BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000572
(1414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1252 (37%), Positives = 688/1252 (54%), Gaps = 51/1252 (4%)
Query: 178 IVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLERSRRYLLFSKGALQDNQINDFAAMVH 237
++ V PR + WS+ A I CGL +V RLER Y + L Q AA +H
Sbjct: 82 LLLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYI-EASTLTAEQWRQVAAELH 140
Query: 238 DRMTECVYTEKLTSFETSVV---PEEVRFVPVMENGRKALEEINQEMGLAFDEQDLQYYT 294
DRM E V++ LT E + P V V ++ GR+AL + N +GLA E ++ Y
Sbjct: 141 DRMMETVFS-SLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQ 199
Query: 295 RLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPN 354
F + + RNP +EL+ AQ+NSEH RH F +IDGKP ++L +++K+T + P+
Sbjct: 200 EAFTK-LGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKMIKNTFETTPD 258
Query: 355 NSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAPYPGA 414
+ +KDN++ ++G V + R + + +L ETHN P A++P+PGA
Sbjct: 259 YVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQ--EPAHILMKVETHNHPTAISPWPGA 316
Query: 415 ETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQILI 474
TG+GG IRD ATGRG+ A G+ V NL + G PWE+ F P + + L I+
Sbjct: 317 ATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEE-DFGKPERIVTALDIMT 375
Query: 475 DASNGASDYGNKFGEPLIQGYTRTFGMRLPSG---QRREWLKPIMFSGGIGQIDHNHISK 531
+ G + + N+FG P + GY RT+ ++ S + R + KPIM +GGIG I +H+ K
Sbjct: 376 EGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQK 435
Query: 532 GEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAVQRGDAEMAQKLYRVVRA 591
GE +G ++ +GGPA I Q+DADLDF +VQR + EM ++ V+
Sbjct: 436 GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDR 495
Query: 592 CIEMGETNPIISIHDQGAGGNCNVVKEIIYP--KGAEIDIRAIIVGDHTLSVLEIWGAEY 649
C ++G+ NPI+ IHD GAGG N + E++ +G + ++R I+ + +S LEIW E
Sbjct: 496 CWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNES 555
Query: 650 QEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPP 709
QE+ + V + L +C+RER AVIG + E + L D+ +
Sbjct: 556 QERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQ----------- 604
Query: 710 AVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLTTK 769
+DL L+ +LG P+ T + + L+ A IT+ D++KRVL LP+V K FL T
Sbjct: 605 PIDLPLDVLLGKTPKMTRDVQTLKAKGDALNRA-DITIADAVKRVLHLPTVAEKTFLVTI 663
Query: 770 VDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMARLA 829
DR VTG+VA+ Q VGP Q+ +AD AV + G A +IGE+ LL+ A ARLA
Sbjct: 664 GDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLA 723
Query: 830 VGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDAATALAEAMI-ELGIAIDGG 888
VGEALTN+ ++ + +K S NWM AA GE A +YDA A+ E + +LG+ I G
Sbjct: 724 VGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVG 783
Query: 889 KDSLSMAA--YSGGEV--VKAPGSLVISVYVTCPDITKTVTPXXXXXXXXXXXXXXXAKG 944
KDS+SM G E + +P SLVIS + D+ T+TP KG
Sbjct: 784 KDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDL-GKG 842
Query: 945 KRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCT 1004
LG +ALAQV+ Q+G++ D+ DV LK ++ +Q L+ + HD SDGGLLV
Sbjct: 843 HNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTL 902
Query: 1005 LEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVS--AEI 1062
EM+FAG+ G+ +D+ + G+ LF EELG V++V + D V L G++
Sbjct: 903 AEMAFAGHCGVQVDIAALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHY 962
Query: 1063 IGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASCVESEKEGLKSRCE 1122
+GQ + I + T +E + LR W ET++++++ + C + E E + +
Sbjct: 963 LGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTD 1022
Query: 1123 PLWKLSFTPSLTDE---KYMNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSD 1179
P + + + ++ Y+ ++PKVAV+RE+G N EM+AAF+ AGF+ DV MSD
Sbjct: 1023 PGLNVKLSFDINEDIAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSD 1082
Query: 1180 LINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGV 1239
L+ G I L F +V GGFSY DVL + +GW+ SI FN + ++F+ F+ RP T +LGV
Sbjct: 1083 LLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGV 1142
Query: 1240 CNGCQLMALLGWIXXXXXXXXXXXXXDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKG 1299
CNGCQ+M+ L + PRFV N S RFE RFS V + SP+++L+G
Sbjct: 1143 CNGCQMMSNLRELIPGSEL----------WPRFVRNHSDRFEARFSLVEVTQSPSLLLQG 1192
Query: 1300 MEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGV 1359
M GS + + +HGEGR DD L + L +RY D+ G TE YP N NGSP G+
Sbjct: 1193 MVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGI 1252
Query: 1360 AAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQNARE 1411
A+ + +GR MMPHPER F W+P+NW D SPW+++F+NAR+
Sbjct: 1253 TAVTTENGRVTIMMPHPERVFRTVANSWHPENWGED----SPWMRIFRNARK 1300
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1252 (37%), Positives = 687/1252 (54%), Gaps = 51/1252 (4%)
Query: 178 IVEVGPRLSFTTAWSANAVSICRVCGLTEVTRLERSRRYLLFSKGALQDNQINDFAAMVH 237
++ V PR + WS+ A I CGL +V RLER Y + L Q AA +H
Sbjct: 82 LLLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYI-EASTLTAEQWRQVAAELH 140
Query: 238 DRMTECVYTEKLTSFETSVV---PEEVRFVPVMENGRKALEEINQEMGLAFDEQDLQYYT 294
DRM E V++ LT E + P V V ++ GR+AL + N +GLA E ++ Y
Sbjct: 141 DRMMETVFS-SLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQ 199
Query: 295 RLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPN 354
F + + RNP +EL+ AQ+NSEH RH F +IDGKP ++L +++K+T + P+
Sbjct: 200 EAFTK-LGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKMIKNTFETTPD 258
Query: 355 NSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLDVLFTAETHNFPCAVAPYPGA 414
+ +KDN++ ++G V + R + + +L ETHN P A++P+PGA
Sbjct: 259 YVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQ--EPAHILMKVETHNHPTAISPWPGA 316
Query: 415 ETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQILI 474
TG+GG IRD ATGRG+ A G+ V NL + G PWE+ F P + + L I+
Sbjct: 317 ATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEE-DFGKPERIVTALDIMT 375
Query: 475 DASNGASDYGNKFGEPLIQGYTRTFGMRLPSG---QRREWLKPIMFSGGIGQIDHNHISK 531
+ G + + N+FG P + GY RT+ ++ S + R + KPIM +GGIG I +H+ K
Sbjct: 376 EGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQK 435
Query: 532 GEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAVQRGDAEMAQKLYRVVRA 591
GE +G ++ +GGPA I Q+DADLDF +VQR + EM ++ V+
Sbjct: 436 GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDR 495
Query: 592 CIEMGETNPIISIHDQGAGGNCNVVKEIIYP--KGAEIDIRAIIVGDHTLSVLEIWGAEY 649
C ++G+ NPI+ IHD GAGG N + E++ +G + ++R I+ + +S LEIW E
Sbjct: 496 CWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNES 555
Query: 650 QEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPP 709
QE+ + V + L +C+RER AVIG + E + L D+ +
Sbjct: 556 QERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQ----------- 604
Query: 710 AVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLTTK 769
+DL L+ +LG P+ T + + L+ A IT+ D++KRVL LP+V K FL T
Sbjct: 605 PIDLPLDVLLGKTPKMTRDVQTLKAKGDALNRA-DITIADAVKRVLHLPTVAEKTFLVTI 663
Query: 770 VDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMARLA 829
DR VTG+VA+ Q VGP Q+ +AD AV + G A +IGE+ LL+ A ARLA
Sbjct: 664 GDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLA 723
Query: 830 VGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDAATALAEAMI-ELGIAIDGG 888
VGEALTN+ ++ + +K S NWM AA GE A +YDA A+ E + +LG+ I G
Sbjct: 724 VGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVG 783
Query: 889 KDSLSMAA--YSGGEV--VKAPGSLVISVYVTCPDITKTVTPXXXXXXXXXXXXXXXAKG 944
KDS+SM G E + +P SLVIS + D+ T+TP KG
Sbjct: 784 KDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDL-GKG 842
Query: 945 KRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCT 1004
LG +ALAQV+ Q+G++ D+ DV LK ++ +Q L+ + HD SDGGLLV
Sbjct: 843 HNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTL 902
Query: 1005 LEMSFAGNYGITLDLNSEGNSLFQTLFAEELGLVLEVSKSNLDTVSKKLHDAGVS--AEI 1062
EM+FAG+ G+ +D+ + G+ LF EELG V++V + D V L G++
Sbjct: 903 AEMAFAGHCGVQVDIAALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHY 962
Query: 1063 IGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASCVESEKEGLKSRCE 1122
+GQ + I + T +E + LR W ET++++++ + C + E E + +
Sbjct: 963 LGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTD 1022
Query: 1123 PLWKLSFTPSLTDE---KYMNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSD 1179
P + + + ++ Y+ ++PKVAV+RE+G N EM+AAF+ AGF+ DV MSD
Sbjct: 1023 PGLNVKLSFDINEDIAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSD 1082
Query: 1180 LINGAISLDEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGV 1239
L+ G I L F +V GGFSY DVL + +GW+ SI FN + ++F+ F+ RP T +LGV
Sbjct: 1083 LLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGV 1142
Query: 1240 CNGCQLMALLGWIXXXXXXXXXXXXXDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKG 1299
NGCQ+M+ L + PRFV N S RFE RFS V + SP+++L+G
Sbjct: 1143 XNGCQMMSNLRELIPGSEL----------WPRFVRNHSDRFEARFSLVEVTQSPSLLLQG 1192
Query: 1300 MEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGV 1359
M GS + + +HGEGR DD L + L +RY D+ G TE YP N NGSP G+
Sbjct: 1193 MVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGI 1252
Query: 1360 AAICSPDGRHLAMMPHPERCFLMWQYPWYPKNWNVDKKGPSPWLKMFQNARE 1411
A+ + +GR MMPHPER F W+P+NW D SPW+++F+NAR+
Sbjct: 1253 TAVTTENGRVTIMMPHPERVFRTVANSWHPENWGED----SPWMRIFRNARK 1300
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 158/717 (22%), Positives = 276/717 (38%), Gaps = 78/717 (10%)
Query: 360 FKDNSSAIKGFPVKQLRPVQ-PGSRCQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGA 418
+K++ +K P + +Q PG + + V F E+HN P AV P+ GA TG
Sbjct: 44 YKNSRPLLKALPKEGEAVLQGPGENAGVVRVGEGWAVAFKIESHNHPSAVEPFQGAATGV 103
Query: 419 GGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPLQILIDASN 478
GG +RD + G + + + P E+ Y +L +
Sbjct: 104 GGILRDIXSXGARPIALLDSL-----------RFGPPEEARSRY---------LLKGVVS 143
Query: 479 GASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDHNHISKGEPDIGM 538
G + YGN G P + G + G R P++ + +G + H+ + +G
Sbjct: 144 GIAFYGNAIGVPTVGG-----DLYFHEGYRE---NPLVNAXCLGLLREEHLKRSRASLGR 195
Query: 539 LVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGET 598
+ G R + A+ D AVQ GD + + L A +E E
Sbjct: 196 PIYYAGAKTGRDGIGGAAFASRELKEEKAE-DRPAVQVGDPFLGKLL---XEATLEAIEL 251
Query: 599 NPIISIHDQGAGGNCNVVKEIIYPKG--AEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVL 656
+ + + D GA G + + E+ + G E+ + + + + E+ +E QE+ ++
Sbjct: 252 DLVEGVQDXGAAGLTSSLSELAHKSGLGVELHLDLVPTREEGXTPEELLLSESQERXVLV 311
Query: 657 VKPESRDLLQSICERERVS-MAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDLEL 715
K L+ + R + + V TI VL V + + L P V +
Sbjct: 312 PKEGKEKALEEVFGRWGLDCVPVARTIPERVFRVLFRGEVVAEVPTEALAEAPTYVRVGR 371
Query: 716 E----RVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLTTKVD 771
E R L + P PL+ P + L+R+L P++ S+ + + D
Sbjct: 372 EDPEVRRLRETPIP------------PLEADP----QEVLRRLLASPNLASREAVYERYD 415
Query: 772 RCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMARLAVG 831
V A G D AV+ T L G A + + P L+P+ A A+
Sbjct: 416 HQVGTRTALLPGKG-------DAAVLWIKGTRL-GVAAKVDQNPRYSRLHPRLGAXHALA 467
Query: 832 EALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDAATALAEAMIELGIAIDGGKDS 891
EA N+ L++ G + + + + + L EA LG+ + G +
Sbjct: 468 EACRNVSVVGAKPLAYT--DGLNLGSPETPEGYHELAETIAGLKEASEALGVPVVSG--N 523
Query: 892 LSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPXXXXXXXXXXXXXXXAKGKRRLGGS 951
+S+ SGG+ + + + + ++ K + + LG S
Sbjct: 524 VSLYNESGGKRIPPTAXVGVVGVL---EVDKRAE---XGFRRPGEVLLLIGEERGELGAS 577
Query: 952 ALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAG 1011
+ + P D+ K V E ++DLI L T HD+++GGLL+ E +F
Sbjct: 578 EVLYLLTGKEFGHPPRLDLGREKAVQEAIRDLIQRGLTRTAHDVAEGGLLLALAEXTFPY 637
Query: 1012 NYGITLDLNSEGNSLFQTLFAEELGLVL-EVSKSNLDTVSKKLHDAGVSAEIIGQVN 1067
G T+++ EG + LF E VL V K+ L + L + G+ ++G+
Sbjct: 638 GVGATVEVREEG---LEALFGEAPSRVLFTVEKTRLQEATLLLEERGLPYRVLGETG 691
>pdb|3D54|D Chain D, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|H Chain H, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|L Chain L, Stucture Of Purlqs From Thermotoga Maritima
Length = 213
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 49/237 (20%)
Query: 1144 KPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYAD 1203
KP+ V+ GSN DR+ A GFEP V + D LD++ I+ GGFSY D
Sbjct: 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD------KLDDYELIILPGGFSYGD 55
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIXXXXXXXXXXX 1263
L ++ + + + + +R +G+ NG Q++ +G +
Sbjct: 56 YL-----RPGAVAAREKIAFEIAKAAER-GKLIMGIXNGFQILIEMGLL----------- 98
Query: 1264 XXDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDDG 1322
+ + N SG+F C++ + +E++ E G + + AHG GR DD
Sbjct: 99 -----KGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYVKIDD- 152
Query: 1323 VLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERC 1379
++ +L RY D VNGS +A + + G +MPHPER
Sbjct: 153 -VNVVL-------RYVKD-----------VNGSDERIAGVLNESGNVFGLMPHPERA 190
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 112/279 (40%), Gaps = 42/279 (15%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
V F E+HN P A+ PY GA TG GG IRD A G
Sbjct: 91 VAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMG------------------------- 125
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
P+ + S S +I+ G +DYGN G P + G +R+ S L
Sbjct: 126 -ARPTAIFDSLHMS--RIIDGIIEGIADYGNSIGVPTVGGE-----LRISSLYAHNPLVN 177
Query: 515 IMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAV 574
++ + G+ + D SK G ++V GG R + A ++
Sbjct: 178 VL-AAGVVRNDMLVDSKASRP-GQVIVIFGGATGRDGIHGASFASEDLTGDKATK--LSI 233
Query: 575 QRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAI 632
Q GD A+K+ ++ A +EM E + D GAGG + E++ GA + + +
Sbjct: 234 QVGDP-FAEKM--LIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRV 290
Query: 633 IVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICER 671
+ + + EI +E QE+ AV+ P+ + I +
Sbjct: 291 PLREPDMEPWEILISESQERMAVVTSPQKASRILEIARK 329
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 112/279 (40%), Gaps = 42/279 (15%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
V F E+HN P A+ PY GA TG GG IRD A G
Sbjct: 65 VAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMG------------------------- 99
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
P+ + S S +I+ G +DYGN G P + G +R+ S L
Sbjct: 100 -ARPTAIFDSLHMS--RIIDGIIEGIADYGNSIGVPTVGGE-----LRISSLYAHNPLVN 151
Query: 515 IMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAV 574
++ + G+ + D SK G ++V GG R + A ++
Sbjct: 152 VL-AAGVVRNDMLVDSKASRP-GQVIVIFGGATGRDGIHGASFASEDLTGDKATK--LSI 207
Query: 575 QRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAI 632
Q GD A+K+ ++ A +EM E + D GAGG + E++ GA + + +
Sbjct: 208 QVGDP-FAEKM--LIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRV 264
Query: 633 IVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICER 671
+ + + EI +E QE+ AV+ P+ + I +
Sbjct: 265 PLREPDMEPWEILISESQERMAVVTSPQKASRILEIARK 303
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 111/279 (39%), Gaps = 42/279 (15%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
V F E+ N P A+ PY GA TG GG IRD A G
Sbjct: 65 VAFKIESANHPSAIEPYNGAATGVGGIIRDVLAMG------------------------- 99
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
P+ + S S +I+ G +DYGN G P + G +R+ S L
Sbjct: 100 -ARPTAIFDSLHMS--RIIDGIIEGIADYGNSIGVPTVGGE-----LRISSLYAHNPLVN 151
Query: 515 IMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAV 574
++ + G+ + D SK G ++V GG R + A ++
Sbjct: 152 VL-AAGVVRNDMLVDSKASRP-GQVIVIFGGATGRDGIHGASFASEDLTGDKATK--LSI 207
Query: 575 QRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAI 632
Q GD A+K+ ++ A +EM E + D GAGG + E++ GA + + +
Sbjct: 208 QVGDP-FAEKM--LIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRV 264
Query: 633 IVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICER 671
+ + + EI +E QE+ AV+ P+ + I +
Sbjct: 265 PLREPDMEPWEILISESQERMAVVTSPQKASRILEIARK 303
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 106/279 (37%), Gaps = 42/279 (15%)
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
V F E+HN P A+ PY GA TG GG IRD A G
Sbjct: 77 VAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAXG------------------------- 111
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
P+ + S S +I+ G +DYGN G P + G +R+ S L
Sbjct: 112 -ARPTAIFDSLHXS--RIIDGIIEGIADYGNSIGVPTVGGE-----LRISSLYAHNPLVN 163
Query: 515 IMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIXXXXXXXXXXXXXQNDADLDFNAV 574
++ +G + P G ++V GG R + A ++
Sbjct: 164 VLAAGVVRNDXLVDSKASRP--GQVIVIFGGATGRDGIHGASFASEDLTGDKATK--LSI 219
Query: 575 QRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIYPK--GAEIDIRAI 632
Q GD A+K ++ A +E E + D GAGG + E++ GA + + +
Sbjct: 220 QVGDP-FAEK--XLIEAFLEXVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRV 276
Query: 633 IVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICER 671
+ + EI +E QE+ AV+ P+ + I +
Sbjct: 277 PLREPDXEPWEILISESQERXAVVTSPQKASRILEIARK 315
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From
Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase From
Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase From
Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1084 EKTSLLRDMWEETSFELEKFQRLASCVESEKEGLKSRCEPLW--KLSFTPSLTDEKYMNA 1141
E T++ R W+E E + F +L S +E+ + + S+ P W +F PS D +++A
Sbjct: 96 EWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA 155
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1139 MNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMS 1178
+ T P V V R E S G+ ++ A+GF PW++T+S
Sbjct: 178 LRRTVPPMVNVTRSEASEGN--ITVTCRASGFYPWNITLS 215
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1139 MNATSKPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMS 1178
+ T P V V R E S G+ ++ A+GF PW++T+S
Sbjct: 179 LRRTVPPMVNVTRSEASEGN--ITVTCRASGFYPWNITLS 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,851,856
Number of Sequences: 62578
Number of extensions: 1760817
Number of successful extensions: 4311
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4250
Number of HSP's gapped (non-prelim): 31
length of query: 1414
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1303
effective length of database: 8,027,179
effective search space: 10459414237
effective search space used: 10459414237
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)