Query 000570
Match_columns 1415
No_of_seqs 652 out of 4517
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:03:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000570.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_342-346//hhsearch_pdb/000570hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 1.0 1 1 873.0 47.3 577 822-1414 2-583 (594)
2 1zo1_I IF2, translation initia 1.0 1 1 687.1 13.6 473 823-1384 2-497 (501)
3 3izy_P Translation initiation 1.0 1 1 658.7 14.2 471 823-1380 2-536 (537)
4 3mca_A HBS1, elongation factor 1.0 1 1 278.9 17.0 254 826-1145 178-489 (592)
5 1wb1_A Translation elongation 1.0 1 1 275.6 14.9 255 821-1141 15-280 (482)
6 3vqt_A RF-3, peptide chain rel 1.0 1 1 274.2 19.3 281 819-1140 27-397 (548)
7 3j25_A Tetracycline resistance 1.0 1 1 274.0 3.9 253 822-1086 1-286 (638)
8 3avx_A Elongation factor TS, e 1.0 1 1 273.6 19.4 257 826-1145 297-581 (1289)
9 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 273.4 25.1 261 825-1146 17-328 (439)
10 4fn5_A EF-G 1, elongation fact 1.0 1 1 271.8 16.2 291 821-1140 11-401 (709)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=873.05 Aligned_cols=577 Identities=37% Similarity=0.669 Sum_probs=522.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCC--CCCCCCCCEEEEECCCCC
Q ss_conf 358980668717999878999999839533555576037520367213331000000013--445677979999399985
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~--~~~~~~~~l~iIDTPGHe 899 (1415)
++|+|+|+|+||+|||||||+++|+++.+...+.+|||++++++++++..+...+..+.. ...+..+.++|||||||+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCH
T ss_conf 98881999999999739999999966667656678600213719986201121024323553222554888999897937
Q ss_pred CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 11457750157666307987125799765799999997219955999982366458755888028999986449999999
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
+|+.++.++++.||++|||||+++|+++||.++|.++...++|+|||+||||+...|....+.++...+..+..+++..|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999997775399999999799885476799999999749809999625666433333347746899987678888877
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCEEEEEEEE
Q ss_conf 898999999999807831232013588962149947887789900489999999999999853--114655027999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 1057 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l--~~~~~~~~~VlEv~~ 1057 (1415)
...+..+...|.+.++..+.|+....++..++++|+||++|.||.+|+.+|..+++.++...+ .+..++++.|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEE
T ss_conf 77899999999875861678998875167622898764678882557899975340000234124557885048999998
Q ss_pred ECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCE-EEEEEEEHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf 8175039999999328726999999426896101012202899883101-100221000011124505601565323579
Q 000570 1058 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIAG 1136 (1415)
Q Consensus 1058 ~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~r-vk~~~~~~~ev~aa~gv~i~~~gL~~~~aG 1136 (1415)
++|.|++++++|.+|+|+.||.|++++.+++..++|++|++|.|+.+++ ..+.+...+++.+++|+.+++.+|..+.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred ECCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCCCCC
T ss_conf 07957999999962879619999988889845689869980266213331357856813885799809997466788999
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHH
Q ss_conf 95299299861899999999999998753201488449951885669999997324981233588550755240387887
Q 000570 1137 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1216 (1415)
Q Consensus 1137 ~~~~vv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAi~~~L~~~~~~i~v~~~~iG~vt~~DV~~A~ 1216 (1415)
+.+.++.++ +.++++++.++..+ .+.....||+|||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 322 d~l~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~--~~~~v~~~~vg~i~~~dv~~a~ 394 (594)
T 1g7s_A 322 SPLRVVTDP---EKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAG 394 (594)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHH
T ss_pred CEEEECCCH---HHHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHH--CCCCEEECCCCCCCHHHHHHHH
T ss_conf 988815998---99999999988743--3544446479983787889999999984--7875795146888788999987
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHCHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCC
Q ss_conf 53100257849999358999779999998098298725133029999999823257777764052110305665156201
Q 000570 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296 (1415)
Q Consensus 1217 ~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf 1296 (1415)
++++++|.||+||||||+++++|+.+|++.||+|++|+|||||+|+|++||++++++.+++..+.+++||.++|+|++||
T Consensus 395 ~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f 474 (594)
T 1g7s_A 395 IALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVF 474 (594)
T ss_dssp HHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEEEEEECCEEE
T ss_conf 43113767878999578689889999997498699877799999999998653045155544324420289999311389
Q ss_pred CCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 68998599899862235229987623991433478821002365523333798189998159970001111421367984
Q 000570 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1376 (1415)
Q Consensus 1297 ~~~~p~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~f~~~d~ 1376 (1415)
+.++|+||||+|++|+|++|+++|++++ +|.|+|.||+++|++|++|++|+||||+|++| ++||||.++|+
T Consensus 475 ~~~~~~i~g~~v~~G~~~~~~~~~~~~~--~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~-------~~~~~~~~~d~ 545 (594)
T 1g7s_A 475 RQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAIKDA-------VYGKTIHEGDT 545 (594)
T ss_dssp ECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEEETC-------CBTTTBCTTCE
T ss_pred CCCCCEEEEEEEECCEEECCCEEEECCC--CEEEEEEHHCCCCCCCCCCCCCCEEEEEEECC-------CCCCCCCCCCE
T ss_conf 2799869999996188954985996699--37998851321584225127897899998376-------55788987989
Q ss_pred EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99726444599999996301899899999997421179
Q 000570 1377 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414 (1415)
Q Consensus 1377 l~s~i~r~~i~~Lk~~~~~~ls~~~~~~~~~lk~~~~i 1414 (1415)
|+++|+|.++++|+++||++||.++|++|++||++|.-
T Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (594)
T 1g7s_A 546 LYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKRK 583 (594)
T ss_dssp EEECCCHHHHHTTTSCC---CCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999858899999998766899999999999998563
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=687.12 Aligned_cols=473 Identities=28% Similarity=0.426 Sum_probs=385.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 58980668717999878999999839533555576037520367213331000000013445677979999399985114
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.|+|+|+|+||+|||||||+++|+++.+..++.+|||++++++.+.+.. ..++|||||||++|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC----------------EEEEEEECCCCHHHH
T ss_conf 9870999999999988999999976887535689703767799999899----------------899999899857889
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57750157666307987125799765799999997219955999982366458755888028999986449999999898
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
.++.++++.+|++|||||+++|+++||.++|.++...++|+||++||||+.. |...
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~----------------------- 121 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPD----------------------- 121 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCC-----------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHH-----------------------
T ss_conf 9999887538899999425667627789999988862964999997326543-5777-----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 99999999980783123201358896214994788778990048999999999999985311465502799999981750
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l~~~~~~~~~VlEv~~~~G~G 1062 (1415)
.+...+...++.. ..|++.++++++||++|.||.+|+.+|..... .+.....+..+++++|++++.+.|.|
T Consensus 122 --~v~~~l~~~~~~~------~~~~~~~~~v~vSAktG~gI~eLle~I~~~~~-~~~~~~~~~~~~~~~V~e~~~d~g~G 192 (501)
T 1zo1_I 122 --RVKNELSQYGILP------EEWGGESQFVHVSAKAGTGIDELLDAILLQAE-VLELKAVRKGMASGAVIESFLDKGRG 192 (501)
T ss_dssp --CTTCCCCCCCCCT------TCCSSSCEEEECCTTTCTTCTTHHHHTTTTCC-CSTTTSCCCSBCEEEEEEEEECSSSS
T ss_pred --HHHHHHHHHHHHH------HHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf --8889998721028------87278760799864303574035555565554-32101223565543159999727928
Q ss_pred EEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCCCCEEEECCCCCC-CCCCCCEEE
Q ss_conf 3999999932872699999942689610101220289988310110022100001112450560156532-357995299
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGLYV 1141 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa~gv~i~~~gL~~-~~aG~~~~v 1141 (1415)
++++++|.+|+|++||.|+++ +..++||+|++++... + +++. +|..+.+.||.. +.+|+.+++
T Consensus 193 ~v~~~~V~~Gtlk~Gd~v~~g----~~~~kVr~i~~~~g~~---v-------~~a~--~g~~V~i~gl~~~~~~Gd~~~~ 256 (501)
T 1zo1_I 193 PVATVLVREGTLHKGDIVLCG----FEYGRVRAMRNELGQE---V-------LEAG--PSIPVEILGLSGVPAAGDEVTV 256 (501)
T ss_dssp EEEEEEEEESBCCTTCEEEEE----BSSCEEEEECCTTTTS---E-------EEEC--CSSCSSSEEECSCCCTTEEEEE
T ss_pred EEEEEEEEEEEEECCCEEEEC----CCEEEEEEEEECCCCC---C-------CEEC--CCCCEEEECCCCCCCCCCEEEE
T ss_conf 999999985699059889976----5133999998048986---7-------5864--5772799678798989998994
Q ss_pred ECCCCCHHH-------------HHHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHC---CCCCEEEEEEE
Q ss_conf 299861899-------------99999999999875320---148844995188566999999732---49812335885
Q 000570 1142 VGPDDDLED-------------VKEEAMEDMKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGI 1202 (1415)
Q Consensus 1142 v~~~~~~~~-------------~~~~~~~~~~~~~~~i~---~~~~gv~vkadt~GSlEAi~~~L~---~~~~~i~v~~~ 1202 (1415)
+.++..++. +.......+..+++.+. ....|++|||||+||||||+++|. +++++++|+++
T Consensus 257 ~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~ 336 (501)
T 1zo1_I 257 VRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGS 336 (501)
T ss_dssp ECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 28878988999999999999987665330699998666316874577999978867899999999861645630479981
Q ss_pred EECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHCHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 507552403878875310025784999935899977999999809829872513302999999982325777776-4052
Q 000570 1203 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADE 1281 (1415)
Q Consensus 1203 ~iG~vt~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~~~~~~~~~~~e-~~~~ 1281 (1415)
+||+||++||++|++ +||+||||||++++.|+.+|++.||+|++|+|||||+|+|++||++++++...+ ..+.
T Consensus 337 ~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~ 410 (501)
T 1zo1_I 337 GVGGITETDATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410 (501)
T ss_dssp SSSSSHHHHSTTTCG------GGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCC
T ss_pred CCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 368889899998773------18879995588997899999974987999077999999999998764184256420058
Q ss_pred EEECEEEEECCCCCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 11030566515620168-99859989986223522998762-39914334788210023655233337981899981599
Q 000570 1282 AVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSN 1359 (1415)
Q Consensus 1282 av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n 1359 (1415)
|. |+. +|+. +.|+||||+|++|+|++|+++|+ |++.+||.|+|.||+|+|++|++|++|+||||+|++||
T Consensus 411 a~------v~~--~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~~ 482 (501)
T 1zo1_I 411 AE------VRD--VFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN 482 (501)
T ss_dssp EE------EEE--CSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCCT
T ss_pred EE------EEE--EEECCCCCEEEEEEEEECEEECCCEEEEEECCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCC
T ss_conf 99------999--9965999889999997088963985999708808998788113436862169889988999975857
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCHH
Q ss_conf 7000111142136798499726444
Q 000570 1360 SEEQQKMFGRHFDIEDELVSHISRK 1384 (1415)
Q Consensus 1360 ~~~~~~~~gr~f~~~d~l~s~i~r~ 1384 (1415)
+|.+||+|+++....
T Consensus 483 ----------~~~~gd~~~~~~~~~ 497 (501)
T 1zo1_I 483 ----------DVRTGDVIEVFEIIE 497 (501)
T ss_dssp ----------TCCTTCEEEECCCTT
T ss_pred ----------CCCCCCEEEEEEEEE
T ss_conf ----------799898999999999
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=658.70 Aligned_cols=471 Identities=27% Similarity=0.391 Sum_probs=377.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 58980668717999878999999839533555576037520367213331000000013445677979999399985114
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.|+|+|+||||+|||||||+++|+++.+...+.+|+|++++++.+.+.. ...++|||||||+.|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC---------------CCEEEEEECCCHHHHH
T ss_conf 9899999999989998999999958876620179666887699999489---------------9789999898848999
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57750157666307987125799765799999997219955999982366458755888028999986449999999898
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
.++.++++.+|++|||||+++|+++||.++|.++...++|+||++||+|++.. .. .
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~-~~---~-------------------- 122 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA-DP---E-------------------- 122 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTT-SC---C--------------------
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CH---H--------------------
T ss_conf 99999871198899999799986477899999998759968999943432334-25---8--------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 99999999980783123201358896214994788778990048999999999999985311465502799999981750
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l~~~~~~~~~VlEv~~~~G~G 1062 (1415)
.+...+...++... .|+..++++++||++|.||.+|+.+|..+++. +.....+..+++++|++++.++|.|
T Consensus 123 --~v~~~l~~~~~~~e------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G 193 (537)
T 3izy_P 123 --KVKKELLAYDVVCE------DYGGDVQAVHVSALTGENMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG 193 (537)
T ss_dssp --SSSSHHHHTTSCCC------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC
T ss_pred --HHHHHHHHHHHHHH------HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf --89999986301377------61898339999788799950478999986530-3555788788611689999848975
Q ss_pred EEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHC-CCCCEEEECCCCCC-CCCCCCEE
Q ss_conf 39999999328726999999426896101012202899883101100221000011-12450560156532-35799529
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGLY 1140 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~-aa~gv~i~~~gL~~-~~aG~~~~ 1140 (1415)
++++++|.+|+|++||.++ + |...++||+|+.++. ..+. +.+|..+.+.||.. +.+|+.|.
T Consensus 194 ~V~~g~V~~G~l~~Gd~v~-~---g~~~~kVr~i~~~~g-------------~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 194 PVTTAIIQRGTLRKGSILV-A---GKSWAKVRLMFDENG-------------RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CCEEEEEEEECCSSEEEEC-C---SSCCEEEEEEEECCC-------------CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEEECCEEECCCEEE-E---CCCEEEEEEEECCCC-------------CCCCEECCCCEEEEECCCCCCCCCCEEE
T ss_conf 3999999668897699997-3---895499999996899-------------7976986999799978878999999999
Q ss_pred EECCCCCHHHH--------HH-----------------------HHH--------HHHHHHHH--------H------HH
Q ss_conf 92998618999--------99-----------------------999--------99999875--------3------20
Q 000570 1141 VVGPDDDLEDV--------KE-----------------------EAM--------EDMKSVMS--------R------ID 1167 (1415)
Q Consensus 1141 vv~~~~~~~~~--------~~-----------------------~~~--------~~~~~~~~--------~------i~ 1167 (1415)
++.++..++.+ .+ ... ..+...+. + .+
T Consensus 257 ~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
T 3izy_P 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERD 336 (537)
T ss_dssp SCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 56875899999999999999876532133344444555677787665410110355556666532211101101210256
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHCC----CCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 1488449951885669999997324----981233588550755240387887531002578499993589997799999
Q 000570 1168 KSGEGVCVQASTLGSLEALLEFLKS----DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELA 1243 (1415)
Q Consensus 1168 ~~~~gv~vkadt~GSlEAi~~~L~~----~~~~i~v~~~~iG~vt~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A 1243 (1415)
....++||||||+||||||.++|.. ++++++|++++||+||++||++|++ ++|+||||||++++.|+.+|
T Consensus 337 ~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a 410 (537)
T 3izy_P 337 SNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLA 410 (537)
T ss_dssp CCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHH------HSCCEEESSCCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHH
T ss_conf 642559999677360999999998568887078999983078898889999874------48869995578897899999
Q ss_pred HHCCCEEEECCHHHCHHHHHHHHHHHHHHHHHHHH-CCCEEECEEEEECCCCCCC--CCCCEEEEEEEEECEEECCCCEE
Q ss_conf 98098298725133029999999823257777764-0521103056651562016--89985998998622352299876
Q 000570 1244 EELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPIC 1320 (1415)
Q Consensus 1244 ~~~gV~I~~~~IIY~Lid~~~~~~~~~~~~~~~e~-~~~av~p~~l~i~~~~vf~--~~~p~IaG~~V~~G~lk~g~~i~ 1320 (1415)
+..||+|++|+|||||+|+++++|.+++++...+. .|.| .|++.|.|+ ++.|.||||+|++|+|++|++++
T Consensus 411 ~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a------~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r 484 (537)
T 3izy_P 411 AKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEA------SILATFSITEGKKKVPVAGCRVQKGQIEKQKKFK 484 (537)
T ss_dssp HHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEE------EEEEEESSCSSSCCSCEEEEEECSSEEESSSEEE
T ss_pred HHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEE------EECCCEEECCCCCCCCEEEEEEEECEEEECCEEE
T ss_conf 8769869992749999999999997426870378888999------9958189888775671789999727286088079
Q ss_pred E-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 2-399143347882100236552333379818999815-99700011114213679849972
Q 000570 1321 I-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGRHFDIEDELVSH 1380 (1415)
Q Consensus 1321 v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~-~n~~~~~~~~gr~f~~~d~l~s~ 1380 (1415)
| |++.+||.|.|.||+|++++|++|++|+||||.|++ || +|.+||+|.++
T Consensus 485 ~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~----------~~~~gd~ie~~ 536 (537)
T 3izy_P 485 LIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKI----------EFKVGDAIICY 536 (537)
T ss_dssp EESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCS----------SCSCCCEEEEE
T ss_pred EECCCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCCC----------CCCCCCEEEEE
T ss_conf 96499899998883034258254357689889999717645----------79989789996
No 4
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=278.89 Aligned_cols=254 Identities=25% Similarity=0.304 Sum_probs=180.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC-------------------------------CCCCCCEEEEECEEEECCCCCCE
Q ss_conf 80668717999878999999839533-------------------------------55557603752036721333100
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~p~e~i~~ 874 (1415)
+.|+|+||+|+|||||+++|++.... ....+|||++++...+.+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~----- 252 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES----- 252 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEEE-----
T ss_conf 189998589998899999999871885467889887767651875201344422534441388169753899971-----
Q ss_pred EEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 000001344567797999939998511457750157666307987125799-------76579999999721995-5999
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 946 (1415)
Q Consensus 875 ~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~vP-~IVv 946 (1415)
....|+|||||||.+|..++.++++.+|++|||||+.+|. ++||.+++.++...++| +|||
T Consensus 253 -----------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvv 321 (592)
T 3mca_A 253 -----------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVS 321 (592)
T ss_dssp -----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEE
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf -----------994899998998288899999888658999999978877522244655579999999998399849999
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH-
Q ss_conf 98236645875588802899998644999999989899999999-9807831232013588962149947887789900-
Q 000570 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP- 1024 (1415)
Q Consensus 947 iNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~- 1024 (1415)
+||||++. |. . ..+......+...+ ...|+.. ..+++||+||++|.||.
T Consensus 322 iNKiDl~~-~~----~--------------~~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 322 VNKLDLMS-WS----E--------------DRFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp EECGGGGT-TC----H--------------HHHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSSCS
T ss_pred EECCCCCC-CC----H--------------HHHHHHHHHHHHHHHHHHCCCC----------CCEEEEEEECCCCCCCCC
T ss_conf 96346655-43----7--------------8999999999999987508886----------624899975455754334
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEE
Q ss_conf -------------4899999999999998531146550279999998175039999999328726999999426896101
Q 000570 1025 -------------DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVT 1091 (1415)
Q Consensus 1025 -------------eLl~~l~~l~~~~l~e~l~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~ 1091 (1415)
.|+..|..+.. .......++++.|.+++.+ |.|+++.|+|.+|+|++||.|++++.+
T Consensus 373 ~~~~~~~~w~~g~~Lle~l~~~~p----p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~----- 442 (592)
T 3mca_A 373 KDSSDLYKWYKGPTLLSALDQLVP----PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ----- 442 (592)
T ss_dssp CCCCGGGGTCCSCCHHHHHHTSCC----CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT-----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCC-----
T ss_conf 543221223540789999975206----5555555600124689955-982999999941367369889991699-----
Q ss_pred EHHHHCCCCCCCCCEEEEEEEEHHHHC-CC---CCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 012202899883101100221000011-12---4505601565323579952992998
Q 000570 1092 TIRALLTPHPMKELRVKGTYLHHKQIK-AA---QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1092 ~Ir~ll~p~p~~e~rvk~~~~~~~ev~-aa---~gv~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
...+|+++++|+..+. .+ ..+.+.+.|+.......+.+++.+.
T Consensus 443 -----------~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 443 -----------EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp -----------EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred -----------CEEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCC
T ss_conf -----------46899999975845763406898899997253002331378852699
No 5
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=275.62 Aligned_cols=255 Identities=23% Similarity=0.364 Sum_probs=189.3
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC-------CCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEE
Q ss_conf 13589806687179998789999998395-------33555576037520367213331000000013445677979999
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 893 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~-------v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iI 893 (1415)
..++++.|+|+||+|+|||||+++|++.. ......+|||++++..++.+.. ..++||
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~~i~ii 78 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------YRITLV 78 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------EEEEEC
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECC----------------EEEEEE
T ss_conf 3389889999999998299999999788764112555223357617830569999899----------------799999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 39998511457750157666307987125799765799999997219955999982366458755888028999986449
Q 000570 894 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 894 DTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
|||||++|..++.++++.+|++|||||+.+|+++||.+++.++...++|+||++||+|+.. ..
T Consensus 79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~~---------- 141 (482)
T 1wb1_A 79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TE---------- 141 (482)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HH----------
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CH----------
T ss_conf 8988699999999888449999999956878657789999999984998899997877322-------01----------
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999989899999999980-78312320135889621499478877899004899999999999998531146550279
Q 000570 974 DVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1052 (1415)
Q Consensus 974 ~i~~ef~~~i~~Ii~~L~e~-gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l~~~~~~~~~V 1052 (1415)
.+......+...+... ++. .++++|+||++|+||.+|+.+|..++..+.. ......++++.|
T Consensus 142 ----~~~~~~~~l~~~l~~~~~~~------------~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~-~~~~~~~~~~~v 204 (482)
T 1wb1_A 142 ----EIKRTEMIMKSILQSTHNLK------------NSSIIPISAKTGFGVDELKNLIITTLNNAEI-IRNTESYFKMPL 204 (482)
T ss_dssp ----HHHHHHHHHHHHHHHSSSGG------------GCCEEECCTTTCTTHHHHHHHHHHHHHHSCC-CCCSSSCCBCBC
T ss_pred ----HHHHHHHHHHHHHHHHCCCC------------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCC
T ss_conf ----58999999999986413555------------6319998776798879999999876127644-565212555311
Q ss_pred EEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHC---CCCCEEEECCC
Q ss_conf 999998175039999999328726999999426896101012202899883101100221000011---12450560156
Q 000570 1053 LEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQG 1129 (1415)
Q Consensus 1053 lEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~---aa~gv~i~~~g 1129 (1415)
..++.+.|.|+++.+.|.+|+|++||.+++++.+ .. .+|+++++++..+. +++.+.+.+.+
T Consensus 205 ~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~--~~--------------~~V~~i~~~~~~v~~a~~G~~v~~~l~~ 268 (482)
T 1wb1_A 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN--MS--------------TKVRSIQYFKESVMEAKAGDRVGMAIQG 268 (482)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC--CC--------------EEECCBCGGGSCBCCCCSSCCCCEECSS
T ss_pred EEEEEECCCCEEEEEEEEEEEEEECCEEEECCCC--CE--------------EEEEEEEECCEEEEEECCCCEEEEEECC
T ss_conf 1589964883499999987699609999999999--68--------------9992999999085072599989999669
Q ss_pred CCCCCCCCCEEE
Q ss_conf 532357995299
Q 000570 1130 LEHAIAGTGLYV 1141 (1415)
Q Consensus 1130 L~~~~aG~~~~v 1141 (1415)
++......+.++
T Consensus 269 ~~~~~i~~Gdvl 280 (482)
T 1wb1_A 269 VDAKQIYRGXIL 280 (482)
T ss_dssp CCSSCCCSSCBC
T ss_pred CCHHHCCCCCEE
T ss_conf 978631565267
No 6
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=274.16 Aligned_cols=281 Identities=20% Similarity=0.256 Sum_probs=190.2
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCC----------------------CCCCCCEEEEECEEEECCCCCCEEE
Q ss_conf 101358980668717999878999999839533----------------------5555760375203672133310000
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------------EGEAGGITQQIGATYFPAENIRERT 876 (1415)
Q Consensus 819 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------------~geagGITq~iga~~~p~e~i~~~t 876 (1415)
....+|| |+|+||+|||||||+++|+..... ....+|||+...+..+.|
T Consensus 27 e~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~------- 97 (548)
T 3vqt_A 27 EAARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY------- 97 (548)
T ss_dssp HHHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-------
T ss_pred CCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEEEE-------
T ss_conf 1136666--9999089988999999999866863215416437665543367728898779747504699987-------
Q ss_pred EECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 00013445677979999399985114577501576663079871257997657999999972199559999823664587
Q 000570 877 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 956 (1415)
Q Consensus 877 ~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w 956 (1415)
+...|+|||||||.+|+..+.|+++.||+||||||+..|+++||...|+++..+++|.|++|||||+.
T Consensus 98 ---------~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~--- 165 (548)
T 3vqt_A 98 ---------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE--- 165 (548)
T ss_dssp ---------TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC---
T ss_pred ---------CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---
T ss_conf ---------99899999698827778999999975680599830588730441889999987187369887346601---
Q ss_pred CCCCCHHHHHHHHHHHHHHH-----------------------------------------------------HHHHH--
Q ss_conf 55888028999986449999-----------------------------------------------------99989--
Q 000570 957 KTCRNAPIVKAIKQQNTDVQ-----------------------------------------------------NEFNM-- 981 (1415)
Q Consensus 957 ~~~~~a~~~~~l~~q~~~i~-----------------------------------------------------~ef~~-- 981 (1415)
.+++...+......+. ..+..
T Consensus 166 ----~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (548)
T 3vqt_A 166 ----ALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQA 241 (548)
T ss_dssp ----CCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGH
T ss_pred ----HCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf ----1026675445554238824767722515885330576531343210423378643232322354388999888888
Q ss_pred -HHHHHHHHHHHCC--CCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCEEE
Q ss_conf -8999999999807--831232013588962149947887789900489999999999999853------1146550279
Q 000570 982 -RLVQIVTQLKEQG--MNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------TFRNELQCTV 1052 (1415)
Q Consensus 982 -~i~~Ii~~L~e~g--l~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l------~~~~~~~~~V 1052 (1415)
........+...+ +..+.+. -+..+|+++.||++|.||..||+.++.+++.+..... ....++.+.|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~e~~~----~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~v 317 (548)
T 3vqt_A 242 EQLRMDLALLEEAGTPFDEERYL----KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVV 317 (548)
T ss_dssp HHHHHHHHHHHHHCCCCCHHHHH----TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHH----HCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 87666898875405736499998----29831026145455858999999999747998775432345589976743799
Q ss_pred EEEEEE---CCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHC-CCCCEEEECC
Q ss_conf 999998---175039999999328726999999426896101012202899883101100221000011-1245056015
Q 000570 1053 LEVKVI---EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQ 1128 (1415)
Q Consensus 1053 lEv~~~---~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~-aa~gv~i~~~ 1128 (1415)
+.+... ...|.+..++|++|+|+.|+.|.....+ ...+|..++...+... .+|. +.+|..+++.
T Consensus 318 fKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~--~~~rv~~l~~~~g~~~----------~~v~~a~AGdIvai~ 385 (548)
T 3vqt_A 318 FKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTG--KDVTVANATIFMAQDR----------TGVEEAFPGDIIGIP 385 (548)
T ss_dssp EEEECC-------CEEEEEEEESCEETTCEEEETTTT--EEEECTTCEECCCSSC----------CSSCEECTTCEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEEECCEECCCCEEEEECCC--CCCCCCHHHHHCCCCC----------CCCCEEECCCEEEEC
T ss_conf 9997057767787699999853544589989841233--3000011334205666----------436788469899856
Q ss_pred CCCCCCCCCCEE
Q ss_conf 653235799529
Q 000570 1129 GLEHAIAGTGLY 1140 (1415)
Q Consensus 1129 gL~~~~aG~~~~ 1140 (1415)
||.....|+.+.
T Consensus 386 gl~~~~~GDTl~ 397 (548)
T 3vqt_A 386 NHGTIKIGDTFT 397 (548)
T ss_dssp CSSCCCTTCEEE
T ss_pred CCCCCCCCCEEC
T ss_conf 876676378816
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=273.98 Aligned_cols=253 Identities=19% Similarity=0.203 Sum_probs=166.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEE-CEEEECCCCCCEEEEECC-CCCCCCCCCEEEEECCCCC
Q ss_conf 35898066871799987899999983953355557603752-036721333100000001-3445677979999399985
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~i-ga~~~p~e~i~~~t~~i~-~~~~~~~~~l~iIDTPGHe 899 (1415)
.+|| |+|+||+|||||||+++|+.......+.+.+.... ...+.+.+.-|.+|.... ..+.|+...|+|||||||.
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~ 78 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM 78 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCH
T ss_conf 9569--99994899998999999999749975153212687456884889867976895259999899899999798817
Q ss_pred CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH----
Q ss_conf 1145775015766630798712579976579999999721995599998236645875588802899998644999----
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV---- 975 (1415)
Q Consensus 900 ~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i---- 975 (1415)
+|+..+.|+++.||+||||||+..|+++||..+|+++..+++|.|++|||||+. .+++...+......+
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~-------~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN-------GIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS-------SCCSHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCHHHHHHHHHHHHCCCC
T ss_conf 889999999998598999996898974789999999997599828998423545-------6899999999999867873
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHC-CCCHHHHHCC----CCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf ----------------------999989899999999980-7831232013----5889621499478877899004899
Q 000570 976 ----------------------QNEFNMRLVQIVTQLKEQ-GMNTELYYKN----KDRGETFNIVPTSAISGEGIPDLLL 1028 (1415)
Q Consensus 976 ----------------------~~ef~~~i~~Ii~~L~e~-gl~~e~~~~~----~~~g~~v~iVpvSA~tGeGI~eLl~ 1028 (1415)
...+......++..+... .+........ -..+..+|+++.||++|.||..||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 21431576334211122156664455406677876530677566677888876640245214632343425878342765
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCC
Q ss_conf 9999999999985311465502799999981750399999993287269999994268
Q 000570 1029 LLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1029 ~l~~l~~~~l~e~l~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~ 1086 (1415)
.+..+++.+. -....++.+.|+.+.+..+.|.+..++|++|+|+.|+.+.+....
T Consensus 232 ~i~~~~p~p~---~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~ 286 (638)
T 3j25_A 232 VITNKFYSST---HRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE 286 (638)
T ss_dssp HHHHSCCCSG---GGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC
T ss_pred HHHCCCCCCC---CCHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 4320366751---000111121455544211585599999973863378744345675
No 8
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=273.56 Aligned_cols=257 Identities=23% Similarity=0.329 Sum_probs=178.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCC----------------CCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCC
Q ss_conf 806687179998789999998395335----------------5557603752036721333100000001344567797
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQE----------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~----------------geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~ 889 (1415)
+.|+|+||+|+|||||+++|++..... ....|||+.+....+.. ....
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~----------------~~~k 360 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT----------------PTRH 360 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------SSCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC----------------CCEE
T ss_conf 489998289988999999998640235643233322356642132375368888999747----------------9879
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 99993999851145775015766630798712579976579999999721995-59999823664587558880289999
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||++|..++.++++.+|++|||||+++|+++||.+++.++...++| +||++||||++. ....
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~------d~e~---- 430 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD------DEEL---- 430 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC------CHHH----
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CHHH----
T ss_conf 999989883999999999884399999998187667588999999998759986999985145421------0346----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC--------CHHHHHHHHHHHHHHHHHH
Q ss_conf 86449999999898999999999807831232013588962149947887789--------9004899999999999998
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMVE 1040 (1415)
Q Consensus 969 ~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe--------GI~eLl~~l~~l~~~~l~e 1040 (1415)
+......+...+...++. +..++++++||++|. ||..|+..|..+++.+
T Consensus 431 ----------le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P--- 487 (1289)
T 3avx_A 431 ----------LELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP--- 487 (1289)
T ss_dssp ----------HHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC---
T ss_pred ----------HHHHHHHHHHHHHHCCCC----------CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC---
T ss_conf ----------899999999999851346----------663159998722477778630036346676776536887---
Q ss_pred HHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCC-
Q ss_conf 5311465502799999981750399999993287269999994268961010122028998831011002210000111-
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA- 1119 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~a- 1119 (1415)
......++++.|.+++.+.|.|+++.|+|.+|+|++||.|+++|.+++.. .+|+++++++..+..
T Consensus 488 ~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~--------------~kVksI~~~~~~v~eA 553 (1289)
T 3avx_A 488 ERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQK--------------STCTGVEMFRKLLDEG 553 (1289)
T ss_dssp CCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEE--------------EEEEEEECSSCEESEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCCEE--------------EEEEEEEECCCEEEEE
T ss_conf 54421210330000001258867999999663896198899936899636--------------9997886369245387
Q ss_pred --CCCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf --24505601565323579952992998
Q 000570 1120 --AQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1120 --a~gv~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
+..+.+.+.|+.......+.+++.+.
T Consensus 554 ~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 554 RAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp ETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ECCCCCEEEEEECCHHCCCCCCEEECCC
T ss_conf 2687423676401051188625896599
No 9
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=273.44 Aligned_cols=261 Identities=24% Similarity=0.387 Sum_probs=186.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCEEEEECEEEECCCCCC
Q ss_conf 98066871799987899999983953-------------------------------35555760375203672133310
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENIR 873 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~p~e~i~ 873 (1415)
.+.|+|+||+|+|||||+++|++... .....+|||.+++..++.+..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-- 94 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-- 94 (439)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC--
T ss_conf 239999938999989999999987399766788888888875066622245543365567606943987589996198--
Q ss_pred EEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEE
Q ss_conf 00000013445677979999399985114577501576663079871257997-------6579999999721995-599
Q 000570 874 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FIV 945 (1415)
Q Consensus 874 ~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~-------~QT~E~l~ll~~~~vP-~IV 945 (1415)
..++|||||||++|..++.++++.+|++|||||+.+|++ +||.+++.++...++| +||
T Consensus 95 --------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 --------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred --------------EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf --------------579999899707889999854856899999998997841145677743899999999849984899
Q ss_pred EEEECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 998236645-8755888028999986449999999898999999999807831232013588962149947887789900
Q 000570 946 ALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 946 viNKiD~~~-~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
++||||++. +|. ...+......+...+...|+... ..+++||+||++|.||.
T Consensus 161 viNK~Dl~~~~~~------------------~~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 161 LINKMDDPTVNWS------------------NERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANLK 213 (439)
T ss_pred EEECCCCCCCCHH------------------HHHHHHHHHHHHHHHHHHCCCCC---------CCEEEEEEECCCCCCCC
T ss_conf 7534787662257------------------99999999999999987423545---------77059996435775531
Q ss_pred HHHHHHHHHHHHHHHHHH--------HCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHH
Q ss_conf 489999999999999853--------114655027999999817503999999932872699999942689610101220
Q 000570 1025 DLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096 (1415)
Q Consensus 1025 eLl~~l~~l~~~~l~e~l--------~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~l 1096 (1415)
+++..+.++....+.+.+ ....++++.|.+++ .|.|+++.|+|.+|+|++||.|++++++
T Consensus 214 ~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~---------- 281 (439)
T 3j2k_7 214 EQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK---------- 281 (439)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCC----------
T ss_conf 1233454467267999997478976677787289999897--4997599999973479549999973589----------
Q ss_pred CCCCCCCCCEEEEEEEEHHHHCCC---CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 289988310110022100001112---45056015653235799529929986
Q 000570 1097 LTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1097 l~p~p~~e~rvk~~~~~~~ev~aa---~gv~i~~~gL~~~~aG~~~~vv~~~~ 1146 (1415)
...+|+++++++..+..+ +.+.+.+.|++......+.+++.+..
T Consensus 282 ------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 282 ------HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred ------CEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCCCC
T ss_conf ------45788999778807377328985468992355643487087327999
No 10
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=271.79 Aligned_cols=291 Identities=21% Similarity=0.226 Sum_probs=191.2
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC--------CC----------CCCCCCEEEEECEEEECCCCCCEEEEECCCC
Q ss_conf 13589806687179998789999998395--------33----------5555760375203672133310000000134
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~--------v~----------~geagGITq~iga~~~p~e~i~~~t~~i~~~ 882 (1415)
+++|| |||+||+|||||||+++|+... +. ....+|||....+.++.|....
T Consensus 11 ~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------- 79 (709)
T 4fn5_A 11 NRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------- 79 (709)
T ss_dssp GGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT---------
T ss_pred HHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCC---------
T ss_conf 87729--9999489999899999999962998757604389756798499997497297603899961676---------
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 45677979999399985114577501576663079871257997657999999972199559999823664587558880
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a 962 (1415)
..++...|||||||||.+|+....|+++.||+||||||+..|+++||...|+++..+++|.|++|||||+. .+
T Consensus 80 ~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~-------~a 152 (709)
T 4fn5_A 80 GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ-------GA 152 (709)
T ss_dssp SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST-------TC
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-------CC
T ss_conf 77887799999398976408999999987485899997998975638999999997599869997166666-------76
Q ss_pred HHHHHHHHHHHHH-------------------------------------------------H---HHHHHH--------
Q ss_conf 2899998644999-------------------------------------------------9---999898--------
Q 000570 963 PIVKAIKQQNTDV-------------------------------------------------Q---NEFNMR-------- 982 (1415)
Q Consensus 963 ~~~~~l~~q~~~i-------------------------------------------------~---~ef~~~-------- 982 (1415)
++...+.+....+ . ..+...
T Consensus 153 ~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (709)
T 4fn5_A 153 NFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA 232 (709)
T ss_dssp CHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68999877622045622555435573001553898751067884044578631013463788888999988789887744
Q ss_pred HHHHHHHHHHCC-CCHHHHH----CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-----------------
Q ss_conf 999999999807-8312320----135889621499478877899004899999999999998-----------------
Q 000570 983 LVQIVTQLKEQG-MNTELYY----KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE----------------- 1040 (1415)
Q Consensus 983 i~~Ii~~L~e~g-l~~e~~~----~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e----------------- 1040 (1415)
...++..+.+.+ +...... .....+..+|++..||+++.|++.||+.++.+++.+...
T Consensus 233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999998744776277777788886540024550440044677668888878860799754443013377654322223
Q ss_pred HHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC
Q ss_conf 53114655027999999817503999999932872699999942689610101220289988310110022100001112
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa 1120 (1415)
..+...|+.+.|..+......|....++|++|+|+.|+.|.....+ . ..+|..++........ ...+ +.
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~-~-~~~v~~l~~~~g~~~~-------~v~~--~~ 381 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKG-K-KERVGRMVQMHANQRE-------EIKE--VR 381 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTC-C-CCBCCCEECCCSSCCC-------EESE--EC
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCC-C-EEEECCEEEEECCEEE-------EEEE--EC
T ss_conf 5786676157999950356777057773258988889999972399-5-7750340676301014-------8206--63
Q ss_pred CCEEEECCCCCCCCCCCCEE
Q ss_conf 45056015653235799529
Q 000570 1121 QGIKITAQGLEHAIAGTGLY 1140 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~ 1140 (1415)
+|..+++.||.....|+.+.
T Consensus 382 aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 382 AGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp TTCEEEECSCSSCCTTCEEE
T ss_pred CCCEEEECCCCCCCCCCEEC
T ss_conf 78701463887676388756
Done!