RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 000574
(1414 letters)
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 1490 bits (3858), Expect = 0.0
Identities = 496/1347 (36%), Positives = 727/1347 (53%), Gaps = 64/1347 (4%)
Query: 85 LSEKPAQEVVHFYRIPLLQDSAAAELLKSVQKKISNQIVGLKTEHCFNIGLDSRISTKKL 144
L + + + P L +LL Q + Q+ + E+ L++ ++ +
Sbjct: 2 LVPRGSHMMEILRGSPALSAFRINKLLARFQA-ANLQVHNIYAEYVHFADLNAPLNDSEQ 60
Query: 145 EVLKWLLQETYEPENLGTESFLEKKKQKGLKAVIVEVGPRLSFTTAWSANAVSICRVCGL 204
L LL Y P ++ V PR + WS+ A I CGL
Sbjct: 61 AQLTRLL--QYGPALSSHTP----------AGKLLLVTPRPGTISPWSSKATDIAHNCGL 108
Query: 205 TEVTRLERSRRYLLFSKGALQDNQINDFAAMVHDRMTECVYT--EKLTSFETSVVPEEVR 262
+V RLER Y L Q AA +HDRM E V++ P V
Sbjct: 109 QQVDRLERGVAYY-IEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVS 167
Query: 263 FVPVMENGRKALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSR 322
V ++ GR+AL + N +GLA E ++ Y F + + RNP +EL+ AQ+NSEH R
Sbjct: 168 SVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTK-LGRNPNDIELYMFAQANSEHCR 226
Query: 323 HWFFTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGS 382
H F +IDGKP ++L +++K+T + P+ + +KDN++ ++G V +
Sbjct: 227 HKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTG 286
Query: 383 RCQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYC 442
R + + +L ETHN P A++P+PGA TG+GG IRD ATGRG+ A G+
Sbjct: 287 RYDFHQ--EPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFS 344
Query: 443 VGNLNVEGSYAPWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMR 502
V NL + G PWE+ F P + + L I+ + G + + N+FG P + GY RT+ +
Sbjct: 345 VSNLRIPGFEQPWEED-FGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEK 403
Query: 503 LPSGQ---RREWLKPIMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASS 559
+ S R + KPIM +GGIG I +H+ KGE +G ++ +GGPA IG+GGGAASS
Sbjct: 404 VNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGGGAASS 463
Query: 560 MVSGQNDADLDFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEI 619
M SGQ+DADLDF +VQR + EM ++ V+ C ++G+ NPI+ IHD GAGG N + E+
Sbjct: 464 MASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPEL 523
Query: 620 IYPKGA--EIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMA 677
+ G + ++R I+ + +S LEIW E QE+ + V + L +C+RER A
Sbjct: 524 VSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDELCKRERAPYA 583
Query: 678 VIGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFHHADQARE 737
VIG + E + L D+ +DL L+ +LG P+ T + +
Sbjct: 584 VIGDATEEQHLSLHDN-----------HFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD 632
Query: 738 PLDIAPGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVI 797
L+ IT+ D++KRVL LP+V K FL T DR VTG+VA+ Q VGP Q+ +AD AV
Sbjct: 633 ALNR-ADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVT 691
Query: 798 AQTYTDLTGGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYA 857
+ G A +IGE+ LL+ A ARLAVGEALTN+ ++ + +K S NWM A
Sbjct: 692 TASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAA 751
Query: 858 AKLDGEGAAMYDAATALAEAM-IELGIAIDGGKDSLSMAA----YSGGEVVKAPGSLVIS 912
A GE A +YDA A+ E + +LG+ I GKDS+SM + + +P SLVIS
Sbjct: 752 AGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVIS 811
Query: 913 VYVTCPDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPY 972
+ D+ T+TP L +D LL IDL KG LG +ALAQV+ Q+G++ D+ DV
Sbjct: 812 AFARVEDVRHTLTPQLST-EDNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQ 870
Query: 973 LKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEGNSLFQTLFA 1032
LK ++ +Q L+ + HD SDGGLLV EM+FAG+ G+ +D+ + G+ LF
Sbjct: 871 LKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDDHLAALFN 930
Query: 1033 EELGLVLEVSKSNLDTVSKKLHDAGVSAEIIG--QVNSSHSVEIKVDGLTHLNEKTSLLR 1090
EELG V++V + D V L G++ + Q + I + T +E + LR
Sbjct: 931 EELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALAGDRFVITANDQTVFSESRTTLR 990
Query: 1091 DMWEETSFELEKFQRLASCVESEKEGLKSRCEPLWKLSFTPSLTDE---KYMNATSKPKV 1147
W ET++++++ + C + E E + +P + + + ++ Y+ ++PKV
Sbjct: 991 VWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDINEDIAAPYIATGARPKV 1050
Query: 1148 AVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYADVLDS 1207
AV+RE+G N EM+AAF+ AGF+ DV MSDL+ G I L F +V GGFSY DVL +
Sbjct: 1051 AVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGA 1110
Query: 1208 AKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGW-IPGPQVGGVHGAGGD 1266
+GW+ SI FN + ++F+ F+ RP T +LGVCNGCQ+M+ L IPG +
Sbjct: 1111 GEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSE---------- 1160
Query: 1267 PSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDDGVLDR 1326
PRFV N S RFE RFS V + SP+++L+GM GS + + +HGEGR DD L
Sbjct: 1161 -LWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAA 1219
Query: 1327 ILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQYP 1386
+ L +RY D+ G TE YP N NGSP G+ A+ + +GR MMPHPER F
Sbjct: 1220 LESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVFRTVANS 1279
Query: 1387 WYPKNWNVDKKGPSPWLKMFQNAREWC 1413
W+P+NW D SPW+++F+NAR+
Sbjct: 1280 WHPENWGED----SPWMRIFRNARKQL 1302
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 294 bits (754), Expect = 3e-85
Identities = 177/854 (20%), Positives = 313/854 (36%), Gaps = 167/854 (19%)
Query: 274 LEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVID 333
+E + +E+G+ E R + + R P VEL SEH +
Sbjct: 1 MEALAKEIGIPEGE------YREIVQRLGREPNRVELLLFKVMWSEHCAYKNS------- 47
Query: 334 GKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDL 393
+P+++ L + ++ LQ G +N+ ++ +
Sbjct: 48 -RPLLKALPKEGEAVLQ--------GPGENAGVVR--------------------VGEGW 78
Query: 394 DVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYA 453
V F E+HN P AV P+ GA TG GG +RD + G+ +A G
Sbjct: 79 AVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSM--GARPIALLDSLRFGPP------- 129
Query: 454 PWEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQG----YTRTFGMRLPSGQRR 509
E+ +L +G + YGN G P + G +
Sbjct: 130 --EEA---------RSRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRE--------- 169
Query: 510 EWLKPIMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADL 569
P++ + +G + H+ + +G + G R G+GG A +S + A+
Sbjct: 170 ---NPLVNAMCLGLLREEHLKRSRASLGRPIYYAGAKTGRDGIGGAAFASRELKEEKAE- 225
Query: 570 DFNAVQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIY--PKGAEI 627
D AVQ GD + KL ++ A +E E + + + D GA G + + E+ + G E+
Sbjct: 226 DRPAVQVGDPFL-GKL--LMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVEL 282
Query: 628 DIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGR 687
+ + + ++ E+ +E QE+ ++ K L+ + R + + E
Sbjct: 283 HLDLVPTREEGMTPEELLLSESQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIPERV 342
Query: 688 VVLVDSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFH---HADQAREPLDIAPG 744
++ V ++ E L + P + RE
Sbjct: 343 FRVLFRGEV-------------VAEVPTE-ALAEAPTYVRVGREDPEVRRLRETPIPPLE 388
Query: 745 ITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDL 804
+ L+R+L P++ S+ + + D V A G D AV+ T L
Sbjct: 389 ADPQEVLRRLLASPNLASREAVYERYDHQVGTRTALLPGKG-------DAAVLWIKGTRL 441
Query: 805 TGGACAIGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASG----------NW 854
G A + + P L+P+ A A+ EA N+ G N
Sbjct: 442 -GVAAKVDQNPRYSRLHPRLGAMHALAEACRNVS-----------VVGAKPLAYTDGLNL 489
Query: 855 --------MYAAKLDGEGAAMYDAATALAEAMIELGIAIDGGKDSLSMAAY--SGGEVVK 904
+ +L L EA LG+ + G SL Y SGG+ +
Sbjct: 490 GSPETPEGYH--ELAE-------TIAGLKEASEALGVPVVSGNVSL----YNESGGKRI- 535
Query: 905 APGSLVISVYVTCPDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGS-ALAQVFDQVGNE 963
P + ++ V V ++ K + + +LL + + + LG S L + +
Sbjct: 536 -PPTAMVGV-VGVLEVDKRAEMGFRRPGEVLLL---IGEERGELGASEVLYLLTGKEFGH 590
Query: 964 SPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITLDLNSEG 1023
P L D+ K V E ++DLI L T HD+++GGLL+ EM+F G T+++ EG
Sbjct: 591 PPRL-DLGREKAVQEAIRDLIQRGLTRTAHDVAEGGLLLALAEMTFPYGVGATVEVREEG 649
Query: 1024 NSLFQTLFAEELG-LVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHL 1082
+ LF E ++ V K+ L + L + G+ ++G+ + G+
Sbjct: 650 ---LEALFGEAPSRVLFTVEKTRLQEATLLLEERGLPYRVLGETGGKSLTVLTPGGVLEW 706
Query: 1083 NEKTSLLRDMWEET 1096
+ L W+
Sbjct: 707 S--LEELLSAWKAP 718
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 200 bits (510), Expect = 3e-54
Identities = 137/783 (17%), Positives = 246/783 (31%), Gaps = 178/783 (22%)
Query: 275 EEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIVIDG 334
+ + + L KE + R PT VEL + SEH +
Sbjct: 5 KIHHHHHHMKLRY-----LNIL-KEKLGREPTFVELQAFSVMWSEHCGYSHT-------- 50
Query: 335 KPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLD 394
K +R L GF+ N+ +
Sbjct: 51 KKYIRRL--------------PKTGFEGNAGVV--------------------NLDDYYS 76
Query: 395 VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAP 454
V F E+HN P A+ PY GA TG GG IRD A G + A + + ++G
Sbjct: 77 VAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMG--ARPTAIFDSLHMSRI-IDGIIE- 132
Query: 455 WEDPSFTYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGQRREWLKP 514
G +DYGN G P + G R P
Sbjct: 133 ------------------------GIADYGNSIGVPTVGGELR-ISSLYAH-------NP 160
Query: 515 IMFSGGIGQIDHNHISKGE-PDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDADLDFNA 573
++ G + ++ + + G ++V GG R G+ G + +S + A +
Sbjct: 161 LVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFASEDLTGDKATK--LS 218
Query: 574 VQRGDAEMAQKLYRVVRACIEMGETNPIISIHDQGAGGNCNVVKEIIY--PKGAEIDIRA 631
+Q GD +K+ ++ A +EM E + D GAGG + E++ GA + +
Sbjct: 219 IQVGDPFA-EKM--LIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDR 275
Query: 632 IIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGTISGEGRVVLV 691
+ + + + EI +E QE+ AV+ P+ + I + + V+ + E ++
Sbjct: 276 VPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVM 335
Query: 692 DSAAVQKCQSSGLPPPPPAVDLELERVLGDMPQKTFEFHHADQAREPLDIAPGITVMDSL 751
+ +++ ++ +L + P++ + + E +
Sbjct: 336 YRNDL-------------VMEVPVQ-LLANAPEEDIVEYTPGKIPEFKRVE--------- 372
Query: 752 KRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTV-GPLQITLADVAVIAQTYTDLTGGACA 810
+ R + + D V TV P AV+ G +
Sbjct: 373 ------FEEVNAREVFEQYDHMV-----GTDTVVPPGF----GAAVMR--IKRDGGYSLV 415
Query: 811 IGEQPIKGLLNPKAMARLAVGEALTNLVWAKVTSLSHVKASGNWMYAAKLDGEGAAMYDA 870
+ L + +AV E++ + L+ N+ +
Sbjct: 416 THSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITN-CVNYGDPDVDPVG---LSAM 471
Query: 871 ATALAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKL 930
TAL A G+ + G SL Y+ + P +LV+ + K
Sbjct: 472 MTALKNACEFSGVPVASGNASL----YNTYQGKPIPPTLVVGMLGKVNPQKVA-----KP 522
Query: 931 GDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVS 990
+ VG +LE K ++ ++ L
Sbjct: 523 KPSKVFA----------------------VGWNDFELERE---KELWRAIRKLS----EE 553
Query: 991 TGHDISDGGLLVCTLEMSFA-GNYGITLDL-NSEGNSLFQTLFAEELGLVLEVSKSNLDT 1048
+S LL T +F I + L +F+E +V V + T
Sbjct: 554 GAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVD-VPVKEIGT 612
Query: 1049 VSK 1051
+S+
Sbjct: 613 LSR 615
Score = 46.9 bits (112), Expect = 4e-05
Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 959 QVGNESPDLEDVPYL-KRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSFAGNYGITL 1017
QVG+ P+ K + E +++ + LV D+ GG+L T E+ GN G +
Sbjct: 220 QVGD--------PFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIV 271
Query: 1018 DLNS-----EGNSLFQTLFAE--ELGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSH 1070
L+ ++ L +E E + + S + + + +++ +V
Sbjct: 272 HLDRVPLREPDMEPWEILISESQER-MAVVTSPQKASRILEIARKHLLFGDVVAEVIEEP 330
Query: 1071 SVEIKVDGLTHLNEKTSLL-----RDMWEETSFELEKFQRLAS 1108
+ + LL D+ E T ++ +F+R+
Sbjct: 331 VYRVMYRNDLVMEVPVQLLANAPEEDIVEYTPGKIPEFKRVEF 373
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 132 bits (334), Expect = 5e-35
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 49/237 (20%)
Query: 1144 KPKVAVIREEGSNGDREMSAAFYAAGFEPWDVTMSDLINGAISLDEFRGIVFVGGFSYAD 1203
KP+ V+ GSN DR+ A GFEP V + D LD++ I+ GGFSY D
Sbjct: 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD------KLDDYELIILPGGFSYGD 55
Query: 1204 VLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWIPGPQVGGVHGA 1263
L ++ + + + + +R +G+CNG Q++ +G + G
Sbjct: 56 YLRPG-----AVAAREKIAFEIAKAAER-GKLIMGICNGFQILIEMGLLKGA-------- 101
Query: 1264 GGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGME-GSTLGVWAAHGEGRAYFPDDG 1322
+ N SG+F C++ + +E++ E G + + AHG GR Y D
Sbjct: 102 --------LLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGR-YVKIDD 152
Query: 1323 VLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGSPLGVAAICSPDGRHLAMMPHPERC 1379
++ +RY +VNGS +A + + G +MPHPER
Sbjct: 153 --VNVV------LRYVK-----------DVNGSDERIAGVLNESGNVFGLMPHPERA 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 6e-11
Identities = 86/556 (15%), Positives = 163/556 (29%), Gaps = 179/556 (32%)
Query: 938 HIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVP-YLKRVFETVQDLIGDELVSTGHDIS 996
H+D G+ + + VF+ ++ D +DV K + + +++ D ++ + +S
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEI--DHIIMSKDAVS 62
Query: 997 DGGLLVCTLEMS-------FAG-----NYG---------------ITLDLNSEGNSLFQT 1029
L TL F NY +T + + L+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1030 --LFA-----------------EEL----GLVLE----VSKSNLDTVSKKLHDAGVSAEI 1062
+FA EL ++++ K+ + V ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKM 180
Query: 1063 --------IGQVNSSHSVEIKVDGLTHLNEKTSLLRDMWEETSFELEKFQRLASCVESEK 1114
+ NS +V L L LL + + + + + S +
Sbjct: 181 DFKIFWLNLKNCNSPETV------LEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 1115 EGLKSRCEPLWKL-SFTPSLT------DEKYMNA---------TSKPKVAVIREEGSNGD 1158
L+ L K + L + K NA T++ K V +
Sbjct: 232 AELRR----LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAATT 286
Query: 1159 REMSAAFYAAGFEP---------W-DVTMSDL------ING-AISLDEFRGIVFVGGFSY 1201
+S ++ P + D DL N +S+ I S
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----I----AESI 337
Query: 1202 ADVLDSAKGW------------SASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALL 1249
D L + W +S+ +P ++++ + R F
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSA---------- 385
Query: 1250 GWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAIMLKGMEGSTLGVWA 1309
IP + + S V N+ ++S V K + ST+ + +
Sbjct: 386 -HIP-TILLSLIWFDVIKSDVMVVVNKL----HKYSLV---------EKQPKESTISIPS 430
Query: 1310 AHGEGRAYFPDDGVL-DRILHSHLAPVRYCDDDGNPTEV--YPFNVNGSPLGVAAICSPD 1366
+ E + ++ L I+ + P + DD P + Y S
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-------------FYSHI 477
Query: 1367 GRHLAMMPHPERCFLM 1382
G HL + HPER L
Sbjct: 478 GHHLKNIEHPERMTLF 493
Score = 56.0 bits (134), Expect = 8e-08
Identities = 54/419 (12%), Positives = 118/419 (28%), Gaps = 113/419 (26%)
Query: 17 QGTHRNTLFLNGNSAIKRKNLLWGALSNQNS--------------KFGISNR-------K 55
+ H + + L +S L + +N F +S + K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 56 SVSLKCCAQS-KPRAVVSGDKTASVDEQPNLSEK---------PAQEVVHFYRIPLLQDS 105
V+ A + ++ T + DE +L K P + + P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSI 332
Query: 106 AAAEL--------------LKSVQKKISNQIVGLKTE---HCF-NIGL---DSRISTKKL 144
A + + I + + L+ F + + + I T L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 145 EVLKWLLQETYEPENLGTE----SFLEKKKQKGLKAVIVEVGPRLSF-TTAWSANAVSIC 199
++ W + + + S +EK+ ++ ++ P + N ++
Sbjct: 393 SLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYALH 446
Query: 200 RVCGLTEVTRLERSRRYLLFSKGALQ-DNQINDFAAMVHDRMTECVYTEKLTSFETSVVP 258
R V + + D H + + E++T F +
Sbjct: 447 RSI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-H--LKNIEHPERMTLFRMVFL- 498
Query: 259 EEVRFVPVMENG-RKALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVE--LFDI-- 313
+ RF +E R N + Q L++Y K I N E + I
Sbjct: 499 -DFRF---LEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLVNAILD 550
Query: 314 ----AQSNSEHSRHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSSAIK 368
+ N S++ +++ L + ++ F++ ++
Sbjct: 551 FLPKIEENLICSKY------------------TDLLRIALM-AEDEAI--FEEAHKQVQ 588
Score = 52.9 bits (126), Expect = 8e-07
Identities = 102/747 (13%), Positives = 204/747 (27%), Gaps = 243/747 (32%)
Query: 205 TEVTRLERSRRYLLFSKGALQDNQINDFAAMVHDRMTECVYTEKLTSFETSVVP-EEVRF 263
E + + +L +D +++F +C + S++ EE+
Sbjct: 9 FETGEHQYQYKDILS---VFEDAFVDNF---------DCKDVQ---DMPKSILSKEEIDH 53
Query: 264 V---PVMENGRK----ALEEINQEMGLAFDEQDLQ--Y---YTRLFKEDIKRNPTTVELF 311
+ +G L +EM F E+ L+ Y + + E + + T ++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMY 112
Query: 312 DIAQSNSEHSRHWFFTGKIVIDGKPMVR--TLMQIVKSTLQANPNNSVI-----GF-KDN 363
+ R + V + R +++ ++ L+ P +V+ G K
Sbjct: 113 -----IEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-- 163
Query: 364 S----SAIKGFPVKQLRP-----VQPGSRC---QLSESSQDLDVLFTAETHNFPCAVAPY 411
+ + V+ + + + E Q L + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 412 PGAETGAGGRIRD--THATGRGSFVVASTAGYCVGNL-NVEGSYAPWEDP----SFTYPS 464
+R +V L NV + +F
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----------LLNV------Q-NAKAWNAF---- 262
Query: 465 NLASPLQILI---DASN----GASDYGNKFGEPLIQGYTRTFGMRL--------PSGQRR 509
NL+ +IL+ A+ + + T L P R
Sbjct: 263 NLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 510 EWLK--PIMFSGGIGQIDHNHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDA 567
E L P S I + + ++ + ++ +
Sbjct: 321 EVLTTNPRRLSI-IAESIRDGLATWDN-------------WK--------------HVNC 352
Query: 568 DLDFNAVQRGDAEMAQKLYRVVRACIEMGETNPI------ISIHDQGAGGNCNV---VKE 618
D KL ++ + + + E +S+ A ++ +
Sbjct: 353 D---------------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTILLS 393
Query: 619 IIYPKGAEIDIRAIIVGDHTLSVLEIWGAE-----YQEQDAVLVKPESRDLLQSICERER 673
+I+ + D+ ++ H S++E E + VK E+ L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----- 448
Query: 674 VSMAVIGTISGEGRVVLVDSAAVQKC-QSSGLPPPPPAVDLELERVLGDMPQKTFEF--H 730
+VD + K S L PP +D Q + H
Sbjct: 449 ----------------IVDHYNIPKTFDSDDLIPPY--LD-----------QYFYSHIGH 479
Query: 731 HADQAREPLDIAPGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIT 790
H +L R++ L RFL K+ T A G + T
Sbjct: 480 HLKNIEH--------PERMTLFRMVFL----DFRFLEQKIRHDSTAWNA----SGSILNT 523
Query: 791 LADVAVIAQTYTDLTGGACAIGEQPIKGLLN--PKAMARLAVGEALTNLVWAKVTSLSHV 848
L + + Y E+ + +L+ PK NL+ +K T L +
Sbjct: 524 LQQL----KFYKPYICDNDPKYERLVNAILDFLPKIE---------ENLICSKYTDLLRI 570
Query: 849 KASGNWMYAAKLDGEGAAMYDAATALA 875
A + + A +A +
Sbjct: 571 ---------ALMAEDEAIFEEAHKQVQ 588
Score = 43.7 bits (102), Expect = 5e-04
Identities = 40/271 (14%), Positives = 80/271 (29%), Gaps = 68/271 (25%)
Query: 92 EVVHFYR--IPLLQDSAAAEL-LKSVQ---KKISNQIVGLKTEHCFNIGLDSRISTKKLE 145
E + Y+ + + +D+ K VQ K I L E +I + S+ +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHI-IMSKDAVSGTL 65
Query: 146 VLKWLLQETYEPENLGTESFLEKKKQKG---LKAVIVEV-----GPRLSFTTA----WSA 193
L W L + E + F+E+ + L + I + ++
Sbjct: 66 RLFWTLLS--KQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 194 NAV----SICRVCGLTEVTRLE------RSRRYLL------FSKGALQDNQINDFAAMVH 237
N V ++ R L +L R + +L K + + + V
Sbjct: 123 NQVFAKYNVSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQ 177
Query: 238 DRMTECVY-------------TEKLTSFETSVVPEEVRFVPVMENGRKALEEINQEMGLA 284
+M ++ E L + P N + + I E+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 285 FDEQDLQYYTR--LFKEDIKRNPTTVELFDI 313
+ Y L ++ +N F++
Sbjct: 238 LKSKP---YENCLLVLLNV-QNAKAWNAFNL 264
Score = 34.1 bits (77), Expect = 0.49
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 35/116 (30%)
Query: 1329 HSHL----APVRYCDDDGNPTEVYPF-------NVNGSPLGVAAICSPDGRHLAMMPHPE 1377
H H+ +Y D F +V P + + + H+ M
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAV 61
Query: 1378 RC--FLMW--------------------QYPWYPKNWNVDKKGPSPWLKMFQNARE 1411
L W Y + +++ PS +M+ R+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 9e-10
Identities = 99/546 (18%), Positives = 171/546 (31%), Gaps = 164/546 (30%)
Query: 12 EADFLQGT--HRNTLFLNGNS---AIKRKNLL---WGALSNQNSKFGISNRKSVSLKCCA 63
E +L+G H L + +K K L+ A F S +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD-KKSNSALFRAVG 150
Query: 64 QSKPR--AVVSGDKTASVDEQPNLSEKPAQEVVHFYRI--PLLQD--SAAAELLKSVQKK 117
+ + A+ G Q N ++ +E+ Y+ L+ D +AE L + +
Sbjct: 151 EGNAQLVAIFGG--------QGN-TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 118 ISNQIVGLKTEHCFNIGLDSRISTKKLEVLKWLLQETYEPENLGTESFLEKKKQKGLKAV 177
E F GL+ +L+WL P N + +L +
Sbjct: 202 TL------DAEKVFTQGLN---------ILEWL----ENPSNTPDKDYL----------L 232
Query: 178 IVEV-GPRLSFTTAWSANAVSICRVCGLTEVTRLERSRRYLLFSKG-------ALQDNQI 229
+ + P + A+ V ++ G T + S+G A D+
Sbjct: 233 SIPISCPLIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-W 289
Query: 230 NDFAAMVHDRMT-------ECVYTEKLTSFETSVVPEEVRFVPVMENGRKALEEINQEM- 281
F V +T C TS S++ + + EN E + M
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL------ENN----EGVPSPML 339
Query: 282 ---GLAFDEQDLQYYTRLFKEDIKRN---PTTVELFDIAQSNSEHSRHWFFTGKIVIDGK 335
L ++ +Q Y K N P ++ I+ N +++ +V+ G
Sbjct: 340 SISNLTQEQ--VQDYVN------KTNSHLPAGKQVE-ISLVNG--AKN------LVVSGP 382
Query: 336 PMVRTLMQIV----KSTLQANPNNSVIGFKDNSSAI-KGF-PV------KQLRPVQPGSR 383
P ++L + K+ + + S I F + F PV L P
Sbjct: 383 P--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD--- 437
Query: 384 CQLSESSQDLDVLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCV 443
+++ +V F A+ P V Y +T G +R + V C+
Sbjct: 438 -LINKDLVKNNVSFNAKDIQIP--V--Y---DTFDGSDLRVLSGSISERIV------DCI 483
Query: 444 GNLNVEGSYAPWEDPSFTYPSNL-------ASPLQIL------------IDAS----NGA 480
L V+ WE + +++ AS L +L I A N
Sbjct: 484 IRLPVK-----WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 481 SDYGNK 486
DYG K
Sbjct: 539 DDYGFK 544
Score = 59.7 bits (144), Expect = 8e-09
Identities = 121/712 (16%), Positives = 216/712 (30%), Gaps = 292/712 (41%)
Query: 424 DTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDPSFTYPSNL---ASPLQ-----ILID 475
D ++T R ++ G+L P+ AS LQ IL +
Sbjct: 2 DAYST-R-PLTLSH------GSLEH----------VLLVPTASFFIASQLQEQFNKILPE 43
Query: 476 ASNG-ASDYGNKFGEP-----LI---QGYTRTFGMRLPSGQRREWLKPIMFSGGIGQIDH 526
+ G A+D EP L+ GY + GQ + L + + ++
Sbjct: 44 PTEGFAADD-----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-----LTEFEN 93
Query: 527 NHISKGEPDIGMLVVKIGGP-------------AY---RIGMGGGAASSMVSGQNDADLD 570
++ +G DI L K+ Y RI A ++++ L
Sbjct: 94 CYL-EGN-DIHALAAKLLQENDTTLVKTKELIKNYITARI-----MAKRPFDKKSNSAL- 145
Query: 571 FNAVQRGDA-----------------EMAQKLYRV----VRACIE-MGET-NPIISIHDQ 607
F AV G+A E+ + LY+ V I+ ET + +I
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 608 GAGGNCNVVKEIIYPKGAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESR---DL 664
E ++ +G ++I W L P + D
Sbjct: 205 ---------AEKVFTQG--LNILE-------------W----------LENPSNTPDKDY 230
Query: 665 LQSICERERVSMAVIGTISGEGRVVLVDSAAVQKCQSSGLPPPPPAVDLELERVL----- 719
L SI +S +IG I L + G P EL L
Sbjct: 231 LLSI----PISCPLIGVIQ------LAHYVVT--AKLLGFTPG------ELRSYLKGATG 272
Query: 720 --GDMP-------QKTFE-------------FH---HADQAREPLDIAPGITVMDSLKRV 754
+ ++E F +A + P I + DSL+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLENN 331
Query: 755 LRLPS----V--CSKRFLTTKVDRCVTGLVAQQQTVGPLQITL---ADVAVIAQTYTDLT 805
+PS + ++ + V++ + L A +Q ++I+L A V+ +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----VEISLVNGAKNLVV-------S 380
Query: 806 GGACAIGEQPIKGLLNPKAMARLAV----GEALTNLVWAKVTSLSHVKASGNWMY---AA 858
G P+++ L + +A + L +++ S K + + A+
Sbjct: 381 G--------------PPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVAS 425
Query: 859 ----KLDGEGAAMYDAATALAEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVY 914
L + A+ + + +++ ++ + + I VY
Sbjct: 426 PFHSHL------LVPASDLINKDLVKNNVSFNAK-------------------DIQIPVY 460
Query: 915 VTCPDITKTVTPDLKLGDDGILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLK 974
T DG DL R L GS ++ D + E K
Sbjct: 461 DT---------------FDG----SDL----RVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 975 RVFET-VQDL-------IGDELVSTGHDISDG-G---LLVCTLEMSFAGNYG 1014
T + D +G L H DG G ++ TL+++ +YG
Sbjct: 498 ---ATHILDFGPGGASGLGV-LT---HRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 50.8 bits (121), Expect = 3e-06
Identities = 80/519 (15%), Positives = 146/519 (28%), Gaps = 178/519 (34%)
Query: 219 FSKGALQDNQINDFAAMVHDRMTECVYTEKLTSFETSVVPEEVRFVPVMENGRKALEEIN 278
F L+ N I+ AA V+ +++N A
Sbjct: 91 FENCYLEGNDIHALAA----------------KLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 279 QEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFDIAQSNSEHSRHWF------FTGKIVI 332
+ + + LF+ + N V +F Q N++ +F +
Sbjct: 135 RPFDKKSN-------SALFRAVGEGNAQLVAIFG-GQGNTD---DYFEELRDLYQ----- 178
Query: 333 DGKPMVRTLMQIVKSTLQ---ANPNNSVIGFKDNSSAIKGFPVKQ-LRPVQPGSRCQLSE 388
+V L++ TL ++ F +G + + L P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT------QGLNILEWLE--NP-------S 223
Query: 389 SSQDLDVLFTAETHNFP----CAVAPYPGAETGAG---GRIRDTH--ATGRGSFVVASTA 439
++ D D L + + P +A Y G G +R ATG +V + A
Sbjct: 224 NTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 440 GYCVGNLNVEGSYAPWEDPSF--------------------TYPSNLASPLQILIDASNG 479
+ S WE SF YP N + P IL D+
Sbjct: 283 ------IAETDS---WE--SFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLE- 329
Query: 480 ASDYGNKFGEP----LIQGYTRT--------FGMRLPSGQR------------------- 508
N G P I T+ LP+G++
Sbjct: 330 -----NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 509 -----REWLKPIMFSGGIGQIDHNHI--SKGEPDIGMLVVKIGGP---AYRIGMGGGAAS 558
L+ G+ Q + I S+ + + + P + A+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRFLPVASPFHSHL---L-VPASD 437
Query: 559 SMVSGQNDADLDFNA---------------VQRGDAEMAQKLYR-VVRACIEMGETNPII 602
+ ++ FNA ++ +++++ ++R ++ T
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 603 SIH--DQGAGGNCNV---VKEIIYPKGAEIDIRAIIVGD 636
+ H D G GG + G +R I+ G
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTG----VRVIVAGT 532
Score = 48.5 bits (115), Expect = 2e-05
Identities = 90/626 (14%), Positives = 160/626 (25%), Gaps = 245/626 (39%)
Query: 311 FDIAQSNSEHS-----RHWFFTGKIVIDGKPMVRTLMQIVKSTLQANPNNSVIGFKDNSS 365
++ + EH +F L + L P + ++
Sbjct: 9 LTLSHGSLEHVLLVPTASFFI-----------ASQLQEQFNKILPE-PTEGFAADDEPTT 56
Query: 366 AIK------GFPVKQLRPVQPGSRCQLSESS-QDL--DVLFTAETHNFPCAVAPYPGAET 416
+ G+ + P + G Q+ + L + H A
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL---AAKLLQEND 113
Query: 417 GAGGRIRDT--------HATGRG-------SFVVASTAG----YCV----GNLNVEGSYA 453
+ ++ R + A G + GN + Y
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---Y- 169
Query: 454 PWEDPSF--------TYPSNL-------ASPLQILIDASNGASDYGNKFGEPLIQGYTRT 498
F TY + A L LI + A +T+
Sbjct: 170 ------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----------FTQ- 211
Query: 499 FGMRLPSGQRREWLK-----P-------IMFSG-GIG--QIDH----NHISKGEPDIGML 539
G+ + EWL+ P I S IG Q+ H + P G L
Sbjct: 212 -GLNI-----LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GEL 263
Query: 540 VVKIGGPAYRIGMGGG--AASSMVSGQNDADLDFNAVQ----------RGDAEMAQKLY- 586
+ G G G A ++ + + + R + Y
Sbjct: 264 RSYLKGA---TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-----CYEAYP 315
Query: 587 ------RVVRACIEMGETNP--IISIHDQGAGGNCNVVKEII------YPKGAEIDI--- 629
++ +E E P ++SI + V++ + P G +++I
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSI----SNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 630 ---RAIIVGDHTLSVLEIWGAEYQEQDAVLVKPESRDLLQSICERERVSMAVIGT----I 682
+ ++V G P+S L + R + A G I
Sbjct: 372 NGAKNLVVS----------GP-----------PQS---LYGLNLTLRKAKAPSGLDQSRI 407
Query: 683 SGEGRVVLVDSAAVQKCQSSGLP---P---P--PPAVDLELERVLGDMPQKTFEFHHADQ 734
R + K + LP P PA DL + D+ + F+ D
Sbjct: 408 PFSERKL--------KFSNRFLPVASPFHSHLLVPASDL----INKDLVKNNVSFNAKD- 454
Query: 735 AREPLDIAPGITVMDSLK-RVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLAD 793
+ I V D+ LR + ++ + P++
Sbjct: 455 ----I----QIPVYDTFDGSDLR------------VLSGSISERIVDCIIRLPVKWETT- 493
Query: 794 VAVIAQTYTDLT-------GGACAIG 812
T T GGA +G
Sbjct: 494 ------TQFKATHILDFGPGGASGLG 513
Score = 47.4 bits (112), Expect = 5e-05
Identities = 46/263 (17%), Positives = 85/263 (32%), Gaps = 84/263 (31%)
Query: 1031 FAEELGL-VLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHLNEKTSLL 1089
F + G +L++ +N V+ +H G + I + S+ E VDG + +
Sbjct: 1653 FKDTYGFSILDIVINN--PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK---IF 1707
Query: 1090 RDMWEETSFELEKFQRLASCVESEKEGLKSRCEPLWKLSFT-PSLTDEKYMNATSKPKVA 1148
+++ E ++ + SEK L FT P+LT K
Sbjct: 1708 KEINEHST---------SYTFRSEKGLLS-------ATQFTQPALT------LMEKAAFE 1745
Query: 1149 VIREEGSNGDREMSAAF-------YAAGFEPWDVTMSDL--INGAISLDE------FRGI 1193
++ +G A F YAA L + +S++ +RG+
Sbjct: 1746 DLKSKGL---IPADATFAGHSLGEYAA-----------LASLADVMSIESLVEVVFYRGM 1791
Query: 1194 VF--------VGGFSYADVLDSAKGWSASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQL 1245
+G +Y + + + F+Q L E + + + + N
Sbjct: 1792 TMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN---- 1845
Query: 1246 MALLGW--IPGPQVGGVHGAGGD 1266
+ Q V A GD
Sbjct: 1846 ------YNVENQQY--V--AAGD 1858
Score = 45.4 bits (107), Expect = 2e-04
Identities = 53/292 (18%), Positives = 93/292 (31%), Gaps = 97/292 (33%)
Query: 862 GEGAAMYD----AATALAEA----MIELGIAI-DGGKDS-LSMAAYSGGEVVKAPGSLVI 911
G G +Y A A G +I D ++ +++ + GGE K
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 912 S-VYVTCPD-------ITKTVTPDLKL----GDDGIL----------LHIDLA------- 942
+ ++ T D I K + + G+L ++ A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 943 KGKRRLG--------G--SAL---AQVFDQVGNESPDLEDVPYLKRVF---ETVQDLI-G 985
KG G +AL A V +E + ++ VF T+Q +
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMS--------IESL--VEVVFYRGMTMQVAVPR 1799
Query: 986 DELVSTGHDISDGGLLVCTLEMSFAGNYG-ITLDLNSEGNSLFQTLFAEELGLVLEV--- 1041
DEL + + + A N G + + E + G ++E+
Sbjct: 1800 DELGRSNYGM-------------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 1042 -----------SKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDGLTHL 1082
LDTV+ L+ + I ++ S S+E +V+G HL
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE-EVEG--HL 1895
Score = 44.3 bits (104), Expect = 3e-04
Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 67/231 (29%)
Query: 729 FHHADQAREP------LDIA----PGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLV 778
++ AD + LDI +T+ ++ R+ + + + V G +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI----RENYSAMIFETIVDGKL 1701
Query: 779 AQQQTVGPLQITLADV------AVIAQT-YTDLTGGACAIGEQP-I-------------K 817
++ + +++ T +T QP + K
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFT-----------QPALTLMEKAAFEDLKSK 1750
Query: 818 GLLNPKAMARLA---VGE--ALTNLVWAKVTSLSH----VKASGNWMY-AAKLDGEGAAM 867
GL+ A A +GE AL +L A V S+ V G M A D G +
Sbjct: 1751 GLIPADAT--FAGHSLGEYAALASL--ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 868 YDAATALAEAMIELGIAIDGGKDSLSMAAYSGGEVVKA-----PGS-LVIS 912
Y A+ + + + + + G +V+ V +
Sbjct: 1807 YGMI-AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 42.3 bits (100), Expect = 8e-04
Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 29/217 (13%)
Query: 875 AEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDDG 934
E E+ + I G D+ +VV+ + + K+GD
Sbjct: 118 DETAREVPVPIVTG-DT---------KVVEDKIEMFVITAGIGIAEHPVSDAGAKVGDA- 166
Query: 935 ILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHD 994
+L+ + G AL + + E+ DV + V + V + IG E + D
Sbjct: 167 VLVSGTIG-----DHGIALMSHREGIAFETELKSDVAPIWDVVKAVAETIGWENIHAMKD 221
Query: 995 ISDGGLLVCTLEMSFAGNYGITLD-----LNSEGNSLFQTL------FAEELGLVLEVSK 1043
+ GL E++ N GI + + E + + L A E +V+ V++
Sbjct: 222 PTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAR 281
Query: 1044 SNLDTVSKKL--HDAGVSAEIIGQVNSSHSVEIKVDG 1078
+ + + + G +A IIG+V + + ++ ++
Sbjct: 282 EYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLET 318
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 38.0 bits (89), Expect = 0.017
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 950 GSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSF 1009
G+ + + +Q+G + + D L + +T++D+ G V D + GG+ E +
Sbjct: 178 GATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPG---VKALRDATRGGVNAVVHEFAA 234
Query: 1010 AGNYGITLDLNS-----EGNSLFQTL------FAEELGLVLEVSKSNLDTVSKKL--HDA 1056
A GI + ++ + + L FA E LV+ V ++ + V L H
Sbjct: 235 ACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPL 294
Query: 1057 GVSAEIIGQVNSSHSVEIK 1075
G A +IG+V V +
Sbjct: 295 GKDAALIGEVVERKGVRLA 313
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 624 GAEIDIRAIIVGDHTLSVLEIWGA-------EYQEQDAVL-VKPESRDLLQSICERERVS 675
G EI A+ V V E+ G E + V+ V+ + + + + +
Sbjct: 239 GIEISESALPVKPAVRGVCELLGLDALNFANEGK---LVIAVERNAAEQVLAALHSHPLG 295
Query: 676 M--AVIGTISGEGRVVLVDS 693
A+IG + V L
Sbjct: 296 KDAALIGEVVERKGVRLAGL 315
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 37.6 bits (88), Expect = 0.022
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 993 HDISDGGLLVCTLEMSFAGNYGITLDLNS--------EGNSLFQ---TLFAEELGLVLEV 1041
D + GG+ E+S GI + A E +V+ V
Sbjct: 198 RDPTRGGVAEVLYEISKMSGVGIKIYEEKLPVKESVKSACEFMGIDFLHLANEGKVVVVV 257
Query: 1042 SKSNLDTVSKKL--HDAGVSAEIIGQVNSSHSVEIK 1075
+ + + + H+ G AEIIG+VN S V I
Sbjct: 258 ERDYAEKALEIMKSHEYGKDAEIIGEVNDSKLVTIN 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.059
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 859 KLDGEGA-AMY--DAATALA-EAMIE 880
KL + + +Y D+A ALA +A +E
Sbjct: 24 KL--QASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.23
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 140 STKKLEV-LKWLLQETYEPEN---LGTESFLE 167
+ KKL+ LK Y ++ L ++ +E
Sbjct: 21 ALKKLQASLK-----LYADDSAPALAIKATME 47
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 36.2 bits (84), Expect = 0.067
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 831 GEALTNLV----WAKVTSLSHVKASGNWMYAA--KLDGEGAAMYDAATALAEAMIELGIA 884
G ++ +++ W + T L V G AA G +A AA A + + +
Sbjct: 205 GASVKDMINDDAWNRDTFLPTVGKRG----AAIIDARGVSSAAS-AANAAIDHIHD---W 256
Query: 885 IDG-GKDSLSMAAYSGGEVVKAPGSLVISVYVTCPDITKTVTPDLKLGDD 933
+ G +M S G G ++ VT + + L +
Sbjct: 257 VLGTAGKWTTMGIPSDGSYGIPEG-VIFGFPVTTENGEYKIVQGLSIDAF 305
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 35.2 bits (82), Expect = 0.13
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIK 1075
+G+V+ V + + + + L + G +A IIG+ V
Sbjct: 301 IGMVVAVKEEDAKDIVRLLEEQGETARIIGRTVQGAGVTFN 341
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
PDB: 2yye_A* 2zod_A 2zau_A
Length = 345
Score = 34.7 bits (80), Expect = 0.19
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 1036 GLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEI 1074
GL+ ++K L+ + + + V+ IIG+ + + +E+
Sbjct: 306 GLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEV 344
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 34.3 bits (79), Expect = 0.26
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 1036 GLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVDG 1078
+ + ++ + + V G+ A+I+G V + E+ ++
Sbjct: 340 RMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIES 382
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 34.4 bits (80), Expect = 0.27
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIK 1075
+GLVL VS + + L + G A IIG+V V
Sbjct: 303 IGLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGAGVSFA 343
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 34.0 bits (79), Expect = 0.30
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVE--IKVDGLTH-LNEKTSLLRD 1091
+G VL VSK + + + + A +IG V + +KV L + S+L++
Sbjct: 275 VGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVARAEGSPRVKVKNLIESMQINGSVLKN 334
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 34.2 bits (79), Expect = 0.30
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 859 KLDGEGAAMYDAATALAEAMIELGIAIDGGKDSLSMAAYSGGE--VVKAPGSLVISVYVT 916
+ G +A AA A E + + + G D +SMA S GE + P +V S VT
Sbjct: 231 QARGASSAAS-AANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGI---PEGIVYSFPVT 285
Query: 917 CPDITKTVTPDLKLGDD 933
D V L++ +
Sbjct: 286 AKDGAYRVVEGLEINEF 302
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Length = 349
Score = 34.0 bits (79), Expect = 0.33
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKV 1076
+GL++ + K + L G +A +IG++ +++S E +V
Sbjct: 305 VGLIIALPKDQANAAVALLQAEGETAWVIGEIAAANSNEAQV 346
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate
synthesis, transferase; 2.25A {Escherichia coli}
Length = 347
Score = 33.3 bits (76), Expect = 0.50
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 1036 GLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKVD 1077
GL+L V + V + G+ IG++ + V+
Sbjct: 304 GLLLAVMPEAENEVKATAAEFGIELTAIGELVPARGGRAMVE 345
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 33.3 bits (77), Expect = 0.59
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 865 AAMYDAATALAEAM 878
A+MYD ATALAE +
Sbjct: 128 ASMYDGATALAEGV 141
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases,
riken structural genomics/proteomics initiative, RSGI;
1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 32.3 bits (74), Expect = 0.69
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G QL+A G G V E + I D I
Sbjct: 76 LGICLGHQLIAKFFG-------GKVGRGE---------KAEYSL-----VEIEIIDEXEI 114
Query: 1296 MLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDDDGNP 1344
KG+ VW +H + P + S P+ + P
Sbjct: 115 -FKGLPKRLK-VWESHMDEVKELPPK--FKILARSETCPIEAMKHEELP 159
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein,
GMP synthetase, guanine monophosphate synthetase,
chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Length = 697
Score = 33.4 bits (77), Expect = 0.71
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 24/77 (31%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G Q+M + G G VH E G F D+
Sbjct: 105 LGICYGMQMMNKVFG-------GTVHKKS---------VREDGVFNISV------DNTCS 142
Query: 1296 MLKGMEGSTLGVWAAHG 1312
+ +G++ + V HG
Sbjct: 143 LFRGLQKEEV-VLLTHG 158
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 33.2 bits (77), Expect = 0.75
Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 51/142 (35%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G QL+A LG G V AG E G+ + +T + P
Sbjct: 75 LGICYGMQLLAQELG-------GRVERAG---------RAEYGK-----ALLTRHEGP-- 111
Query: 1296 MLKGMEGSTLGVWAAHGEGRAYFPDDGVLDRILHSHLAPVRYCDDDGNPTEVYPFNVNGS 1355
+ +G+EG VW +H + P + + P
Sbjct: 112 LFRGLEGEVQ-VWMSHQDAVTAPPPG--WRVVAETEENP--------------------- 147
Query: 1356 PLGVAAICSPDGRHLAMMPHPE 1377
VAAI SPDGR + HPE
Sbjct: 148 ---VAAIASPDGRAYGVQFHPE 166
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine amidotransferase,
ligase, cytoplasm; 2.40A {Homo sapiens}
Length = 218
Score = 32.1 bits (74), Expect = 1.0
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 24/77 (31%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G Q+M + G G VH E G F D+
Sbjct: 100 LGICYGMQMMNKVFG-------GTVHKKS---------VREDGVFNISV------DNTCS 137
Query: 1296 MLKGMEGSTLGVWAAHG 1312
+ +G++ + V HG
Sbjct: 138 LFRGLQKEEV-VLLTHG 153
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 32.4 bits (74), Expect = 1.1
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 1036 GLVLEVSKSNLDTVSKKLHDAGVSAEIIGQVNSSHSVEIKV 1076
L + ++ + + + A+IIG+V + + +
Sbjct: 342 RLEIYTDAAHAEGMIAIAKKFNIEAKIIGRVEAPVAGKRLT 382
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus}
Length = 311
Score = 32.1 bits (74), Expect = 1.2
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 624 GAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVL-----------VKPESRDLLQSICERE 672
G +++ A+ + VL G+E + VL V E +++ + +
Sbjct: 224 GVGVEVEALPLYP---DVLAFAGSEEAALELVLYGGEEFEAVLVVPQEGAAAVEARAKAK 280
Query: 673 RVSMAVIGTISGEGRVVLVD 692
+ + G + V L
Sbjct: 281 GLPLFRAGRVVAGEGVYLRG 300
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta
barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris
subsp} PDB: 2z1t_A*
Length = 343
Score = 31.5 bits (72), Expect = 1.7
Identities = 22/154 (14%), Positives = 40/154 (25%), Gaps = 29/154 (18%)
Query: 950 GSALAQVFDQVGNESPDLEDVPYLKRVFETVQDLIGDELVSTGHDISDGGLLVCTLEMSF 1009
G + + + D L RV E + ++ + D + GGL E++
Sbjct: 178 GLTILSQRQGLNFAADVCSDSASLNRVVEKL--VLEVGDIHVLRDPTRGGLATTLNEIAG 235
Query: 1010 AGNYGITLDLNS-------EGNSLFQTLFAEELG-----------LVLEVSKSNLDTVSK 1051
+ + LG L+ + + +
Sbjct: 236 QSQAVCHVLETAVPVRESVRN-------GCSFLGLDPLYLANEGKLICILPEERAEAALA 288
Query: 1052 KL--HDAGVSAEIIGQVNSSHSVEIKVDGLTHLN 1083
L G A IG V S + G +
Sbjct: 289 VLREGPHGEHAARIGSVKSVGELGAARAGQVVME 322
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 29.7 bits (67), Expect = 2.0
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 295 RLFKEDIKRNPTTVELFDIAQS---------NSEHSRHWFFTGKIVIDGKPMVRTLMQIV 345
R+ + N EL + ++ W G++V++ + LM +
Sbjct: 22 RIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVVVEKRGTKTKLMIEL 81
Query: 346 KSTLQA 351
+
Sbjct: 82 ARKIAE 87
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 31.8 bits (73), Expect = 2.0
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 24/93 (25%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAG----------------GDPSQPRFVHNESGR 1279
G+C G Q +A + G V + + +S
Sbjct: 87 FGICYGMQEIAVQMN-------GEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSS 139
Query: 1280 FECRFSSVTIEDSPAIMLKGMEGSTLGVWAAHG 1312
+S+ + + + + ++ VW H
Sbjct: 140 AMDLYSNYKLMNETCCLFENIKSDITTVWMNHN 172
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 28.9 bits (65), Expect = 3.4
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 342 MQI-VKS-----TLQANPNNSVIGFKDNSSAIKGFPVKQLR 376
+ + VK T++ + +V KD ++ P+K+++
Sbjct: 16 IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQ 56
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
flagellatus}
Length = 319
Score = 30.6 bits (70), Expect = 3.4
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 624 GAEIDIRAIIVGDHTLSVLEIWGAEYQEQDAVL-----------VKPESRDLLQSICERE 672
GAE+ ++AI + + + E Q +L + R + I +
Sbjct: 227 GAEVWLKAIPKSEVVSAHSQ----EVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQL 282
Query: 673 RVSMAVIGTISGEGRVVLVD 692
+ MAVIG I+ ++V+
Sbjct: 283 SLDMAVIGRITDTQQLVIHG 302
>3qxb_A Putative xylose isomerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 1.90A {Rhodospirillum rubrum}
Length = 316
Score = 30.5 bits (68), Expect = 4.0
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 258 PEEVRFVPVMENGRKALEEINQE----MGLAFD-----EQDLQYYTRLFKEDIKRNPTTV 308
P F + + + +++ + L D + L + +
Sbjct: 181 PLATEFPSSAADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWI 240
Query: 309 ELFDIAQSNSEHSRHWFFTGKIVIDGKPMVRTLMQI 344
+ I Q++ + RHW FT V+ + + +
Sbjct: 241 AAYHIQQTDGQLDRHWSFTQPGVVTPQRLQDFWDKY 276
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 28.6 bits (64), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 342 MQI-VKS------TLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPG 381
MQI VK+ TL+ P++++ K +G P Q R + G
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 4.8
Identities = 43/364 (11%), Positives = 81/364 (22%), Gaps = 97/364 (26%)
Query: 694 AAVQKCQSSGLPPPPPAVD-LELERV-------LGDMPQKTFEFHHAD-QAREPL----- 739
+ V+ +SG+ P + + V +G + D EP+
Sbjct: 1019 SVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVS--ALRGMFKDRFKDEPVQNDIL 1076
Query: 740 ------DIAPGITVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLAD 793
++ + L P V C T + + V + A
Sbjct: 1077 QESFINTMSAWVN---MLLISSSGPIKTP-------VGACATSVESVDIGVETILSGKAR 1126
Query: 794 VAVIAQTYTDLTGGACAIGEQPIKGLLNPKAMA------------RLA------------ 829
+ + GG E+ N KA +
Sbjct: 1127 ICI--------VGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFM 1178
Query: 830 VGEALTNLVWAKVTSLSHVKASGNWMYA---------------AKLDGEGAAMYDAATAL 874
+ + + G +Y G+G A
Sbjct: 1179 EAQGAGIQI---IMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGI--LTTAREH 1233
Query: 875 AEAMIELGIAIDGGKDSLSMAAYSGGEVVKAPGSL-VISVYVTCPDITKTVTPDLKLGDD 933
++ ++ + L + + P D
Sbjct: 1234 HSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEE-------IP---SEDQ 1283
Query: 934 GILLHIDLAKGKRRLGGSALAQVFDQVGNESPDLE-DVPYLKRVFETVQDLIGDELVSTG 992
L + S L Q GN+ + + L+ T I D V++
Sbjct: 1284 NEFLLERTREIH-NEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASF 1342
Query: 993 HDIS 996
H S
Sbjct: 1343 HGTS 1346
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
binding, plant cell WALL degradation, hydrolase,
cellulases; 1.80A {Cellvibrio japonicus}
Length = 347
Score = 30.2 bits (67), Expect = 4.9
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 438 TAGYCVGNLNVEGSYAPWEDPSFTYPSNLASPL--QILIDASNGASDYGNKFGEPLIQGY 495
T G + + E W + +Y A L Q+ + G + G+
Sbjct: 143 TCGEAIDRVAGEDKNTRWWNARESYGMLTAKALDAQVQLVCWGGRGLIRSWNGKTDDANL 202
Query: 496 TRTFGMRLPSGQRREWLKPIMFSGGIGQID--HNHISKGEPD 535
+ L + + + N S G PD
Sbjct: 203 PDFYQFTLGDTGQAPQWDHHRYQPDLIISAIGTNDFSPGIPD 244
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 29.8 bits (68), Expect = 5.1
Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 48/144 (33%)
Query: 1172 PWDVTMSDLINGAISLDEFRGIVFVGG-FS-YADVLDSAKGWSASIRFNQPLLNQFQEFY 1229
P D+ S+L D G+V GG + ++ N P+L
Sbjct: 44 PNDIDSSEL-------DGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPIL------- 89
Query: 1230 KRPDTFSLGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVT 1288
G+C G Q +A G V A H E G+ + V+
Sbjct: 90 --------GICVGAQFIALHFG-------ASVVKAK---------HPEFGK-----TKVS 120
Query: 1289 IEDSPAIMLKGMEGSTLGVWAAHG 1312
+ S I G+ VW H
Sbjct: 121 VMHSENI-FGGLPSEIT-VWENHN 142
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein
binding; 2.60A {Homo sapiens}
Length = 111
Score = 28.7 bits (64), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 342 MQI-VKS------TLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPG 381
MQI VK+ TL+ P++++ K +G P Q R + G
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 82
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 29.8 bits (68), Expect = 5.9
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 1035 LGLVLEVSKSNLDTVSKKLHD-AGVSAEIIGQVNSSHSVEI 1074
+G+ + S+ D + + IG++ +S VEI
Sbjct: 309 IGMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKVEI 349
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 29.3 bits (65), Expect = 6.3
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 342 MQI-VKS------TLQANPNNSVIGFKDNSSAIKGFPVKQLRPVQPGSRCQLSESSQDLD 394
MQ+ VK+ SV+ K S GF + + V G + D
Sbjct: 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNG--FIAPNTELVTD 58
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 30.0 bits (68), Expect = 7.3
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 209 RLERSRRYLLFSKGALQDNQINDFAAMVHDRMTECVYTEKLTSFETSVVPEEVRFVPVME 268
++ + + D + + D T +T + + ++ F ++E
Sbjct: 47 KMLFFVAETMEEETESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVE 106
Query: 269 NGR-------------KALEEINQEMGLAFDEQDLQYYTRLFKEDIKRNPTTVELFD 312
+ +E+ ++ F++ DL Y +L K+N T +
Sbjct: 107 RVNDGSFQLEDLAQGFRDIEQSDELYENLFEDIDL-YSKKLGATPQKQNQTVAAVMK 162
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 29.8 bits (67), Expect = 7.9
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 862 GEGAAMYDAATALAEAMIELGIAIDGGKDS---LSMAAYSGGEVVKAPGSLVISVYVTC- 917
G +A A ++A+A+ ++ S Y+ G +V S+
Sbjct: 263 GRSSAAS-TAVSIADAIK----SLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSK 317
Query: 918 PDITKTVTPDLKLGD 932
D + D+ D
Sbjct: 318 GDGDYELATDVSNDD 332
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 29.4 bits (67), Expect = 9.4
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 30/84 (35%)
Query: 1237 LGVCNGCQLMA-LLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFSSVTIEDSPAI 1295
LG+C G Q MA LG G V+ E G + R +PA
Sbjct: 86 LGICYGMQTMAYQLG-------GKVNRTA---------KAEFGHAQLRV------LNPAF 123
Query: 1296 MLKGMEGST-------LGVWAAHG 1312
+ G+E L VW +HG
Sbjct: 124 LFDGIEDQVSPQGEPLLDVWMSHG 147
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 29.4 bits (67), Expect = 10.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 270 GRKALEEINQEMGLAFDEQDLQYYTRLFKE--DIKRNPTTVELFDIAQSNSEHSRHWFF 326
GR A++ +E+GL + E++L T+ K D + T EL I + H
Sbjct: 325 GRHAIKARAEELGLHYGEEELHRVTQHIKALADRGQL-TLEELDRILREWITAHHHHHH 382
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,920,301
Number of extensions: 1404196
Number of successful extensions: 3659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3587
Number of HSP's successfully gapped: 76
Length of query: 1414
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1308
Effective length of database: 3,742,167
Effective search space: 4894754436
Effective search space used: 4894754436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)