RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000571
(1414 letters)
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 2738 bits (7099), Expect = 0.0
Identities = 1084/1307 (82%), Positives = 1184/1307 (90%)
Query: 108 AELLKSVQKKISNQIVGLKTEHCFNIGLDSRISTKKLEVLKWLLQETYEPENLGTESFLE 167
AELL+ VQ K+SN IV ++TE CFN+GL+S +S +KLE LKWLL+ET+EPENLGTESFLE
Sbjct: 1 AELLRKVQTKVSNDIVSIETEQCFNVGLESPLSAEKLETLKWLLRETFEPENLGTESFLE 60
Query: 168 KKKQKGLKAVIVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLERSRRYLLFSKGALQDN 227
KK +GL AV+VEVGPRLSFTTAWS NAVSIC CGLTEVTRLERSRRYLLFS L ++
Sbjct: 61 AKKSEGLNAVVVEVGPRLSFTTAWSTNAVSICSACGLTEVTRLERSRRYLLFSSSPLDES 120
Query: 228 QINDFAAMVHDRMTECVYTEKLTSFETSVVPEEVRFVPVMENGRKALEEINQEMGLAFDE 287
QIN FAAMVHDRMTECVY + LTSFE+ VVPE V VPVME GR ALEEIN+EMGLAFDE
Sbjct: 121 QINAFAAMVHDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEGRAALEEINKEMGLAFDE 180
Query: 288 QDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKS 347
QDL YYTRLF++DIKR+PT VELFDIAQSNSEHSRHWFF+GK+VIDG+PM +TL Q+VK
Sbjct: 181 QDLDYYTRLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFSGKLVIDGQPMPKTLFQMVKD 240
Query: 348 TLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCA 407
TL+ANPNNSVIGFKDNSSAI+GF V+ LRPV PGS L+ +DLD+L TAETHNFPCA
Sbjct: 241 TLKANPNNSVIGFKDNSSAIRGFVVQPLRPVSPGSPSPLAPVDRDLDILLTAETHNFPCA 300
Query: 408 VAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLA 467
VAPYPGAETGAGGRIRDTHATGRGSFVVA TAGYCVGNL +EGSYAPWED SF YPSNLA
Sbjct: 301 VAPYPGAETGAGGRIRDTHATGRGSFVVAGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLA 360
Query: 468 SPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHN 527
SPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLP+G+RREWLKPIMFSGGIGQIDH
Sbjct: 361 SPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERREWLKPIMFSGGIGQIDHT 420
Query: 528 HISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYR 587
H++KGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDA+LDFNAVQRGDAEM+QKLYR
Sbjct: 421 HLTKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYR 480
Query: 588 VVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPKGAEIDIRAIIVGDHTLSVLEIWGA 647
VVRAC+EMGE NPI+SIHDQGAGGNCNVVKEIIYPKGAEIDIRA++VGDHTLSVLEIWGA
Sbjct: 481 VVRACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYPKGAEIDIRAVVVGDHTLSVLEIWGA 540
Query: 648 EYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPP 707
EYQEQDA+L+KPESRDLLQSIC+RER SMAVIGTI G GRVVLVDSAA +KC+++GLPPP
Sbjct: 541 EYQEQDALLIKPESRDLLQSICDRERCSMAVIGTIDGSGRVVLVDSAAPEKCEANGLPPP 600
Query: 708 PPAVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLT 767
PPAVDL+LE+VLGDMPQKTFEF EPLDI PGITVMD+LKRVLRLPSVCSKRFLT
Sbjct: 601 PPAVDLDLEKVLGDMPQKTFEFKRVANKLEPLDIPPGITVMDALKRVLRLPSVCSKRFLT 660
Query: 768 TKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMAR 827
TKVDRCVTGLVAQQQTVGPLQI LADVAVIAQT+T LTGGACAIGEQPIKGL++PKAMAR
Sbjct: 661 TKVDRCVTGLVAQQQTVGPLQIPLADVAVIAQTHTGLTGGACAIGEQPIKGLVDPKAMAR 720
Query: 828 LAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDAATALAEAMIELGIAIDG 887
LAVGEALTNLVWAKVT+LS VKASGNWMYAAKLDGEGA MYDAA AL +AMIELG+AIDG
Sbjct: 721 LAVGEALTNLVWAKVTALSDVKASGNWMYAAKLDGEGADMYDAAVALRDAMIELGVAIDG 780
Query: 888 GKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDDGILLHIDLAKGKRR 947
GKDSLSMAA +GGEVVKAPG+LVIS YVTCPDITKTVTPDLKLGDDG+LLH+DL KGKRR
Sbjct: 781 GKDSLSMAAQAGGEVVKAPGNLVISAYVTCPDITKTVTPDLKLGDDGVLLHVDLGKGKRR 840
Query: 948 LGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEM 1007
LGGSALAQ +DQ+G++ PDL+DV YLK+ FE QDLI L+S GHDISDGGL+V LEM
Sbjct: 841 LGGSALAQAYDQIGDDCPDLDDVAYLKKAFEATQDLIAKRLISAGHDISDGGLVVTLLEM 900
Query: 1008 SFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVN 1067
+FAGN GI +DL S G+S F+TLFAEELGLVLEVS+ NLD V +KL AGV+AE+IGQV
Sbjct: 901 AFAGNCGINVDLPSSGHSAFETLFAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVT 960
Query: 1068 SSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASCVESEKEGLKSRCEPLWKL 1127
+S +E+KVDG T L+EKT+ LRDMWEETSF+LEK QRL SCV EKEGLKSR P WKL
Sbjct: 961 ASPLIEVKVDGATCLSEKTASLRDMWEETSFQLEKLQRLESCVAQEKEGLKSRKAPTWKL 1020
Query: 1128 SFTPSLTDEKYMNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISL 1187
SFTP+ TD+K MNATSKPKVA+IREEGSNGDREM+AAFYAAGFEPWDVTMSDL+NG ISL
Sbjct: 1021 SFTPAFTDKKIMNATSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISL 1080
Query: 1188 DEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMA 1247
D+FRGIVFVGGFSYADVLDSAKGW+ SIRFN+PLL QFQEFY RPDTFSLGVCNGCQLMA
Sbjct: 1081 DDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA 1140
Query: 1248 LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGV 1307
LLGW+PGPQVGG GAGGDPSQPRFVHNESGRFECRF+SVTIEDSPAIMLKGMEGSTLGV
Sbjct: 1141 LLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGMEGSTLGV 1200
Query: 1308 WAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDG 1367
WAAHGEGRAYFPD+ VLD +L S+LAPVRYCDDDG PTE YPFN NGSPLG+AA+CSPDG
Sbjct: 1201 WAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDG 1260
Query: 1368 RHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQNAREWCS 1414
RHLAMMPHPERCFLMWQ+PWYPK W VD GPSPWLKMFQNAREWC
Sbjct: 1261 RHLAMMPHPERCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWCE 1307
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of phosphoribosylformylglycinamidine
synthase, also called FGAM synthase, an enzyme of purine
de novo biosynthesis. This form is found mostly in
eukaryotes and Proteobacteria. In Bacillus subtilis PurL
(FGAM synthase II) and PurQ (FGAM synthase I), homologous
to different parts of this model, perform the equivalent
function; the unrelated small protein PurS is also
required and may be a third subunit [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 1310
Score = 1946 bits (5044), Expect = 0.0
Identities = 659/1339 (49%), Positives = 842/1339 (62%), Gaps = 52/1339 (3%)
Query: 96 FYRIPLLQDSAAAELLKSV-QKKISNQIVGLKTEHCFNIGLDSRI--STKKLEVLKWLLQ 152
F R P E L Q K+ G+ E C+ +G +S + ++ L L
Sbjct: 1 FLRGPSALSGFRLEKLLQKLQTKVPELT-GVYAEFCYFVGWESALTADEEEKLQLLLLAG 59
Query: 153 ETYEPENLGTESFLEKKKQKGLKAVIVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLER 212
EP +S L + ++EVGPRL + WS+ A SI R CGL +V R+ER
Sbjct: 60 SVLEPP----QSPLGRG--------LLEVGPRLGTISPWSSKATSIARNCGLAKVDRIER 107
Query: 213 SRRYLLFSKGALQDNQINDFAAMVHDRMTECVYTEKLTSFETSVVPEEVRF--VPVMENG 270
RRY L L + Q AA++HDRMTE V ++ +FE VPE + + V+ G
Sbjct: 108 GRRYYLSGAHPLSEEQEAQAAALLHDRMTESVLPHEIEAFELFSVPEPLNLTTIDVLGGG 167
Query: 271 RKALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKI 330
R ALE+ NQE+GLA DE ++ Y T+ F ++++RNP+ VEL AQ+NSEH RH F
Sbjct: 168 RLALEKANQELGLALDEDEIDYLTKRF-QELQRNPSDVELMMFAQANSEHCRHKIFNADW 226
Query: 331 VIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESS 390
+IDGK ++L Q++KST +ANP N+V +KDNSS I+G V +LRP P
Sbjct: 227 IIDGKKQDKSLFQMIKSTHEANPENTVSAYKDNSSVIEGHKVGRLRPDPPTRPEYRQHQE 286
Query: 391 QDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEG 450
+ +L ETHN P A+AP+PGA TGAGG IRD ATGRG+ A G+CV NLN+ G
Sbjct: 287 DLVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPKAGLTGFCVSNLNIPG 346
Query: 451 SYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMR--LPSGQR 508
PWEDP F P +ASPL I+I+A GA+ + N+FG P + GY RTF ++ LP GQ
Sbjct: 347 LEQPWEDP-FQKPERIASPLDIMIEAPLGAAAFNNEFGRPNLLGYFRTFELKASLPGGQV 405
Query: 509 REWLKPIMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAD 568
R + KPIM +GGIG ID HI KGE + G L++ +GGPA IG+GGGAASSMVSG N AD
Sbjct: 406 RGYHKPIMLAGGIGSIDAEHIQKGEIEPGALLIVLGGPAMLIGLGGGAASSMVSGTNTAD 465
Query: 569 LDFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYP--KGAE 626
LDF +VQRG+ EM ++ V+ C ++GE NPIISIHD GAGG N + E+I+ +GA
Sbjct: 466 LDFASVQRGNPEMERRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPELIHDGGRGAV 525
Query: 627 IDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEG 686
ID+RA+ + D LS LEIW E QE+ +LV+ E+ ++ +ICERER AV+GT +G+G
Sbjct: 526 IDLRAVPLDDPGLSPLEIWCNESQERYVLLVRAENLEIFTAICERERCPFAVVGTATGDG 585
Query: 687 RVVLVDSAAVQKCQSSGLPPPPP--AVDLELERVLGDMPQKTFEFHHADQAREPLDIAPG 744
R+ LVD V++ P P VDL LE +LG MP+ T +PLDI PG
Sbjct: 586 RLTLVDDTPVRRNGQGDAPSHFPNNPVDLPLEVLLGKMPKMTRFVQRKAPMLQPLDIPPG 645
Query: 745 ITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDL 804
+ + ++L+RVLRLP+V SKRFL T DR V GLVA+ Q VGP Q LADVAV A ++
Sbjct: 646 LDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGPWQTPLADVAVTAASFDTY 705
Query: 805 TGGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEG 864
TG A AIGE+P K LL+PKA ARLAVGEA+TNL A V LS VK S NWM AA GE
Sbjct: 706 TGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGED 765
Query: 865 AAMYDAATALAEAMIELGIAIDGGKDSLSMAAYSGG----EVVKAPGSLVISVYVTCPDI 920
AA+YDA A++E LGIAI GKDSLSM + V APGSLVIS + PD+
Sbjct: 766 AALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDV 825
Query: 921 TKTVTPDLKL-GDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFET 979
KTVTPDLK D LL +DL GK RLGGSALAQVF Q+G + PDL+D LK F
Sbjct: 826 RKTVTPDLKHDKGDSHLLLVDLGPGKNRLGGSALAQVFGQLGGDCPDLDDPERLKAFFAV 885
Query: 980 VQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVL 1039
+Q L+ + L+ HD SDGGL+ LEM+FAG+ G+ +DL++ G+SLF LF EELG V+
Sbjct: 886 MQGLVAEGLLLAYHDRSDGGLVTTLLEMAFAGHCGLDVDLDALGDSLFAVLFNEELGAVI 945
Query: 1040 EVSKSNLDTVSKKLHDAGVSAEI--IGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETS 1097
+V+K +L V + L AG++A I IG + I V+G T L+EK S LRD+WEETS
Sbjct: 946 QVAKPDLAAVLELLRAAGLTALILGIGTPTGHPMIRISVNGATLLSEKRSELRDIWEETS 1005
Query: 1098 FELEKFQRLASCVESEKEGLKSRCEPLWKLSFTPSLTDEKYM---NATSKPKVAVIREEG 1154
F+L++ + C E E EGL+ R P KL T + ++ N KPKVA++RE+G
Sbjct: 1006 FQLQRLRDNPECAEEEFEGLRDRDGPGLKLPLTFDVNEDIAAPFINKGVKPKVAILREQG 1065
Query: 1155 SNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADVLDSAKGWSAS 1214
NGDREM+AAF AGFE WDV MSDL+ G + LDEFRG+ GGFSY DVL + KGW+ S
Sbjct: 1066 VNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKS 1125
Query: 1215 IRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFV 1273
I FN L +QFQ F+KRPDTFSLGVCNGCQ+++ LL WIPG + P FV
Sbjct: 1126 ILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENW-----------PHFV 1174
Query: 1274 HNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLA 1333
N S RFE R +SV + +SP+IML+GM GS L V AHGEG A F + + S LA
Sbjct: 1175 RNNSERFEARVASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLA 1234
Query: 1334 PVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWN 1393
+RY DDDGNPTE YP N NGSP G+A I S DGR MMPHPER F WQ W P++W+
Sbjct: 1235 ALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPERVFRAWQNSWRPEDWD 1294
Query: 1394 VDKKGPSPWLKMFQNAREW 1412
D +PWL++F+NAR W
Sbjct: 1295 ED----TPWLRLFRNARNW 1309
>gnl|CDD|235394 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 1611 bits (4174), Expect = 0.0
Identities = 539/1336 (40%), Positives = 765/1336 (57%), Gaps = 66/1336 (4%)
Query: 95 HFYRIPLLQDSAAAELLKSVQKKISNQIVGLKTEHCFNIGLDSRISTKKLEVLKWLLQET 154
P L +LL +Q + + E+ L + +S ++ L+ LL
Sbjct: 3 ILRGSPALSAFRLQKLLARLQA-AVLPVTSIYAEYVHFADLSAPLSAEEQAKLERLLTYG 61
Query: 155 YEPENLGTESFLEKKKQKGLKAVIVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLERSR 214
FL V PR + WS+ A I CGL + R+ER
Sbjct: 62 PAEHEPAGRLFL--------------VTPRPGTISPWSSKATDIAHNCGLAGIRRIERGI 107
Query: 215 RYLLFSKGALQDNQINDFAAMVHDRMTECVYT--EKLTSFETSVVPEEVRFVPVMENGRK 272
Y + + AL Q AA++HDRMTE V+ + + + P+ + V V+ GR
Sbjct: 108 AYYV--EAALSAEQRAALAALLHDRMTESVFADLDDAEALFSHHEPKPLTSVDVLGGGRA 165
Query: 273 ALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVI 332
ALE N E+GLA E ++ Y F + + RNPT VEL AQ+NSEH RH F I
Sbjct: 166 ALEAANVELGLALAEDEIDYLVEAFTK-LGRNPTDVELMMFAQANSEHCRHKIFNADWTI 224
Query: 333 DGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQD 392
DG+ ++L +++K+T + NP+ + +KDN++ ++G V + P P + + +
Sbjct: 225 DGEEQPKSLFKMIKNTHETNPDGVLSAYKDNAAVMEGSKVGRFFP-DPDTG-RYGYHQEP 282
Query: 393 LDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSY 452
+L ETHN P A++P+PGA TG+GG IRD ATGRGS A G+ V NL + G
Sbjct: 283 AHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFE 342
Query: 453 APWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSG--QRRE 510
PWE+ + P +AS L I+I+ G + + N+FG P + GY RTF ++ S + R
Sbjct: 343 QPWEED-YGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRTFEQKVNSHNEEVRG 401
Query: 511 WLKPIMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLD 570
+ KPIM +GGIG I +H+ KGE +G ++ +GGPA RIG+GGGAASSM SGQ+ DLD
Sbjct: 402 YHKPIMLAGGIGNIRADHVQKGEIPVGAKLIVLGGPAMRIGLGGGAASSMASGQSSEDLD 461
Query: 571 FNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYP--KGAEID 628
F +VQRG+ EM ++ V+ C ++G+ NPI+SIHD GAGG N E++ +G D
Sbjct: 462 FASVQRGNPEMERRCQEVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFD 521
Query: 629 IRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRV 688
+R I + +S LEIW E QE+ + + PE +L ++ICERER AV+G + E +
Sbjct: 522 LRKIPNDEPGMSPLEIWCNESQERYVLAIAPEDLELFEAICERERCPFAVVGEATEERHL 581
Query: 689 VLVDSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVM 748
L DS K VDL L+ +LG P+ + LD + GI +
Sbjct: 582 TLEDSHFDNK-----------PVDLPLDVLLGKPPKMHRDVKTVKAKGPALDYS-GIDLA 629
Query: 749 DSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGA 808
++++RVLRLP+V SK FL T DR VTGLVA+ Q VGP Q+ +AD AV A +Y G A
Sbjct: 630 EAVERVLRLPTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDGYAGEA 689
Query: 809 CAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMY 868
A+GE+ LL+ A AR+AVGEALTN+ A + L +K S NWM AA GE A +Y
Sbjct: 690 MAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDARLY 749
Query: 869 DAATALA-EAMIELGIAIDGGKDSLSM-AAYSGG---EVVKAPGSLVISVYVTCPDITKT 923
DA A+ E LGI I GKDSLSM + G + V +P SL+IS + D+ KT
Sbjct: 750 DAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKT 809
Query: 924 VTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDL 983
+TP L+ D LL IDL +GK RLGGSALAQV++Q+G+++PD++D LK F +Q L
Sbjct: 810 LTPQLRTDKDTALLLIDLGRGKNRLGGSALAQVYNQLGDKAPDVDDAEDLKGFFNAIQAL 869
Query: 984 IGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSK 1043
+ + L+ HD SDGGLL EM+FAG+ G+ +DL++ G+ LF EELG V++V
Sbjct: 870 VAEGLLLAYHDRSDGGLLTTLAEMAFAGHCGLDIDLDALGDDALAALFNEELGAVIQVRA 929
Query: 1044 SNLDTVSKKLHDAGVSAE--IIGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELE 1101
++ D V L + G+S +IG+ N+ + I +G T +E + LR W ETS++++
Sbjct: 930 ADRDAVEAILAEHGLSDCVHVIGKPNAGDRIVITRNGKTVFSESRTELRRWWSETSYQMQ 989
Query: 1102 KFQRLASCVESEKEGLKSRCEP--LWKLSFTPSL-TDEKYMNATSKPKVAVIREEGSNGD 1158
+ + C + E + + + +P KL+F P+ ++ ++PKVA++RE+G N
Sbjct: 990 RLRDNPECADQEFDAILDQADPGLNVKLTFDPNEDIAAPFIATGARPKVAILREQGVNSH 1049
Query: 1159 REMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFN 1218
EM+AAF AGF+ DV MSDL+ G ++L++F+G+V GGFSY DVL + +GW+ SI FN
Sbjct: 1050 VEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFN 1109
Query: 1219 QPLLNQFQEFYKRPDTFSLGVCNGCQLMALLG-WIPGPQVGGVHGAGGDPSQPRFVHNES 1277
L +QF+ F+ RPDTF+LGVCNGCQ+M+ L IPG + PRFV N S
Sbjct: 1110 PRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAE-----------HWPRFVRNRS 1158
Query: 1278 GRFECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRY 1337
+FE RFS V +++SP+I L+GM GS L + AHGEGRA FPD L + L +RY
Sbjct: 1159 EQFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAH-LAALEAKGLVALRY 1217
Query: 1338 CDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKK 1397
D+ G TE YP N NGSP G+ + + DGR MMPHPER F Q W+P+ W D
Sbjct: 1218 VDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHPERVFRTVQNSWHPEEWGED-- 1275
Query: 1398 GPSPWLKMFQNAREWC 1413
SPW++MF+NAR+W
Sbjct: 1276 --SPWMRMFRNARKWV 1289
>gnl|CDD|223124 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 487 bits (1256), Expect = e-155
Identities = 243/843 (28%), Positives = 373/843 (44%), Gaps = 109/843 (12%)
Query: 262 RFVPVMENGRKALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHS 321
V + R+ALE+ N E+GLA + + Y + + + R PT EL AQ SEH
Sbjct: 1 TMVDFLSGSREALEKANTELGLALSDDEYDY---IREFLLGREPTDTELGMFAQMWSEHC 57
Query: 322 RHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPG 381
+ ++L+++ +T + G DN+ +
Sbjct: 58 SYKSS------------KSLLKMFPTT--HTGEYVLSGPGDNAGVV-------------- 89
Query: 382 SRCQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGY 441
+ V+F E+HN P A+ PY GA TG GG IRD + G + +A
Sbjct: 90 ------DIGDGWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMG--ARPIALLDSL 141
Query: 442 CVGNLNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGM 501
G ++E I+ G + YGN+ G P + G R
Sbjct: 142 RFGIPDIEK------------------TRYIMKGVVAGIAAYGNEIGVPTVGGEFRFD-- 181
Query: 502 RLPSGQRREWLKPIMFSGGIGQIDHNHISKGE-PDIGMLVVKIGGPAYRIGMGGGAASSM 560
P++ +G +G I HI KGE G ++ +GG R G+GG +SM
Sbjct: 182 ------ESYVGNPLVNAGCVGLIRKEHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASM 235
Query: 561 VSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEII 620
G+ + D +VQ GD M ++L + C++ T I I D GAGG + E+
Sbjct: 236 ELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQ---TGLIKGIQDLGAGGLSCAISELA 292
Query: 621 YP--KGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAV 678
GAEID+ + + + +S EIW +E QE+ ++V PE + ICE+ER+ AV
Sbjct: 293 AKGGLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEICEKERLPAAV 352
Query: 679 IGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFHHAD-QARE 737
+G ++ E R+V+ P VDL ++ + G P+ +
Sbjct: 353 VGEVTDEPRLVVDWKGE-------------PVVDLPIDVLAGKAPKYDRPVKEPKKEEAG 399
Query: 738 PLDIAPGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVI 797
+ + ++L +VL P+V SK +L + DR V G GP+ AD AV+
Sbjct: 400 DVPEPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGNTVVDP--GPV----ADAAVL 453
Query: 798 AQTYTDLTGGACAI--GEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWM 855
+ TG A+ GE P LL+P A A+LAV EAL NL T + + N
Sbjct: 454 RISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLA---ATGAKPLALTDNLN 510
Query: 856 YAAKLDGEGAAMYDAATA-LAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVY 914
+ E + AA A LAEA LGI + GG SL + G+ + P + VI
Sbjct: 511 FGNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNE--TNGQPI--PPTPVIGAV 566
Query: 915 VTCPDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLK 974
D+ K +TP+LK + L + K LGGS LAQV+ +G+ P + D+ K
Sbjct: 567 GLVEDVRKVLTPELKKAGLLL---YLLGETKDELGGSELAQVYHGLGDGPPPVVDLAEEK 623
Query: 975 RVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNS-LFQTLFAE 1033
+ F+ ++ LI D V HD+SDGGL V EM+FAG G+ +DL+ G+ L LF+E
Sbjct: 624 KFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEIDLDELGDDRLDALLFSE 683
Query: 1034 ELG-LVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHLNEKTSLLRDM 1092
LG +++ V++ + + GV ++IG V H + V+ + LR+
Sbjct: 684 SLGRVIVVVAEEEAEVEGAE--AVGVPLKVIGLVGGDHEIGAAVNE-FLVPVSVEELREA 740
Query: 1093 WEE 1095
WE
Sbjct: 741 WEG 743
>gnl|CDD|222184 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase
domain. This family captures members that are not found
in pfam00310, pfam07685 and pfam13230.
Length = 259
Score = 444 bits (1144), Expect = e-146
Identities = 140/271 (51%), Positives = 176/271 (64%), Gaps = 13/271 (4%)
Query: 1144 KPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYAD 1203
+PKVA++RE G+N + EM+AAF AGF+ DV MSDL++G +SLD+F+G+V GGFSY D
Sbjct: 1 RPKVAILREPGTNCEYEMAAAFERAGFDAVDVHMSDLLSGRVSLDDFQGLVAPGGFSYGD 60
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGA 1263
VL S KGW+ SI FN L + F+ F+ R DTFSLG+CNGCQ + LG IPG
Sbjct: 61 VLGSGKGWAKSILFNPKLRDAFEAFFNRRDTFSLGICNGCQALIKLGLIPGG------EI 114
Query: 1264 GGDPSQPRFVHNESGRFECRFSSV-TIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDG 1322
P N+SGRFE R+ +V SP++ LKGMEGS L AHGEGR FPD+
Sbjct: 115 DLAEDWPTLTRNDSGRFESRWVNVKVSPKSPSVFLKGMEGSVL--PVAHGEGRFVFPDEE 172
Query: 1323 VLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLM 1382
VL + + RY D+DGNPT YPFN NGSP G+A ICSPDGRHL +MPHPER F
Sbjct: 173 VLKELEANGQVATRYVDNDGNPTMDYPFNPNGSPYGIAGICSPDGRHLGLMPHPERVFRP 232
Query: 1383 WQYPWYPKNWNVDKKGPSPWLKMFQNAREWC 1413
WQ+P +P+ SPW ++F+NA W
Sbjct: 233 WQWPHWPREE----GEESPWQRIFRNAVNWF 259
>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 313
Score = 379 bits (976), Expect = e-121
Identities = 116/387 (29%), Positives = 165/387 (42%), Gaps = 85/387 (21%)
Query: 309 ELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIK 368
EL AQ SEH RH F K +++ + +V
Sbjct: 1 ELGMFAQMWSEHCRHKSF--------KSLLKMIWAVV----------------------- 29
Query: 369 GFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHAT 428
F ETHN P A+ P+ GA TG GG IRD +
Sbjct: 30 ----------------------------FKVETHNHPSAIEPFGGAATGVGGIIRDILSM 61
Query: 429 GRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFG 488
G+ +A G G+L++ G P SP +IL G SDYGN G
Sbjct: 62 --GARPIALLDGLRFGDLDIPG----------YEPKGKLSPRRILDGVVAGISDYGNCIG 109
Query: 489 EPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHISKG-EPDIGMLVVKIGGPA 547
P + G R + P++ G +G + +HI K P G LVV +GG
Sbjct: 110 IPTVGGEVRFDPSY--------YGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRT 161
Query: 548 YRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQ 607
R G+GG SS +N ++LD AVQ GD M +KL + ET I+ I D
Sbjct: 162 GRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEAR---ETGLIVGIQDL 218
Query: 608 GAGGNCNVVKEIIY--PKGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLL 665
GAGG + V E+ GAEID+ + + + +S EIW +E QE+ ++V PE +
Sbjct: 219 GAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEF 278
Query: 666 QSICERERVSMAVIGTISGEGRVVLVD 692
+IC++E + AVIG ++ +GR+ L
Sbjct: 279 LAICKKEDLEAAVIGEVTDDGRLRLYY 305
Score = 41.3 bits (98), Expect = 0.002
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 23/131 (17%)
Query: 959 QVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLD 1018
QVG+ P +E K++ E + + L+ D+ GGL EM+ G G +D
Sbjct: 189 QVGD--PFME-----KKLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEID 241
Query: 1019 LNSEGNSLFQ----TLFAEELGL-------VLEVSKSNLDTVSKKLHDAGVSAEIIGQVN 1067
L + E+ + +L V +L+ + A +IG+V
Sbjct: 242 L-----DKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEFLAICKKEDLEAAVIGEVT 296
Query: 1068 SSHSVEIKVDG 1078
+ + G
Sbjct: 297 DDGRLRLYYKG 307
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion
of formylglycinamide ribonucleotide (FGAR) and glutamine
to formylglycinamidine ribonucleotide (FGAM), ADP, Pi,
and glutamate in the fourth step of the purine
biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having a
conserved Cys-His-Glu catalytic triad in the glutaminase
active site.
Length = 238
Score = 330 bits (848), Expect = e-104
Identities = 104/265 (39%), Positives = 141/265 (53%), Gaps = 28/265 (10%)
Query: 1147 VAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADVLD 1206
VAV+R GSN DR+M+ AF AGFE DV +DL+ G LD++ G+V GGFSY D L
Sbjct: 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLR 60
Query: 1207 SAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGAGGD 1266
+ +AS PLL + + + LG+CNG Q++ LG +PG +
Sbjct: 61 AGAIAAAS-----PLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKG----- 110
Query: 1267 PSQPRFVHNESGRFECRFSSVTIEDSPAIMLKG-MEGSTLGVWAAHGEGRAYFPDDGVLD 1325
+F+ RF ++ +E++ + KG MEG L + AHGEGR Y D+ + +
Sbjct: 111 ---LKFICRWQ----NRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAE 163
Query: 1326 RILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQY 1385
+ +A +Y DDDGN TE YP N NGS G+A IC+ DGR L MMPHPER WQ
Sbjct: 164 LEENGQIA--QYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPWQ- 220
Query: 1386 PWYPKNWNVDKKGPSPWLKMFQNAR 1410
G S LK+F+NA
Sbjct: 221 -------WERLLGGSDGLKLFRNAV 238
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 351 bits (903), Expect = e-101
Identities = 222/732 (30%), Positives = 323/732 (44%), Gaps = 91/732 (12%)
Query: 749 DSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIA---------- 798
+L ++L P+V SK ++ +DRC G VAQQ VGPL + ++D +++
Sbjct: 592 STLLQILSHPTVGSKEYIVRHIDRCGNGRVAQQPGVGPLDLPVSDYSIVVHSSVKTRRAI 651
Query: 799 -----------QTYTDLTG-------------------GAC-AIGEQPIKGLLNPKAMAR 827
Q +L G C A+GEQ K L+P A+
Sbjct: 652 ETPSSTEDLTYQEADELINSPLTWFDPDDESVLHPAVPGTCSALGEQGYKVQLDPILGAK 711
Query: 828 LAVGEALTNLVWAKVTSLSHV--KASGNWMYAAKLDGEGAAMYDAATALAEAMIELGIAI 885
A+ EALTNL+ A V +L + S W D + +Y A A E ELG+
Sbjct: 712 YAIVEALTNLMLAPVANLEDITITLSVTWPPT---DQAASELYRALAACKEFCRELGVNF 768
Query: 886 DGGKDSLSMAAYSGGEVVKAPG-----SLVISVYVTCPDITKTVTPDLKLGDDGILLHID 940
+ + A+ S + ++V + P T +TPDLK L+H+
Sbjct: 769 -----TFTSASSSPRQDQPPQPGPLFNTIVFTASAPVPSSTPRLTPDLK-KPGSALVHLS 822
Query: 941 LAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGL 1000
++ L GS Q+F PD+ YLK +F VQ LI + LV +GHD+SDGGL
Sbjct: 823 ISPEYT-LAGSVFEQIFGLKSGTLPDI-SPSYLKNLFRAVQHLISEGLVVSGHDVSDGGL 880
Query: 1001 LVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVSA 1060
+ C EM+ AG G+T+ + + + L LF+E G+V+EV S+L V +L +
Sbjct: 881 IACLAEMALAGGRGVTITVPAGEDPLQF-LFSETPGVVIEVPPSHLSAVLTRLRSRNIIC 939
Query: 1061 EIIGQVNSS---HSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASCVESEKEGL 1117
IG V S ++ + +G E S LR W SF E+F+ L + E
Sbjct: 940 YPIGTVGPSGPSNTFSVSHNGTVLFRESLSSLRSTW--RSFSDEQFELLRPDLTEESMYR 997
Query: 1118 KS--RCEPLWKLSFTPSLTDEKYM--NATSKPKVAVIREEGSNGDREMSAAFYAAGFEPW 1173
K E T + + +VAV+ G G + AAF AGF+P+
Sbjct: 998 KDYGNNEVDLGPLEEGLTTSPLRLYTCPDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPY 1057
Query: 1174 DVTMSDLINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPD 1233
V++ +L +G LDEF G+V G D A+ A++ N + + F RPD
Sbjct: 1058 PVSIEELKDGT-FLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPD 1116
Query: 1234 TFSLGVCN-GCQLMA---LLGWIPGPQVGGVHGAGGDPSQP-RFVHNESGRFECRFSSVT 1288
TFSLG GCQ++ +G V G + P N SG +E R+ +
Sbjct: 1117 TFSLGCGELGCQILFALKAVGSTAPSPVPGTE---TEEQWPITLEPNASGLYESRWLNFY 1173
Query: 1289 I-EDSPAIMLKGMEGSTLGVWAAHGE--GRAYFPDDGVLDRILHSHLAPVRYCD---DDG 1342
I E + ++ L+ + GS L W A G G Y P+DG+ + +S + D G
Sbjct: 1174 IPETTKSVALRPLRGSVLPCW-AQGTHLGFRY-PNDGMEYILRNSGQIAATFHGADVDPG 1231
Query: 1343 NPTEVYPFNVNG-SPLGVAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSP 1401
NP YP N G S VA +CS DGRHLA++ P F WQ+ P N K SP
Sbjct: 1232 NPARHYPRNPTGNSN--VAGLCSADGRHLALLFDPSLSFHPWQWQHVPPE-NGPLKV-SP 1287
Query: 1402 WLKMFQNAREWC 1413
W MFQ+ WC
Sbjct: 1288 WKLMFQDLHLWC 1299
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 335 bits (862), Expect = 7e-96
Identities = 246/1031 (23%), Positives = 393/1031 (38%), Gaps = 172/1031 (16%)
Query: 488 GEPLIQGYTRT---FGMRLPSGQRREWLKPIMFSGGIGQIDHNHISKGEPDIGMLVVKIG 544
G P G+ R + LP+ P + + ++ H I+ + G +V +G
Sbjct: 237 GVPTCGGFIRLISKNKLSLPTPYT-----PTYNTSILDRLCHVTINTADEPPGQDIVALG 291
Query: 545 GPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVR-ACIEMGETNPIIS 603
+ S LD N + L V+ CI + S
Sbjct: 292 QFEPSLLPDTPPLLYADSP-----LDVNKILT----ALALLTDDVKTPCI-------VGS 335
Query: 604 IHDQGAGGNCNVVK---EIIYPKGAEIDIRAI---------------------IVGDHTL 639
I G C+V + ++ P GAE+D+ + +V + L
Sbjct: 336 IRPLG---PCSVKEHLTALLPPCGAELDLSNLPDEVVAALARSSPANRVENEKMVKQYFL 392
Query: 640 SVL----------EIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVV 689
+V+ + + + L++ C + V+G + +
Sbjct: 393 NVVCSVVFLTVKNTPHNTGTEGVTPL-------ERLKTACRMFGCPVKVLGKLVPLPGLH 445
Query: 690 LVDSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFH-----HADQAREPLDIAPG 744
+V P P + T P+ +
Sbjct: 446 IVSDLF---------NPVPTYPTFDF-----TSFTPTSPLLPLGGPEPVSRTRPMFLDES 491
Query: 745 I-----TVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIA- 798
+ + ++ ++L P+V SK F+ +DRC G VAQQQ VGPL + ++D +++
Sbjct: 492 LNWQTLNLRSTILKILSHPTVGSKEFIVRHIDRCGNGRVAQQQGVGPLDLPVSDYSLVLH 551
Query: 799 ----------QTYTDL-------------------------TGGACAIGEQPIKGLLNPK 823
TY++ + A+GEQ K +PK
Sbjct: 552 NLSRPTDTTEVTYSENAMDLILDPDSWLYSWENEVLENPALSCVCSALGEQTYKVQADPK 611
Query: 824 AMARLAVGEALTNLVWAKVTSLSHV--KASGNWMYAAKLDGEGAAMYDAATALAEAMIEL 881
A A+ EAL NL + +L V S W D + + DA A + EL
Sbjct: 612 RGATYAITEALLNLSLSPWNTLEDVIITLSVTWSPT---DHVYSLLKDALRACKDFCEEL 668
Query: 882 GIAIDGGKDSLSMAAYSGGEVVKAPG--SLVISVYVTCPDITKTVTPDLKLGDDGILLHI 939
G++ +++ AA S + + S+V S K +TPDLK L+ +
Sbjct: 669 GVSF-----TVTSAASSPTQDSGSAPFMSIVFSASCPVLLSAKKITPDLKS-HGSHLIWL 722
Query: 940 DLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGG 999
L L GS Q+ P L LK++ +Q L+ + ++ +GHD+SDGG
Sbjct: 723 SLHPSYT-LAGSIFEQILGLSFIRLPAL-SPVSLKKLLSALQTLVKEGVIVSGHDVSDGG 780
Query: 1000 LLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVS 1059
L+ C EM+ +G G+ + L G + L +E G+V+EV S++ V + L G+
Sbjct: 781 LVACVAEMALSGGKGVRITL-PHGTDPLEFLCSETPGVVIEVDPSSMYAVLQFLRSEGLV 839
Query: 1060 AEIIGQVNS---SHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASC-VESEKE 1115
++IG+V S + + + E SLL+ W SF E+ L E
Sbjct: 840 FQVIGRVGESGPSPTFSVVHNSTVLFQEPLSLLQGTWR--SFSDEENTLLCPNLEPREMH 897
Query: 1116 GLKSRC-EPLWKLSFTPSLTDEKYMNATSKP--KVAVIREEGSNGDREMSAAFYAAGFEP 1172
L E + P +VAV+ G + + AA AGF+P
Sbjct: 898 VLDYGYNEMDFGGVPKGLPLSPLRFFTCPDPRHQVAVLLLPGQSVPHGLLAALTNAGFDP 957
Query: 1173 WDVTMSDLINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRP 1232
V++++L LD F G++ G D A+ +A++ NQ L F RP
Sbjct: 958 RIVSITELKKTD-FLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRP 1016
Query: 1233 DTFSLGVCN-GCQLMA---LLGWIPGPQVGGVHGAGGDPSQP-RFVHNESGRFECRFSSV 1287
DTFSLG GCQL+ ++G+ V + +P R N SG +E R+ +
Sbjct: 1017 DTFSLGFGELGCQLLLALNIVGYTQSSPFITVP---TEVQEPPRLEKNASGLYESRWLNF 1073
Query: 1288 TI-EDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCD---DDGN 1343
I E + ++ L+ + GS L WA Y PDDGV + + +S + G
Sbjct: 1074 YIPETTKSVFLRPLRGSVLPCWAQGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSSGL 1133
Query: 1344 PTEVYPFNVNG-SPLGVAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPW 1402
P YP N +G S VA +CS DGRHLA++ P F WQ+ P N N + SPW
Sbjct: 1134 PATNYPRNPSGGSN--VAGLCSADGRHLALLIDPSLSFFPWQWQHVPPN-NPPLQ-VSPW 1189
Query: 1403 LKMFQNAREWC 1413
MFQ W
Sbjct: 1190 KLMFQRLHLWS 1200
>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the purine
biosynthetic pathway. In eukaryotes and Gram-negative
bacteria, FGAR-AT is encoded by the purL gene as a
multidomain protein with a molecular mass of about 140
kDa. In Gram-positive bacteria and archaea FGAR-AT is a
complex of three proteins: PurS, PurL, and PurQ. PurL
itself contains two tandem N- and C-terminal domains
(four domains altogether). The N-terminal domains bind
ATP and are related to the ATP-binding domains of HypE,
ThiL, SelD and PurM.
Length = 264
Score = 275 bits (705), Expect = 6e-84
Identities = 100/274 (36%), Positives = 134/274 (48%), Gaps = 10/274 (3%)
Query: 793 DVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASG 852
D AV+ G A + GE P LL+P A A LAV EA+ NLV L +
Sbjct: 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPL-AITDCL 59
Query: 853 NWMYAAKLDGEGAAMYDAATALAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVIS 912
N+ K +GE + +A L +A LG + GGKDSL E V P +LVI
Sbjct: 60 NFGNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSLYNET----EGVAIPPTLVIG 115
Query: 913 VYVTCPDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPY 972
D+ K VT D K D + L I K + ALA + +G +P L D+
Sbjct: 116 AVGVVDDVRKIVTLDFKKEGDLLYL-IGETKDELGGSEYALA--YHGLGGGAPPLVDLER 172
Query: 973 LKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFA 1032
K +F+ VQ+LI + LV + HD+SDGGL V EM+FAG G +DL+ + LF+
Sbjct: 173 EKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAEDE-LLFS 231
Query: 1033 EELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQV 1066
E LG VL K + V + +AGV A +IG V
Sbjct: 232 ESLGRVLVEVKPENEEVF-EAEEAGVPATVIGTV 264
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 244 bits (624), Expect = 2e-73
Identities = 97/271 (35%), Positives = 138/271 (50%), Gaps = 43/271 (15%)
Query: 1144 KPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYAD 1203
+PKVAV+R G+N D +M+AAF AGFE DV SDL+ G +F G+V GGFSY D
Sbjct: 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGD 57
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGA 1263
L + G A+I P++++ +EF ++ LG+CNG Q+++ G +PG
Sbjct: 58 YLRA--GAIAAI---APVMDEVREFAEK-GKPVLGICNGFQILSEAGLLPG--------- 102
Query: 1264 GGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDDG 1322
NES RFECR+ + +E++ G E G + + AHGEGR Y DD
Sbjct: 103 -------ALTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYA-DDE 154
Query: 1323 VLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLM 1382
L + + RY D++G E N NGS G+A I + DG L MMPHPER
Sbjct: 155 TLAELEENGQVVFRYVDNNGETEEYA--NPNGSVNGIAGITNEDGNVLGMMPHPERAS-- 210
Query: 1383 WQYPWYPKNWNVDKKGPSPWLKMFQNAREWC 1413
D L++F++AR++
Sbjct: 211 --ESLLG---GED------GLRLFRSARKYL 230
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase,
clade II. This model represents a single-molecule form
of phosphoribosylformylglycinamidine synthase, also
called FGAM synthase, an enzyme of purine de novo
biosynthesis. This model represents a second clade of
these enzymes found in Clostridia, Bifidobacteria and
Streptococcus species. This enzyme performs the fourth
step in IMP biosynthesis (the precursor of all purines)
from PRPP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 1239
Score = 245 bits (626), Expect = 6e-66
Identities = 283/1178 (24%), Positives = 455/1178 (38%), Gaps = 210/1178 (17%)
Query: 273 ALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKI-- 330
L + E GLA +DL++ FK I RNPT E+ + S+H RH F ++
Sbjct: 175 DLAKFKAEQGLAMSLEDLKFIQDYFKS-IGRNPTETEIKVLDTYWSDHCRHTTFETELKH 233
Query: 331 -VID----GKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQ 385
K + + + + + + D ++ K LR + G
Sbjct: 234 VTFSDSKFQKQLKKAYEDYLAMREELGRSEKPVTLMDMATIF----AKYLR--KNGKLDD 287
Query: 386 LSESSQ--------DLDV---------LFTAETHNFPCAVAPYPGAETGAGGRIRDTHAT 428
L S + ++DV +F ETHN P + P+ GA T GG IRD +
Sbjct: 288 LEVSEEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDP-LS 346
Query: 429 GRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPL---QILIDASNGASDYGN 485
GR Y + V G+ DP+ L L +I A++G S YGN
Sbjct: 347 GRS---------YVYQAMRVTGA----GDPTVPISETLKGKLPQRKITTTAAHGYSSYGN 393
Query: 486 KFGEPLIQGYTRTFGMRLPSGQRREWLKP-----IMFSGG-IGQIDHNHISKGEPDIGML 539
+ G L +GQ E P M G + ++ + +P+ G +
Sbjct: 394 QIG--------------LATGQVSEIYHPGYVAKRMEVGAVVAATPKENVVREKPEPGDV 439
Query: 540 VVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETN 599
++ +GG R G+GG SS +L VQ+G+A +K+ R+ R G
Sbjct: 440 IILLGGKTGRDGIGGATGSSKEHTVESLELCGAEVQKGNAPEERKIQRLFRN----GNVT 495
Query: 600 PIIS-IHDQGAGGNCNVVKEIIYPKGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVK 658
+I +D GAGG + E+ G EID+ + L+ E+ +E QE+ AV+V
Sbjct: 496 RLIKKCNDFGAGGVSVAIGEL--ADGLEIDLNKVPKKYEGLNGTELAISESQERMAVVVS 553
Query: 659 PESRDLLQSICERERVSMAVIGTISGEGRVVL--------------VDSAAVQKCQSSGL 704
PE D + C E + V+ T++ + R+V+ +D+ V++
Sbjct: 554 PEDVDAFLAYCNEENLEATVVATVTEKPRLVMNWNGKTIVDLSRRFLDTNGVRQ------ 607
Query: 705 PPPPPAVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKR 764
+D ++ +P++ + + L +VL +V S++
Sbjct: 608 -----VIDAKVVDKDVKLPEERQKTSAETLEEDWL-------------KVLSDLNVASQK 649
Query: 765 FLTTKVDRCVTGLVAQQQTVGPLQITLADVAVI---AQTYTDLTGGACAIGEQPIKGLLN 821
L + D V G Q+T + +V T A A G P +
Sbjct: 650 GLQERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETHTASAIAWGFNPYIAEWS 709
Query: 822 PKAMARLAVGEALTNLVWAKVTSLSHVKASGNWM-YAAKLDGEGAAMYDAATAL---AEA 877
P A AV E+L LV A + KA ++ Y KLD + AL +A
Sbjct: 710 PYHGAAYAVIESLAKLVAAGA---DYKKARLSFQEYFEKLDKDAERWGKPFAALLGAIKA 766
Query: 878 MIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDDGILL 937
I+LG+ GGKDS+S E + P +L IS VT + + ++P+ K + I L
Sbjct: 767 QIDLGLPAIGGKDSMS----GTFEELTVPPTL-ISFAVTTANSRRVISPEFKAAGENIYL 821
Query: 938 HIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISD 997
+ G AL + + D + LK F +++LI D V + +
Sbjct: 822 ----------IPGQALE-------DGTIDFDL---LKENFAQIEELIADHKVVSASAVKY 861
Query: 998 GGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELG-LVLEVSKSNLDTVSKKLHDA 1056
GG+ +M+F G L+ N + LF + G + E + +
Sbjct: 862 GGVAESLAKMTFGNRIGAELN-----NPELEDLFTAQYGSFIFESPEEL----------S 906
Query: 1057 GVSAEIIGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFEL--EKFQRLASCVESEK 1114
+ E IGQ + +KV+G E+ L WE E+ KF+ VE
Sbjct: 907 IANVEKIGQTTADF--VLKVNGEKLDLEE---LESAWEGKLEEVFPSKFEDKKETVE--- 958
Query: 1115 EGLKSRCEPLWKLSFTPSLTDEKYMNATS----KPKVAVIREEGSNGDREMSAAFYAAGF 1170
P++ EK + KP+V + G+N + + + AF G
Sbjct: 959 ---------------VPAVASEKKVIKAKEKVEKPRVVIPVFPGTNSEYDSAKAFEKEGA 1003
Query: 1171 EPWDVTMSDLINGAIS---------LDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPL 1221
E V +L A+ +D+ + ++ GGFS D D + + A+I N +
Sbjct: 1004 EVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKV 1063
Query: 1222 LNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFE 1281
F R D LG+CNG Q + G +P + + P +N+ R
Sbjct: 1064 RVAIDSFLAR-DGLILGICNGFQALVKSGLLPYGNIEAANET-----SPTLTYNDINRHV 1117
Query: 1282 CRFSSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDD 1340
+ I + + L G+ G + +HGEGR D VL + + +Y D
Sbjct: 1118 SKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASD-EVLAELRENGQIATQYVDF 1176
Query: 1341 DGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPER 1378
+G P+ +N NGS L + I SPDGR M H ER
Sbjct: 1177 NGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGHSER 1214
>gnl|CDD|233552 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine synthase
II. Phosphoribosylformylglycinamidine synthase is a
single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 715
Score = 196 bits (500), Expect = 5e-52
Identities = 198/819 (24%), Positives = 315/819 (38%), Gaps = 136/819 (16%)
Query: 296 LFKEDIKRNPTTVELFDIAQSNSEH-----SRHWFFTGKIVIDGKPMVRTLMQIVKSTLQ 350
L +E + R P EL + SEH S+ + G
Sbjct: 8 LIREILGREPNDTELAMFSAMWSEHCSYKSSKKLL--KQFPTKGP--------------- 50
Query: 351 ANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAP 410
N + G +++ + + V+F E+HN P A+ P
Sbjct: 51 ----NVIQGPGEDAGVV--------------------DIGDGYAVVFKMESHNHPSAIEP 86
Query: 411 YPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPL 470
Y GA TG GG +RD + G + +A G L + +
Sbjct: 87 YNGAATGVGGILRDILSMG--ARPIALLDSLRFGPL--DDPKNRY--------------- 127
Query: 471 QILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHIS 530
+ G SDYGN+ G P + G F P++ +G + + I
Sbjct: 128 -LFEGVVAGISDYGNRIGVPTVGGEV-EFDESYNG-------NPLVNVMCVGLVRKDDIV 178
Query: 531 KGEPD-IGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVV 589
G+ G +V +GG R G+GG +S + + D AVQ GD + L +
Sbjct: 179 TGKAKGPGNKLVLVGGKTGRDGIGGATFASEELSEEAEEEDRPAVQVGDPFTEKLL---I 235
Query: 590 RACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAIIVGDHTLSVLEIWGA 647
A +E +T + I D GA G + E+ GAEI + + + + ++ EI +
Sbjct: 236 EATLEAVDTGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIYLDKVPLREPGMTPYEIMLS 295
Query: 648 EYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPP 707
E QE+ ++V PE + + I E+ + +VIG ++ EGR+ L V
Sbjct: 296 ESQERMLLVVAPEDVEEVLEIFEKYELPASVIGEVTDEGRIRLYYKGEV----------- 344
Query: 708 PPAVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLT 767
DL +E +L D P+ E + P + D+ +VL P++ SK ++
Sbjct: 345 --VADLPIE-LLADAPEYERPSEPPKYPEEEKEPEPPADLEDAFLKVLSSPNIASKEWVY 401
Query: 768 TKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMAR 827
+ D V Q +TV D AV+ T G A P L+P A A
Sbjct: 402 RQYDHEV-----QTRTV---VKPGEDAAVLRIKETGKLGLALTADCNPRYVYLDPYAGAA 453
Query: 828 LAVGEALTNLVWAKVTSLSHVKA--SGN-------WMYAAKLDGEGAAMYDAATALAEAM 878
AV EA NL L+ V GN W + + G L +A
Sbjct: 454 GAVAEAYRNLAAVGAEPLAAVDCLNFGNPERPEVYWQFVEAVKG-----------LGDAC 502
Query: 879 IELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDDGILLH 938
LG + GG SL +G + P ++ + D+ K +T + K D I L
Sbjct: 503 RALGTPVVGGNVSL-YNETNGVPIAPTPTIGMVGLV---EDVEKLLTSNFKKEGDAIYL- 557
Query: 939 IDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDG 998
+ + K LGGS +V + + D+ K + + V++ I LVS HD+S G
Sbjct: 558 --IGETKDELGGSEYLRVIHGIVSGQVPAVDLEEEKELADAVREAIRAGLVSAAHDVSRG 615
Query: 999 GLLVCTLEMSFAGNYGITLDLNSEGNSL-FQTLFAEELG-LVLEVSKSNLDTVSKKLHDA 1056
GL V EM+ A G +D++ ++ + LF+E G ++ V + + K
Sbjct: 616 GLAVALAEMAAASGIGAEVDIDEIASARPDELLFSESNGRAIVAVPEEKAEEAVKSK--- 672
Query: 1057 GVSAEIIGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEE 1095
GV A++IG+ + IK ++ LRD WEE
Sbjct: 673 GVPAKVIGKTGGD-RLTIKTGD-DTISVSVKELRDAWEE 709
>gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT) catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 272
Score = 167 bits (424), Expect = 3e-46
Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 30/292 (10%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
E HN P A+ P GA TG GG IRD ATG + +A +A + +
Sbjct: 3 EAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHP------ 56
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSG---QRREW 511
IL DA G ++ N+ G P+ G R QR
Sbjct: 57 -------------GEDAILYDAVKGVAELCNQLGLPIPVGKDRMSMKTRWQEGNEQREMT 103
Query: 512 LKPIMFSGGIGQIDHNHISK-GEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLD 570
P + G++ + + G ++ IGG G+GG A +S+ + L
Sbjct: 104 HPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGTALASV--ALSYRQLG 161
Query: 571 FNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYP--KGAEID 628
+ Q D + Y ++A + G +++ HD+GAGG + E+++ G ++D
Sbjct: 162 DKSAQVRDPAQEKGFYEAMQALVAAG---KLLAWHDRGAGGLLVALAELVFAGHCGVQVD 218
Query: 629 IRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIG 680
+ A+ + + LEI E QE+ + V+ E RD ++ + V+G
Sbjct: 219 LAALGDDEPDMEPLEIALFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLG 270
Score = 106 bits (267), Expect = 3e-25
Identities = 87/274 (31%), Positives = 127/274 (46%), Gaps = 16/274 (5%)
Query: 806 GGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGA 865
G A I E ++P A A VG A+ + + A + S NWM +A GE A
Sbjct: 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRD-IAATGIDAKPIALSANWMASAGHPGEDA 60
Query: 866 AMYDAATALAEAMIELGIAIDGGKDSLSM--AAYSGGEVVKA--PGSLVISVYVTCPDIT 921
+YDA +AE +LG+ I GKD +SM G E + P SLVIS + D
Sbjct: 61 ILYDAVKGVAELCNQLGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDD- 119
Query: 922 KTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQV---FDQVGNESPDLEDVPYLKRVFE 978
+ P L + +LL I KG LGG+ALA V + Q+G++S + D K +E
Sbjct: 120 RHTLPQLSTEGNALLL-IGGGKGHNGLGGTALASVALSYRQLGDKSAQVRDPAQEKGFYE 178
Query: 979 TVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEG------NSLFQTLFA 1032
+Q L+ + HD GGLLV E+ FAG+ G+ +DL + G L LF
Sbjct: 179 AMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFE 238
Query: 1033 EELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQV 1066
+ V++V + D V + + ++GQ
Sbjct: 239 SQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQA 272
>gnl|CDD|234921 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 177 bits (451), Expect = 9e-46
Identities = 201/773 (26%), Positives = 301/773 (38%), Gaps = 209/773 (27%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATG-R----------GSF---------- 433
V+F E+HN P AV PY GA TG GG +RD + G R G
Sbjct: 83 VVFKIESHNHPSAVEPYQGAATGVGGILRDIFSMGARPIALLDSLRFGELDHPKTRYLLE 142
Query: 434 -VVASTAGY--CVGNLNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEP 490
VVA GY C+G V G + D S+ L++A
Sbjct: 143 GVVAGIGGYGNCIGVPTVGGEV--YFDESYNG--------NPLVNA-------------- 178
Query: 491 LIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHISKGEPD-IGMLVVKIGGPAYR 549
+G + H+ I + +G VV +G R
Sbjct: 179 ----------------------------MCVGLVRHDDIVLAKASGVGNPVVYVGAKTGR 210
Query: 550 IGMGGGA-ASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQG 608
G+GG + AS+ +S +++ AVQ GD M + L + AC+E+ +T ++ I D G
Sbjct: 211 DGIGGASFASAELSEESEEKR--PAVQVGDPFMEKLL---IEACLELIKTGLVVGIQDMG 265
Query: 609 AGG----------NCNVVKEIIYPKGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVK 658
A G + G E+D+ + + + ++ EI +E QE+ ++VK
Sbjct: 266 AAGLTCSSSEMAAKGGL--------GIELDLDKVPLREEGMTPYEIMLSESQERMLLVVK 317
Query: 659 PESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDLELERV 718
P + + +I E+ + AVIG ++ +GR+ + V D+ E +
Sbjct: 318 PGKEEEVLAIFEKWDLDAAVIGEVTDDGRLRVYHHGEV-------------VADVPAEAL 364
Query: 719 LGDMPQKTFEFHHADQAREPLDI--APGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTG 776
+ P + + LD A + ++L ++L P++ SK ++ + D V
Sbjct: 365 ADEAP----VYDRPYKEPAYLDELQADPEDLKEALLKLLSSPNIASKEWVYEQYDHEV-- 418
Query: 777 LVAQQQTVGPLQITLADVAVI---------AQTYTDLTGGACAIGEQPIKGLLNPKAMAR 827
Q TV D AV+ A T TD L+P A+
Sbjct: 419 ---QTNTV---VKPGGDAAVLRIRGGGKGLALT-TDCNPRYVY---------LDPYEGAK 462
Query: 828 LAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYD------------------ 869
LAV EA NL A G A+ D
Sbjct: 463 LAVAEAARNLA-----------AVG---------ATPLAITDCLNFGNPEKPEVMWQFVE 502
Query: 870 AATALAEAMIELGIAIDGGKDSLSMAAY--SGGEVVKAPGSLVISVYVTCPDITKTVTPD 927
A LA+A LG + GG SL Y +GG + P + VI + D++K T
Sbjct: 503 AVRGLADACRALGTPVVGGNVSL----YNETGGTAIY-P-TPVIGMVGLIDDVSKRTTSG 556
Query: 928 LKLGDDGILLHIDLAKGKRRLGGSALAQVF-DQVGNESP--DLEDVPYLKRVFETVQDLI 984
K D I L L + K LGGS +V VG P DLE KR+ E V++ I
Sbjct: 557 FKKEGDLIYL---LGETKDELGGSEYLKVIHGHVGGRPPKVDLEA---EKRLQELVREAI 610
Query: 985 GDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELG-LVLEVSK 1043
+ LV++ HD+S+GGL V EM+ AG G +DL S+G LF+E G V+ V
Sbjct: 611 REGLVTSAHDVSEGGLAVALAEMAIAGGLGAEVDL-SDGLRPDALLFSESQGRYVVSVPP 669
Query: 1044 SNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEET 1096
N + AGV A IG V ++++K + L E LR+ WE
Sbjct: 670 ENEEAFEALAEAAGVPATRIGVVG-GDALKVKGNDTESLEE----LREAWEGA 717
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 159 bits (403), Expect = 2e-43
Identities = 82/247 (33%), Positives = 126/247 (51%), Gaps = 10/247 (4%)
Query: 1145 PKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADV 1204
+VAV+R EG+N + E AF G EP V ++DL S+ ++ +V GGFS D
Sbjct: 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDY 63
Query: 1205 LDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGAG 1264
+ + ++A R L +EF +G+CNG Q++ LG +PG
Sbjct: 64 IRAGAIFAA--RLKAVLRKDIEEFIDE-GYPIIGICNGFQVLVELGLLPG-----FDEIA 115
Query: 1265 GDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVL 1324
P + NES RFECR + + E+ I K ++ V AH EGR F ++ +L
Sbjct: 116 EKP-EMALTVNESNRFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEIL 174
Query: 1325 DRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQ 1384
+R++ + RY D++GN YP+N NGS +A I + G + +MPHPER F +Q
Sbjct: 175 ERLIENDQIVFRYVDENGNYAG-YPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFYGYQ 233
Query: 1385 YPWYPKN 1391
+P++ K
Sbjct: 234 HPYWEKE 240
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 227
Score = 138 bits (350), Expect = 8e-37
Identities = 82/237 (34%), Positives = 117/237 (49%), Gaps = 31/237 (13%)
Query: 1146 KVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADVL 1205
KVAVIR G+N DR+ A G + V D SL ++ G+V GGFSY D L
Sbjct: 2 KVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG-----SLPDYDGVVLPGGFSYGDYL 56
Query: 1206 DSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGAGG 1265
+ +AS P++ + +EF ++ LG+CNG Q++ G +PG
Sbjct: 57 RAGAIAAAS-----PIMQEVREFAEK-GVPVLGICNGFQILVEAGLLPGA---------- 100
Query: 1266 DPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGM-EGSTLGVWAAHGEGRAYFPDDGVL 1324
+ N+S RF CR+ + +E++ I K +G + + AHGEGR Y+ DD L
Sbjct: 101 ------LLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGR-YYADDETL 153
Query: 1325 DRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFL 1381
R+ + RYCD+DG+ E N NGS +A I + G L MMPHPER
Sbjct: 154 ARLESNDQVVFRYCDEDGDVAE--EANPNGSVGNIAGIVNERGNVLGMMPHPERASE 208
>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 119 bits (300), Expect = 5e-30
Identities = 77/239 (32%), Positives = 103/239 (43%), Gaps = 46/239 (19%)
Query: 1146 KVAVIREEGSNGDREMSAAF-YAAGFEP---WDVTMSDLINGAISLDEFRGIVFVGGFSY 1201
KVAVI GSN DR+M+ A G EP W LD +V GGFSY
Sbjct: 2 KVAVIVFPGSNCDRDMARALRDLLGAEPEYVWH--------KETDLDGVDAVVLPGGFSY 53
Query: 1202 ADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVH 1261
D L A F P++ +EF ++ LG+CNG Q++ G +PG
Sbjct: 54 GDYLRCG----AIAAF-SPIMKAVKEFAEK-GKPVLGICNGFQILTEAGLLPGA------ 101
Query: 1262 GAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPD 1320
N S +F CR + +E++ G E G + + AHGEG Y+ D
Sbjct: 102 ----------LTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGN-YYAD 150
Query: 1321 DGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERC 1379
+ L R+ + RYCD+ N NGS +A I + G L MMPHPER
Sbjct: 151 EETLKRLEGNGQVVFRYCDE----------NPNGSVNDIAGIVNEKGNVLGMMPHPERA 199
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 97.8 bits (244), Expect = 2e-23
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 537 GMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMG 596
G +++ +G G+ G S + G D AV GD + L VV +G
Sbjct: 3 GDVLILLGS----SGLHGSGLSLVRKGLED----DGAVPLGDPLLEPTLIYVVLLLAALG 54
Query: 597 ETNPIISIHDQGAGGNCNVVKEIIYP--KGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDA 654
+ + HD GG + E+ GAEID+ + + + L LE+ +E Q +
Sbjct: 55 L---VKAAHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGL 111
Query: 655 VLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVD 692
V+V PE + + +I E E + AVIG ++ G + LV
Sbjct: 112 VVVVPEEAEAVLAILEEEGLPAAVIGEVTAGGGLTLVV 149
Score = 87.4 bits (217), Expect = 7e-20
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 949 GGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMS 1008
G + + L D + V L LV HDI+ GGL EM+
Sbjct: 16 GSGLSLVRKGLEDDGAVPLGDPLLEPTLIYVVLLLAALGLVKAAHDITGGGLAGALAEMA 75
Query: 1009 FAGNYGITLDLNS-----EGNSLFQTLFAEELG-LVLEVSKSNLDTVSKKLHDAGVSAEI 1062
A G +DL+ E + LF+E G ++ V + V L + G+ A +
Sbjct: 76 PASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEGLPAAV 135
Query: 1063 IGQVNSSHSVEIKVD 1077
IG+V + + + V
Sbjct: 136 IGEVTAGGGLTLVVK 150
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 75.7 bits (186), Expect = 1e-13
Identities = 79/333 (23%), Positives = 137/333 (41%), Gaps = 51/333 (15%)
Query: 365 SAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRD 424
S K + +++L + + F E+HN P A+ PY GA TG GG IRD
Sbjct: 34 SHTKKY-IRRLPKTGFEGNAGVVNLDDYYSIAFKIESHNHPSAIEPYNGAATGVGGIIRD 92
Query: 425 THATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQI--LIDA-SNGAS 481
A G P+ + L + +ID G +
Sbjct: 93 VLAMG-------------------------------ARPTAIFDSLHMSRIIDGIIEGIA 121
Query: 482 DYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHISKGEPDIGMLVV 541
DYGN G P + G +R+ S L ++ + G+ + D SK G ++V
Sbjct: 122 DYGNSIGVPTVGGE-----LRISSLYAHNPLVNVL-AAGVVRNDMLVDSKASRP-GQVIV 174
Query: 542 KIGGPAYRIGMGGGA-ASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETNP 600
GG R G+ G + AS ++G+ L ++Q GD A+K+ ++ A +EM E
Sbjct: 175 IFGGATGRDGIHGASFASEDLTGEKATKL---SIQVGDP-FAEKM--LIEAFLEMVEEGL 228
Query: 601 IISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVK 658
+ D GAGG + E++ GA + + + + + + EI +E QE+ AV+
Sbjct: 229 VEGAQDLGAGGVLSATSELVAKGGLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTS 288
Query: 659 PESRDLLQSICERERVSMAVIGTISGEGRVVLV 691
PE + I ++ + ++ + + ++
Sbjct: 289 PEKASRILEIAKKHLLFGDIVAEVIDDPIYRVM 321
>gnl|CDD|216008 pfam00586, AIRS, AIR synthase related protein, N-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
N-terminal domain of AIR synthase forms the dimer
interface of the protein, and is suggested as a putative
ATP binding domain.
Length = 96
Score = 52.9 bits (128), Expect = 2e-08
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 23/112 (20%)
Query: 385 QLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVG 444
+L E + TH A+ PY G T G + D A G+ +A G +G
Sbjct: 8 RLGEGKALVVTTDGVVTHVHFAAIDPYDGGATAVAGNLSDLAA--MGAKPLALLDGLALG 65
Query: 445 NLNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYT 496
+ L + G ++ N+FG PL+ G T
Sbjct: 66 EGL---------------------DPEWLEEIVRGIAEAANEFGVPLVGGDT 96
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the protein,
and is suggested as a putative ATP binding domain.
Length = 222
Score = 53.2 bits (128), Expect = 2e-07
Identities = 55/258 (21%), Positives = 88/258 (34%), Gaps = 60/258 (23%)
Query: 819 LLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDAATALAEAM 878
+NP A RLAVG A+ ++ + + + L+ + + D +AEA
Sbjct: 14 AINPWAGGRLAVGGAVNDIA---AMGARPIALLASLSLSNGLEVDI--LEDVVDGVAEAC 68
Query: 879 IELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDDGILLH 938
+LG+ I GG S+S T L + G++
Sbjct: 69 NQLGVPIVGGHTSVSPG-------------------------TMGHKLSLAVFAIGVVEK 103
Query: 939 IDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDG 998
+ G L + + V +L+ V HDI+DG
Sbjct: 104 DRVIDSSGARPGDVLI-LTGV------------------DAVLELVAAGDVHAMHDITDG 144
Query: 999 GLLVCTLEMSFAGNYGITLDLNS-----EGNSLFQT------LFAEELGLVLEVSKSNLD 1047
GLL E++ A G +DL + L LF GL++ V D
Sbjct: 145 GLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAVPAEEAD 204
Query: 1048 TVSKKLHDAGVSAEIIGQ 1065
V L+ G+ A +IG+
Sbjct: 205 AVLLLLNGNGIDAAVIGR 222
Score = 48.2 bits (115), Expect = 8e-06
Identities = 50/294 (17%), Positives = 86/294 (29%), Gaps = 80/294 (27%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
+ + + N P A+ P+ G GG + D A G + +A A + N
Sbjct: 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMG--ARPIALLASLSLSNGLEVD---- 55
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
IL D +G ++ N+ G P++ G+T + K
Sbjct: 56 -----------------ILEDVVDGVAEACNQLGVPIVGGHTSVSPGTMGH-------KL 91
Query: 515 IMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAV 574
+ IG ++ + +
Sbjct: 92 SLAVFAIGVVEKDRVIDSS---------------------------------------GA 112
Query: 575 QRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAI 632
+ GD + V + G + ++HD GG + E+ GAEID+ AI
Sbjct: 113 RPGDVLILTG-VDAVLELVAAG---DVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAI 168
Query: 633 ---IVGDHTLSVLEIWGAEYQEQDAVL--VKPESRDLLQSICERERVSMAVIGT 681
V + +L V E D + + + AVIG
Sbjct: 169 PLDEVVRWLCVEHIEEALLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase (GATase1)-like
domain. This group includes proteins similar to Class I
glutamine amidotransferases, the intracellular PH1704
from Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium meliloti
Rm1021 ThuA. and, the A4 beta-galactosidase middle
domain. The majority of proteins in this group have a
reactive Cys found in the sharp turn between a beta
strand and an alpha helix termed the nucleophile elbow.
For Class I glutamine amidotransferases proteins which
transfer ammonia from the amide side chain of glutamine
to an acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase,
cytidine triphosphate synthetase, gamma-glutamyl
hydrolase, imidazole glycerol phosphate synthase and,
cobyric acid synthase. For Pyrococcus horikoshii PH1704,
the Cys of the nucleophile elbow together with a
different His and, a Glu from an adjacent monomer form a
catalytic triad different from the typical GATase1 triad.
The E. coli HP-II C-terminal domain, S. meliloti Rm1021
ThuA and the A4 beta-galactosidase middle domain lack the
catalytic triad typical GATaseI domains. GATase1-like
domains can occur either as single polypeptides, as in
Class I glutamine amidotransferases, or as domains in a
much larger multifunctional synthase protein, such as
CPSase.
Length = 115
Score = 48.7 bits (116), Expect = 9e-07
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 1147 VAVIREEGSNGDREMS--AAFYAAGFEPWDVTMS-DLINGAISLDEFRGIVFVGGFSYAD 1203
VAV+ G S A AG E V+ + + LD++ G++ GG D
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMAL 1248
L ++ LL +E LG+C G QL+ L
Sbjct: 61 DL----------ARDEALLALLREAAAA-GKPILGICLGAQLLVL 94
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase (GATase1)-like
domain. This group contains proteins similar to Class I
glutamine amidotransferases, the intracellular PH1704
from Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium meliloti
Rm1021 ThuA, the A4 beta-galactosidase middle domain and
peptidase E. The majority of proteins in this group have
a reactive Cys found in the sharp turn between a beta
strand and an alpha helix termed the nucleophile elbow.
For Class I glutamine amidotransferases proteins which
transfer ammonia from the amide side chain of glutamine
to an acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an adjacent
monomer form a catalytic triad different from the typical
GATase1 triad. Peptidase E is believed to be a serine
peptidase having a Ser-His-Glu catalytic triad which
differs from the Cys-His-Glu catalytic triad of typical
GATase1 domains, by having a Ser in place of the reactive
Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic triad
typical GATaseI domains. GATase1-like domains can occur
either as single polypeptides, as in Class I glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common core
of a typical GTAse1 domain.
Length = 92
Score = 47.2 bits (112), Expect = 2e-06
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 1147 VAVIREEGSNGDREMS--AAFYAAGFEPWDVTMS-DLINGAISLDEFRGIVFVGGFSYAD 1203
VAV+ GS S A AG E V+ + + LD++ G++ GG D
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLM 1246
L +++ LL +E LG+C G QL+
Sbjct: 61 DL----------AWDEALLALLREAAAA-GKPVLGICLGAQLL 92
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 46.9 bits (112), Expect = 2e-05
Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 30/132 (22%)
Query: 1182 NGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCN 1241
+ LD GI+ GG V D W P + P LG+C
Sbjct: 38 AEELPLDSPDGIIISGG--PMSVYDEDP-WL-------PREKDLIKDAGVPGKPVLGICL 87
Query: 1242 GCQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGME 1301
G QL+A +GG G E G V + + + G+
Sbjct: 88 GHQLLAK-------ALGGKVERGP--------KREIGWTP-----VELTEGDDPLFAGLP 127
Query: 1302 GSTLGVWAAHGE 1313
V+ +HG+
Sbjct: 128 DLFTTVFMSHGD 139
>gnl|CDD|188564 TIGR04049, AIR_rel_sll0787, AIR synthase-related protein, sll0787
family. Members of this family include sll0787 from
Synechocystis sp. PCC 6803 and resemble the C-terminal
region of MSMEG_0567 from Mycobacterium smegmatis, where
the N-terminal is a GNAT family N-acetyltransferase. The
conserved cluster is found broadly (Cyanobacteria,
Proteobacteria, Actinobacteria) in about 8 percent of
genomes and appears to be biosynthetic. The product is
unkown [Unknown function, Enzymes of unknown
specificity].
Length = 316
Score = 43.5 bits (103), Expect = 5e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 986 DELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNS----EGNSLFQTLFA-EELGLVLE 1040
LV DIS GG+L L + G LDL++ G L + L + G +L
Sbjct: 205 AGLVDAAKDISMGGILGTALMLLECSGVGADLDLDAIPRPPGVDLDRWLTSFPSFGFLLA 264
Query: 1041 VSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHL 1082
V +++D V+++ G++ IG++ + V +K G + L
Sbjct: 265 VRPADVDAVAQRFAARGLACAAIGEITAGGQVVLKDGGESAL 306
>gnl|CDD|225055 COG2144, COG2144, Selenophosphate synthetase-related proteins
[General function prediction only].
Length = 324
Score = 41.3 bits (97), Expect = 0.003
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 974 KRVFETVQDLI--GDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNS----EGNSLF 1027
K F +L+ G +LV G D+S+GGLL L + G +DL+S
Sbjct: 192 KEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPADVDFR 251
Query: 1028 QTLFAE-ELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVD 1077
Q L G VL V +++ V + G A +IG+V + I
Sbjct: 252 QWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDG 302
>gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2.
A single member of this protein family is found in each
of the first ten complete genome sequences of archaeal
methanogens, and nowhere else. Sequence similarity to
various bacterial proteins is reflected in Pfam models
pfam00586 and pfam02769, AIR synthase related protein
N-terminal and C-terminal domains, respectively. The
functions of proteins in this family are unknown, but
their role is likely one essential to methanogenesis
[Energy metabolism, Methanogenesis].
Length = 323
Score = 40.2 bits (94), Expect = 0.005
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 957 FDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSF-AGNYGI 1015
+D +SPD YL+ + V ++ +LV G DIS+ G L+ TL M A G
Sbjct: 186 WDTTTMKSPD-----YLRAQMDAVVEIAERKLVKAGKDISNPG-LIGTLGMLLEASRVGA 239
Query: 1016 TLDLNS----EGNSLFQTL-FAEELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSH 1070
+DL S E + L G VL N+ + + L DAG++A +IG+V
Sbjct: 240 EVDLESIPKPEDVDMVTWLKMYPGSGFVLTADPENVREIVRVLEDAGLTASVIGEVIEDG 299
Query: 1071 SVEIKVD 1077
+ +
Sbjct: 300 KLYVSDG 306
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup 3
of unknown function. The family of PurM related proteins
includes Hydrogen expression/formation protein HypE, AIR
synthases, FGAM synthase and Selenophosphate synthetase
(SelD). They all contain two conserved domains and seem
to dimerize. The N-terminal domain forms the dimer
interface and is a putative ATP binding domain.
Length = 283
Score = 38.7 bits (91), Expect = 0.016
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 972 YLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSF-AGNYGITLDLNS----EGNSL 1026
L+R + +L LV DIS+ G ++ TL M A G +DL++ EG L
Sbjct: 185 LLRRQIALLPELAERGLVHAAKDISNPG-IIGTLGMLLEASGVGAEIDLDAIPRPEGVDL 243
Query: 1027 FQTLFA-EELGLVLEVSKSNLDTVSKKLHDAGVSAEIIG 1064
+ L G +L N D V G++A +IG
Sbjct: 244 ERWLKCFPGFGFLLTARPENADEVVAVFAAVGITAAVIG 282
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1
of unknown function. The family of PurM related proteins
includes Hydrogen expression/formation protein HypE, AIR
synthases, FGAM synthase and Selenophosphate synthetase
(SelD). They all contain two conserved domains and seem
to dimerize. The N-terminal domain forms the dimer
interface and is a putative ATP binding domain.
Length = 298
Score = 35.3 bits (82), Expect = 0.22
Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 61/225 (27%)
Query: 874 LAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDIT---KTVTPDL-K 929
+ EA ELG++I GG EV +ISV T K VTP K
Sbjct: 103 INEAAKELGVSIVGGHT----------EVTPGVTRPIISV--TAIGKGEKDKLVTPSGAK 150
Query: 930 LGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFET---VQD--LI 984
GDD I + KG G + LA F++ + E++ ++F V++ +
Sbjct: 151 PGDD-----IVMTKGAGIEGTAILANDFEEELKKRLSEEELREAAKLFYKISVVKEALIA 205
Query: 985 GDELVSTGHDISDGGLLVCTLEMSFAGNYGIT------------------LDLN-----S 1021
+ V+ HD ++GG+L E++ A G+ L ++ S
Sbjct: 206 AEAGVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIRQETKEICEALGIDPLRLIS 265
Query: 1022 EGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQV 1066
G +L L V D + L +AG+ A +IG++
Sbjct: 266 SG-TL---LIT--------VPPEKGDELVDALEEAGIPASVIGKI 298
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This N-terminal region would be the
smaller subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 188
Score = 33.4 bits (77), Expect = 0.47
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 1237 LGVCNGCQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIM 1296
LG+C G QLMA Q+GG G E G+ + + I D +
Sbjct: 74 LGICYGMQLMAK-------QLGGEVGRAE--------KREYGK-----AELEILDEDDL- 112
Query: 1297 LKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPV 1335
+G+ VW +HG+ P+ + S PV
Sbjct: 113 FRGLP-DESTVWMSHGDKVKELPEG--FKVLATSDNCPV 148
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine
amidotransferase (GATase1) domain. This group contains a
subgroup of proteins having the Type 1 glutamine
amidotransferase (GATase1) domain. GATase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. Glutamine
amidotransferases (GATase) includes the triad family of
amidotransferases which have a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. In this
subgroup this triad is conserved. GATase activity can be
found in a range of biosynthetic enzymes, including:
glutamine amidotransferase, formylglycinamide
ribonucleotide, GMP synthetase , anthranilate synthase
component II, glutamine-dependent carbamoyl phosphate
synthase, cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 33.4 bits (77), Expect = 0.54
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 1167 AAGFEPWDVTMSDLINGAI--SLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQ 1224
AG E ++ + D+ G + LD++ G+V +GG V + W + L
Sbjct: 22 EAGAETIEIDVVDVYAGELLPDLDDYDGLVILGG--PMSVDEDDYPWL------KKLKEL 73
Query: 1225 FQEFYKRPDTFSLGVCNGCQLMAL-LG 1250
++ LG+C G QL+A LG
Sbjct: 74 IRQALAAGKPV-LGICLGHQLLARALG 99
>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), N-terminal domain [Amino acid
transport and metabolism].
Length = 450
Score = 33.8 bits (78), Expect = 0.77
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 865 AAMYDAATALAEAM 878
A+M D ATA AEAM
Sbjct: 140 ASMLDEATAAAEAM 153
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 33.2 bits (77), Expect = 0.98
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 37/120 (30%)
Query: 865 AAMYDAATALAEAMIELGIAIDGGKDSLSMAA-YSGGEVVKAPGSL------VISVYVTC 917
A+MYD ATALAEA + MA + + V G++ V+ Y+
Sbjct: 132 ASMYDGATALAEAAL--------------MAVRITKRKKVLVSGAVHPEYREVLKTYLKG 177
Query: 918 PDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPD----LEDVPYL 973
I P +DG+ DL + + A V + P+ +ED+ +
Sbjct: 178 QGIEVVEVPY----EDGV---TDLEALEAAVDDDTAAVVV-----QYPNFFGVIEDLEEI 225
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 32.6 bits (75), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 860 LDGEGAAMYDAATALAEAM 878
+D A++ D ATA AEA
Sbjct: 79 MDVANASLQDEATAAAEAA 97
>gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal
subgroup 2 of unknown function. The family of PurM
related proteins includes Hydrogen expression/formation
protein HypE, AIR synthases, FGAM synthase and
Selenophosphate synthetase (SelD). They all contain two
conserved domains and seem to dimerize. The N-terminal
domain forms the dimer interface and is a putative ATP
binding domain.
Length = 346
Score = 32.4 bits (74), Expect = 1.8
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 978 ETVQDLIGDELVSTGH---DISDGGLLVCTLEMSFAGNYGITLD-------LNSEGNSLF 1027
+ + L LVS H D+++GG+ LE+S + D +N + +
Sbjct: 200 KACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKML 259
Query: 1028 QTLFAEELGLVLE-----VSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDG 1078
+ L + LG+ L+ + + + + L +AGV A+ +G+V V + V G
Sbjct: 260 EELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREAGVRADEVGRVEEGRGVPLVVTG 315
>gnl|CDD|235439 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase;
Provisional.
Length = 327
Score = 31.6 bits (73), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1036 GLVLEVSKSNLDTVSKKLHDAGVSAEIIGQV 1066
G+VL V + D L AG A +IG+V
Sbjct: 297 GMVLIVPPEDADAALALLEAAGEDAWVIGRV 327
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 31.0 bits (71), Expect = 3.1
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 41/130 (31%)
Query: 1185 ISLDEFRGIVFVGGFS--YADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNG 1242
I L +GI+ GG S Y + + R + + P LG+C G
Sbjct: 37 IKLKNPKGIILSGGPSSVYEED---------APRVDPEIFE-----LGVP---VLGICYG 79
Query: 1243 CQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEG 1302
QL+A +GG G E G+ E + I+DS + +G+
Sbjct: 80 MQLIAK-------ALGGKVERG--------DKREYGKAE-----IEIDDSSPL-FEGLPD 118
Query: 1303 STLGVWAAHG 1312
VW +HG
Sbjct: 119 EQT-VWMSHG 127
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 31.9 bits (73), Expect = 3.1
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 1311 HGEGRAYFPD-DGVLDRILHSHLAPVRYCDDDGNPTEVYPF 1350
+ + D L RI+ S L P++YC P+ V F
Sbjct: 434 SPKDLEWLQSLDKFLQRIVMSKLNPLKYC----LPSVVSEF 470
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 31.9 bits (73), Expect = 3.2
Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 52/234 (22%)
Query: 1037 LVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGL---THLNEKTSLLRDMW 1093
+ + KS LD V +LHD G+ + +E GL L +
Sbjct: 9 VSIIGLKSELDPVLAELHDFGL-VHLE-------DLEEGEKGLKELEKLKVAEVAQISLS 60
Query: 1094 EETSFELEKFQRLASCV------ESEKEGLKSRCEPLWKLSFTPSLTDEK---------- 1137
S L+ + + E E L++ + L ++ +
Sbjct: 61 SLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEE 120
Query: 1138 ---YMNATSKPKVAVIREEGSNGDREMSA--------AFYAAGFEPWDVTMSDLINGAIS 1186
++ + ++ E + G + + G I
Sbjct: 121 RLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGL--VRREKLEALVGVIE 178
Query: 1187 LDEF---------RGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKR 1231
+ IV G D + + F + +F
Sbjct: 179 DEVALYGENVEASVVIVVAHGAEDLDKVSK---ILNELGFELYEVPEFDGGPSE 229
>gnl|CDD|224884 COG1973, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 449
Score = 31.6 bits (72), Expect = 3.4
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 978 ETVQDLIGDELVSTGH---DISDGGLLVCTLEMSFAGNYGITLD-------LNSEGNSLF 1027
+ ++ L+S H D+++GG+ LE+S + D +N + +
Sbjct: 275 RACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKML 334
Query: 1028 QTLFAEELGLVLE-----VSKSNLDTVSKKLHDAGVSAEIIGQVNSSHS-VEIKVDGLTH 1081
+ L + LG+ ++ + D V K L AGV AE +G+V V + G
Sbjct: 335 EELNIDPLGVSIDSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEGGQGVILVDGG--- 391
Query: 1082 LNEKTSLLRDMWEETSF 1098
+ L+ + E+++
Sbjct: 392 ---EERELKPRFRESAY 405
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and
eukaryotic organisms for synthesis of Secys-tRNA, the
precursor of selenocysteine in selenoenzymes. The
N-terminal domain of SelD is related to the ATP-binding
domains of hydrogen expression/formation protein HypE,
the AIR synthases, and FGAM synthase and is thought to
bind ATP.
Length = 287
Score = 31.3 bits (72), Expect = 3.5
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 999 GLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGV 1058
GLL LEM A G++ +++ + L QT GL+ V + + L G
Sbjct: 226 GLLGHLLEM--ARASGVSAEIDLDKLPLLQT----SGGLLAAVPPEDAAALLALLKAGGP 279
Query: 1059 SAEIIGQV 1066
A IIG+V
Sbjct: 280 PAAIIGEV 287
>gnl|CDD|235372 PRK05248, PRK05248, hypothetical protein; Provisional.
Length = 121
Score = 29.8 bits (68), Expect = 3.5
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 295 RLFKEDIKRNPT-TVELFDIAQSNSEHSRHWFFTGK---IVIDGKP-MVR 339
R F E++ +N E+ A + R W G + +DG+ MVR
Sbjct: 26 RWFNEEVGKNLAKLDEVLAAAAAVKGSEREWQLAGHEYTLWLDGEEVMVR 75
>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase),
one of eleven enzymes required for purine biosynthesis,
catalyzes the conversion of formylglycinamide
ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the
fifth step in de novo purine biosynthesis. The N-terminal
domain of PurM is related to the ATP-binding domains of
hydrogen expression/formation protein HypE, the AIR
synthases, selenophosphate synthetase (SelD), and FGAM
synthase and is thought to bind ATP.
Length = 297
Score = 30.9 bits (71), Expect = 4.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQV 1066
+G+VL VS+ + D V + L G A +IG+V
Sbjct: 265 IGMVLIVSEEDADEVLEILEKLGEKAYVIGEV 296
>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins
[General function prediction only].
Length = 368
Score = 30.8 bits (69), Expect = 5.7
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 1098 FELEKFQRLASCVESEKEGLKSRCEPLWKLSFTPSLT--DEKYMNATSKPKVAVIREEGS 1155
F ++ ++ S + K PLW+ L ++K ++T+K + + +
Sbjct: 90 FNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIEN 149
Query: 1156 NGDREMS 1162
GD S
Sbjct: 150 RGDNNSS 156
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase. The enzyme
tRNA adenylyltransferase, also called
tRNA-nucleotidyltransferase and CCA-adding enzyme, can
add or repair the required CCA triplet at the 3'-end of
tRNA molecules. Genes encoding tRNA include the CCA tail
in some but not all bacteria, and this enzyme may be
required for viability. Members of this family represent
a distinct clade within the larger family pfam01743 (tRNA
nucleotidyltransferase/poly(A) polymerase family
protein). The example from Streptomyces coelicolor was
shown to act as a CCA-adding enzyme and not as a poly(A)
polymerase [Protein synthesis, tRNA and rRNA base
modification].
Length = 466
Score = 30.8 bits (70), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 1231 RPDTFSLGVCNGCQLMALLGWIPGPQVG 1258
RPD +G ++M +LG PGP+VG
Sbjct: 415 RPDL------DGNEIMEILGIKPGPEVG 436
>gnl|CDD|219597 pfam07823, CPDase, Cyclic phosphodiesterase-like protein. Cyclic
phosphodiesterase (CPDase) is involved in the tRNA
splicing pathway. This protein exhibits a bilobal
arrangement of two alpha-beta modules. Two antiparallel
helices are found on the outer side of each lobe and
frame an antiparallel beta-sheet that is wrapped around
an accessible cleft. Moreover, the beta-strands of each
lobe interact with the other lobe. The central
water-filled cavity houses the enzyme's active site.
Length = 192
Score = 30.1 bits (68), Expect = 6.0
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 700 QSSGLPPPPPAVDLELERVLGDMP--QKTFEFHHADQAREPLDIAPGITV--------MD 749
+ PPPP+ D E ER+ + Q F E P IT+ D
Sbjct: 3 IALWTCPPPPSSDPEYERLQRLIESLQTLFPG-------ESPSFEPHITLTSGISLDTKD 55
Query: 750 SLKRVLRLPSVCSKRFLTTKVDRCVTG 776
+KRVL K K D +G
Sbjct: 56 DVKRVLESACAGLKSLPLVKFDGVSSG 82
>gnl|CDD|151508 pfam11062, DUF2863, Protein of unknown function (DUF2863). This
bacterial family of proteins have no known function.
Length = 398
Score = 30.8 bits (70), Expect = 6.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 1322 GVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNG 1354
GV D + P YC+D G P ++P + G
Sbjct: 351 GVTDIRRLAERFPPEYCEDCGAP--LFP-DPEG 380
>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 30.4 bits (70), Expect = 7.2
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 24/77 (31%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G QLMA LG G V AG E GR + + +++ +
Sbjct: 79 LGICYGMQLMAHQLG-------GKVERAG---------KREYGR-----AELEVDNDSPL 117
Query: 1296 MLKGMEGSTLGVWAAHG 1312
KG+ VW +HG
Sbjct: 118 -FKGLPEEQD-VWMSHG 132
>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 397
Score = 30.2 bits (68), Expect = 7.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 920 ITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFE 978
IT+T+ L++G G H + G R +G + A+VF + N ++D YL+ V E
Sbjct: 24 ITRTIQNSLRMGRVG---HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification. This
group includes families ALDH18, ALDH19, and ALDH20 and
represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 30.3 bits (68), Expect = 7.4
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 1267 PSQPRFVHNESGRFECRFSSVTIEDSP--AIMLKGMEGSTL 1305
PS EC+F + + + A M+ G
Sbjct: 286 PSFDDEALESMTPLECQFRVLDVISAVENAWMIIESGGGPH 326
>gnl|CDD|197226 cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of
uncharacterized phospholipase D-like proteins. Putative
catalytic domain, repeat 2, of uncharacterized
phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD
enzymes hydrolyze phospholipid phosphodiester bonds to
yield phosphatidic acid and a free polar head group.
They can also catalyze transphosphatidylation of
phospholipids to acceptor alcohols. Members of this
subfamily contain two HKD motifs (H-x-K-x(4)-D, where x
represents any amino acid residue) that characterizes
the PLD superfamily. The two motifs may be part of the
active site and may be involved in phosphatidyl group
transfer.
Length = 142
Score = 29.2 bits (66), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 278 NQEMGLAFDEQD-LQYYTRLFKED 300
N+E+GL FD+ + Y +F+ D
Sbjct: 118 NREVGLIFDDPEVAAYLQAVFESD 141
>gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein. This family
consists of Glycine cleavage system P-proteins
EC:1.4.4.2 from bacterial, mammalian and plant sources.
The P protein is part of the glycine decarboxylase
multienzyme complex EC:2.1.2.10 (GDC) also annotated as
glycine cleavage system or glycine synthase. GDC
consists of four proteins P, H, L and T. The reaction
catalyzed by this protein is:- Glycine + lipoylprotein
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length = 429
Score = 30.4 bits (69), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 860 LDGEGAAMYDAATALAEAM 878
LD A++ D TA AEAM
Sbjct: 125 LDVANASLLDEGTAAAEAM 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0862 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 71,990,270
Number of extensions: 7233527
Number of successful extensions: 6367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6206
Number of HSP's successfully gapped: 81
Length of query: 1414
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1305
Effective length of database: 6,103,016
Effective search space: 7964435880
Effective search space used: 7964435880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.6 bits)