RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000571
(1414 letters)
>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 262
Score = 297 bits (762), Expect = 1e-92
Identities = 124/274 (45%), Positives = 168/274 (61%), Gaps = 14/274 (5%)
Query: 1139 MNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGG 1198
+ ++PKVAV+RE+G N EM+AAF+ AGF+ DV MSDL+ G I L F +V GG
Sbjct: 1 IATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGG 60
Query: 1199 FSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVG 1258
FSY DVL + +GW+ SI FN + ++F+ F+ RP T +LGVCNGCQ+M+ L +
Sbjct: 61 FSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIP---- 116
Query: 1259 GVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYF 1318
G PRFV N S RFE RFS V + SP+++L+GM GS + + +HGEGR
Sbjct: 117 ------GSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEV 170
Query: 1319 PDDGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPER 1378
DD L + L +RY D+ G TE YP N NGSP G+ A+ + +GR MMPHPER
Sbjct: 171 RDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPER 230
Query: 1379 CFLMWQYPWYPKNWNVDKKGPSPWLKMFQNAREW 1412
F W+P+NW D SPW+++F+NAR+
Sbjct: 231 VFRTVANSWHPENWGED----SPWMRIFRNARKQ 260
>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 209
Score = 207 bits (527), Expect = 1e-61
Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 6/211 (2%)
Query: 326 FTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQ 385
F +IDGKP ++L +++K+T + P+ + +KDN++ ++G V R + +
Sbjct: 2 FNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVG--RYFADHNTGR 59
Query: 386 LSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGN 445
+ +L ETHN P A++P+PGA TG+GG IRD ATGRG+ A G+ V N
Sbjct: 60 YDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSN 119
Query: 446 LNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPS 505
L + G PWE+ F P + + L I+ + G + + N+FG P + GY RT+ ++ S
Sbjct: 120 LRIPGFEQPWEED-FGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNS 178
Query: 506 ---GQRREWLKPIMFSGGIGQIDHNHISKGE 533
+ R + KPIM +GGIG I +H+ KGE
Sbjct: 179 HNGEELRGYHKPIMLAGGIGNIRADHVQKGE 209
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 200
Score = 159 bits (403), Expect = 4e-45
Identities = 84/194 (43%), Positives = 114/194 (58%), Gaps = 6/194 (3%)
Query: 737 EPLDIAPGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAV 796
+ L+ A IT+ D++KRVL LP+V K FL T DR VTG+VA+ Q VGP Q+ +AD AV
Sbjct: 8 DALNRA-DITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAV 66
Query: 797 IAQTYTDLTGGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMY 856
+ G A +IGE+ LL+ A ARLAVGEALTN+ ++ + +K S NWM
Sbjct: 67 TTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMA 126
Query: 857 AAKLDGEGAAMYDAATALA-EAMIELGIAIDGGKDSLSMAA----YSGGEVVKAPGSLVI 911
AA GE A +YDA A+ E +LG+ I GKDS+SM + + +P SLVI
Sbjct: 127 AAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVI 186
Query: 912 SVYVTCPDITKTVT 925
S + D+ T+T
Sbjct: 187 SAFARVEDVRHTLT 200
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module,
C1 and C2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 187
Score = 158 bits (400), Expect = 9e-45
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 13/195 (6%)
Query: 536 IGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEM 595
+G ++ +GGPA IG+GGGAASSM SGQ+DADLDF +VQR + EM ++ V+ C ++
Sbjct: 3 VGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQL 62
Query: 596 GETNPIISIHDQGAGGNCNVVKEIIYP--KGAEIDIRAIIVGDHTLSVLEIWGAEYQEQD 653
G+ NPI+ IHD GAGG N + E++ +G + ++R I+ + +S LEIW E QE+
Sbjct: 63 GDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERY 122
Query: 654 AVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDL 713
+ V + L +C+RER AVIG + E + L D+ + +DL
Sbjct: 123 VLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQP-----------IDL 171
Query: 714 ELERVLGDMPQKTFE 728
L+ +LG P+ T +
Sbjct: 172 PLDVLLGKTPKMTRD 186
Score = 38.8 bits (90), Expect = 0.002
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%)
Query: 973 LKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNS-----EGNSLF 1027
+ V + L + HD+ GGL E+ G G +L G S
Sbjct: 52 CQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPL 111
Query: 1028 QTLFAE-ELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVD 1077
+ E + VL V+ L + +IG + + +
Sbjct: 112 EIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDN 162
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module,
C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Length = 217
Score = 155 bits (392), Expect = 2e-43
Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 5/211 (2%)
Query: 926 PDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIG 985
P L +D LL IDL KG LG +ALAQV+ Q+G++ D+ DV LK ++ +Q L+
Sbjct: 1 PQLST-EDNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVA 59
Query: 986 DELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSN 1045
+ HD SDGGLLV EM+FAG+ G+ +D+ + G+ LF EELG V++V +
Sbjct: 60 ARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDDHLAALFNEELGGVIQVRAED 119
Query: 1046 LDTVSKKLHDAGVSAEI--IGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKF 1103
D V L G++ + +GQ + I + T +E + LR W ET++++++
Sbjct: 120 RDAVEALLAQYGLADCVHYLGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRL 179
Query: 1104 QRLASCVESEKEGLKSRCEPLW--KLSFTPS 1132
+ C + E E + +P KLSF +
Sbjct: 180 RDNPQCADQEHEAKANDTDPGLNVKLSFDIN 210
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 152
Score = 105 bits (262), Expect = 1e-26
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 100 PLLQDSAAAELLKSVQKKISNQIVGLKTEHCFNIGLDSRISTKKLEVLKWLLQETYEPEN 159
P L +LL Q + Q+ + E+ L++ ++ + L LLQ +
Sbjct: 9 PALSAFRINKLLARFQA-ANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSS 67
Query: 160 LGTESFLEKKKQKGLKAVIVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLERSRRYLLF 219
L + V PR + WS+ A I CGL +V RLER Y
Sbjct: 68 HTPAGKL------------LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAY-YI 114
Query: 220 SKGALQDNQINDFAAMVHDRMTECVYTE 247
L Q AA +HDRM E V++
Sbjct: 115 EASTLTAEQWRQVAAELHDRMMETVFSS 142
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 68
Score = 101 bits (253), Expect = 2e-26
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 258 PEEVRFVPVMENGRKALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSN 317
P V V ++ GR+AL + N +GLA E ++ Y F + RNP +EL+ AQ+N
Sbjct: 3 PAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFT-KLGRNPNDIELYMFAQAN 61
Query: 318 SEHSRH 323
SEH RH
Sbjct: 62 SEHCRH 67
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 165
Score = 102 bits (256), Expect = 1e-25
Identities = 49/239 (20%), Positives = 72/239 (30%), Gaps = 78/239 (32%)
Query: 293 YTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKSTLQAN 352
Y + KE + R PT VEL + SEH + K ++
Sbjct: 4 YLNILKEKLGREPTFVELQAFSVMWSEHCGYSHT-------------------KKYIRRL 44
Query: 353 PNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAPYP 412
P GF+ N+ + V F E+HN P A+ PY
Sbjct: 45 PKT---GFEGNAGVVNLDDYYS--------------------VAFKIESHNHPSAIEPYN 81
Query: 413 GAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQI 472
GA TG GG IRD A G + + +I
Sbjct: 82 GAATGVGGIIRDVLAMGARPTAIFDSLHMS----------------------------RI 113
Query: 473 LIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHISK 531
+ G +DYGN G P + G R P++ G + ++ +
Sbjct: 114 IDGIIEGIADYGNSIGVPTVGGELRIS--------SLYAHNPLVNVLAAGVVRNDMLVD 164
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 179
Score = 82.2 bits (202), Expect = 2e-18
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Query: 537 GMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMG 596
G ++V GG R G+ G + +S ++Q GD + L +EM
Sbjct: 6 GQVIVIFGGATGRDGIHGASFAS--EDLTGDKATKLSIQVGDPFAEKMLIEA---FLEMV 60
Query: 597 ETNPIISIHDQGAGGNCNVVKEIIYPKG--AEIDIRAIIVGDHTLSVLEIWGAEYQEQDA 654
E + D GAGG + E++ A + + + + + + EI +E QE+ A
Sbjct: 61 EEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMA 120
Query: 655 VLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVD 692
V+ P+ + I + + V+ + E ++
Sbjct: 121 VVTSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMY 158
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 35.0 bits (80), Expect = 0.041
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 13/120 (10%)
Query: 1185 ISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQ 1244
E ++ GGF A L + + ++ L Q ++ +C
Sbjct: 81 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQA-GKPLGFMCIAPA 139
Query: 1245 LMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECR--FSSVTIED-----SPAIML 1297
++ + G D + V ED +PA ML
Sbjct: 140 MLPKIF-----DFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYML 194
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 162
Score = 33.5 bits (76), Expect = 0.073
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 808 ACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAM 867
+ + L + +AV E++ + + N+ +
Sbjct: 56 SLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEP-LAITNCVNYGDPDVDPVG---L 111
Query: 868 YDAATALAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAP 906
TAL A G+ + G SL Y G +
Sbjct: 112 SAMMTALKNACEFSGVPVASGNASLYN-TYQGKPIPPTL 149
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 87
Score = 31.9 bits (73), Expect = 0.075
Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 295 RLFKEDIKRNPTTVELFDIAQS---------NSEHSRHWF-FTGKIVIDGKPMVRTLMQI 344
++ +E P+ ++ + + + R + G + +D K L++
Sbjct: 19 KVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKE 78
Query: 345 VKSTLQA 351
+ ++
Sbjct: 79 ICKIIKG 85
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 32.2 bits (72), Expect = 0.43
Identities = 33/225 (14%), Positives = 56/225 (24%), Gaps = 38/225 (16%)
Query: 1164 AFYAAGFE----PWDVTMSDLINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQ 1219
+AG D+T D GI+F GG D AK A I +N
Sbjct: 33 YLESAGARVVPVRLDLTEKDYEI---LFKSINGILFPGGSVDLRRSDYAK--VAKIFYNL 87
Query: 1220 PLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGR 1279
+ + Y G C G + ++L I G + F +
Sbjct: 88 SIQSFDDGDYFP----VWGTCLGFEELSL--LISGECLLTATDTVDVAMPLNFTGGQLHS 141
Query: 1280 FECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCD 1339
+ + S A+ + +
Sbjct: 142 RMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKF------------------ 183
Query: 1340 DDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQ 1384
V N +G ++ + + HPE+ W+
Sbjct: 184 -----FNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWK 223
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex
aeolicus [TaxId: 63363]}
Length = 182
Score = 31.1 bits (69), Expect = 0.52
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 1033 EELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEI 1074
GL+ ++K L+ + + + V+ IIG+ + + +E+
Sbjct: 140 TSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEV 181
Score = 27.7 bits (60), Expect = 7.5
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 4/118 (3%)
Query: 578 DAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPKGAEIDIRAIIVGDH 637
D L C I + N+VK+ IYPKGA ++ +
Sbjct: 65 DVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLK 124
Query: 638 TLS----VLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLV 691
+ ++ + + E + + + V+ +IG E + ++
Sbjct: 125 SNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL 182
>d2msba_ d.169.1.1 (A:) Mannose-binding protein A, C-lectin domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 112
Score = 29.2 bits (64), Expect = 1.2
Identities = 6/53 (11%), Positives = 14/53 (26%)
Query: 1361 AICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQNAREWC 1413
A+CS +A+ + E + + + + R
Sbjct: 18 ALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTY 70
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 201
Score = 30.1 bits (68), Expect = 1.5
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 287 EQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHS-RHWFFTGKIVID 333
+D+ +L +K+ F + S+ HWF+ + +ID
Sbjct: 48 TKDIPVVHQLLTRYLKQ-------FHLTPVMSQEEVEHWFYPQENIID 88
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.9 bits (64), Expect = 2.7
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 581 MAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPKGAEIDIRAIIVGD---- 636
+A+ + + +G + + D G V+E P ++V D
Sbjct: 50 IARFIAEFEGKEVPVGVLDITLYRDDLTEIGYRPQVRETRIPFDLT-GKAIVLVDDVLYT 108
Query: 637 -----HTLSVLEIWGAEYQEQDAVLVKPESRDL 664
L L G + AVLV R+L
Sbjct: 109 GRTARAALDALIDLGRPRRIYLAVLVDRGHREL 141
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 29.1 bits (64), Expect = 3.5
Identities = 6/69 (8%), Positives = 12/69 (17%), Gaps = 15/69 (21%)
Query: 1361 AICSPDGRHL--------AMMPHPERCFLMWQYPWYPKNWN-----VDKKGPSPW--LKM 1405
+ + G+ L E S W ++
Sbjct: 73 EVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQA 132
Query: 1406 FQNAREWCS 1414
W +
Sbjct: 133 SGCLWTWGN 141
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 3.6
Identities = 19/112 (16%), Positives = 42/112 (37%)
Query: 192 SANAVSICRVCGLTEVTRLERSRRYLLFSKGALQDNQINDFAAMVHDRMTECVYTEKLTS 251
+A + + E+ LER + L + AL+ + D + E + +
Sbjct: 240 AAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIA 299
Query: 252 FETSVVPEEVRFVPVMENGRKALEEINQEMGLAFDEQDLQYYTRLFKEDIKR 303
+ E + + + L+E+ +E+ LA + DL L ++ +
Sbjct: 300 KLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPK 351
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.4 bits (64), Expect = 3.8
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 1320 DDGVLDRILHSHLAPVRYCDD---DGNPTEVYPFNVNGSPLGVAAIC-SPDGRHLAMMPH 1375
+ + R DD + +P + + S L + ++C SPDG+ LA
Sbjct: 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141
Query: 1376 PERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQNAREWC 1413
+ + L F + +
Sbjct: 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP
{Ectothiorhodospira halophila [TaxId: 1053]}
Length = 125
Score = 28.0 bits (61), Expect = 3.8
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 2/57 (3%)
Query: 1352 VNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQN 1408
++G G + DG L KN+ P F
Sbjct: 23 LDGLAFGAIQLD-GDGNILQYNAAEGDITGRDPKQVIGKNF-FKDVAPCTDSPEFYG 77
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 350
Score = 28.2 bits (62), Expect = 8.5
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 9/71 (12%)
Query: 1344 PTEVYPFNVNGSPLG------VAAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKK 1397
T+ FN +A G + L W++ P + D
Sbjct: 130 GTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYYSG---GLDWRFTTEPIRYPEDLS 186
Query: 1398 GPSPWLKMFQN 1408
P + +
Sbjct: 187 YIRPNTYEYAD 197
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,241,313
Number of extensions: 251427
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 26
Length of query: 1414
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1317
Effective length of database: 1,075,786
Effective search space: 1416810162
Effective search space used: 1416810162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)