139 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------- 139 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC-------------
Confidence 999999999999999998743333332 222 222 135799999999998631 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........... .+++|++||++|.||.+++.+|...+
T Consensus 140 ----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 ----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00001111111 25799999999999999999988655
No 187
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.59 E-value=1.2e-14 Score=161.01 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=103.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.++....+.+... ....+.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987665444444443332222211110 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|||+|+.+.-...... ++..+.. .++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~---------------- 128 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVK---------------- 128 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccC----------------
Confidence 9999999999999998732222222 2233332 236899999999995211 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... ..++++++||++|.||.+|+.+|+..+
T Consensus 129 ----~~~~~~~~~~--------------~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 129 ----DDKHARFAQA--------------NGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ----HHHHHHHHHH--------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0001112111 014789999999999999999987654
No 188
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.3e-16 Score=169.56 Aligned_cols=225 Identities=21% Similarity=0.277 Sum_probs=156.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccce------eee---eccc----cc----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE------RTR---ELKA----NA---- 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~------~t~---~v~~----~~---- 883 (1415)
-...|+-+|||-|||||++.+|.+-. |...-.+.||..+|......-.... .+. .... .+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 44568999999999999999997643 2233357789888763221111000 000 0000 00
Q ss_pred ---ccC-CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCc
Q 000570 884 ---TLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWK 957 (1415)
Q Consensus 884 ---~~~-~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~ 957 (1415)
.++ .+++.|+|+|||.-+...+..|....|.++|+|.++.. .+|||-+||.....+.+ .+||+-||||++..
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e-- 194 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE-- 194 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH--
Confidence 111 24689999999999999999999999999999999875 68999999988887775 78899999999731
Q ss_pred cCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
+ ..+ +....|...+. |-+ ....|+||+||--+.||+-++++|+..++-+
T Consensus 195 -----~--~A~------------eq~e~I~kFi~--~t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 195 -----S--QAL------------EQHEQIQKFIQ--GTV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred -----H--HHH------------HHHHHHHHHHh--ccc----------cCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 0 011 11122222221 111 2346999999999999999999998876644
Q ss_pred HHHhhhcccccceEEEEEEEEcCc--------ceEEEEEEEeeEEccCCEEEEec
Q 000570 1038 MVEKLTFRNELQCTVLEVKVIEGH--------GTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1038 l~e~l~~~~~~~~~VlEvk~~~G~--------Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.. ++..+.++.|+.+|.+.-- |-++.+.|..|+|++||.|-+-+
T Consensus 244 vR---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 244 VR---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred cc---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 33 4566778899998876543 45666778999999999987643
No 189
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.59 E-value=7.2e-15 Score=156.18 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=100.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+.+|++..+.......+...+.. .+... .....+.||||||++.|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVD--------------GKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEEC--------------CEEEEEEEEeCCCchhhhhccc
Confidence 49999999999999999999866543322222211110 01110 0112489999999999999888
Q ss_pred hccCcccceEEEEeccCCCChhHH-H-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.++..+|++|||+|+++--.-... . ++..++. .++|+|+|+||+|+...|. ....+....... ..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~~~-----v~ 136 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQEP-----VK 136 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccCCC-----cc
Confidence 889999999999999863221122 1 2223332 3789999999999863211 100010000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
........... +.+++|+|||++|.||.+|+.+|+..
T Consensus 137 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 00000001111 23589999999999999999988753
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=152.38 Aligned_cols=157 Identities=24% Similarity=0.326 Sum_probs=116.9
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCccc-------ccccCc-----eeEeeceeEecccccceeeeecccccccCCC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~-------~geagG-----ITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..++.+.|+|+|..++||||++.+|...... .....+ +.+++|...+. ...
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-----------------~~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-----------------EDT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-----------------Ccc
Confidence 3567788999999999999999999865421 111112 22333332222 125
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC-CceEEEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
+++|+|||||.+|..|+.-.++.++.+|+|||.+.+..-...+.++++...+ +|++|++||.|+...|.+
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 7999999999999999999999999999999999977776678889999888 999999999999866532
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..|...|... + ..+|+|+++|..++|..+.|..|..
T Consensus 140 ----------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 140 ----------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred ----------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHHHHHh
Confidence 1122222211 0 2479999999999999998887754
No 191
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=1.5e-14 Score=160.61 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|.+..+......++..++....+.+.. ....+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~--------------~~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG--------------KTVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHH
Confidence 3499999999999999999998766433333333232222222211 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+...-+.+.. +..++. .++|+|||+||+|+...+. ..
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~------------------ 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS----VA------------------ 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC----CC------------------
Confidence 999999999999999987443333332 333333 4689999999999852110 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
......+... ..++++++||++|.||.+++..|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0011112111 126899999999999999999998766554
No 192
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.59 E-value=1.2e-14 Score=153.43 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=101.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|++..+.....+.+..... ..+... .....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVD--------------GKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC--------------CEEEEEEEEeCCCcccccccch
Confidence 4899999999999999999987764333222221111 111111 0112489999999999988888
Q ss_pred hccCcccceEEEEeccCCCChhH--HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.+....+. ..++..+... ++|+|||+||+|+...+ +....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE------NTLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch------hhhhhcccCCCcc------C
Confidence 88899999999999987433222 2233334333 58999999999997421 0000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 00111111111 2348999999999999999988764
No 193
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=4.8e-15 Score=152.41 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=88.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc-----ch
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-----~F 901 (1415)
.|+|+|++|+|||||+++|++..+... . |. +. .+. ..+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~--~--t~--~~-------------------~~~---~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYK--K--TQ--AV-------------------EYN---DGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccc--c--ce--eE-------------------EEc---CeeecCchhhhhhHHHH
Confidence 389999999999999999986643210 0 10 00 011 2689999972 34
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+. ..++.+|++|||+|+.++...++..++.. ...|+|+|+||+|+... ...
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~------------------ 106 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVD------------------ 106 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccC------------------
Confidence 4443 35789999999999998877666444333 24599999999998520 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 107 -~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 -IERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -HHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 001111111111 23789999999999999988763
No 194
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=7.2e-15 Score=174.15 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=96.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-------
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH------- 898 (1415)
|.|+|+|++|+|||||+++|++..+......+.|.+.....+.+. .+..++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999876443333344433321111110 1235999999997
Q ss_pred --cchhhHHhhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 899 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 899 --e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
+.|..++ ..+..+|++|+|||+++......... ..++. ..++|+|+|+||+|+... ..
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~--------- 318 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PR--------- 318 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------Hh---------
Confidence 3343332 24678999999999988655433322 23333 346899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+. .+.. ...++|+|||++|.||..|+..|..
T Consensus 319 ----------v~----~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 319 ----------IE----RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred ----------HH----HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 00 0100 1136899999999999999988864
No 195
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=3e-14 Score=154.43 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|++++|||||+++|++..+..+. .+.+...+....+.... ....|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE--------------RVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 4899999999999999999987665322 12221111111111110 01237899999999999998
Q ss_pred hhccCcccceEEEEeccCCCChhH-HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...+..+|++|||+|+.+....+. ..++..++.. ++|+|||+||+|+... .... ..+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~-----~~~~-~~v~------------- 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ-----DRSL-RQVD------------- 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc-----cccc-CccC-------------
Confidence 888899999999999987432222 2233444433 6899999999998521 0000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...... ..++++++||++|.||.+|+.+|...+.
T Consensus 129 ~~~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADE---------------IKAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHH---------------cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011111111 1257899999999999999999886653
No 196
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=5.1e-15 Score=157.01 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=76.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|.+..+.... ...+|..+..+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 799999999999999999976554322 22222211111 112245899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHHHHH--hcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk--~~~vP~IVaINKiD~~ 953 (1415)
.+..+|++|||||+.+..... ....+..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998743221 222233332 2579999999999985
No 197
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.58 E-value=2.4e-14 Score=155.87 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=103.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++||||||.+|....+.......++.++....+..+. ....|.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4499999999999999999987655433222333222111111111 11348999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...++.+|++|||+|+++...-+... ++..+.. .++|+||+.||+|+.... .-.
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~----~v~------------------- 129 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR----QVA------------------- 129 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc----CCC-------------------
Confidence 98899999999999998843332222 2333432 468999999999985210 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++.+||++|.||.++|.+|+..+
T Consensus 130 ~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987644
No 198
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=2.2e-14 Score=153.12 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=102.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||+.++|||||+.+|++..+.......+...+....+.... ....+.||||||++.|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILG--------------VPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhhHH
Confidence 489999999999999999998776544433333222111111111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+.-..... .++..+... .+|+|+|.||+|+...+ ....
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~----------------- 126 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL----------------- 126 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc-----------------
Confidence 999999999999999763222222 223333222 25799999999985310 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... ..++++.+||.+|.||.+|+..|..++
T Consensus 127 -~~~~~~~~~~~--------------~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 127 -MEQDAIKLAAE--------------MQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -cHHHHHHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00001111110 014789999999999999999987765
No 199
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=1.4e-14 Score=154.04 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=99.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+. +... ....+|..... ..+....++||||||+..|..++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~----~~~t~g~~~~~--------------~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK----VAPTVGFTPTK--------------LRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc----ccCcccceEEE--------------EEECCEEEEEEECCCcHHHHHHHH
Confidence 3899999999999999999865 2211 11222221110 011223589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChh-HHHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..||++|||||+.+.-..+ ....+..+.. .++|++||+||+|+.... +
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------ 117 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------ 117 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C------------------
Confidence 9999999999999998743222 2333333332 468999999999986311 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCC------CChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG------eGI~dLl~~L~ 1031 (1415)
...++..+.-..+. ...+..++++++||++| .||.+.|.||+
T Consensus 118 -~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 -GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred -HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 11122222111110 01123478999999998 89999999886
No 200
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.57 E-value=2.2e-14 Score=153.74 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=101.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+++...+.......+..... ..+... .....|.||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD--------------GKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEEC--------------CEEEEEEEEECCCchhhhhhh
Confidence 35899999999999999999976654332222211110 001000 111248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-H-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|||+|+++.-..+.. . ++..+.. .++|+|||.||+|+... ...+ ..+ ......
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~-------~~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKL-------KEKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHH-------hhccCC
Confidence 9899999999999999874333332 1 2233332 35899999999998521 0000 000 000000
Q ss_pred H--HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 R--LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~--l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
. ..... .+.. .+ +.++++++||++|.||.+|+..|+.
T Consensus 134 ~v~~~~~~-~~~~------------~~-~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 134 PITYPQGL-AMAK------------EI-GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCHHHHH-HHHH------------Hc-CCcEEEEecccccCCHHHHHHHHHH
Confidence 0 00000 1111 01 2358999999999999999988764
No 201
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.57 E-value=1.5e-14 Score=158.85 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=100.5
Q ss_pred EeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccC
Q 000570 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 910 (1415)
Q Consensus 831 lGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~ 910 (1415)
||+.++|||||+.+|++..+.......+..++....+.++. ....|.||||||++.|..++...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997665432222222121111111110 1135999999999999999999999
Q ss_pred cccceEEEEeccCCCChhHHHHH-HHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 911 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 911 ~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
.+|++|||+|+.+..+.+....| ..++. .++|+|||+||+|+... .... ..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-----~v~~-------------------~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-----KVKA-------------------KSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-----cCCH-------------------HHH-
Confidence 99999999999986555444333 33443 46899999999998520 0000 000
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 135899999999999999999987644
No 202
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.57 E-value=1.1e-14 Score=164.97 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=101.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||..++|||||+++|++..+.....+++. ++....+... .....|.||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~--------------~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR--------------GEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC--------------CEEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998766543333221 1111111111 0113488999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHH------------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK------------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk------------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
..+..+|++|||+|+++.-.-+... ++..+. ..++|+|||+||+|+.... ...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~----~v~---------- 132 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR----EVQ---------- 132 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc----ccC----------
Confidence 8889999999999998743222221 112221 1368999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+...+... ..++++++||++|.||.+|+.+|+.++
T Consensus 133 ---------~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 133 ---------RDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---------HHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 01111111110 135899999999999999999998754
No 203
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.8e-14 Score=154.26 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.+.....+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN--------------KIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHhhHH
Confidence 489999999999999999998776542222222222111111110 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.+.-....+.. +..+.. .++|+||++||+|+... ..+.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~----------------- 124 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD----------------- 124 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC-----------------
Confidence 99999999999999987432222222 222322 35799999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
......+... ..++++.+||++|.||.+++.+|+..+..
T Consensus 125 -~~~~~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 -SNIAKSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHHHHHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000111111 12489999999999999999998876543
No 204
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=2e-14 Score=152.32 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=98.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|.+..+.....+. ++..+.. ...+ ......+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t----~~~~~~~-------~~~~----~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPT----IEDSYRK-------QVEI----DGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCc----chheEEE-------EEEE----CCEEEEEEEEeCCCcccchhhhH
Confidence 4899999999999999999866543221111 1111100 0000 00112478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HH----HHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~l----lk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+.+.-.-+....| .. ....++|+|+++||+|+... ....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~~---------------- 125 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQVS---------------- 125 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------CccC----------------
Confidence 999999999999999874322222221 11 12346899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.......... + +.++++++||++|.||.+++.+|+..
T Consensus 126 -~~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 126 -REDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred -HHHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 0001111111 1 23689999999999999999998753
No 205
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=3.5e-14 Score=153.54 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=100.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|++..+.......+..++....+.... ....|.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG--------------TEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCCchhHHHhhH
Confidence 489999999999999999998766543333322222111111111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+....+.. .++..++. ..+| |+|+||+|+........ + ..
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~---------------~----~~ 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE---------------Q----EE 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh---------------h----hh
Confidence 999999999999999873322222 22333333 2356 67899999963210000 0 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+......+... + .++++++||++|.||.+|+.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~--~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------M--KAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111112111 1 15899999999999999999887544
No 206
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=3.2e-14 Score=150.09 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+......+++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 4899999999999999999987765443333333322222211110 12488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|+|+|+.+. .+.+.+ ..+.. .++|+|++.||+|+... ....
T Consensus 68 ~~~~~~~~~i~v~d~~~~---~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~---------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSE---RSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG---------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC----------------
Confidence 999999999999999873 333322 22222 35899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+... + .++++++||++|.||.+++.+|..+
T Consensus 125 ----~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 ----DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ----HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0011111111 1 1589999999999999999998753
No 207
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=2.5e-14 Score=158.29 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=103.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+++|++..+......+++.++....+.+. .. ....|.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~----------~~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE----------PG---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC----------CC---CEEEEEEEeCCcchhHHHHH
Confidence 459999999999999999999876643322222222111111110 00 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
...++.+|++|||+|+.+ +.++..+ ..+. ...+|+||+.||+|+...+ ...
T Consensus 70 ~~~~~~~d~iilv~D~~~---~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~-------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITN---RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT-------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC--------------
Confidence 999999999999999987 3333332 2222 2346889999999986210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
......+... ++ ++++++||++|.||.+++.+|...+...
T Consensus 129 ------~~~~~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 ------REEAEKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ------HHHHHHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001112111 11 6899999999999999999998765544
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.56 E-value=1.8e-14 Score=185.16 Aligned_cols=154 Identities=24% Similarity=0.303 Sum_probs=108.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+++||+|+|||||+|+|++.+...+...|+|.+.-...+. +....++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~----------------~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS----------------TTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE----------------cCceEEEEEECCCcccccc
Confidence 345799999999999999999998877777778887654333222 2234599999999998864
Q ss_pred HH----------hhc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 904 LR----------SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 904 lr----------~rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.. ... ...+|++|+|||+.+... ....+..+...++|+|+|+||+|+.. ...+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~------~~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE------KQNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh------ccCcH------
Confidence 21 112 246899999999988533 33456677788999999999999852 11110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...|.+. + .+|+||+||.+|.||++|+..+....
T Consensus 132 ---------id----~~~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------ID----IDALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HH----HHHHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 01 1112111 1 25899999999999999999887654
No 209
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=2.5e-14 Score=150.95 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=95.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-hhhHHh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 906 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~-F~~lr~ 906 (1415)
|+|+|+.++|||||+.+++...+.....+.+ ..+....+.+ ......+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~--------------~~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTI--------------DGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEE--------------CCEEEEEEEEECCCCcccccchHH
Confidence 8999999999999999998654432111111 1110001100 01112488999999985 455667
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+.++.+|++|||+|+.+....+....| ..+. ..++|+|+|+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788899999999999885333322222 2222 237899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~ 1034 (1415)
.... ..+... + .++++++||++|. ||.+++..|+..+
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEG-EKLASE------------L--GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHH-HHHHHH------------c--CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 0000 011110 1 1589999999995 9999999987644
No 210
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.56 E-value=2.6e-14 Score=148.58 Aligned_cols=152 Identities=19% Similarity=0.117 Sum_probs=98.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+.......+ .+.....+... .....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTI-EDSYRKTIVVD--------------GETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCCh-hHeEEEEEEEC--------------CEEEEEEEEECCChHHHHHHHHH
Confidence 8999999999999999998765433322211 11111101000 01124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCCh-hHHHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEP-QTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~-QT~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|+|+|+.+.... ....++..+.. .++|++||+||+|+...+ ...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec-------------------
Confidence 99999999999998773221 12222333322 368999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... .++++++||.+|.||.+++.+|..
T Consensus 124 ~~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 124 KEEGKALAKEW---------------GCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHh
Confidence 01111112111 158999999999999999998875
No 211
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=4.2e-14 Score=157.52 Aligned_cols=187 Identities=20% Similarity=0.261 Sum_probs=111.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 897 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG 897 (1415)
.+.-|...|+|+|.+|+|||||.|.+.++.|..-.. .++++++.+....- ..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-----------------eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-----------------ETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-----------------ceEEEEecCCc
Confidence 455677889999999999999999999887754222 22233332222211 13599999999
Q ss_pred Cc------------chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhc-CCceEEEEEecccccCCccCCChhH
Q 000570 898 HE------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 898 He------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.. +|.....+++..+|++|+|+|+.+.-.+.....|..|..+ ++|-|+++||+|.+..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--------- 200 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--------- 200 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh---------
Confidence 22 1222344678889999999999863333344455556554 5899999999998631
Q ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHHHHHcCCchhhhhcc-cCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQ-NEFNMRLVQIVTQLKEQGMNTELYYKN-KDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~-~ef~~~l~~I~~~L~e~gl~~e~~~~~-~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...|......+- ..+......+...|.. ......|+. -.|..+-.+|++||++|.||.+|-++|+..+
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 011111000000 0000001111111211 111112211 1244566799999999999999999998764
No 212
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.55 E-value=2.4e-14 Score=151.61 Aligned_cols=150 Identities=21% Similarity=0.191 Sum_probs=93.3
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccC-CCCEEEEeCCCCcch-------
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHESF------- 901 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~-~~~l~iIDTPGHe~F------- 901 (1415)
|+|+.|+|||||+++|.+..+..+...+.|.+.....+. +. ...+.||||||+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE----------------VPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE----------------cCCCCeEEEEeccccchhhhcCCCc
Confidence 689999999999999998765333444445443222111 12 346899999997432
Q ss_pred hhHHhhccCcccceEEEEeccCCC-----C-hhHHH-HHHHHH----------hcCCceEEEEEecccccCCccCCChhH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGL-----E-PQTIE-SLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv-----~-~QT~E-~l~llk----------~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.....+.+..+|++|+|+|+.+.. . ..... ++..+. ..++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~- 137 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EE- 137 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hH-
Confidence 112234567799999999998863 2 11111 222222 147899999999999631 00
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+......... .....+++++||++|.|+..|+..|..+
T Consensus 138 ------------------~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 ------------------LEEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000000000 1123579999999999999999987643
No 213
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=4.8e-14 Score=155.86 Aligned_cols=157 Identities=22% Similarity=0.170 Sum_probs=101.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+++|++..+.......++.+.+...+.+.. ....|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~--------------~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN--------------KPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999998766543322222221111111110 00148899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+....+.. .++..+.. .++|+|+++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999874332222 22222222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||++|.||.++|.+++..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999998887554
No 214
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=5.2e-14 Score=151.52 Aligned_cols=166 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||+|+.++....+.......+ +..+... + .+. .....|.||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti----~~~~~~~--~-----~~~----~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSAN--V-----SVD----GNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcc----eeeeEEE--E-----EEC----CEEEEEEEEECCCCccccccch
Confidence 48999999999999999999877654332322 2111100 0 000 0113589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+.. .++..++. .++|+|||.||+|+... +.. ...+... + . .
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~----~~~-----~~~~~~~-~-~---v 133 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD----KQY-----LADHPGA-S-P---I 133 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC----hhh-----hhhccCC-C-C---C
Confidence 999999999999999874443332 23444442 36899999999999521 000 0000000 0 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...-...+... + +..+++.|||++|.||.+++..++..+
T Consensus 134 ~~~~~~~~a~~------------~-~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 134 TTAQGEELRKQ------------I-GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHH------------c-CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00001111111 0 123699999999999999999887643
No 215
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=6.2e-14 Score=169.89 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=98.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|.|+|+|.+|+|||||+|+|++..+......|.|.+.....+.+. ....++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCHH
Confidence 679999999999999999999876654343444433321111110 112588999999743
Q ss_pred ----hhhHHhhccCcccceEEEEeccCCCChhHH----HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~----E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..+ ...+..+|++|+|+|+++....... ..+..+...++|+|+|+||+|++..+ .
T Consensus 263 lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-----~---------- 326 (426)
T PRK11058 263 LVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-----E---------- 326 (426)
T ss_pred HHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-----h----------
Confidence 3332 3346789999999999986543332 23344444578999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+. ....+ ...+|+|||++|.||..|+.+|...+.
T Consensus 327 --------~~~~-----~~~~~--------------~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --------PRID-----RDEEN--------------KPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --------HHHH-----HHhcC--------------CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0000 00111 112588999999999999999987653
No 216
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=1.8e-14 Score=176.21 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=104.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
.+.|+|+|++|+|||||+++|++..+. .....|+|.++....+.+ .+..++||||||+..|..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----------------~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----------------DGIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----------------CCeEEEEEeCCCCCCCcc
Confidence 356999999999999999999987642 344556665543322222 223589999999876643
Q ss_pred H--------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 904 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 904 l--------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+ ....+..+|++|+|+|+.++...+....|.. ..++|+|+|+||+|+...+ .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------D------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------h------------
Confidence 2 2235778999999999999877666555544 4578999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+. . ....++|++||++|.||..|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
No 217
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=6.2e-14 Score=165.04 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=99.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
-|+|+|.+++||||||++|++.........++|. ++|...+. ....|+|+||||...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----------------~~~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----------------DYKSFVIADIPGLIEGASE 222 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----------------CCcEEEEEeCCCccCCCCc
Confidence 3999999999999999999976544333333343 33332221 123599999999632
Q ss_pred ---hhhHHhhccCcccceEEEEeccCCCChhHHHHH-HHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.....+.+..|+++|+|||+.+.-..+....| ..|.. .++|+|||+||||++..+ ...
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~------ 290 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER------ 290 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH------
Confidence 333445667789999999999864333333333 33433 368999999999986311 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
......+... ..+++|+|||++|+||.+|+.+|..++.
T Consensus 291 ------------~~~~~~~~~~--------------~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 291 ------------EKRAALELAA--------------LGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred ------------HHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000011000 1157999999999999999999987654
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=1.7e-14 Score=148.48 Aligned_cols=134 Identities=26% Similarity=0.339 Sum_probs=98.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC----Ccchhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 903 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----He~F~~ 903 (1415)
|.|||.+++|||||+.+|.+...... -||.+..+ =.+||||| +..|..
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~------------------------~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY------------------------DNTIDTPGEYIENPRFYH 55 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec------------------------ccEEECChhheeCHHHHH
Confidence 89999999999999999987654322 24443211 24699999 555666
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
.....+..||+++||+|+.... ....-.++..++.|+|=||||+|+..+ ...+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~---~~~pP~fa~~f~~pvIGVITK~Dl~~~------------------------~~~i 108 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPR---SVFPPGFASMFNKPVIGVITKIDLPSD------------------------DANI 108 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCC---ccCCchhhcccCCCEEEEEECccCccc------------------------hhhH
Confidence 5566677899999999998743 223345667788999999999999621 1234
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
......|...|+. .+|+||+++|+||.+|.++|
T Consensus 109 ~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 109 ERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHH
Confidence 5556677777753 56999999999999998876
No 219
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2e-14 Score=171.33 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=94.1
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcccccc-----------------cCceeEeeceeEecccccceeeeecccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------------AGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-----------------agGITq~iga~~~~~~~i~~~t~~v~~~ 882 (1415)
+..+|+ |+++||-.||||+|++.|......... .+|++++..-..+-.. +
T Consensus 125 p~~irn--V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~-----------D 191 (971)
T KOG0468|consen 125 PERIRN--VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS-----------D 191 (971)
T ss_pred cceEEE--EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe-----------c
Confidence 455676 999999999999999999865443221 1222222211111111 1
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..-+.+-++|+|||||.+|+..+.++++.+|++|||||+.+|++-+|...|.++-..++|++|||||+|++
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 12234569999999999999999999999999999999999999999999999999999999999999986
No 220
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.54 E-value=4.5e-14 Score=166.04 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=96.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
-|+|+|.+++||||||++|+..........++| .++|...+. ....|+|+||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-----------------~~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-----------------DGRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-----------------CceEEEEEeCCCcccCCcc
Confidence 499999999999999999997653332222223 333332221 013589999999742
Q ss_pred ---hhhHHhhccCcccceEEEEeccCC---CChhHHHHH-HHHHh-----cCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~G---v~~QT~E~l-~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
+.....+.+..||++|+|||+.+. ...+....| +.|.. .+.|+|||+||+|++.. ..
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----- 290 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----- 290 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH-----
Confidence 223344556679999999999864 122233332 23332 36899999999999631 00
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+..+...|... + .+++|+|||++|+||.+|+.+|..++
T Consensus 291 --------------~~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 --------------LAELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --------------HHHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 11112222211 0 14799999999999999999887643
No 221
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=6.2e-14 Score=168.14 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=99.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
-|+|+|.+|+||||||++|++..+......++|.+.....+.+. ....|.|+||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~---------------~~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD---------------DERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC---------------CCcEEEEEeCCCccccccchh
Confidence 39999999999999999999766544444444533322222111 012499999999532
Q ss_pred -hhhHHhhccCcccceEEEEeccC----CCChhHHHHHHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~----Gv~~QT~E~l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+.....+.+..||++|+|||+.. ....+...+++.+.. .+.|+|||+||+|++. ...
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~------~~e------- 292 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD------EEE------- 292 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC------hHH-------
Confidence 22233456788999999999872 111222333444444 3589999999999862 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+...+..+... ++...++|++||++|.||.+|+..|..++.
T Consensus 293 ------------l~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 293 ------------AEERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------HHHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 01111112111 011237899999999999999999987664
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.53 E-value=9.8e-14 Score=144.58 Aligned_cols=153 Identities=24% Similarity=0.349 Sum_probs=100.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+|+|++|+|||||++.|.+.... .....+.|..+..+.+ ...++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-------------------NDKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-------------------cCeEEEecCCCccccccCH
Confidence 799999999999999999953332 1112223332211111 01599999999754
Q ss_pred -----hhhHHhh---ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 -----FTNLRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 -----F~~lr~r---gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..+... ....++++++|+|+.+..+......+..+...++|+++++||+|++.. .. .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~------~~-~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK------SE-L------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh------HH-H-------
Confidence 3333322 233567899999999888888888888888889999999999998631 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+...+.. +....+++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~-------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKL-------------FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHh-------------ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 0000111111211 1134689999999999999999988754
No 223
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=4.5e-14 Score=150.49 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..|+|+|..|+|||||+.+|++..+. ....+.+..+.....+.+.. ....+.||||+|...|..+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~--------------~~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG--------------QEKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC--------------eEEEEEEEecCCccccccc
Confidence 34999999999999999999987765 33333222221111111111 0124789999999999988
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHH----HHHHH-hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIES----LNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~----l~llk-~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..||++|||+|+.+. .+.+. +..+. ..++|+|+|+||+|+...+.. . .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~---~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-----~----~---------- 128 (169)
T cd01892 71 NDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-----Y----E---------- 128 (169)
T ss_pred chhhhhcCCEEEEEEeCCCH---HHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-----c----c----------
Confidence 88888999999999999773 33333 33332 236899999999998531100 0 0
Q ss_pred HHHHHHHHHHHH-HcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLK-EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~-e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
... ..+. ..++ .+++++||.+|.||.+|+..|...+
T Consensus 129 -~~~----~~~~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 129 -VQP----DEFCRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred -cCH----HHHHHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 000 0111 1111 1458999999999999999887654
No 224
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.52 E-value=1e-13 Score=147.74 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=99.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.++.+..+.....+.+ .+.....+..+. ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 48999999999999999998765543222211 111111111110 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-+.. .++..+.. .++|+||++||+|+... ......+...... .-.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGEK-----PVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCCC-----CcC
Confidence 999999999999999874332222 23444443 46899999999998521 1110000000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+. .|... .+..+++++||++|.||.+|+..++
T Consensus 136 ~~~~~-~~a~~-------------~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAK-ALAEK-------------IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHH-HHHHH-------------hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 00111 11111 0124899999999999999998765
No 225
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=7.4e-14 Score=170.32 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=97.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
.|+|+|.+++||||||++|++.........++|.++....+. +....|+|+||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~----------------~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQ----------------AGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEE----------------ECCeEEEEEECCCCccccchhh
Confidence 499999999999999999997655444444444333222221 1123589999999532
Q ss_pred -hhhHHhhccCcccceEEEEeccC---CCCh-hHHHHH-----HHH----------HhcCCceEEEEEecccccCCccCC
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMH---GLEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~---Gv~~-QT~E~l-----~ll----------k~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
......+.+..||++|+|||+.+ +..+ ..+..| .++ ...+.|+|||+||+|++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 11223455677999999999974 1111 112222 222 2246899999999998520
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
... ...+...|... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~el------------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -REL------------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HHH------------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 000 00111122211 2589999999999999999999877654
No 226
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=1.8e-13 Score=147.47 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+.....+.+..... ..+... .....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEID--------------EQRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEEC--------------CEEEEEEEEECCCchhhhhcch
Confidence 4899999999999999999987665433233221110 011111 0113489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~ 953 (1415)
..++.+|++|||+|+++.-.-+.. .++..++. .++|+|||.||+|+.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 999999999999999874433331 23333433 368999999999985
No 227
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.51 E-value=7.2e-14 Score=150.14 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=106.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++||||||.+|....+.. +...+|..... +.+....++|+|.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEeccccccccc
Confidence 33459999999999999999998654332 22222221111 112234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC-ChhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++..++..+|++|||||+++.- .....+.|..+. ..++|++|++||+|+... .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch---------------
Confidence 9999999999999999998632 233444444332 246899999999998631 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...|....+. ....+.++++||.+|+||.+.++||...
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11222222212111 1356789999999999999999998753
No 228
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=1.1e-13 Score=152.29 Aligned_cols=187 Identities=16% Similarity=0.153 Sum_probs=106.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
|.|+|+|+.|+|||||+.+|....+.... ..++..++.+.+... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 56999999999999999999876543221 222222222222110 112459999999999999988
Q ss_pred hhccCcc-cceEEEEeccCCCC--hhHHHHHHH-H---H--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 906 SRGSGLC-DIAILVVDIMHGLE--PQTIESLNL-L---K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 906 ~rgl~~a-DiaILVVDa~~Gv~--~QT~E~l~l-l---k--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
...+..+ +++|||||+.+... ..+.++|.. + . ..++|+|||+||+|+... .+...+...|......++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a---~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA---KPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc---CCHHHHHHHHHHHHHHHH
Confidence 8888888 99999999988531 223333322 1 1 147999999999998632 122223333322222211
Q ss_pred HHHHHHHHHHHHHHHHc----CCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQ----GMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 1031 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~----gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~ 1031 (1415)
..-...+..+...-... |.. .-.+.-..+...|.++.+|+..+. ||..+..||.
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~-~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKG-GKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHhcccccccccccccccccccc-CcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 11110000000000000 000 000111233467899999999876 5888777764
No 229
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.51 E-value=1.9e-13 Score=147.88 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=101.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+++...+.....+.+...+. ..+..+ .....|.||||+|.+.|..++.
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~--------------~~~~~l~iwDtaG~e~~~~~~~ 71 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID--------------TQRIELSLWDTSGSPYYDNVRP 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEEC--------------CEEEEEEEEECCCchhhHhhhh
Confidence 4999999999999999999987665432222211110 011111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+...-+.. .++..++. .++|+|||.||+|+... ......+..+.... . .
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~~---v--~ 140 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQTP---V--S 140 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCCC---C--C
Confidence 999999999999999874333332 22233333 36899999999998521 01000000000000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCC-hhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeG-I~dLl~~L~~ 1032 (1415)
... ...|... + +.++++.|||++|.| |.+++..++.
T Consensus 141 ~~~-~~~~a~~------------~-~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 141 YDQ-GANMAKQ------------I-GAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHH-HHHHHHH------------c-CCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 001 1112111 0 124899999999998 9999988765
No 230
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=2e-13 Score=153.05 Aligned_cols=171 Identities=17% Similarity=0.121 Sum_probs=104.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
....|+|||..++|||+|+.+|....+.......|..... ..+... -....|.||||||++.|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~--------------~~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE--------------EQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC--------------CEEEEEEEEeCCCchhhHH
Confidence 3455999999999999999999987665433333321110 001110 0112489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhH--HHHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
++..+++.+|++|||+|+++...-+. ..++..++. .++|+|||.||+|+... ......+..+... ..
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~~---~V 147 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQA---PI 147 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccCC---cC
Confidence 99999999999999999987433332 122334442 36899999999998521 0000000000000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~ 1034 (1415)
............| ..+++.|||++|. ||.++|..++..+
T Consensus 148 --s~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 148 --SYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred --CHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 0001111111111 1268999999998 8999999887644
No 231
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=2e-13 Score=164.75 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=96.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
-|+|+|.+++||||||++|++.........++|.++....+.+. ....|+|+||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---------------~~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---------------DGRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---------------CCceEEEEECCCCcccccccc
Confidence 49999999999999999999766443333444443322221111 023599999999632
Q ss_pred -hhhHHhhccCcccceEEEEeccCC--CCh-hHHH-HHHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIE-SLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~G--v~~-QT~E-~l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+.....+.+..|+++|+|||+++. ..+ .... ++..|.. .++|+|||+||+|+.. ..
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~------- 290 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE------- 290 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH-------
Confidence 222334556679999999999752 222 2222 2334443 3689999999999741 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+. .+... ++ +++|+|||++|+||.+|+.+|..++.
T Consensus 291 ----------e~l~----~l~~~------------l~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 291 ----------ENLE----EFKEK------------LG--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred ----------HHHH----HHHHH------------hC--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011 11111 01 47999999999999999999877654
No 232
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.50 E-value=1.7e-13 Score=152.87 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=77.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||..++|||+||.+|.+..+.....+++...... .+.++ .....|.||||+|++.|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~--------------~~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEID--------------KRRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEEC--------------CEEEEEEEEeCCCcHHHHHHhH
Confidence 48999999999999999999876654333333211110 11111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----H-HHHh--cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----N-LLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~-llk~--~~vP~IVaINKiD~~ 953 (1415)
.++..+|++|||+|+.+. ++++.+ . .++. .++|+|||.||+|+.
T Consensus 68 ~~~~~~d~illvfdis~~---~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 68 LAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HhccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 999999999999999884 443332 2 2222 468999999999985
No 233
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.49 E-value=1.8e-13 Score=166.81 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=103.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
+.|+|+|++|+|||||+++|++... ......|+|.++....+.+ .+..++||||||+..+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~----------------~g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL----------------NGILIKLLDTAGIREHADF 267 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE----------------CCEEEEEeeCCCcccchhH
Confidence 4599999999999999999998653 2344566776643333222 2234899999998665432
Q ss_pred --------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 905 --------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 905 --------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
....+..+|++|||+|+.++...... ++..+...++|+|+|+||+|+... +.
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-------~~------------ 327 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-------SL------------ 327 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-------ch------------
Confidence 23567789999999999988776665 566666678999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
. .+... ..+++|++||++ .||.+++..|...+.
T Consensus 328 -------~----~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -------E----FFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -------h----hhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 01000 014788999998 599999988876543
No 234
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.1e-13 Score=142.48 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=116.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.+|...|++||..++|||+|+.++++..+.......|..+.-...+.+... ...|.||||.|++.|
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~--------------~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--------------TVRLQLWDTAGQERF 84 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc--------------EEEEEEEecccHHHH
Confidence 456577999999999999999999999888766666655554444433221 135999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcC----CceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
..+...+++.+.+||+|+|+.+-- -.+|..+|.-++..+ +-+++|.||.||+.. ..+ .+
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk------rqv----------s~ 148 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK------RQV----------SI 148 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch------hhh----------hH
Confidence 999999999999999999998743 356777777666532 456789999999731 000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+ +. ....++ .+-++.+||++|+||..|+..|..+++.
T Consensus 149 eE-g~------~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 149 EE-GE------RKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HH-HH------HHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 00 00 111111 1478999999999999998887665543
No 235
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=1.9e-13 Score=137.91 Aligned_cols=151 Identities=24% Similarity=0.224 Sum_probs=99.5
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhcc
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 909 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl 909 (1415)
|+|++++|||||+++|.+.............+.....+... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 68999999999999999776521111111111111111110 1123589999999999988888888
Q ss_pred CcccceEEEEeccCCCChhHHHHH-----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 910 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 910 ~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
..+|++|+|+|+.++........+ ......++|+||++||+|+... ... ...
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------~~~-~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------RVV-SEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------cch-HHH----------------
Confidence 999999999999987665555443 3334567899999999998631 000 000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
.....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00111111 1346899999999999999998874
No 236
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.48 E-value=3e-13 Score=150.86 Aligned_cols=154 Identities=15% Similarity=0.079 Sum_probs=93.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|..|+|||||+.+|+...+. ......+..+.....+.+. .....|+||||||+..+ ++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~--------------~~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD--------------GEESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC--------------CEEEEEEEEeCCCcchH--HH
Confidence 4899999999999999999865543 1111111101111111111 11235899999999843 23
Q ss_pred hhccC-cccceEEEEeccCCCChhH-HHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 906 SRGSG-LCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 906 ~rgl~-~aDiaILVVDa~~Gv~~QT-~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
...+. .+|++|||+|+.+.-.... ..++..+.. .++|+|||+||+|+.... .+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~------~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR------EVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc------eec--------------
Confidence 34455 8999999999987432221 222333333 368999999999985310 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... ..+... ..++++++||++|.||.+|+.+|+..+
T Consensus 126 ---~~~~-~~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 126 ---VQEG-RACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ---HHHH-HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 011110 124789999999999999999987655
No 237
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.47 E-value=1.9e-13 Score=142.74 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=109.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||+|++++.+..+...... .||+.++.-+.. . +-....|.||||.|++.|..+..
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qyka----TIgadFltKev~--------V--d~~~vtlQiWDTAGQERFqsLg~ 76 (210)
T KOG0394|consen 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKA----TIGADFLTKEVQ--------V--DDRSVTLQIWDTAGQERFQSLGV 76 (210)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhcc----ccchhheeeEEE--------E--cCeEEEEEEEecccHHHhhhccc
Confidence 489999999999999999998776543322 244444332211 0 11123589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH--HHHhcC------CceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMRN------TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~--llk~~~------vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..++.+|+++||+|.++.-.-.+++.|+ +|..+. -||||+.||||+..+ .+-.-+
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~------~~r~VS----------- 139 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG------KSRQVS----------- 139 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC------ccceee-----------
Confidence 9999999999999998855555566663 444433 499999999998532 000000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .+++|+|.+||+.+.||.+.+..+.+..
T Consensus 140 ----~~~Aq~WC~s--------------~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 140 ----EKKAQTWCKS--------------KGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ----HHHHHHHHHh--------------cCCceeEEecccccccHHHHHHHHHHHH
Confidence 0111122222 2468999999999999999998876543
No 238
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.4e-13 Score=143.50 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=111.2
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+...|++||..++|||||+-++....+... +..+||+.|+.-.. .+. -....+.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv------~~~----~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTV------TVD----DNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEE------EeC----CcEEEEEEEEcCCccccc
Confidence 4556799999999999999999998877754 34456766653221 111 012358899999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHH-HHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+...+++.+++||||+|+++--.-++... +..|... ++-+.+|.||+|+... +.-.
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V~--------------- 129 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REVE--------------- 129 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----cccc---------------
Confidence 999999999999999999998444333333 3445443 2345569999999621 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..........+| .++|.+||+||.||.+++..|...++
T Consensus 130 ----~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 130 ----FEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred ----HHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhcc
Confidence 111222222232 58999999999999999998876554
No 239
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=6.5e-13 Score=143.84 Aligned_cols=164 Identities=20% Similarity=0.153 Sum_probs=97.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|....+.......+...+. ..+... .....+.+|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD--------------GKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC--------------CEEEEEEEEECCCChhccccch
Confidence 4899999999999999999865553322121111110 000000 0112488999999999988777
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|+|+|+.+.-..+.. .++..++. .++|+|||.||+|+...- . ......... +. .
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~----~-~~~~~~~~~-------~~-~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA----V-AKEEYRTQR-------FV-P 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc----c-cccccccCC-------cC-C
Confidence 778899999999999764322222 12333332 368999999999985310 0 000000000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
........... +.+++|.|||++|.||.+++.++..
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHH
Confidence 00010111111 2347999999999999999998875
No 240
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.46 E-value=1.7e-13 Score=150.45 Aligned_cols=198 Identities=21% Similarity=0.297 Sum_probs=118.2
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc---------------------------------------cccccCceeEee
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV---------------------------------------QEGEAGGITQQI 862 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v---------------------------------------~~geagGITq~i 862 (1415)
.-|+++|+|+|..|+||||++.+|...-. .-|..|||+..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34667789999999999999999963211 223344444333
Q ss_pred ceeEecccccceeeeecccccccCCCCEEEEeCCCCc-chhhHH-------hhccCcccceEEEEeccCCCChhHHHH--
Q 000570 863 GATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIES-- 932 (1415)
Q Consensus 863 ga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-~F~~lr-------~rgl~~aDiaILVVDa~~Gv~~QT~E~-- 932 (1415)
..+....+... ..|.. .-....+.||||||+- .|+-.. ..+++..-++++|||....-.|.|.-+
T Consensus 96 NLF~tk~dqv~---~~iek--~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNM 170 (366)
T KOG1532|consen 96 NLFATKFDQVI---ELIEK--RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNM 170 (366)
T ss_pred HHHHHHHHHHH---HHHHH--hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHH
Confidence 22211111000 00000 0011358999999964 443211 122344567899999988777777544
Q ss_pred ---HHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCCCc
Q 000570 933 ---LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDRGE 1008 (1415)
Q Consensus 933 ---l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~-~l~~I~~~L~e~gl~~e~~~~~~~~g~ 1008 (1415)
..+|....+|+|||.||+|+. ...|........+..+..+.. .-.-+...+....|..+-||+
T Consensus 171 lYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~------ 237 (366)
T KOG1532|consen 171 LYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR------ 237 (366)
T ss_pred HHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh------
Confidence 345667789999999999997 455665555555555544442 111122222333344444443
Q ss_pred ceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 1009 TFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 1009 ~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.+.+|.||+.||.|+.+++..+...+..+
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 46899999999999999998877655443
No 241
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=8.4e-13 Score=138.40 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=102.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|.+..+.......+..+.....+.... ....|.||||||+..|..++..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDG--------------KPVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETT--------------EEEEEEEEEETTSGGGHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccc--------------cccccccccccccccccccccc
Confidence 89999999999999999998766543333221222222221111 1124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHH----HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN----LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~----llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|.++ +.+.+.+. .+. ..++|+||+.||.|+...+ ..+
T Consensus 68 ~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~----------------- 123 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVS----------------- 123 (162)
T ss_dssp HHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSC-----------------
T ss_pred cccccccccccccccc---cccccccccccccccccccccccceeeeccccccccc----cch-----------------
Confidence 9999999999999987 34443332 222 2258999999999986311 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... + ++++.+||++|.||.+++..++..+
T Consensus 124 --~~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 --VEEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp --HHHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 01111112221 2 6999999999999999999887644
No 242
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.45 E-value=2.8e-13 Score=170.49 Aligned_cols=146 Identities=25% Similarity=0.267 Sum_probs=103.1
Q ss_pred eCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH------H
Q 000570 832 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 905 (1415)
Q Consensus 832 GhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l------r 905 (1415)
|.+|+|||||+++|++.++..+...|+|.+.....+.+. ...++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ----------------GEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC----------------CeEEEEEECCCccccCccchHHHHH
Confidence 889999999999999988777778888877654443322 234899999999988653 1
Q ss_pred hh--ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 906 SR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 906 ~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
.. ....+|++|+|+|+.+. ......+..+...++|+|+|+||+|+... ..+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i------------------- 117 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGI------------------- 117 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCC-------------------
Confidence 21 23468999999999872 23444555666788999999999998521 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..-...+.+. + .+|++++||++|.|+++|++.+....
T Consensus 118 ~~d~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 118 RIDEEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred hhhHHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0001112111 1 25899999999999999999987653
No 243
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=1.1e-12 Score=145.20 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=101.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.....|+|+|+.|+|||||+++++...+......++...+....+... .....|.+|||||+..|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~i~i~~~Dt~g~~~~~ 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN--------------CGPICFNVWDTAGQEKFG 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC--------------CeEEEEEEEECCCchhhh
Confidence 334569999999999999998877655443222222222211111111 111248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.++...+..++++|+|+|+.+....++...| ..+. ..++|+++++||+|+... ...
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------~~~-------------- 131 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-------QVK-------------- 131 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-------cCC--------------
Confidence 9998888899999999999876555444333 2222 246899999999998520 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.. ..+.++++||++|.||..++.+|...
T Consensus 132 ----~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 132 ----ARQITFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred ----HHHHHHHHH---------------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 001111111 12478999999999998888877643
No 244
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-12 Score=139.30 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|+|..|+|||-|+-++....+......+|..+...-.+..+... ..|.||||.|+++|..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhhh
Confidence 3459999999999999999999888887766666666554444443211 25999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+..+++.|+++|||+|++.--.-..... |..++ ..++|.++|.||+|+...|....
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~-------------------- 134 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST-------------------- 134 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH--------------------
Confidence 9999999999999999987322211111 22233 24689999999999964321100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCccee-EEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~-iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.....|... ..+| ++++||+.+.||.+.|..|...+...
T Consensus 135 ----~~a~~fa~~--------------~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 135 ----EEAQEFADE--------------LGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ----HHHHHHHHh--------------cCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 000112111 1235 99999999999999998887655443
No 245
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-12 Score=135.41 Aligned_cols=154 Identities=21% Similarity=0.189 Sum_probs=111.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.++|||..|+|||.||-+++...++.-...+|..+.|+..+.++... ..|+||||.||+.|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 37899999999999999999888877666777778887776654321 2499999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+++.+-+||||+|+...-+-..+.+| ++....|.-|+++.||+|+... ..+ ..
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r------R~V-----------s~----- 131 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR------REV-----------SK----- 131 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc------ccc-----------cH-----
Confidence 999999999999999873332222222 2222356789999999999631 011 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+--....++| ++++.+||.|++||.+.|..+..
T Consensus 132 -EEGeaFA~ehg---------------LifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 132 -EEGEAFAREHG---------------LIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred -HHHHHHHHHcC---------------ceeehhhhhhhhhHHHHHHHHHH
Confidence 11111223344 46789999999999998876644
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.4e-12 Score=160.20 Aligned_cols=153 Identities=25% Similarity=0.343 Sum_probs=108.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
..|+++|++|+|||||+|+|++.+...|...|+|...-...+.. ....++|+|+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~----------------~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY----------------KGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe----------------cCceEEEEeCCCcCCCCCCC
Confidence 44999999999999999999999999999999997764444432 3345999999998776543
Q ss_pred -----Hhhc-c-CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 905 -----RSRG-S-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 905 -----r~rg-l-~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
..+. + ..+|++|-|||+.+ ++. .....-+|...++|+|+++|.+|....+. +
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-LeR-nLyltlQLlE~g~p~ilaLNm~D~A~~~G------i------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-LER-NLYLTLQLLELGIPMILALNMIDEAKKRG------I------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-HHH-HHHHHHHHHHcCCCeEEEeccHhhHHhcC------C-------------
Confidence 1122 2 35799999999976 222 23333456678999999999999852100 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.-....+-..| .+|+||+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~~~L------------------GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLSKLL------------------GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHHHHh------------------CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 00011111111 279999999999999999998876543
No 247
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.38 E-value=7.3e-12 Score=137.22 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=104.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~--- 902 (1415)
+.|+|+|.+|+|||||+++|++...... +.++. +.+..+... ..+.. ...+.++||||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~-----~~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKR-----TPYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCc-----eeeec---CCCCCceEEeCCCCCcccCCH
Confidence 4599999999999999999997543211 11111 100000000 00000 012469999999975431
Q ss_pred --hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 903 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 903 --~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
-++..++..+|++|||.+ ..+......++..++..+.|+|+|+||+|+.. ++.............+...+.
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhccccccccHHHHHHHHH
Confidence 133445677898888754 45777777788888888999999999999952 111000000000011122222
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC--CCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~--tGeGI~dLl~~L~~l~~~~ 1037 (1415)
. .+...+...|+ ...+||.+|+. .+.|++.|.+.|...++..
T Consensus 143 ~---~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 143 D---NCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred H---HHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 22233333332 23589999999 7899999999888777643
No 248
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.1e-12 Score=137.54 Aligned_cols=161 Identities=21% Similarity=0.148 Sum_probs=107.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+-..|+++|..++|||.||.++....+.......|.++.-...+..+. ....+.||||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g--------------~~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG--------------KKIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC--------------eEEEEEEEEcccchhHHH
Confidence 344599999999999999999987766544433333332222221111 123599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHH-HHHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+++.++++|||+|+.+-..-..+. ++..+. ..++|+|+|.||+|+... +. +..+.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e~ 139 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKER 139 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHHH
Confidence 9999999999999999998733222211 222222 347999999999999520 00 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
++. ...++| ++++.+||++|.||.+.+..|...+..
T Consensus 140 ge~------lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 GEA------LAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHH------HHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 111 112222 689999999999999998887765443
No 249
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=7.6e-12 Score=152.88 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCcc-----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--CceEEEEEecccccCCccCC
Q 000570 888 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 888 ~~l~iIDTPGHe~-----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~IVaINKiD~~~~w~~~~ 960 (1415)
.+|.||||||... +..++...+..+|++|||||+..++.+.....++.++..+ +|+|+||||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr----- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR----- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc-----
Confidence 4699999999432 3445667889999999999999998888888999998877 599999999998531
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVT-QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~-~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+... .+...+. .|...++ ....||||||++|.|+..|+..|..
T Consensus 305 eeddkE---------------~Lle~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDAD---------------QVRALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHH---------------HHHHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111111 1111221 2222221 2347999999999999999998875
No 250
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.38 E-value=2.1e-12 Score=153.10 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=110.6
Q ss_pred ccCCC-ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 822 NLRSP-ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~p-iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.+|.. .|+|+|.+|+|||||||+|++...+ .....|+|.++---++. +++..+.|+||.|..
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~----------------i~G~pv~l~DTAGiR 276 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN----------------LNGIPVRLVDTAGIR 276 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE----------------ECCEEEEEEecCCcc
Confidence 34544 3999999999999999999987654 34456777776544443 334469999999954
Q ss_pred chhhH-------Hh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 900 SFTNL-------RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 900 ~F~~l-------r~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.-... |. ..+..||++|||+|+++++..+....+. +...+.|+|+++||+|+...|..
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------- 342 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------- 342 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc-------------
Confidence 32222 22 3456799999999999988877777777 55667899999999999743210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
. .+ . +....+++++||+||+||..|...|..++.
T Consensus 343 ------------~----~~-~-------------~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 ------------E----SE-K-------------LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ------------c----hh-h-------------ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 00 0 012348999999999999999998876553
No 251
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.36 E-value=6.7e-12 Score=141.17 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F----- 901 (1415)
.|+|+|++++|||||+++|++.....+...+.|.++....+ .+....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~----------------~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVL----------------EYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEE----------------EECCeEEEEEECCCcccccccch
Confidence 48999999999999999999875443333333322211111 122345899999997543
Q ss_pred --hhHHhhccCcccceEEEEeccC
Q 000570 902 --TNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 902 --~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
.......++.+|++|+|+|+.+
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 2334567888999999999865
No 252
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.36 E-value=4.6e-12 Score=141.80 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=78.2
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
..+.+|+|+|++|+|||||++.|++..... .+....|.+.+. ......++|+||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i~---------------~~~~~~i~~vDtPg~~--- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITVV---------------TGKKRRLTFIECPNDI--- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEEE---------------ecCCceEEEEeCCchH---
Confidence 344569999999999999999998641110 000011110000 0123469999999975
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEE-EEEecccc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 953 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiD~~ 953 (1415)
......+..+|++|||+|+..|+..++..++..+...++|.+| |+||+|++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 2334456889999999999999999999999999999999654 99999986
No 253
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.36 E-value=4.7e-12 Score=133.82 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=91.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+.+++...+..... + ..+.+... ..+.. ....+.||||+|...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~---~-~~~~~~~~--------i~~~~----~~~~l~i~D~~g~~~~----- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES---P-EGGRFKKE--------VLVDG----QSHLLLIRDEGGAPDA----- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC---C-CccceEEE--------EEECC----EEEEEEEEECCCCCch-----
Confidence 48999999999999999988665432211 1 01111100 00000 0124899999999753
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+.+..+|++|||+|+++--.-+.. .++..+.. .++|+|||.||+|+... +...+ ...
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~~--- 122 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DDA--- 122 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CHH---
Confidence 234568999999999885544443 22333332 35799999999997310 00000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
....|... ...+++++|||++|.||.+++..+..
T Consensus 123 ----~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 123 ----RARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred ----HHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 01112211 02368999999999999999988764
No 254
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.34 E-value=2.6e-12 Score=131.02 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=110.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.-...|.|+|..|+|||+||-++....+.......|..++-...+.++..+ ..|.||||.|++.|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhh
Confidence 344569999999999999999999887776655555555544444433322 359999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++..+++.+-++|||+|+...-+-..+.+| ..+..+ ++-.++|.||||...+..
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~-------------------- 134 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV-------------------- 134 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc--------------------
Confidence 9999999999999999999874433333443 233333 356678999999842100
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.-.+.|+..... ..+-|+.+||+|.+||...+..|+.-
T Consensus 135 -----------V~reEG~kfAr~-------h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 135 -----------VDREEGLKFARK-------HRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -----------ccHHHHHHHHHh-------hCcEEEEcchhhhccHHHHHHHHHHH
Confidence 001112211111 23679999999999999999887653
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.34 E-value=3.8e-12 Score=127.05 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=75.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
|+|+|.+|+|||||+++|++.+. ..+...+.|++.....+.+ ....+.|+||||...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----------------NNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----------------TTEEEEEEESSSCSSSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----------------ceeeEEEEeCCCCcccchhhH
Confidence 89999999999999999997643 3344455565552222222 223478999999643
Q ss_pred ---hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEe
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINK 949 (1415)
+.....+.+..+|++|+|||+.+....+....++.|+ .+.|+|+|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2223445558899999999988855555667777786 88999999998
No 256
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.34 E-value=1.4e-11 Score=135.04 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=69.7
Q ss_pred ceeEEeCCCCCHHHHHH-HHHcCccccccc-CceeEeece---eEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 827 ICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd-~L~~t~v~~gea-gGITq~iga---~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.|+|+|+.++|||||+. ++.+..+..+.. .....++|. +.............+ .-....|.||||+|++.+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~----~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV----DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee----CCEEEEEEEEeCCCChhh
Confidence 49999999999999996 554433321110 111122221 100000000000000 011235999999998753
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~ 953 (1415)
++...++.+|++|||+|+.+...-+... ++..++. .++|+|||.||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556788999999999998744333332 2333433 368999999999985
No 257
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.29 E-value=2.8e-11 Score=133.64 Aligned_cols=174 Identities=22% Similarity=0.177 Sum_probs=110.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..|+|||||+++|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999988877655555443333222211100 1248999999999999999
Q ss_pred hhccCcccceEEEEeccC--CCChhHHHHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
..+...++++|+|+|... ....-+..++..+... ++|+|++.||+|+...+ .....+..+ +.
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~------~~~~~~~~~-------~~ 138 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ------SSSEEILNQ-------LN 138 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch------hHHHHHHhh-------hh
Confidence 999999999999999985 3444455555555553 48999999999996421 111111000 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC--CCCChhhHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~--tGeGI~dLl~~L~~l~~~ 1036 (1415)
.....+....+... .......++.+|+. ++.||..++..++..+..
T Consensus 139 ----~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 139 ----REVVLLVLAPKAVL------PEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ----cCcchhhhHhHHhh------hhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 00000000000000 00012238899999 999999999888776643
No 258
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.29 E-value=2.1e-11 Score=125.43 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=107.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|...|.|+|..|+|||||+.+|.+.... +|...+|+-.-. ..++...|+|||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 3455999999999999999999875422 232233321111 124456799999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC-ChhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+..++..+|++|+|||..+.. +..+...|..| +..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999997743 34455555444 346789999999999963210
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...|...|.-..+ .. ...+++|-+||.||+++..-+.||+.-+
T Consensus 135 ----~~~i~~~~~L~~l-----~k----s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 135 ----LEEISKALDLEEL-----AK----SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ----HHHHHHhhCHHHh-----cc----ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 0111111110001 00 2457999999999999888888776543
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=2.2e-11 Score=135.59 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=116.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
...+.+|.|||.+|+|||||+|+|..+++..-. ++|++.-+.... ...+....++||||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345555779999999999999999977665322 222222111110 0123346799999999876
Q ss_pred ------hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHh--cCCceEEEEEecccc---cCCccCCChhHHHHHH
Q 000570 901 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDRL---YGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 901 ------F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~--~~vP~IVaINKiD~~---~~w~~~~~a~~~~~l~ 969 (1415)
+..+....+...|++++++++.+..-......|+.+.. .+.|+|++||.+|+. ++|....+.+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~---- 176 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP---- 176 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH----
Confidence 67777778888999999999998776666777766554 346999999999984 457654433321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.+.+.+..+...+...+. ..-||+.+|+..++|+..|+..|+..++
T Consensus 177 ----a~~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ----AIKQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 112222223333322222 1248999999999999999999887654
No 260
>COG2262 HflX GTPases [General function prediction only]
Probab=99.27 E-value=1.9e-11 Score=142.71 Aligned_cols=154 Identities=25% Similarity=0.301 Sum_probs=99.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe---- 899 (1415)
.-|.|+++|.+|+|||||+|+|++..+.... ++.+|-.|+.. ...+ ..+..++|.||-|+-
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d------~LFATLdpttR----~~~l-----~~g~~vlLtDTVGFI~~LP 255 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVAD------QLFATLDPTTR----RIEL-----GDGRKVLLTDTVGFIRDLP 255 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccc------cccccccCcee----EEEe-----CCCceEEEecCccCcccCC
Confidence 3466999999999999999999976554322 23333333211 1111 113569999999953
Q ss_pred -----chhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 900 -----SFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 900 -----~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+|.... .-...+|++|+|||+++.. ..|-..+...|... .+|+|+|+||||++.+ ..
T Consensus 256 ~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------- 321 (411)
T COG2262 256 HPLVEAFKSTL-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------- 321 (411)
T ss_pred hHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh-------
Confidence 343332 3456799999999999853 23333344555554 4799999999998731 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
+...+.. .....|++||++|+||..|+..|...++.
T Consensus 322 ---------------~~~~~~~---------------~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ---------------ILAELER---------------GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ---------------hhhhhhh---------------cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0111110 00158999999999999999988776653
No 261
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.7e-11 Score=129.76 Aligned_cols=161 Identities=18% Similarity=0.169 Sum_probs=111.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+++|.+++|||-||.+++...+.......|...+....+.++. +.....||||.|++.|..+.+.
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccch
Confidence 89999999999999999998887766655555544333222221 1234899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
+++.+-+||||+|+....+-+.. .+|..|+. .++++++|.||+||..- ...+
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-raV~----------------------- 138 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-RAVP----------------------- 138 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-cccc-----------------------
Confidence 99999999999999874433322 22345554 47899999999999520 0000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1040 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e 1040 (1415)
.+--..|.+. ....++.+||+.+.|+...+..++..+-..+..
T Consensus 139 te~~k~~Ae~--------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 139 TEDGKAFAEK--------------EGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred hhhhHhHHHh--------------cCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 0111122221 235899999999999999998776655444433
No 262
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.5e-11 Score=120.43 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=105.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|+.|+|||.|+.+++.+-+..|....|..+.-.-.+.+.. ....|.||||.|++.|..++.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g--------------ekiklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG--------------EKIKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC--------------eEEEEEEeeccchHHHHHHHH
Confidence 489999999999999999999888876544333222111111111 112499999999999999999
Q ss_pred hccCcccceEEEEeccCCCC----hhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~----~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+++.++.+|||+|++.-.. |....-|..-...++--|+|.||+|+... ..+
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr----------rev-------------- 130 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR----------REV-------------- 130 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh----------hhh--------------
Confidence 99999999999999987433 33333333334456778899999998520 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+-..|.+. .+.-++.+||+..+|+..|+..+...+
T Consensus 131 p~qigeefs~~--------------qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 131 PQQIGEEFSEA--------------QDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hHHHHHHHHHh--------------hhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 11122233322 123467899999999999987765433
No 263
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.24 E-value=5.4e-11 Score=135.30 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=98.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 901 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-- 901 (1415)
-.|.|+|.|++|+|||||+.+|++..+.....+-+|..|..-+|. +.+..+.+|||||.-+-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe----------------~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE----------------RGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee----------------cCCceEEEecCCcccCCCh
Confidence 345599999999999999999998876554444445333332332 22345999999995432
Q ss_pred h--hH----Hhhcc-CcccceEEEEeccC--CCChhHHH-HHHHHH-hcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 902 T--NL----RSRGS-GLCDIAILVVDIMH--GLEPQTIE-SLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 902 ~--~l----r~rgl-~~aDiaILVVDa~~--Gv~~QT~E-~l~llk-~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
. |. ...++ .+.+++||++|.+. |....... .|..++ .++.|+|+|+||+|..+.|
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e-------------- 296 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE-------------- 296 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh--------------
Confidence 1 11 11222 34788999999864 55433222 233333 3457999999999987421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.+..+...+...|. ...+-+|+..|.+++.+...+.......
T Consensus 297 -----------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 297 -----------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred -----------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 22333333433332 2345678888888887777766554433
No 264
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.5e-11 Score=120.50 Aligned_cols=165 Identities=20% Similarity=0.193 Sum_probs=113.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.+.|||...+|||+||-+.....++..-.+.+..+ |...++...+. -..+.||||.|++.|..++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-----FKvKTvyr~~k---------RiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-----FKVKTVYRSDK---------RIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-----EEEeEeeeccc---------EEEEEEEecccchhhhHHHH
Confidence 48999999999999999999887764332222222 11112111111 12499999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+++.||++|+.+--.-...+.| -++ ...+.|+|+|.||||+... + +. .
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----R--------------vi-----s 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----R--------------VI-----S 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----e--------------ee-----e
Confidence 999999999999999874332222222 222 3457899999999999531 0 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
..+.+....+.| +.+|.+||+.+.||.+++..|+..+...|.+.+.
T Consensus 146 ~e~g~~l~~~LG---------------fefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLG---------------FEFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhC---------------hHHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 112222233334 3688999999999999999999988888877653
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.22 E-value=1.3e-10 Score=127.15 Aligned_cols=111 Identities=22% Similarity=0.178 Sum_probs=80.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~- 903 (1415)
.|+|+|++|+|||||+|.|++..+.... ..|.|.++..+...+ .+..|+||||||..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4899999999999999999987654322 345665544333322 234699999999765521
Q ss_pred ------HH----hhccCcccceEEEEeccCCCChhHHHHHHHHHhc-C----CceEEEEEeccccc
Q 000570 904 ------LR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 954 (1415)
Q Consensus 904 ------lr----~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~----vP~IVaINKiD~~~ 954 (1415)
.. ......+|++|||+++.+ +.......+..++.. + .++||++|+.|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 11 123456899999999988 888888888777653 3 58999999999873
No 266
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1e-10 Score=118.35 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=104.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
++|+|+.|+|||-||.++....+.+.....|..++|.-.+.+.. +...|.||||.|++.|......
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtRs 77 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTRS 77 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHHH
Confidence 89999999999999999998777655544555555554443322 2235999999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHH-H---HHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
+++.+-+++||+|+...-.-.....| . .|...++-+|++.||-|+-.. +.-.
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vt-------------------- 133 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVT-------------------- 133 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhh--------------------
Confidence 99999999999999874333332222 2 333456778889999998521 1100
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+....|.. ...+.+..+||+||+||.+.+-.+..
T Consensus 134 -----flEAs~Faq---------Enel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 134 -----FLEASRFAQ---------ENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -----HHHHHhhhc---------ccceeeeeecccccccHHHHHHHHHH
Confidence 111111111 12357899999999999987765543
No 267
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.21 E-value=6.3e-11 Score=130.50 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=80.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+......+|..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999877665433333222211111111000 000112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh----------------------cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----------------------~~vP~IVaINKiD~~ 953 (1415)
..++.+|++|||+|+++.-.-+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999885443333333 22221 258999999999986
No 268
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.21 E-value=5.3e-11 Score=112.91 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=67.0
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+ ++.+.||||+|+.|.|++|+.+++ |++.++|.|+|.||++++++|.+|.+|++|||.|.+++ +|.
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~----------d~~ 77 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN----------DIK 77 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc----------cCC
Confidence 554 245789999999999999999997 88889999999999999999999999999999999875 688
Q ss_pred CCCeEEE
Q 000570 1373 IEDELVS 1379 (1415)
Q Consensus 1373 ~~d~l~s 1379 (1415)
.||+|.+
T Consensus 78 ~Gdvi~~ 84 (84)
T cd03692 78 VGDIIEA 84 (84)
T ss_pred CCCEEEC
Confidence 8998853
No 269
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=2.7e-11 Score=137.87 Aligned_cols=127 Identities=23% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCcchhhHHh------hccCc--ccceEEEEeccCCCChhHHHHHHHHH-----hcCCceEEEEEeccccc
Q 000570 888 PGLLVIDTPGHESFTNLRS------RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~------rgl~~--aDiaILVVDa~~Gv~~QT~E~l~llk-----~~~vP~IVaINKiD~~~ 954 (1415)
..+.||||||+..+...+. +.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432211 11222 89999999999988888877665543 57899999999999973
Q ss_pred CCccCCChhHHHHHHhhh---HHHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 955 GWKTCRNAPIVKAIKQQN---TDVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 955 ~w~~~~~a~~~~~l~~q~---~~v~~ef~~-------~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
.... ..+.... ..+...+.. -...+...+.. .+...++|++||.++.|+.
T Consensus 177 ------~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 ------EEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred ------chhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1111 1111111 111111110 01111112222 2234689999999999999
Q ss_pred hHHHHHHHHH
Q 000570 1025 DLLLLLVQWT 1034 (1415)
Q Consensus 1025 dLl~~L~~l~ 1034 (1415)
+|+.+|..++
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9999987655
No 270
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=1e-10 Score=131.82 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=92.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
-|+++|.+++||||||++|....-. .....++..+||..+.. . + ..|++-|.||.-.=
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd--d-------------f--~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD--D-------------F--SQITVADIPGIIEGAHM 260 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc--c-------------c--ceeEeccCccccccccc
Confidence 3889999999999999999876543 33334444556633221 1 1 13999999994211
Q ss_pred ----hhHHhhccCcccceEEEEeccCCC--C-hhHHH-HHHHHHhc-----CCceEEEEEecccccCCccCCChhHHHHH
Q 000570 902 ----TNLRSRGSGLCDIAILVVDIMHGL--E-PQTIE-SLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 902 ----~~lr~rgl~~aDiaILVVDa~~Gv--~-~QT~E-~l~llk~~-----~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
--...|.+-.|++++||||++.+. . -|++. .+..|..+ ..|.+||+||||++.+ .
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e------- 328 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----E------- 328 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----H-------
Confidence 111223444599999999998872 2 22222 22333332 4699999999998521 0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 329 -----------~~~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 329 -----------KNLLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred -----------HHHHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 11122222222 1125999999999999999887643
No 271
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=5.2e-11 Score=120.07 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=106.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
.+|+|.+++|||+|+-+++...++......|..++-.-.++++.. ...|.||||.|++.|..+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~--------------~VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGD--------------RVKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCc--------------EEEEEEeecccHHHHHHHHHH
Confidence 689999999999999999987776544333333322222222211 135999999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhH-HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQT-IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.+.++++|+|+|...|-.-.. ..+|..++.. .+|-|+|.||.|... +.. +. -.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----Rrv-----V~-------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRV-----VD-------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----cee-----ee-------------hH
Confidence 9999999999999998765433 3444444432 479999999999863 110 00 00
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........ ..+.+|.+||+...|+..++..|..+.
T Consensus 134 dAr~~A~~---------------mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 134 DARAFALQ---------------MGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHHHHHh---------------cCchheehhhhhcccchHHHHHHHHHH
Confidence 11111112 236799999999999999988776544
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.19 E-value=1.9e-10 Score=132.63 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=76.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccccccc----------CceeEeeceeEecccccceeeeecccccccCCCCEEEEeC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 895 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~gea----------gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDT 895 (1415)
..|+|+|+.|+|||||+++|++..+..... .+++.+.....+.... ....|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g--------------~~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG--------------VKLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC--------------EEEEEEEEec
Confidence 358999999999999999999877653321 1111111111111110 0024999999
Q ss_pred CCCcchhhH--------------------------HhhccC--cccceEEEEecc-CCCChhHHHHHHHHHhcCCceEEE
Q 000570 896 PGHESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 946 (1415)
Q Consensus 896 PGHe~F~~l--------------------------r~rgl~--~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 946 (1415)
||+.++.+. |...+. .+|++|++++.. +++.+..++.+..+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997665331 101222 478889999876 5898999999999885 7999999
Q ss_pred EEecccc
Q 000570 947 LNKVDRL 953 (1415)
Q Consensus 947 INKiD~~ 953 (1415)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999996
No 273
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.18 E-value=6.8e-11 Score=117.93 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=69.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc----ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~----~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.|+|+|+.|+||||||++|.+.... .....+.+..+....+... ...+.|+|++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD----------------RQSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE----------------EEEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC----------------ceEEEEEecCccceec
Confidence 3899999999999999999977655 1112222222211111111 1138999999999888
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-------HHHHh--cCCceEEEEEecc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-------NLLKM--RNTEFIVALNKVD 951 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-------~llk~--~~vP~IVaINKiD 951 (1415)
......+..+|++|||+|+.+ +.+...+ ..+.. .++|+|||.||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSD---PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCG---HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCC---hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 766666888999999999987 4444332 22322 4599999999998
No 274
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.6e-11 Score=125.03 Aligned_cols=155 Identities=25% Similarity=0.237 Sum_probs=108.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|--++||||+|.+|....+... ...||.. ++. +.|++..+++||..|+..+..++.
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfn---VE~-----------v~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFN---VET-----------VEYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-----CCccccc---eeE-----------EEEcceEEEEEecCCCcccccchh
Confidence 399999999999999999976554321 1222211 111 124445699999999999999999
Q ss_pred hccCcccceEEEEeccCCCC-hhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE-PQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~-~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..++++|||||..+-.. +.+.+ ...++.. .++|++|+.||.|+.+..
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------- 134 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------- 134 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------------------------
Confidence 99999999999999987421 22333 3333332 468999999999997421
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+|...|....+.. ....+-.++|.+|+|+.+-+++|...+.
T Consensus 135 s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1234445555444432 3346889999999999999999876543
No 275
>PLN00023 GTP-binding protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=135.25 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=81.8
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
......|+|||+.++|||||+.+|.+..+......+|..++....+.+.........+... ......|.||||+|++.|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhh
Confidence 3445569999999999999999999876654333333222211111111000000000000 001124899999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHH----HHHHhc---------------CCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMR---------------NTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~---------------~vP~IVaINKiD~~ 953 (1415)
..++...++.+|++|||+|+++ ..+.+.+ ..+... ++|+|||.||+|+.
T Consensus 97 rsL~~~yyr~AdgiILVyDITd---r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQ---RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 9999999999999999999987 3343332 333321 48999999999985
No 276
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6e-11 Score=123.25 Aligned_cols=161 Identities=23% Similarity=0.224 Sum_probs=105.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-ccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
.|+|+|.-++||||||.++-..-. .-+.. .-||..+|...- ...+.+..|.|||..|++....
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--------------~i~v~~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--------------TIEVCNAPLSFWDLGGQESLRS 84 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--------------ceeeccceeEEEEcCChHHHHH
Confidence 389999999999999999853221 11111 113333322110 1112234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCC--CC---hhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHG--LE---PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~G--v~---~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++..++..|+++|+|||+.+. ++ .+-...+..=...++|+++.+||-|+.. +--
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~~-------------- 143 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AME-------------- 143 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hhh--------------
Confidence 999999999999999999873 21 1112223333456899999999999852 100
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+..+.... + + ...+++++.||||++|+||.+-+.|++..+.
T Consensus 144 -~~El~~~~~~~-e--~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 144 -AAELDGVFGLA-E--L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred -HHHHHHHhhhh-h--h---------cCCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 01122222221 1 1 2346789999999999999999999886554
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.14 E-value=1.5e-10 Score=124.56 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|+.|+|||+|+..|.+....... ..+...+ ++.+ ..-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~-~~~~---------------~~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENNI-AYNV---------------NNSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEE-ECCG---------------SSTCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCCc-eEEe---------------ecCCCCEEEEEECCCcHHHHH
Confidence 3567999999999999999999876332111 0011111 0111 011235699999999998876
Q ss_pred HHhh---ccCcccceEEEEeccCCCChh---HHHHHH-HH---H--hcCCceEEEEEecccc
Q 000570 904 LRSR---GSGLCDIAILVVDIMHGLEPQ---TIESLN-LL---K--MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 904 lr~r---gl~~aDiaILVVDa~~Gv~~Q---T~E~l~-ll---k--~~~vP~IVaINKiD~~ 953 (1415)
.... .+..+-++|||||+.. +..+ +.++|. +| . ..++|++||+||.|+.
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 5444 3778999999999864 2222 223321 11 1 2468999999999996
No 278
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.13 E-value=4.6e-10 Score=128.23 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=100.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+++|.+++||||||+++.... +..+...+++..+|...+.. ...++|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-----------------~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-----------------GESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-----------------CCcEEEecCcccccccccC
Confidence 8899999999999999998765 44555555556666655421 13599999999321
Q ss_pred --hhhHHhhccCcccceEEEEeccCCC--C-hhHHHHH-HHHHhc-----CCceEEEEEecccccCCccCCChhHHHHHH
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMHGL--E-PQTIESL-NLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~Gv--~-~QT~E~l-~llk~~-----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
.-.-..|.+..|-++|+|||++.-- . .+.+..| ..|..+ +.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 0111223444589999999997432 1 2333333 344443 5799999999997521
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l 1038 (1415)
.+.+..+...|.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 112222333333221 1123334999999999999999988887654
No 279
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.12 E-value=1.2e-10 Score=117.65 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=105.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
++++|-.++|||||++.+..+.+... +..+.|+....+. -....|.+||.||+..|..|+.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~t--------------kgnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVT--------------KGNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEec--------------cCceEEEEEecCCCccHHHHHHH
Confidence 78999999999999998865433211 2223333322211 11235899999999999999999
Q ss_pred ccCcccceEEEEeccCCC-ChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGL-EPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv-~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
+.+.|+++|+|||+.+.- -+..+.-| .+|.. .++|++|..||+|+.+. |..
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~------------ 140 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA------------LSK------------ 140 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc------------ccH------------
Confidence 999999999999998721 12333333 33332 46899999999999642 100
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+ ..+.||..- ....+.++.||++.-.||+-+++||+...
T Consensus 141 -~~l---i~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 -IAL---IERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred -HHH---HHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 112 223344321 13568999999999999999999998754
No 280
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=2.2e-10 Score=116.62 Aligned_cols=158 Identities=22% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
++.|+++|..=+|||+|+-++....+....... .+ +.|... .++ ..-.-..|+||||.|++.|..+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsT--lQ--ASF~~k--------k~n--~ed~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLST--LQ--ASFQNK--------KVN--VEDCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHH--HH--HHHhhc--------ccc--cccceeeeeeeeccchHhhhcc
Confidence 345899999999999999988766554221111 11 111110 000 0001135999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH-HHHH-hcC--CceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MRN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-~~~--vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
-.-+++.+|++|||+|+.+.-.-|-...| ..|+ +++ +.++||.||||+... + .+ ..
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R------~V------t~---- 138 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R------QV------TR---- 138 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h------hh------hH----
Confidence 99999999999999999987666665555 2333 333 689999999998521 0 00 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... ...++.+||+.+.||.+||..|...+
T Consensus 139 ---qeAe~YAesv---------------GA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 139 ---QEAEAYAESV---------------GALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred ---HHHHHHHHhh---------------chhheecccccccCHHHHHHHHHHHH
Confidence 0000001111 13578999999999999998876543
No 281
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.09 E-value=2.9e-10 Score=124.58 Aligned_cols=160 Identities=19% Similarity=0.130 Sum_probs=105.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+++|..|+|||+|+-++++..+.....+.|- +.. .+...+. -....|.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y----------~k~~~v~----~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSY----------RKELTVD----GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccc----------eEEEEEC----CEEEEEEEEcCCCcccChH
Confidence 445699999999999999999998776654333332 111 1111111 1123588999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHH-HHHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
|+..++...|+.|||+++++--.-+.... +.++ + ...+|+|+|.||+|+... +.-+ .+
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~-------------~e 129 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVS-------------EE 129 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccC-------------HH
Confidence 99999999999999999988433222211 1222 2 234799999999999631 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
-+. .| ... -.++++.+||....+|.++|..|+..+..
T Consensus 130 eg~-------~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 130 EGK-------AL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHH-------HH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 000 11 111 12679999999999999999998876543
No 282
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-09 Score=127.92 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=87.2
Q ss_pred cCCCCcccccccCCCce-eEEeCCCCCHHHHHHHHHcC--ccc-ccccCceeEeeceeEecccccceeeeecccccccCC
Q 000570 812 VDATPKQAEENLRSPIC-CIMGHVDTGKTKLLDCIRGT--NVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 812 ~~~~~~~~~~~lR~piV-~IlGhvdaGKTTLLd~L~~t--~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
..++-.+++..+.+|.| +|||++|+|||||+..|... ... ....|.||.-.| +.
T Consensus 55 hVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg----------------------K~ 112 (1077)
T COG5192 55 HVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG----------------------KT 112 (1077)
T ss_pred ccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec----------------------ce
Confidence 34566677777777765 59999999999999988632 111 112233443222 12
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEE-EEEeccccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRLY 954 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiD~~~ 954 (1415)
+.|+|+.+| .+. +.+...+..+|++||+||++-|+.-.|.+.|++|...+.|.|+ |++.+|+..
T Consensus 113 RRiTflEcp--~Dl-~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 113 RRITFLECP--SDL-HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eEEEEEeCh--HHH-HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 459999999 333 3444567889999999999999999999999999999998665 899999963
No 283
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.08 E-value=7.8e-10 Score=129.59 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=60.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEecc----cccceeeeecccc---cccCCCCEEEEeCCCC
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPA----ENIRERTRELKAN---ATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~----~~i~~~t~~v~~~---~~~~~~~l~iIDTPGH 898 (1415)
|+|+|.+++|||||+++|++..+......+.| ..+|..+++. ..+...+. .... ..+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCN-PRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhc-ccccccccCcCcceEEEEECCCC
Confidence 68999999999999999998776544444444 5666666532 11111110 0000 0112235999999996
Q ss_pred ----cchhhHHh---hccCcccceEEEEecc
Q 000570 899 ----ESFTNLRS---RGSGLCDIAILVVDIM 922 (1415)
Q Consensus 899 ----e~F~~lr~---rgl~~aDiaILVVDa~ 922 (1415)
..+..+.. ..++.||++|+|||+.
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 44554433 3588899999999996
No 284
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8.6e-10 Score=130.64 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.+.|+|+|.+|+|||||||+|.+..+. .+...|+|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 355999999999999999999987654 45667777775444433 3456799999999644
Q ss_pred -----hhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhc------------CCceEEEEEecccccCCccCCCh
Q 000570 901 -----FTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 901 -----F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~------------~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
..-+|. ..+..+|+++||||++.+...+.....+.|... ..|+|+++||+|+.......+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 222222 456779999999999998887777666655432 25889999999987432111111
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEE-eCCCCCCCChhhHHHHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIV-PTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iV-pvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
++ .|.....++.++++ .+|++|++|+..|...|...+
T Consensus 412 ~~-----------------------------------~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV-----------------------------------VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce-----------------------------------eccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 10 00001112344544 499999999999998876543
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=8.6e-10 Score=129.46 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
.+..++||||+|...-... .+..+|++|||++...|..-|.... . ...+..|||+||+|++.. ...
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~-g---i~E~aDIiVVNKaDl~~~------~~a- 212 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK-G---IMELADLIVINKADGDNK------TAA- 212 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh-h---hhhhhheEEeehhcccch------hHH-
Confidence 3467999999997622211 3567999999987555544444321 0 122234899999999731 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+..+...|.... .. ..+...||++|||++|.||++|+..|..+++
T Consensus 213 --------------~~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 --------------RRAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------------HHHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 011112222222110 00 0012258999999999999999999988765
No 286
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.03 E-value=4.3e-10 Score=126.82 Aligned_cols=133 Identities=19% Similarity=0.287 Sum_probs=67.1
Q ss_pred CEEEEeCCCCcchhhHHhhcc--------CcccceEEEEeccCCCChhHHHHH-----HHHHhcCCceEEEEEecccccC
Q 000570 889 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 955 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl--------~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiD~~~~ 955 (1415)
.+.|+||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ..+...++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999988776655443 334468899999876666555433 2233468999999999999742
Q ss_pred CccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 956 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 956 w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+ ..+.-........+...+......+...+... -.+++...+++|+|+.+++|+..|+..+-..++
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 1 11111111111111111110111222222111 013344448999999999999999988766543
No 287
>PTZ00099 rab6; Provisional
Probab=99.02 E-value=1.3e-09 Score=117.69 Aligned_cols=109 Identities=21% Similarity=0.135 Sum_probs=75.4
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHH-HHHHHH-Hh--cCCceEEEEEecccccCCccCCChhH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~ll-k~--~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.|.||||||++.|..++...++.+|++|||+|+++...-+.. .++..+ .. .++|+|||+||+|+... .....
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVTY 105 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCCH
Confidence 589999999999999999999999999999999884332222 233323 22 35799999999998521 00000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.......... .+.++++||++|.||.+++.+|...++
T Consensus 106 -------------------~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 -------------------EEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred -------------------HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0011111111 146899999999999999999886553
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.01 E-value=7e-10 Score=109.74 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=95.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC----Ccchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----He~F~ 902 (1415)
.|++||.+|+|||||+++|++..+.... ||-+ .|+ .=..||||| |..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK----TQAv---------------------e~~--d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK----TQAV---------------------EFN--DKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc----ccee---------------------ecc--CccccCCchhhhhhhHHH
Confidence 3899999999999999999875443211 2211 111 123699999 44443
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.-....+..+|++++|-.++++.++ -.-.++.....|+|-+++|+|+.. ...
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae-------------------------d~d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE-------------------------DAD 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc-------------------------hHh
Confidence 3344456678999999999985432 233445556678999999999962 123
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+..+...|.+.| --+||.+|++...||.+|+..|..
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 455666777776 238999999999999999988764
No 289
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.00 E-value=3.5e-09 Score=119.26 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=84.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeec-----------eeEecccc--------cc----eeee-
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-----------ATYFPAEN--------IR----ERTR- 877 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~ig-----------a~~~~~~~--------i~----~~t~- 877 (1415)
.+..|.|+|+|+.++||||||++|.+..+.....|.+|.... +.++.... +. ..+.
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 367788999999999999999999986532222233331111 11110000 00 0000
Q ss_pred ------eccc-----cc-ccCCCCEEEEeCCCCcch-------------hhHHhhccCc-ccceEEEEeccCCCChhH-H
Q 000570 878 ------ELKA-----NA-TLKVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 930 (1415)
Q Consensus 878 ------~v~~-----~~-~~~~~~l~iIDTPGHe~F-------------~~lr~rgl~~-aDiaILVVDa~~Gv~~QT-~ 930 (1415)
.+.. .. .-..+.|+||||||.... ..+...++.. .+++|+|||+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 0000 00 012367999999997522 2345566664 569999999999998877 5
Q ss_pred HHHHHHHhcCCceEEEEEecccc
Q 000570 931 ESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 931 E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
+..+.+...+.|+|+|+||+|.+
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 78888888999999999999997
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.99 E-value=3.2e-09 Score=120.55 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=55.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-cchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH-e~F~~lr 905 (1415)
.|+++|.+++||||||++|+++.... +.|.|.+-. .+.....|++..|.|+|+||. +.++.-+
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~sev----------a~y~FTTl~------~VPG~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEV----------ADYPFTTLE------PVPGMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccc----------cccCceecc------cccceEeecCceEEEEcCcccccCcccCC
Confidence 39999999999999999999875433 333332111 123344577778999999994 3333333
Q ss_pred ------hhccCcccceEEEEecc
Q 000570 906 ------SRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 906 ------~rgl~~aDiaILVVDa~ 922 (1415)
...++.||++|+|+|+.
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVF 151 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecC
Confidence 33467799999999986
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.99 E-value=1.2e-09 Score=120.67 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=89.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-------cccccC-cee----EeeceeEecccccceeee---ec---cccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-------QEGEAG-GIT----QQIGATYFPAENIRERTR---EL---KANATL 885 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-------~~geag-GIT----q~iga~~~~~~~i~~~t~---~v---~~~~~~ 885 (1415)
..|+|+|+|+.|+|||||+++|+.... ..+..+ ++. .+.|+..+......-.+. .+ ......
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 456799999999999999999975311 011110 000 000110000000000000 00 000111
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
..+.+.||+|.|.-... .......++.|+|||+.++...+. ......+.|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 24579999999932111 111223566788999987654322 2223356789999999999631 0000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+..+...+... ...+|++++||++|.||..|+.++..+
T Consensus 168 -----------------~~~~~~~l~~~-------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKI-------------NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHh-------------CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11122222221 123689999999999999999998753
No 292
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-09 Score=110.32 Aligned_cols=158 Identities=24% Similarity=0.232 Sum_probs=103.7
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|--.|.|||-.|+||||++-++--.++... -..||. ..+ ++.|++-.+.+||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigf---nve-----------~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGF---NVE-----------TVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCc---Ccc-----------ccccccccceeeEccCcccccH
Confidence 334489999999999999887754443311 011111 111 1234445699999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC--ChhHHHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv--~~QT~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++.-++..+|.+|+|||..+-- ...-.+...+|.. .+.-++|++||+|..+.
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~----------------------- 134 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA----------------------- 134 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-----------------------
Confidence 9999999999999999997632 2222333334432 45678999999998641
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
....++...|..+.|. ...+.||.+||.+|+|++..++||..-++
T Consensus 135 --~t~~E~~~~L~l~~Lk----------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 135 --LTRSEVLKMLGLQKLK----------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred --hhHHHHHHHhChHHHh----------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0011222222111111 13479999999999999999999876543
No 293
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=5.3e-09 Score=107.51 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=102.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.+.|+|..-+|||+||..++.+.++.-..+.+..+..+-.+.... .. -..|.+|||.|++.|..++.
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~p----------g~---riklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRP----------GY---RIKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCC----------Cc---EEEEEEeeccchHHHHHHHH
Confidence 378999999999999999998777654333332222211111110 00 12489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH-HHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+++++=+++||+|+++.-.-...+.|- .+.+ .++-|.+|..|+|+... +.-+
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt----------------- 135 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVT----------------- 135 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----cccc-----------------
Confidence 9999999999999998733322222221 1111 12447889999999621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
..+--.....+| +.+|.+||++|.||.+-+..|.+.+...
T Consensus 136 --~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 136 --AEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred --HHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 001111122232 5799999999999999998887655443
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=6.7e-09 Score=111.77 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|.++|..|+|||+|+-.|+...+... ...|....+.+. +....+++||.|||.+...-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r------------------~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYR------------------LGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEe------------------ecCcceEEEeCCCcHHHHHHH
Confidence 3499999999999999999987633211 011111112221 122348999999998875544
Q ss_pred hhccC---cccceEEEEeccCCCC--hhHHHHH-HHHH-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 906 SRGSG---LCDIAILVVDIMHGLE--PQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 906 ~rgl~---~aDiaILVVDa~~Gv~--~QT~E~l-~llk-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
...+. .+-.+|||||+..-.. ..+-+.+ ..|. ..++|++|+.||.|+... .+. +.+.+|
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA---kt~----~~Ir~~--- 169 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA---KTA----EKIRQQ--- 169 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc---CcH----HHHHHH---
Confidence 43333 6889999999864211 1122222 2222 345799999999999632 122 222222
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCchhhhh-------ccc-----CCC-cceeEEeCCCCCCCChhhHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLK-EQGMNTELYY-------KNK-----DRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~-e~gl~~e~~~-------~~~-----~~g-~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
++..+..++..-. ...++.+-+- ... ++. ..+.|.+.|+++| +|.++..||..
T Consensus 170 ----LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 170 ----LEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ----HHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 2222222221111 0001111110 111 222 5688999999999 78888877754
No 295
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4.8e-09 Score=105.43 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=102.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+.+|-.++||||||-+|....... ++..+|+. ++ .+.|++..+++||..|+.....++.+
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFn---ve-----------tVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFN---VE-----------TVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCcc-----ccccccee---EE-----------EEEeeeeEEeeeeccCchhhhHHHHh
Confidence 8899999999999999997543211 11222211 11 11244456999999999999999999
Q ss_pred ccCcccceEEEEeccCC--CChhHHHHHHHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
++..+-++|||||+.+. +...-.|.-.++ .+..+|++|..||.|+....+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------------------------- 135 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------------------------- 135 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------------------------
Confidence 99999999999998764 222222332333 345689999999999974321
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+|...|.-..+. +....+.|+||.+|.|+.+-|.+|.+.+
T Consensus 136 pqei~d~leLe~~r----------~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 PQEIQDKLELERIR----------DRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhcccccc----------CCccEeeccccccchhHHHHHHHHHhhc
Confidence 12233333211111 2345789999999999999888887643
No 296
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=6.2e-09 Score=104.13 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=80.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
-.|+|..|+|||.||..++...+...-...|...+|...+.+..- ...|.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq--------------kiklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ--------------KIKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc--------------EEEEEEeecccHHHHHHHHHH
Confidence 578999999999999999877665544444544555443332211 124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHH-HHH---hcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~-llk---~~~vP~IVaINKiD~~ 953 (1415)
+++.+-.+++|+|+....+.....+|. -++ ..++-++++.||.|+.
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 999999999999998744433333332 222 2355688899999985
No 297
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=107.99 Aligned_cols=155 Identities=24% Similarity=0.251 Sum_probs=106.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|-..|.++|--++||||||..|.+..+.. +|..-|+....+.. + ...+|++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~----------~---g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEY----------D---GTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEee----------c---CcEEEEEEecCCccccch
Confidence 44458999999999999999998765542 44444433222111 1 114699999999999999
Q ss_pred HHhhccCcccceEEEEeccCC--CChhHHHHHHHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+..++...|++|+|||..+- +.....++..++ +.+.+|+.|+.||.|++..
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta----------------------- 134 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA----------------------- 134 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh-----------------------
Confidence 999999999999999997763 222233333333 3466899999999999731
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+..+...|.-.|+.. ..+.|-.+||++++|+.+-+.++.
T Consensus 135 --a~~eeia~klnl~~lrd----------RswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 135 --AKVEEIALKLNLAGLRD----------RSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred --cchHHHHHhcchhhhhh----------ceEEeeeCccccccCccCcchhhh
Confidence 11223333333333321 356888999999999998887765
No 298
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.5e-09 Score=109.23 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=102.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
+..+|..|+|||++|-+.+...+...- | ..+|..+-+...+...... .....-.-.+|.||||.|++.|..++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qF---I-sTVGIDFreKrvvY~s~gp-~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQF---I-STVGIDFREKRVVYNSSGP-GGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCccccee---E-EEeecccccceEEEeccCC-CCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 578999999999999887655443211 1 1122211111100000000 0000000124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHHHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+.+-..||++|...--. -.++.+|.+|+.. +--+|++.||+|+..- ..+. .
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~----------R~Vs----------~-- 144 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ----------RVVS----------E-- 144 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh----------hhhh----------H--
Confidence 9999999999999976322 2234455555542 3358889999999620 0000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
.+.......+| +|+|.+||-||.||..-++.|+.++-..|...
T Consensus 145 -~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 145 -DQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred -HHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 69999999999999988888777665555443
No 299
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=119.14 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=99.3
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
....|+|+|+|.+|+|||||+++|+..++.... ++.++-.|+-. ...+ -.+..++|.||-|+-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h----~a~L-----psg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLH----SAHL-----PSGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhh----hccC-----CCCcEEEEeechhhhhh
Confidence 456789999999999999999999977765433 23333332211 0011 123358999999953
Q ss_pred -------chhhHHhhccCcccceEEEEeccCCCC-hhHHHHHHHHHhcCCc-------eEEEEEecccccCCccCCChhH
Q 000570 900 -------SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 900 -------~F~~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~~vP-------~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
+|..... -...+|++|.|+|++|..- .|-...+..|+..++| +|=|-||+|...++.+
T Consensus 240 LP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------ 312 (410)
T KOG0410|consen 240 LPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------ 312 (410)
T ss_pred CcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------
Confidence 3443332 3456899999999999754 5555667788888885 5567778886532100
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ . ...|++||++|.|+.+|+..+-..
T Consensus 313 --------------------------------~E---------~-n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 313 --------------------------------EE---------K-NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred --------------------------------cc---------c-CCccccccccCccHHHHHHHHHHH
Confidence 00 1 127899999999999999887543
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.88 E-value=1e-08 Score=123.68 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=60.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEeccc----ccceeeeeccc--ccccCCCCEEEEeCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAE----NIRERTRELKA--NATLKVPGLLVIDTPG 897 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~~----~i~~~t~~v~~--~~~~~~~~l~iIDTPG 897 (1415)
+.|+|+|.+++|||||+++|++..+......+.| ..+|..+++.. .+...+..... ...+....|.|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 3599999999999999999998877654444444 56666665332 11100000000 0011223589999999
Q ss_pred Cc----chhh---HHhhccCcccceEEEEecc
Q 000570 898 HE----SFTN---LRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 898 He----~F~~---lr~rgl~~aDiaILVVDa~ 922 (1415)
.. .+.. ...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2323 3334478899999999996
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.87 E-value=7e-09 Score=121.16 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
..+.+.||||||...-. ...+..+|.+++|.....|-.-+. +.. ....+|.|||+||+|++.. ...
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~-~l~~~~~ivv~NK~Dl~~~------~~~- 190 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKA-GLMEIADIYVVNKADGEGA------TNV- 190 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHH-HHhhhccEEEEEcccccch------hHH-
Confidence 35679999999965222 224566888888865543322111 111 1246899999999999631 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. +...+. ..+.. +.. ....| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 ~~-------~~~~~~-------~~l~~--l~~----~~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 TI-------ARLMLA-------LALEE--IRR----REDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HH-------HHHHHH-------HHHhh--ccc----cccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 000000 00110 000 00012 24799999999999999999987753
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=3.6e-09 Score=110.02 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=129.6
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..+--|.+.++|+|..++||||||.+++.+-+..+....| |..++.. .+ .+. .....+.+|||.|+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI----gvdfler-qi-----~v~----~Edvr~mlWdtagq 79 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----GVDFLER-QI-----KVL----IEDVRSMLWDTAGQ 79 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhcccccccccccc----chhhhhH-HH-----Hhh----HHHHHHHHHHhccc
Confidence 3344567779999999999999999999765544433333 3222211 00 111 11124789999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCCh-hHHHHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~-QT~E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+.|-.+...+++.+...|||++..+...- .|.++.+-+.. ..+|.|+|-||||++.+ +-+.
T Consensus 80 eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~~---------- 143 (246)
T KOG4252|consen 80 EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQMD---------- 143 (246)
T ss_pred hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhcc----------
Confidence 99999999999999999999998874432 23333333322 45899999999999731 1000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEE-
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLE- 1054 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlE- 1054 (1415)
...+..+...| ...++.+|++...|+..++..|..-+...+...++.+...+..-..
T Consensus 144 ----~~evE~lak~l------------------~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~ 201 (246)
T KOG4252|consen 144 ----KGEVEGLAKKL------------------HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNS 201 (246)
T ss_pred ----hHHHHHHHHHh------------------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCC
Confidence 01111222122 1356788999999999999998877766666656544332211111
Q ss_pred EEEEcCcceEEEEEEEeeEEccCCEEEEec
Q 000570 1055 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1055 vk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.+... +..+..-..+++.++++|++.+
T Consensus 202 ~~sts---p~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 202 TYSTS---PPSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred CccCC---CCcceeeeeeeecCCceeeech
Confidence 01111 1222234467888888888754
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.85 E-value=8.6e-09 Score=109.26 Aligned_cols=64 Identities=31% Similarity=0.407 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcch----hhHHhhccCcccceEEEEeccCCCChhHHHHHHH-HHhcCCceEEEEEec
Q 000570 887 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKV 950 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~l-lk~~~vP~IVaINKi 950 (1415)
..++.||||||..+. ..++...+..+|++|+|+++.+.+..+....|.. +....-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999996442 3556677899999999999999887666555554 444555788999985
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.79 E-value=8e-08 Score=109.29 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=73.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
....+.|+|||.+|+|||||+|+|++..+.. +...+.|..+..+... +.+..|+||||||...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~----------------~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT----------------VDGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCc
Confidence 3455569999999999999999999876532 2223344443322221 2234699999999765
Q ss_pred hhh--H--------HhhccC--cccceEEEEeccC-CCChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 901 FTN--L--------RSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 901 F~~--l--------r~rgl~--~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
+.. . ..+.+. ..|++|+|..++. .+.......++.+.. ++ .++|||+|++|...
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 521 0 112232 4677777765543 344555556655543 33 47999999999863
No 305
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.79 E-value=1e-08 Score=114.26 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=108.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCccc---ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 898 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH- 898 (1415)
-+.|-++++|..++|||+||+.|++.... .....|-||.|..+.+ +..++++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-------------------~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-------------------GKSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-------------------cceEEEEecCCcc
Confidence 45678999999999999999999865432 1114566776654433 235899999992
Q ss_pred ---------cchhhHHhhccC---cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 899 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 899 ---------e~F~~lr~rgl~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
.+|.++...++- ..=-++|+||+.-++++.....|.+|-..++|+.+|+||||+.. ....
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k--~~~~------ 266 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK--KVKR------ 266 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh--hccc------
Confidence 234444333221 22346788999999999999999999999999999999999862 2110
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
....+...++..|. ++... .+.-..|++.+|+.|+.|++.|+-.|.+..
T Consensus 267 ~~kKp~~~i~~~f~-------------~l~~~------~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 267 TGKKPGLNIKINFQ-------------GLIRG------VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cccCccccceeehh-------------hcccc------ceeccCCceeeecccccCceeeeeehhhhh
Confidence 00011001111111 11111 122346888999999999999887776543
No 306
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=98.76 E-value=2.1e-08 Score=97.20 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=71.3
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
+++|+|++...|.|++++++|++|+|++||+|+++ ..+.+||+|+++.+. ..+++.+++++.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988753 346799999988752 2334455566665 4
Q ss_pred ccccc-cCCCceEEeCCCccHHHHHH
Q 000570 1129 GLEHA-IAGTGLYVVGPDDDLEDVKE 1153 (1415)
Q Consensus 1129 gL~~~-~aG~~~~v~~~e~~~~~~~~ 1153 (1415)
||+.. .+|+.|+++.++..+..+.+
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 88874 89999999999887766654
No 307
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=2.9e-08 Score=109.34 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce--EEEEEecccccCCccCCChhH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~--IVaINKiD~~~~w~~~~~a~~ 964 (1415)
...++||.|.|.. ...... ...+|.+|+|||+.+|...+.. . ..++.+ ++++||+|+... ...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~----~~~-- 155 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPM----VGA-- 155 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcccc----ccc--
Confidence 3568999999931 110001 1236889999999987663221 1 123344 999999999621 000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+..+...+... + ...++|++||++|+||.+|+.+|..
T Consensus 156 -----------------~~~~~~~~~~~~--~-----------~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 156 -----------------DLGVMERDAKKM--R-----------GEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred -----------------cHHHHHHHHHHh--C-----------CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 112222233222 1 2468999999999999999998864
No 308
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.76 E-value=4.6e-09 Score=104.36 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=96.1
Q ss_pred eEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhc
Q 000570 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRG 908 (1415)
Q Consensus 829 ~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rg 908 (1415)
.++|...+|||.||-++..+.+..+. ....+|..+ +...+. ..-....|.||||.|++.|...+..+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~---fistvgid~--------rnkli~--~~~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGN---FISTVGIDF--------RNKLID--MDDKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCceecCc---eeeeeeecc--------ccceec--cCCcEEEEEEeeccchHHHhhhhHhh
Confidence 36899999999999776554443322 111122111 101111 11112359999999999999999999
Q ss_pred cCcccceEEEEeccCCCChhHHHH-HHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
++.+|..+||+|+.+...-..... |..+..+ .+.+.++.||+|+..... + ...-+.++
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v-------~~ddg~kl- 129 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------V-------KRDDGEKL- 129 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhc----------c-------ccchHHHH-
Confidence 999999999999987655444333 3444444 368889999999963210 0 00001111
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+ .+|++.+||+||.|++--+-.|..
T Consensus 130 -----a~~y---------------~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 130 -----AEAY---------------GIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred -----HHHH---------------CCCceeccccccccHhHHHHHHHH
Confidence 1112 269999999999999776655543
No 309
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.75 E-value=6e-08 Score=114.90 Aligned_cols=170 Identities=18% Similarity=0.261 Sum_probs=87.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccc-ccc-Cce---eEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEA-GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~-gea-gGI---Tq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
..|+|+|.+|+|||||+|+||+-.-.. +.+ .|+ |.....|.. .+.|.++|||.||...
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----------------p~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----------------PKFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------------------SS-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----------------CCCCCCeEEeCCCCCC
Confidence 349999999999999999999643221 111 122 222222211 1236799999999642
Q ss_pred --hh---hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEeccc-ccCCccCCChhHHHHHHhhhHH
Q 000570 901 --FT---NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 901 --F~---~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~-~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
|. -+-..++...|++|+|.+ ..+.......+..++.++.||.+|-||+|. +++-.......|.+. +
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e--~---- 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEE--K---- 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HH--T----
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHH--H----
Confidence 32 223346778998777665 345666677778888899999999999997 221100111112110 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC--CCChhhHHHHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t--GeGI~dLl~~L~~l~~ 1035 (1415)
+. ...-..++..|...|+. ..+||.||+.. ...++.|...|..-++
T Consensus 171 ~L---~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 171 LL---QEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HH---HHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HH---HHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11 11112344556555543 35788899875 4557777777765544
No 310
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.71 E-value=3.2e-07 Score=106.23 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccc-ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
....+.|+|||.+|+|||||+|+|++..+... ...+.|.+..... ..+.+..|+||||||..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------RTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE----------------EEECCeEEEEEECCCCCc
Confidence 35566799999999999999999998765321 1111111110000 012335699999999775
Q ss_pred hhhHHh-------hcc--CcccceEEEEeccC-CCChhHHHHHHHHHh-cC----CceEEEEEecccc
Q 000570 901 FTNLRS-------RGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 953 (1415)
Q Consensus 901 F~~lr~-------rgl--~~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~ 953 (1415)
...+.. ..+ ...|++|||+..+. .+.......+..+.. ++ .++||++|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 432211 111 24889999965543 344444555554443 22 4899999999976
No 311
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.71 E-value=2.3e-08 Score=108.34 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|...+|||.||-.+....+.......+.-+ .+..+.++ +-....|.+|||.|+++|..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn-ys~~v~V~-------------dg~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN-YSANVTVD-------------DGKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc-ceEEEEec-------------CCCEEEEeeeecCCCccccc
Confidence 34559999999999999999887766655444443311 11111111 01112489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHH-----HHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIES-----LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-----l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
+|...+..+|++|+++++.. +++.+. +-.++. .++|+|+|.+|.|+.. +......|..+.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~---p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V 139 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVS---PESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV 139 (198)
T ss_pred ccccCCCCCCEEEEEEEcCC---hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc
Confidence 99889999999999998776 444433 222332 4699999999999952 2222222221100000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
. ...-. .|.. . -+-+.++.+||++..|+.+.++..+..
T Consensus 140 t-----~~~g~-~lA~------------~-iga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 T-----YEQGL-ELAK------------E-IGAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred c-----HHHHH-HHHH------------H-hCcceeeeehhhhhCCcHHHHHHHHHH
Confidence 0 00000 0111 0 134689999999999999998876543
No 312
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.67 E-value=3.5e-08 Score=113.43 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=86.6
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcc-------cccccCcee-----Eeec--eeEecccccceeee-ecc---cccc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNV-------QEGEAGGIT-----QQIG--ATYFPAENIRERTR-ELK---ANAT 884 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v-------~~geagGIT-----q~ig--a~~~~~~~i~~~t~-~v~---~~~~ 884 (1415)
....+|.|||.+|+||||||.+|++.-. ..+..+.+. ...| ...+....+..... .+. ....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 3466799999999999999998875311 111111100 0000 01111100000000 000 0111
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.....++||++-|.-..-.....+ .+.-|.|+++..|.. +.. .+-.++..+-||+|||+|++. ...
T Consensus 182 ~~~~d~liIEnvGnLvcPa~fdlg---e~~~v~vlsV~eg~d-kpl---Kyp~~f~~ADIVVLNKiDLl~------~~~- 247 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASFDLG---EKHKVAVLSVTEGED-KPL---KYPHMFAAASLMLLNKVDLLP------YLN- 247 (290)
T ss_pred hcCCcEEEEECCCCccCCCccchh---hceeEEEEECccccc-cch---hccchhhcCcEEEEEhHHcCc------ccH-
Confidence 223468899998841111111111 233457777777743 111 222344678899999999962 111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+..++..+... ....+||++||++|+|+..|+.||..
T Consensus 248 ----------------~dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 248 ----------------FDVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 1122233333322 13478999999999999999998865
No 313
>PTZ00258 GTP-binding protein; Provisional
Probab=98.66 E-value=1.7e-07 Score=112.22 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=62.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccc--eeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~--~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
++..|+|+|.+++|||||+++|++..+..+..++.|.+.....+++...+ ..+ .+..........|.|+||||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~-~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLC-KHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHH-HHcCCcccCCCCeEEEECCCcCcC
Confidence 44559999999999999999999888877777777754433333332111 001 01001111123599999999431
Q ss_pred ------hhhHHhhccCcccceEEEEecc
Q 000570 901 ------FTNLRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 901 ------F~~lr~rgl~~aDiaILVVDa~ 922 (1415)
..+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344567799999999984
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.65 E-value=1.4e-07 Score=111.09 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=76.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----cccc------------cccCc---eeEeeceeEecccccceeeeecccccccCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGG---ITQQIGATYFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----~v~~------------geagG---ITq~iga~~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
.|+|+|++++|||||+++|... ++.. ....| +|.+. .++|... ..+...... .
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTeP--kfvP~kA-----vEI~~~~~~-~ 90 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEP--KFVPNEA-----VEININEGT-K 90 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCC--ccccCcc-----eEEeccCCC-c
Confidence 3899999999999999999987 4331 12233 11111 1222221 111111111 1
Q ss_pred CCEEEEeCCCCcc-------------------------hhhH----HhhccC-cccceEEEE-ecc------CCCChhHH
Q 000570 888 PGLLVIDTPGHES-------------------------FTNL----RSRGSG-LCDIAILVV-DIM------HGLEPQTI 930 (1415)
Q Consensus 888 ~~l~iIDTPGHe~-------------------------F~~l----r~rgl~-~aDiaILVV-Da~------~Gv~~QT~ 930 (1415)
..+.||||+|+.. |..- +...+. .+|++|||. |.+ ++......
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 3599999999532 1111 122344 799999999 775 45667778
Q ss_pred HHHHHHHhcCCceEEEEEeccc
Q 000570 931 ESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 931 E~l~llk~~~vP~IVaINKiD~ 952 (1415)
..+..|+..++|||+++|++|.
T Consensus 171 ~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 171 RVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHhcCCCEEEEEECcCC
Confidence 8899999999999999999994
No 315
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.63 E-value=5.5e-07 Score=101.15 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=90.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
|++||..++||||+...|.+...+ ....-|.|.++....+.. ...-.|+|||+||+..|...
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---------------~~~~~l~iwD~pGq~~~~~~~~ 66 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---------------LSFLPLNIWDCPGQDDFMENYF 66 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---------------TTSCEEEEEEE-SSCSTTHTTH
T ss_pred EEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---------------CCCcEEEEEEcCCccccccccc
Confidence 899999999999999998754322 111223343332222210 11235999999999887654
Q ss_pred ---HhhccCcccceEEEEeccCCCChhHH----HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 905 ---RSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 905 ---r~rgl~~aDiaILVVDa~~Gv~~QT~----E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+..-++.|.++|+|+|+...-....+ ..+..|.. .++.+.|+|+|||++. .+.+.
T Consensus 67 ~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~--------- 130 (232)
T PF04670_consen 67 NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDERE--------- 130 (232)
T ss_dssp TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHH---------
T ss_pred cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHH---------
Confidence 45567889999999999832222222 23334443 3578999999999973 22221
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..|......+...+...+++ .+.++.||.+.. .|+.+....++
T Consensus 131 -~~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~----Sly~A~S~Ivq 173 (232)
T PF04670_consen 131 -EIFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE----SLYEAWSKIVQ 173 (232)
T ss_dssp -HHHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST----HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc----HHHHHHHHHHH
Confidence 22334445555566555432 478999998874 44554444443
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.62 E-value=4.6e-08 Score=109.64 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
++.+.||-|-|...-... -...||++|||+-...|-.-|.+.. .++ .++=|+||||.|+.. +.
T Consensus 121 G~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gim---EiaDi~vVNKaD~~g-------A~--- 183 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKA-GIM---EIADIFVVNKADRPG-------AD--- 183 (266)
T ss_dssp T-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-T-THH---HH-SEEEEE--SHHH-------HH---
T ss_pred CCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhh-hhh---hhccEEEEeCCChHH-------HH---
Confidence 456899999985433222 2456999999999888877665432 111 135699999999752 11
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.....+...|....-. ...| ..||+.|||.+|.||++|++.|..+.
T Consensus 184 --------------~~~~~l~~~l~l~~~~------~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 184 --------------RTVRDLRSMLHLLRER------EDGW--RPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --------------HHHHHHHHHHHHCSTS------CTSB----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHhhcccc------ccCC--CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 1111222222211100 1112 36999999999999999999887654
No 317
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=6.5e-08 Score=100.30 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=76.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.++++|--|+||||||..|-.......- -|.|...-.+. +.+-.++.+|..||..-...+.
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred eEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHHH
Confidence 4899999999999999999654332111 12222211111 2223588999999998888888
Q ss_pred hccCcccceEEEEeccCC-CChhHHHHHHHHH----hcCCceEEEEEeccccc
Q 000570 907 RGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk----~~~vP~IVaINKiD~~~ 954 (1415)
.++..||.+|++||+.+- .....+..+..+. ..++|++|..||||+++
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 999999999999999762 2233344443332 36799999999999974
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.60 E-value=2.6e-07 Score=106.88 Aligned_cols=122 Identities=26% Similarity=0.376 Sum_probs=68.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
.|.|+|..|+|||||++.|.++.+..... .+... .........+......+... . -...|+||||||+.+..+.
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~-~~~~~-~~~~~~~~~i~~~~~~l~e~-~-~~l~LtiiDTpGfGd~i~n~~ 81 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDS-SIPPP-SASISRTLEIEERTVELEEN-G-VKLNLTIIDTPGFGDNIDNSD 81 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS----------S-------SCEEEEEEEEEEEET-C-EEEEEEEEEEC-CSSSSTHCH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccc-ccccc-ccccccccceeeEEEEeccC-C-cceEEEEEeCCCccccccchh
Confidence 58999999999999999999876543320 00000 00000000011111111110 0 0125999999996643221
Q ss_pred ----------------H------hh---ccCcccceEEEEecc-CCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 905 ----------------R------SR---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 905 ----------------r------~r---gl~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
. .| .-...|++|++|+.+ +|+.+..++.|..|..+ +++|.||.|.|.+
T Consensus 82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~l 155 (281)
T PF00735_consen 82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEeccccc
Confidence 0 01 112368899999974 89999999999888776 8999999999997
No 319
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=1e-07 Score=112.90 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=94.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
++.++|+|.+++|||||++.++...+.......+|..+. ...++|+.-.+.+|||||.-+.
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~----------------vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL----------------VGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhh----------------hhhhhhheeeeeecCCccccCcchh
Confidence 334999999999999999999877665433333222221 1233455667999999995332
Q ss_pred --hh--HHh-hc-cCcccceEEEEecc--CCCChhH-HHHHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 902 --TN--LRS-RG-SGLCDIAILVVDIM--HGLEPQT-IESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 902 --~~--lr~-rg-l~~aDiaILVVDa~--~Gv~~QT-~E~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
.+ |.+ .+ +.+--.+++++|.+ +|..... ..++..++ -.|.|+|+|+||||.... .++
T Consensus 232 drN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~------edL------ 299 (620)
T KOG1490|consen 232 DRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP------EDL------ 299 (620)
T ss_pred hhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc------ccc------
Confidence 11 111 11 12233577788875 4554322 12222232 246799999999999742 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...-..++..+... +.++|+.+|+.+.+||-++-...+.
T Consensus 300 ---------~~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 300 ---------DQKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred ---------CHHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHHH
Confidence 11122344444333 3479999999999999888765443
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.60 E-value=1.4e-07 Score=106.88 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=99.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCccccc-------------ccCc-----------eeEeeceeEecccccceeeee
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-------------EAGG-----------ITQQIGATYFPAENIRERTRE 878 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-------------eagG-----------ITq~iga~~~~~~~i~~~t~~ 878 (1415)
-++++|+|.|.+|+|||||++.|...-+..| ..|| ++.+.++|.-|..+.-. ...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~-lGG 127 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT-LGG 127 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc-chh
Confidence 4677899999999999999999853211111 1111 22344444444332111 011
Q ss_pred cc-------cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 879 LK-------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 879 v~-------~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
+. .-++--++.+.||-|-|...--.- -...+|++|+|.-..-|-.-|.+.. .+ +.+-=||||||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~-Gi---mEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA-GI---MEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh-hh---hhhhheeeEeccC
Confidence 10 011112456899999985433222 2345899999988777777777653 12 2234599999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
+.. +.. . ...+...|... . .+|.... -..|+|.+||.+|+||.+|+..+.
T Consensus 201 ~~~-------A~~----------a-------~r~l~~al~~~---~-~~~~~~~--W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 201 RKG-------AEK----------A-------ARELRSALDLL---R-EVWRENG--WRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred hhh-------HHH----------H-------HHHHHHHHHhh---c-ccccccC--CCCceeEeeeccCCCHHHHHHHHH
Confidence 742 110 0 11111122111 0 1122222 346999999999999999999987
Q ss_pred HHHH
Q 000570 1032 QWTQ 1035 (1415)
Q Consensus 1032 ~l~~ 1035 (1415)
.+..
T Consensus 251 ~h~~ 254 (323)
T COG1703 251 DHRK 254 (323)
T ss_pred HHHH
Confidence 7653
No 321
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=98.54 E-value=2.4e-07 Score=90.03 Aligned_cols=88 Identities=28% Similarity=0.478 Sum_probs=66.6
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeec
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1127 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~ 1127 (1415)
+++|+|++..+|+|++++++|++|+|++||+|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999998764 34667788875541 1222 223444555
Q ss_pred ccccc-ccCCCceEEeCCCccHHHHHH
Q 000570 1128 QGLEH-AIAGTGLYVVGPDDDLEDVKE 1153 (1415)
Q Consensus 1128 ~gL~~-~~aG~~~~v~~~e~~~~~~~~ 1153 (1415)
.||.. +.+|+.|+++.++.++..+..
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~~ 91 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIGS 91 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhhH
Confidence 67776 689999999999987765543
No 322
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.9e-06 Score=98.95 Aligned_cols=134 Identities=22% Similarity=0.291 Sum_probs=87.6
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCc--eeEeeceeEe-ccc-ccceeeeeccccc-------------
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYF-PAE-NIRERTRELKANA------------- 883 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagG--ITq~iga~~~-~~~-~i~~~t~~v~~~~------------- 883 (1415)
+-...|.|.+||+-.+||||+|+.|+...+..-..|. .|....+... +.+ .+-..+..+....
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4456789999999999999999999976654222111 1111111000 000 0000000000000
Q ss_pred ------ccC---CCCEEEEeCCCC-----------cchhhHHhhccCcccceEEEEeccC-CCChhHHHHHHHHHhcCCc
Q 000570 884 ------TLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNTE 942 (1415)
Q Consensus 884 ------~~~---~~~l~iIDTPGH-----------e~F~~lr~rgl~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~vP 942 (1415)
.+. ...|+||||||. .+|+......+..||++|||+|+.. -+.+.+.++|..|+-..-.
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk 213 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK 213 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce
Confidence 000 236999999994 4577777777888999999999865 4778999999999988888
Q ss_pred eEEEEEeccccc
Q 000570 943 FIVALNKVDRLY 954 (1415)
Q Consensus 943 ~IVaINKiD~~~ 954 (1415)
+-||+||.|.+.
T Consensus 214 iRVVLNKADqVd 225 (532)
T KOG1954|consen 214 IRVVLNKADQVD 225 (532)
T ss_pred eEEEeccccccC
Confidence 999999999973
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=1.6e-07 Score=100.81 Aligned_cols=163 Identities=21% Similarity=0.197 Sum_probs=86.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeE----------ecccccc-eeeeeccc----------ccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY----------FPAENIR-ERTRELKA----------NAT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~----------~~~~~i~-~~t~~v~~----------~~~ 884 (1415)
..|.|+|++|+||||||.+++..-......+=||-++.... .+.-.+. ...++... ...
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 45999999999999999998643222222222343332200 0000000 00000000 001
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhcc-Cccc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGS-GLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl-~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
+..-.|+||-+.| |+..+.+ .+.| +-|+|||...|..---.-.-.+ . .-=|+||||+|+.+. .
T Consensus 94 ~~~~Dll~iEs~G-----NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i---~-~aDllVInK~DLa~~------v 158 (202)
T COG0378 94 FPDLDLLFIESVG-----NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGI---F-KADLLVINKTDLAPY------V 158 (202)
T ss_pred CCcCCEEEEecCc-----ceecccCcchhhceEEEEEECCCCCCCcccCCCce---e-EeeEEEEehHHhHHH------h
Confidence 1123689999888 2222222 2345 8899999998853211000000 0 135789999999731 1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ .+........ .+.+..|||.+|++||+|+.+++.|+...
T Consensus 159 ~~-----------------dlevm~~da~-------------~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GA-----------------DLEVMARDAK-------------EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred Cc-----------------cHHHHHHHHH-------------HhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11 0111111111 12366899999999999999999887643
No 324
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=5.6e-08 Score=112.75 Aligned_cols=89 Identities=25% Similarity=0.243 Sum_probs=53.1
Q ss_pred ccccccccccCCCCCCCcCCCCccchhh-hhhhhcccccCCCCCCCCCCCcchhhhhccCCCCCCCCCCCcccccccccc
Q 000570 59 KGKKGNQKNLQAEDDDSKGEEGEENDAE-AIVFTGKKKSKGKKNGGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKYV 137 (1415)
Q Consensus 59 k~kk~~~k~~~~~~~d~~~~~~~~~~~~-~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 137 (1415)
+||++++ ||+|.++- +.+.. .-...|.||+|.+++|+ -||+.++..-+.++.|++++.+++. ..
T Consensus 1 ~~k~~~~-----~~~d~e~l---~~~q~~~ps~k~~kkgkr~~~~~----~s~~edvt~~nr~~~d~e~i~~~~q---~k 65 (807)
T KOG0066|consen 1 KGKKKER-----FDDDEEQL---EKVQEKKPSKKGGKKGKRGGGGG----DSSDEDVTTRNRDNEDLESIASSNQ---SK 65 (807)
T ss_pred CCCcccc-----CCCcHHHH---hhhcccCcchhccccccCCCCCC----ccchhhhhhccccchhHHHHhhhhh---HH
Confidence 3555666 77776544 22211 11344445555444443 1677777766777777888888775 11
Q ss_pred cccccccccccccccCCCcCchhhhhccccCCCCCCCC
Q 000570 138 SLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESE 175 (1415)
Q Consensus 138 ~~~~k~k~~kk~~k~~~~~~~~~~~~~~~~~d~~~~~~ 175 (1415)
.-+--++.+||++||+++ .+||++.
T Consensus 66 qq~~~kkq~kk~kkgkr~-------------~d~~de~ 90 (807)
T KOG0066|consen 66 QQTAGKKQAKKGKKGKRN-------------NDWSDED 90 (807)
T ss_pred HHHHHHHHhhhccccccc-------------CCCCccc
Confidence 112235667779999999 8888743
No 325
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.41 E-value=2.2e-06 Score=95.43 Aligned_cols=111 Identities=24% Similarity=0.217 Sum_probs=69.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
.|+|||.+|+|||||+|.|++..+.... ..++|+.+..+... +.+..|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999988764322 23344443322221 23356999999995432
Q ss_pred ----hhHHh----hccCcccceEEEEeccCCCChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 902 ----TNLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 902 ----~~lr~----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
..... ......+++|||+.+. .++......+..+.. ++ ..+||++|..|.+.
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 11111 2344589999999988 677777777766653 33 26899999999863
No 326
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.39 E-value=6.3e-07 Score=108.52 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=75.9
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.++...|+|+|.-|+|||||+-.|+...+... |...+--+.+|.+. .-....++|+||+-...-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadv------------tPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADV------------TPENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCcc------------CcCcCceEEEecccccch
Confidence 44556699999999999999999987654421 11111112222211 111123899999866554
Q ss_pred hhHHhhccCcccceEEEEeccCC--CChhHHHHHHHHHhc-----CCceEEEEEecccccC
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKMR-----NTEFIVALNKVDRLYG 955 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~G--v~~QT~E~l~llk~~-----~vP~IVaINKiD~~~~ 955 (1415)
..-...-++.+|+++||++.++. +..-+..+|-+++.. ++|+|+|.||+|...+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 44445677889999999988762 222223344455543 5899999999999754
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.37 E-value=1.2e-06 Score=92.38 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=67.2
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..+..+.+..||++|+|+|+.++...+....+.++...+.|+|+|+||+|++.. ..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 58 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK------EV----------------- 58 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH------HH-----------------
Confidence 3456666677799999999999887777766666677778999999999998520 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+.... .+... ..+++|++||++|.|+..|+..|..+++
T Consensus 59 --~~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 59 --LEKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --HHHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 00000 01100 1247999999999999999988876543
No 328
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.6e-07 Score=109.75 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVaINKiD~~ 953 (1415)
..+++||.|||.+|...+..|.+.+|.++|+|.+.-| ...||.++..+...+++ ++||.+||||..
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998443 35899999999999985 889999999975
No 329
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.29 E-value=3.5e-06 Score=86.33 Aligned_cols=114 Identities=24% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCcee-EeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 901 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT-q~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F- 901 (1415)
+...|+|+|.-++|||+||..|+..+...+..---| .+|....+.++.. --..|.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-------------arE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-------------AREQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-------------hhheEEEeecccccCch
Confidence 334589999999999999999998776544322112 2333333322211 0124899999998888
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHh--------cCCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--------RNTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~--------~~vP~IVaINKiD~~ 953 (1415)
..+-..+++.+|+.|||++.++ +..+.-+.+|+. ..+|+||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6667778889999999999988 333333334432 248999999999995
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.25 E-value=4.7e-06 Score=97.10 Aligned_cols=115 Identities=25% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccc------cC----ceeEeeceeEecccccceeeeecccccccCCCCEEEE
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------AG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 893 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge------ag----GITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iI 893 (1415)
.+.+|.++|..|+|||||++.|+++.+.... +. ++...+....+.-+.. ...|++|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~--------------~~~l~vI 87 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--------------HLNLTVI 87 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe--------------EEEEEEe
Confidence 3456999999999999999999987544331 11 1112221111111110 1249999
Q ss_pred eCCCCcchhhHH------------------------hhccC----cccceEEEEec-cCCCChhHHHHHHHHHhcCCceE
Q 000570 894 DTPGHESFTNLR------------------------SRGSG----LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFI 944 (1415)
Q Consensus 894 DTPGHe~F~~lr------------------------~rgl~----~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~I 944 (1415)
||||..+|.... .|... ..++||+.|-. .||+.+..++.+..+..+ |.+|
T Consensus 88 DtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlI 166 (373)
T COG5019 88 DTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLI 166 (373)
T ss_pred ccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCee
Confidence 999987764320 12211 25677877764 689999999999887654 6899
Q ss_pred EEEEecccc
Q 000570 945 VALNKVDRL 953 (1415)
Q Consensus 945 VaINKiD~~ 953 (1415)
.||-|.|.+
T Consensus 167 PVI~KaD~l 175 (373)
T COG5019 167 PVIAKADTL 175 (373)
T ss_pred eeeeccccC
Confidence 999999987
No 331
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=3.7e-06 Score=89.32 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...++++|..++||||++.+.+...+...... .+|....|+.... +.....++.|||.|++.|..+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~a----t~Gv~~~pl~f~t----------n~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPA----TLGVEVHPLLFDT----------NRGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccC----cceeEEeeeeeec----------ccCcEEEEeeecccceeeccc
Confidence 34589999999999999999987665432211 1222222221100 111235899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH--HHHHh-cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL--NLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l--~llk~-~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+..+.-..-+||+++|....++.+....| .+++. .|+|+|++.||+|.-. +.
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-----r~-------------------- 130 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-----RK-------------------- 130 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-----cc--------------------
Confidence 99888888999999999887776655555 33333 3589999999999741 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.....+. + ....++.++.+||.+..|...-+.+|..
T Consensus 131 --------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 131 --------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred --------cccccce---e----eecccceeEEeecccccccccchHHHhh
Confidence 0000000 0 1135678999999999999888777654
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=98.20 E-value=2.1e-06 Score=101.47 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCcchhh-HH---hh--ccCcccceEEEEeccCCCChhHHHHHHHHH-hcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN-LR---SR--GSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~-lr---~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiD~~ 953 (1415)
..+.||||||...... ++ .. ....+|.++||+|+..|- ...+.+.... ..+ +--+++||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-CCEEEEeeecCC
Confidence 4599999999654321 11 11 123478999999997752 2222222222 223 456789999985
No 333
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.2e-05 Score=94.50 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=64.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 899 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe--- 899 (1415)
.+.|+|+|-+|+|||||+++|+...+..... .+|-...|..++|...+...+..+...-.+....+.|+|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3569999999999999999999887654444 44555667777776433322211111111222359999999942
Q ss_pred ----chhhHHhhccCcccceEEEEecc
Q 000570 900 ----SFTNLRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 900 ----~F~~lr~rgl~~aDiaILVVDa~ 922 (1415)
-..|-...-++.+|.++.||++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23444455567799999999985
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=4.2e-06 Score=99.95 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccc-cc--cCceeEee---cee----------EecccccceeeeecccccccCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-GE--AGGITQQI---GAT----------YFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge--agGITq~i---ga~----------~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
+.-+|+|+|++|+||||++.+|....+.. |. .+-||.+. |+. .++................+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34579999999999999999997532211 10 01122111 110 0011000000000000012345
Q ss_pred CCEEEEeCCCCcchhh---HHhh---ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-------eEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN---LRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~---lr~r---gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-------~IVaINKiD~~ 953 (1415)
..++||||||...+.. .... +...+.-.+||++++.+....+.-.+.+....++| -=+++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 6799999999664322 1222 22334556999999987766554444444443333 24778999975
No 335
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.13 E-value=4.5e-06 Score=99.19 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
+.|+|+|.+++|||||+++|++..+..+..++.|. .+|...++..........+. ...+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~-p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK-PKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcC-CccccCceEEEEECCCCCCCCC
Confidence 46999999999999999999998866666666664 44555554321110000000 0011112599999999432
Q ss_pred ----hhhHHhhccCcccceEEEEeccC
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
..+.....++.||++|+|||+..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 22233445678999999999853
No 336
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.12 E-value=2.3e-06 Score=98.44 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEe--eceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~--iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+|+|.+++|||||+++|++.++..+..++.|.+ .|...++.......+. +.....+-...|.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~-~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAE-IVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHH-HhCCceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999988876666676644 4444443321100000 0000011112599999999432
Q ss_pred --hhhHHhhccCcccceEEEEeccC
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
+.+.....++.||++|+|||+..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 22233345677999999999853
No 337
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.09 E-value=8.3e-06 Score=92.81 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=65.1
Q ss_pred CcchhhHHhhccCcccceEEEEeccCCC-ChhHH-HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 898 HESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 898 He~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~-E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
++.|..++...++.+|++|+|+|+.+.. ....+ .++..+...++|+|||+||+|+... ...
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----------- 85 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----------- 85 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH-----------
Confidence 3667777777899999999999998643 33333 3344555678999999999999621 000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
. ......+... .++++.+||++|.||.+|+..|..
T Consensus 86 ~-------~~~~~~~~~~---------------g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 86 E-------KEQLDIYRNI---------------GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H-------HHHHHHHHHC---------------CCeEEEEecCCchhHHHHHhhhcC
Confidence 0 0111122211 258999999999999999987753
No 338
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=7.7e-06 Score=89.14 Aligned_cols=104 Identities=21% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 896 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 896 PGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|.+..|..++...+..+|++|+|||+.+......... .....+.|+|+|+||+|++..+ .. ...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~-----~~-~~~-------- 82 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD-----KN-LVR-------- 82 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC-----CC-HHH--------
Confidence 4555588899999999999999999987543322222 2233578999999999996311 00 000
Q ss_pred HHHHHHHHHHHHH--HHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVT--QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~--~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+..... .+...++ ...++|++||++|.||.+|+..|..++
T Consensus 83 -------~~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 83 -------IKNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -------HHHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000100 0111111 113689999999999999998887654
No 339
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.08 E-value=7.8e-06 Score=90.39 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=52.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 901 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F---- 901 (1415)
|.++|.+.+|||||+..|.++. |+.++....| .+.....|+.+.|.++|.||.-.=
T Consensus 62 vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~------------------~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 62 VGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT------------------TVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeEEecCccchhhhhhhhcCCCCccccccceeEE------------------EecceEeccccceeeecCcchhcccccC
Confidence 8999999999999999998653 3333322111 112223467788999999995332
Q ss_pred ---hhHHhhccCcccceEEEEeccC
Q 000570 902 ---TNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 902 ---~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
...+...++-|+++++|+|+..
T Consensus 124 kgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccC
Confidence 1223344667999999999864
No 340
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=3.1e-05 Score=84.93 Aligned_cols=117 Identities=24% Similarity=0.299 Sum_probs=72.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccccc-----ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~g-----eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
..|.|+|..|.|||||++.|....+... .+-.|++.+-.... ...+.+.... -.|++|||||+.+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~-thvieE~gVk---------lkltviDTPGfGD 116 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSI-THVIEEKGVK---------LKLTVIDTPGFGD 116 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEee-eeeeeecceE---------EEEEEecCCCccc
Confidence 4599999999999999999986655432 11122222111100 0111111111 1499999999776
Q ss_pred hhhH--------------------------HhhccCc--ccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 901 FTNL--------------------------RSRGSGL--CDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 901 F~~l--------------------------r~rgl~~--aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
+.+. |.+-+.. .+++++.|.. .|.+.|..++.+..|... +.+|.||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 5432 2222222 4566766665 578899999999877643 46888899999
Q ss_pred cc
Q 000570 952 RL 953 (1415)
Q Consensus 952 ~~ 953 (1415)
.+
T Consensus 196 tl 197 (336)
T KOG1547|consen 196 TL 197 (336)
T ss_pred cc
Confidence 86
No 341
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.08 E-value=2.8e-05 Score=96.91 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=67.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
..|+|||.+|+|||||+|.|++..+.... ..++|. +..+... +.+..|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 45999999999999999999987643222 123332 1111111 123469999999976531
Q ss_pred -----hH----HhhccC--cccceEEEEeccCC-CChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 903 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 903 -----~l----r~rgl~--~aDiaILVVDa~~G-v~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
.. ..+.+. .+|++|||+..... ........++.+.. ++ -.+||++|..|.+.
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11 112323 47888888876532 22233344444432 22 37999999999874
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.08 E-value=1.2e-05 Score=84.84 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=61.5
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.+..+|++|+|||+.+++..+......++... ++|+|+|+||+|++.. . .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------VTA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------HHH
Confidence 456789999999999998776666666776653 4899999999999620 0 011
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+..+... + .+.+|++||++|.|+..|+..|..++
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHHH
Confidence 111122111 0 12368999999999999998886543
No 343
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.08 E-value=1.2e-05 Score=85.48 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCcchhhHH--------hhccCcccceEEEEeccCCCChh--HHHHHHHHHhcCCceEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr--------~rgl~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4679999999954322221 22344589999999997643321 11223444444 3779999996
No 344
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.06 E-value=1.1e-06 Score=92.64 Aligned_cols=160 Identities=20% Similarity=0.186 Sum_probs=105.4
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.++-. +.|+|.-++|||+++.+.++.++.......|..+.....+.|+. .....+.|||..|++.
T Consensus 23 ~hL~k--~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQer 87 (229)
T KOG4423|consen 23 EHLFK--VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQER 87 (229)
T ss_pred hhhhh--hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhhh
Confidence 44444 88999999999999999988776544433333222211222221 1123588999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChh-HHHHHHHHHh-----cC--CceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM-----RN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~-----~~--vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|.+|..-++..+.++++|+|.+...+.. +..+.+-+-. .+ +|+|+..||||... |....
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~~~------------ 154 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAKNE------------ 154 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhhhh------------
Confidence 9999999999999999999998865533 2223332221 23 57899999999852 11100
Q ss_pred HHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
-...+..+ .++| +.-++.||++...+|++....|+.
T Consensus 155 ----------~~~~~d~f~keng--------------f~gwtets~Kenkni~Ea~r~lVe 191 (229)
T KOG4423|consen 155 ----------ATRQFDNFKKENG--------------FEGWTETSAKENKNIPEAQRELVE 191 (229)
T ss_pred ----------hHHHHHHHHhccC--------------ccceeeeccccccChhHHHHHHHH
Confidence 01122222 2333 346889999999999998887765
No 345
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=2.8e-05 Score=91.50 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=73.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..+.++|..|.|||||+|.|..+.+.... ..+...++-- +..+......+..+ .+ .-.|++|||||..++...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~----t~~i~~~~~~iee~-g~-~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKE----TVEIESTKVEIEEN-GV-KLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccc----cceeeeeeeeecCC-Ce-EEeeEEeccCCCcccccc
Confidence 66999999999999999999877544221 0000000000 00011111111100 00 124899999997654321
Q ss_pred ------------------------Hhh-ccC--cccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 905 ------------------------RSR-GSG--LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 905 ------------------------r~r-gl~--~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..| ... ..+++|+.|.. .||+.|..++.+..+.. .+.+|.||-|.|.+
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTL 171 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccC
Confidence 011 122 36788888875 68999999999887764 47899999999987
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.04 E-value=9.3e-06 Score=95.67 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCcchhhH-------Hhhc-----cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l-------r~rg-----l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||...+... ..+. ...++..+||+|++.|..... ....+.... -+.-+++||+|..
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~-~~~giIlTKlD~t 272 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAV-GLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhC-CCCEEEEECCCCC
Confidence 456999999996543221 1111 234788999999997543222 111222222 2457899999974
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.04 E-value=3.9e-05 Score=81.00 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=57.0
Q ss_pred cceEEEEeccCCCChhHHHHH-HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000570 913 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991 (1415)
Q Consensus 913 DiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~ 991 (1415)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . .+...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~------~-------------------~~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK------E-------------------VLRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH------H-------------------HHHHHHHHHH
Confidence 789999999887665554444 4667788999999999999620 0 0001111111
Q ss_pred HcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 992 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 992 e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...++|++||.+|.|+..|+..|...+
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999887654
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.02 E-value=1.4e-05 Score=85.86 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCcc-hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~-F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||.. ..+.....+..+|++|+|+|+.++.......++..+ .+.|+|+++||+|++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~------~~---------- 63 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP------KK---------- 63 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh------HH----------
Confidence 478754 345556778889999999999887766555544443 36799999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+...+..+... ...++++||++|.|+..|+..|...+.
T Consensus 64 ---------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 64 ---------TKKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ---------HHHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 00111111111 136899999999999999998877653
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.01 E-value=8.9e-06 Score=93.92 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCcchhhHHh-------hc-----cCcccceEEEEeccCCCChhHHHHHHH-HHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~-------rg-----l~~aDiaILVVDa~~Gv~~QT~E~l~l-lk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..+..... +. ...+|.+|||+|++.| ..+...+.. .+..+ +.-+++||+|-.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCCC
Confidence 35699999999765422211 11 2348999999999754 333333322 22233 567899999985
No 350
>PRK12289 GTPase RsgA; Reviewed
Probab=97.97 E-value=3.1e-05 Score=92.44 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=59.3
Q ss_pred hhccCcccceEEEEeccCCC-Ch-hHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGL-EP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv-~~-QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
...+..+|++|||+|+.+.. .+ +...+|..+...++|+|||+||+|++.. . .+
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~-------------------~~ 138 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------T-------------------EQ 138 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------H-------------------HH
Confidence 34578899999999998642 33 2234455556678999999999999621 0 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+...| +++|++||.+|.||.+|+..|...
T Consensus 139 ~~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 139 QQWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 11112222221 478999999999999999887643
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.95 E-value=1.6e-05 Score=96.38 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcchhh-HH---h--hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTN-LR---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~-lr---~--rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..... ++ . .....+|.++||+|++.|... ...+..+...--+--+++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 35799999999654321 11 1 123357889999999887443 222333333223677899999974
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.95 E-value=2.2e-05 Score=90.87 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCCcc-hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~-F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||.. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|++.. ..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~~---------- 65 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------AV---------- 65 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------HH----------
Confidence 388854 344456678889999999999887665555555555 36899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
+......+... .+++|++||.+|.|+..|+..|..+++.
T Consensus 66 ---------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 ---------TKQWLKYFEEK---------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---------HHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00111112111 1478999999999999999988776643
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.90 E-value=1.8e-05 Score=83.70 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=39.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..|+|+|.+|+|||||+|+|++... ..+...|.|.+...+.. ..++.||||||.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-------------------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-------------------CCCEEEEECcCC
Confidence 4588999999999999999998654 45666777765432211 135899999994
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.86 E-value=2.1e-05 Score=84.78 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=42.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
...|+|+|.+++|||||+|+|++... ..+...|+|.+...+.+. .++.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 35699999999999999999998654 556677888765433321 25899999994
No 355
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=3.5e-05 Score=94.17 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCcchhhH------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--Cce-EEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEF-IVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~l------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~-IVaINKiD~~ 953 (1415)
..+.||||||...+... ....+..+|.+|||+|++.| . ..++.++.++ +++ -|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q---~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--Q---QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--H---HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 37999999996554221 12334568999999999886 2 3334444432 343 5789999964
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.82 E-value=4.4e-05 Score=79.35 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=41.8
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEecccc
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 953 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~~ 953 (1415)
..+.+..||++|+|+|+.++...+......++... ++|+|+|+||+|++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 44677889999999999998887777777777766 89999999999986
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.81 E-value=4.6e-05 Score=88.79 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCcch-hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~F-~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||..= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~---------- 67 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E---------- 67 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H----------
Confidence 5888653 334456788899999999998877766555555443 7899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+......+... .++++++||.+|.|+..|+..|..+++.
T Consensus 68 --------~~~~~~~~~~~~---------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 --------VTKKWIEYFEEQ---------------GIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred --------HHHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 001111122111 1478999999999999999988777654
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=5.3e-05 Score=90.27 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCEEEEeCCCCcchhhH----Hhh--ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNL----RSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~l----r~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..++||||||....... ..+ .....+.++||+|+..+- ......+..+...+ .-=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 46999999996543221 111 123467789999986422 12234444444433 235679999975
No 359
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.76 E-value=3.3e-05 Score=85.09 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCEEEEeCCCCcchhhHH-----h-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-----S-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-----~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.||||||+..+.... . ......+-++||++++.+..... ....+....++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 459999999966543221 1 11224778999999988643222 344444444544 4459999986
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=8.3e-05 Score=91.69 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccccc---ccCceeE---eeceeE----------ecccccceeeeeccc-ccccC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQ---QIGATY----------FPAENIRERTRELKA-NATLK 886 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~g---eagGITq---~iga~~----------~~~~~i~~~t~~v~~-~~~~~ 886 (1415)
+..+|+|+|..|+|||||+.+|...-...+ ...-|+. .+|+.. +++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 456799999999999999998864211110 0001111 111100 00000000 000000 00233
Q ss_pred CCCEEEEeCCCCcchhhHH------hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr------~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...++||||||...+.... .+.. .....+|||++..+.... .+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 4679999999965443221 1111 134568888887643222 2334433333 3677999999984
No 361
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=2e-05 Score=92.19 Aligned_cols=61 Identities=31% Similarity=0.335 Sum_probs=35.5
Q ss_pred hccCCCCCCC-CCCCcccccCCCCCccccccccCCCCCCcc-------cccccccccccCCCCCCccccccCCCC
Q 000570 197 SKKGGKKKSG-TTGFSASAFDLLDDEDEDVREDKDEEDEPV-------IFTDKKKKSKKSGKNSSTFDLLVNEND 263 (1415)
Q Consensus 197 ~~k~~~kk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~kk~~kk~~k~~~~~~~~~~~~d 263 (1415)
++|+++|++. |++++++..++.-.+.+. .+.+++ -.++.++.+||++|++.+-+|+|+++.
T Consensus 24 s~k~~kkgkr~~~~~~s~~edvt~~nr~~------~d~e~i~~~~q~kqq~~~kkq~kk~kkgkr~~d~~de~e~ 92 (807)
T KOG0066|consen 24 SKKGGKKGKRGGGGGDSSDEDVTTRNRDN------EDLESIASSNQSKQQTAGKKQAKKGKKGKRNNDWSDEDEK 92 (807)
T ss_pred chhccccccCCCCCCccchhhhhhccccc------hhHHHHhhhhhHHHHHHHHHHhhhcccccccCCCCccccc
Confidence 4566666654 455556655555444331 122232 133446777788888888999986554
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=97.74 E-value=8.8e-05 Score=86.92 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=55.2
Q ss_pred cCcccceEEEEeccCCCC-hhH-HHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLE-PQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~-~QT-~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
+..+|++|||+|+.+... ... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 478999999999976422 222 34455567788999999999998521 00 01111
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+... .++++++||++|.||..|+..|.
T Consensus 134 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAI---------------GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHC---------------CCeEEEEeCCCCccHHHHHhhcc
Confidence 1112111 14899999999999998887653
No 363
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.72 E-value=0.00022 Score=84.06 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=73.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEee-ceeEeccccccee-----eeecccc---------cc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRER-----TRELKAN---------AT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~i-ga~~~~~~~i~~~-----t~~v~~~---------~~ 884 (1415)
|+.+|.|.-|+||||||+.|+... |...+.|-|..+- +........+.+. |+++..+ ..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 788999999999999999998543 2334444444441 1111111111111 1221110 01
Q ss_pred cCCCCEEEEeCCCCcc-------hhh-HHhhccCcccceEEEEeccCCCChhH---HHHHHHHHhcCCceEEEEEecccc
Q 000570 885 LKVPGLLVIDTPGHES-------FTN-LRSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~-------F~~-lr~rgl~~aDiaILVVDa~~Gv~~QT---~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+..+||-|-|... |.. ...+..-..|.+|-|||+.+...... .....++... =+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 2347799999999544 222 12223334688999999998666443 2333444444 48999999998
Q ss_pred c
Q 000570 954 Y 954 (1415)
Q Consensus 954 ~ 954 (1415)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 3
No 364
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.72 E-value=0.00052 Score=84.67 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=45.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|.|||..++||||||.+|.+..- ...|. -++++|+.+..-. ..+ ...++||=..|-..|..+.
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~---~~~~~--aLeYty~~v~d~~--------~dd--~~rl~vw~L~g~~~~~~LL 90 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED---PKKGL--ALEYTYLDVKDED--------RDD--LARLNVWELDGDPSHSDLL 90 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC---CCCCc--ccceEEEeeccCc--------CCc--CceeeEEEcCCCcchHhHh
Confidence 4499999999999999999875321 11222 2444444332110 011 1223444333444455555
Q ss_pred hhccC---ccc-ceEEEEeccCC
Q 000570 906 SRGSG---LCD-IAILVVDIMHG 924 (1415)
Q Consensus 906 ~rgl~---~aD-iaILVVDa~~G 924 (1415)
.-.+. ..+ ++|||+|....
T Consensus 91 k~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 91 KFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred cccCCcccccceEEEEEecCCCh
Confidence 44443 233 46777887654
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.72 E-value=7.5e-05 Score=83.95 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=52.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC--ccccccc-CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t--~v~~gea-gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
+|+|+|..++|||||||.|++. .+..+.. ...|..|-.+..++.. .....++||||||..+..
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5899999999999999999988 5544322 2334444334333321 012359999999954431
Q ss_pred -----hHHhhccC--cccceEEEEeccC
Q 000570 903 -----NLRSRGSG--LCDIAILVVDIMH 923 (1415)
Q Consensus 903 -----~lr~rgl~--~aDiaILVVDa~~ 923 (1415)
.++..++. .+|++|++++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 22233333 4898888887643
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.70 E-value=5.6e-05 Score=79.77 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.+.|+|+|++++|||||+|+|++... ..+...|+|.+.-.+.+. .+++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 456699999999999999999998653 344445666554332221 35999999994
No 367
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.70 E-value=0.00071 Score=77.29 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.|.|+|..++||||||.+|-+..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc
Confidence 49999999999999999997654
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.70 E-value=2.5e-05 Score=83.02 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.+++.+++|+|+.|+|||||+|.|+...
T Consensus 32 ~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 32 LLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567789999999999999999999763
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.69 E-value=5.4e-05 Score=78.68 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=37.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.|+|+|.+|+|||||+++|++.... .....|.|.+.-.+.+ ..++.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCcC
Confidence 5999999999999999999976542 3334445544321111 1258999999963
No 370
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.68 E-value=0.00017 Score=69.61 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cc
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1122 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~g 1122 (1415)
.+|++.|.++|.+.|.|+++.+.|.+|+|+.||.|++++++ . ...|+++++++..+..+ ..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~--------------~~~V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--V--------------TGEVKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--c--------------EEEEEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987643 2 23456666666665544 34
Q ss_pred eeeeccccccccCCCceEEeCCC
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
+.|.+.+++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 88888888765555666776654
No 371
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.65 E-value=0.00033 Score=77.55 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=51.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-hh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-TN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-~~ 903 (1415)
.|+++|.+.+||||||..|+.+.-. ..+....|.-.| -..|++..|.++|.||.-.= +.
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG------------------vi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG------------------VIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc------------------eEEecCceEEEecCccccccccc
Confidence 3999999999999999999876432 222222221111 12355567999999995332 22
Q ss_pred HH------hhccCcccceEEEEeccC
Q 000570 904 LR------SRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 904 lr------~rgl~~aDiaILVVDa~~ 923 (1415)
-+ ...++.+|++++|+|+..
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCc
Confidence 22 233566999999999965
No 372
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.64 E-value=6.7e-05 Score=81.77 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV 850 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v 850 (1415)
..|+|+|.+|+|||||+|+|++...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4599999999999999999997543
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00049 Score=82.20 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=57.9
Q ss_pred cCcccceEEEEeccCCCChhHHHHH-HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
+.++|.+|+|++....+....++-| ..+...++|+|||+||+|++..+ . .. .+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~---------------~~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RA---------------FVNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HH---------------HHHHHH
Confidence 4668999999998766665544433 44556789999999999996310 0 00 011111
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+... .+++|++||++|.||.+|+..|..
T Consensus 176 ~~y~~~---------------g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNI---------------GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhC---------------CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 112111 158999999999999999988764
No 374
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.58 E-value=0.0003 Score=72.67 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=101.0
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
++=+..|+++|..-.|||||+-...+..... ..||..|..+... +..+... .-.+.|||..|++.|
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de----~~~q~~GvN~mdk------t~~i~~t----~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDE----EYTQTLGVNFMDK------TVSIRGT----DISFSIWDLGGQREF 82 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHH----HHHHHhCccceee------EEEecce----EEEEEEEecCCcHhh
Confidence 3444559999999999999999987654431 1234444332211 1111100 013789999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhH-HHHHHHHHhcCC--ceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~~v--P~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.++..-+...+-.+|+++|....-+-.. .++.++++..|. --|++.+|.|+.-.. ..+...++..
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I~~-------- 150 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETISR-------- 150 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHHHH--------
Confidence 9999988888889999999987443332 344577777663 235679999975321 1111111111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
+.+.+. . --+.++|.+|+-...||..++..+.
T Consensus 151 ----------qar~YA-------k----~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 151 ----------QARKYA-------K----VMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred ----------HHHHHH-------H----HhCCcEEEeeccccccHHHHHHHHH
Confidence 111110 0 0125899999999999998887654
No 375
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.58 E-value=0.00011 Score=85.78 Aligned_cols=55 Identities=27% Similarity=0.478 Sum_probs=42.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
...|+|+|.+|+|||||+|+|++..+ ..+...|+|.++..+.+ ..++.||||||.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtPGi 176 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-------------------GKGLELLDTPGI 176 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-------------------CCcEEEEECCCc
Confidence 45699999999999999999998765 55667888877632221 135899999996
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.56 E-value=0.00018 Score=77.21 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCcchhhH----Hhhc--cCcccceEEEEeccCCCChhHHHH-HHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l----r~rg--l~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||...+... .... ....|.+||||++..+. .+... ..++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 456899999998643211 1111 23489999999986543 23333 33444455 366788999986
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00023 Score=85.46 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=58.4
Q ss_pred cCcccceEEEEeccCCCChhHH-HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
+..+|.+++|+++...+.+..+ .+|..+...++|.|||+||+|++.. . ....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~------~---------------------~~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED------A---------------------EEKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC------H---------------------HHHH
Confidence 4678999999999888887544 4556678889999999999999631 0 0011
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1121111 23689999999999998887765
No 378
>PRK10867 signal recognition particle protein; Provisional
Probab=97.55 E-value=0.00016 Score=88.39 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCcchhh-HHh-----hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~-lr~-----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~ 952 (1415)
...+.||||||...+.. ++. .....++.++||+|++.| ......+..+.. .++ .-|++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 35699999999544311 111 112346788999998754 222233332222 232 3577899995
No 379
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.53 E-value=0.00019 Score=84.84 Aligned_cols=68 Identities=28% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC--------ChhHHHHHHHHH---h----cCCceEEEEEec
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLLK---M----RNTEFIVALNKV 950 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv--------~~QT~E~l~llk---~----~~vP~IVaINKi 950 (1415)
....+.+||++|+..+...|...+..++++|+|||..+-- ...-.+++.++. . .++|+||++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 3456889999999999999999999999999999997621 122233333332 2 468999999999
Q ss_pred ccc
Q 000570 951 DRL 953 (1415)
Q Consensus 951 D~~ 953 (1415)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 975
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.53 E-value=5.6e-05 Score=90.82 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=65.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc------cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.|.|+|.+|+|||||+|+|++... ..+..+|+|.++..+ +. ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~-----------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL-----------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee-----------------CCCCEEEECCCCCC
Confidence 599999999999999999997432 233445556554322 11 13478999999654
Q ss_pred hhhHHh----------hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 901 FTNLRS----------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 901 F~~lr~----------rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.. .-.......+++++..+.+.-.-+..+..+...+..|++++++.+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 322111 11123455667777665443333333344444566788888888776
No 381
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.52 E-value=0.00016 Score=76.20 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
...+.||||||..... ...+..+|.+|+|+...- ...+..+.. -.+..--+|+|||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 4579999999965333 346778999999987762 222222221 333445689999998
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.52 E-value=0.00015 Score=84.02 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=41.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+...|+|+|.+|+|||||+|+|++..+ ..+...|+|.....+.+ ..++.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-------------------SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-------------------CCCEEEEECCCc
Confidence 345699999999999999999997653 44566777765432221 125899999996
No 383
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.50 E-value=0.00017 Score=77.41 Aligned_cols=56 Identities=32% Similarity=0.601 Sum_probs=39.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.+.|+++|.+++|||||+++|++.++. .+...|+|.+...+.++ .++.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 3356999999999999999999987652 33344555554332221 35899999996
No 384
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.00022 Score=87.11 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCcchhhH-Hh-----hccCcccceEEEEeccCCCChhHHHHHHHHH-hcCCceEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTNL-RS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l-r~-----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiD~ 952 (1415)
...+.||||||...+... +. .....+|.++||+|++.| .........+. ..+ ..=|++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~-i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLG-LTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCC-CCEEEEeCccC
Confidence 346999999995433211 11 123347889999999754 23333333332 223 23567999995
No 385
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00044 Score=85.81 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEee-------c---eeEecc--------------cccceee---
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------G---ATYFPA--------------ENIRERT--- 876 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~i-------g---a~~~~~--------------~~i~~~t--- 876 (1415)
++-.|+|.|.+++||||++|++++..+..+..+-+|.-. | ....+. ..+..-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 566799999999999999999997665443333222100 0 000000 0000000
Q ss_pred -----eeccc-c-cccCCCCEEEEeCCCCcc---hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEE
Q 000570 877 -----RELKA-N-ATLKVPGLLVIDTPGHES---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946 (1415)
Q Consensus 877 -----~~v~~-~-~~~~~~~l~iIDTPGHe~---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVa 946 (1415)
+.++. . +.+--..+.+||.||... ++.......-.+|+.|||+.+..-++......+......+-.++|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 00000 0 111112589999999643 4444444555689999999998755544444444444443345667
Q ss_pred EEecccc
Q 000570 947 LNKVDRL 953 (1415)
Q Consensus 947 INKiD~~ 953 (1415)
.||+|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7788985
No 386
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00033 Score=83.44 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..+|+|+|+.|+||||++.+|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566799999999999999999864
No 387
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00038 Score=84.09 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-ccccccCc-ee---Eeecee----------EecccccceeeeecccccccCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGG-IT---QQIGAT----------YFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagG-IT---q~iga~----------~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+..+|+|+|.+|+||||++.+|.... ...|..-+ ++ +.+++. .+|...... ...+.....-...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~~ 300 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDGS 300 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCCC
Confidence 45579999999999999999986421 11111000 11 111100 000000000 0000000011245
Q ss_pred CEEEEeCCCCcchhhH-H---h---hc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNL-R---S---RG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~l-r---~---rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+.||||||+...... . . +. .....-.+||+|++.|... ....+......+ +-=+++||+|-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCC-CCEEEEEcccCC
Confidence 6999999997543211 1 1 11 1224568899999875322 223333333333 345679999975
No 388
>PTZ00121 MAEBL; Provisional
Probab=97.47 E-value=0.00048 Score=89.66 Aligned_cols=14 Identities=43% Similarity=0.316 Sum_probs=6.1
Q ss_pred cccCCcccccccCC
Q 000570 30 VIDDDEYSIGTELT 43 (1415)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (1415)
|||+--|+.=|-||
T Consensus 1001 vI~k~N~fsfTALs 1014 (2084)
T PTZ00121 1001 VIDKENHFSFTALT 1014 (2084)
T ss_pred eecCcchhhhhhcc
Confidence 44444444444444
No 389
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.43 E-value=0.00036 Score=66.12 Aligned_cols=74 Identities=31% Similarity=0.464 Sum_probs=59.2
Q ss_pred cccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+. ..+.|+.-+|..|.|+.|.++.+ +.+ ..+.|.||+.++.++.+|..|+.|+|.|.+.+ . +++.
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~---~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~-------~-~~i~ 76 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVD-------A-KDLE 76 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC---ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCC-------H-HHcC
Confidence 5542 23345555999999999999998 444 47999999999999999999999999997643 2 5888
Q ss_pred CCCeEEE
Q 000570 1373 IEDELVS 1379 (1415)
Q Consensus 1373 ~~d~l~s 1379 (1415)
.|++|.|
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9998865
No 390
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00047 Score=79.56 Aligned_cols=127 Identities=19% Similarity=0.156 Sum_probs=62.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeE---eecee----------Eecccccceeeeecccc----ccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQ---QIGAT----------YFPAENIRERTRELKAN----ATL 885 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq---~iga~----------~~~~~~i~~~t~~v~~~----~~~ 885 (1415)
+.++|+|+|.+|+|||||+..|...-...+. .+-|+. .+++. .++..... ....+... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEE 152 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHhc
Confidence 4578999999999999999988643211111 111111 11110 00000000 00000000 011
Q ss_pred CCCCEEEEeCCCCcchhhH-----Hh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 886 KVPGLLVIDTPGHESFTNL-----RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~l-----r~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....+.||||||+..+... .. ......|.++||++++.+-. .....+......+ +-=+++||+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 2357999999997643221 11 12334677899999865221 2222333333322 345789999985
No 391
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00057 Score=82.62 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=63.4
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCc-----eeEe---ecee----------Eecccccceeeeeccc-cc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG-----ITQQ---IGAT----------YFPAENIRERTRELKA-NA 883 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagG-----ITq~---iga~----------~~~~~~i~~~t~~v~~-~~ 883 (1415)
.++.+|+++|++|+||||++..|...-...+...| ||.+ +++. .+|+...... ..+.. -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHHH
Confidence 34568999999999999999988632111100001 1111 1110 0010000000 00000 01
Q ss_pred ccCCCCEEEEeCCCCcchhhH----HhhccCc--cc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNL----RSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~l----r~rgl~~--aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+....+.||||||+..+..+ ....+.. ++ -.+||+|++.|..... +.+......+ +-=+++||+|-.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 224467999999996543321 1112221 23 5889999988733222 3333333222 445789999975
No 392
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.43 E-value=0.0013 Score=78.66 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
+-|+.+|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4588999999999999999999853
No 393
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.42 E-value=0.00024 Score=76.95 Aligned_cols=124 Identities=23% Similarity=0.214 Sum_probs=62.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHc-----Cc--ccccccCceeE------eeceeEecccccceeeeeccc--------ccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG-----TN--VQEGEAGGITQ------QIGATYFPAENIRERTRELKA--------NAT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~-----t~--v~~geagGITq------~iga~~~~~~~i~~~t~~v~~--------~~~ 884 (1415)
|+++|.|..||||||||++|+. .+ +...+.|.+.. ..|.......+.. .+..+.. -..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gc-icc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGC-ICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTT-ESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCC-cccccHHHHHHHHHHHHH
Confidence 7899999999999999999994 11 11112221110 0011111111100 0011100 011
Q ss_pred cC--CCCEEEEeCCCCcchhhHH-----hhccCcccceEEEEeccCCCChhH--HHHHHHHHhcCCceEEEEEecccc
Q 000570 885 LK--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 885 ~~--~~~l~iIDTPGHe~F~~lr-----~rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.. .+.+.||-|.|......+. ....-..+.+|.|||+.+-....+ .....++... =+|++||+|++
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---DvIvlnK~D~~ 154 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---DVIVLNKIDLV 154 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---CEEEEeccccC
Confidence 12 4689999999966655551 111233678999999955311111 1222334433 48999999997
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00086 Score=81.69 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccc-c-ccCc-eeE---eecee----------EecccccceeeeecccccccCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQ---QIGAT----------YFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-g-eagG-ITq---~iga~----------~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
...+|+|+|..|+|||||+..|.+..+.. + ...+ |+. .+|+. .+|.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45579999999999999999886532111 1 1111 111 11110 0111000000000000112345
Q ss_pred CCEEEEeCCCCcchhhHH-----h-hccCcccceEEEEeccCCCChhHHH-HHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-----S-RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-----~-rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.||||+|........ . .......-.+||++++.+ .++.. .+......+ +-=+++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 679999999965432211 1 122234567899998752 33333 233333333 334679999975
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00034 Score=90.02 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccc-c-Cce---eEeeceeE----------ecccccceeeeeccc-ccccCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE-A-GGI---TQQIGATY----------FPAENIRERTRELKA-NATLKV 887 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge-a-gGI---Tq~iga~~----------~~~~~i~~~t~~v~~-~~~~~~ 887 (1415)
.-+|+|+|+.|+||||++.+|..... ..|. . .-| |..+|+.. +|....... ..+.. -..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~-~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDA-ADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCH-HHHHHHHHHhcC
Confidence 34799999999999999999975432 1111 0 011 22222210 010000000 00000 002334
Q ss_pred CCEEEEeCCCCcchhh-HHh-----hccCcccceEEEEeccCCCChhHHH-HHHHHHhc-CC-ceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~-lr~-----rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~-~v-P~IVaINKiD~~ 953 (1415)
..++||||||...... ++. ......+-.+||+|++. ..+++. ++...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 5799999999432211 111 11234567899999875 233322 22333221 11 334779999975
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.00075 Score=82.79 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCcchhh----HHhhc---cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTN----LRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~----lr~rg---l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..+.. ..... .....-++||++++.+.. .....+..+...++ --|++||+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 45799999999755421 11111 223446688888865321 12233344443332 35889999975
No 397
>PRK12289 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.0002 Score=85.56 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.7
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 170 L~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 170 LRNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred hccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 344568999999999999999999653
No 398
>PRK12288 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.0002 Score=85.51 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.9
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 203 L~~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 203 LTGRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred HhhCCEEEECCCCCCHHHHHHHhcccc
Confidence 344568999999999999999999654
No 399
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.36 E-value=0.00069 Score=64.94 Aligned_cols=82 Identities=18% Similarity=0.376 Sum_probs=58.4
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC-CcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~-g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
|++.|.++|.+.|.|+++++.|..|+|++||.+.+++.. +. ....+|+++++|+..+..| ..+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-------------~~~~~V~sI~~~~~~~~~a~aGd~v 67 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-------------FRPVTVKSIHRNRSPVRVVRAGQSA 67 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-------------EeEEEEEEEEECCeECCEECCCCEE
Confidence 467899999999999999999999999999999987653 21 0134556666666655543 347
Q ss_pred eeeccccccccCCCceEEe
Q 000570 1124 KITAQGLEHAIAGTGLYVV 1142 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v~ 1142 (1415)
.|.+.+++......+++++
T Consensus 68 ~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 68 SLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEcCCCHHHcCCccEEe
Confidence 7777777654444555443
No 400
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.35 E-value=0.00049 Score=80.31 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=56.2
Q ss_pred cCcccceEEEEeccCCC-ChhHHH-HHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
+..+|++|||+|+.... ....++ ++..+...++|+|+|+||+|+... .. . ...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~----------------~~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---E----------------ELE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---H----------------HHH
Confidence 67799999999998876 444333 445566788999999999999621 00 0 000
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+.. ..++++++||.+|.||..|+..|.
T Consensus 131 ~~~~~~---------------~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALA---------------LGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHh---------------CCCeEEEEECCCCccHHHHHhhhc
Confidence 000111 125899999999999988877654
No 401
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.32 E-value=0.0012 Score=90.68 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=67.3
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeecee-EecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGAT-YFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~-~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
.+.-|-.+|||..|+||||||... +-.+..... ..-+..++.+ ++.| |-.....||||+|.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w---------------wf~~~avliDtaG~ 171 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW---------------WFTDEAVLIDTAGR 171 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce---------------EecCCEEEEcCCCc
Confidence 455678999999999999999986 222221110 0001111111 0111 11235789999992
Q ss_pred c---------------chhhHH--hhccCcccceEEEEeccCCCC--hhH-HHHHHHH--------Hh--cCCceEEEEE
Q 000570 899 E---------------SFTNLR--SRGSGLCDIAILVVDIMHGLE--PQT-IESLNLL--------KM--RNTEFIVALN 948 (1415)
Q Consensus 899 e---------------~F~~lr--~rgl~~aDiaILVVDa~~Gv~--~QT-~E~l~ll--------k~--~~vP~IVaIN 948 (1415)
. .|..+. .|--.-.|+|||+||+.+=+. ++. ..+...+ .. ..+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 2 123322 233456899999999976442 111 1111111 12 3579999999
Q ss_pred ecccccC
Q 000570 949 KVDRLYG 955 (1415)
Q Consensus 949 KiD~~~~ 955 (1415)
|||++.|
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999875
No 402
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.31 E-value=0.00077 Score=81.14 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=64.0
Q ss_pred CcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 898 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 898 He~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++|..+.......++++|+|||+.+-...-..+...++ .+.|+|+|+||+|++..+ ... .. +.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~~-~~-------~~- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VNL-SK-------IK- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CCH-HH-------HH-
Confidence 467888888888889999999999764432222222332 268999999999997311 000 00 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.-+...+...|+. ...++++||++|.||.+|+..|..
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHH
Confidence 0011123333332 125889999999999999988754
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.001 Score=82.25 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
..||+|+|..|+||||++.+|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999753
No 404
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.27 E-value=0.0015 Score=70.54 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....+.|||||+.... .....+..+|.+|+|+.....-...+...+.+++..++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 3467999999976433 33445678999999999886555667778888888899999999999963
No 405
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.26 E-value=0.00034 Score=83.52 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=61.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-cccccCc--eeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-~~geagG--ITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|.+++|||||+++|++..+ .....+. |...+|...+|...+...+..+. ........+.|+|.||...
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccchh
Confidence 489999999999999999998876 4443333 44555666555432111111111 1111223589999999432
Q ss_pred ----hhhHHhhccCcccceEEEEeccC
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
+.+-....++.||++++||++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 44455566778999999999853
No 406
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.26 E-value=0.00087 Score=64.17 Aligned_cols=82 Identities=18% Similarity=0.368 Sum_probs=60.5
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc---cee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ---GIK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~---gv~ 1124 (1415)
|++.|.++|.+.|.|+++.+.|.+|+|++||.|.++++... ....|+++++|+..+..|. .+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~--------------~~~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET--------------LKTTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC--------------ceEEEEEEEECCcCCCEECCCCEEE
Confidence 56789999999999999999999999999999988764211 2244666667777666553 378
Q ss_pred eeccccccccCCCceEEeC
Q 000570 1125 ITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1125 i~~~gL~~~~aG~~~~v~~ 1143 (1415)
|.+.+++......+++++.
T Consensus 67 l~l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 67 VLLRGVKREDVERGMVLAK 85 (87)
T ss_pred EEECCCCHHHcCCccEEec
Confidence 8888876655555666554
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.23 E-value=0.00039 Score=82.35 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=42.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+...|.|+|.+++|||||+|+|++... ..+..+|+|.++-...+. .++.|+||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 344599999999999999999998765 566777888665332221 35999999994
No 408
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.21 E-value=0.0015 Score=62.05 Aligned_cols=78 Identities=15% Similarity=0.329 Sum_probs=55.6
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
||++.|.+++.+. .|+++.|.|.+|+|++||.|.+++++ .. ..|+++++++..+..| ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ES--------------VEVKSIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cE--------------EEEEEEEECCeECCEECCCCEE
Confidence 4788999999888 99999999999999999999987753 22 3455556666555543 336
Q ss_pred eeeccccccccCCCceEE
Q 000570 1124 KITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v 1141 (1415)
.+.+.+++......+.++
T Consensus 64 ~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 64 RLKLKGIDEEDISPGDVL 81 (83)
T ss_pred EEEECCCCHHHCCCCCEE
Confidence 777777665434444443
No 409
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.18 E-value=0.00041 Score=80.18 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.9
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
..+..-+.+++|+.|+|||||||+|...
T Consensus 160 ~~l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 160 ELLAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred HHhcCCeEEEECCCCCcHHHHHHhhCch
Confidence 3466668999999999999999999863
No 410
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.10 E-value=0.00091 Score=70.45 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=35.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..|+++|.+++|||||+++|++.... .+...|+|.++..+.. ..++.||||||.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 44899999999999999999865432 2334444433211111 125899999994
No 411
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.002 Score=71.10 Aligned_cols=114 Identities=22% Similarity=0.217 Sum_probs=70.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
|.|.+|||--+|||++.....+.. ...+ |.-+-.+.-+ +.. ........+.+||.||+.+|..-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkM-sPne----TlflESTski-------~~d---~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKM-SPNE----TLFLESTSKI-------TRD---HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeecc-CCCc----eeEeeccCcc-------cHh---hhhhhhcceEEeecCCccccCCCc
Confidence 559999999999999877655421 1111 1000000000 000 00001135889999998876432
Q ss_pred --HhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcC----CceEEEEEeccccc
Q 000570 905 --RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 905 --r~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiD~~~ 954 (1415)
..+-.+.|-..|+|||+.+.. .+-|+-++-..+.++ +.|=|+|.|+|-+.
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 234466788999999997754 356666776777664 56889999999763
No 412
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.05 E-value=0.00069 Score=77.28 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 455679999999999999999998653
No 413
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.99 E-value=0.0024 Score=75.61 Aligned_cols=127 Identities=21% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEee---ceeEeccccccee--eeeccccc---------
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI---GATYFPAENIRER--TRELKANA--------- 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~i---ga~~~~~~~i~~~--t~~v~~~~--------- 883 (1415)
+-|+.+|.|.-|+||||||++|+... |...+.|.+..+- +.....+..+..- |+.+....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45889999999999999999998531 1122333222110 0000001111111 11111100
Q ss_pred cc----CCCCEEEEeCCCCcchhhHHhhc--------cCcccceEEEEeccCCCChhH--HHHHHHHHhcCCceEEEEEe
Q 000570 884 TL----KVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 884 ~~----~~~~l~iIDTPGHe~F~~lr~rg--------l~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVaINK 949 (1415)
.. ..+...||-|.|..+-..+.... .-..+.+|.|||+.++..... .....++... =+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEEEec
Confidence 00 13678999999976544333221 123588999999987543211 1122333333 4899999
Q ss_pred cccc
Q 000570 950 VDRL 953 (1415)
Q Consensus 950 iD~~ 953 (1415)
+|++
T Consensus 160 ~Dl~ 163 (318)
T PRK11537 160 TDVA 163 (318)
T ss_pred cccC
Confidence 9997
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.97 E-value=0.00096 Score=77.89 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=24.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV 850 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v 850 (1415)
.+++.+++|+|++|+|||||++.|++...
T Consensus 158 ~L~~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 158 YLKGKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred hhccceEEEECCCCCCHHHHHHHHhchhh
Confidence 35567899999999999999999987543
No 415
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=96.91 E-value=0.0042 Score=58.85 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=53.4
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
||++.|.++|.. .|+++.+.|.+|+|++||.+.+++++ .. ..|+++++++..+..+ ..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--TQ--------------VEVLSIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--cE--------------EEEEEEEECCEECCEECCCCEE
Confidence 478899998865 38999999999999999999987753 22 3455556665555433 447
Q ss_pred eeeccccccccCCCceEE
Q 000570 1124 KITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v 1141 (1415)
.|.+.+++......+.++
T Consensus 63 ~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 63 RLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEecCCCHHHCCCCCEE
Confidence 777777665444444443
No 416
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.90 E-value=0.0013 Score=76.05 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccc-eeeeecccccccCCCCEEEEeCCCCc---
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGHE--- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~-~~t~~v~~~~~~~~~~l~iIDTPGHe--- 899 (1415)
.++.|+|+|.+++|||||++.|+.++...+..+-.|++.....++....+ ..+..+......-.-.|+|+|+.|..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 34569999999999999999999988776666666665543333322111 01111111100011249999999842
Q ss_pred ----chhhHHhhccCcccceEEEEeccC
Q 000570 900 ----SFTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 900 ----~F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
-..|-....++.||.++-||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 234445556777999999998854
No 417
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.88 E-value=0.0022 Score=70.64 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=71.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|.+||.+|+|||+|=..+...-++ +....|-|+++-...+.+ +.+--|++||+.|++.|....
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf---------------lGnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF---------------LGNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh---------------hhhheeehhccCCcHHHHHHH
Confidence 4899999999999987766533222 122334444442222111 111248999999999886543
Q ss_pred h-----hccCcccceEEEEeccCCCChhHHH----HHHHHHhc--CCceEEEEEeccccc
Q 000570 906 S-----RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRLY 954 (1415)
Q Consensus 906 ~-----rgl~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~--~vP~IVaINKiD~~~ 954 (1415)
. .-++..+++|+|+|+...-....+. .|..+... ...+++.+.|+|++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 3 4577789999999997643333333 34444433 246889999999973
No 418
>PRK00098 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.0013 Score=77.13 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999998653
No 419
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.85 E-value=0.0031 Score=67.40 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=47.2
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~ 953 (1415)
.+.|||||+...+. ....+..+|.+|+|++....-...+...+..+...+.+ +.|++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999999865443 34456789999999998766556666667777766654 67899999863
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.84 E-value=0.0031 Score=75.55 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccc---cccCceeE---eeceeEe--cccccceeee-eccc-------ccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQE---GEAGGITQ---QIGATYF--PAENIRERTR-ELKA-------NATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~---geagGITq---~iga~~~--~~~~i~~~t~-~v~~-------~~~~~~~ 888 (1415)
.-+|+++|++|+||||.|-+|-..-+.. ..-+=||. .|||..- .+..+..... .+.. -..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5679999999999999999886432200 11112332 2333100 0000000000 0000 0123456
Q ss_pred CEEEEeCCCCcchhhHHh----hccC--cccceEEEEeccCCCChhH-HHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRS----RGSG--LCDIAILVVDIMHGLEPQT-IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~----rgl~--~aDiaILVVDa~~Gv~~QT-~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+.||||.|+..+..+.. ..+. ...-..||++++. ...+ .+.+...+..++- =+++||+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 799999999765533322 1122 2345667888754 2222 2334444444432 3568999975
No 421
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=96.84 E-value=0.0039 Score=60.27 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=60.1
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1294 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1294 ~vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
.+|+ ...+.|+..+|..|.|+.|..+++ +.+ ....|.||+.++.++..|..|+.|+|.|.+.+. ..+
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~--------~~v 79 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK--------KDI 79 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCH--------HHc
Confidence 3665 234567777999999999999987 554 479999999999999999999999999987532 257
Q ss_pred cCCCeEEE
Q 000570 1372 DIEDELVS 1379 (1415)
Q Consensus 1372 ~~~d~l~s 1379 (1415)
..|++|.+
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 77887754
No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0013 Score=73.07 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCEEEEeCC-CCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC-CceEEEEEeccc
Q 000570 888 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTP-GHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiD~ 952 (1415)
..+.|+||- |.+.|..-+ ...||++|+|||.+.--......+-.+....+ .++.|++||+|-
T Consensus 134 ~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 458888984 677776433 34599999999986522222333445666788 699999999996
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.81 E-value=0.0018 Score=74.49 Aligned_cols=57 Identities=25% Similarity=0.481 Sum_probs=41.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.|.|+|-+|+|||||+|+++... +..|...|+|+.+...+.-. ..+.+.+|||||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~----------------~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS----------------HRPPVYLIDTPGI 206 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec----------------cCCceEEecCCCc
Confidence 458999999999999999998533 34566778888876532211 1256999999994
No 424
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.81 E-value=0.0053 Score=58.15 Aligned_cols=68 Identities=19% Similarity=0.415 Sum_probs=51.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc---cccee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a---a~gv~ 1124 (1415)
|++.|.++|.+.|.|+++.+.|.+|+|++|+.+.+.++. .. ..|++++.++..+.. +..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~--------------~~V~sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EE--------------TRVRSIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ce--------------EEEEEEEECCcCcCEEcCCCEEE
Confidence 578899999999999999999999999999999887643 22 345556666665543 34477
Q ss_pred eeccccc
Q 000570 1125 ITAQGLE 1131 (1415)
Q Consensus 1125 i~~~gL~ 1131 (1415)
|.+.++.
T Consensus 65 i~l~~~~ 71 (83)
T cd03696 65 LNLTGVD 71 (83)
T ss_pred EEEcCCC
Confidence 7777664
No 425
>PRK13796 GTPase YqeH; Provisional
Probab=96.78 E-value=0.0014 Score=79.12 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=36.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
..|.|+|.+|+|||||+|+|+... +..+..+|+|.++-. ++. ..+..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l-----------------~~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPL-----------------DDGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEc-----------------CCCcEEEECCCcc
Confidence 358999999999999999998543 122334455544321 111 1246899999964
No 426
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.0026 Score=71.49 Aligned_cols=137 Identities=18% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccC----ceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geag----GITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
-+..|..+|.+|.|||||++.|.++++...... ++--+...|.+...+++ -.|+|+||-|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeecccc
Confidence 345588899999999999999999987654322 22112111211111111 249999999954
Q ss_pred c------------------hhhH------Hhhc-----cCcccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEe
Q 000570 900 S------------------FTNL------RSRG-----SGLCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 900 ~------------------F~~l------r~rg-----l~~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINK 949 (1415)
+ |.+. ..|. -+..+++++.|.. .||+.....-.+..|. .++.+|.+|-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHH
Confidence 3 2111 0111 2335677777765 4555554444443333 34678888899
Q ss_pred cccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 000570 950 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996 (1415)
Q Consensus 950 iD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~ 996 (1415)
.|.+. ..++...-..|+..|...|+.
T Consensus 186 aDtis---------------------K~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 186 ADTIS---------------------KEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred hhhhh---------------------HHHHHHHHHHHHHHHHhcCce
Confidence 99862 223333345677888877754
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.73 E-value=0.0069 Score=62.99 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=44.7
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~ 952 (1415)
..+.|||||++.... ....+..||.+|+|++....-...+...+..+... ..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 469999999864433 34567889999999998654344455566555432 3578899999975
No 428
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.73 E-value=0.021 Score=69.12 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCc-------------chhhHHhhccCcccceEEEEeccCCCChh----HHHHHHHHHhcCCceEEEEEec
Q 000570 888 PGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQ----TIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 888 ~~l~iIDTPGHe-------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~Q----T~E~l~llk~~~vP~IVaINKi 950 (1415)
+.+.++|.||.- +...|...++...+.+||||- +|--.. .-.....+.-.|...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 358999999943 344566678899999999984 232111 1123344455678899999999
Q ss_pred ccc
Q 000570 951 DRL 953 (1415)
Q Consensus 951 D~~ 953 (1415)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 996
No 429
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0072 Score=81.10 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCC----C
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----H 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----H 898 (1415)
-|=-+|||++|+||||+|... +-++...+..|-.. .+|..++.| |-...-.+|||.| |
T Consensus 125 LPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw---------------wf~deaVlIDtaGry~~q 188 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW---------------WFTDEAVLIDTAGRYITQ 188 (1188)
T ss_pred CCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc---------------ccccceEEEcCCcceecc
Confidence 345789999999999998753 22222211111110 011011111 1123478999999 3
Q ss_pred c--c---------hhhH--HhhccCcccceEEEEeccCCCC--hhHH-HHHHHHHh----------cCCceEEEEEeccc
Q 000570 899 E--S---------FTNL--RSRGSGLCDIAILVVDIMHGLE--PQTI-ESLNLLKM----------RNTEFIVALNKVDR 952 (1415)
Q Consensus 899 e--~---------F~~l--r~rgl~~aDiaILVVDa~~Gv~--~QT~-E~l~llk~----------~~vP~IVaINKiD~ 952 (1415)
. + |..+ ..|...-.|+|||.+++.+-.+ ++.+ .+...|+. ...|+.|++||+|+
T Consensus 189 ~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 189 DSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred cCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 2 1 2111 3466777999999999987443 3332 12222222 35799999999999
Q ss_pred ccC
Q 000570 953 LYG 955 (1415)
Q Consensus 953 ~~~ 955 (1415)
+++
T Consensus 269 l~G 271 (1188)
T COG3523 269 LPG 271 (1188)
T ss_pred ccc
Confidence 976
No 430
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.61 E-value=0.019 Score=65.62 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
...-|-|+-.|.|.-|+||||||+.|+.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHc
Confidence 3456888889999999999999999984
No 431
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.58 E-value=0.0063 Score=72.83 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-----------CChhHHHHHHHHHh----cCCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKiD~ 952 (1415)
..+.|||++|+..+...|...+..++++|+|||.++- ....++..+..+.. .++|+||++||+|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4589999999999999999999999999999999862 12233344433332 46899999999998
Q ss_pred ccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 953 ~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
... .....++...+...... ..+...+.-|...|....-+ .....+-+..|+|..-.+|..+++.+..
T Consensus 264 ~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 264 FEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred HHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 521 00000111100000000 01122223333444332100 0224567788999998888888877655
Q ss_pred HH
Q 000570 1033 WT 1034 (1415)
Q Consensus 1033 l~ 1034 (1415)
.+
T Consensus 332 ~I 333 (342)
T smart00275 332 II 333 (342)
T ss_pred HH
Confidence 43
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.0041 Score=74.70 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcC------cc---c--cccc------CceeEeeceeEecccccceeeeec-cc---c
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT------NV---Q--EGEA------GGITQQIGATYFPAENIRERTREL-KA---N 882 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t------~v---~--~gea------gGITq~iga~~~~~~~i~~~t~~v-~~---~ 882 (1415)
++.+|.++|--|+||||.+.+|... .+ . ..+. ..+..+++..+|+...-..- ..+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P-v~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP-VEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH-HHHHHHHHHH
Confidence 3456899999999999999887521 11 0 0111 11234555556654211100 001 00 1
Q ss_pred cccCCCCEEEEeCCCCcch-----hhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--Cce-EEEEEeccc
Q 000570 883 ATLKVPGLLVIDTPGHESF-----TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEF-IVALNKVDR 952 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F-----~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~-IVaINKiD~ 952 (1415)
+......+.||||.|-... ..++ ......+|-+|||||++-|-. ..+.++.++ +|+ =|+|||+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccC
Confidence 1122346999999993222 2221 234556899999999998643 223333332 444 378999996
No 433
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.54 E-value=0.011 Score=53.90 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeE
Q 000570 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDEL 1377 (1415)
Q Consensus 1299 ~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l 1377 (1415)
..+.|+.|+|..|.|++|..+.+......+.++|.+|.+.+.++.++..|+.|+|.+...+ .+..||.|
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~----------~~~~g~~l 81 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD----------DIKIGDTL 81 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc----------ccCCCCEe
Confidence 4578999999999999999999854233567899999999999999999999999985431 46666665
No 434
>PRK13796 GTPase YqeH; Provisional
Probab=96.48 E-value=0.01 Score=71.75 Aligned_cols=97 Identities=28% Similarity=0.347 Sum_probs=56.6
Q ss_pred chhhHHhhccCccc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 900 SFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 900 ~F~~lr~rgl~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+|..+.. .+...| ++++|||+.+-.... ...|..+. .+.|+|+|+||+|++.. ....
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~s~-~~~L~~~~-~~kpviLViNK~DLl~~-----~~~~-------------- 115 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNGSW-IPGLHRFV-GNNPVLLVGNKADLLPK-----SVKK-------------- 115 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCCch-hHHHHHHh-CCCCEEEEEEchhhCCC-----ccCH--------------
Confidence 5666443 445455 999999998743222 22222221 36899999999999631 1000
Q ss_pred HHHHHHHHH-HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIV-TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~-~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...+ ..+...|+. ...++++||++|.||.+|+..|..
T Consensus 116 --~~i~~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 116 --NKVKNWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred --HHHHHHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHH
Confidence 0011111 112223321 126899999999999999988754
No 435
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.47 E-value=0.012 Score=55.74 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=48.8
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc-c--ee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ-G--IK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~-g--v~ 1124 (1415)
|++.|.++|...+.|+.+++.|.+|+|++||.+.+++++ . ...|+++++|+..+..+. | +.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v~ 64 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--K--------------TSRVKSIETFDGELDEAGAGESVT 64 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--C--------------eEEEEEEEECCcEeCEEcCCCEEE
Confidence 578999999888888889999999999999999987643 2 234666667776665443 2 55
Q ss_pred eeccc
Q 000570 1125 ITAQG 1129 (1415)
Q Consensus 1125 i~~~g 1129 (1415)
|.+.+
T Consensus 65 l~l~~ 69 (81)
T cd03695 65 LTLED 69 (81)
T ss_pred EEECC
Confidence 55543
No 436
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.44 E-value=0.0063 Score=65.82 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.3
Q ss_pred cceEEEEeccCCCChhHHHHHHH--HHhcCCceEEEEEecccc
Q 000570 913 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 913 DiaILVVDa~~Gv~~QT~E~l~l--lk~~~vP~IVaINKiD~~ 953 (1415)
|++|+|||+...+.......+.+ +...+.|+|+++||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999877766666666 555678999999999997
No 437
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.44 E-value=0.0064 Score=72.05 Aligned_cols=71 Identities=25% Similarity=0.197 Sum_probs=53.3
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC--------CChhHHHHHHHHHh-------cCCceEEEE
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------LEPQTIESLNLLKM-------RNTEFIVAL 947 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G--------v~~QT~E~l~llk~-------~~vP~IVaI 947 (1415)
+.++...+-++|++|+.+-..-|....-.++++|+||+.++= .+..-.+++.+... .+++||+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 445566799999999988888888888899999999998641 22233444444432 368999999
Q ss_pred Eecccc
Q 000570 948 NKVDRL 953 (1415)
Q Consensus 948 NKiD~~ 953 (1415)
||+|+.
T Consensus 270 NK~DLF 275 (354)
T KOG0082|consen 270 NKKDLF 275 (354)
T ss_pred ecHHHH
Confidence 999985
No 438
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.42 E-value=0.0058 Score=60.82 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t 848 (1415)
.|+++|+.|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 4899999999999999999643
No 439
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.39 E-value=0.0021 Score=77.88 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=45.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC--Ccchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--HESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG--He~F~ 902 (1415)
.+|+++|.+|+||||+||+|.+.. |....++|-|.|+-.+++. +.+.|.|||| ..+|.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 458999999999999999999875 4456677888776554443 4689999999 45565
Q ss_pred h
Q 000570 903 N 903 (1415)
Q Consensus 903 ~ 903 (1415)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 4
No 440
>PRK13695 putative NTPase; Provisional
Probab=96.38 E-value=0.01 Score=63.98 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.5
Q ss_pred ccCcccceEEEEe---ccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 908 GSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 908 gl~~aDiaILVVD---a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
.+..+|+ ||+| ..+...++.++.+..+...+.|+|+++|+..
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 3445666 7888 6666778888888888788999999999843
No 441
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.33 E-value=0.0094 Score=63.82 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~ 953 (1415)
...+.|||||+...-..+....+..+|.+|+|+....--...+...+..++..+++++ +++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 4569999999974322221111367899999998876556778888899999898764 789998853
No 442
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.033 Score=69.57 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000570 534 EEEERLRKEEEERKRLEELERQA-EEAKRRKKEKEKE 569 (1415)
Q Consensus 534 eeEE~~r~eEEe~~~~ee~er~~-ee~~~~k~~~~ke 569 (1415)
..|-++.||||++++.+++|+.+ +-++.|+-+.++.
T Consensus 380 QReiE~qrEEerkkeie~rEaar~ElEkqRqlewEra 416 (1118)
T KOG1029|consen 380 QREIERQREEERKKEIERREAAREELEKQRQLEWERA 416 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444444332 2334444444444
No 443
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.28 E-value=0.025 Score=75.44 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.3
Q ss_pred EEEcchhhch
Q 000570 1250 IFIADIIYHL 1259 (1415)
Q Consensus 1250 I~~~~IIY~L 1259 (1415)
.+....||.|
T Consensus 998 ~~~~~~~~~~ 1007 (1021)
T PTZ00266 998 TLQKRNMYAL 1007 (1021)
T ss_pred eeeccchHHH
Confidence 3344444544
No 444
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.26 E-value=0.0096 Score=59.09 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC----ceEEEEEe
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 949 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v----P~IVaINK 949 (1415)
.+.|||||+..... ....+..||.+|+|++....-...+...+.+++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975543 3346778999999998876555566666666666553 56688885
No 445
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.22 E-value=0.0018 Score=67.68 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
|+|+|+|+.|+|||||+..|...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 446
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.22 E-value=0.022 Score=70.36 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=62.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|.++|.-++|||.||+.+++..+..+..+.++..+....+... . ....+.+-|.+-. ....+...
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~------------g--~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK------------G--QQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec------------c--ccceEEEeecCcc-ccccccCc
Confidence 8899999999999999999876665332222221111111100 0 0012445555432 22222222
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHHHH-----HhcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~ll-----k~~~vP~IVaINKiD~~ 953 (1415)
-..||+++||+|... |....++..+ ....+|+++|.+|+|+-
T Consensus 493 -e~~cDv~~~~YDsS~---p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 -EAACDVACLVYDSSN---PRSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -cceeeeEEEecccCC---chHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 267999999999985 3333333222 12678999999999995
No 447
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.21 E-value=0.015 Score=55.83 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=58.3
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEee-cCC-ceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~-~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
+|+ +..+.|+.-+|..|.|++|..+.+ +.+ ...+..+|.||+.++..+.+|..|+.|+|.|.+.+. .++
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 79 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR--------SLL 79 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH--------HHc
Confidence 554 344567777999999999999987 542 123579999999999999999999999999976532 145
Q ss_pred cCCCeEE
Q 000570 1372 DIEDELV 1378 (1415)
Q Consensus 1372 ~~~d~l~ 1378 (1415)
..|++|.
T Consensus 80 ~~G~vl~ 86 (87)
T cd03694 80 RKGMVLV 86 (87)
T ss_pred CCccEEe
Confidence 5666664
No 448
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.035 Score=69.45 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 000570 530 RKKREEEERLRKEE 543 (1415)
Q Consensus 530 ~~~reeEE~~r~eE 543 (1415)
+++||||+++++++
T Consensus 384 E~qrEEerkkeie~ 397 (1118)
T KOG1029|consen 384 ERQREEERKKEIER 397 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 449
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=96.17 E-value=0.017 Score=54.75 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=56.6
Q ss_pred cccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccC
Q 000570 1295 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1373 (1415)
Q Consensus 1295 vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~ 1373 (1415)
+|+...+.|+.-+|..|.|++|..+.+ +.+ ...+|.||+.++.++.+|..|+.|+|.|.+.+. ..+..
T Consensus 9 v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~--------~~v~~ 77 (83)
T cd03698 9 KYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDE--------EDISP 77 (83)
T ss_pred EEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEECCCCH--------HHCCC
Confidence 554224556666999999999999987 554 358999999999999999999999999986532 14556
Q ss_pred CCeEE
Q 000570 1374 EDELV 1378 (1415)
Q Consensus 1374 ~d~l~ 1378 (1415)
|++|.
T Consensus 78 G~vl~ 82 (83)
T cd03698 78 GDVLC 82 (83)
T ss_pred CCEEe
Confidence 66663
No 450
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.14 E-value=0.014 Score=55.05 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=56.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-H
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-r 905 (1415)
+|+|.|..|+||||+...|...-... |. ++ ...+ .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~----g~--~v----~~~~------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR----GK--RV----LLID------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC----CC--eE----EEEC------------------CEEEEeCCCCccchhhhh
Confidence 47889999999999999886432111 10 00 0000 4899999986554432 2
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEE
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 948 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaIN 948 (1415)
...+..+|.+++|++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456678999999988764443333321 222223456666665
No 451
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.02 E-value=0.017 Score=63.15 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcc-hh-----hHHhhccCccc---ceEEEEeccCCCC-----hhHHHHHHHHHhcCCceEEEEEeccccc
Q 000570 889 GLLVIDTPGHES-FT-----NLRSRGSGLCD---IAILVVDIMHGLE-----PQTIESLNLLKMRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 889 ~l~iIDTPGHe~-F~-----~lr~rgl~~aD---iaILVVDa~~Gv~-----~QT~E~l~llk~~~vP~IVaINKiD~~~ 954 (1415)
.++|+|+||+-. |+ ....+.+.+-+ ++|+++|+.--+. .....++..+-...+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 589999999432 32 22233333322 3566666532111 2223344445567899999999999985
No 452
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.02 E-value=0.031 Score=64.96 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=71.6
Q ss_pred cCcccceEEEEeccCC-CChh-HHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHG-LEPQ-TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~G-v~~Q-T~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
....|-+||||.+.++ +... --.+|-++...++..||+|||+|++.. ... .. ...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~---------------~~--~~~ 133 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEA---------------AV--KEL 133 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHH---------------HH--HHH
Confidence 3447777888877664 3333 334455667788988889999999731 111 00 112
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH----------HHHHHHhhhcccccc-eEEEEE
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1055 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~----------~~~l~e~l~~~~~~~-~~VlEv 1055 (1415)
...+...| ++++.+|++++.|+..|...|...+ -..|+..|.+....+ +.|.+
T Consensus 134 ~~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~- 197 (301)
T COG1162 134 LREYEDIG---------------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE- 197 (301)
T ss_pred HHHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc-
Confidence 22222222 6899999999999998888775432 134555555432221 22222
Q ss_pred EEEcCcceEEEEEEE
Q 000570 1056 KVIEGHGTTIDVVLV 1070 (1415)
Q Consensus 1056 k~~~G~Gtvi~~iV~ 1070 (1415)
..-.|..||....++
T Consensus 198 ~~~rGkHTTt~~~l~ 212 (301)
T COG1162 198 KLGRGRHTTTHVELF 212 (301)
T ss_pred cCCCCCCccceEEEE
Confidence 233566677766655
No 453
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.01 E-value=0.043 Score=65.93 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCceEEEEEeccc
Q 000570 928 QTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 928 QT~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.....++.|+..+.||||+||=.+-
T Consensus 168 AEervI~ELk~igKPFvillNs~~P 192 (492)
T PF09547_consen 168 AEERVIEELKEIGKPFVILLNSTKP 192 (492)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3456678899999999999998773
No 454
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=96.01 E-value=0.023 Score=53.79 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred cccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccC
Q 000570 1295 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1373 (1415)
Q Consensus 1295 vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~ 1373 (1415)
+|+.. +.|+.-+|..|.|+.|..+.+ +.+ ....|.||+.++..+.+|..|+-|+|.|.+.+. ..+..
T Consensus 9 v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~--------~~v~~ 76 (82)
T cd04089 9 KYKDM-GTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEE--------EDISP 76 (82)
T ss_pred EEEcC-CEEEEEEEeeeEEecCCEEEEeCCC---cEEEEEEEEECCEECCEECCCCEEEEEecCCCH--------HHCCC
Confidence 55533 456666999999999999987 554 257899999999999999999999999986542 24566
Q ss_pred CCeEE
Q 000570 1374 EDELV 1378 (1415)
Q Consensus 1374 ~d~l~ 1378 (1415)
|++|.
T Consensus 77 G~vl~ 81 (82)
T cd04089 77 GFVLC 81 (82)
T ss_pred CCEEe
Confidence 77664
No 455
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.93 E-value=0.016 Score=56.65 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=44.6
Q ss_pred ceeEEe-CCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlG-hvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+|+|+| ..|+||||+.-.|...-... |. . ...+..+. . ..+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~----~~--~--vl~~d~d~--------------~-~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARR----GK--R--VLLIDLDP--------------Q-YDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhC----CC--c--EEEEeCCC--------------C-CCEEEEeCcCCCCHH--H
Confidence 467777 67999999988875432111 10 0 11111110 0 358999999975443 2
Q ss_pred hhccCcccceEEEEeccC
Q 000570 906 SRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~ 923 (1415)
...+..||.+|++++...
T Consensus 56 ~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 56 RNALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHHCCEEEEeccCCH
Confidence 356677999999998765
No 456
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.11 Score=55.10 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=58.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc-cccCc-eeE-------eeceeEecccccceeeeecccccccCCCCEEEEeCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGG-ITQ-------QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 897 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~-geagG-ITq-------~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG 897 (1415)
.|.|.|.+|+|||||+-+|...--.. ...+| +|. .+|+..+...+-.. ...........-.+=+.+|+-+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~-~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEE-GILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCce-EEEEEcCCCCcccceEEeeHHH
Confidence 38999999999999999886321111 11122 221 12222222221100 0000000000001122333333
Q ss_pred Cc-chhhHHhhccCcccceEEEEec---cCCCChhHHHHHHHHHhcCCceEEEEEeccc
Q 000570 898 HE-SFTNLRSRGSGLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 898 He-~F~~lr~rgl~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.+ -+.....+++..+|++ +||= |.-..+.-.+.+..+...+.|+|+++.+-++
T Consensus 86 le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 86 LEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 32 2233344555556765 4553 3323344455666667778899999988766
No 457
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=95.77 E-value=0.035 Score=52.85 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=53.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcc-eeehhhhcCCCCCccceeeeeeeehhhhccccceeee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1126 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i-~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~ 1126 (1415)
|++.|+.+.+.+..|.++.++|++|+|++||.|.++...... ..+|..|+.+..... ....++ .+|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~-------~~v~~~--~aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKR-------VEVEEA--EAGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCe-------eECcEE--CCCCEEE
Confidence 468899999999999999999999999999999877653211 123333322211111 111222 2454556
Q ss_pred ccccccccCCCce
Q 000570 1127 AQGLEHAIAGTGL 1139 (1415)
Q Consensus 1127 ~~gL~~~~aG~~~ 1139 (1415)
+.||..+..|+.+
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 7788777777765
No 458
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.76 E-value=0.067 Score=66.73 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=7.7
Q ss_pred CCceEEEEEeccc
Q 000570 940 NTEFIVALNKVDR 952 (1415)
Q Consensus 940 ~vP~IVaINKiD~ 952 (1415)
.-|+++|.-|=|+
T Consensus 1191 kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1191 KPPILLVAGKDDM 1203 (1259)
T ss_pred CCCeEEEecCchH
Confidence 3466666666554
No 459
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=95.72 E-value=0.023 Score=54.46 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=56.0
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+ ...+.|+-.+|..|.|+.|..+++. .+. -....|.||+.++.++.+|..|+.|+|.|.+.+. ..+.
T Consensus 8 v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~--------~~v~ 78 (87)
T cd03697 8 VFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKR--------EDVE 78 (87)
T ss_pred EEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCH--------HHcC
Confidence 555 2334555559999999999999873 221 2468899999999999999999999999976431 1455
Q ss_pred CCCeEE
Q 000570 1373 IEDELV 1378 (1415)
Q Consensus 1373 ~~d~l~ 1378 (1415)
-|++|.
T Consensus 79 rG~vl~ 84 (87)
T cd03697 79 RGMVLA 84 (87)
T ss_pred CccEEe
Confidence 567664
No 460
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=95.68 E-value=0.03 Score=53.50 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=55.0
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceee
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKI 1125 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i 1125 (1415)
.||.+.|+.+.+.+..|.+..++|++|+|+.|+.+.... ....+|..|+.+...+.. ...+ +.+|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~-------~v~~--~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVV-------TADT--VTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeE-------ECcE--ECCCCEE
Confidence 467889999999999999999999999999999886543 111233344333222111 1122 2346677
Q ss_pred eccccccccCCCce
Q 000570 1126 TAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1126 ~~~gL~~~~aG~~~ 1139 (1415)
++.||..+..|+.+
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 77888888888765
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.68 E-value=0.023 Score=66.52 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
.-++.+|+|+|-.|+||||-+.+|.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 34677899999999999999999864
No 462
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=95.44 E-value=0.02 Score=52.65 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCC---cceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecccccc-ccCCC
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1137 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g---~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~-~~aG~ 1137 (1415)
|+++.++|++|+|+.||.|++++... +...+|+.|+.++...... ...+.+|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~---------~~~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEA---------VAGANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEE---------ETTEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEe---------CCceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999976221 2346666665444211111 11234567788888888 57776
Q ss_pred ce
Q 000570 1138 GL 1139 (1415)
Q Consensus 1138 ~~ 1139 (1415)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 463
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.43 E-value=0.021 Score=64.72 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHH------hcCCceEEEEEecc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 951 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk------~~~vP~IVaINKiD 951 (1415)
.+.+.||||||+... +....+..+|++|+.+....--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 357999999997753 3445677899999888765422223334433322 23678899999987
No 464
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.019 Score=66.59 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.+|+++|.-|+||||||+.|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 368999999999999999987543
No 465
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.42 E-value=0.06 Score=48.95 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=38.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhh
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~l 1096 (1415)
+.+.|..++...+.|+++.++|.+|+|++|+.+.+++........|+.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i 49 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSL 49 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEe
Confidence 3578889999999999999999999999999998876422333444444
No 466
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.35 E-value=0.028 Score=63.55 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~ 952 (1415)
..+.|||||+...+. ....+..+|.+|+|++....-...+...+.++...++++ .|++|+++.
T Consensus 109 yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 109 TDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred CCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 579999999865543 333456799999999886544445556666677777774 589999885
No 467
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.33 E-value=0.12 Score=64.59 Aligned_cols=47 Identities=40% Similarity=0.653 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000570 521 LARRKEAEERKKREEEERLRKEE--EERKRLEELERQAEEAKRRKKEKE 567 (1415)
Q Consensus 521 ~~~~~~eee~~~reeEE~~r~eE--Ee~~~~ee~er~~ee~~~~k~~~~ 567 (1415)
++.||+.||.+||++||.++.+. |-+|+.||++|.++++.+++-+.+
T Consensus 936 ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 936 ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33344444444444433333222 223344444444444444443333
No 468
>PHA02518 ParA-like protein; Provisional
Probab=95.27 E-value=0.038 Score=60.83 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCC---hhHHHHHHHHHhc--CCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~-IVaINKiD~ 952 (1415)
..+.||||||. +..+....+..+|.+|+++....--. .++...+..+... +.|. .|++|+.+.
T Consensus 77 ~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 77 YDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 46999999997 34455667788999999998764222 2333333333222 3554 466676553
No 469
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.24 E-value=0.046 Score=59.20 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
.+.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999999999999754
No 470
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.22 E-value=0.013 Score=69.38 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=42.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
-++..|+|+|.+++|||||+|+|....+ ..|...|+|..+--..+ ...|.|||.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-------------------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-------------------DKKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-------------------cCCceeccCCcee
Confidence 4566699999999999999999987665 45666777754432221 2359999999953
No 471
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.15 E-value=0.0077 Score=60.98 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=54.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
-+++|.|.+|+|||+|+..+............ ...+-.+..+... .......+.......... ......+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~ 78 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRSL 78 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHHH
Confidence 45899999999999999999864322111000 1111111111111 000000000001111111 1112223334
Q ss_pred HhhccCcccceEEEEeccCCC-ChhHHHHHHHHH-hcCCceEEEEEe
Q 000570 905 RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 949 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk-~~~vP~IVaINK 949 (1415)
....+......|||||-.+.+ .....+.|..+. ..++++|++.+-
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 444444455589999988777 656666665443 345678877654
No 472
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=95.14 E-value=0.073 Score=50.40 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=50.9
Q ss_pred EEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEE
Q 000570 1303 VLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1378 (1415)
Q Consensus 1303 IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~ 1378 (1415)
++.-+|..|.|+.|..+.+ +.+ ....|.||+.++.++..|..|+-|+|.|.+. .++..|++|-
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~----------~~i~~G~vl~ 80 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG---KTSRVKSIETFDGELDEAGAGESVTLTLEDE----------IDVSRGDVIV 80 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC---CeEEEEEEEECCcEeCEEcCCCEEEEEECCc----------cccCCCCEEe
Confidence 3455999999999999987 444 2578999999999999999999999999742 2466677663
No 473
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=94.96 E-value=0.058 Score=50.92 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=51.7
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
.+.|+.+.+.+..|.+..++|++|+|++||.|.+++... ..+|..|+.+.+.... ...+ +.+|..+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~-------~v~~--~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQE-------EVEE--AGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCce-------ECCE--eCCCCEEEEE
Confidence 467888888888999999999999999999998765331 1233333322222111 1122 2345566667
Q ss_pred ccccccCCCce
Q 000570 1129 GLEHAIAGTGL 1139 (1415)
Q Consensus 1129 gL~~~~aG~~~ 1139 (1415)
|+..+..|+.+
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 88877777765
No 474
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=94.85 E-value=0.065 Score=49.30 Aligned_cols=70 Identities=21% Similarity=0.094 Sum_probs=56.2
Q ss_pred CeEEEEEEeeceeecCCCEeecCC---ceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccc-ccCCCe
Q 000570 1301 PIVLGVDVVEGIAKVGTPICIPQR---DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH-FDIEDE 1376 (1415)
Q Consensus 1301 p~IaG~~V~~G~l~~g~~i~v~~~---~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~-f~~~d~ 1376 (1415)
+.|+.++|..|+|++|+.|.+... .-...++|.+|..++..+.++..|..||+.+...+. .+ +..||+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~--------~~~i~~Gdt 72 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGL--------NDAIRRGDT 72 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSG--------CSCSSTTEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCC--------CCCcCcCCE
Confidence 368999999999999999998221 223679999999999999999999999999876432 24 577887
Q ss_pred EE
Q 000570 1377 LV 1378 (1415)
Q Consensus 1377 l~ 1378 (1415)
|+
T Consensus 73 l~ 74 (74)
T PF03144_consen 73 LT 74 (74)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 475
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.83 E-value=0.034 Score=71.64 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=82.0
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeece-----------------------eEecccccc----
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA-----------------------TYFPAENIR---- 873 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga-----------------------~~~~~~~i~---- 873 (1415)
..+..|.|+|+|...+|||+.|+.|++-.+..-..+.+|...-. .+.+...++
T Consensus 25 ~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~ 104 (657)
T KOG0446|consen 25 SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR 104 (657)
T ss_pred CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence 44667889999999999999999999865543333333321100 000110000
Q ss_pred eee-------eec---ccc---cccCCCCEEEEeCCCCc-------------chhhHHhhccCcccceEEEEeccCCCCh
Q 000570 874 ERT-------REL---KAN---ATLKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLEP 927 (1415)
Q Consensus 874 ~~t-------~~v---~~~---~~~~~~~l~iIDTPGHe-------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~ 927 (1415)
..+ ..+ ... ..-..+.+++||+||.. ....|...++...+.+||.|.... ..-
T Consensus 105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~ 183 (657)
T KOG0446|consen 105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDI 183 (657)
T ss_pred hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhh
Confidence 000 000 000 01124579999999943 356778888999999999887755 445
Q ss_pred hHHHHHHHHHhc---CCceEEEEEecccc
Q 000570 928 QTIESLNLLKMR---NTEFIVALNKVDRL 953 (1415)
Q Consensus 928 QT~E~l~llk~~---~vP~IVaINKiD~~ 953 (1415)
.|.++|.+++.. +.-.|.|++|+|+.
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 566777777764 45788899999985
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.78 E-value=0.07 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t 848 (1415)
+++|+|.+|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 477
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.043 Score=66.35 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCC--CcchhhHHh----hccCcccceEEEEeccCCCC--hhHHHHHHHHHhcCCce---EEEEEeccccc
Q 000570 886 KVPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEF---IVALNKVDRLY 954 (1415)
Q Consensus 886 ~~~~l~iIDTPG--He~F~~lr~----rgl~~aDiaILVVDa~~Gv~--~QT~E~l~llk~~~vP~---IVaINKiD~~~ 954 (1415)
.+..+.||||.| |.+-.-|+. .-....|.+|+|--|--|-. .|....-..|.....|. -|+|+|+|.+.
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 345699999999 433332322 12455899999987765543 23333333444444443 36899999873
No 478
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.70 E-value=0.12 Score=59.44 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=38.7
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCCh---hHHHHHHHH-HhcCCceE-EEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP---QTIESLNLL-KMRNTEFI-VALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~---QT~E~l~ll-k~~~vP~I-VaINKiD~ 952 (1415)
+.+.||||||......+ ...+..||.+|+++....--.. .+...+..+ ...+++++ |++|+++.
T Consensus 116 yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGGF-AAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56999999986543322 2236779999999877532112 233333322 23456543 78999884
No 479
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.039 Score=65.24 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=23.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..-++-||.++|--|+||||.+-+|.+
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 3445777899999999999999988863
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=94.62 E-value=0.028 Score=67.75 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
-+++|+|++|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999999864
No 481
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.60 E-value=0.096 Score=61.15 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=63.1
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC--
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-- 898 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH-- 898 (1415)
...|.|.+.|+|.+|.|||+|+.+++...-......+. .+ .++++.+|.-
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-------~~---------------------PVv~vq~P~~p~ 108 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-------RI---------------------PVVYVQMPPEPD 108 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-------cc---------------------cEEEEecCCCCC
Confidence 45788889999999999999999998643221111110 01 1344444431
Q ss_pred ----------------------cchhhHHhhccCcccceEEEEeccCC----CChhHHHHHHHHHh----cCCceEEEEE
Q 000570 899 ----------------------ESFTNLRSRGSGLCDIAILVVDIMHG----LEPQTIESLNLLKM----RNTEFIVALN 948 (1415)
Q Consensus 899 ----------------------e~F~~lr~rgl~~aDiaILVVDa~~G----v~~QT~E~l~llk~----~~vP~IVaIN 948 (1415)
........+.+..+.+=+||||=.|. -..+-+++++.|+. +++|+|.|.+
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 11222334566678888999997664 34455566666654 5689998876
Q ss_pred e
Q 000570 949 K 949 (1415)
Q Consensus 949 K 949 (1415)
.
T Consensus 189 ~ 189 (302)
T PF05621_consen 189 R 189 (302)
T ss_pred H
Confidence 5
No 482
>PRK12736 elongation factor Tu; Reviewed
Probab=94.54 E-value=0.17 Score=61.89 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=58.3
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|. ...+.|+..+|..|+|+.|..|.+. .+. -...+|.||+.++.+|.++..|+-|||.|.+.+. ..+.
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i~ 288 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR--------DEVE 288 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcH--------HhCC
Confidence 665 4567889999999999999999873 222 2357999999999999999999999999976532 1355
Q ss_pred CCCeEE
Q 000570 1373 IEDELV 1378 (1415)
Q Consensus 1373 ~~d~l~ 1378 (1415)
.|++|.
T Consensus 289 ~G~vl~ 294 (394)
T PRK12736 289 RGQVLA 294 (394)
T ss_pred cceEEe
Confidence 566664
No 483
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.52 E-value=0.022 Score=66.46 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..+|+|+|++|+||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 484
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.49 E-value=0.064 Score=59.77 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCcch------hhHHhhccCcccc---eEEEEeccCCCChhHHH-----HHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESF------TNLRSRGSGLCDI---AILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F------~~lr~rgl~~aDi---aILVVDa~~Gv~~QT~E-----~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.++.|+|+||+..| .+...+.+...|+ +|-+||+.--..|...- ++.-+.....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 46999999995433 1112223333444 34445543322333322 2333445678999999999986
Q ss_pred c
Q 000570 954 Y 954 (1415)
Q Consensus 954 ~ 954 (1415)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
No 485
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.46 E-value=0.024 Score=66.73 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ 851 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~ 851 (1415)
..+-|+++|.+++|||+++|.||...|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccc
Confidence 3445999999999999999999988775
No 486
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.28 E-value=0.034 Score=57.28 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+|+|+|++|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 487
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=94.11 E-value=0.18 Score=50.42 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.6
Q ss_pred cccccceEEEEEEEEc--------CcceEEEEEEEeeEEccCCEEEEe
Q 000570 1044 FRNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~--------G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
+..++.+.|..+|.+. +.|.|+.+.|.+|+|++||.|-+.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 3457889999999998 999999999999999999999665
No 488
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=94.06 E-value=0.13 Score=48.79 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=50.0
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
.+.|+.+.+.+..|....++|++|+|+.||.|.++.... ..+|..|+.++.... ....+ +.+|-.+++.
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~-------~~v~~--~~aGdI~~i~ 70 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY-------QEIPS--LSAGNIGVIT 70 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc-------eECCe--eCCCCEEEEE
Confidence 467888888888999999999999999999987654321 122323322211111 11122 2345556667
Q ss_pred ccccccCCCce
Q 000570 1129 GLEHAIAGTGL 1139 (1415)
Q Consensus 1129 gL~~~~aG~~~ 1139 (1415)
|++.+..|+.+
T Consensus 71 gl~~~~~Gdtl 81 (83)
T cd04092 71 GLKQTRTGDTL 81 (83)
T ss_pred CCCCcccCCEE
Confidence 88777777765
No 489
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.05 E-value=0.13 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
..+++|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999997643
No 490
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.69 E-value=0.041 Score=59.38 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=22.6
Q ss_pred CcccceEEEEec---cCCCChhHHHHHHHHHhcCCceEEEEEec
Q 000570 910 GLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 910 ~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKi 950 (1415)
..+| |+|||= |.-..+.-.+.+..+...++|+|.+|.+-
T Consensus 94 ~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3445 778884 33334555666666666789999999887
No 491
>PLN03126 Elongation factor Tu; Provisional
Probab=93.69 E-value=0.14 Score=64.09 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=59.7
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1294 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1294 ~vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
.+|+ ...+.|+.-.|..|.|++|..|.+. .+. -...+|.||+.++.++..|..|+.|||.|.+.+. ..+
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~--------~di 366 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK--------ADI 366 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcH--------HHc
Confidence 3676 3457788889999999999999884 332 2458899999999999999999999999986532 245
Q ss_pred cCCCeEEE
Q 000570 1372 DIEDELVS 1379 (1415)
Q Consensus 1372 ~~~d~l~s 1379 (1415)
..|++|..
T Consensus 367 ~rG~VL~~ 374 (478)
T PLN03126 367 QRGMVLAK 374 (478)
T ss_pred CCccEEec
Confidence 55666644
No 492
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=93.68 E-value=0.085 Score=59.42 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC---ChhHHHHHHHHH---hcCCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL---EPQTIESLNLLK---MRNTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv---~~QT~E~l~llk---~~~vP~IVaINKiD~ 952 (1415)
+.+.||||+|..+..+. ..++.+|++|+=+-.+.-- ..+|+.++..+. .+.+|+-|++|++.-
T Consensus 84 ~d~VlvDleG~as~~~~--~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 84 FDFVLVDLEGGASELND--YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCEEEEeCCCCCchhHH--HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 46899999997665533 3345688776544332211 234555554332 346899999999874
No 493
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.63 E-value=0.12 Score=60.11 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
++|+|+|..|+|||||+.+|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.58 E-value=0.059 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
++.+|.|+.|+|||||||+|..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 495
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.45 E-value=0.15 Score=57.06 Aligned_cols=66 Identities=17% Similarity=-0.059 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCcchhhHH-hhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-SRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~ 953 (1415)
+.+.|||||.......+. ...+ ..+|.+|||+........++...+..++..+++ .-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 679999999754333222 2222 246899999998877778889999999999876 46899998753
No 496
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=93.43 E-value=0.18 Score=62.34 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=56.3
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecC
Q 000570 1285 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358 (1415)
Q Consensus 1285 p~~l~i~~~~vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~ 1358 (1415)
|..+.|. .+|+ ...+.|+.-+|..|.|+.|..|.+ +.+ ...+|.||+.++.++.+|..|+-|||.|.+.
T Consensus 227 p~r~~i~--~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i 297 (426)
T TIGR00483 227 PLRIPIQ--DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGV 297 (426)
T ss_pred CcEEEEE--EEEecCCCeEEEEEEEccceeecCCEEEECCCC---cEEEEEEEEECCcccCEEcCCCEEEEEECCC
Confidence 4444444 3676 455778888999999999999998 555 3579999999999999999999999999764
No 497
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.40 E-value=0.24 Score=55.18 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcchhhHHh-hccCcccceEEEEeccCCCC---hhHHHHHHHHHhc-CCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~-rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~-~vP~-IVaINKiD~ 952 (1415)
.-+.||||||+.....+.. ..+..||.+|+|+....--. ......+..++.. ++++ .|++|+++.
T Consensus 117 yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 117 LDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 5699999998764333211 11247999999997643111 2223334444332 4443 489999885
No 498
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=93.40 E-value=0.45 Score=45.41 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccc---eee
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG---IKI 1125 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~g---v~i 1125 (1415)
.+.|..+|.+.+.|+++.++|.+|+|++|+.|.+++.+..+++ ..+.+.+.+...+..+.. |.|
T Consensus 2 ~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~-------------g~i~sl~~~~~~v~~a~~G~ecgi 68 (84)
T cd03692 2 EAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYE-------------GKISSLKRFKDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEE-------------EEEEEEEEcCcccCEECCCCEEEE
Q ss_pred eccccccccCCCceEE
Q 000570 1126 TAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1126 ~~~gL~~~~aG~~~~v 1141 (1415)
.+.+++....|+.+.+
T Consensus 69 ~l~~~~d~~~Gdvi~~ 84 (84)
T cd03692 69 TLENFNDIKVGDIIEA 84 (84)
T ss_pred EEeCcccCCCCCEEEC
No 499
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.35 E-value=0.16 Score=62.60 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeecee-EecccccceeeeecccccccCCCC------EEEEeCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-YFPAENIRERTRELKANATLKVPG------LLVIDTP 896 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~-~~~~~~i~~~t~~v~~~~~~~~~~------l~iIDTP 896 (1415)
++.+|+|+|.+|+||||+...| ...+|.. .+..+.++..-..+.....+..-+ +..+++|
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~L-------------A~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~ 320 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASAL-------------AYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPP 320 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHH-------------HHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCc
Q ss_pred CCc-----chhhHHhhccCcccce----------------EEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccC
Q 000570 897 GHE-----SFTNLRSRGSGLCDIA----------------ILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG 955 (1415)
Q Consensus 897 GHe-----~F~~lr~rgl~~aDia----------------ILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~ 955 (1415)
|+. ........+..+|..+ -+||+..| +.|..+.........-+||.|.++.-+..
T Consensus 321 ~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVH-l~P~~i~~~~~~~~~~i~flv~isdeeeH-- 397 (475)
T PRK12337 321 GEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVH-LVPGYLRHPYQAGALVVPMLVTLPDEALH-- 397 (475)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCC-CCHHHHHHHHhcCCceEEEEEEECCHHHH--
Q ss_pred CccCCChhHHHHHHhhhHHHHHHHHHH-------------------HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCC
Q 000570 956 WKTCRNAPIVKAIKQQNTDVQNEFNMR-------------------LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 1016 (1415)
Q Consensus 956 w~~~~~a~~~~~l~~q~~~v~~ef~~~-------------------l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvS 1016 (1415)
+..|..+ +..|.+.|....-. ..+|+|
T Consensus 398 --------------------~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~~-----------~~ipvI--- 443 (475)
T PRK12337 398 --------------------RRRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLARQ-----------EGVPVL--- 443 (475)
T ss_pred --------------------HHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHHH-----------cCCCee---
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000570 1017 AISGEGIPDLLLLLVQWTQKTMVEKLTF 1044 (1415)
Q Consensus 1017 A~tGeGI~dLl~~L~~l~~~~l~e~l~~ 1044 (1415)
.+.+|+.-++.++..+-..+...+.+
T Consensus 444 --~n~nid~tv~~~l~~i~~~~~~~~~~ 469 (475)
T PRK12337 444 --PGEDLDESIDKALEVVLRRVMAALTP 469 (475)
T ss_pred --cCccHHHHHHHHHHHHHHHHHHhcCH
No 500
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.35 E-value=0.095 Score=56.07 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEe----cccccceeeeecccccccCCCCE-EEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF----PAENIRERTRELKANATLKVPGL-LVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~----~~~~i~~~t~~v~~~~~~~~~~l-~iIDTPGHe~ 900 (1415)
++|+|+|+.|+|||||+.+|.......|..-|+-.+.+.... ..+..+.+........-.....+ ++..++....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa~~v~~~~~~~~~~~~~~~~~~~ 81 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPRRWALIRELRDEPE 81 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCCCEEEEecCCeEEEEEEcCCCcc
Q ss_pred hhhHHhhccCcccceEE
Q 000570 901 FTNLRSRGSGLCDIAIL 917 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaIL 917 (1415)
........+..+|++|+
T Consensus 82 ~~~~~~~~~~~~D~vlv 98 (159)
T cd03116 82 PDLLLLLRLLDVDLVLV 98 (159)
T ss_pred ccHHHHhhCCCCCEEEE
Done!