Query 000575
Match_columns 1413
No_of_seqs 336 out of 2196
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 19:56:09 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 2E-103 5E-108 888.8 34.8 576 636-1412 175-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 1.5E-87 3.3E-92 788.3 40.9 545 636-1413 316-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 3.3E-85 7.2E-90 774.9 37.3 459 638-1393 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 1.9E-82 4.2E-87 756.2 37.8 471 641-1413 200-699 (923)
5 KOG0392 SNF2 family DNA-depend 100.0 2.5E-82 5.3E-87 775.6 37.4 529 616-1412 948-1495(1549)
6 KOG0384 Chromodomain-helicase 100.0 1.7E-82 3.7E-87 782.4 31.7 601 489-1411 241-856 (1373)
7 KOG1001 Helicase-like transcri 100.0 3.7E-81 8E-86 775.2 30.9 556 629-1392 117-673 (674)
8 KOG0389 SNF2 family DNA-depend 100.0 1.6E-80 3.5E-85 738.4 34.0 498 645-1394 398-913 (941)
9 PLN03142 Probable chromatin-re 100.0 4.1E-79 8.9E-84 782.9 47.0 474 638-1412 162-641 (1033)
10 KOG0391 SNF2 family DNA-depend 100.0 6E-78 1.3E-82 725.9 33.8 581 638-1413 607-1429(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 3.7E-76 8.1E-81 686.8 32.0 544 640-1394 561-1179(1185)
12 KOG0386 Chromatin remodeling c 100.0 2.2E-68 4.7E-73 647.4 19.3 461 636-1391 384-860 (1157)
13 KOG0390 DNA repair protein, SN 100.0 4.3E-66 9.3E-71 635.6 39.8 494 639-1412 231-748 (776)
14 KOG1015 Transcription regulato 100.0 5.1E-62 1.1E-66 580.9 31.4 580 644-1412 666-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 7.1E-61 1.5E-65 630.0 35.8 495 641-1412 333-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 6E-54 1.3E-58 503.5 26.6 578 644-1412 252-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 4.4E-53 9.5E-58 482.1 31.4 418 643-1389 195-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 3.7E-52 8E-57 533.6 35.5 420 644-1392 150-628 (956)
19 KOG0298 DEAD box-containing he 100.0 1.7E-50 3.6E-55 501.9 17.9 258 756-1058 419-691 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 6.1E-43 1.3E-47 403.5 18.3 291 650-1058 1-299 (299)
21 KOG0383 Predicted helicase [Ge 100.0 2.2E-37 4.7E-42 379.6 8.3 397 645-1323 294-696 (696)
22 TIGR00603 rad25 DNA repair hel 100.0 4.1E-34 8.8E-39 356.8 36.7 115 1257-1377 495-615 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 2E-29 4.3E-34 328.5 40.5 125 1257-1386 364-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 8.1E-24 1.8E-28 247.0 35.5 458 645-1387 14-499 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 1.4E-22 3E-27 247.1 33.6 122 1257-1381 282-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 1.6E-22 3.4E-27 250.9 33.7 114 1257-1371 343-457 (501)
27 KOG1123 RNA polymerase II tran 99.8 3.3E-19 7.1E-24 205.5 21.7 111 1257-1373 542-657 (776)
28 PTZ00110 helicase; Provisional 99.8 6.1E-18 1.3E-22 211.7 31.1 109 1257-1369 376-484 (545)
29 PRK11776 ATP-dependent RNA hel 99.8 8.1E-18 1.8E-22 207.4 31.8 109 1257-1369 241-349 (460)
30 PRK11192 ATP-dependent RNA hel 99.8 1.4E-17 3E-22 203.8 29.3 104 1257-1362 244-347 (434)
31 TIGR00614 recQ_fam ATP-depende 99.8 2.3E-17 5E-22 203.7 28.4 104 1257-1362 225-328 (470)
32 PLN00206 DEAD-box ATP-dependen 99.8 3.2E-17 7E-22 204.4 29.7 107 1259-1369 368-475 (518)
33 KOG0354 DEAD-box like helicase 99.8 1.4E-16 3E-21 196.7 34.1 126 1257-1389 412-548 (746)
34 PRK04837 ATP-dependent RNA hel 99.8 3.6E-17 7.8E-22 199.6 28.1 107 1258-1368 255-361 (423)
35 PRK10590 ATP-dependent RNA hel 99.8 4.1E-17 8.9E-22 200.8 28.3 108 1258-1369 245-352 (456)
36 PRK04537 ATP-dependent RNA hel 99.8 8.7E-17 1.9E-21 202.2 29.3 108 1257-1368 256-363 (572)
37 PTZ00424 helicase 45; Provisio 99.8 9.7E-17 2.1E-21 194.1 27.9 109 1258-1370 267-375 (401)
38 PRK11634 ATP-dependent RNA hel 99.8 4.1E-16 8.9E-21 197.4 32.6 100 1258-1359 245-344 (629)
39 PRK11057 ATP-dependent DNA hel 99.8 1.5E-16 3.2E-21 201.9 28.7 101 1257-1359 235-335 (607)
40 PRK01297 ATP-dependent RNA hel 99.7 1.8E-16 4E-21 196.1 28.2 108 1258-1369 335-442 (475)
41 TIGR01389 recQ ATP-dependent D 99.7 2E-16 4.3E-21 200.7 28.4 102 1258-1361 224-325 (591)
42 TIGR00643 recG ATP-dependent D 99.7 1.1E-15 2.5E-20 194.6 30.1 79 1281-1361 481-560 (630)
43 PRK11448 hsdR type I restricti 99.7 9.8E-16 2.1E-20 202.7 29.1 106 1258-1366 698-815 (1123)
44 TIGR00580 mfd transcription-re 99.7 2.7E-15 5.8E-20 195.5 29.0 107 1258-1368 660-769 (926)
45 PRK10689 transcription-repair 99.7 3.5E-15 7.6E-20 198.2 29.1 100 1258-1359 809-911 (1147)
46 PRK10917 ATP-dependent DNA hel 99.7 7.6E-15 1.6E-19 188.4 30.3 81 1282-1366 505-586 (681)
47 PLN03137 ATP-dependent DNA hel 99.7 7.4E-15 1.6E-19 188.9 26.9 104 1258-1363 680-783 (1195)
48 KOG0331 ATP-dependent RNA heli 99.7 9.1E-15 2E-19 176.2 24.9 101 1257-1359 340-440 (519)
49 TIGR03817 DECH_helic helicase/ 99.6 1.6E-13 3.5E-18 177.1 29.9 116 1258-1377 271-394 (742)
50 PRK13767 ATP-dependent helicas 99.6 2.1E-13 4.5E-18 179.3 29.1 104 1258-1363 284-394 (876)
51 PRK02362 ski2-like helicase; P 99.6 1.8E-13 3.8E-18 177.9 27.5 81 1284-1366 305-394 (737)
52 TIGR00348 hsdR type I site-spe 99.5 1.5E-12 3.4E-17 166.6 29.3 108 1258-1367 514-649 (667)
53 PRK01172 ski2-like helicase; P 99.5 1.3E-12 2.7E-17 168.7 28.5 72 1285-1359 288-368 (674)
54 cd00079 HELICc Helicase superf 99.5 5.7E-14 1.2E-18 141.9 11.6 105 1257-1363 27-131 (131)
55 COG0513 SrmB Superfamily II DN 99.5 5.3E-12 1.2E-16 157.3 29.4 119 1259-1382 274-392 (513)
56 TIGR01587 cas3_core CRISPR-ass 99.5 2.4E-12 5.2E-17 153.8 25.3 108 1257-1369 221-338 (358)
57 PRK00254 ski2-like helicase; P 99.5 3.2E-12 6.9E-17 165.9 27.9 84 1284-1369 297-388 (720)
58 KOG0330 ATP-dependent RNA heli 99.4 5.1E-12 1.1E-16 144.1 21.2 123 1257-1383 299-423 (476)
59 TIGR03714 secA2 accessory Sec 99.4 6.4E-12 1.4E-16 158.8 21.1 98 1257-1359 423-529 (762)
60 PF00271 Helicase_C: Helicase 99.4 2.9E-13 6.3E-18 125.6 6.5 78 1276-1355 1-78 (78)
61 COG1200 RecG RecG-like helicas 99.4 3.3E-11 7E-16 147.9 25.4 74 1282-1357 507-581 (677)
62 PF04851 ResIII: Type III rest 99.4 8.7E-13 1.9E-17 141.0 10.3 167 645-925 2-183 (184)
63 PRK09200 preprotein translocas 99.4 4.5E-11 9.8E-16 152.5 27.3 113 1257-1378 427-547 (790)
64 TIGR02621 cas3_GSU0051 CRISPR- 99.4 1.4E-10 3E-15 148.2 31.0 103 1257-1365 271-390 (844)
65 KOG0328 Predicted ATP-dependen 99.4 2E-11 4.4E-16 133.9 19.4 110 1259-1372 267-376 (400)
66 PRK12898 secA preprotein trans 99.4 1.8E-10 3.9E-15 144.3 28.5 113 1257-1378 472-592 (656)
67 smart00487 DEXDc DEAD-like hel 99.3 8E-12 1.7E-16 133.8 13.3 167 645-933 7-179 (201)
68 PRK05580 primosome assembly pr 99.3 1.3E-10 2.8E-15 149.2 26.1 95 1271-1367 439-549 (679)
69 COG4096 HsdR Type I site-speci 99.3 9.7E-11 2.1E-15 145.2 23.0 107 1258-1366 426-545 (875)
70 TIGR00963 secA preprotein tran 99.3 3E-11 6.6E-16 151.9 18.0 99 1257-1359 404-509 (745)
71 KOG0333 U5 snRNP-like RNA heli 99.3 1.4E-10 3.1E-15 136.3 22.0 110 1258-1370 517-626 (673)
72 KOG0350 DEAD-box ATP-dependent 99.3 7E-11 1.5E-15 138.3 19.2 107 1257-1367 428-538 (620)
73 PHA02653 RNA helicase NPH-II; 99.3 1.2E-09 2.6E-14 138.8 32.1 110 1258-1373 395-518 (675)
74 TIGR03158 cas3_cyano CRISPR-as 99.3 2.9E-10 6.4E-15 135.9 25.1 85 1257-1352 271-357 (357)
75 smart00490 HELICc helicase sup 99.3 1.2E-11 2.5E-16 114.4 7.5 81 1273-1355 2-82 (82)
76 PRK09401 reverse gyrase; Revie 99.2 7.8E-10 1.7E-14 148.2 27.6 90 1259-1354 329-431 (1176)
77 cd00046 DEXDc DEAD-like helica 99.2 4.8E-11 1E-15 120.2 12.0 137 670-924 2-144 (144)
78 KOG4284 DEAD box protein [Tran 99.2 4.9E-10 1.1E-14 134.0 21.7 108 1259-1369 273-380 (980)
79 PRK09751 putative ATP-dependen 99.2 1.7E-09 3.6E-14 145.7 25.8 95 1258-1354 244-371 (1490)
80 TIGR00595 priA primosomal prot 99.2 3.4E-09 7.3E-14 131.9 26.4 95 1272-1368 272-382 (505)
81 COG1201 Lhr Lhr-like helicases 99.2 4.5E-09 9.8E-14 133.9 27.0 120 1259-1384 254-375 (814)
82 KOG0335 ATP-dependent RNA heli 99.2 2.7E-09 6E-14 127.4 23.3 105 1257-1363 336-440 (482)
83 KOG0336 ATP-dependent RNA heli 99.1 2.6E-09 5.6E-14 122.3 20.3 110 1257-1369 464-573 (629)
84 KOG0348 ATP-dependent RNA heli 99.1 1.5E-09 3.3E-14 128.0 18.2 92 1282-1378 471-562 (708)
85 TIGR01054 rgy reverse gyrase. 99.1 4E-09 8.6E-14 141.7 24.7 75 1259-1338 327-408 (1171)
86 TIGR01970 DEAH_box_HrpB ATP-de 99.1 7.3E-09 1.6E-13 134.6 26.4 107 1259-1370 210-337 (819)
87 COG0514 RecQ Superfamily II DN 99.1 5.7E-09 1.2E-13 128.8 22.6 103 1258-1362 230-332 (590)
88 KOG0343 RNA Helicase [RNA proc 99.1 1.2E-08 2.5E-13 121.0 22.6 122 1257-1383 312-435 (758)
89 KOG0342 ATP-dependent RNA heli 99.1 1.3E-08 2.8E-13 119.9 22.8 99 1259-1359 331-429 (543)
90 COG1205 Distinct helicase fami 99.1 6.7E-09 1.5E-13 135.5 22.6 118 1257-1378 305-431 (851)
91 COG1204 Superfamily II helicas 99.1 7.3E-09 1.6E-13 133.4 22.1 103 646-817 31-134 (766)
92 PRK09694 helicase Cas3; Provis 99.0 7.4E-08 1.6E-12 125.6 30.9 97 1257-1357 559-665 (878)
93 PRK13104 secA preprotein trans 99.0 1.1E-08 2.3E-13 130.9 22.4 113 1257-1378 443-593 (896)
94 KOG0339 ATP-dependent RNA heli 99.0 3E-08 6.6E-13 116.4 23.5 111 1258-1372 468-578 (731)
95 PRK14701 reverse gyrase; Provi 99.0 4.2E-08 9E-13 134.7 27.9 94 1258-1357 330-446 (1638)
96 PRK11664 ATP-dependent RNA hel 99.0 3.6E-08 7.8E-13 128.5 26.2 109 1258-1371 212-341 (812)
97 PRK12906 secA preprotein trans 99.0 1.1E-08 2.3E-13 130.4 20.7 100 1257-1360 439-546 (796)
98 COG1197 Mfd Transcription-repa 98.9 2.5E-07 5.4E-12 120.0 28.1 111 1266-1380 811-929 (1139)
99 COG1202 Superfamily II helicas 98.9 6.4E-08 1.4E-12 115.3 20.8 118 1259-1379 441-572 (830)
100 PRK12904 preprotein translocas 98.9 6.9E-08 1.5E-12 123.6 22.3 103 1257-1363 429-569 (830)
101 KOG0338 ATP-dependent RNA heli 98.9 3E-08 6.5E-13 116.7 16.9 97 1259-1357 427-523 (691)
102 COG4889 Predicted helicase [Ge 98.9 4.4E-08 9.5E-13 120.5 16.9 76 1282-1358 499-576 (1518)
103 PRK13107 preprotein translocas 98.8 1.9E-07 4.1E-12 119.4 23.1 112 1257-1377 448-596 (908)
104 KOG0345 ATP-dependent RNA heli 98.8 6.3E-07 1.4E-11 105.4 24.1 104 1257-1362 254-359 (567)
105 cd00268 DEADc DEAD-box helicas 98.8 3.1E-08 6.8E-13 108.6 12.8 109 646-818 21-132 (203)
106 PRK12900 secA preprotein trans 98.7 7.1E-06 1.5E-10 105.8 32.5 114 1257-1379 597-718 (1025)
107 KOG0952 DNA/RNA helicase MER3/ 98.6 1.8E-06 3.9E-11 109.5 22.3 83 1288-1372 402-494 (1230)
108 PRK11131 ATP-dependent RNA hel 98.6 3.6E-06 7.8E-11 112.5 26.0 108 1258-1372 286-414 (1294)
109 KOG0341 DEAD-box protein abstr 98.6 1.2E-07 2.5E-12 108.3 9.7 125 1257-1385 420-548 (610)
110 KOG0332 ATP-dependent RNA heli 98.6 2E-07 4.3E-12 106.7 11.3 110 1259-1372 331-447 (477)
111 TIGR01967 DEAH_box_HrpA ATP-de 98.6 4.6E-06 1E-10 111.8 25.3 108 1258-1372 279-407 (1283)
112 PF00270 DEAD: DEAD/DEAH box h 98.6 1.9E-07 4.1E-12 98.9 10.1 159 649-932 2-169 (169)
113 KOG0334 RNA helicase [RNA proc 98.6 1.6E-06 3.5E-11 110.8 18.9 108 1257-1368 612-719 (997)
114 PF13872 AAA_34: P-loop contai 98.5 2E-06 4.3E-11 98.6 17.2 245 647-1016 38-302 (303)
115 COG1203 CRISPR-associated heli 98.5 1.5E-05 3.2E-10 104.1 25.3 126 1257-1386 439-569 (733)
116 TIGR00631 uvrb excinuclease AB 98.5 1.1E-06 2.3E-11 112.6 14.0 117 1257-1378 441-564 (655)
117 KOG1513 Nuclear helicase MOP-3 98.4 6.4E-05 1.4E-09 92.8 26.4 86 1302-1389 851-944 (1300)
118 PF11496 HDA2-3: Class II hist 98.4 1.1E-05 2.3E-10 94.0 18.3 124 1257-1381 116-257 (297)
119 PRK12326 preprotein translocas 98.4 4.9E-05 1.1E-09 95.9 24.8 113 1257-1379 426-554 (764)
120 PRK05298 excinuclease ABC subu 98.4 4.3E-06 9.3E-11 107.6 15.9 107 1257-1368 445-556 (652)
121 COG0556 UvrB Helicase subunit 98.3 0.0011 2.4E-08 80.1 32.6 123 1257-1382 445-572 (663)
122 KOG0326 ATP-dependent RNA heli 98.3 4.7E-07 1E-11 101.6 4.5 98 1259-1358 323-420 (459)
123 PF13871 Helicase_C_4: Helicas 98.2 1.7E-06 3.7E-11 98.8 7.3 94 1299-1394 52-153 (278)
124 COG4098 comFA Superfamily II D 98.2 0.0014 3E-08 75.5 29.9 96 1257-1356 304-403 (441)
125 KOG0340 ATP-dependent RNA heli 98.2 4.7E-06 1E-10 95.3 9.8 101 1257-1359 253-353 (442)
126 TIGR00596 rad1 DNA repair prot 98.2 0.00016 3.4E-09 94.3 24.7 111 887-1032 32-148 (814)
127 KOG0327 Translation initiation 98.1 7.1E-06 1.5E-10 95.2 8.3 108 1259-1370 264-371 (397)
128 PRK12899 secA preprotein trans 98.1 0.00039 8.4E-09 90.1 24.3 111 1257-1378 567-687 (970)
129 KOG0344 ATP-dependent RNA heli 98.0 1.9E-05 4.1E-10 95.9 9.8 99 1259-1359 388-487 (593)
130 PRK13103 secA preprotein trans 98.0 0.00038 8.3E-09 90.0 21.1 101 1257-1362 448-586 (913)
131 PRK12903 secA preprotein trans 97.9 0.00098 2.1E-08 85.6 22.5 113 1257-1378 425-545 (925)
132 COG1198 PriA Primosomal protei 97.8 0.0014 2.9E-08 84.3 22.2 96 1272-1369 494-605 (730)
133 KOG0951 RNA helicase BRR2, DEA 97.8 0.0015 3.1E-08 85.1 21.1 71 1282-1355 607-688 (1674)
134 COG1110 Reverse gyrase [DNA re 97.7 0.0011 2.3E-08 85.3 18.6 75 1258-1338 335-416 (1187)
135 KOG0947 Cytoplasmic exosomal R 97.6 0.001 2.2E-08 84.6 16.8 79 1289-1370 637-723 (1248)
136 KOG0347 RNA helicase [RNA proc 97.5 0.00013 2.9E-09 87.6 5.7 130 1257-1389 462-611 (731)
137 KOG0353 ATP-dependent DNA heli 97.4 0.0053 1.2E-07 70.8 17.5 89 1257-1347 316-404 (695)
138 KOG0349 Putative DEAD-box RNA 97.4 0.00035 7.6E-09 81.5 8.0 95 1257-1353 504-601 (725)
139 KOG0949 Predicted helicase, DE 97.4 0.0076 1.6E-07 77.1 19.3 67 1289-1357 969-1036(1330)
140 KOG0346 RNA helicase [RNA proc 97.3 0.00029 6.3E-09 82.9 6.2 109 1258-1369 268-410 (569)
141 KOG0953 Mitochondrial RNA heli 97.3 0.00082 1.8E-08 81.3 9.4 105 1257-1365 357-473 (700)
142 KOG0351 ATP-dependent DNA heli 97.3 0.00052 1.1E-08 90.3 8.3 105 1257-1363 484-588 (941)
143 PRK15483 type III restriction- 97.2 0.0027 5.8E-08 83.3 14.0 37 889-926 204-240 (986)
144 KOG0823 Predicted E3 ubiquitin 97.2 0.00017 3.6E-09 79.0 2.3 55 1091-1147 45-101 (230)
145 KOG0948 Nuclear exosomal RNA h 97.2 0.01 2.2E-07 74.1 17.2 82 1290-1374 454-543 (1041)
146 PF07652 Flavi_DEAD: Flaviviru 97.1 0.0035 7.7E-08 65.1 11.0 42 883-925 92-137 (148)
147 PLN03208 E3 ubiquitin-protein 97.1 0.00029 6.3E-09 76.0 2.5 52 1093-1146 18-84 (193)
148 PRK12901 secA preprotein trans 97.0 0.14 3E-06 67.6 25.7 101 1257-1361 627-735 (1112)
149 PF13923 zf-C3HC4_2: Zinc fing 97.0 0.00036 7.8E-09 56.4 1.6 37 1096-1133 1-38 (39)
150 KOG0320 Predicted E3 ubiquitin 96.9 0.00039 8.4E-09 73.1 1.6 50 1092-1144 130-181 (187)
151 KOG0317 Predicted E3 ubiquitin 96.9 0.00041 8.9E-09 78.1 1.8 49 1094-1145 240-288 (293)
152 CHL00122 secA preprotein trans 96.8 0.076 1.6E-06 69.3 21.6 65 1257-1324 423-488 (870)
153 smart00504 Ubox Modified RING 96.8 0.00059 1.3E-08 60.8 1.8 46 1094-1142 2-47 (63)
154 KOG0978 E3 ubiquitin ligase in 96.7 0.00057 1.2E-08 86.0 1.4 48 1095-1144 645-692 (698)
155 PF15227 zf-C3HC4_4: zinc fing 96.7 0.001 2.2E-08 54.8 2.1 33 1096-1128 1-33 (42)
156 COG0610 Type I site-specific r 96.6 0.01 2.3E-07 79.6 12.1 68 1297-1366 580-650 (962)
157 KOG0337 ATP-dependent RNA heli 96.5 0.0046 1E-07 72.9 6.5 106 1258-1367 261-366 (529)
158 PF00097 zf-C3HC4: Zinc finger 96.2 0.0024 5.1E-08 52.0 1.9 37 1096-1132 1-39 (41)
159 KOG0352 ATP-dependent DNA heli 96.2 0.0086 1.9E-07 70.6 7.0 102 1260-1363 257-358 (641)
160 PF13920 zf-C3HC4_3: Zinc fing 96.0 0.0047 1E-07 52.7 2.4 44 1094-1140 3-47 (50)
161 PF13445 zf-RING_UBOX: RING-ty 95.9 0.0027 5.8E-08 52.6 0.8 36 1096-1132 1-43 (43)
162 PF13086 AAA_11: AAA domain; P 95.9 0.15 3.2E-06 56.5 14.8 39 646-691 1-40 (236)
163 COG4581 Superfamily II RNA hel 95.9 0.041 8.9E-07 72.9 11.5 168 639-939 112-283 (1041)
164 KOG2164 Predicted E3 ubiquitin 95.7 0.0054 1.2E-07 74.2 2.2 53 1093-1145 186-240 (513)
165 PHA02929 N1R/p28-like protein; 95.6 0.01 2.2E-07 66.8 4.2 46 1093-1141 174-227 (238)
166 TIGR00599 rad18 DNA repair pro 95.6 0.0059 1.3E-07 73.5 2.2 48 1093-1143 26-73 (397)
167 smart00184 RING Ring finger. E 95.5 0.0078 1.7E-07 47.2 2.0 38 1096-1133 1-38 (39)
168 TIGR01407 dinG_rel DnaQ family 95.3 0.1 2.2E-06 70.1 12.4 101 1257-1362 673-809 (850)
169 COG5574 PEX10 RING-finger-cont 95.1 0.0098 2.1E-07 66.5 1.6 49 1094-1144 216-265 (271)
170 PF13639 zf-RING_2: Ring finge 94.9 0.014 3E-07 48.4 1.8 38 1095-1133 2-42 (44)
171 KOG1802 RNA helicase nonsense 94.9 0.067 1.4E-06 66.5 8.1 81 646-798 410-491 (935)
172 PF04564 U-box: U-box domain; 94.7 0.016 3.5E-07 53.6 1.8 40 1094-1133 5-44 (73)
173 cd00162 RING RING-finger (Real 94.5 0.022 4.7E-07 46.3 2.0 39 1095-1133 1-40 (45)
174 PHA02926 zinc finger-like prot 94.5 0.021 4.5E-07 62.5 2.2 47 1093-1141 170-230 (242)
175 TIGR03117 cas_csf4 CRISPR-asso 94.2 0.26 5.7E-06 63.3 11.5 81 1257-1342 470-564 (636)
176 PF14634 zf-RING_5: zinc-RING 94.0 0.032 7E-07 46.3 2.1 37 1096-1133 2-41 (44)
177 TIGR00570 cdk7 CDK-activating 93.8 0.042 9E-07 63.8 3.0 49 1094-1144 4-57 (309)
178 PF02562 PhoH: PhoH-like prote 93.1 0.25 5.3E-06 55.0 7.6 43 886-930 119-161 (205)
179 KOG0287 Postreplication repair 93.1 0.026 5.7E-07 64.5 0.0 46 1094-1142 24-69 (442)
180 COG3587 Restriction endonuclea 93.1 0.21 4.6E-06 64.1 7.7 35 889-924 208-242 (985)
181 PF11789 zf-Nse: Zinc-finger o 93.0 0.046 1E-06 48.2 1.3 45 1093-1137 11-57 (57)
182 COG0653 SecA Preprotein transl 92.6 4.3 9.3E-05 53.4 18.6 96 1257-1356 428-534 (822)
183 PRK10536 hypothetical protein; 92.3 0.64 1.4E-05 53.4 9.7 40 888-929 178-217 (262)
184 COG5432 RAD18 RING-finger-cont 92.3 0.058 1.3E-06 60.6 1.3 38 1094-1132 26-63 (391)
185 PF14835 zf-RING_6: zf-RING of 91.9 0.12 2.6E-06 46.2 2.5 42 1094-1140 8-50 (65)
186 PF13307 Helicase_C_2: Helicas 91.8 0.63 1.4E-05 50.0 8.6 77 1257-1339 8-92 (167)
187 TIGR01407 dinG_rel DnaQ family 91.3 0.57 1.2E-05 63.0 9.3 42 645-689 244-285 (850)
188 KOG0824 Predicted E3 ubiquitin 90.9 0.16 3.4E-06 58.1 2.8 56 1093-1150 7-62 (324)
189 COG1199 DinG Rad3-related DNA 90.5 1.2 2.5E-05 58.4 10.7 102 1257-1362 478-612 (654)
190 KOG4172 Predicted E3 ubiquitin 90.3 0.097 2.1E-06 44.8 0.4 47 1092-1140 6-53 (62)
191 KOG1132 Helicase of the DEAD s 90.0 1.2 2.7E-05 57.8 9.8 43 646-691 21-63 (945)
192 TIGR00376 DNA helicase, putati 89.9 3.8 8.2E-05 53.5 14.5 41 645-691 156-196 (637)
193 smart00492 HELICc3 helicase su 89.9 1.4 3E-05 46.2 8.7 71 1270-1342 3-83 (141)
194 KOG0311 Predicted E3 ubiquitin 89.6 0.045 9.7E-07 63.6 -2.8 47 1094-1142 44-91 (381)
195 KOG1785 Tyrosine kinase negati 89.4 0.21 4.6E-06 58.4 2.3 48 1089-1136 365-413 (563)
196 PRK14873 primosome assembly pr 88.9 0.93 2E-05 59.0 7.9 55 759-816 190-251 (665)
197 COG5220 TFB3 Cdk activating ki 88.8 0.13 2.8E-06 56.5 0.1 51 1094-1144 11-67 (314)
198 PRK08074 bifunctional ATP-depe 88.6 1.4 3.1E-05 59.8 9.7 104 1257-1362 751-888 (928)
199 PRK07246 bifunctional ATP-depe 88.4 2.7 5.9E-05 56.3 11.9 101 1257-1362 646-778 (820)
200 COG5222 Uncharacterized conser 87.8 0.24 5.1E-06 56.0 1.3 43 1094-1138 275-318 (427)
201 PF13604 AAA_30: AAA domain; P 87.8 4.9 0.00011 44.4 11.7 39 887-927 94-133 (196)
202 KOG2879 Predicted E3 ubiquitin 87.6 0.32 6.9E-06 55.0 2.2 47 1091-1139 237-285 (298)
203 PRK12902 secA preprotein trans 87.4 2.5 5.4E-05 55.8 10.2 102 643-818 82-187 (939)
204 TIGR00604 rad3 DNA repair heli 86.0 2.6 5.6E-05 55.7 9.7 83 1257-1341 521-618 (705)
205 PRK11747 dinG ATP-dependent DN 85.8 4.6 0.0001 53.3 11.8 75 1260-1339 536-616 (697)
206 COG5540 RING-finger-containing 85.8 0.32 7E-06 55.4 1.0 45 1094-1140 324-371 (374)
207 COG5152 Uncharacterized conser 85.4 0.33 7.2E-06 52.0 0.8 37 1092-1128 195-231 (259)
208 KOG0347 RNA helicase [RNA proc 84.8 1.5 3.2E-05 54.2 6.0 57 760-817 266-325 (731)
209 KOG4150 Predicted ATP-dependen 84.6 4.4 9.6E-05 50.1 9.7 98 1257-1356 524-629 (1034)
210 PRK10875 recD exonuclease V su 83.9 7.4 0.00016 50.4 12.0 41 885-927 264-304 (615)
211 KOG0340 ATP-dependent RNA heli 83.7 8.1 0.00017 45.9 10.9 58 760-818 78-138 (442)
212 KOG2177 Predicted E3 ubiquitin 83.6 0.45 9.7E-06 54.8 0.9 42 1093-1137 13-54 (386)
213 PF07517 SecA_DEAD: SecA DEAD- 83.3 3.8 8.2E-05 47.6 8.2 101 644-818 75-179 (266)
214 KOG1803 DNA helicase [Replicat 83.2 3.2 6.9E-05 52.2 7.9 43 643-691 182-224 (649)
215 PRK08074 bifunctional ATP-depe 81.3 7.6 0.00016 53.0 11.3 39 645-686 256-294 (928)
216 TIGR01447 recD exodeoxyribonuc 81.3 9.6 0.00021 49.2 11.6 40 886-927 259-298 (586)
217 smart00491 HELICc2 helicase su 81.2 4.1 9E-05 42.8 7.0 68 1270-1339 3-80 (142)
218 PF06862 DUF1253: Protein of u 80.6 14 0.00029 46.0 12.0 125 1257-1382 299-430 (442)
219 PF02399 Herpes_ori_bp: Origin 80.1 6.6 0.00014 51.5 9.5 98 1257-1363 281-384 (824)
220 TIGR01448 recD_rel helicase, p 78.7 14 0.00029 49.1 12.1 40 886-927 416-455 (720)
221 PF09848 DUF2075: Uncharacteri 78.5 7.7 0.00017 46.9 9.1 16 885-900 82-97 (352)
222 KOG1814 Predicted E3 ubiquitin 77.8 1.5 3.2E-05 52.4 2.5 58 1085-1142 176-243 (445)
223 PF12678 zf-rbx1: RING-H2 zinc 77.3 1.5 3.2E-05 40.7 2.0 39 1094-1133 20-71 (73)
224 PF02399 Herpes_ori_bp: Origin 77.2 14 0.0003 48.7 11.1 38 887-924 143-190 (824)
225 PRK07246 bifunctional ATP-depe 76.7 10 0.00022 51.0 10.2 41 645-688 244-284 (820)
226 KOG0802 E3 ubiquitin ligase [P 76.4 0.96 2.1E-05 57.8 0.6 51 1092-1145 290-345 (543)
227 PRK07003 DNA polymerase III su 76.3 40 0.00086 44.6 14.7 58 886-945 119-179 (830)
228 KOG0329 ATP-dependent RNA heli 76.3 1.5 3.2E-05 49.4 1.9 68 1314-1383 302-369 (387)
229 KOG4628 Predicted E3 ubiquitin 75.9 1.5 3.3E-05 52.0 2.0 48 1094-1143 230-280 (348)
230 PF05876 Terminase_GpA: Phage 75.9 12 0.00027 48.0 10.3 50 637-691 7-56 (557)
231 KOG2660 Locus-specific chromos 74.8 1 2.2E-05 52.6 0.1 45 1094-1141 16-61 (331)
232 KOG4159 Predicted E3 ubiquitin 73.5 1.6 3.5E-05 53.1 1.4 47 1092-1141 83-129 (398)
233 KOG3800 Predicted E3 ubiquitin 73.5 1.9 4.1E-05 49.5 1.9 48 1095-1144 2-54 (300)
234 PF06733 DEAD_2: DEAD_2; Inte 72.4 2.1 4.6E-05 46.1 2.0 17 802-818 116-132 (174)
235 KOG0922 DEAH-box RNA helicase 72.4 20 0.00043 45.9 10.4 46 886-935 163-216 (674)
236 KOG4692 Predicted E3 ubiquitin 72.4 1.8 3.9E-05 50.3 1.4 34 1094-1127 423-456 (489)
237 COG1643 HrpA HrpA-like helicas 71.5 30 0.00064 46.4 12.3 20 671-690 68-87 (845)
238 KOG0926 DEAH-box RNA helicase 71.2 16 0.00035 47.5 9.2 21 670-690 273-293 (1172)
239 PHA02533 17 large terminase pr 70.9 40 0.00087 43.2 13.0 42 643-691 56-97 (534)
240 KOG0344 ATP-dependent RNA heli 69.8 4.4 9.5E-05 50.8 4.0 36 647-689 159-194 (593)
241 KOG1813 Predicted E3 ubiquitin 69.5 2.4 5.1E-05 48.8 1.5 40 1092-1132 240-279 (313)
242 TIGR02881 spore_V_K stage V sp 69.2 77 0.0017 36.5 13.9 19 671-689 45-63 (261)
243 PF14447 Prok-RING_4: Prokaryo 69.0 2.7 5.9E-05 36.7 1.4 44 1094-1142 8-51 (55)
244 KOG1805 DNA replication helica 68.1 34 0.00073 45.7 11.3 40 645-690 668-707 (1100)
245 KOG0922 DEAH-box RNA helicase 67.7 21 0.00045 45.8 9.2 112 1257-1371 257-392 (674)
246 KOG0297 TNF receptor-associate 66.2 3.1 6.7E-05 51.0 1.7 45 1094-1141 22-67 (391)
247 PF13401 AAA_22: AAA domain; P 63.9 5.5 0.00012 40.1 2.8 35 888-924 89-125 (131)
248 TIGR00631 uvrb excinuclease AB 62.4 32 0.00069 45.2 10.0 67 650-782 13-80 (655)
249 PRK14960 DNA polymerase III su 61.6 1E+02 0.0022 40.5 13.8 57 886-944 118-177 (702)
250 PRK08769 DNA polymerase III su 61.3 1.2E+02 0.0026 36.3 13.7 48 645-692 3-50 (319)
251 smart00489 DEXDc3 DEAD-like he 59.0 4.6 0.0001 47.5 1.4 41 647-690 9-49 (289)
252 smart00488 DEXDc2 DEAD-like he 59.0 4.6 0.0001 47.5 1.4 41 647-690 9-49 (289)
253 PRK14958 DNA polymerase III su 58.9 1.3E+02 0.0028 38.4 14.3 57 886-944 119-178 (509)
254 TIGR02562 cas3_yersinia CRISPR 58.6 2.2E+02 0.0048 39.3 16.4 44 646-689 408-452 (1110)
255 KOG1133 Helicase of the DEAD s 57.6 3.7 8.1E-05 52.2 0.3 81 1258-1340 629-721 (821)
256 PRK14956 DNA polymerase III su 57.3 1.2E+02 0.0026 38.3 13.2 49 886-936 121-172 (484)
257 KOG4265 Predicted E3 ubiquitin 57.1 4.4 9.6E-05 48.0 0.8 46 1093-1141 290-336 (349)
258 KOG0826 Predicted E3 ubiquitin 55.8 4.7 0.0001 47.0 0.7 47 1092-1139 299-346 (357)
259 KOG1039 Predicted E3 ubiquitin 55.7 5.6 0.00012 47.6 1.3 45 1093-1139 161-219 (344)
260 KOG4739 Uncharacterized protei 55.4 5.5 0.00012 44.9 1.1 45 1094-1143 4-50 (233)
261 PF12340 DUF3638: Protein of u 54.9 35 0.00076 38.8 7.4 43 645-691 22-64 (229)
262 KOG3039 Uncharacterized conser 54.5 6.2 0.00013 44.2 1.3 32 1094-1125 44-75 (303)
263 PRK14949 DNA polymerase III su 52.6 1.6E+02 0.0035 40.0 13.8 57 886-944 119-178 (944)
264 KOG0920 ATP-dependent RNA heli 51.0 28 0.0006 46.8 6.6 109 1257-1371 412-546 (924)
265 KOG0924 mRNA splicing factor A 50.2 29 0.00063 44.5 6.2 106 1269-1377 578-705 (1042)
266 TIGR03117 cas_csf4 CRISPR-asso 50.1 1E+02 0.0023 40.3 11.4 40 758-797 47-89 (636)
267 TIGR03420 DnaA_homol_Hda DnaA 48.8 1.5E+02 0.0032 32.9 11.3 38 889-926 93-134 (226)
268 KOG0329 ATP-dependent RNA heli 48.1 43 0.00094 38.2 6.6 60 759-818 112-174 (387)
269 KOG0337 ATP-dependent RNA heli 47.8 27 0.00058 42.6 5.2 108 759-924 92-205 (529)
270 PRK14962 DNA polymerase III su 47.6 1.5E+02 0.0032 37.5 12.1 41 648-691 19-59 (472)
271 PRK11747 dinG ATP-dependent DN 47.3 12 0.00027 49.3 2.7 42 645-686 24-67 (697)
272 PRK14961 DNA polymerase III su 47.2 2.7E+02 0.0058 33.9 13.9 21 671-691 41-61 (363)
273 KOG2817 Predicted E3 ubiquitin 47.2 9.9 0.00021 45.7 1.6 46 1092-1139 333-383 (394)
274 KOG1571 Predicted E3 ubiquitin 46.6 8.1 0.00018 45.9 0.7 43 1092-1140 304-346 (355)
275 KOG0950 DNA polymerase theta/e 46.2 51 0.0011 44.1 7.7 55 760-817 272-327 (1008)
276 KOG2932 E3 ubiquitin ligase in 45.7 10 0.00022 43.8 1.4 43 1093-1140 90-133 (389)
277 PHA02544 44 clamp loader, smal 44.9 2.7E+02 0.0058 32.8 13.3 39 888-926 102-142 (316)
278 PRK08691 DNA polymerase III su 44.9 3E+02 0.0064 36.6 14.2 57 886-944 119-178 (709)
279 PRK07994 DNA polymerase III su 44.6 2.5E+02 0.0054 37.0 13.6 51 1354-1412 584-636 (647)
280 COG1643 HrpA HrpA-like helicas 43.2 51 0.0011 44.3 7.3 112 1258-1372 259-390 (845)
281 TIGR02880 cbbX_cfxQ probable R 43.0 47 0.001 39.0 6.4 21 670-690 60-80 (284)
282 KOG0950 DNA polymerase theta/e 42.4 28 0.0006 46.4 4.6 106 1285-1395 525-636 (1008)
283 KOG1645 RING-finger-containing 41.7 9.7 0.00021 45.7 0.4 56 1094-1151 5-66 (463)
284 PF13177 DNA_pol3_delta2: DNA 41.5 4.7E+02 0.01 27.9 13.5 43 651-693 2-44 (162)
285 PF13607 Succ_CoA_lig: Succiny 41.3 1.1E+02 0.0024 32.2 8.0 85 1260-1365 3-89 (138)
286 KOG0346 RNA helicase [RNA proc 40.5 40 0.00087 41.3 5.2 60 760-819 96-159 (569)
287 PRK05298 excinuclease ABC subu 40.0 1.3E+02 0.0027 39.8 10.2 71 645-781 11-82 (652)
288 KOG0828 Predicted E3 ubiquitin 39.9 12 0.00027 45.7 0.9 45 1093-1139 571-632 (636)
289 COG0464 SpoVK ATPases of the A 39.3 53 0.0011 41.6 6.5 44 647-690 250-298 (494)
290 PF04641 Rtf2: Rtf2 RING-finge 39.2 20 0.00042 41.6 2.4 51 1092-1146 112-166 (260)
291 cd03028 GRX_PICOT_like Glutare 39.1 93 0.002 29.8 6.7 46 1257-1302 6-57 (90)
292 TIGR00365 monothiol glutaredox 38.8 92 0.002 30.4 6.7 58 1257-1314 10-73 (97)
293 PRK05580 primosome assembly pr 38.3 1.7E+02 0.0036 38.9 10.9 77 1257-1336 189-266 (679)
294 KOG0951 RNA helicase BRR2, DEA 38.2 1.3E+02 0.0029 41.6 9.7 59 758-817 1187-1246(1674)
295 COG5243 HRD1 HRD ubiquitin lig 37.9 25 0.00054 41.8 2.8 47 1090-1139 284-343 (491)
296 KOG1734 Predicted RING-contain 37.8 12 0.00026 42.6 0.4 52 1094-1147 225-287 (328)
297 PRK12902 secA preprotein trans 37.7 2.3E+02 0.005 38.4 11.7 64 1257-1323 438-502 (939)
298 KOG3039 Uncharacterized conser 37.2 16 0.00034 41.1 1.1 38 1094-1132 222-263 (303)
299 PF12861 zf-Apc11: Anaphase-pr 36.9 28 0.0006 33.4 2.5 44 1096-1141 35-82 (85)
300 KOG1812 Predicted E3 ubiquitin 36.6 18 0.0004 44.3 1.7 53 1093-1145 146-207 (384)
301 TIGR00595 priA primosomal prot 36.6 1.7E+02 0.0036 37.4 10.2 77 1257-1336 24-101 (505)
302 PRK14959 DNA polymerase III su 36.1 4.5E+02 0.0097 34.6 13.9 39 650-691 23-61 (624)
303 PRK05896 DNA polymerase III su 35.1 5E+02 0.011 34.0 14.0 23 669-691 39-61 (605)
304 PRK14969 DNA polymerase III su 35.1 3.9E+02 0.0085 34.4 13.2 40 649-691 22-61 (527)
305 KOG0920 ATP-dependent RNA heli 35.0 2.6E+02 0.0057 38.1 11.8 42 644-692 171-212 (924)
306 PRK14964 DNA polymerase III su 34.9 3.9E+02 0.0085 34.1 12.9 38 650-690 20-57 (491)
307 KOG4275 Predicted E3 ubiquitin 34.7 13 0.00027 42.9 -0.1 28 1094-1121 301-329 (350)
308 PF13173 AAA_14: AAA domain 34.4 42 0.00092 34.1 3.7 39 888-927 63-101 (128)
309 TIGR02768 TraA_Ti Ti-type conj 34.3 2.4E+02 0.0053 37.8 11.6 39 645-689 351-389 (744)
310 cd03418 GRX_GRXb_1_3_like Glut 33.7 1.4E+02 0.0029 27.0 6.6 57 1260-1316 1-58 (75)
311 PRK10917 ATP-dependent DNA hel 33.6 1.2E+02 0.0026 40.2 8.6 77 1257-1334 309-389 (681)
312 PHA03096 p28-like protein; Pro 32.0 44 0.00095 39.3 3.7 34 1094-1127 179-220 (284)
313 CHL00181 cbbX CbbX; Provisiona 32.0 1.1E+02 0.0023 36.2 7.0 20 671-690 62-81 (287)
314 TIGR00604 rad3 DNA repair heli 31.4 58 0.0013 43.2 5.2 43 646-691 10-52 (705)
315 smart00488 DEXDc2 DEAD-like he 31.0 75 0.0016 37.4 5.5 16 803-818 209-224 (289)
316 smart00489 DEXDc3 DEAD-like he 31.0 75 0.0016 37.4 5.5 16 803-818 209-224 (289)
317 PF13245 AAA_19: Part of AAA d 31.0 1E+02 0.0022 28.9 5.2 20 672-691 14-33 (76)
318 KOG0952 DNA/RNA helicase MER3/ 30.1 88 0.0019 42.4 6.2 58 757-816 973-1031(1230)
319 COG0553 HepA Superfamily II DN 29.9 7.5 0.00016 52.2 -3.4 80 1261-1357 445-524 (866)
320 PRK14953 DNA polymerase III su 29.8 6.7E+02 0.015 31.9 13.9 20 671-690 41-60 (486)
321 PF14570 zf-RING_4: RING/Ubox 29.0 46 0.001 28.6 2.3 42 1096-1139 1-46 (48)
322 PRK05707 DNA polymerase III su 28.1 3.3E+02 0.0072 32.8 10.3 44 646-692 3-46 (328)
323 KOG1815 Predicted E3 ubiquitin 27.8 35 0.00075 42.7 2.1 52 1093-1144 70-129 (444)
324 TIGR02562 cas3_yersinia CRISPR 26.8 2E+02 0.0043 39.7 8.6 47 1310-1359 838-884 (1110)
325 PRK11054 helD DNA helicase IV; 26.8 1.1E+02 0.0025 40.4 6.6 38 645-691 195-232 (684)
326 PLN03025 replication factor C 26.7 1.1E+02 0.0024 36.3 6.1 59 886-944 99-158 (319)
327 cd05563 PTS_IIB_ascorbate PTS_ 26.7 1.6E+02 0.0034 27.7 5.9 51 760-814 2-54 (86)
328 TIGR00643 recG ATP-dependent D 26.6 1.6E+02 0.0035 38.6 8.0 76 1257-1333 283-362 (630)
329 PRK14087 dnaA chromosomal repl 26.4 2.3E+02 0.005 35.6 8.9 37 887-923 207-247 (450)
330 PHA00673 acetyltransferase dom 26.0 1E+02 0.0023 33.0 4.9 44 887-930 88-134 (154)
331 cd05566 PTS_IIB_galactitol PTS 25.8 1.3E+02 0.0028 28.6 5.2 55 759-815 2-58 (89)
332 PF00580 UvrD-helicase: UvrD/R 25.8 1.3E+02 0.0029 34.7 6.4 36 647-691 1-36 (315)
333 KOG0925 mRNA splicing factor A 25.2 55 0.0012 40.7 2.9 52 885-940 158-217 (699)
334 PRK05563 DNA polymerase III su 25.0 8.5E+02 0.018 31.6 13.8 20 671-690 41-60 (559)
335 KOG0825 PHD Zn-finger protein 24.8 16 0.00035 46.9 -1.5 44 1096-1142 126-172 (1134)
336 COG4581 Superfamily II RNA hel 24.8 2.7E+02 0.0058 38.5 9.4 77 1288-1366 450-534 (1041)
337 COG1875 NYN ribonuclease and A 24.8 58 0.0013 39.4 3.0 38 888-927 353-390 (436)
338 PF02302 PTS_IIB: PTS system, 24.7 88 0.0019 29.5 3.8 55 760-816 2-58 (90)
339 KOG0924 mRNA splicing factor A 24.2 4.4E+02 0.0094 34.7 10.3 20 671-690 374-393 (1042)
340 KOG4367 Predicted Zn-finger pr 24.2 33 0.00073 41.3 1.0 32 1095-1126 6-37 (699)
341 cd00133 PTS_IIB PTS_IIB: subun 23.8 1.6E+02 0.0034 26.7 5.3 53 760-815 2-56 (84)
342 KOG1133 Helicase of the DEAD s 22.6 4.3E+02 0.0094 34.8 10.0 31 783-818 306-336 (821)
343 PRK14974 cell division protein 21.8 4.6E+02 0.0099 31.8 9.8 45 887-932 223-272 (336)
344 COG0626 MetC Cystathionine bet 20.9 1.6E+02 0.0034 36.5 5.8 78 1256-1358 100-178 (396)
345 COG4646 DNA methylase [Transcr 20.8 53 0.0011 40.4 1.7 32 913-944 472-503 (637)
346 PRK07993 DNA polymerase III su 20.4 5.4E+02 0.012 31.1 10.1 48 646-693 2-49 (334)
347 TIGR00614 recQ_fam ATP-depende 20.2 7.3E+02 0.016 31.3 11.8 63 1258-1321 51-113 (470)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-103 Score=888.81 Aligned_cols=576 Identities=42% Similarity=0.711 Sum_probs=477.7
Q ss_pred CCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000575 636 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 715 (1413)
Q Consensus 636 ~~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 715 (1413)
+.+|.+ +.+||+|||+++|+|+..+|.++. .|||||||||+|||+|+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 456776 578999999999999999999875 8999999999999999999998621
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000575 716 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 795 (1413)
Q Consensus 716 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 795 (1413)
..+|||||||.-.+.||.+||.+|.. +.+++++|||.+
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999998865 789999999999
Q ss_pred CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccc
Q 000575 796 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 875 (1413)
Q Consensus 796 r~k~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~ 875 (1413)
|.++..+|..||+|+|||.++.+++.++. +++ +|| . + .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~Gf---------rrK--------n-----g-----v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------YGF---------RRK--------N-----G-----V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------ccc---------ccc--------C-----C-----c
Confidence 99999999999999999999988775531 111 111 0 0 1
Q ss_pred ccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchH-------
Q 000575 876 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 948 (1413)
Q Consensus 876 ~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~------- 948 (1413)
+.-+++|+.+.|.||||||||.||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||..+-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 2235789999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred ------------------------HHHhhhccCCCCCch-----hhHHHHHHHHhhhheeeccccccCCCCccCCCCcEE
Q 000575 949 ------------------------SFCSMIKVPISKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 999 (1413)
Q Consensus 949 ------------------------~F~~~~~~pi~~~~~-----~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~ 999 (1413)
.|......||.+... .++...+.+|+.||+||||-.-.+. +-|||+.+
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdD---LgLPPRiv 462 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADD---LGLPPRIV 462 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccc---cCCCccce
Confidence 122333455654422 2356789999999999998654432 57999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000575 1000 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1079 (1413)
Q Consensus 1000 ~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~ 1079 (1413)
.+.+--|+.+|.++|+.|...++..+..+..+|.+..+|++|+.+|.||||+++||.|+.... ...++.
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~ 531 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD 531 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999875421 111211
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhcc----CCCCCCCccccccccccchhhhhhccccc
Q 000575 1080 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1155 (1413)
Q Consensus 1080 e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~----~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~ 1155 (1413)
+ .....+|.+|.++.++++.+.|.|.||+-|+.+++.. ..-.||. |...|..+.-- .......+
T Consensus 532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~--C~i~LsiDlse-~alek~~l 599 (791)
T KOG1002|consen 532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPV--CHIGLSIDLSE-PALEKTDL 599 (791)
T ss_pred c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcc--ccccccccccc-hhhhhcch
Confidence 1 1234789999999999999999999999999888644 2346884 87776654110 00000000
Q ss_pred ccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000575 1156 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1235 (1413)
Q Consensus 1156 ~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1235 (1413)
.. . ...-.-.......|..|.||+++.+.|.-+.+.
T Consensus 600 ~~-F----------k~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r--------------------------------- 635 (791)
T KOG1002|consen 600 KG-F----------KASSILNRINMDDWQSSTKIEALVEELYFLRER--------------------------------- 635 (791)
T ss_pred hh-h----------hhHHHhhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence 00 0 000000012234567789999999988875321
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000575 1236 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1315 (1413)
Q Consensus 1236 ~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~ 1315 (1413)
....|.|||||||+|||+|+..|.+.|+.++.+.|+|++++|.++|+.|.++++++||||
T Consensus 636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 145789999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000575 1316 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1395 (1413)
Q Consensus 1316 StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~ 1395 (1413)
|++|||+.|||+.|++|++|||||||+++.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+++.+|+++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~ 775 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE 775 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CcccccCCHHHHHHhhc
Q 000575 1396 GGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1396 ~~~~~~lt~~dL~~LF~ 1412 (1413)
...+|+.+|+++||.
T Consensus 776 --Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 776 --AISKLTEEDMQFLFN 790 (791)
T ss_pred --HHHhcCHHHHHHHhc
Confidence 467999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-87 Score=788.33 Aligned_cols=545 Identities=39% Similarity=0.639 Sum_probs=430.5
Q ss_pred CCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000575 636 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 715 (1413)
Q Consensus 636 ~~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 715 (1413)
..+|.| ++++|+|||+.|+.||+.||... +.|||||||||||||+++|+||+..+... ..
T Consensus 316 te~P~g-~~v~LmpHQkaal~Wl~wRE~q~--~~GGILaddmGLGKTlsmislil~qK~~~------------~~----- 375 (901)
T KOG4439|consen 316 TETPDG-LKVELMPHQKAALRWLLWRESQP--PSGGILADDMGLGKTLSMISLILHQKAAR------------KA----- 375 (901)
T ss_pred cCCCCc-ceeecchhhhhhhhhhcccccCC--CCCcccccccccccchHHHHHHHHHHHHH------------Hh-----
Confidence 344555 68999999999999999999875 48999999999999999999998743210 00
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000575 716 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 795 (1413)
Q Consensus 716 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 795 (1413)
.......+.+||||||++|+.||..|+.+.+. ...|+|++|||.+
T Consensus 376 ----------------------------------~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~-~n~LsV~~~HG~n 420 (901)
T KOG4439|consen 376 ----------------------------------REKKGESASKTLIICPASLIHQWEAEVARRLE-QNALSVYLYHGPN 420 (901)
T ss_pred ----------------------------------hcccccccCCeEEeCcHHHHHHHHHHHHHHHh-hcceEEEEecCCc
Confidence 00001112259999999999999999999987 5689999999999
Q ss_pred -CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcc
Q 000575 796 -RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 874 (1413)
Q Consensus 796 -r~k~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~ 874 (1413)
|.-.+..|++||||||||..+.+. ..++ .+
T Consensus 421 ~r~i~~~~L~~YDvViTTY~lva~~--------~~~e-~~---------------------------------------- 451 (901)
T KOG4439|consen 421 KREISAKELRKYDVVITTYNLVANK--------PDDE-LE---------------------------------------- 451 (901)
T ss_pred cccCCHHHHhhcceEEEeeeccccC--------Cchh-hh----------------------------------------
Confidence 777889999999999999998751 0111 00
Q ss_pred cccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhh
Q 000575 875 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 954 (1413)
Q Consensus 875 ~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~ 954 (1413)
.....+||.+|.|.||||||||.|||++|+.+.|++.|++.+|||||||||||++.|+|+|++||+..||.+...|.+++
T Consensus 452 ~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i 531 (901)
T KOG4439|consen 452 EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENI 531 (901)
T ss_pred cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhc
Confidence 00114789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHH----
Q 000575 955 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA---- 1030 (1413)
Q Consensus 955 ~~pi~~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~---- 1030 (1413)
..+- ..+-.++.-+.+++||||||+.+..++++..||++.++++.++|+..|...|+.+...++..++.++.
T Consensus 532 ~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~ 607 (901)
T KOG4439|consen 532 DNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRED 607 (901)
T ss_pred cCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5432 34457888899999999999999888999999999999999999999999999998887766655332
Q ss_pred --------------------------------cccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhch
Q 000575 1031 --------------------------------AGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLP 1078 (1413)
Q Consensus 1031 --------------------------------~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~ 1078 (1413)
+|.......+||.+|+||||+|+||.+.+...+..... +..-..
T Consensus 608 ~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~----~~g~~~ 683 (901)
T KOG4439|consen 608 RNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQ----MNGGDD 683 (901)
T ss_pred hccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhh----hcCcch
Confidence 12223345679999999999999997665432211100 000000
Q ss_pred -HHHHHHH--HHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhccccc
Q 000575 1079 -QERQMYL--LNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSL 1155 (1413)
Q Consensus 1079 -~e~~~~l--l~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~ 1155 (1413)
.+.+..+ +..++.. ..|.| ..-+|.
T Consensus 684 sde~~~e~~~l~el~k~--------------~~T~~--------------------~~D~~e------------------ 711 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKN--------------DETDC--------------------SDDNCE------------------ 711 (901)
T ss_pred hhhhhhhhhHHHhhhhc--------------ccccc--------------------cccccc------------------
Confidence 0001000 1111100 00111 110111
Q ss_pred ccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000575 1156 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1235 (1413)
Q Consensus 1156 ~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1235 (1413)
+.|....... ....+.+.|+...++.|+.+.
T Consensus 712 -------d~p~~~~~q~-------Fe~~r~S~Ki~~~l~~le~i~----------------------------------- 742 (901)
T KOG4439|consen 712 -------DLPTAFPDQA-------FEPDRPSCKIAMVLEILETIL----------------------------------- 742 (901)
T ss_pred -------cccccchhhh-------cccccchhHHHHHHHHHHHHh-----------------------------------
Confidence 0000000000 112235789998888888741
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEE
Q 000575 1236 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMI 1314 (1413)
Q Consensus 1236 ~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~i~VLL 1314 (1413)
....+|+||.|||+.+|++++..|...|..|..++|....++|+.+|+.||... ..+|||
T Consensus 743 -------------------~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 743 -------------------TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred -------------------hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 125799999999999999999999999999999999999999999999999865 499999
Q ss_pred eeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000575 1315 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1394 (1413)
Q Consensus 1315 ~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~ 1394 (1413)
+|+.|||+||||+.|||+|++|++|||+.|+||.+||+|+||+++|+||||++++|||+||..+|++|..++..++.+..
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred cCcccccCCHHHHHHhhcC
Q 000575 1395 TGGQQTRLTVDDLNYLFMV 1413 (1413)
Q Consensus 1395 ~~~~~~~lt~~dL~~LF~~ 1413 (1413)
+ ...++||..|||.||++
T Consensus 884 t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 884 T-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred c-cccccccHHHHHHHhCC
Confidence 4 46889999999999985
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.3e-85 Score=774.94 Aligned_cols=459 Identities=33% Similarity=0.535 Sum_probs=395.0
Q ss_pred CCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000575 638 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 717 (1413)
Q Consensus 638 ~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 717 (1413)
.|.++....|++||.+||+||.++.... -+||||||||||||+|+||++.+.+..
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~~~---------------------- 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLKGR---------------------- 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHHHh----------------------
Confidence 5666666889999999999999988755 469999999999999999999875421
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000575 718 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 797 (1413)
Q Consensus 718 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 797 (1413)
..-.+|.||+||.|++.+|.+|+++|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1124789999999999999999999987 8999999999744
Q ss_pred C-----CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000575 798 K-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 872 (1413)
Q Consensus 798 k-----~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~ 872 (1413)
+ +...-..+||+||||++..++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 3 222224899999999998642
Q ss_pred cccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHh
Q 000575 873 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 952 (1413)
Q Consensus 873 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~ 952 (1413)
.+.|.++.|.++||||||+|||.++..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|.+...|.+
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 23478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000575 953 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1032 (1413)
Q Consensus 953 ~~~~pi~~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g 1032 (1413)
||......+....+.+|+.+|++|+|||.|.+|.. .|||+.+..+++.|+..|+++|..+...-... ....+
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~---~n~~~ 427 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDA---LNGEG 427 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchh---hcccc
Confidence 99887766777789999999999999999999987 79999999999999999999999886443222 22222
Q ss_pred cccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccC
Q 000575 1033 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1112 (1413)
Q Consensus 1033 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~Cg 1112 (1413)
. .....++..+|+||++|+||+|+.+.+..
T Consensus 428 ~--~~k~kL~NI~mQLRKccnHPYLF~g~ePg------------------------------------------------ 457 (971)
T KOG0385|consen 428 K--GEKTKLQNIMMQLRKCCNHPYLFDGAEPG------------------------------------------------ 457 (971)
T ss_pred c--chhhHHHHHHHHHHHhcCCccccCCCCCC------------------------------------------------
Confidence 2 13556788899999999999998653210
Q ss_pred cccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHH
Q 000575 1113 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1192 (1413)
Q Consensus 1113 HifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~al 1192 (1413)
|.+ ...+.....++|+..|
T Consensus 458 ----------------------------------------------------~py---------ttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 458 ----------------------------------------------------PPY---------TTDEHLVTNSGKMLVL 476 (971)
T ss_pred ----------------------------------------------------CCC---------CcchHHHhcCcceehH
Confidence 000 0011222347777777
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000575 1193 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1272 (1413)
Q Consensus 1193 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~Ld 1272 (1413)
-.+|..+ +..|+|||||||||.|||
T Consensus 477 DkLL~~L-------------------------------------------------------k~~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 477 DKLLPKL-------------------------------------------------------KEQGHRVLIFSQMTRMLD 501 (971)
T ss_pred HHHHHHH-------------------------------------------------------HhCCCeEEEeHHHHHHHH
Confidence 6666653 337999999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000575 1273 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1351 (1413)
Q Consensus 1273 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRv 1351 (1413)
+|+.++.-+++.|+||||+++.++|.++|+.||.++ +..|||+||+|||+||||++|++||+||..|||....||++|+
T Consensus 502 ILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 502 ILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999975 6999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 000575 1352 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1393 (1413)
Q Consensus 1352 hRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d 1393 (1413)
|||||+++|.||||++++||||+|+++...|.++-..+++.+
T Consensus 582 HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999998776
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-82 Score=756.22 Aligned_cols=471 Identities=30% Similarity=0.496 Sum_probs=398.0
Q ss_pred CCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccc
Q 000575 641 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 720 (1413)
Q Consensus 641 g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~ 720 (1413)
|.+...|++||+.||.||++.... ..|||||||||||||+|+|++++..+..
T Consensus 200 g~I~~~Lf~yQreGV~WL~~L~~q---~~GGILgDeMGLGKTIQiisFLaaL~~S------------------------- 251 (923)
T KOG0387|consen 200 GFIWSKLFPYQREGVQWLWELYCQ---RAGGILGDEMGLGKTIQIISFLAALHHS------------------------- 251 (923)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhc---cCCCeecccccCccchhHHHHHHHHhhc-------------------------
Confidence 346678999999999999998774 3799999999999999999999875432
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--
Q 000575 721 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-- 798 (1413)
Q Consensus 721 ~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-- 798 (1413)
+...+|+|||||++|+.||.+|+++|.+ .++|.+|||.....
T Consensus 252 ---------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~s~~r~ 295 (923)
T KOG0387|consen 252 ---------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTGSGARY 295 (923)
T ss_pred ---------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCCccccc
Confidence 0123679999999999999999999987 79999999987631
Q ss_pred -------------CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCcccccc
Q 000575 799 -------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 865 (1413)
Q Consensus 799 -------------~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~ 865 (1413)
.........|+||||+.++..
T Consensus 296 ~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---------------------------------------------- 329 (923)
T KOG0387|consen 296 DASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---------------------------------------------- 329 (923)
T ss_pred ccchhhhhhhhhheeeecccCcEEEEehhhhccc----------------------------------------------
Confidence 112223556999999988631
Q ss_pred CCCCCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCcc
Q 000575 866 QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 945 (1413)
Q Consensus 866 ~kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~ 945 (1413)
..++..+.|++||+||+|+|||++|+.+.+|..|++.+|++||||||||++.|||+++.|+.|+.++
T Consensus 330 -------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lg 396 (923)
T KOG0387|consen 330 -------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLG 396 (923)
T ss_pred -------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCccc
Confidence 1247788999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhhccCCCCCchhh------------HHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHH
Q 000575 946 VYKSFCSMIKVPISKNPVKG------------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDF 1013 (1413)
Q Consensus 946 ~~~~F~~~~~~pi~~~~~~~------------~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~ 1013 (1413)
+...|...|..||..+.... ...|+.++.|++|||+|.+|.. ..||.+.+.++.|.||+.||.+
T Consensus 397 t~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~QR~~ 472 (923)
T KOG0387|consen 397 TLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKLQRRL 472 (923)
T ss_pred chHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHHHHHH
Confidence 99999999999998764321 3468999999999999999975 5799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhc
Q 000575 1014 YSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASL 1093 (1413)
Q Consensus 1014 Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~ 1093 (1413)
|+++..... +..+. .| ..++|..+.-||++||||.|+.+.....
T Consensus 473 Y~~fl~s~~--v~~i~-ng-----~~~~l~Gi~iLrkICnHPdll~~~~~~~---------------------------- 516 (923)
T KOG0387|consen 473 YQRFLNSSE--VNKIL-NG-----KRNCLSGIDILRKICNHPDLLDRRDEDE---------------------------- 516 (923)
T ss_pred HHHHhhhHH--HHHHH-cC-----CccceechHHHHhhcCCcccccCccccc----------------------------
Confidence 999865432 12222 12 1346777788999999998875421000
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCccc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL 1173 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~ 1173 (1413)
...
T Consensus 517 --------------------------------------------------------------------~~~--------- 519 (923)
T KOG0387|consen 517 --------------------------------------------------------------------KQG--------- 519 (923)
T ss_pred --------------------------------------------------------------------ccC---------
Confidence 000
Q ss_pred ccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccc
Q 000575 1174 VEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDS 1253 (1413)
Q Consensus 1174 ~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1253 (1413)
+..+..+..+.|++.+..+|....
T Consensus 520 ---~D~~g~~k~sGKm~vl~~ll~~W~----------------------------------------------------- 543 (923)
T KOG0387|consen 520 ---PDYEGDPKRSGKMKVLAKLLKDWK----------------------------------------------------- 543 (923)
T ss_pred ---CCcCCChhhcchHHHHHHHHHHHh-----------------------------------------------------
Confidence 001123345889999999888742
Q ss_pred cccCCCeEEEEcccHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000575 1254 IKLGGEKAIVFSQWTKMLDLLEASLK-DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1254 ~~~~~~KvIIFSq~t~~LdlLe~~L~-~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V 1332 (1413)
..|.|+|+|+|...|||+|+..|. ..|+.|+|+||+++.+.|+.+|++||++..+.|||++|++||+|||||.||+|
T Consensus 544 --kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRV 621 (923)
T KOG0387|consen 544 --KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRV 621 (923)
T ss_pred --hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceE
Confidence 268899999999999999999999 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccc-CCHHHHHHhh
Q 000575 1333 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTR-LTVDDLNYLF 1411 (1413)
Q Consensus 1333 I~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~-lt~~dL~~LF 1411 (1413)
|+|||.|||.+..||..|+|||||||+|.||||++.+||||+||.+|--|+.+.+.++..- ++.| +...||..||
T Consensus 622 IIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p----~q~RfF~~~dl~dLF 697 (923)
T KOG0387|consen 622 IIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNP----EQRRFFKGNDLHDLF 697 (923)
T ss_pred EEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCH----HHhhhcccccHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998543 3444 6777899998
Q ss_pred cC
Q 000575 1412 MV 1413 (1413)
Q Consensus 1412 ~~ 1413 (1413)
.+
T Consensus 698 sl 699 (923)
T KOG0387|consen 698 SL 699 (923)
T ss_pred CC
Confidence 63
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.5e-82 Score=775.58 Aligned_cols=529 Identities=31% Similarity=0.495 Sum_probs=423.6
Q ss_pred hHHHHHHHHHhhccCCCCCCCCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCC
Q 000575 616 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 695 (1413)
Q Consensus 616 ~de~~~~~~~l~~l~~~~~e~~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~ 695 (1413)
..||.+++..+..-..|......| ++..||.||.+||+|+....+-+ .-||||||||||||+|+|+.++..+..
T Consensus 948 e~erkFLeqlldpski~~y~Ip~p---I~a~LRkYQqEGVnWLaFLnky~---LHGILcDDMGLGKTLQticilAsd~y~ 1021 (1549)
T KOG0392|consen 948 EEERKFLEQLLDPSKIPEYKIPVP---ISAKLRKYQQEGVNWLAFLNKYK---LHGILCDDMGLGKTLQTICILASDHYK 1021 (1549)
T ss_pred HHHHHHHHHhcCcccCCccccccc---hhHHHHHHHHhccHHHHHHHHhc---ccceeeccccccHHHHHHHHHHHHHHh
Confidence 356666666554434443333333 46789999999999999887744 459999999999999999999864422
Q ss_pred CCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHH
Q 000575 696 SFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 775 (1413)
Q Consensus 696 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~E 775 (1413)
+ +....+| ...|.|||||++|..+|+.|
T Consensus 1022 r-------------------------------~s~~~e~---------------------~~~PSLIVCPsTLtGHW~~E 1049 (1549)
T KOG0392|consen 1022 R-------------------------------RSESSEF---------------------NRLPSLIVCPSTLTGHWKSE 1049 (1549)
T ss_pred h-------------------------------cccchhh---------------------ccCCeEEECCchhhhHHHHH
Confidence 0 0011111 12468999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCC--CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccC
Q 000575 776 LRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKR 853 (1413)
Q Consensus 776 I~k~~~~~~~L~Vlvy~G~~--r~k~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~ 853 (1413)
+.++++ -|+|+.|-|.. |........+++|+||+|+++++++.
T Consensus 1050 ~~kf~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d-------------------------------- 1094 (1549)
T KOG0392|consen 1050 VKKFFP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD-------------------------------- 1094 (1549)
T ss_pred HHHhcc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--------------------------------
Confidence 999998 49999999886 44456677889999999999986531
Q ss_pred CCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHH
Q 000575 854 KCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 933 (1413)
Q Consensus 854 k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLy 933 (1413)
.|.++.|.++|+||+|-|||.+++.++++.+|++.+|++||||||||++.|||
T Consensus 1095 ---------------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1095 ---------------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELW 1147 (1549)
T ss_pred ---------------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHH
Confidence 16778999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCccchHHHHhhhccCCCCCc------------hhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEE
Q 000575 934 SYFRFLRYDPFAVYKSFCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1001 (1413)
Q Consensus 934 slL~FL~p~~f~~~~~F~~~~~~pi~~~~------------~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~v 1001 (1413)
+++.||+|+.++..+.|.++|.+||-... ..++..||+.+-|||+||+|.+|+. +||||.++.
T Consensus 1148 SLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQD 1222 (1549)
T KOG0392|consen 1148 SLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQD 1222 (1549)
T ss_pred HHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhh
Confidence 99999999999999999999999994321 1236778999999999999999998 899999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccch--HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000575 1002 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN--YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1079 (1413)
Q Consensus 1002 v~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~--~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~ 1079 (1413)
++|+|++.|+++|+.+.+..+.......+.+..... ..++++.|..+|+.|+||.|+.+.....+. .
T Consensus 1223 yyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la----~------- 1291 (1549)
T KOG0392|consen 1223 YYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLA----A------- 1291 (1549)
T ss_pred eeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHH----H-------
Confidence 999999999999999987744333333333332222 689999999999999999998653211100 0
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCC
Q 000575 1080 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQ 1159 (1413)
Q Consensus 1080 e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~ 1159 (1413)
++..|+| .+.++.
T Consensus 1292 ---------------------------i~~~l~~-------------------------------------~~~~LH--- 1304 (1549)
T KOG0392|consen 1292 ---------------------------IVSHLAH-------------------------------------FNSSLH--- 1304 (1549)
T ss_pred ---------------------------HHHHHHH-------------------------------------hhhhHH---
Confidence 0001111 000000
Q ss_pred CCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccc
Q 000575 1160 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNIS 1239 (1413)
Q Consensus 1160 ~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 1239 (1413)
....++|+.|+-++|.+- +.++....... ..
T Consensus 1305 ----------------------di~hspKl~AL~qLL~eC----------------------Gig~~~~~~~g-~~---- 1335 (1549)
T KOG0392|consen 1305 ----------------------DIQHSPKLSALKQLLSEC----------------------GIGNNSDSEVG-TP---- 1335 (1549)
T ss_pred ----------------------HhhhchhHHHHHHHHHHh----------------------CCCCCCccccc-Cc----
Confidence 011378999999998873 22222111110 00
Q ss_pred hhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhc---CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000575 1240 DENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1316 (1413)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~---gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~S 1316 (1413)
-...++|++||+||.+|+|+++.-|-+. .+.|.|+||+.++.+|.+++++||+||.+.|||++
T Consensus 1336 --------------s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1336 --------------SDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred --------------chhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 0126899999999999999999999765 67899999999999999999999999999999999
Q ss_pred ccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 000575 1317 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETG 1396 (1413)
Q Consensus 1317 tkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~ 1396 (1413)
|.+||+|||||.|++|||+|..|||++..||+||||||||||.|.|||||++||+||+|+.+|+-|...++.+++.+-
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN-- 1479 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN-- 1479 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred cccccCCHHHHHHhhc
Q 000575 1397 GQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1397 ~~~~~lt~~dL~~LF~ 1412 (1413)
..+..+..++|..||.
T Consensus 1480 asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1480 ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred ccccccCHHHHHHHhc
Confidence 4577788999999997
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.7e-82 Score=782.40 Aligned_cols=601 Identities=25% Similarity=0.405 Sum_probs=479.2
Q ss_pred ccCCCcccccccccchhhhhhhhcccccccccccCCCccccccCCCCCccCCCCCCCeEEEeccCCccccchhhhhhccc
Q 000575 489 PYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTL 568 (1413)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (1413)
+-...+++..+++.|+|+.+||.+|-.+++.|+. ++...|..+||.++++|=.-.-.....++.||-
T Consensus 241 tWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~ 307 (1373)
T KOG0384|consen 241 TWETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWR 307 (1373)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEec
Confidence 3456678888999999999999888889999987 578889999999999996555555699999999
Q ss_pred ccccccccccccccCCCccccccCCCCCCCCCCCCCCcCCCCCCCCchHHHHHHHHHhhccCCCCCCCCCCCCCcccCCc
Q 000575 569 SMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLL 648 (1413)
Q Consensus 569 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~l~~~~~e~~~P~g~l~~~L~ 648 (1413)
+|+|..|.|.......|....+...|..+......|..+..-...+. .++. +. ..|..+....|+
T Consensus 308 ~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp-----~~~K----le------~qp~~~~g~~LR 372 (1373)
T KOG0384|consen 308 GLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRP-----RFRK----LE------KQPEYKGGNELR 372 (1373)
T ss_pred CCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccch-----hHHH----hh------cCccccccchhh
Confidence 99999999999999999777776666655433333322222212211 1221 11 234444456899
Q ss_pred hHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000575 649 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 728 (1413)
Q Consensus 649 phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 728 (1413)
.||+.||+||+...... ..||||||||||||||+|+++.+....
T Consensus 373 dyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~--------------------------------- 416 (1373)
T KOG0384|consen 373 DYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS--------------------------------- 416 (1373)
T ss_pred hhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh---------------------------------
Confidence 99999999999865532 459999999999999999999664311
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------
Q 000575 729 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--------- 799 (1413)
Q Consensus 729 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~--------- 799 (1413)
..-.+|.|||||.|++.+|++|+..|. .+++++|||....+.
T Consensus 417 -------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~ 467 (1373)
T KOG0384|consen 417 -------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYH 467 (1373)
T ss_pred -------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHHHHHHHHHhee
Confidence 122478999999999999999999996 599999999864331
Q ss_pred -c-ccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccccc
Q 000575 800 -P-CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 877 (1413)
Q Consensus 800 -~-~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~ 877 (1413)
. ...-+++++||||+++..+
T Consensus 468 ~~~~~~lkf~~lltTye~~LkD---------------------------------------------------------- 489 (1373)
T KOG0384|consen 468 SSNTKKLKFNALLTTYEIVLKD---------------------------------------------------------- 489 (1373)
T ss_pred cCCccccccceeehhhHHHhcc----------------------------------------------------------
Confidence 1 2234799999999999642
Q ss_pred ccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccC
Q 000575 878 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP 957 (1413)
Q Consensus 878 ~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~p 957 (1413)
...|..++|..+++||||++||..+.++..+..++.++|+++||||+||++.|||+|++||+|+.|..+..|...+
T Consensus 490 -k~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~--- 565 (1373)
T KOG0384|consen 490 -KAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF--- 565 (1373)
T ss_pred -HhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh---
Confidence 1238889999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccch
Q 000575 958 ISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN 1037 (1413)
Q Consensus 958 i~~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~ 1037 (1413)
.......+..|+.+|+|+||||.|++|.+ .|||+.++++.|+||..|+++|..++.+.-..+ ..|....+
T Consensus 566 -~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~L----tKG~~g~~ 635 (1373)
T KOG0384|consen 566 -DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSAL----TKGAKGST 635 (1373)
T ss_pred -cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHH----hccCCCCC
Confidence 34556789999999999999999999988 899999999999999999999999876544332 33433333
Q ss_pred HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccch
Q 000575 1038 YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 1117 (1413)
Q Consensus 1038 ~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~ 1117 (1413)
.++|..++.||+||+||+|+++.+..- ....+.
T Consensus 636 -~~lLNimmELkKccNHpyLi~gaee~~------------~~~~~~---------------------------------- 668 (1373)
T KOG0384|consen 636 -PSLLNIMMELKKCCNHPYLIKGAEEKI------------LGDFRD---------------------------------- 668 (1373)
T ss_pred -chHHHHHHHHHHhcCCccccCcHHHHH------------HHhhhh----------------------------------
Confidence 788999999999999999997643210 000000
Q ss_pred hhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHH
Q 000575 1118 QCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQ 1197 (1413)
Q Consensus 1118 ~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~ 1197 (1413)
|+ ... .+ ......|+|+..|-.+|.
T Consensus 669 -------------~~---------~d~-----~L----------------------------~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 669 -------------KM---------RDE-----AL----------------------------QALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred -------------cc---------hHH-----HH----------------------------HHHHHhcCcEEeHHHHHH
Confidence 00 000 00 000012334433333333
Q ss_pred hhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHH
Q 000575 1198 SLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEAS 1277 (1413)
Q Consensus 1198 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~ 1277 (1413)
. ++..|+|||||||+++|||+|+.+
T Consensus 694 r-------------------------------------------------------Lk~~GHrVLIFSQMVRmLDIL~eY 718 (1373)
T KOG0384|consen 694 R-------------------------------------------------------LKEGGHRVLIFSQMVRMLDILAEY 718 (1373)
T ss_pred H-------------------------------------------------------HhcCCceEEEhHHHHHHHHHHHHH
Confidence 3 334799999999999999999999
Q ss_pred HHhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCC
Q 000575 1278 LKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1356 (1413)
Q Consensus 1278 L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQ 1356 (1413)
|..++++|-||||++..+.|+++|+.||.. .+-+|||+||+|||+||||+.|++|||+|..|||....||+.|+|||||
T Consensus 719 L~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQ 798 (1373)
T KOG0384|consen 719 LSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQ 798 (1373)
T ss_pred HHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcc
Confidence 999999999999999999999999999985 4688999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC---cCcccccCCHHHHHHhh
Q 000575 1357 TRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE---TGGQQTRLTVDDLNYLF 1411 (1413)
Q Consensus 1357 tr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~---~~~~~~~lt~~dL~~LF 1411 (1413)
++.|.|||||+++||||.|++++.+|.-+-.+++.... .......++.+||-.|+
T Consensus 799 kk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 799 KKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred cceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999988777764322 22445678888887764
No 7
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.7e-81 Score=775.19 Aligned_cols=556 Identities=46% Similarity=0.716 Sum_probs=479.9
Q ss_pred cCCCCCCCCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhh
Q 000575 629 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLE 708 (1413)
Q Consensus 629 l~~~~~e~~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~ 708 (1413)
+.++..+...|.+.++++ |+....||+..+.....++||||||+||||||+++|++++..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~----------- 181 (674)
T KOG1001|consen 117 IILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK----------- 181 (674)
T ss_pred hhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc-----------
Confidence 444555566676666666 66666677666666667799999999999999999999988654310
Q ss_pred hccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEE
Q 000575 709 TLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 788 (1413)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~V 788 (1413)
+ .......+.||||||.+++.||..|+ .....++.+.+
T Consensus 182 -----~------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v 219 (674)
T KOG1001|consen 182 -----E------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSI 219 (674)
T ss_pred -----c------------------------------------hhhccccCceeEecchHHHHHHHHHH-hccCCccceEE
Confidence 0 00123457899999999999999999 67777889999
Q ss_pred EEEeCCCCCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCC
Q 000575 789 LVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 868 (1413)
Q Consensus 789 lvy~G~~r~k~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk 868 (1413)
++||| |.++..++..||||||||.++..
T Consensus 220 ~v~~g--r~kd~~el~~~dVVltTy~il~~-------------------------------------------------- 247 (674)
T KOG1001|consen 220 YVYHG--RTKDKSELNSYDVVLTTYDILKN-------------------------------------------------- 247 (674)
T ss_pred EEecc--cccccchhcCCceEEeeHHHhhc--------------------------------------------------
Confidence 99999 99999999999999999999852
Q ss_pred CCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchH
Q 000575 869 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 948 (1413)
Q Consensus 869 ~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~ 948 (1413)
++|..+.|.|||+||||+|+|++++.+++++.|++.+||||||||+||+++|+|++++|+..+||..+.
T Consensus 248 -----------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~ 316 (674)
T KOG1001|consen 248 -----------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQN 316 (674)
T ss_pred -----------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhH
Confidence 347789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCc-hhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000575 949 SFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1027 (1413)
Q Consensus 949 ~F~~~~~~pi~~~~-~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~ 1027 (1413)
.|...+..|+..+. .+++.+++.+|+.+|+||+|....+|+|++.|||+.+.++.++++.+|+.+|..+....+.++..
T Consensus 317 ~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~ 396 (674)
T KOG1001|consen 317 YFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN 396 (674)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH
Confidence 99999999999998 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcch
Q 000575 1028 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 1107 (1413)
Q Consensus 1028 ~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~v 1107 (1413)
++..|++..+|..++..++||||+|+||.|+................ ...+...+..+ ..|.+|.+ ++.++
T Consensus 397 ~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~-------~~~~i~~l~~~-~~c~ic~~-~~~~~ 467 (674)
T KOG1001|consen 397 YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAAL-------IIRLIVDLSVS-HWCHICCD-LDSFF 467 (674)
T ss_pred HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchH-------HHHHHHHHhhc-cccccccc-cccce
Confidence 99999999999999999999999999999876432221111111110 11144455555 89999999 88899
Q ss_pred hcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccH
Q 000575 1108 VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSS 1187 (1413)
Q Consensus 1108 it~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ss 1187 (1413)
++.|+|.||.+|+.+.+....+. |.+.|+..+....+++...+...+.+ ... .+.
T Consensus 468 it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~-----------------------~~~-~s~ 522 (674)
T KOG1001|consen 468 ITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIIND-----------------------LLP-ESS 522 (674)
T ss_pred eecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhh-----------------------ccc-hhh
Confidence 99999999999999999887666 55579999888888765444333322 000 588
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEccc
Q 000575 1188 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQW 1267 (1413)
Q Consensus 1188 Ki~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~ 1267 (1413)
|+.++++.|+.... ... .|+||||||
T Consensus 523 ki~~~~~~l~~~~~-----------------------------------------------------s~~-~kiiifsq~ 548 (674)
T KOG1001|consen 523 KIYAFLKILQAKEM-----------------------------------------------------SEQ-PKIVIFSQL 548 (674)
T ss_pred hhHHHHHHHhhccC-----------------------------------------------------CCC-CceeeehhH
Confidence 99999998883100 003 499999999
Q ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHH
Q 000575 1268 TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1347 (1413)
Q Consensus 1268 t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QA 1347 (1413)
+.++++++..|...++.+.+++|.|+..+|.+.+..|..++.++||++|++|||.||||++|+|||++||||||+.|+||
T Consensus 549 ~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQa 628 (674)
T KOG1001|consen 549 IWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQA 628 (674)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCC
Q 000575 1348 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1392 (1413)
Q Consensus 1348 iGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~ 1392 (1413)
|+|+||+||+++|+|+||++++|+||||+++|++|+.++..++|+
T Consensus 629 idR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 629 IDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999875
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-80 Score=738.39 Aligned_cols=498 Identities=30% Similarity=0.494 Sum_probs=391.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
+.|.+||+.||+|+.-..+..+ .||||||||||||+|+||++++.+..
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~----------------------------- 445 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI----------------------------- 445 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc-----------------------------
Confidence 4699999999999998777554 47999999999999999999875421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 799 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~----- 799 (1413)
...+|.|||||+|++.+|.+|+++|+| .|+|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 124679999999999999999999998 899999999973321
Q ss_pred -cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000575 800 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 878 (1413)
Q Consensus 800 -~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~ 878 (1413)
...-..|||++|||..+... ++|
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kdD------------------------------------------------ 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KDD------------------------------------------------ 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hHH------------------------------------------------
Confidence 11123899999999998631 111
Q ss_pred cCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccch-HHHHhhhccC
Q 000575 879 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-KSFCSMIKVP 957 (1413)
Q Consensus 879 ~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~-~~F~~~~~~p 957 (1413)
.+.|.+.+|+.||.||+|++||..|.+++.+..++|+.|++|||||+||++.||++||.|+.|..|... ..+...|...
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 234778899999999999999999999999999999999999999999999999999999999999754 4454444432
Q ss_pred CC-CCc-------hhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000575 958 IS-KNP-------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYA 1029 (1413)
Q Consensus 958 i~-~~~-------~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~ 1029 (1413)
-+ ..+ ..++.+...+++||+|||.|.+|++ .|||+..++.+|.|+..|+.+|+.+............
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~ 671 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVS 671 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccc
Confidence 21 111 2356788999999999999999998 8999999999999999999999988765532221111
Q ss_pred HcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHH---HHHHHHhhhhccccccCCCCCCcc
Q 000575 1030 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ---MYLLNCLEASLAICGICNDPPEDA 1106 (1413)
Q Consensus 1030 ~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~---~~ll~~le~~~~~C~iC~d~~~~~ 1106 (1413)
.. ....+ -..+|+||++++||.|++.+..+..++......-+.++... .++...++-.. +
T Consensus 672 ~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~ms-----------D- 734 (941)
T KOG0389|consen 672 KN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMS-----------D- 734 (941)
T ss_pred cc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhh-----------H-
Confidence 11 00111 34689999999999999987776555443333222222111 11111111100 0
Q ss_pred hhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCccccc
Q 000575 1107 VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 1186 (1413)
Q Consensus 1107 vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~s 1186 (1413)
-=-|.+|.+.- | + .........|..|
T Consensus 735 ---felHqLc~~f~---------------~------------------~------------------~~f~L~d~~~mdS 760 (941)
T KOG0389|consen 735 ---FELHQLCCQFR---------------H------------------L------------------SKFQLKDDLWMDS 760 (941)
T ss_pred ---HHHHHHHHhcC---------------C------------------C------------------cccccCCchhhhh
Confidence 01144443310 0 0 0001112345568
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcc
Q 000575 1187 SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQ 1266 (1413)
Q Consensus 1187 sKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq 1266 (1413)
+|++.|-++|.++ +..|+|||||||
T Consensus 761 gK~r~L~~LLp~~-------------------------------------------------------k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 761 GKCRKLKELLPKI-------------------------------------------------------KKKGDRVLIFSQ 785 (941)
T ss_pred hhHhHHHHHHHHH-------------------------------------------------------hhcCCEEEEeeH
Confidence 9999999988874 236899999999
Q ss_pred cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHH
Q 000575 1267 WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQ 1346 (1413)
Q Consensus 1267 ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~Q 1346 (1413)
||.|||+|+..|...++.|+|+||++....|+.+|+.|+++.++.|+|+||+|||.||||++||+||++|..+||....|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000575 1347 AIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1394 (1413)
Q Consensus 1347 AiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~ 1394 (1413)
|.+|+||+||+|||+|||||+++||||.|+++.+.|.++-..+-+.++
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999877755443
No 9
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.1e-79 Score=782.86 Aligned_cols=474 Identities=29% Similarity=0.486 Sum_probs=396.1
Q ss_pred CCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000575 638 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 717 (1413)
Q Consensus 638 ~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 717 (1413)
.|. .+...|++||+.||+||+..... +.|||||||||||||+|+|+++...+..
T Consensus 162 qP~-~i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPS-CIKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CCh-HhccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 344 45578999999999999987653 3689999999999999999999763210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000575 718 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 797 (1413)
Q Consensus 718 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 797 (1413)
....+|+|||||++++.||.+||.+|++ .+++++|+|....
T Consensus 216 ------------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~e 256 (1033)
T PLN03142 216 ------------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEE 256 (1033)
T ss_pred ------------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHH
Confidence 1123679999999999999999999986 6899999998643
Q ss_pred CCc-----ccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000575 798 KDP-----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 872 (1413)
Q Consensus 798 k~~-----~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~ 872 (1413)
+.. ....++|||||||+++.++.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~---------------------------------------------------- 284 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEK---------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHH----------------------------------------------------
Confidence 211 12357999999999986421
Q ss_pred cccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHh
Q 000575 873 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 952 (1413)
Q Consensus 873 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~ 952 (1413)
..|..+.|++|||||||+|||..++++++++.|++.+||+|||||++|++.|||++|+||.|+.|.+...|..
T Consensus 285 -------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~ 357 (1033)
T PLN03142 285 -------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 357 (1033)
T ss_pred -------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHH
Confidence 1366788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000575 953 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1032 (1413)
Q Consensus 953 ~~~~pi~~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g 1032 (1413)
+|..+........+.+|+.+|++||+||+|.+|.. .|||+.+.+++|.||+.|+++|..+.......+ ..+
T Consensus 358 ~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g 428 (1033)
T PLN03142 358 WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAG 428 (1033)
T ss_pred HHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hcc
Confidence 99876655566678899999999999999999976 799999999999999999999999876543322 222
Q ss_pred cccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccC
Q 000575 1033 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1112 (1413)
Q Consensus 1033 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~Cg 1112 (1413)
. ....++..+++||++|+||.|+.......
T Consensus 429 ~---~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------------- 458 (1033)
T PLN03142 429 G---ERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------------- 458 (1033)
T ss_pred c---cHHHHHHHHHHHHHHhCCHHhhhcccccC-----------------------------------------------
Confidence 2 23457888999999999998764311000
Q ss_pred cccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHH
Q 000575 1113 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1192 (1413)
Q Consensus 1113 HifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~al 1192 (1413)
| ...+ ......++|+..+
T Consensus 459 -------------------~----------------------------------~~~~---------e~lie~SgKl~lL 476 (1033)
T PLN03142 459 -------------------P----------------------------------YTTG---------EHLVENSGKMVLL 476 (1033)
T ss_pred -------------------c----------------------------------ccch---------hHHhhhhhHHHHH
Confidence 0 0000 0011236788888
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000575 1193 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1272 (1413)
Q Consensus 1193 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~Ld 1272 (1413)
.++|..+ ...++||||||||+.+++
T Consensus 477 dkLL~~L-------------------------------------------------------k~~g~KVLIFSQft~~Ld 501 (1033)
T PLN03142 477 DKLLPKL-------------------------------------------------------KERDSRVLIFSQMTRLLD 501 (1033)
T ss_pred HHHHHHH-------------------------------------------------------HhcCCeEEeehhHHHHHH
Confidence 7777763 126799999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000575 1273 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1351 (1413)
Q Consensus 1273 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRv 1351 (1413)
+|+.+|...|+.|++|+|+++..+|+++|++|++++ ...|||+||+|||+|||||.|++||+||+||||+.+.||+|||
T Consensus 502 iLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 502 ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred HHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999754 5679999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000575 1352 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1352 hRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt~~dL~~LF~ 1412 (1413)
|||||+++|+||||++++||||+|++++.+|..+...+++.+... ....++.+||..||.
T Consensus 582 HRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~-~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 582 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA-EQKTVNKDELLQMVR 641 (1033)
T ss_pred hhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998765432 335788899988874
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6e-78 Score=725.94 Aligned_cols=581 Identities=30% Similarity=0.459 Sum_probs=421.6
Q ss_pred CCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000575 638 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 717 (1413)
Q Consensus 638 ~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 717 (1413)
+-+.++...|+.||+.||.||.......+ .||||||||||||||+|+|+++.--.
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLACe---------------------- 661 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLACE---------------------- 661 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHHhc----------------------
Confidence 44567888899999999999999887654 59999999999999999999874210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000575 718 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 797 (1413)
Q Consensus 718 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 797 (1413)
....+|.|||||.+++-+|+-|+++|++ .|+++.|+|+.+.
T Consensus 662 ------------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kE 702 (1958)
T KOG0391|consen 662 ------------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKE 702 (1958)
T ss_pred ------------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHH
Confidence 2345789999999999999999999998 7999999999765
Q ss_pred CC-----cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000575 798 KD-----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 872 (1413)
Q Consensus 798 k~-----~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~ 872 (1413)
+. ..+-..|.|.||+|..|..+.
T Consensus 703 rkeKRqgW~kPnaFHVCItSYklv~qd~---------------------------------------------------- 730 (1958)
T KOG0391|consen 703 RKEKRQGWAKPNAFHVCITSYKLVFQDL---------------------------------------------------- 730 (1958)
T ss_pred HHHHhhcccCCCeeEEeehhhHHHHhHH----------------------------------------------------
Confidence 42 223346889999999997532
Q ss_pred cccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHh
Q 000575 873 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 952 (1413)
Q Consensus 873 ~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~ 952 (1413)
..+.+.+|.++||||||+|||.++++++++..+++.+|++|||||+||++.|||+|++||+|..|.+...|..
T Consensus 731 -------~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~ 803 (1958)
T KOG0391|consen 731 -------TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKP 803 (1958)
T ss_pred -------HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHH
Confidence 1256778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCC-------chhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 000575 953 MIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF 1025 (1413)
Q Consensus 953 ~~~~pi~~~-------~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~ 1025 (1413)
||.+|+..- ....+.+|+++|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+..+ ..-
T Consensus 804 wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq--~~T 876 (1958)
T KOG0391|consen 804 WFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQ--PGT 876 (1958)
T ss_pred HhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhc--cch
Confidence 999998653 23457899999999999999999988 8999999999999999999999988543 233
Q ss_pred HHHHHcccccchHHHHHHHHHHHHHHccCcccccccC-------------ch-hhhhhHHHH------------------
Q 000575 1026 KEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD-------------SN-SLLRSSVEM------------------ 1073 (1413)
Q Consensus 1026 ~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~-------------~~-s~~~~s~e~------------------ 1073 (1413)
++.++.| +++++|..||+||++||||-|+...- .. ...+...+.
T Consensus 877 KetLkSG----hfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~ 952 (1958)
T KOG0391|consen 877 KETLKSG----HFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSA 952 (1958)
T ss_pred hhHhhcC----chhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccc
Confidence 3444444 78999999999999999998874310 00 000000000
Q ss_pred ------------Hh----hchH----------------------------------------------------------
Q 000575 1074 ------------AK----KLPQ---------------------------------------------------------- 1079 (1413)
Q Consensus 1074 ------------a~----~l~~---------------------------------------------------------- 1079 (1413)
|. .++.
T Consensus 953 vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~ 1032 (1958)
T KOG0391|consen 953 VPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQ 1032 (1958)
T ss_pred ccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcH
Confidence 00 0000
Q ss_pred --------------------------------------------------------------------------------
Q 000575 1080 -------------------------------------------------------------------------------- 1079 (1413)
Q Consensus 1080 -------------------------------------------------------------------------------- 1079 (1413)
T Consensus 1033 ~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gta 1112 (1958)
T KOG0391|consen 1033 SRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTA 1112 (1958)
T ss_pred hHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchh
Confidence
Q ss_pred -----------------HHHHHHHHHhhhh---------ccccccCCCC-----------CCcchhcccCc-ccchhhhh
Q 000575 1080 -----------------ERQMYLLNCLEAS---------LAICGICNDP-----------PEDAVVSICGH-VFCNQCIC 1121 (1413)
Q Consensus 1080 -----------------e~~~~ll~~le~~---------~~~C~iC~d~-----------~~~~vit~CgH-ifC~~Ci~ 1121 (1413)
+++-.+-.+|+.- ...-.+|.-+ +...+++.|.. -.|..-|.
T Consensus 1113 t~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iId 1192 (1958)
T KOG0391|consen 1113 TLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIID 1192 (1958)
T ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHH
Confidence 0000000000000 0001112111 11122233321 11222222
Q ss_pred hhhc-cCCCCCCCccccccccccchhh-----hhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHH
Q 000575 1122 ERLT-ADDNQCPTRNCKIRLSLSSVFS-----KATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 1195 (1413)
Q Consensus 1122 ~~l~-~~~~~Cp~~~C~~~l~~~~v~~-----~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allel 1195 (1413)
.+.. .....-+...|+..-....+-. ...+...+........ ....-....+...-..|...|+++|.-+
T Consensus 1193 rfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q----~~~~r~lqFPelrLiqyDcGKLQtLAiL 1268 (1958)
T KOG0391|consen 1193 RFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQ----TTAPRLLQFPELRLIQYDCGKLQTLAIL 1268 (1958)
T ss_pred HheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhh----ccchhhhcCcchheeecccchHHHHHHH
Confidence 2211 0011111111111110000000 0000000000000000 0000111112223334567888888877
Q ss_pred HHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHH
Q 000575 1196 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLE 1275 (1413)
Q Consensus 1196 L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe 1275 (1413)
|+++ +..|+++|||+|++.|||+|+
T Consensus 1269 LqQL-------------------------------------------------------k~eghRvLIfTQMtkmLDVLe 1293 (1958)
T KOG0391|consen 1269 LQQL-------------------------------------------------------KSEGHRVLIFTQMTKMLDVLE 1293 (1958)
T ss_pred HHHH-------------------------------------------------------HhcCceEEehhHHHHHHHHHH
Confidence 7774 337899999999999999999
Q ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccC
Q 000575 1276 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1276 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIG 1355 (1413)
.+|..+|+.|+||||.++.++|++++++||.|..|+++|+||+.||+|+|||.|++|||||..|||+...||.+|+||||
T Consensus 1294 qFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIG 1373 (1958)
T KOG0391|consen 1294 QFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1373 (1958)
T ss_pred HHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhcC
Q 000575 1356 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1413 (1413)
Q Consensus 1356 Qtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt~~dL~~LF~~ 1413 (1413)
|+|+|+|||||.+.||||.|+.....|+.+-+-++.++.. ...-++..+++.||++
T Consensus 1374 qtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf--Tt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1374 QTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF--TTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred CccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc--cHHHHhhhhHHHHhcC
Confidence 9999999999999999999999999999998888765543 3445777788888874
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-76 Score=686.84 Aligned_cols=544 Identities=31% Similarity=0.478 Sum_probs=393.1
Q ss_pred CCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 000575 640 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 719 (1413)
Q Consensus 640 ~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 719 (1413)
|.++++.|..||..|++|++.....+. .||||||||||||+|+|+++++.- ++.+
T Consensus 561 Pkil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLa--------------E~~n-------- 615 (1185)
T KOG0388|consen 561 PKILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLA--------------ETHN-------- 615 (1185)
T ss_pred chhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHH--------------Hhcc--------
Confidence 346788999999999999999877553 499999999999999999998632 2211
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 000575 720 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 799 (1413)
Q Consensus 720 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~ 799 (1413)
-.+|+|||+|+|+|.+|++||.+|+| .++++.|.|+...+.
T Consensus 616 ------------------------------------IwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRk 656 (1185)
T KOG0388|consen 616 ------------------------------------IWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERK 656 (1185)
T ss_pred ------------------------------------CCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhH
Confidence 13689999999999999999999997 799999999864432
Q ss_pred -----------cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCC
Q 000575 800 -----------PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 868 (1413)
Q Consensus 800 -----------~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk 868 (1413)
-.+.+.|+||||||+++-.+ +
T Consensus 657 iLrKfw~rKnmY~rna~fhVviTSYQlvVtD-----------e------------------------------------- 688 (1185)
T KOG0388|consen 657 ILRKFWNRKNMYRRNAPFHVVITSYQLVVTD-----------E------------------------------------- 688 (1185)
T ss_pred HHHHhcchhhhhccCCCceEEEEeeeeeech-----------H-------------------------------------
Confidence 12446789999999998532 1
Q ss_pred CCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchH
Q 000575 869 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 948 (1413)
Q Consensus 869 ~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~ 948 (1413)
.-|.+++|..+||||||.||...+.+++.+..++++.|++||||||||+..|||++|+|++|..|++..
T Consensus 689 -----------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshn 757 (1185)
T KOG0388|consen 689 -----------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHN 757 (1185)
T ss_pred -----------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchH
Confidence 127889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCC-------chhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q 000575 949 SFCSMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINS 1021 (1413)
Q Consensus 949 ~F~~~~~~pi~~~-------~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~ 1021 (1413)
+|.+||..-|+.. ..+.+++|+.+|++|||||.|++|.. +|..+++..++|+||..|+.+|+.+....
T Consensus 758 eFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~i 832 (1185)
T KOG0388|consen 758 EFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSI 832 (1185)
T ss_pred HHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHh
Confidence 9999998877543 34568999999999999999999987 89999999999999999999999885432
Q ss_pred HHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhh--------hhHHH-----HHhhchHH---HHHHH
Q 000575 1022 RDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLL--------RSSVE-----MAKKLPQE---RQMYL 1085 (1413)
Q Consensus 1022 r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~--------~~s~e-----~a~~l~~e---~~~~l 1085 (1413)
. .+....++++||++|+||.|+++....+-+ ...+. +..++|.- ....+
T Consensus 833 S---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~ 897 (1185)
T KOG0388|consen 833 S---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEM 897 (1185)
T ss_pred h---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHH
Confidence 2 112224789999999999998765432111 00000 00011110 00000
Q ss_pred --HHHhhhhccccccC---C-CCCC---cchh--cccC-cccch-----hhhhhhhccC---------------------
Q 000575 1086 --LNCLEASLAICGIC---N-DPPE---DAVV--SICG-HVFCN-----QCICERLTAD--------------------- 1127 (1413)
Q Consensus 1086 --l~~le~~~~~C~iC---~-d~~~---~~vi--t~Cg-HifC~-----~Ci~~~l~~~--------------------- 1127 (1413)
.+..+....+|..- + +++. .+.+ ...| .+|-. ..+...+...
T Consensus 898 ~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~ 977 (1185)
T KOG0388|consen 898 FRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQR 977 (1185)
T ss_pred HHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhh
Confidence 00001111122211 1 1110 0000 0011 11100 0011000000
Q ss_pred CCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccc---cCCccCCcccccHHHHHHHHHHHhhcCCCC
Q 000575 1128 DNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV---EAPSCEGVWYNSSKIKAALEVLQSLAKPRG 1204 (1413)
Q Consensus 1128 ~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~---~~~~~~~~~~~ssKi~allelL~~l~~~~~ 1204 (1413)
...|-.++.... ..|.....+.+ +++...-...+. -.+........++|+..+-++|.+
T Consensus 978 ~~y~y~P~v~ap---------PvLI~~ead~P---eId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~k------ 1039 (1185)
T KOG0388|consen 978 HVYCYSPVVAAP---------PVLISNEADLP---EIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPK------ 1039 (1185)
T ss_pred heeeeccccCCC---------CeeeecccCCC---CCCccccCcccccceecCcHHhhhccccceeeHHHHHHH------
Confidence 001111111000 00111111111 010000000000 001111222345555555555554
Q ss_pred CcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCc
Q 000575 1205 NTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ 1284 (1413)
Q Consensus 1205 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gI~ 1284 (1413)
+++.++++|+|.|.|.|+++|+.+|..+|++
T Consensus 1040 -------------------------------------------------LkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ 1070 (1185)
T KOG0388|consen 1040 -------------------------------------------------LKAEGHRVLMYFQMTKMIDLIEDYLVYRGYT 1070 (1185)
T ss_pred -------------------------------------------------hhcCCceEEehhHHHHHHHHHHHHHHhhccc
Confidence 3448999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEE
Q 000575 1285 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLR 1364 (1413)
Q Consensus 1285 ~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~r 1364 (1413)
|+|+||+....+|..+|.+|+. ++++|||+||+|||+|+|||+|++|||||..|||+...||++|+||+||||+|+|||
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000575 1365 LTVKNTVEDRILALQQKKREMVASAFGEDE 1394 (1413)
Q Consensus 1365 Li~kdTIEErIl~lq~~K~~l~~~~lg~d~ 1394 (1413)
|++++||||+|+++..+|.+....++.+..
T Consensus 1150 l~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~ 1179 (1185)
T KOG0388|consen 1150 LITRGTVEEKVLERANQKDEVQQMVMHGNI 1179 (1185)
T ss_pred ecccccHHHHHHHHhhhHHHHHHHHHcCCc
Confidence 999999999999999999998888875543
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-68 Score=647.38 Aligned_cols=461 Identities=31% Similarity=0.494 Sum_probs=382.8
Q ss_pred CCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000575 636 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 715 (1413)
Q Consensus 636 ~~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 715 (1413)
+.+|..+....|++||+.||.||+......+ -||||||||||||+++|+||.+... .
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE--------------~------ 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLME--------------H------ 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHH--------------H------
Confidence 4457767778899999999999998877654 4999999999999999999987421 0
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000575 716 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 795 (1413)
Q Consensus 716 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 795 (1413)
....+|.|||||.++|.+|..|+.+|.+ .+..++|.|..
T Consensus 441 --------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp 479 (1157)
T KOG0386|consen 441 --------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTP 479 (1157)
T ss_pred --------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCH
Confidence 1123689999999999999999999976 89999999987
Q ss_pred CCCC----cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCC
Q 000575 796 RTKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 871 (1413)
Q Consensus 796 r~k~----~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~ 871 (1413)
..+. ...-.+|+|++|||+-+..+
T Consensus 480 ~~R~~l~~qir~gKFnVLlTtyEyiikd---------------------------------------------------- 507 (1157)
T KOG0386|consen 480 QQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------------------------------------------- 507 (1157)
T ss_pred HHHhhHHHHHhcccceeeeeeHHHhcCC----------------------------------------------------
Confidence 4432 22237999999999887531
Q ss_pred CcccccccCCccccCccEEEEcCCcccCChhhHHHHHHH-hcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHH
Q 000575 872 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 950 (1413)
Q Consensus 872 ~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~-~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F 950 (1413)
+..|.+|.|..+||||+|++||..++++..+. ...+.+|++|||||+||++.|||++|+||-|..|.+...|
T Consensus 508 -------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 508 -------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred -------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 23488999999999999999999999999887 5589999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCch----------hhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 000575 951 CSMIKVPISKNPV----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 1020 (1413)
Q Consensus 951 ~~~~~~pi~~~~~----------~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~ 1020 (1413)
..||..|+..... -.+.+|+.+|+||++||.|++|.. .||.+++.+++|++|.-|+.+|..+...
T Consensus 581 eqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred HHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhC
Confidence 9999999966542 126899999999999999999987 8999999999999999999999987532
Q ss_pred HHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCC
Q 000575 1021 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 1100 (1413)
Q Consensus 1021 ~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~ 1100 (1413)
-+-. .+....+..+..+...++.||++|+||+++...... |..+.
T Consensus 656 g~l~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~~~~~ 700 (1157)
T KOG0386|consen 656 GQLL----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------YTLHY 700 (1157)
T ss_pred CCCC----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------ccccc
Confidence 2111 011122345566788899999999999887432110 00000
Q ss_pred CCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccC
Q 000575 1101 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 1180 (1413)
Q Consensus 1101 d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~ 1180 (1413)
++ .
T Consensus 701 ~~-----------------------------------------------------------------------------~ 703 (1157)
T KOG0386|consen 701 DI-----------------------------------------------------------------------------K 703 (1157)
T ss_pred Ch-----------------------------------------------------------------------------h
Confidence 00 0
Q ss_pred CcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCe
Q 000575 1181 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1260 (1413)
Q Consensus 1181 ~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~K 1260 (1413)
..+..++|++.+-.+|-+ +++.+++
T Consensus 704 dL~R~sGKfELLDRiLPK-------------------------------------------------------LkatgHR 728 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPK-------------------------------------------------------LKATGHR 728 (1157)
T ss_pred HHHHhccHHHHHHhhhHH-------------------------------------------------------HHhcCcc
Confidence 112235666655555544 2347899
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCC
Q 000575 1261 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1339 (1413)
Q Consensus 1261 vIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~i~VLL~StkaGg~GLNLq~An~VI~lDp~W 1339 (1413)
|+.|+|.|.++++++.+|.-.++.|+|+||+++.++|...++.||.. ..+++||+|++|||+|||||.|++||++|..|
T Consensus 729 VLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw 808 (1157)
T KOG0386|consen 729 VLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW 808 (1157)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC
Confidence 99999999999999999999999999999999999999999999984 46999999999999999999999999999999
Q ss_pred CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Q 000575 1340 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1391 (1413)
Q Consensus 1340 NP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg 1391 (1413)
||..+.||.+|+|||||+++|.|.||++-+++||+|++.+..|..+...++.
T Consensus 809 np~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 809 NPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred CchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 9999999999999999999999999999999999999999999887766653
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-66 Score=635.60 Aligned_cols=494 Identities=27% Similarity=0.382 Sum_probs=385.8
Q ss_pred CCCCcccCCchHHHHHHHHHHHhhccCC---CCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000575 639 PDGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 715 (1413)
Q Consensus 639 P~g~l~~~L~phQ~~av~wMl~rE~~~~---~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 715 (1413)
++..++-.|+|||++|+.||.+--.+.. ...|+|+||+||+|||+++|++|......
T Consensus 231 ~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-------------------- 290 (776)
T KOG0390|consen 231 IDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-------------------- 290 (776)
T ss_pred ecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh--------------------
Confidence 3445677799999999999998776652 45889999999999999999999764321
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000575 716 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 795 (1413)
Q Consensus 716 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 795 (1413)
.|.. ...+...|||||.+|+.+|++|+.||... ..+..+.+.|..
T Consensus 291 --------------~P~~--------------------~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~ 335 (776)
T KOG0390|consen 291 --------------FPQA--------------------KPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTK 335 (776)
T ss_pred --------------CcCc--------------------cccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeeccc
Confidence 1000 01235689999999999999999999863 478888888877
Q ss_pred CCC---------CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccC
Q 000575 796 RTK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQ 866 (1413)
Q Consensus 796 r~k---------~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~ 866 (1413)
+.. -....-.+-|.|.+|++++..+
T Consensus 336 ~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~---------------------------------------------- 369 (776)
T KOG0390|consen 336 KSSWIKLKSILFLGYKQFTTPVLIISYETASDYC---------------------------------------------- 369 (776)
T ss_pred chhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH----------------------------------------------
Confidence 641 0111224458899999886322
Q ss_pred CCCCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccc
Q 000575 867 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 946 (1413)
Q Consensus 867 kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~ 946 (1413)
..+....+++||+||+|+.||..+.+++++..|++.+|++|||||+||++.|+++++.|.+|+.+..
T Consensus 370 -------------~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs 436 (776)
T KOG0390|consen 370 -------------RKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGS 436 (776)
T ss_pred -------------HHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccc
Confidence 1145566789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccCCCCCch-----------hhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000575 947 YKSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1015 (1413)
Q Consensus 947 ~~~F~~~~~~pi~~~~~-----------~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~ 1015 (1413)
...|...+..|+.+... ..++.|+.++..|++||+-+.+.+ .||++.+.++.|.+++.|+.+|.
T Consensus 437 ~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 437 ISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred hHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHH
Confidence 99999999988866322 226779999999999999966665 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccc
Q 000575 1016 QLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAI 1095 (1413)
Q Consensus 1016 ~L~~~~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~ 1095 (1413)
.+.... .. ..+ .| + .|..++.|+++|+||.|+...+
T Consensus 512 ~l~~~~-~~-~~~--~~-----~--~l~~~~~L~k~cnhP~L~~~~~--------------------------------- 547 (776)
T KOG0390|consen 512 KLLDSM-KM-RTL--KG-----Y--ALELITKLKKLCNHPSLLLLCE--------------------------------- 547 (776)
T ss_pred HHHHHH-Hh-hhh--hc-----c--hhhHHHHHHHHhcCHHhhcccc---------------------------------
Confidence 986542 11 110 11 1 5778889999999998874110
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCccccc
Q 000575 1096 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE 1175 (1413)
Q Consensus 1096 C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~ 1175 (1413)
.|.. ++.. +....+ . . ....
T Consensus 548 --~~~~----------------------------------e~~~------~~~~~~----~--~-----------~~~~- 567 (776)
T KOG0390|consen 548 --KTEK----------------------------------EKAF------KNPALL----L--D-----------PGKL- 567 (776)
T ss_pred --cccc----------------------------------cccc------cChHhh----h--c-----------cccc-
Confidence 0000 0000 000000 0 0 0000
Q ss_pred CCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccc
Q 000575 1176 APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIK 1255 (1413)
Q Consensus 1176 ~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1255 (1413)
.........+.|+..++.+|....+
T Consensus 568 -~~~~~~~~ks~kl~~L~~ll~~~~e------------------------------------------------------ 592 (776)
T KOG0390|consen 568 -KLDAGDGSKSGKLLVLVFLLEVIRE------------------------------------------------------ 592 (776)
T ss_pred -ccccccchhhhHHHHHHHHHHHHhh------------------------------------------------------
Confidence 0000111236777777777644210
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEEEE
Q 000575 1256 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1256 ~~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i-~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
....|+++-++++.++++++..++-+|+.++++||+|+..+|+.+|+.||+.+.. +|||+|++|||+||||+.|+|||+
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 1457899999999999999999999999999999999999999999999997665 999999999999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000575 1335 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1335 lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt~~dL~~LF~ 1412 (1413)
||+.|||+.+.|||+||||.||+|+|+||||++.||+||+|+++|..|..+-..+|+..+.. ......++++.||.
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~--~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDV--EKHFFTEDLKTLFD 748 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEeccccc--ccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876642 22344478888885
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=5.1e-62 Score=580.89 Aligned_cols=580 Identities=24% Similarity=0.319 Sum_probs=382.7
Q ss_pred ccCCchHHHHHHHHHHHhhc------cCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000575 644 AVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 717 (1413)
Q Consensus 644 ~~~L~phQ~~av~wMl~rE~------~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 717 (1413)
...|.|||..||.||+.--- ....+.||||||-||||||+|.|+++......
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c---------------------- 723 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC---------------------- 723 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh----------------------
Confidence 45699999999999997322 23356899999999999999999998653211
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC---CCCcEEEEEeCC
Q 000575 718 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS---KGSLSVLVYHGS 794 (1413)
Q Consensus 718 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~---~~~L~Vlvy~G~ 794 (1413)
. ....++.|||||.+++.+|..|+.+|.+. ...|.|.-....
T Consensus 724 -----------------~------------------klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------D------------------KLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------h------------------ccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 0 01235689999999999999999999873 124555555444
Q ss_pred CCCCCcc----cc-cCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000575 795 SRTKDPC----EL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 869 (1413)
Q Consensus 795 ~r~k~~~----~L-~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~ 869 (1413)
+|..+.. .| ....|.|+.|++++..... +..| .| +
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g----------------------------r~vk-----~r---k---- 808 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG----------------------------RNVK-----SR---K---- 808 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc----------------------------cchh-----hh---H----
Confidence 4433221 11 2457999999999753210 0000 00 0
Q ss_pred CCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHH
Q 000575 870 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 949 (1413)
Q Consensus 870 ~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~ 949 (1413)
..+.....|..-+.++||+||||.|||..+.+++|+..+++++|++|||||+||++.|+|.+++|++++.++...+
T Consensus 809 ----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~E 884 (1567)
T KOG1015|consen 809 ----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKE 884 (1567)
T ss_pred ----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHH
Confidence 0111223466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCchh------------hHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHH
Q 000575 950 FCSMIKVPISKNPVK------------GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1017 (1413)
Q Consensus 950 F~~~~~~pi~~~~~~------------~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L 1017 (1413)
|+++|.+||+++... +..-|..+|+.++-|+-...+.. .|||+++.++.+.||+.|+.+|+.+
T Consensus 885 frNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~y 959 (1567)
T KOG1015|consen 885 FRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYY 959 (1567)
T ss_pred HHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHH
Confidence 999999999887421 23457889999998887776655 7999999999999999999999987
Q ss_pred HHHHHHHHHHHHHccccc---chHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhcc
Q 000575 1018 EINSRDQFKEYAAAGTVK---QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA 1094 (1413)
Q Consensus 1018 ~~~~r~~~~~~~~~g~~~---~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~ 1094 (1413)
... ... ..+... ..-.++|+.+.-|+++.+||..+.-.... .+ .+.+..+ ...
T Consensus 960 L~h-~~~-----~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~------~e-nkR~~se-----------ddm 1015 (1567)
T KOG1015|consen 960 LDH-LTG-----VGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSIS------KE-NKRYFSE-----------DDM 1015 (1567)
T ss_pred Hhh-ccc-----cCCccccccchhhhHHHHHHHHHHHhcCCCceeechhh------hh-hcccccc-----------cch
Confidence 541 110 011111 14467888888999999999765321100 00 0000000 000
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhh---cccccccCCCCCC----CCCC
Q 000575 1095 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKAT---LNNSLSQRQPGQE----IPTD 1167 (1413)
Q Consensus 1095 ~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~---l~~~~~~~~~~~~----ip~~ 1167 (1413)
.-.||.+..++..... ...+|..--.-.+..++..-.............+..... ......+.....+ +-.+
T Consensus 1016 ~~fi~D~sde~e~s~~-s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~d 1094 (1567)
T KOG1015|consen 1016 DEFIADDSDETEMSLS-SDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLED 1094 (1567)
T ss_pred hccccCCCcccccccc-ccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhc
Confidence 1122222211110000 000010000000000000000000000000000000000 0000000000000 0000
Q ss_pred CCCcccccC-C-----------ccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000575 1168 YSDSKLVEA-P-----------SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1235 (1413)
Q Consensus 1168 ~s~~~~~~~-~-----------~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1235 (1413)
..+....+. + .......-|+|+-.|+++|+.
T Consensus 1095 lag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~m------------------------------------- 1137 (1567)
T KOG1015|consen 1095 LAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRM------------------------------------- 1137 (1567)
T ss_pred ccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHH-------------------------------------
Confidence 000000000 0 000011123333333333332
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHh----------------------cCCcEEecCCCCC
Q 000575 1236 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD----------------------SSIQYRRLDGTMS 1293 (1413)
Q Consensus 1236 ~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~----------------------~gI~~~rldGsms 1293 (1413)
...-|.|+|||||....||+|+.+|.. .|..|.||||++.
T Consensus 1138 ------------------ceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1138 ------------------CEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred ------------------HHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 123589999999999999999999963 2678999999999
Q ss_pred HHHHHHHHHHHhcCCC--ccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000575 1294 VFARDKAVKDFNTLPE--VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1371 (1413)
Q Consensus 1294 ~~qR~~aI~~Fn~d~~--i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTI 1371 (1413)
..+|++..++||+..+ .+.+|+||+||++|+||.+||||||+|-.|||....|+|-||||+||++||+||||++.+|+
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccH
Confidence 9999999999998544 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000575 1372 EDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1372 EErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt~~dL~~LF~ 1412 (1413)
|++||.+|-.|+.++..++++... ....+..||..||.
T Consensus 1280 EeKIYkRQVTKqsls~RVVDeqQv---~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1280 EEKIYKRQVTKQSLSFRVVDEQQV---ERHYTMNELTELYT 1317 (1567)
T ss_pred HHHHHHHHHhHhhhhhhhhhHHHH---HHHhhHhhhHHHhh
Confidence 999999999999999999976543 34578888888874
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-61 Score=630.00 Aligned_cols=495 Identities=38% Similarity=0.578 Sum_probs=397.0
Q ss_pred CCcccCCchHHHHHHHHHHH-hhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 000575 641 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 719 (1413)
Q Consensus 641 g~l~~~L~phQ~~av~wMl~-rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 719 (1413)
..+...|++||..|+.||.. ... ...||||||+||||||+++|+++......
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------ 385 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------ 385 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc------------------------
Confidence 34556799999999999994 333 23789999999999999999999752211
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC-
Q 000575 720 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 797 (1413)
Q Consensus 720 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~-Vlvy~G~~r~- 797 (1413)
...+.++.|||||.+++.+|.+|+.+|.+ .++ +.+|+|....
T Consensus 386 ---------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 386 ---------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred ---------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 00113579999999999999999998876 577 9999998862
Q ss_pred ----CCcccccC------CCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCC
Q 000575 798 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 867 (1413)
Q Consensus 798 ----k~~~~L~~------yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~k 867 (1413)
.....+.+ +|+++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 22223333 899999999997421
Q ss_pred CCCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhh-hcccCCcc-
Q 000575 868 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 945 (1413)
Q Consensus 868 k~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~-FL~p~~f~- 945 (1413)
.....+..+.|+++|+||||+|||..+..++++..+++.+||+|||||++|++.|||++++ |+.|..+.
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0012377889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred chHHHHhhhccCCCCCch--------hhHHHHHHHHhhhheeecccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000575 946 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1015 (1413)
Q Consensus 946 ~~~~F~~~~~~pi~~~~~--------~~~~rL~~lL~~~mLRRtK~d--v~dg~pii~LPpk~~~vv~v~lS~eEre~Y~ 1015 (1413)
....|..+|..|+..... ....+|+.++.+|++||+|.+ ++. .||++.+.++.++++.+|+.+|.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~ 608 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYE 608 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHH
Confidence 569999999998876553 344558899999999999999 654 89999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHcccc--cc--hHHHHHHHHHHHHHHccCcccccccC-chhhhhhHHHHHhhchHHHHHHHHH
Q 000575 1016 QLEI---NSRDQFKEYAAAGTV--KQ--NYVNILLMLLRLRQACDHPLLVKGFD-SNSLLRSSVEMAKKLPQERQMYLLN 1087 (1413)
Q Consensus 1016 ~L~~---~~r~~~~~~~~~g~~--~~--~~~~IL~~LlrLRq~c~HP~Lv~~~~-~~s~~~~s~e~a~~l~~e~~~~ll~ 1087 (1413)
.+.. .....+......+.. .. ...+++..+++||++|+||.++.... ...
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~---------------------- 666 (866)
T COG0553 609 ALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF---------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc----------------------
Confidence 9887 444444443332211 11 36789999999999999998875321 000
Q ss_pred HhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCC
Q 000575 1088 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 1167 (1413)
Q Consensus 1088 ~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~ 1167 (1413)
+..+.....+....
T Consensus 667 --------~~~~~~~~~~~~~~---------------------------------------------------------- 680 (866)
T COG0553 667 --------DRIVLLLREDKDFD---------------------------------------------------------- 680 (866)
T ss_pred --------chhhhhhhcccccc----------------------------------------------------------
Confidence 00000000000000
Q ss_pred CCCcccccCCccCCccccc-HHHHHHHHHH-HhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHH
Q 000575 1168 YSDSKLVEAPSCEGVWYNS-SKIKAALEVL-QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 1245 (1413)
Q Consensus 1168 ~s~~~~~~~~~~~~~~~~s-sKi~allelL-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 1245 (1413)
.........+ .|+..+.++| ..+
T Consensus 681 ---------~~~~~~~~~s~~k~~~l~~ll~~~~---------------------------------------------- 705 (866)
T COG0553 681 ---------YLKKPLIQLSKGKLQALDELLLDKL---------------------------------------------- 705 (866)
T ss_pred ---------cccchhhhccchHHHHHHHHHHHHH----------------------------------------------
Confidence 0000111234 6777777777 332
Q ss_pred HhhhcccccccCCC--eEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000575 1246 AAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1323 (1413)
Q Consensus 1246 ~~~~~~~~~~~~~~--KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~G 1323 (1413)
...+. |+|||+||+.++++|+..|+..++.|++++|+++..+|+.++++|+++++..|+++|++|||.|
T Consensus 706 ---------~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~g 776 (866)
T COG0553 706 ---------LEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLG 776 (866)
T ss_pred ---------HhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccc
Confidence 11455 9999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCC
Q 000575 1324 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT 1403 (1413)
Q Consensus 1324 LNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt 1403 (1413)
|||+.|++||++||||||+.+.||++|+|||||+++|.||||++++|+||+|+++|..|+.+...+++. ........++
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~ 855 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLS 855 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 2235678899
Q ss_pred HHHHHHhhc
Q 000575 1404 VDDLNYLFM 1412 (1413)
Q Consensus 1404 ~~dL~~LF~ 1412 (1413)
.+++..||.
T Consensus 856 ~~~~~~l~~ 864 (866)
T COG0553 856 IEDLLDLFS 864 (866)
T ss_pred HHHHHHHhc
Confidence 999999986
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6e-54 Score=503.47 Aligned_cols=578 Identities=25% Similarity=0.348 Sum_probs=383.2
Q ss_pred ccCCchHHHHHHHHHHHhhccC------CCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000575 644 AVPLLRHQRIALSWMVQKETSS------LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 717 (1413)
Q Consensus 644 ~~~L~phQ~~av~wMl~rE~~~------~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 717 (1413)
.--|.|||+-|+.||...--.+ .-++|+|||+.||||||+|.|+++-...+
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR----------------------- 308 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR----------------------- 308 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-----------------------
Confidence 3348999999999987633221 24689999999999999999998733211
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC--------CCCcEEE
Q 000575 718 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSVL 789 (1413)
Q Consensus 718 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~--------~~~L~Vl 789 (1413)
..+++++|+|+|-.+|.+|-.|+..|++. +..+.|+
T Consensus 309 ------------------------------------hT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf 352 (1387)
T KOG1016|consen 309 ------------------------------------HTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVF 352 (1387)
T ss_pred ------------------------------------cCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEE
Confidence 12457799999999999999999999984 2345666
Q ss_pred EEeCCCCCCC-----cccc-cCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCcccc
Q 000575 790 VYHGSSRTKD-----PCEL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKG 863 (1413)
Q Consensus 790 vy~G~~r~k~-----~~~L-~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~ 863 (1413)
+......+-+ ...| ....|+++.|++++-...+. .+ .++| +.+..++.
T Consensus 353 ~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~------------~~------------~~gr--pkkt~kr~ 406 (1387)
T KOG1016|consen 353 LLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKT------------LP------------KKGR--PKKTLKRI 406 (1387)
T ss_pred EecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhc------------cc------------ccCC--cccccccc
Confidence 6554433221 1222 35569999999997432110 00 0000 00000000
Q ss_pred cc---CCCCCC--CcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhh
Q 000575 864 SK---QKKGPD--GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 938 (1413)
Q Consensus 864 ~~---~kk~~~--~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~F 938 (1413)
.. .-...| ..++..+...|.+-+.++||+||+|+|||.....+.++..+++++|+.|||-|+||++-|.|.++.|
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 00 000000 0123345566888899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchHHHHhhhccCCCCCc-----h-------hhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecC
Q 000575 939 LRYDPFAVYKSFCSMIKVPISKNP-----V-------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDF 1006 (1413)
Q Consensus 939 L~p~~f~~~~~F~~~~~~pi~~~~-----~-------~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~l 1006 (1413)
++|..+++..+|+.+|.+||..+. . .+...|+.+|..|+-||+..-+. +.||.+.+.++.|.+
T Consensus 487 VRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 487 VRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVRK 561 (1387)
T ss_pred ccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEeH
Confidence 999999999999999999998763 1 12356899999999999976554 479999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhh--chHHHHHH
Q 000575 1007 TDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKK--LPQERQMY 1084 (1413)
Q Consensus 1007 S~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~--l~~e~~~~ 1084 (1413)
|..||++|..+.-..... .+..+ -...|-|.+.---.++.+||..+-.+ .++ ...+....
T Consensus 562 s~iQR~LY~~Fm~d~~r~---~~~~~---~~~~NPLkAF~vCcKIWNHPDVLY~~------------l~k~~~a~e~dl~ 623 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKRE---IAANN---DAVFNPLKAFSVCCKIWNHPDVLYRL------------LEKKKRAEEDDLR 623 (1387)
T ss_pred HHHHHHHHHHHHHHHHHh---hcccc---ccccChHHHHHHHHHhcCChHHHHHH------------HHHhhhhhhhhhh
Confidence 999999999875333222 11111 11124555555666777999654221 111 11110000
Q ss_pred HHHH-hhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCC
Q 000575 1085 LLNC-LEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE 1163 (1413)
Q Consensus 1085 ll~~-le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ 1163 (1413)
+... .......|+--+.++.++-. .+. .-.++.+...... .....
T Consensus 624 vee~~~ag~~~~~~P~~~~~~~~s~------------------------------~la--Ss~~k~~n~t~kp--~~s~~ 669 (1387)
T KOG1016|consen 624 VEEMKFAGLQQQQSPFNSIPSNPST------------------------------PLA--SSTSKSANKTKKP--RGSKK 669 (1387)
T ss_pred HHHHhhhcccccCCCCCCCCCCCCC------------------------------ccc--chhhhhhcccCCc--ccCcC
Confidence 0000 00111222222221111100 000 0000110000000 00000
Q ss_pred CCCC-CCCcccccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhh
Q 000575 1164 IPTD-YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDEN 1242 (1413)
Q Consensus 1164 ip~~-~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 1242 (1413)
.|.. ..+.+++.. + ....+++..... ..+. ...+.-.+-++.+
T Consensus 670 ~p~f~ee~~e~~~y---------~---~w~~el~~nYq~--------gvLe--------------n~pk~V~~~~~~d-- 713 (1387)
T KOG1016|consen 670 APKFDEEDEEVEKY---------S---DWTFELFENYQE--------GVLE--------------NGPKIVISLEILD-- 713 (1387)
T ss_pred CCCcccccccccch---------h---hHHHHHHhhhhc--------cccc--------------CCCceEEEEeeec--
Confidence 0111 011111110 0 223333333210 0000 0000000000111
Q ss_pred HHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhc------------------CCcEEecCCCCCHHHHHHHHHHH
Q 000575 1243 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS------------------SIQYRRLDGTMSVFARDKAVKDF 1304 (1413)
Q Consensus 1243 ~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~------------------gI~~~rldGsms~~qR~~aI~~F 1304 (1413)
....-++|+|||||....|++|+..|... .+.|++++|.++..+|+++|++|
T Consensus 714 ----------es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqf 783 (1387)
T KOG1016|consen 714 ----------ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQF 783 (1387)
T ss_pred ----------cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhc
Confidence 11236899999999999999999999865 24589999999999999999999
Q ss_pred hcCCCcc-EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000575 1305 NTLPEVS-VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1383 (1413)
Q Consensus 1305 n~d~~i~-VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~ 1383 (1413)
|..+... .+++|+++|..|+||..|+++|++|..|||....||++||+|+||+|+++||||++.+++|.+|+++|-+|+
T Consensus 784 N~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKq 863 (1387)
T KOG1016|consen 784 NSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQ 863 (1387)
T ss_pred cCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhc
Confidence 9988877 788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000575 1384 EMVASAFGEDETGGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1384 ~l~~~~lg~d~~~~~~~~lt~~dL~~LF~ 1412 (1413)
-|-+.++++.. -...++..||..|.+
T Consensus 864 GmsdRvVDd~n---p~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 864 GMSDRVVDDAN---PDANISQKELENLLM 889 (1387)
T ss_pred cchhhhhcccC---ccccccHHHHHHHhh
Confidence 99999997643 346788889988865
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-53 Score=482.13 Aligned_cols=418 Identities=29% Similarity=0.374 Sum_probs=321.5
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000575 643 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 722 (1413)
Q Consensus 643 l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 722 (1413)
+--.|+|+|++||.|.++|. +..|||||||||||+||||++.+.+.+
T Consensus 195 Lvs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyraE--------------------------- 241 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRAE--------------------------- 241 (689)
T ss_pred HHHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhhc---------------------------
Confidence 34569999999999999752 236999999999999999998775432
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeC-CCCCCCcc
Q 000575 723 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-SSRTKDPC 801 (1413)
Q Consensus 723 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G-~~r~k~~~ 801 (1413)
+|.|||||+++...|++++.+|++.-.. +.+..+ ..+..+.-
T Consensus 242 -----------------------------------wplliVcPAsvrftWa~al~r~lps~~p--i~vv~~~~D~~~~~~ 284 (689)
T KOG1000|consen 242 -----------------------------------WPLLIVCPASVRFTWAKALNRFLPSIHP--IFVVDKSSDPLPDVC 284 (689)
T ss_pred -----------------------------------CcEEEEecHHHhHHHHHHHHHhcccccc--eEEEecccCCccccc
Confidence 4689999999999999999999984332 444433 33332221
Q ss_pred cccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000575 802 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 881 (1413)
Q Consensus 802 ~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~p 881 (1413)
..--|+|++|+.+...- ..
T Consensus 285 --t~~~v~ivSye~ls~l~-----------------------------------------------------------~~ 303 (689)
T KOG1000|consen 285 --TSNTVAIVSYEQLSLLH-----------------------------------------------------------DI 303 (689)
T ss_pred --cCCeEEEEEHHHHHHHH-----------------------------------------------------------HH
Confidence 12349999999986420 11
Q ss_pred ccccCccEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccCCC
Q 000575 882 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 959 (1413)
Q Consensus 882 L~~i~W~rVIlDEAH~IKN~~T~~skal~~L--~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~ 959 (1413)
|..-.|..||+||+|++|+.++++.+++.-+ .+++.++|||||.-.++.|||.+++.+.+..|.++.+|..+|+.--.
T Consensus 304 l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~ 383 (689)
T KOG1000|consen 304 LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ 383 (689)
T ss_pred HhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc
Confidence 4445699999999999999999999998877 79999999999999999999999999999999999999998875332
Q ss_pred CC------chhhHHHHHHHH-hhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000575 960 KN------PVKGYKKLQAVL-KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1032 (1413)
Q Consensus 960 ~~------~~~~~~rL~~lL-~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g 1032 (1413)
-. .-.+..+|..+| +.+|+||+|.+|+. .|||+..+++.+ .....-+.-+.+.... ++ +
T Consensus 384 vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a-------~~-~ 449 (689)
T KOG1000|consen 384 VRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAA-------AD-Y 449 (689)
T ss_pred cceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHh-------hh-c
Confidence 11 123456777776 56899999999997 899996666554 3332222222221111 11 1
Q ss_pred cccchH-HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhccc
Q 000575 1033 TVKQNY-VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSIC 1111 (1413)
Q Consensus 1033 ~~~~~~-~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~C 1111 (1413)
+..... .+-+.+++..++
T Consensus 450 t~~~~~e~~~~~l~l~y~~------------------------------------------------------------- 468 (689)
T KOG1000|consen 450 TKVNSMERKHESLLLFYSL------------------------------------------------------------- 468 (689)
T ss_pred chhhhhhhhhHHHHHHHHH-------------------------------------------------------------
Confidence 100000 000000000000
Q ss_pred CcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHH
Q 000575 1112 GHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKA 1191 (1413)
Q Consensus 1112 gHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~a 1191 (1413)
..-.|+.+
T Consensus 469 ------------------------------------------------------------------------tgiaK~~a 476 (689)
T KOG1000|consen 469 ------------------------------------------------------------------------TGIAKAAA 476 (689)
T ss_pred ------------------------------------------------------------------------hcccccHH
Confidence 01245556
Q ss_pred HHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHH
Q 000575 1192 ALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKML 1271 (1413)
Q Consensus 1192 llelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~L 1271 (1413)
..+.|....- + ...++.|++||+.+..+|
T Consensus 477 v~eyi~~~~~---------------------------------l------------------~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 477 VCEYILENYF---------------------------------L------------------PDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred HHHHHHhCcc---------------------------------c------------------ccCCCceEEEEehhHHHH
Confidence 6666554100 0 012789999999999999
Q ss_pred HHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000575 1272 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1351 (1413)
Q Consensus 1272 dlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRv 1351 (1413)
|-|+..+.++++.++||||+++..+|+.+++.|+.+.+++|-|+|..|+|.||.|++|+.|+|.+++|||....||.+|+
T Consensus 506 d~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRa 585 (689)
T KOG1000|consen 506 DTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRA 585 (689)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000575 1352 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1389 (1413)
Q Consensus 1352 hRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~ 1389 (1413)
||+|||.-|.|++|++++|+||.++.+.++|...+.++
T Consensus 586 HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 586 HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988765
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.7e-52 Score=533.57 Aligned_cols=420 Identities=20% Similarity=0.285 Sum_probs=315.2
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000575 644 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 644 ~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 723 (1413)
.+.|+|||+..+.+++++.. .+.|||||||||||++|++++.....
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~----------------------------- 195 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLL----------------------------- 195 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHH-----------------------------
Confidence 56799999999998876632 45799999999999999777643210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC----CC
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----KD 799 (1413)
Q Consensus 724 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~----k~ 799 (1413)
....+++|||||++|+.||..|+.++|. +.+.+|.+..-. ..
T Consensus 196 ------------------------------~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~ 241 (956)
T PRK04914 196 ------------------------------TGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDA 241 (956)
T ss_pred ------------------------------cCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhcccc
Confidence 1234679999999999999999998875 556666654311 11
Q ss_pred cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccccccc
Q 000575 800 PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 879 (1413)
Q Consensus 800 ~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~ 879 (1413)
...+..+++||+||+.+...- +. .
T Consensus 242 ~~pf~~~~~vI~S~~~l~~~~---------~~-----------------------------------------------~ 265 (956)
T PRK04914 242 DNPFETEQLVICSLDFLRRNK---------QR-----------------------------------------------L 265 (956)
T ss_pred cCccccCcEEEEEHHHhhhCH---------HH-----------------------------------------------H
Confidence 244557899999999986410 00 0
Q ss_pred CCccccCccEEEEcCCcccCCh---hhHHHHHHHhc--ccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhh
Q 000575 880 GPLAKVGWFRVVLDEAQSIKNH---RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 954 (1413)
Q Consensus 880 ~pL~~i~W~rVIlDEAH~IKN~---~T~~skal~~L--~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~ 954 (1413)
..+....|++|||||||++|+. .++.++++..| +++++++|||||++|++.|+|++|+||+|+.|.++..|....
T Consensus 266 ~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~ 345 (956)
T PRK04914 266 EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQ 345 (956)
T ss_pred HHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHH
Confidence 1145568999999999999953 46678888888 678999999999999999999999999999999999997643
Q ss_pred cc--CC--------CCC--chhhHHHH-------------------------------HHHH-----hhhheeecccccc
Q 000575 955 KV--PI--------SKN--PVKGYKKL-------------------------------QAVL-----KTIMLRRTKGTLL 986 (1413)
Q Consensus 955 ~~--pi--------~~~--~~~~~~rL-------------------------------~~lL-----~~~mLRRtK~dv~ 986 (1413)
.. |+ ... .......| +.++ ..+|+|+++.++.
T Consensus 346 ~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~ 425 (956)
T PRK04914 346 QQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK 425 (956)
T ss_pred HhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc
Confidence 31 11 000 01111111 1121 2688999999875
Q ss_pred CCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhh
Q 000575 987 DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSL 1066 (1413)
Q Consensus 987 dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~ 1066 (1413)
.+|++..+.+.+++.++.+..+... .. ..+++ +.+|..+.
T Consensus 426 ------~fp~R~~~~~~l~~~~~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~------- 465 (956)
T PRK04914 426 ------GFPKRELHPIPLPLPEQYQTAIKVS---LE-----------------------ARARD-MLYPEQIY------- 465 (956)
T ss_pred ------CCCcCceeEeecCCCHHHHHHHHHh---HH-----------------------HHHHh-hcCHHHHH-------
Confidence 4899999999999977544433210 00 01111 11221000
Q ss_pred hhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchh
Q 000575 1067 LRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1146 (1413)
Q Consensus 1067 ~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~ 1146 (1413)
. .++.
T Consensus 466 -~-------------------~~~~------------------------------------------------------- 470 (956)
T PRK04914 466 -Q-------------------EFED------------------------------------------------------- 470 (956)
T ss_pred -H-------------------HHhh-------------------------------------------------------
Confidence 0 0000
Q ss_pred hhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCC
Q 000575 1147 SKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDS 1226 (1413)
Q Consensus 1147 ~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1226 (1413)
....+..++|++.++++|+.+
T Consensus 471 --------------------------------~~~~~~~d~Ki~~L~~~L~~~--------------------------- 491 (956)
T PRK04914 471 --------------------------------NATWWNFDPRVEWLIDFLKSH--------------------------- 491 (956)
T ss_pred --------------------------------hhhccccCHHHHHHHHHHHhc---------------------------
Confidence 000111358999999888762
Q ss_pred CCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHHh
Q 000575 1227 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFN 1305 (1413)
Q Consensus 1227 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn 1305 (1413)
.++|+|||+++..+++.|++.| ...|++++.|+|+|+..+|+++++.|+
T Consensus 492 ------------------------------~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 492 ------------------------------RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred ------------------------------CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 3689999999999999999999 567999999999999999999999999
Q ss_pred cC-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000575 1306 TL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1384 (1413)
Q Consensus 1306 ~d-~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~ 1384 (1413)
++ ++++||| ++.+||+||||+.|++||+||+||||..++|||||+||+||+++|.||+++.++|+|++|+++..+|..
T Consensus 542 ~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 542 DEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred cCCCCccEEE-echhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 85 3788887 559999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhCC
Q 000575 1385 MVASAFGE 1392 (1413)
Q Consensus 1385 l~~~~lg~ 1392 (1413)
+++..++.
T Consensus 621 ife~~~~~ 628 (956)
T PRK04914 621 AFEHTCPT 628 (956)
T ss_pred ceeccCCC
Confidence 76655543
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-50 Score=501.87 Aligned_cols=258 Identities=33% Similarity=0.571 Sum_probs=201.7
Q ss_pred CCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CcccccCCCEEEEechhhhcccCCCCCCCchhHHH
Q 000575 756 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEE 833 (1413)
Q Consensus 756 p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k--~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~ 833 (1413)
-.|+||||||.+++.||-+||++|+.. .|+|+.|.|-...- .+.++.+||||+|||++++.|+.... +
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte-----~--- 488 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTE-----D--- 488 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhccc-----c---
Confidence 358999999999999999999999873 47999999986543 56889999999999999998874320 0
Q ss_pred HhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcc
Q 000575 834 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 913 (1413)
Q Consensus 834 k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ 913 (1413)
.+..|..+.+++.+ ...+||..+.||||||||||++....|..++++..|.
T Consensus 489 -----------------------~~~~R~lR~qsr~~------~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 489 -----------------------FGSDRQLRHQSRYM------RPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLH 539 (1394)
T ss_pred -----------------------cCChhhhhcccCCC------CCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhh
Confidence 00111111222221 2368999999999999999999999999999999999
Q ss_pred cCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccCCCCCchhhHHHHHHHHhhhheeeccccccCCCCccC
Q 000575 914 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 993 (1413)
Q Consensus 914 ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~ 993 (1413)
+.+|||+||||||+ ++||+++|.||+..||.....|...+..++... .....+..+++..+.|+.|-+|.+. +.
T Consensus 540 ~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~e---l~ 613 (1394)
T KOG0298|consen 540 AINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHE---LG 613 (1394)
T ss_pred hhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHH---hC
Confidence 99999999999999 999999999999999999999999887766554 4445788999999999999988663 67
Q ss_pred CCCcEEEEEEecCCHHHHHHHHH----HHHHHHHHHHHHHHc---------ccccchHHHHHHHHHHHHHHccCcccc
Q 000575 994 LPPKVIMLKQVDFTDEERDFYSQ----LEINSRDQFKEYAAA---------GTVKQNYVNILLMLLRLRQACDHPLLV 1058 (1413)
Q Consensus 994 LPpk~~~vv~v~lS~eEre~Y~~----L~~~~r~~~~~~~~~---------g~~~~~~~~IL~~LlrLRq~c~HP~Lv 1058 (1413)
+||..+.+....+++.+-.+|.. ....++..+...... +........++..++||||+|+||...
T Consensus 614 ~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 614 LPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred CCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhcccccc
Confidence 99998888888888877666654 333444333333211 112234567889999999999999653
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.1e-43 Score=403.54 Aligned_cols=291 Identities=40% Similarity=0.653 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHhh------ccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000575 650 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 650 hQ~~av~wMl~rE------~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 723 (1413)
||++||.||+.++ ......+|||||||||||||+++|+++......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~---------------------------- 52 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNE---------------------------- 52 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHC----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhc----------------------------
Confidence 8999999999998 111244899999999999999999999742210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC--CCCCcc
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 801 (1413)
Q Consensus 724 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~--r~k~~~ 801 (1413)
......+++|||||++++.||..|+.+|+. +..+++++|+|.. +.....
T Consensus 53 ----------------------------~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 53 ----------------------------FPQRGEKKTLIVVPSSLLSQWKEEIEKWFD-PDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ----------------------------CTTSS-S-EEEEE-TTTHHHHHHHHHHHSG-T-TS-EEEESSSCHHHHTTSS
T ss_pred ----------------------------cccccccceeEeeccchhhhhhhhhccccc-ccccccccccccccccccccc
Confidence 000112359999999999999999999985 3367999999987 334455
Q ss_pred cccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000575 802 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 881 (1413)
Q Consensus 802 ~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~p 881 (1413)
.+..++++|+||+++..... ......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~------------------------------------------------------~~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARK------------------------------------------------------KKDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TS------------------------------------------------------THTTHH
T ss_pred ccccceeeeccccccccccc------------------------------------------------------cccccc
Confidence 67899999999999971000 000123
Q ss_pred ccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccCCCCC
Q 000575 882 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 961 (1413)
Q Consensus 882 L~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~~~ 961 (1413)
+..++|++||+||||.+||..+..++++..|++.+||+|||||++|++.|||++++||.++.+.+...|...+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999887663444
Q ss_pred chhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHH
Q 000575 962 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1041 (1413)
Q Consensus 962 ~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~~~~I 1041 (1413)
......+|+.+++.+|+||++.++.. .||+..+.++.++|+++|+++|+.+....+..++... +........+
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~ 282 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHH
T ss_pred ccccccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 45667899999999999999999843 7999999999999999999999988766554433222 2344677889
Q ss_pred HHHHHHHHHHccCcccc
Q 000575 1042 LLMLLRLRQACDHPLLV 1058 (1413)
Q Consensus 1042 L~~LlrLRq~c~HP~Lv 1058 (1413)
+..+++|||+|+||.|+
T Consensus 283 ~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHhCCcccC
Confidence 99999999999999874
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=379.58 Aligned_cols=397 Identities=26% Similarity=0.400 Sum_probs=289.2
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
..|.+||.+|++|+......+ --+|||||||||||+++|.+.......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 469999999999999877644 348999999999999998887442211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 804 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~ 804 (1413)
....+|.||++|.+.+.+|..|+..|.+ .+.+..|+|....+......
T Consensus 342 -----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirep 389 (696)
T KOG0383|consen 342 -----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREP 389 (696)
T ss_pred -----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhcc
Confidence 1123578999999999999999999976 68888899986543211000
Q ss_pred C---CC-EEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccc-cccCCCCCCCccccccc
Q 000575 805 K---FD-VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRK-GSKQKKGPDGLLLDIVA 879 (1413)
Q Consensus 805 ~---yD-VVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~-~~~~kk~~~~~~~~~~~ 879 (1413)
. -| -+.+.-.+..+ +.....+.. ....+ .+.+...
T Consensus 390 e~s~ed~~~~~~~~i~~~-----------------------------------~~~s~~k~~vl~~s~-----~~~~~~~ 429 (696)
T KOG0383|consen 390 EFSFEDSSIKSSPKISEM-----------------------------------KTESSAKFHVLLPSY-----ETIEIDQ 429 (696)
T ss_pred cccccccccccCCccccc-----------------------------------cchhhcccccCCCch-----hhcccCH
Confidence 0 00 00000000000 000000000 00000 0112224
Q ss_pred CCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccCCC
Q 000575 880 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 959 (1413)
Q Consensus 880 ~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~ 959 (1413)
+.+..+.|..+|+||+|++||..+..++.+..-...++++|||||.+|++.+|+++|+||.++.|.+..+|.+.|..
T Consensus 430 ~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d--- 506 (696)
T KOG0383|consen 430 SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD--- 506 (696)
T ss_pred HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch---
Confidence 45889999999999999999999999999988899999999999999999999999999999999999999887753
Q ss_pred CCchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHH
Q 000575 960 KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYV 1039 (1413)
Q Consensus 960 ~~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~~~ 1039 (1413)
......+++|+.++.+.|+||.|.|+++ ..|++++-++.+.|++-|+++|..++...-..+.. | .+..
T Consensus 507 ~~~~~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~----~---~~~~ 574 (696)
T KOG0383|consen 507 ISCEEQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA----G---VHQY 574 (696)
T ss_pred hhHHHHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh----c---chhH
Confidence 2234567899999999999999999998 69999999999999999999999887554333222 2 2334
Q ss_pred HHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhh
Q 000575 1040 NILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQC 1119 (1413)
Q Consensus 1040 ~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~C 1119 (1413)
.++..+|.||+.|+||++....... .. ...++.+.|
T Consensus 575 s~~n~~mel~K~~~hpy~~~~~e~~------------~~--~~~~~~~~l------------------------------ 610 (696)
T KOG0383|consen 575 SLLNIVMELRKQCNHPYLSPLEEPL------------EE--NGEYLGSAL------------------------------ 610 (696)
T ss_pred HHHHHHHHHHHhhcCcccCcccccc------------cc--chHHHHHHH------------------------------
Confidence 4677889999999999987531100 00 000000000
Q ss_pred hhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccccHHHHHHHHHHHhh
Q 000575 1120 ICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSL 1199 (1413)
Q Consensus 1120 i~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l 1199 (1413)
...+.|+..|...+++
T Consensus 611 ---------------------------------------------------------------~k~~~k~~~l~~~~~~- 626 (696)
T KOG0383|consen 611 ---------------------------------------------------------------IKASGKLTLLLKMLKK- 626 (696)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHH-
Confidence 0013444444444443
Q ss_pred cCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHH
Q 000575 1200 AKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1279 (1413)
Q Consensus 1200 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~ 1279 (1413)
++..++||+||+|++.+||+|+.++.
T Consensus 627 ------------------------------------------------------l~~~ghrvl~~~q~~~~ldlled~~~ 652 (696)
T KOG0383|consen 627 ------------------------------------------------------LKSSGHRVLIFSQMIHMLDLLEDYLT 652 (696)
T ss_pred ------------------------------------------------------HHhcchhhHHHHHHHHHHHHhHHHHh
Confidence 23378999999999999999999999
Q ss_pred hcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccc
Q 000575 1280 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLG 1323 (1413)
Q Consensus 1280 ~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~i~VLL~StkaGg~G 1323 (1413)
..+ .|.|+||..+...|++++++||.. ..-.++|+||+|||+|
T Consensus 653 ~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 653 YEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999 999999999999999999999964 5688999999999998
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-34 Score=356.81 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=102.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.++|+|||++++..++.+.+.|. . ..++|.|+..+|.+++++|+..+.++|||+| ++|++|+||..|++||+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeC
Confidence 57899999999999888888773 3 3489999999999999999986788999976 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCCc-----EEEEEEEeCCCHHHHHHH
Q 000575 1337 LWW-NPTTEDQAIDRAHRIGQTRP-----VSVLRLTVKNTVEDRILA 1377 (1413)
Q Consensus 1337 p~W-NP~~e~QAiGRvhRIGQtr~-----V~V~rLi~kdTIEErIl~ 1377 (1413)
+++ ++..+.||+||+.|.+..+. .++|.|+.++|.|+..-.
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 986 99999999999999987543 789999999999987654
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=2e-29 Score=328.46 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=112.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC--------CCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGs--------ms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~ 1328 (1413)
++.|+|||+++..++++|.+.|...|+.+.+++|. |+..+|.+++++|++ ++++||| +|.++++|+|++.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~vLv-aT~~~~eGldi~~ 441 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNVLV-STSVAEEGLDIPS 441 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCccc
Confidence 57899999999999999999999999999999987 899999999999998 6788887 6689999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000575 1329 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1386 (1413)
Q Consensus 1329 An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~ 1386 (1413)
+++||+|||+|||.+..|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999999999999998888888765 678999999999999887766665554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=8.1e-24 Score=247.02 Aligned_cols=458 Identities=17% Similarity=0.168 Sum_probs=288.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
+.-+.||..-++-.+.+ -.+++-.+|||||+.|+.+|+.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 45677999988887764 25899999999999997777643211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Cccc
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE 802 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~~~~ 802 (1413)
-.+..|+++|+ .|+.|-.+-+.+.+. -+.-.+..+.|.-+.. ....
T Consensus 57 -------------------------------~~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 -------------------------------FGGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred -------------------------------cCCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHH
Confidence 01258999998 589999999987765 3457888999987755 4466
Q ss_pred ccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCc
Q 000575 803 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 882 (1413)
Q Consensus 803 L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL 882 (1413)
|.+..|++.|-+++.+++.. +.+
T Consensus 105 w~~~kVfvaTPQvveNDl~~---------------------------------------------------------Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLKA---------------------------------------------------------GRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHhc---------------------------------------------------------Ccc
Confidence 88999999999999875421 223
Q ss_pred cccCccEEEEcCCcccCChhhH--HHHHHHhccc-CcEEEEecccCCCchHHHHHhhhhcccCCccchHHHHhhhccCCC
Q 000575 883 AKVGWFRVVLDEAQSIKNHRTQ--VARACWGLRA-KRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 959 (1413)
Q Consensus 883 ~~i~W~rVIlDEAH~IKN~~T~--~skal~~L~a-k~RwlLTGTPiqN~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~ 959 (1413)
.--.+.+||+||||+.-+..+- .++....-.. .+.++|||||= ++.+.+...+.=|+.+.
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~---------------- 190 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEK---------------- 190 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcce----------------
Confidence 3345678999999998654333 3333322233 36899999993 34444444444443321
Q ss_pred CCchhhHHHHHHHHhhhheeeccc-cccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccch-
Q 000575 960 KNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN- 1037 (1413)
Q Consensus 960 ~~~~~~~~rL~~lL~~~mLRRtK~-dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g~~~~~- 1037 (1413)
+.+|.-.+ ||.. .+-++..+.++|+++++=.++-+.+....+..++.+.+.|-....
T Consensus 191 ----------------vevrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 191 ----------------VEVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred ----------------EEEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 22222111 1211 455677889999999988888777777777777777766643321
Q ss_pred ---HHHHHHHHHHHHHHccCcccccccCchhhhhh--HHHHHhhc------hH-HHHHHHHHHhhhhccccccCCCCCCc
Q 000575 1038 ---YVNILLMLLRLRQACDHPLLVKGFDSNSLLRS--SVEMAKKL------PQ-ERQMYLLNCLEASLAICGICNDPPED 1105 (1413)
Q Consensus 1038 ---~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~--s~e~a~~l------~~-e~~~~ll~~le~~~~~C~iC~d~~~~ 1105 (1413)
...++... ..+.... +. . ....++. ....+.++ .. .....+...|+.....|..
T Consensus 250 ~~~~kdl~~~~-~~~~~~a-~~----~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~------- 315 (542)
T COG1111 250 PVSKKDLLELR-QIRLIMA-KN----E-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK------- 315 (542)
T ss_pred cccHhHHHHHH-HHHHHhc-cC----c-cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc-------
Confidence 22333332 1211111 10 0 1111111 01111111 10 0011111111111000000
Q ss_pred chhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhhcccccccCCCCCCCCCCCCCcccccCCccCCcccc
Q 000575 1106 AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYN 1185 (1413)
Q Consensus 1106 ~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~l~~~~~~~~~~~~ip~~~s~~~~~~~~~~~~~~~~ 1185 (1413)
. .......+..+.-|.++.. .. .........
T Consensus 316 ---------------------~-----~sk~a~~l~~d~~~~~al~-~~----------------------~~~~~~~v~ 346 (542)
T COG1111 316 ---------------------G-----GSKAAKSLLADPYFKRALR-LL----------------------IRADESGVE 346 (542)
T ss_pred ---------------------c-----chHHHHHHhcChhhHHHHH-HH----------------------HHhccccCC
Confidence 0 0000000000001111100 00 000112234
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEc
Q 000575 1186 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFS 1265 (1413)
Q Consensus 1186 ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~KvIIFS 1265 (1413)
.+|++.+.++|++..+ +..+.++|||+
T Consensus 347 HPKl~~l~eilke~~~-----------------------------------------------------k~~~~RvIVFT 373 (542)
T COG1111 347 HPKLEKLREILKEQLE-----------------------------------------------------KNGDSRVIVFT 373 (542)
T ss_pred CccHHHHHHHHHHHHh-----------------------------------------------------cCCCceEEEEe
Confidence 6788888888887432 12568999999
Q ss_pred ccHHHHHHHHHHHHhcCCcEE-ecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1266 QWTKMLDLLEASLKDSSIQYR-RLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1266 q~t~~LdlLe~~L~~~gI~~~-rldG--------sms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
+|++++++|..+|...|+... ++-| +|++++..++|++|+. +++.||| +|..|-+||++...+-||+||
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEec
Confidence 999999999999999988775 5544 6999999999999999 9999999 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1387 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~ 1387 (1413)
|.=+|-+..||.||.+| ++.=.||-|+++||-|+.-+....+|.+.+.
T Consensus 452 pvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 452 PVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred CCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 99999999999999888 4667888999999999877777766665443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-22 Score=247.14 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=107.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.+++||+.....++.|...|...|+ ...++|.++..+|.+++++|+..+ +.||+ +.+.+.+|+++..|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv-~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV-TVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE-EeeeccceecCCCCcEEEEeC
Confidence 368999999999999999999999999 899999999999999999999944 77777 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhcc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000575 1337 LWWNPTTEDQAIDRAHRI-GQTRP--VSVLRLTVKNTVEDRILALQQK 1381 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRI-GQtr~--V~V~rLi~kdTIEErIl~lq~~ 1381 (1413)
|.=++..+.|++||+.|. ..+.. +.+|-++.+++.+..+......
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999994 44444 7777788888888877765553
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=1.6e-22 Score=250.89 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=103.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+..+..++.|...|+..|+++..++|.|+.++|.++++.|+. +...|||.|.+..++|+++...++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec
Confidence 45788999999999999999999999999999999999999999999986 77789998889999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc-EEEEEEEeCCCH
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRP-VSVLRLTVKNTV 1371 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~-V~V~rLi~kdTI 1371 (1413)
|.-+.....|++||++|.|..++ ++||.|+-.-.+
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 99999999999999999987664 899999864443
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=3.3e-19 Score=205.46 Aligned_cols=111 Identities=24% Similarity=0.270 Sum_probs=93.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
++.|+|||+...-.|...+..|. -+ .|.|.++..+|-+++++|+.++.+.-+++| ++|-..++|..|+.+|-+.
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~---Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLG---KP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcC---Cc--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 68999999998766655544443 33 478999999999999999999999888888 9999999999999999998
Q ss_pred CCC-CcChHHHHHHhhhccCCCC----cEEEEEEEeCCCHHH
Q 000575 1337 LWW-NPTTEDQAIDRAHRIGQTR----PVSVLRLTVKNTVED 1373 (1413)
Q Consensus 1337 p~W-NP~~e~QAiGRvhRIGQtr----~V~V~rLi~kdTIEE 1373 (1413)
.+. .-..|+||.||+-|--... .++.|-|+.+||.|-
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 876 5567899999999965322 389999999999874
No 28
>PTZ00110 helicase; Provisional
Probab=99.81 E-value=6.1e-18 Score=211.73 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=99.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.|+|||++....++.|.+.|+..|+....++|.++.++|.+++++|++ +.++||| +|.+++.|||+..+++||+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILV-aTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMI-ATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEE-EcchhhcCCCcccCCEEEEeC
Confidence 35799999999999999999999999999999999999999999999998 7788877 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
+++++....||+||+.|.|.+-. ++.|+.++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999998654 45556655
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.81 E-value=8.1e-18 Score=207.37 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=99.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||++....++.+...|...|+....++|.|+..+|+.++++|++ +.++||| +|.+++.|||+...++||++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLV-aTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLV-ATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EecccccccchhcCCeEEEec
Confidence 34689999999999999999999999999999999999999999999997 8899988 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
++.++....||+||+.|.|++- ..+.|+..+
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999764 445556554
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=1.4e-17 Score=203.79 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=96.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
...++|||+.....++.|...|...|+....++|.|+..+|..++++|+. +.++||| +|.+++.|||+..+++||+||
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLV-aTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLV-ATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCccCCCCCEEEEEC
Confidence 34789999999999999999999999999999999999999999999997 8899998 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEE
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V 1362 (1413)
+++++....||+||+.|.|.+-.+.+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999998755333
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2.3e-17 Score=203.68 Aligned_cols=104 Identities=22% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
++.+.|||+......+.+...|+..|+....++|+|+.++|.+++++|.. +.++||+ +|.+.|.|+|+...++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCCcccceEEEEeC
Confidence 35677999999999999999999999999999999999999999999996 8899998 668999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEE
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V 1362 (1413)
++.++....|++||++|.|+.....+
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 99999999999999999998876444
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.78 E-value=3.2e-17 Score=204.44 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=96.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
.++|||+.....++.|...|.. .|+.+..++|+++.++|..++++|.. ++++||| +|.+++.|||+..+++||+||+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILV-aTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIV-ATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-EecHhhccCCcccCCEEEEeCC
Confidence 5799999999999999999975 69999999999999999999999998 8899988 6799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
+.++....|++||++|.|++- +++.|+..+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 999999999999999999754 444566544
No 33
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.78 E-value=1.4e-16 Score=196.74 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=96.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccC
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1325 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~---~gI~~~rldG--------sms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLN 1325 (1413)
+..++|||+.++..++.|..+|.. .|++...+-| +|+..+..++++.|++ |++.||| +|..|-|||+
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCC
Confidence 568999999999999999999983 2555444433 6899999999999999 9999999 6699999999
Q ss_pred ccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000575 1326 MVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1389 (1413)
Q Consensus 1326 Lq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~ 1389 (1413)
...++-||-||..-||-+..||+|| +| ++.=+++-|.. +.-+-.--..+..|+.+....
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~ 548 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQT 548 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999 55 55545555555 432222233344444444333
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.78 E-value=3.6e-17 Score=199.55 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=98.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..|+|||++....++.|...|...|+.+..++|.|+.++|.+++++|++ ++++||| +|.+++.|||+...++||+||+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEEEeCC
Confidence 4789999999999999999999999999999999999999999999998 8899998 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
++++....|++||+.|.|++-. ++.|+.+
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCchhheEeccccccCCCCCee--EEEEeCH
Confidence 9999999999999999997643 4445554
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.77 E-value=4.1e-17 Score=200.79 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=97.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..++|||+......+.|...|...|+....++|.|+.++|.+++++|++ +.++||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7889988 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
+.++....|++||+.|.|++-. .+.|+..+
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~~ 352 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGE--ALSLVCVD 352 (456)
T ss_pred CCCHHHhhhhccccccCCCCee--EEEEecHH
Confidence 9999999999999999998764 33345443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=8.7e-17 Score=202.17 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=98.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+.....++.|.+.|...++.+..++|.|+..+|..+++.|++ ++++||| +|.+++.|||+...++||+||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEEEcC
Confidence 45789999999999999999999999999999999999999999999997 8899998 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
++|++....|++||+.|.|.+-. .+.|+..
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999998654 3345544
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.76 E-value=9.7e-17 Score=194.15 Aligned_cols=109 Identities=18% Similarity=0.322 Sum_probs=98.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..++|||+.....++.+...|...++....++|.++.++|..+++.|++ +.++||+ +|.++++|+|+...++||++|+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLv-aT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLI-TTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-EcccccCCcCcccCCEEEEECC
Confidence 3678999999999999999999999999999999999999999999997 8899988 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1370 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdT 1370 (1413)
+.++....|++||++|.|..- .++.|+.++.
T Consensus 345 p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~ 375 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRKG--VAINFVTPDD 375 (401)
T ss_pred CCCHHHEeecccccccCCCCc--eEEEEEcHHH
Confidence 999999999999999998653 4555665543
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.75 E-value=4.1e-16 Score=197.42 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=94.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..++|||+.-....+.|...|...|+....++|.|+..+|.+++++|+. +.++||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILV-ATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILI-ATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcchHhcCCCcccCCEEEEeCC
Confidence 4679999999999999999999999999999999999999999999998 8888888 7799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCc
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
+.++....|++||+.|.|.+-.
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCHHHHHHHhccccCCCCcce
Confidence 9999999999999999997654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=1.5e-16 Score=201.85 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=94.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+......+.+...|...|+....++|+|+.++|.+++++|.. +.++||| +|.+.|.|||+...++||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 45788999999999999999999999999999999999999999999997 7888888 668999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
++.+.....|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997655
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=1.8e-16 Score=196.10 Aligned_cols=108 Identities=20% Similarity=0.334 Sum_probs=98.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..|+|||++....++.|...|...|+.+..++|.++.++|.++++.|+. ++++||| +|.++++|||+...++||++++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7889888 6799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
++++....|++||++|.|+.-. ++.|+.++
T Consensus 413 P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 413 PEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 9999999999999999998653 44445443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=2e-16 Score=200.75 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=95.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
+.+.|||+......+.+...|...|+++..++|+|+.++|..++++|.. +.++||+ +|.+.|.|+|+...++||++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 4678999999999999999999999999999999999999999999998 7788888 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEE
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVS 1361 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~ 1361 (1413)
+++.....|++||++|.|+.....
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.72 E-value=1.1e-15 Score=194.57 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=69.7
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCc
Q 000575 1281 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1281 ~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~W-NP~~e~QAiGRvhRIGQtr~ 1359 (1413)
.++.+..++|.|+.++|.+++++|.+ ++++||| +|.+.++|+|+..++.||+++++. .-+...|++||+.|-|++-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 36788999999999999999999998 7888888 668999999999999999999874 67788999999999987654
Q ss_pred EE
Q 000575 1360 VS 1361 (1413)
Q Consensus 1360 V~ 1361 (1413)
+.
T Consensus 559 ~i 560 (630)
T TIGR00643 559 CL 560 (630)
T ss_pred EE
Confidence 33
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=9.8e-16 Score=202.71 Aligned_cols=106 Identities=14% Similarity=0.322 Sum_probs=85.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CC---cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS------SI---QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1328 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~------gI---~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~ 1328 (1413)
+.|.|||+....+++.+.+.|.+. ++ .+..++|.++ ++.+++++|.++..+ .++++.+..++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCCCccc
Confidence 479999999999999888887653 22 3456899975 678899999884434 45558899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCC---CCcEEEEEEE
Q 000575 1329 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRLT 1366 (1413)
Q Consensus 1329 An~VI~lDp~WNP~~e~QAiGRvhRIGQ---tr~V~V~rLi 1366 (1413)
..+||++.|.-++....|++||+-|+-- |....|+.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 4445665553
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.70 E-value=2.7e-15 Score=195.47 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
+.+++||++....++.+...|+.. ++++..++|.|+.++|.+++++|.+ ++++||| +|.+.+.|+++..+++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEEEEe
Confidence 568899999999999999999874 7899999999999999999999998 8889888 67999999999999999999
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1336 DLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1336 Dp~-WNP~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
+++ +......|++||++|-|++- ++|.|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 885 45567889999999988654 45555544
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.69 E-value=3.5e-15 Score=198.18 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=89.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
+.+++||++....++.+.+.|.+. ++++..++|.|+.++|.+++.+|.+ ++++||| +|.+.+.||++..+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEe
Confidence 467899999999999999999876 7889999999999999999999998 8899988 66999999999999999987
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCc
Q 000575 1336 DLW-WNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1336 Dp~-WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
++. |......|++||++|.|++--
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~ 911 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAY 911 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceE
Confidence 664 677789999999999988753
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.68 E-value=7.6e-15 Score=188.37 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCcE
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPV 1360 (1413)
Q Consensus 1282 gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~W-NP~~e~QAiGRvhRIGQtr~V 1360 (1413)
++++..++|+|+.++|++++++|.+ ++++||| +|.+.++|+|+..++.||+++++. ..+...|++||++|-|.+-
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g-- 580 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS-- 580 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--
Confidence 4789999999999999999999998 7888888 779999999999999999999874 5678889999999998764
Q ss_pred EEEEEE
Q 000575 1361 SVLRLT 1366 (1413)
Q Consensus 1361 ~V~rLi 1366 (1413)
+++.+.
T Consensus 581 ~~ill~ 586 (681)
T PRK10917 581 YCVLLY 586 (681)
T ss_pred EEEEEE
Confidence 444444
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.66 E-value=7.4e-15 Score=188.89 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=95.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
+.+.|||+......+.|...|...|+....|+|+|+.++|..++++|.. ++++||| +|.+.|.|||+...+.||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLV-ATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIIC-ATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEE-EechhhcCCCccCCcEEEEcCC
Confidence 3567999999999999999999999999999999999999999999998 7889988 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEE
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
+-+.....|++||++|.|+.-.+..+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999988764443
No 48
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=9.1e-15 Score=176.16 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=95.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.|+|||++...+.+.|++.|+..+++.+.|||..++.+|+.+++.|.+ ++..||| .|..++.||++...++||+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCC
Confidence 56799999999999999999999999999999999999999999999998 8888888 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
+|=|...+.+|+||..|-|++-.
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999887764
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.60 E-value=1.6e-13 Score=177.10 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=98.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS--------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1329 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~--------gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~A 1329 (1413)
+.++|||++.....+.|...|+.. +.++..++|+++.++|.++.++|.+ +.++||+ +|.+.+.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEE-ECchHhccCCcccc
Confidence 468999999999999999988753 5677889999999999999999998 8899887 77999999999999
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000575 1330 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1377 (1413)
Q Consensus 1330 n~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~ 1377 (1413)
++||+++.|-+.....||+||+.|.|+.-- ++.++..+..|..++.
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999999999999999999997653 3334444556655433
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.59 E-value=2.1e-13 Score=179.32 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=91.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH 1331 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~ 1331 (1413)
+.++|||++.....+.+...|... +..+..++|+++.++|..+.++|++ +.++||| +|.+.+.|||+...++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999998762 4678889999999999999999998 7888888 6699999999999999
Q ss_pred EEEEcCCCCcChHHHHHHhhhcc-CCCCcEEEE
Q 000575 1332 VLLLDLWWNPTTEDQAIDRAHRI-GQTRPVSVL 1363 (1413)
Q Consensus 1332 VI~lDp~WNP~~e~QAiGRvhRI-GQtr~V~V~ 1363 (1413)
||+++++.+.....||+||++|- |+...-.++
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 99999999999999999999985 555544444
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.58 E-value=1.8e-13 Score=177.93 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=67.0
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec-----CCCCcChHHHHHHhhhcc
Q 000575 1284 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-----LWWNPTTEDQAIDRAHRI 1354 (1413)
Q Consensus 1284 ~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~----lD-----p~WNP~~e~QAiGRvhRI 1354 (1413)
.+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. || .+.++....|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 45678999999999999999998 8899999 6699999999988877775 66 466778899999999999
Q ss_pred CCCCcEEEEEEE
Q 000575 1355 GQTRPVSVLRLT 1366 (1413)
Q Consensus 1355 GQtr~V~V~rLi 1366 (1413)
|....=.++-+.
T Consensus 383 g~d~~G~~ii~~ 394 (737)
T PRK02362 383 GLDPYGEAVLLA 394 (737)
T ss_pred CCCCCceEEEEe
Confidence 986553444344
No 52
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=1.5e-12 Score=166.62 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=74.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc-----CCcEEecCCCCCHH---------------------HHHHHHHHHhcCCCcc
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS-----SIQYRRLDGTMSVF---------------------ARDKAVKDFNTLPEVS 1311 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~-----gI~~~rldGsms~~---------------------qR~~aI~~Fn~d~~i~ 1311 (1413)
+.|.+||+.....+..+...|.+. +...+.++|+.+.+ ....++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 356666666666665555555432 23334455543322 3357999998867788
Q ss_pred EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc-CC-CCcEEEEEEEe
Q 000575 1312 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQ-TRPVSVLRLTV 1367 (1413)
Q Consensus 1312 VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRI-GQ-tr~V~V~rLi~ 1367 (1413)
+||.. ....+|.+....+++++.-|-=.. ...|||||+.|+ +- |....|+.|+-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 88754 899999999999999998887655 468999999995 43 34467777654
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.53 E-value=1.3e-12 Score=168.70 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.5
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---------CCcChHHHHHHhhhccC
Q 000575 1285 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---------WNPTTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1285 ~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~---------WNP~~e~QAiGRvhRIG 1355 (1413)
+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+ .+||+.+.+ +.+....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 4567999999999999999997 8899988 6699999999985 688887643 45567789999999999
Q ss_pred CCCc
Q 000575 1356 QTRP 1359 (1413)
Q Consensus 1356 Qtr~ 1359 (1413)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7655
No 54
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=5.7e-14 Score=141.87 Aligned_cols=105 Identities=31% Similarity=0.479 Sum_probs=96.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+.....++.+...|+..++.+..++|+++..+|..++++|+. +...+++ ++.++++|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili-~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLV-ATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EcChhhcCcChhhCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 5555555 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
++|++....|++||++|.||+..|+++
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998877653
No 55
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.3e-12 Score=157.28 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=102.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
.++|||+.-....+.|...|...|+....|+|.+++.+|.+++++|++ +.++||| .|++++.||++...++||+||++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLV-aTDvaaRGiDi~~v~~VinyD~p 351 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLV-ATDVAARGLDIPDVSHVINYDLP 351 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-EechhhccCCccccceeEEccCC
Confidence 479999999999999999999999999999999999999999999996 8999999 55999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000575 1339 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1382 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K 1382 (1413)
.++....+||||..|.|.+- ..+.|+.. .-|.+.+...++.
T Consensus 352 ~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 99999999999999999443 44445655 2244444433333
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.50 E-value=2.4e-12 Score=153.78 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHH----HHHHhcCCCccEEEeeccccccccCccccC
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKA----VKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~a----I~~Fn~d~~i~VLL~StkaGg~GLNLq~An 1330 (1413)
.+.++|||++.....+.+...|++.+. .+..++|.++..+|.+. ++.|.+ +..+||| +|.+.+.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilv-aT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIV-ATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEE-ECcchhceecc-CCC
Confidence 457999999999999999999988776 48999999999999764 889987 6777777 77999999999 588
Q ss_pred EEEEEcCCCCcChHHHHHHhhhccCCCC----cEEEEEEEeCC
Q 000575 1331 HVLLLDLWWNPTTEDQAIDRAHRIGQTR----PVSVLRLTVKN 1369 (1413)
Q Consensus 1331 ~VI~lDp~WNP~~e~QAiGRvhRIGQtr----~V~V~rLi~kd 1369 (1413)
.||.++.+ +....||+||++|.|.+. .|+|+.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88887665 778899999999999764 35555544444
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.49 E-value=3.2e-12 Score=165.93 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=64.1
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-------EcCCCCc-ChHHHHHHhhhccC
Q 000575 1284 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-------LDLWWNP-TTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1284 ~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~-------lDp~WNP-~~e~QAiGRvhRIG 1355 (1413)
.+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. +..++-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 46778999999999999999998 8899998 6799999999987776663 2222222 35689999999998
Q ss_pred CCCcEEEEEEEeCC
Q 000575 1356 QTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1356 Qtr~V~V~rLi~kd 1369 (1413)
....-.++-+...+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76654455444443
No 58
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=5.1e-12 Score=144.09 Aligned_cols=123 Identities=26% Similarity=0.278 Sum_probs=108.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.-+||||.-..+.+.+.-.|+..|+..+.++|.|+...|..+++.|+. +...||+ +|+.|+.||+.+.+++||+||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecC
Confidence 45789999999999999999999999999999999999999999999998 7778888 679999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH--HHHHHHHHHH
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED--RILALQQKKR 1383 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEE--rIl~lq~~K~ 1383 (1413)
.|-+-..++.|+||+.|.| +.-.+..|++.-.||- ||-....+|.
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999 6667778888766653 5555555554
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.41 E-value=6.4e-12 Score=158.81 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=83.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq--------- 1327 (1413)
.+.++|||+......+.|...|...|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++.
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~VlI-ATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAVTV-ATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeEEE-EccccccccCCCCCccccccC
Confidence 57899999999999999999999999999999999998777666665554 25665 789999999998
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000575 1328 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1328 ~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
..++|+.++++-+. .+.|++||+.|.|..-.
T Consensus 499 GL~vIit~~~ps~r-id~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 499 GLAVIGTERMENSR-VDLQLRGRSGRQGDPGS 529 (762)
T ss_pred CeEEEEecCCCCcH-HHHHhhhcccCCCCcee
Confidence 67888889998554 55999999999997764
No 60
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.41 E-value=2.9e-13 Score=125.58 Aligned_cols=78 Identities=33% Similarity=0.515 Sum_probs=73.0
Q ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccC
Q 000575 1276 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1276 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIG 1355 (1413)
+.|+..|+.+..++|.++.++|.++++.|+. +...||+ +|.++++|+||+.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS-GEIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT-TSSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc-cCceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3688999999999999999999999999999 6667777 5699999999999999999999999999999999999998
No 61
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.40 E-value=3.3e-11 Score=147.86 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcChHHHHHHhhhccCCC
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1282 gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~-WNP~~e~QAiGRvhRIGQt 1357 (1413)
++.+..++|.|+.+++++++.+|++ ++++||| +|.+.-+|+|+..|+.+|+.++. +--+..-|--|||+|=+..
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~q 581 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQ 581 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcc
Confidence 4567889999999999999999998 8899998 77999999999999999999876 5667888999999994433
No 62
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.39 E-value=8.7e-13 Score=141.02 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=103.9
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
.+|++||.+++.-+++........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999998887544321125689999999999999998886421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeC--CC------
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHG--SS------ 795 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G--~~------ 795 (1413)
.++|||||. +|+.||.+++..+... ...+....- ..
T Consensus 51 ---------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ---------------------------------RKVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ---------------------------------CEEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ---------------------------------cceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 048999998 6889999999766542 111111100 00
Q ss_pred -CCC-----CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000575 796 -RTK-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 869 (1413)
Q Consensus 796 -r~k-----~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~ 869 (1413)
... ........++++++|+.+....... ...... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------~~~~~~---------------------------~~ 137 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE-----------KKIDES---------------------------AR 137 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhcccc-----------cccccc---------------------------hh
Confidence 000 1122457889999999997532100 000000 00
Q ss_pred CCCcccccccCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccC
Q 000575 870 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 925 (1413)
Q Consensus 870 ~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPi 925 (1413)
....+..-.+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 --------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 --------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred --------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00113445678999999999965432 66666688999999999995
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=4.5e-11 Score=152.51 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=93.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCc---cccC---
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM---VAAC--- 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNL---q~An--- 1330 (1413)
.+.++|||+......+.|...|...|+++..++|.+...+|..+..+|+. .+|+| +|..+|.|+++ ....
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---GAVTV-ATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---CeEEE-EccchhcCcCCCccccccccc
Confidence 57899999999999999999999999999999999988777777666654 25666 77999999999 4666
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1331 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1331 --~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
|||.+|++-|+..+.|++||+.|.|+.-... .|+ |.|+.++.+
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~ 547 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKR 547 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHh
Confidence 9999999999999999999999999875432 223 446665543
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.39 E-value=1.4e-10 Score=148.17 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=85.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-----HHHHHHhc----CC------CccEEEeeccccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-----KAVKDFNT----LP------EVSVMIMSLKAAS 1321 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-----~aI~~Fn~----d~------~i~VLL~StkaGg 1321 (1413)
.+.++|||++....++.|.+.|+..++ ..++|.|+..+|. +++++|.. .. ..+ +|++|++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~-ILVATdVae 347 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTV-YLVCTSAGE 347 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccce-EEeccchhh
Confidence 357899999999999999999999887 8999999999999 78999976 11 244 456889999
Q ss_pred cccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc--EEEEEE
Q 000575 1322 LGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP--VSVLRL 1365 (1413)
Q Consensus 1322 ~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~--V~V~rL 1365 (1413)
.||++.. ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 8999876664 689999999999998644 454433
No 65
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2e-11 Score=133.91 Aligned_cols=110 Identities=20% Similarity=0.347 Sum_probs=100.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
...||||+-....|+|.+.|+...+.+..++|.|+.++|++++++|+. +..+||| +|++-+.|++.+..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEE-EechhhccCCcceeEEEEecCCC
Confidence 357999999999999999999999999999999999999999999999 7888988 78999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000575 1339 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIE 1372 (1413)
-|+.....||||.+|.|.+- .+.+|+..+.++
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 99999999999999999775 456677665543
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=1.8e-10 Score=144.27 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=90.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq---~An--- 1330 (1413)
.+..+|||+......+.|...|...|+++..|+|.+. +|++.+..|.. ....|+| +|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag-~~g~VlV-ATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAG-QRGRITV-ATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcC-CCCcEEE-EccchhcccCcCCccchhhcC
Confidence 3567999999999999999999999999999999865 66666777765 3345666 779999999987 333
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1331 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1331 --~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
+||.+|.+=|...+.|++||+.|.|..-.+ ..|+ |.|+.++.+
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~ 592 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQS 592 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHh
Confidence 999999999999999999999999976432 2233 446655543
No 67
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.34 E-value=8e-12 Score=133.83 Aligned_cols=167 Identities=28% Similarity=0.277 Sum_probs=111.4
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
.++++||.+++.+++... +..++...+|.|||.+++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 468999999999998431 468999999999999887777543211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 803 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L 803 (1413)
.+.+++|||+|. .+..||..++.+.+..........+++.........+
T Consensus 52 ------------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 52 ------------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred ------------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 012458999994 6889999999988763322556666665432222222
Q ss_pred c--CCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000575 804 A--KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 881 (1413)
Q Consensus 804 ~--~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~p 881 (1413)
. .++++++|++.+...+.. ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2 238999999988653211 00
Q ss_pred ccccCccEEEEcCCcccCC-hh-hHHHHHHHhc-ccCcEEEEecccCCCchHHHH
Q 000575 882 LAKVGWFRVVLDEAQSIKN-HR-TQVARACWGL-RAKRRWCLSGTPIQNAIDDLY 933 (1413)
Q Consensus 882 L~~i~W~rVIlDEAH~IKN-~~-T~~skal~~L-~ak~RwlLTGTPiqN~l~DLy 933 (1413)
+....|.++|+||||.+.+ .. ......+..+ ...+++++||||..+.....+
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHH
Confidence 2234578899999999985 33 3333344444 578899999999754433333
No 68
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.33 E-value=1.3e-10 Score=149.22 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHHHhc--CCcEEecCCCCC--HHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCc--
Q 000575 1271 LDLLEASLKDS--SIQYRRLDGTMS--VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNP-- 1341 (1413)
Q Consensus 1271 LdlLe~~L~~~--gI~~~rldGsms--~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~---WNP-- 1341 (1413)
.+.+++.|++. ++++.++|+.+. .++|++++++|.+ +++.||| .|...+.|+++.....|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 45566666654 788899999986 4679999999998 7889998 56889999999999999888754 333
Q ss_pred -------ChHHHHHHhhhccCCCCcEEEEEEEe
Q 000575 1342 -------TTEDQAIDRAHRIGQTRPVSVLRLTV 1367 (1413)
Q Consensus 1342 -------~~e~QAiGRvhRIGQtr~V~V~rLi~ 1367 (1413)
....|+.||+.|.|....|.+..+-.
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 46789999999988777776655433
No 69
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.32 E-value=9.7e-11 Score=145.19 Aligned_cols=107 Identities=12% Similarity=0.224 Sum_probs=84.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc----CCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS----SIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~----gI~-~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V 1332 (1413)
-.|.|||+.-.++++.|...|... +.. ...|+|... +-++.|+.|-.......+.+|.+-.-.|++...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 479999999999999999999765 223 356777744 5566888888743333444488999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhcc-------CCCCc-EEEEEEE
Q 000575 1333 LLLDLWWNPTTEDQAIDRAHRI-------GQTRP-VSVLRLT 1366 (1413)
Q Consensus 1333 I~lDp~WNP~~e~QAiGRvhRI-------GQtr~-V~V~rLi 1366 (1413)
+|+-+.-+-....|.+||.-|+ ||.|. .+|+.|+
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999997 45554 6666554
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.31 E-value=3e-11 Score=151.89 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=91.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc-------c
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------A 1329 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~-------A 1329 (1413)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.. .
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCC
Confidence 67899999999999999999999999999999999 7799999999987 5667777 6699999999887 6
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000575 1330 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1330 n~VI~lDp~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
-|||.++++-++..+.|++||+.|.|+.-.
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 799999999999999999999999998865
No 71
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.30 E-value=1.4e-10 Score=136.30 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=97.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
...+|||.+....+|.|+..|++.|+++++|||+-+++||+.++..|++ +...||| .|.++|.||+....++||+||.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlV-aTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILV-ATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEE-EecccccCCCCCccceeeecch
Confidence 4679999999999999999999999999999999999999999999998 6677888 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1370 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdT 1370 (1413)
.=+-.....||||..|-|+.-. -+..|...+|
T Consensus 595 aksieDYtHRIGRTgRAGk~Gt-aiSflt~~dt 626 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGT-AISFLTPADT 626 (673)
T ss_pred hhhHHHHHHHhccccccccCce-eEEEeccchh
Confidence 9999999999999999998763 3333334443
No 72
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.30 E-value=7e-11 Score=138.34 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=93.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V 1332 (1413)
...++|+|+........+...|+ ...+.+-.+.|+.+.+.|.+.+++|+. ++++|||+| ++.+.|+++-..+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 45799999999988888877776 346677779999999999999999999 899999976 999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEe
Q 000575 1333 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1367 (1413)
Q Consensus 1333 I~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~ 1367 (1413)
|+||||-.-.....|+||..|-||.- +++.++.
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~ 538 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLD 538 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeec
Confidence 99999999999999999999999975 4444443
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.30 E-value=1.2e-09 Score=138.78 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=89.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
+.++|||..-...++.+.+.|+.. ++.+..++|.++. +++++++|..++..+||| +|..++.||++....+||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 457999999999999999999887 7999999999985 467788885447777777 88999999999999999999
Q ss_pred cCCC------------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000575 1336 DLWW------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1373 (1413)
Q Consensus 1336 Dp~W------------NP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEE 1373 (1413)
+... +.+...||.||++|. ++=.+++|+.+.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7222 444566777777775 5678899998877543
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.30 E-value=2.9e-10 Score=135.93 Aligned_cols=85 Identities=13% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC--CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSS--IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~g--I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
++.|+|||++....++.+...|+..+ +.+..++|.++..+|.++. ...||| +|.+++.||++... +||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLV-aTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDILL-GTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEEE-EecHHhcccCCCCc-eEE-
Confidence 46799999999999999999999865 5788999999999987653 455665 77999999999754 666
Q ss_pred EcCCCCcChHHHHHHhhh
Q 000575 1335 LDLWWNPTTEDQAIDRAH 1352 (1413)
Q Consensus 1335 lDp~WNP~~e~QAiGRvh 1352 (1413)
++ +-++....||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 456778888888863
No 75
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=1.2e-11 Score=114.45 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhh
Q 000575 1273 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1352 (1413)
Q Consensus 1273 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvh 1352 (1413)
.|...|+..++.+..++|.++.++|.++++.|+. +.. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998 444 45558899999999999999999999999999999999999
Q ss_pred ccC
Q 000575 1353 RIG 1355 (1413)
Q Consensus 1353 RIG 1355 (1413)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.25 E-value=7.8e-10 Score=148.17 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=76.6
Q ss_pred CeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000575 1259 EKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1331 (1413)
Q Consensus 1259 ~KvIIFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~S---tkaGg~GLNLq~-An~ 1331 (1413)
.++|||++.... ++.|...|+..|+++..++|+| .+.+++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcceeE
Confidence 478999998666 9999999999999999999999 234699998 899999986 789999999997 899
Q ss_pred EEEEcCCC------CcChHHHHHHhhhcc
Q 000575 1332 VLLLDLWW------NPTTEDQAIDRAHRI 1354 (1413)
Q Consensus 1332 VI~lDp~W------NP~~e~QAiGRvhRI 1354 (1413)
||||+.|= .......+++|+-++
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999986 445556777777643
No 77
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.24 E-value=4.8e-11 Score=120.24 Aligned_cols=137 Identities=26% Similarity=0.233 Sum_probs=95.6
Q ss_pred ccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 000575 670 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 749 (1413)
Q Consensus 670 GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~ 749 (1413)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998653210
Q ss_pred hhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccccCCCEEEEechhhhcccCCCCCC
Q 000575 750 EQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 826 (1413)
Q Consensus 750 ~~~~~~p~~~TLIVcP~SLL-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~--~~L~~yDVVITTY~~l~~e~~k~~~~ 826 (1413)
...+.+||+||...+ .||.+++.++... .+.+.++++....... ......+++++||+.+......
T Consensus 28 -----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 28 -----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred -----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 112468999999855 6667777776542 5777777776544322 2246789999999988643210
Q ss_pred CchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCCcccCChhhHHH
Q 000575 827 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 906 (1413)
Q Consensus 827 ~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN~~T~~s 906 (1413)
..+....|++||+||+|.+.+......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002234688999999999988764443
Q ss_pred ---HHHHhcccCcEEEEeccc
Q 000575 907 ---RACWGLRAKRRWCLSGTP 924 (1413)
Q Consensus 907 ---kal~~L~ak~RwlLTGTP 924 (1413)
.........+++++||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 333445778899999998
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.24 E-value=4.9e-10 Score=133.97 Aligned_cols=108 Identities=23% Similarity=0.241 Sum_probs=96.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
...||||....-++-|..+|...|+.+..|.|.|+..+|..+++..+. -.++||| ||+..+.|++-..+|-||++|++
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILV-sTDLtaRGIDa~~vNLVVNiD~p 350 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILV-STDLTARGIDADNVNLVVNIDAP 350 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEE-ecchhhccCCccccceEEecCCC
Confidence 566899999999999999999999999999999999999999999987 6688888 88999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1339 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
-+..+...||||++|+|-. ...|..+..+.
T Consensus 351 ~d~eTY~HRIGRAgRFG~~-G~aVT~~~~~~ 380 (980)
T KOG4284|consen 351 ADEETYFHRIGRAGRFGAH-GAAVTLLEDER 380 (980)
T ss_pred cchHHHHHHhhhccccccc-ceeEEEeccch
Confidence 9999999999999999955 45665444433
No 79
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.19 E-value=1.7e-09 Score=145.71 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---------------------------------CcEEecCCCCCHHHHHHHHHHH
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSS---------------------------------IQYRRLDGTMSVFARDKAVKDF 1304 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~g---------------------------------I~~~rldGsms~~qR~~aI~~F 1304 (1413)
+.++|||++.....+.+...|++.. +....++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 3567777777777777777775421 1145678999999999999999
Q ss_pred hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc
Q 000575 1305 NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1354 (1413)
Q Consensus 1305 n~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRI 1354 (1413)
++ +.++||| +|.+...|||+...+.||+++.+.+.....|++||+.|.
T Consensus 324 K~-G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KS-GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred Hh-CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98 8899888 669999999999999999999999999999999999995
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=3.4e-09 Score=131.91 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHhc--CCcEEecCCCCCHHHH--HHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC--CC-c---
Q 000575 1272 DLLEASLKDS--SIQYRRLDGTMSVFAR--DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW--WN-P--- 1341 (1413)
Q Consensus 1272 dlLe~~L~~~--gI~~~rldGsms~~qR--~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~--WN-P--- 1341 (1413)
+.+++.|++. +.++.++|+.++..++ ++++++|.+ +++.||| .|...+.|+++...+.|+++|.+ .+ |
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 4445555544 6788999999876655 899999998 7888888 66889999999999999876554 33 4
Q ss_pred ------ChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1342 ------TTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1342 ------~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
....|+.||+.|-+....|.+..+-..
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 357899999999887777766554443
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.17 E-value=4.5e-09 Score=133.94 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=99.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcC-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSS-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~g-I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..+|||++-..+.+.+...|++.+ ..+..=||+++.++|..+-++|.+ ++.++++ +|.....||+.-..+.||.|..
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV-~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVV-ATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEE-EccchhhccccCCceEEEEeCC
Confidence 478999999999999999999886 788888999999999999999999 7799999 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhh-ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000575 1338 WWNPTTEDQAIDRAH-RIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1384 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvh-RIGQtr~V~V~rLi~kdTIEErIl~lq~~K~~ 1384 (1413)
|=.-++..||+||+. |+|.+.. .++++.+ .++.+.-+..-+..
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred cHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHHH
Confidence 999999999999985 4665443 3345555 56655554444443
No 82
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=2.7e-09 Score=127.45 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=97.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
..+|++||.+-.+.++.|+..|...++++..++|.-+..+|.++++.|.. +...||| .|..++.|||.....|||+||
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlV-aT~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLV-ATNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEE-EehhhhcCCCCCCCceeEEee
Confidence 35799999999999999999999999999999999999999999999998 8888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
.+=+-..+..||||..|.|+.-..+..
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEE
Confidence 999999999999999999998765554
No 83
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=2.6e-09 Score=122.29 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=99.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
...|+|||+....++|-|.--|.-.||..-.++|.-.+.+|+.+++.|+. +.+++|| .|+.++.||++....||++||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEE-EechhhcCCCchhcceeeccC
Confidence 56899999999999999999999999999999999999999999999999 8999998 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
.+-|-.....|+||.+|-|.+-. -|..|.-.+
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 99999999999999999997764 444444444
No 84
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.12 E-value=1.5e-09 Score=127.98 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEE
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1361 (1413)
Q Consensus 1282 gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~ 1361 (1413)
+.+|.+++|+|.+++|..++..|...... ||| +|++++.||+|....-||-||||..++....||||.-|+|-+-.-.
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~-VLL-cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRA-VLL-CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccce-EEE-ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 45699999999999999999999985544 555 7799999999999999999999999999999999999999887633
Q ss_pred EEEEEeCCCHHHHHHHH
Q 000575 1362 VLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1362 V~rLi~kdTIEErIl~l 1378 (1413)
. |+.....| .+-.+
T Consensus 549 L--fL~P~Eae-y~~~l 562 (708)
T KOG0348|consen 549 L--FLLPSEAE-YVNYL 562 (708)
T ss_pred E--EecccHHH-HHHHH
Confidence 2 35555444 44333
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.12 E-value=4e-09 Score=141.67 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=68.7
Q ss_pred CeEEEEcccH---HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000575 1259 EKAIVFSQWT---KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1331 (1413)
Q Consensus 1259 ~KvIIFSq~t---~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~S---tkaGg~GLNLq~-An~ 1331 (1413)
.++|||++-. ..++.|...|+..|++...++|.++ ++++++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCccccE
Confidence 5689999988 8999999999999999999999987 378999998 899999986 689999999998 799
Q ss_pred EEEEcCC
Q 000575 1332 VLLLDLW 1338 (1413)
Q Consensus 1332 VI~lDp~ 1338 (1413)
||+||+|
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999987
No 86
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.12 E-value=7.3e-09 Score=134.64 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=91.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
.++|||..-...++.+...|+. .++.++.++|+++.++|.++++.|.. +..+|+| +|..+..||++...++||.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlV-ATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVL-ATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEE-ecchHhhcccccCceEEEEc
Confidence 5789999999999999999987 47899999999999999999999987 6777777 88999999999999999998
Q ss_pred cCC----CCcCh--------------HHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000575 1336 DLW----WNPTT--------------EDQAIDRAHRIGQTRPVSVLRLTVKNT 1370 (1413)
Q Consensus 1336 Dp~----WNP~~--------------e~QAiGRvhRIGQtr~V~V~rLi~kdT 1370 (1413)
+.+ |||.. ..||.||++|. ++=..|+|+.+..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 66654 56888888886 5667889987643
No 87
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.09 E-value=5.7e-09 Score=128.84 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=95.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
+.-.|||+......+.|.++|...|+....|+|+|+.++|+..-++|.+ +++.||+ .|.|.|-|+|=.....||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiV-AT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMV-ATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEE-EeccccCccCCCCceEEEEecC
Confidence 3456999999999999999999999999999999999999999999998 7788888 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEE
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V 1362 (1413)
|=+.....|=+||++|-|...+...
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999998876444
No 88
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.07 E-value=1.2e-08 Score=121.00 Aligned_cols=122 Identities=25% Similarity=0.251 Sum_probs=102.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
...|+|||-..-.-..++.+.+.+. |++...++|.|++..|..+..+|.. .-.|+|.+|+.++.||++.+.+.||-
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcccceEEE
Confidence 3478999999999999999888764 9999999999999999999999987 33456668899999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000575 1335 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1383 (1413)
Q Consensus 1335 lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~ 1383 (1413)
+|.|=+-..++.|+||.-|.+-.-+-.++ .--+-||.|+...++|.
T Consensus 390 ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 390 VDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAMLKKLQKKK 435 (758)
T ss_pred ecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHHHHHHHcC
Confidence 99999999999999999999877664442 23345577776666653
No 89
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.06 E-value=1.3e-08 Score=119.95 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=90.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
.|||||+.--.+..++...|+...+++..|+|++++..|.....+|.+. +-- +|+.|++++.|++....+-||-||||
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esg-IL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESG-ILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccc-eEEecchhhccCCCCCceEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999983 333 44577999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000575 1339 WNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
-+|..++.|+||..|-|-+-+
T Consensus 409 ~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 409 SDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCHHHHHHHhccccccCCCce
Confidence 999999999999999776543
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.06 E-value=6.7e-09 Score=135.48 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=95.5
Q ss_pred CCCeEEEEcccHHHHHHHH----HHHHhcC----CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLE----ASLKDSS----IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe----~~L~~~g----I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~ 1328 (1413)
.+.|.|+|+.+...+..+. ..+...+ .....+.|++...+|.++...|+. +++.+++ ++.|.-+|+.+-.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~-st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVI-ATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEe-cchhhhhceeehh
Confidence 5789999999999999987 4444445 568899999999999999999998 8888888 8899999999999
Q ss_pred cCEEEEEcCCC-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1329 ACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1329 An~VI~lDp~W-NP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
...||+.--|- .-....|+.||++|-||.-.+.+. .-.+-++..+...
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v--~~~~~~d~yy~~~ 431 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV--LRSDPLDSYYLRH 431 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE--eCCCccchhhhhC
Confidence 99999998776 557788999999999965543332 2256676665543
No 91
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.05 E-value=7.3e-09 Score=133.43 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=78.0
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 725 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 725 (1413)
.|+++|+.++.-.+.. . .-.|+|--+|.|||+.++..|......
T Consensus 31 el~~~qq~av~~~~~~-~-----~N~li~aPTgsGKTlIA~lai~~~l~~------------------------------ 74 (766)
T COG1204 31 ELFNPQQEAVEKGLLS-D-----ENVLISAPTGSGKTLIALLAILSTLLE------------------------------ 74 (766)
T ss_pred HhhHHHHHHhhccccC-C-----CcEEEEcCCCCchHHHHHHHHHHHHHh------------------------------
Confidence 6999999999755533 1 337999999999999997777542110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000575 726 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 804 (1413)
Q Consensus 726 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~ 804 (1413)
..++.+-|||. +|..+=.+|+.+|- .-.++|.+++|...... ..+.
T Consensus 75 ------------------------------~~~k~vYivPlkALa~Ek~~~~~~~~--~~GirV~~~TgD~~~~~-~~l~ 121 (766)
T COG1204 75 ------------------------------GGGKVVYIVPLKALAEEKYEEFSRLE--ELGIRVGISTGDYDLDD-ERLA 121 (766)
T ss_pred ------------------------------cCCcEEEEeChHHHHHHHHHHhhhHH--hcCCEEEEecCCcccch-hhhc
Confidence 02458999998 47788888887332 23699999999887554 7889
Q ss_pred CCCEEEEechhhh
Q 000575 805 KFDVVITTYSIVS 817 (1413)
Q Consensus 805 ~yDVVITTY~~l~ 817 (1413)
++|||||||+-+-
T Consensus 122 ~~~ViVtT~EK~D 134 (766)
T COG1204 122 RYDVIVTTPEKLD 134 (766)
T ss_pred cCCEEEEchHHhh
Confidence 9999999998874
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.04 E-value=7.4e-08 Score=125.55 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=79.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHH----HHHHHHHhcCCC---ccEEEeeccccccccCc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFAR----DKAVKDFNTLPE---VSVMIMSLKAASLGLNM 1326 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR----~~aI~~Fn~d~~---i~VLL~StkaGg~GLNL 1326 (1413)
.+.++|||++-...+..+.+.|++.+ +.+..++|.++..+| .++++.|..++. .+| |++|.+...||++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~I-LVaTQViE~GLDI 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRI-LVATQVVEQSLDL 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeE-EEECcchhheeec
Confidence 46799999999999999999998764 678999999999999 567889944333 345 5588999999999
Q ss_pred cccCEEEEEcCCCCcChHHHHHHhhhccCCC
Q 000575 1327 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1327 q~An~VI~lDp~WNP~~e~QAiGRvhRIGQt 1357 (1413)
.++.||....+ .....||+||+||-|.+
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 56877775444 46889999999999875
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=1.1e-08 Score=130.91 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=96.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq--------- 1327 (1413)
.+..||||+......+.|...|.+.||++..++|.+...+|+.+.++|+. + .|+| +|..+|.|+++.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~-G--~VtI-ATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP-G--AVTI-ATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC-C--cEEE-eccCccCCcceecCCchhhhh
Confidence 68899999999999999999999999999999999999999999999998 3 3666 779999998865
Q ss_pred -----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1328 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1328 -----------------------------~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
..=|||.-+.+=|-..+.|..||++|.|..-....| + |+|+.++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~-l----SleD~l~~~ 593 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY-L----SLEDNLMRI 593 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE-E----EcCcHHHHH
Confidence 235899999999999999999999999987764433 1 556555543
No 94
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.03 E-value=3e-08 Score=116.43 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=99.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
..|+|||.--....+-|...|+..|+.+..++|.|.+.+|.+.+..|+. ....||+ .|+.+..||+...-.+||+||.
T Consensus 468 ~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~Vlv-atDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 468 EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLV-ATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEE-EeeHhhcCCCccccceeecccc
Confidence 3689999999999999999999999999999999999999999999998 6677888 4599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIE 1372 (1413)
.-.-....|+|||..|-|-+ =..|.|+++...+
T Consensus 546 ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88888889999999999987 3567788876655
No 95
>PRK14701 reverse gyrase; Provisional
Probab=99.01 E-value=4.2e-08 Score=134.66 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec---cccccccCccc-cC
Q 000575 1258 GEKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL---KAASLGLNMVA-AC 1330 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~St---kaGg~GLNLq~-An 1330 (1413)
+...|||++.... ++.|...|...|+++..++|. |.+++++|.+ ++++|||.+. ..++.||++.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccC
Confidence 3568999986653 589999999999999999995 8999999999 8999999774 57899999997 89
Q ss_pred EEEEEcCCC---CcChHHH-------------HHHhhhccCCC
Q 000575 1331 HVLLLDLWW---NPTTEDQ-------------AIDRAHRIGQT 1357 (1413)
Q Consensus 1331 ~VI~lDp~W---NP~~e~Q-------------AiGRvhRIGQt 1357 (1413)
+|||||.|= +-..+.| .++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999886 5544444 45899988864
No 96
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.01 E-value=3.6e-08 Score=128.50 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=90.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
...+|||..-...++.+...|+. .++.+..++|.++.++|.++++.|.. +..+|+| +|..+..||++...++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEE-ecchHHhcccccCceEEEE
Confidence 35789999999999999999987 58889999999999999999999976 6677777 8899999999999999999
Q ss_pred EcCC----CCcC--------------hHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000575 1335 LDLW----WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1371 (1413)
Q Consensus 1335 lDp~----WNP~--------------~e~QAiGRvhRIGQtr~V~V~rLi~kdTI 1371 (1413)
++.. |+|. ...||.||++|. ++=++|||+.+...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 4443 356777777775 57789999876543
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=1.1e-08 Score=130.40 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=85.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq---~An--- 1330 (1413)
.+..+|||+......+.|...|.+.|+++..++|.+...++.-+..+|+. ..|+| +|..+|.|++.. ...
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g~VtI-ATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---GAVTI-ATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---ceEEE-EeccccCCCCCCCCcchhhhC
Confidence 57899999999999999999999999999999999875555555555544 23666 779999999984 566
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcE
Q 000575 1331 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1360 (1413)
Q Consensus 1331 --~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V 1360 (1413)
|||.++.+-+...+.|++||+.|.|..-..
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999999999999999999999988764
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.92 E-value=2.5e-07 Score=120.03 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcC
Q 000575 1266 QWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPT 1342 (1413)
Q Consensus 1266 q~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~-WNP~ 1342 (1413)
+....+.-+...|+.. ..++...||.|+..+-++++.+|.+ ++..||| +|...-.||+...||++|+-+.. +--+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv-~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDVLV-CTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCEEE-EeeeeecCcCCCCCceEEEeccccccHH
Confidence 3344444444444442 3456788999999999999999998 8999999 66888999999999999996644 5667
Q ss_pred hHHHHHHhhhccCCCCcEEEEEEEeCC-----CHHHHHHHHHH
Q 000575 1343 TEDQAIDRAHRIGQTRPVSVLRLTVKN-----TVEDRILALQQ 1380 (1413)
Q Consensus 1343 ~e~QAiGRvhRIGQtr~V~V~rLi~kd-----TIEErIl~lq~ 1380 (1413)
..-|--|||+|-. +.-+-|-++..+ ..+.|+..++.
T Consensus 889 QLyQLRGRVGRS~--~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 889 QLYQLRGRVGRSN--KQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred HHHHhccccCCcc--ceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 8889999999944 345777776643 24455555444
No 99
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.91 E-value=6.4e-08 Score=115.33 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=97.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL---- 1334 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~---- 1334 (1413)
...|||+....-...|..+|...|++..-|+++++-.+|..+-.+|.. .++.+++ +|.|.|.|+++.+ +.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFPA-SQVIFEsLa 517 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVV-TTAALAAGVDFPA-SQVIFESLA 517 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCch-HHHHHHHHH
Confidence 467999999999999999999999999999999999999999999998 7888887 8899999999985 45554
Q ss_pred Ec-CCCCcChHHHHHHhhhccCCCCcEEEEEEEe---------CCCHHHHHHHHH
Q 000575 1335 LD-LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV---------KNTVEDRILALQ 1379 (1413)
Q Consensus 1335 lD-p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~---------kdTIEErIl~lq 1379 (1413)
|. -|.+|.-..|..||++|.|-...=.||-++- .+|=||.-+.+.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL 572 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLL 572 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHh
Confidence 33 4669999999999999999766556666663 356566555544
No 100
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=6.9e-08 Score=123.60 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=90.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------- 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~-------- 1328 (1413)
.+..+||||......+.|...|...|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.-
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~VtI-ATNmAGRGtDI~LgGn~~~~~ 504 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAVTI-ATNMAGRGTDIKLGGNPEMLA 504 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceEEE-ecccccCCcCccCCCchhhhh
Confidence 57899999999999999999999999999999996 6799999999998 6667777 6699999988652
Q ss_pred ------------------------------cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEE
Q 000575 1329 ------------------------------ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1329 ------------------------------An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
.=|||.-+.+=|-..+.|..||+.|.|..-....+
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 505 AALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 46899999999999999999999999998764443
No 101
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.89 E-value=3e-08 Score=116.75 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
.++|||.+-...+.-+...|--.|++...++|+.++.||...++.|.+ .++.||| +|+.++.||+....-+||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLi-aTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLI-ATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEE-EechhhccCCccceeEEEeccCc
Confidence 678999999999999999999999999999999999999999999998 8899999 66999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCC
Q 000575 1339 WNPTTEDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQt 1357 (1413)
-.-..+..|+||.-|-|..
T Consensus 505 ~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred hhHHHHHHHhhhhhhcccC
Confidence 8888999999999998864
No 102
>COG4889 Predicted helicase [General function prediction only]
Probab=98.85 E-value=4.4e-08 Score=120.47 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhc-C-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCC
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNT-L-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1358 (1413)
Q Consensus 1282 gI~~~rldGsms~~qR~~aI~~Fn~-d-~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr 1358 (1413)
.+.+..+||.|+..+|.+.+..=+. . .+++||= ..++.++|++..+-+-|||++|--.-....||+|||-|----|
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlS-NaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILS-NARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeec-cchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 4556789999999999666554433 2 3466555 8899999999999999999999977778889999999965433
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=1.9e-07 Score=119.44 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=95.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq--------- 1327 (1413)
.|..||||+......+.|...|...|+++..+++.+...+|..+.++|+. +. |+| +|..+|.|+++.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtI-ATnmAGRGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTI-ATNMAGRGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEE-ecCCcCCCcceecCCchHHhh
Confidence 68999999999999999999999999999999999999999999999998 43 566 779999998865
Q ss_pred ----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000575 1328 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1377 (1413)
Q Consensus 1328 ----------------------------~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~ 1377 (1413)
..=|||.-+.+=|-..+.|..||+.|.|..-.-..| + |+|+.++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~-l----SlED~L~r 596 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY-L----SMEDSLMR 596 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE-E----EeCcHHHH
Confidence 235899999999999999999999999987653332 1 45555554
No 104
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=6.3e-07 Score=105.38 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=90.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
..+|+|||...-...+|....|... .+.++-++|.|+.++|.++++.|.. ..-.||+ +|++++.||+....+.||.
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~-~~~~vl~-~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK-LSNGVLF-CTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh-ccCceEE-eehhhhccCCCCCceEEEe
Confidence 4589999999888888888888764 7889999999999999999999998 3334555 7899999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEE
Q 000575 1335 LDLWWNPTTEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1335 lDp~WNP~~e~QAiGRvhRIGQtr~V~V 1362 (1413)
+|||-+|.....|.||..|.|..-.-.|
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEE
Confidence 9999999999999999999997765333
No 105
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.81 E-value=3.1e-08 Score=108.60 Aligned_cols=109 Identities=22% Similarity=0.199 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 725 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 725 (1413)
.++++|++++.-+.+ ++..+++-..|.|||++.+..+......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~------------------------------ 63 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDP------------------------------ 63 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 479999999998885 2568999999999999854443321100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Ccccc
Q 000575 726 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 803 (1413)
Q Consensus 726 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~~~~L 803 (1413)
........+|||||.. ++.||...+.++.. ...+++..++|..... ....+
T Consensus 64 --------------------------~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 64 --------------------------SPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred --------------------------hcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 0000113489999985 78999999987754 3468888888865432 22223
Q ss_pred -cCCCEEEEechhhhc
Q 000575 804 -AKFDVVITTYSIVSM 818 (1413)
Q Consensus 804 -~~yDVVITTY~~l~~ 818 (1413)
...+|+|+|.+.+..
T Consensus 117 ~~~~~iiv~T~~~l~~ 132 (203)
T cd00268 117 KRGPHIVVATPGRLLD 132 (203)
T ss_pred cCCCCEEEEChHHHHH
Confidence 378999999887753
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=7.1e-06 Score=105.81 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=94.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An------ 1330 (1413)
.+..||||+......+.|.+.|...||++..|++ ...+|++.|.+|.. ....|+| +|..+|.|+++.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtI-ATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTI-ATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEE-eccCcCCCCCcCCccchhhhC
Confidence 5789999999999999999999999999999997 57899999999998 5567777 679999999988332
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000575 1331 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1379 (1413)
Q Consensus 1331 --~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq 1379 (1413)
+||..+.+-+...+.|++||+.|.|..-.... |+ |.|+.++.+-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fv---SleD~Lmr~f 718 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YV---SLEDELMRLF 718 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--Ee---chhHHHHHhh
Confidence 45889999999999999999999998765322 12 5666666543
No 107
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.64 E-value=1.8e-06 Score=109.54 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh----------HHHHHHhhhccCCC
Q 000575 1288 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT----------EDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1288 ldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~----------e~QAiGRvhRIGQt 1357 (1413)
=+.+|...+|+..-+-|.. +.++||. +|...+-|+||.+-..+|-=-+.|++.. ..|-+|||+|..=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~-G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKE-GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhc-CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 3678899999999999998 8899988 6699999999998777776667777765 67999999998644
Q ss_pred CcEEEEEEEeCCCHH
Q 000575 1358 RPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1358 r~V~V~rLi~kdTIE 1372 (1413)
..=..+-+...++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 443444344444443
No 108
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.63 E-value=3.6e-06 Score=112.50 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=85.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCc---EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQ---YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~---~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
..++|||..-...++.+...|+..+++ ++.++|.++.++|.++++. .+..+|+| +|..+..||++....+||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIV-ATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVL-ATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEE-eccHHhhccccCcceEEEE
Confidence 467999999999999999999988765 5678999999999988664 35566666 8899999999999999999
Q ss_pred Ec---------------CCCCc---ChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000575 1335 LD---------------LWWNP---TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1335 lD---------------p~WNP---~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIE 1372 (1413)
++ ++-.| +...||.||++|. ++=.+|+|+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 74 33334 4566777777776 566788998765443
No 109
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.61 E-value=1.2e-07 Score=108.34 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
..-+||||++-..-.|-|.++|--.|+..+.|+|+-.+++|..+|+.|+. +...||+ .|++++-||+++...|||+||
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLV-ATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLV-ATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEE-EecchhccCCCccchhhccCC
Confidence 34689999999999999999999999999999999999999999999998 7778888 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH----HHHHHHHH
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA----LQQKKREM 1385 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~----lq~~K~~l 1385 (1413)
.+-.-.....||||.+|-|.|- .-..|+-+++-|.-+++ +++.|+++
T Consensus 498 MP~eIENYVHRIGRTGRsg~~G--iATTfINK~~~esvLlDLK~LL~EakQ~v 548 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTG--IATTFINKNQEESVLLDLKHLLQEAKQEV 548 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcc--eeeeeecccchHHHHHHHHHHHHHhhccC
Confidence 9887778889999999988775 34456778776666655 45666654
No 110
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.60 E-value=2e-07 Score=106.74 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=95.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
...|||++-..++..|...|...|.++..++|.+...+|.+++++|+. +..+||| +|.+.+.|++.+..+.||+||++
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLi-tTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLI-TTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEE-EechhhcccccceEEEEEecCCc
Confidence 457999999999999999999999999999999999999999999998 7888888 77999999999999999999988
Q ss_pred C------CcChHHHHHHhhhccCCCCcEEEEEEEe-CCCHH
Q 000575 1339 W------NPTTEDQAIDRAHRIGQTRPVSVLRLTV-KNTVE 1372 (1413)
Q Consensus 1339 W------NP~~e~QAiGRvhRIGQtr~V~V~rLi~-kdTIE 1372 (1413)
- .+.+...||||.+|.|.+- +-+- |+- +++.+
T Consensus 409 ~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n-~v~~~~s~~ 447 (477)
T KOG0332|consen 409 VKYTGEPDYETYLHRIGRTGRFGKKG-LAIN-LVDDKDSMN 447 (477)
T ss_pred cccCCCCCHHHHHHHhcccccccccc-eEEE-eecccCcHH
Confidence 4 3557889999999999664 4443 554 34443
No 111
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.59 E-value=4.6e-06 Score=111.80 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
..++|||..-...++.+...|+..+ +.+..++|.++.++|.++++.+ +..+|+| +|..+..||++....+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIVL-ATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIVL-ATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEEE-eccHHHhccccCCeeEEEe
Confidence 3579999999999999999998764 4578899999999999885443 3345555 8899999999999999998
Q ss_pred EcCC----CC--------------cChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000575 1335 LDLW----WN--------------PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1335 lDp~----WN--------------P~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIE 1372 (1413)
++.. || .+...||.||++|.| +=.+|+|+++...+
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 7732 22 246679999998887 66788999876543
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.59 E-value=1.9e-07 Score=98.89 Aligned_cols=159 Identities=22% Similarity=0.283 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000575 649 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 728 (1413)
Q Consensus 649 phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 728 (1413)
|+|.+++.-+.+. +-.|+.-.+|.|||..++..++.....
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7999999988832 236999999999999887555431100
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-C-cccc-c
Q 000575 729 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-D-PCEL-A 804 (1413)
Q Consensus 729 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~-~~~L-~ 804 (1413)
. ..+.+||+||.. ++.|-.+++.+++.. ..+++..++|..... . ...+ .
T Consensus 42 -------------------------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 42 -------------------------G-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp -------------------------T-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred -------------------------C-CCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 0 112589999975 889999999888764 457888888766422 1 1223 4
Q ss_pred CCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCccc
Q 000575 805 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 884 (1413)
Q Consensus 805 ~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~~ 884 (1413)
..+|+|+|++.|...+.. . ...+.
T Consensus 95 ~~~ilv~T~~~l~~~~~~-----------------~--------------------------------------~~~~~- 118 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN-----------------G--------------------------------------KINIS- 118 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT-----------------T--------------------------------------SSTGT-
T ss_pred cccccccCcchhhccccc-----------------c--------------------------------------ccccc-
Confidence 699999999998643210 0 00122
Q ss_pred cCccEEEEcCCcccCCh--hhHHHHHHHhc---ccCcEEEEecccCCCchHHH
Q 000575 885 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDDL 932 (1413)
Q Consensus 885 i~W~rVIlDEAH~IKN~--~T~~skal~~L---~ak~RwlLTGTPiqN~l~DL 932 (1413)
...+||+||+|.+... .......+..+ ...+.+++||||- .++++|
T Consensus 119 -~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 119 -RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp -TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred -cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 2578999999998662 22233333333 2356899999997 655543
No 113
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.56 E-value=1.6e-06 Score=110.75 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=93.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
...|+|||++--.-++.|.+.|.+.|+....++|..+..+|...+++|++ +.+.+|| .|...+.||+...-..||+||
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~LLv-aTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVNLLV-ATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCceEEE-ehhhhhcccccccceEEEEcc
Confidence 35799999999999999999999999999999999999999999999998 5555555 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
.+=.......|.||..|-|.+- .-|.|+..
T Consensus 690 ~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 690 FPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred cchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9877777888888888888766 55556655
No 114
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.54 E-value=2e-06 Score=98.59 Aligned_cols=245 Identities=20% Similarity=0.212 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHhhccCC---CCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000575 647 LLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~~~~---~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 723 (1413)
|=.-|+++|.+..++....+ .-.|-+|+|-+|.||-.++-++|......
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------------------------- 89 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------------------------- 89 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc----------------------------
Confidence 56789999998887665322 23678999999999999998888753210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 803 (1413)
Q Consensus 724 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L 803 (1413)
.+.+++-|-+...|..-=++.|... . ...+.+.....-++.. . .-
T Consensus 90 -------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DI-G-~~~i~v~~l~~~~~~~-~-~~ 134 (303)
T PF13872_consen 90 -------------------------------GRKRAVWVSVSNDLKYDAERDLRDI-G-ADNIPVHPLNKFKYGD-I-IR 134 (303)
T ss_pred -------------------------------CCCceEEEECChhhhhHHHHHHHHh-C-CCcccceechhhccCc-C-CC
Confidence 1223455555666765555555432 2 1123333322222111 1 11
Q ss_pred cCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCcc
Q 000575 804 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 883 (1413)
Q Consensus 804 ~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~ 883 (1413)
.+.+||.+||++|..+..+. . + .+.+++ .+.++ +.
T Consensus 135 ~~~GvlF~TYs~L~~~~~~~---------------------------~--~-----------~~sRl~-ql~~W----~g 169 (303)
T PF13872_consen 135 LKEGVLFSTYSTLISESQSG---------------------------G--K-----------YRSRLD-QLVDW----CG 169 (303)
T ss_pred CCCCccchhHHHHHhHHhcc---------------------------C--C-----------ccchHH-HHHHH----Hh
Confidence 25679999999997642110 0 0 000000 00000 00
Q ss_pred ccCc-cEEEEcCCcccCChhh------HHHHHHHhc----ccCcEEEEecccCCCchHHHHHhhhhcc----cCCccchH
Q 000575 884 KVGW-FRVVLDEAQSIKNHRT------QVARACWGL----RAKRRWCLSGTPIQNAIDDLYSYFRFLR----YDPFAVYK 948 (1413)
Q Consensus 884 ~i~W-~rVIlDEAH~IKN~~T------~~skal~~L----~ak~RwlLTGTPiqN~l~DLyslL~FL~----p~~f~~~~ 948 (1413)
-.| .+||+||||..||..+ ++..++..| ..-+.+-.|||... .+..|.-+-+ |. ..+|.++.
T Consensus 170 -~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~R-LGLWG~gtpf~~~~ 246 (303)
T PF13872_consen 170 -EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSR-LGLWGPGTPFPDFD 246 (303)
T ss_pred -cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeee-ccccCCCCCCCCHH
Confidence 111 3799999999999644 566676655 33467889999974 3444432222 22 23577888
Q ss_pred HHHhhhccCCCCCchhhHHHHHHHH--hhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 000575 949 SFCSMIKVPISKNPVKGYKKLQAVL--KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 1016 (1413)
Q Consensus 949 ~F~~~~~~pi~~~~~~~~~rL~~lL--~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~ 1016 (1413)
.|...+. ++.....+-+-.-| ...+++|... +-.....++.+++++++.++|+.
T Consensus 247 ~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~LS----------f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 247 DFLEAME----KGGVGAMEMVAMDLKARGMYIARQLS----------FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHH----hcCchHHHHHHHHHHhcchheeeecc----------cCCceEEEEEecCCHHHHHHhcC
Confidence 8877654 23333333333333 4467777753 45567889999999999999974
No 115
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.48 E-value=1.5e-05 Score=104.05 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=98.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhc---CCCccEEEeeccccccccCccccCEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMSLKAASLGLNMVAACHVL 1333 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~---d~~i~VLL~StkaGg~GLNLq~An~VI 1333 (1413)
.+.|++|-++-...+..+...|+..+..++.|++.+...+|.+.++...+ ..+..|+| +|++.-.|+++. .+.+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV-aTQVIEagvDid-fd~m- 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVV-ATQVIEAGVDID-FDVL- 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEE-EeeEEEEEeccc-cCee-
Confidence 57899999999999999999999988889999999999999999987663 23444555 889999999998 4444
Q ss_pred EEcCCCCcChHHHHHHhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000575 1334 LLDLWWNPTTEDQAIDRAHRIG--QTRPVSVLRLTVKNTVEDRILALQQKKREMV 1386 (1413)
Q Consensus 1334 ~lDp~WNP~~e~QAiGRvhRIG--Qtr~V~V~rLi~kdTIEErIl~lq~~K~~l~ 1386 (1413)
+-|+. -.....||.||++|-| ....++|+...-......+.++....+....
T Consensus 516 ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 516 ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 44432 2357889999999999 4555888877777777777766666655544
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.47 E-value=1.1e-06 Score=112.57 Aligned_cols=117 Identities=24% Similarity=0.295 Sum_probs=98.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+.....++.|...|...|+++..++|.++..+|.+++++|.. +.+.||| ++...+.|+++..++.||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV-~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEE-EcChhcCCeeeCCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 7888887 669999999999999999999
Q ss_pred -----CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC--HHHHHHHH
Q 000575 1337 -----LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT--VEDRILAL 1378 (1413)
Q Consensus 1337 -----p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdT--IEErIl~l 1378 (1413)
.+-+.....|++||+.|.. .- .|+.|+...| +...|.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 3457778999999999963 22 3555555544 44444443
No 117
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.42 E-value=6.4e-05 Score=92.76 Aligned_cols=86 Identities=27% Similarity=0.340 Sum_probs=66.3
Q ss_pred HHHhcCCCccEEEeeccccccccCccccCEE--------EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000575 1302 KDFNTLPEVSVMIMSLKAASLGLNMVAACHV--------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1373 (1413)
Q Consensus 1302 ~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V--------I~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEE 1373 (1413)
++|-. ++..|-|+| .|++.|+.||.-.+| |-+++||...+-+|-+||.||-.|..--..+.||.+=-=|.
T Consensus 851 qrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 851 QRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred hhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 45665 777888888 999999999965443 55999999999999999999999988766666676655666
Q ss_pred HHHHHHHHHHHHHHHH
Q 000575 1374 RILALQQKKREMVASA 1389 (1413)
Q Consensus 1374 rIl~lq~~K~~l~~~~ 1389 (1413)
|...+..++.+-..++
T Consensus 929 RFAS~VAKRLESLGAL 944 (1300)
T KOG1513|consen 929 RFASIVAKRLESLGAL 944 (1300)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7766666666655433
No 118
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.38 E-value=1.1e-05 Score=93.99 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=73.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH------------HHHhc--CCCccEEEeecccccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAV------------KDFNT--LPEVSVMIMSLKAASL 1322 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI------------~~Fn~--d~~i~VLL~StkaGg~ 1322 (1413)
.+.++||.++-..++|+||.+|...++.|.|++|.+-.++....- ..... ...+.|.|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 568999999999999999999999999999999987655444332 11111 1346677766554433
Q ss_pred ----ccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 000575 1323 ----GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1381 (1413)
Q Consensus 1323 ----GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~ 1381 (1413)
.++-...+.||-+|+.+++....-..-|.+.-.+ +.+-|+||++.+|+|-.++.....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 2334466889999999999876644444443333 789999999999999988876663
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=4.9e-05 Score=95.90 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCC-ccEEEeeccccccccCcc--------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMV-------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~-i~VLL~StkaGg~GLNLq-------- 1327 (1413)
.+..|||.+.....-+.|...|.+.||++..++.... ++-..+|.+= +. -.|.| +|.-+|.|-++.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A---G~~gaVTI-ATNMAGRGTDIkLg~~~~~~ 500 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA---GKYGAVTV-STQMAGRGTDIRLGGSDEAD 500 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc---CCCCcEEE-EecCCCCccCeecCCCcccc
Confidence 6889999999999999999999999999999998744 3333444332 22 23444 778888997655
Q ss_pred -------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000575 1328 -------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1379 (1413)
Q Consensus 1328 -------~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq 1379 (1413)
..=|||.-+.+=|-..+.|..||+.|.|+.-....+- |+|+.++.+-
T Consensus 501 ~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 501 RDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred hHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 3458999999999999999999999999876643331 5555555443
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.36 E-value=4.3e-06 Score=107.61 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=93.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+.++|||+.....++.|...|...|+++..++|.++..+|..+++.|.. +.+.|+| ++...+.|+++..++.||++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV-~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEE-EeCHHhCCccccCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 7787776 669999999999999999999
Q ss_pred C-----CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000575 1337 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1368 (1413)
Q Consensus 1337 p-----~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~k 1368 (1413)
. +-++....|++||+.| +. .=.++.|+..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR-~~--~G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAAR-NV--NGKVILYADK 556 (652)
T ss_pred CcccccCCCHHHHHHHhccccC-CC--CCEEEEEecC
Confidence 6 3578889999999999 33 2235555553
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.30 E-value=0.0011 Score=80.10 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=102.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.+++++|-+=-..|++-|..+|.+.||++..+|.....-+|..+|++.+. +.+.||| .....-+||+|..++-|.++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLV-GINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEE-eehhhhccCCCcceeEEEEee
Confidence 57999999999999999999999999999999999999999999999998 8899998 678999999999999999999
Q ss_pred CC-----CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000575 1337 LW-----WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1382 (1413)
Q Consensus 1337 p~-----WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K 1382 (1413)
.. -+-...+|-|||+-|=-.- .|..|-=.+.++++..|-+..+++
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHHH
Confidence 65 4777899999999993322 244443344556676666655443
No 122
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.30 E-value=4.7e-07 Score=101.62 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=93.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
...||||+.+...++|+..+.+.|+.+..++..|..+.|..+..+|.+ +.++.|++| +..-.|++.|+.|.||++|.+
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct-DL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT-DLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh-hhhhcccccceeeEEEecCCC
Confidence 468999999999999999999999999999999999999999999999 899999965 999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCC
Q 000575 1339 WNPTTEDQAIDRAHRIGQTR 1358 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr 1358 (1413)
-|+.....||||.+|.|---
T Consensus 401 k~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred CCHHHHHHHccCCccCCCcc
Confidence 99999999999999999643
No 123
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.24 E-value=1.7e-06 Score=98.77 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCccEEEeeccccccccCcccc-------CEE-EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000575 1299 KAVKDFNTLPEVSVMIMSLKAASLGLNMVAA-------CHV-LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1370 (1413)
Q Consensus 1299 ~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~A-------n~V-I~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdT 1370 (1413)
...++|++ ++..|+|+| +|||.|+.||+- .|| |.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56778998 788999998 999999999952 344 67999999999999999999999998866555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 000575 1371 VEDRILALQQKKREMVASAFGEDE 1394 (1413)
Q Consensus 1371 IEErIl~lq~~K~~l~~~~lg~d~ 1394 (1413)
.|.|......+|.+-..++...+.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999999999998776654443
No 124
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.23 E-value=0.0014 Score=75.54 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=76.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
.+..++||..-..+++-+...|+.. + .+...++.. ...|.+.|++|++ +.+++|| +|.....|+.+...+..++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~-G~~~lLi-TTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRD-GKITLLI-TTTILERGVTFPNVDVFVL 379 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHc-CceEEEE-EeehhhcccccccceEEEe
Confidence 5688999999999999999999543 2 222344444 3578999999998 8888777 7799999999999998887
Q ss_pred EcC--CCCcChHHHHHHhhhccCC
Q 000575 1335 LDL--WWNPTTEDQAIDRAHRIGQ 1356 (1413)
Q Consensus 1335 lDp--~WNP~~e~QAiGRvhRIGQ 1356 (1413)
=.- -+..+...|--||++|--.
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCc
Confidence 543 4889999999999999543
No 125
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.21 E-value=4.7e-06 Score=95.30 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=94.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
...-++||.|-+.+..+|...|+..+++.+.+++-|++++|..++.+|+. ..++||| .|++++.||+.....-||++|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~ili-aTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILI-ATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEE-EechhhcCCCCCceeEEEecC
Confidence 45789999999999999999999999999999999999999999999998 7788888 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
.|-.|.....|+||.-|-|..-.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999887654
No 126
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.20 E-value=0.00016 Score=94.29 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=63.9
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhc----ccCcEEEEecccCCC--chHHHHHhhhhcccCCccchHHHHhhhccCCCC
Q 000575 887 WFRVVLDEAQSIKNHRTQVARACWGL----RAKRRWCLSGTPIQN--AIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 960 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~~T~~skal~~L----~ak~RwlLTGTPiqN--~l~DLyslL~FL~p~~f~~~~~F~~~~~~pi~~ 960 (1413)
...||+||||++....+-.+ .+... +..+..++|+.|-.. ...-+-..++-|......-|.+|...+
T Consensus 32 itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~L~i~~v~l~prf~~~V------ 104 (814)
T TIGR00596 32 ITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMRNLFLRHVYLWPRFHVEV------ 104 (814)
T ss_pred ccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHHHHHhCcCeEEEeCCCchHH------
Confidence 45799999999976433322 22222 345678999999653 334444444444443333333332211
Q ss_pred CchhhHHHHHHHHhhhheeeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000575 961 NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1032 (1413)
Q Consensus 961 ~~~~~~~rL~~lL~~~mLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEre~Y~~L~~~~r~~~~~~~~~g 1032 (1413)
++.+ .--+..+..+.++|+++-+++...+..-....+.++...+
T Consensus 105 -------------~~~l---------------~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n 148 (814)
T TIGR00596 105 -------------ASSL---------------EKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKN 148 (814)
T ss_pred -------------HHHh---------------ccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 1011346677899999998888888777666666665544
No 127
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7.1e-06 Score=95.18 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=98.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000575 1259 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1338 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~ 1338 (1413)
...+||++-.+-++.|...|..++++...++|.|...+|..+++.|+. +..+||| ++...+.|++++..+-||+||+|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlI-ttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEe-eccccccccchhhcceeeeeccc
Confidence 578999999999999999999999999999999999999999999999 8889998 67999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000575 1339 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1370 (1413)
Q Consensus 1339 WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdT 1370 (1413)
=|......|+||..|.|.+- .+..++++.+
T Consensus 342 ~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred cchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 99999999999999999664 4455665544
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=0.00039 Score=90.10 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-HHHHHHhcCCC-ccEEEeeccccccccCcc-------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPE-VSVMIMSLKAASLGLNMV------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-~aI~~Fn~d~~-i~VLL~StkaGg~GLNLq------- 1327 (1413)
.+..|||-+.....-+.|...|.+.||++..++.... +++ .+|..= +. -.|.| +|.-+|.|-+..
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~A---G~~g~VTI-ATNmAGRGTDIkl~~~v~~ 640 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAGA---GKLGAVTV-ATNMAGRGTDIKLDEEAVA 640 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHhc---CCCCcEEE-eeccccCCcccccCchHHh
Confidence 6788999999999999999999999999999988733 333 333322 33 33445 778888997654
Q ss_pred -ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1328 -AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1328 -~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
..=|||.-+.+-|...+.|..||+.|.|..-.-..+ + |+|+.++.+
T Consensus 641 ~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~--l---SlEDdL~~~ 687 (970)
T PRK12899 641 VGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF--L---SFEDRLMRL 687 (970)
T ss_pred cCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE--E---EcchHHHHH
Confidence 346899999999999999999999999987653332 1 556665543
No 129
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.00 E-value=1.9e-05 Score=95.93 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=91.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1259 EKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1259 ~KvIIFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
-.+|||.|...-...|...| .-.+|.+-.++|..+..+|...+++|+. +.+.||+ .|...+.|+++..++.||+||.
T Consensus 388 PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLi-cTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 388 PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLI-CTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEE-ehhhhhccccccCcceEEecCC
Confidence 35799999999999999999 6779999999999999999999999999 9999999 5699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCc
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
+=.-.....+|||.+|-|+.-.
T Consensus 466 p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 466 PQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred CchhHHHHHHhhccCCCCCCcc
Confidence 9888899999999999998764
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.96 E-value=0.00038 Score=90.01 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=79.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCC-ccEEEeeccccccccCcc--------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMV-------- 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~-i~VLL~StkaGg~GLNLq-------- 1327 (1413)
.|..|||-+.....-+.|.+.|...||++-.++.... ++++.|-+ +. +. -.|.| +|.-+|.|-+..
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~A-G~~GaVTI-ATNMAGRGTDIkLg~n~~~~ 522 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QA-GRPGALTI-ATNMAGRGTDILLGGNWEVE 522 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cC-CCCCcEEE-eccCCCCCCCEecCCchHHH
Confidence 6899999999999999999999999999988887743 34433333 22 32 34555 668888887664
Q ss_pred -----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEE
Q 000575 1328 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1328 -----------------------------~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V 1362 (1413)
..=|||.-+.+=|-..+.|..||+.|.|..-....
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 523 VAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred HHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 34589999999999999999999999998776443
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=0.00098 Score=85.62 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=85.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc-------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA------- 1329 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~A------- 1329 (1413)
.+..|||.+.....-+.|...|...||++..++.... +|++.|-+ +. +..--+.++|..+|.|-+..-.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~A-G~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KA-GQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hC-CCCCeEEEecccccCCcCccCchhHHHcC
Confidence 6789999999999999999999999999999998733 44444433 22 4333344477888999876643
Q ss_pred -CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000575 1330 -CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1378 (1413)
Q Consensus 1330 -n~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~l 1378 (1413)
=|||..+.+=+-..+.|..||++|.|..-....| + |+|+.++.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r~ 545 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFRR 545 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHHH
Confidence 3999999999999999999999999987764433 2 455555543
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0014 Score=84.34 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=71.0
Q ss_pred HHHHHHHHhc--CCcEEecCCCCCHHH--HHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCcC--
Q 000575 1272 DLLEASLKDS--SIQYRRLDGTMSVFA--RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNPT-- 1342 (1413)
Q Consensus 1272 dlLe~~L~~~--gI~~~rldGsms~~q--R~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~---WNP~-- 1342 (1413)
+.|++.|+.. +.+++++|+.++... -+.+++.|.+ ++..||| -|.-..-|+|+....-|.++|.+ .+|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN-GEADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC-CCCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 3444455443 678888888876533 4678999998 8888888 56889999999999888887654 2332
Q ss_pred -------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1343 -------TEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1343 -------~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
...|+-||++|-+-.-.|.+-.+....
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 456999999998777777777666554
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.76 E-value=0.0015 Score=85.13 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=57.8
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-----EcCC---C---CcChHHHHHHh
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-----LDLW---W---NPTTEDQAIDR 1350 (1413)
Q Consensus 1282 gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~-----lDp~---W---NP~~e~QAiGR 1350 (1413)
.+.|..=+.+|+..+|...-+-|.+ +.++||+ ||...+-|+||.+- +||+ |||. | .|-...|..||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~-g~iqvlv-statlawgvnlpah-tViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD-GHIQVLV-STATLAWGVNLPAH-TVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc-CceeEEE-eehhhhhhcCCCcc-eEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 3556777899999999999999987 9999999 88999999999864 4554 5553 4 45577899999
Q ss_pred hhccC
Q 000575 1351 AHRIG 1355 (1413)
Q Consensus 1351 vhRIG 1355 (1413)
++|.+
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 99976
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.0011 Score=85.28 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCeEEEEccc---HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccc---cccccCcc-ccC
Q 000575 1258 GEKAIVFSQW---TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA---ASLGLNMV-AAC 1330 (1413)
Q Consensus 1258 ~~KvIIFSq~---t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~Stka---Gg~GLNLq-~An 1330 (1413)
|.-.|||.+- ...++.|..+|+.+|+....++.. +.+.++.|.. +++.|||....- .-.||+|. ...
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEecccccceeecCCchhhee
Confidence 4467999998 889999999999999999888664 3788999998 999999965443 34699996 788
Q ss_pred EEEEEcCC
Q 000575 1331 HVLLLDLW 1338 (1413)
Q Consensus 1331 ~VI~lDp~ 1338 (1413)
++||+..|
T Consensus 409 YaIF~GvP 416 (1187)
T COG1110 409 YAVFYGVP 416 (1187)
T ss_pred EEEEecCC
Confidence 89999987
No 135
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.63 E-value=0.001 Score=84.57 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-E---c----CCCCcChHHHHHHhhhccCCCCcE
Q 000575 1289 DGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-L---D----LWWNPTTEDQAIDRAHRIGQTRPV 1360 (1413)
Q Consensus 1289 dGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~-l---D----p~WNP~~e~QAiGRvhRIGQtr~V 1360 (1413)
+|+.=+--++-+---|+. +=++||+ +|...+-|+|+.+-+.||- + | -..+|.-..|.-|||+|-|=-..=
T Consensus 637 H~GlLPivKE~VE~LFqr-GlVKVLF-ATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tG 714 (1248)
T KOG0947|consen 637 HGGLLPIVKEVVELLFQR-GLVKVLF-ATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETG 714 (1248)
T ss_pred cccchHHHHHHHHHHHhc-CceEEEe-ehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCc
Confidence 555555445545555776 7889988 6699999999997666653 1 1 236899999999999999965543
Q ss_pred EEEEEEeCCC
Q 000575 1361 SVLRLTVKNT 1370 (1413)
Q Consensus 1361 ~V~rLi~kdT 1370 (1413)
+|. ++.++.
T Consensus 715 TVi-i~~~~~ 723 (1248)
T KOG0947|consen 715 TVI-IMCKDS 723 (1248)
T ss_pred eEE-EEecCC
Confidence 333 344444
No 136
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.46 E-value=0.00013 Score=87.59 Aligned_cols=130 Identities=20% Similarity=0.239 Sum_probs=105.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
-+.+.|||++..+-+..|.-+|...+|+...++..|.+++|-+-+++|...+. -||| .|++++.||+.+...|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~-~VLi-aTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS-GVLI-ATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC-eEEE-eehhhhccCCCCCcceEEEee
Confidence 45789999999999999999999999999999999999999999999998443 3555 679999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEe----------------CC----CHHHHHHHHHHHHHHHHHHH
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV----------------KN----TVEDRILALQQKKREMVASA 1389 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~----------------kd----TIEErIl~lq~~K~~l~~~~ 1389 (1413)
.|-....+..|-||.-|-+. +.|.|.-.=. .+ -|++.|+.....+-.++..+
T Consensus 540 VPrtseiYVHRSGRTARA~~-~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS-EGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred cCCccceeEecccccccccC-CCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999763 2344432110 01 24777777777776666544
No 137
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.42 E-value=0.0053 Score=70.80 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
.|..-|||+-...-.+.+...|+.+||..-.|+..+-+.+|.-+-+.|-. +++.|++. |-|.|.|++-.....||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqviva-tvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVA-TVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEE-EeeecccCCCCCeeEEEecc
Confidence 34556888888888899999999999999999999999999998888887 88999995 58899999999999999999
Q ss_pred CCCCcChHHHH
Q 000575 1337 LWWNPTTEDQA 1347 (1413)
Q Consensus 1337 p~WNP~~e~QA 1347 (1413)
++-.-...-||
T Consensus 394 l~ksienyyqa 404 (695)
T KOG0353|consen 394 LPKSIENYYQA 404 (695)
T ss_pred cchhHHHHHHH
Confidence 88777777783
No 138
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.40 E-value=0.00035 Score=81.54 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=85.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1333 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI 1333 (1413)
.-.|.|||+.-..-.|-|++++.+.| +.++.++|.-.+.+|.+-++.|.. .+++.|| .|++++.||+++....||
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkfli-ctdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLI-CTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEE-EehhhhccccccCCceEE
Confidence 56899999999999999999998864 567889999999999999999998 7788777 569999999999999999
Q ss_pred EEcCCCCcChHHHHHHhhhc
Q 000575 1334 LLDLWWNPTTEDQAIDRAHR 1353 (1413)
Q Consensus 1334 ~lDp~WNP~~e~QAiGRvhR 1353 (1413)
++.++-.......||||+.|
T Consensus 582 nvtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EEecCcccchhhhhhhccch
Confidence 99999988888888888776
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.36 E-value=0.0076 Score=77.11 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc-CCCCcChHHHHHHhhhccCCC
Q 000575 1289 DGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD-LWWNPTTEDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1289 dGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD-p~WNP~~e~QAiGRvhRIGQt 1357 (1413)
+.+++...|..+---|+. +...||+ +|...++|+|+.+-..|+..| +..||....|+-|||+|-|=-
T Consensus 969 HaglNr~yR~~VEvLFR~-g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD 1036 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFRQ-GHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFD 1036 (1330)
T ss_pred ccccchHHHHHHHHHhhc-CceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccc
Confidence 678899999988888998 8899988 779999999999887777776 678999999999999998843
No 140
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.32 E-value=0.00029 Score=82.90 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec--------------------
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL-------------------- 1317 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~St-------------------- 1317 (1413)
..|+|||.+-.+.---|.-.|+..||+.+.++|.++...|..+|++||. +-+.++|+|-
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccC
Confidence 4799999999999999999999999999999999999999999999998 7788888764
Q ss_pred ----c-c---------cccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000575 1318 ----K-A---------ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1369 (1413)
Q Consensus 1318 ----k-a---------Gg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kd 1369 (1413)
+ + .+.||+++..+.||++|.|-++..++.|+||..|-|.+- ++.-|+...
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~G--talSfv~P~ 410 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKG--TALSFVSPK 410 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCC--ceEEEecch
Confidence 0 1 246999999999999999999999999999999977665 344455543
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.28 E-value=0.00082 Score=81.31 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=82.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d-~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
+|.-|+-||.- -+-.+...++++|.. ..+|+|+.+++-|.+-...||+. +++.|||+| +|.|-||||- ..||||
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEE
Confidence 78889999864 344566677777776 99999999999999999999984 579999966 9999999995 578999
Q ss_pred EcCC-CC--------cChHHHHHHhhhccCCCCc-EEEEEE
Q 000575 1335 LDLW-WN--------PTTEDQAIDRAHRIGQTRP-VSVLRL 1365 (1413)
Q Consensus 1335 lDp~-WN--------P~~e~QAiGRvhRIGQtr~-V~V~rL 1365 (1413)
+++. +| -....|--|||+|.|.+-+ =.|..|
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 8875 22 2345599999999987765 344433
No 142
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.27 E-value=0.00052 Score=90.31 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=97.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lD 1336 (1413)
+.+-.||||....+.+.+...|...|+....|+++|+..+|+.+.++|.. ++++|+++ |=|.|-|+|-....-||+|.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivA-TVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVA-TVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEE-EeeccCCCCCCceeEEEECC
Confidence 67889999999999999999999999999999999999999999999999 66888884 58999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1337 p~WNP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
+|=+-.-..|-+|||+|-|+....+.|
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEe
Confidence 999999999999999999998875544
No 143
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.22 E-value=0.0027 Score=83.33 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.4
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCC
Q 000575 889 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 926 (1413)
Q Consensus 889 rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiq 926 (1413)
.||+||+|++... .+.++++..|+..+.+..|||--.
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 6999999999662 346688899999999999999643
No 144
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00017 Score=79.03 Aligned_cols=55 Identities=38% Similarity=0.901 Sum_probs=47.0
Q ss_pred hhccccccCCCCCCcchhcccCcccchhhhhhhhccCCC--CCCCccccccccccchhh
Q 000575 1091 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDN--QCPTRNCKIRLSLSSVFS 1147 (1413)
Q Consensus 1091 ~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~--~Cp~~~C~~~l~~~~v~~ 1147 (1413)
...+.|.||.|...+||+|.|||+||=-||-.|+....+ .|| +|+..+....+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cP--VCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECP--VCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCC--ccccccccceEEe
Confidence 456889999999999999999999999999999976544 566 6999988877764
No 145
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.16 E-value=0.01 Score=74.10 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec----CCCCcChHHHHHHhhhccCCCCcEE
Q 000575 1290 GTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTRPVS 1361 (1413)
Q Consensus 1290 Gsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~----lD----p~WNP~~e~QAiGRvhRIGQtr~V~ 1361 (1413)
++.=+--++-+---|+. +=++||. .|...+-|||+.+-..|+- +| -|-...-.+|.-|||+|-|--..-.
T Consensus 454 sGLLPIlKE~IEILFqE-GLvKvLF-ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGi 531 (1041)
T KOG0948|consen 454 SGLLPILKEVIEILFQE-GLVKVLF-ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGI 531 (1041)
T ss_pred ccchHHHHHHHHHHHhc-cHHHHHH-hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCce
Confidence 33333333344444665 6688888 5699999999987655554 22 2446677889999999999654422
Q ss_pred EEEEEeCCCHHHH
Q 000575 1362 VLRLTVKNTVEDR 1374 (1413)
Q Consensus 1362 V~rLi~kdTIEEr 1374 (1413)
|. ++....+|..
T Consensus 532 vI-lmiDekm~~~ 543 (1041)
T KOG0948|consen 532 VI-LMIDEKMEPQ 543 (1041)
T ss_pred EE-EEecCcCCHH
Confidence 22 4555455443
No 146
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.13 E-value=0.0035 Score=65.08 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=23.9
Q ss_pred cccCccEEEEcCCcccCChhhHHHHH-HHhc-cc--CcEEEEecccC
Q 000575 883 AKVGWFRVVLDEAQSIKNHRTQVARA-CWGL-RA--KRRWCLSGTPI 925 (1413)
Q Consensus 883 ~~i~W~rVIlDEAH~IKN~~T~~ska-l~~L-~a--k~RwlLTGTPi 925 (1413)
...+|++||+||||.. ++.+-..+. +..+ .. ...+++||||-
T Consensus 92 ~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp CTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 3467999999999974 344443332 2222 22 26799999995
No 147
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.07 E-value=0.00029 Score=75.97 Aligned_cols=52 Identities=38% Similarity=0.800 Sum_probs=42.3
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhcc---------------CCCCCCCccccccccccchh
Q 000575 1093 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA---------------DDNQCPTRNCKIRLSLSSVF 1146 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~---------------~~~~Cp~~~C~~~l~~~~v~ 1146 (1413)
...|+||.+...++++++|||+||..||..|+.. ....|| .|+..+....++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--vCR~~Is~~~Lv 84 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--VCKSDVSEATLV 84 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCC--CCCCcCChhcEE
Confidence 4679999999999999999999999999998742 234677 599888765554
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.98 E-value=0.14 Score=67.57 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--------c
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq--------~ 1328 (1413)
.|..|||-+.....-++|.+.|...||++-.++.... ++++.|-+=.- ..-.|-| +|.-+|.|-+.. .
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG-~~GaVTI-ATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAG-QPGTVTI-ATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcC-CCCcEEE-eccCcCCCcCcccchhhHHcC
Confidence 6899999999999999999999999999998888743 44433332221 1234555 667778887654 4
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEE
Q 000575 1329 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1361 (1413)
Q Consensus 1329 An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~ 1361 (1413)
.=|||.-+.+-+...+.|..||+.|.|..-...
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 578999999999999999999999999876533
No 149
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.95 E-value=0.00036 Score=56.36 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=31.2
Q ss_pred cccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1096 CGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1096 C~iC~d~~~~~-vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
|++|.+...++ ++++|||.||.+|+..++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 68999999999999999888 678873
No 150
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00039 Score=73.09 Aligned_cols=50 Identities=40% Similarity=0.920 Sum_probs=37.7
Q ss_pred hccccccCCCCCCc--chhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000575 1092 SLAICGICNDPPED--AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~--~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
....|++|++..+. ++.+.|||+||.+||.+.+.. ..+||. |+..+....
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~--C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPT--CRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCC--cccccchhh
Confidence 44789999998765 456999999999999988754 457886 555554443
No 151
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00041 Score=78.06 Aligned_cols=49 Identities=31% Similarity=0.810 Sum_probs=42.1
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccch
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1145 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v 1145 (1413)
..|.+|.+...+|-.|+|||+||-.||.+|...... ||. |+..+..+.+
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPl--CR~~~~pskv 288 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPL--CREKFQPSKV 288 (293)
T ss_pred CceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCc--ccccCCCcce
Confidence 569999999999999999999999999999977655 885 8887766544
No 152
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.84 E-value=0.076 Score=69.25 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCC-CHHHHHHHHHHHhcCCCccEEEeecccccccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTM-SVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1324 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsm-s~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GL 1324 (1413)
.+..|||-+.....-+.|...|...||++..++... ..++-.++|.+ .- -.-.|-| +|.-+|.|-
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~-AG-~~G~VTI-ATNMAGRGT 488 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ-AG-RKGSITI-ATNMAGRGT 488 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh-cC-CCCcEEE-eccccCCCc
Confidence 688999999999999999999999999999999874 32333445544 21 1233444 567777773
No 153
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.79 E-value=0.00059 Score=60.78 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=38.6
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1142 (1413)
..|++|.+...+|++++|||+||..||.+++.. ...||. |+..+..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~--~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPV--TGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCC--CcCCCCh
Confidence 369999999999999999999999999999977 567885 5544433
No 154
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00057 Score=85.99 Aligned_cols=48 Identities=35% Similarity=0.954 Sum_probs=42.7
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000575 1095 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1095 ~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
.|+.|+..+-+.+++.|||+||.+|+...+....-+||. |...|....
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~--Cn~aFganD 692 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPK--CNAAFGAND 692 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCC--CCCCCCccc
Confidence 499999999999999999999999999999999999996 776665544
No 155
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.66 E-value=0.001 Score=54.82 Aligned_cols=33 Identities=36% Similarity=0.765 Sum_probs=28.2
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCC
Q 000575 1096 CGICNDPPEDAVVSICGHVFCNQCICERLTADD 1128 (1413)
Q Consensus 1096 C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~ 1128 (1413)
|+||.+...+|+.+.|||.||..||..+.....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 899999999999999999999999999886643
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.60 E-value=0.01 Score=79.65 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHH-hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc-CC-CCcEEEEEEE
Q 000575 1297 RDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQ-TRPVSVLRLT 1366 (1413)
Q Consensus 1297 R~~aI~~F-n~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRI-GQ-tr~V~V~rLi 1366 (1413)
+.....+| ..+..+++||+. .-.=+|.+-...+++++ |-+--.....||+.|+.|+ +. +..-.|+.|+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 33444444 555677887776 44447777777776665 4446667778999999886 34 2335555544
No 157
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.45 E-value=0.0046 Score=72.88 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
.+..|||..-....+++...|+..|+....+.|++.+..|..-+.+|+. ....+|+ .|+.++.|++..--+.||+||.
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lv-vTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILV-VTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEE-EehhhhccCCCccccccccccC
Confidence 3567999999999999999999999999999999999999999999998 5555565 6799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEe
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1367 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~ 1367 (1413)
+=.+.....|+||+.|-|.+- ..|-|++
T Consensus 339 p~~~klFvhRVgr~aragrtg--~aYs~V~ 366 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTG--RAYSLVA 366 (529)
T ss_pred CCCCceEEEEecchhhccccc--eEEEEEe
Confidence 999999999999999999763 3344443
No 158
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.24 E-value=0.0024 Score=52.00 Aligned_cols=37 Identities=43% Similarity=1.048 Sum_probs=32.6
Q ss_pred cccCCCCCCcch-hcccCcccchhhhhhhhc-cCCCCCC
Q 000575 1096 CGICNDPPEDAV-VSICGHVFCNQCICERLT-ADDNQCP 1132 (1413)
Q Consensus 1096 C~iC~d~~~~~v-it~CgHifC~~Ci~~~l~-~~~~~Cp 1132 (1413)
|++|.+....++ +++|+|.||..|+.+++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999988 899999999999999998 5556677
No 159
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.24 E-value=0.0086 Score=70.57 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=92.3
Q ss_pred eEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC
Q 000575 1260 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1339 (1413)
Q Consensus 1260 KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~W 1339 (1413)
--||||.-....+.+...|...||...-|+.+....+|..+.++|-+ +++.|+. .|-..|.|++=.....||+.+++=
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~-AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEE-EEeccccccCCcceeEEEecCchh
Confidence 45899999999999999999999999999999999999999999998 6777777 558889999999999999999999
Q ss_pred CcChHHHHHHhhhccCCCCcEEEE
Q 000575 1340 NPTTEDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1340 NP~~e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
|-+..-|--||++|-|-..=.+.|
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhHHHHHhccccccCCCccceeee
Confidence 999999999999999976555554
No 160
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.95 E-value=0.0047 Score=52.72 Aligned_cols=44 Identities=36% Similarity=0.961 Sum_probs=36.7
Q ss_pred cccccCCCCCCcchhcccCcc-cchhhhhhhhccCCCCCCCccccccc
Q 000575 1094 AICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHi-fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
..|.+|.+.+.+.++.+|||. ||..|+..++. ....||. |+..+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~--Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPI--CRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTT--TTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCc--CChhh
Confidence 469999999999999999999 99999999987 6677885 77654
No 161
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.94 E-value=0.0027 Score=52.56 Aligned_cols=36 Identities=36% Similarity=0.923 Sum_probs=20.9
Q ss_pred cccCCCCCCc----chhcccCcccchhhhhhhhccC---CCCCC
Q 000575 1096 CGICNDPPED----AVVSICGHVFCNQCICERLTAD---DNQCP 1132 (1413)
Q Consensus 1096 C~iC~d~~~~----~vit~CgHifC~~Ci~~~l~~~---~~~Cp 1132 (1413)
|+||.+ ..+ |++++|||+||.+|+..+.... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 788877 444 7888899999999999988643 33554
No 162
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.90 E-value=0.15 Score=56.54 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=27.1
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCc-cEEEecCCCchHHHHHHHHHH
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~G-GILADEMGLGKTl~aIALI~~ 691 (1413)
.|-+.|+.|+.-++.. .+ .++.--.|.|||-+..+++..
T Consensus 1 ~ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp ---HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHH
Confidence 3678999999877743 33 677778899999777676655
No 163
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.041 Score=72.91 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred CCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccc
Q 000575 639 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 718 (1413)
Q Consensus 639 P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~ 718 (1413)
|..-..++|-++|++|++-+.+- .+.++|--.|.|||+.+-..|......
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~~----------------------- 161 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALRD----------------------- 161 (1041)
T ss_pred HHHhCCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHHc-----------------------
Confidence 33335678999999999988743 457999999999999986666432110
Q ss_pred cccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000575 719 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 797 (1413)
Q Consensus 719 ~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 797 (1413)
...+.-..|- +|..|=-.++...+..- .--|-+++|....
T Consensus 162 --------------------------------------~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I 202 (1041)
T COG4581 162 --------------------------------------GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI 202 (1041)
T ss_pred --------------------------------------CCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee
Confidence 0125667775 56688888887776521 1234666665543
Q ss_pred CCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccccc
Q 000575 798 KDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 877 (1413)
Q Consensus 798 k~~~~L~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~ 877 (1413)
. ..+.+++.|-++|++-+.+ .
T Consensus 203 N-----~~A~clvMTTEILRnMlyr----------------g-------------------------------------- 223 (1041)
T COG4581 203 N-----PDAPCLVMTTEILRNMLYR----------------G-------------------------------------- 223 (1041)
T ss_pred C-----CCCceEEeeHHHHHHHhcc----------------C--------------------------------------
Confidence 3 3566888888999764321 0
Q ss_pred ccCCccccCccEEEEcCCcccCChh-hHHHHHH-Hhc-ccCcEEEEecccCCCchHHHHHhhhhc
Q 000575 878 VAGPLAKVGWFRVVLDEAQSIKNHR-TQVARAC-WGL-RAKRRWCLSGTPIQNAIDDLYSYFRFL 939 (1413)
Q Consensus 878 ~~~pL~~i~W~rVIlDEAH~IKN~~-T~~skal-~~L-~ak~RwlLTGTPiqN~l~DLyslL~FL 939 (1413)
...+..+. +||+||.|+|.... .-.+.-+ ..| +.-+-++||||- -+..|+...+.-+
T Consensus 224 -~~~~~~i~--~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~~~ 283 (1041)
T COG4581 224 -SESLRDIE--WVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--PNAEEFAEWIQRV 283 (1041)
T ss_pred -cccccccc--eEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--CCHHHHHHHHHhc
Confidence 01133333 49999999998754 3344433 233 444789999994 2455555555544
No 164
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0054 Score=74.16 Aligned_cols=53 Identities=30% Similarity=0.758 Sum_probs=40.6
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccC--CCCCCCccccccccccch
Q 000575 1093 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLSSV 1145 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~--~~~Cp~~~C~~~l~~~~v 1145 (1413)
...|+||..++.-|+.|.|||+||..||..++... ..-|.++-|...+....+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 57899999999999999999999999999987543 222333358777665443
No 165
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.64 E-value=0.01 Score=66.83 Aligned_cols=46 Identities=35% Similarity=0.770 Sum_probs=36.0
Q ss_pred ccccccCCCCCCc--------chhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000575 1093 LAICGICNDPPED--------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~--------~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1141 (1413)
...|++|.+...+ +++++|+|.||..||.+|+.. ...||. |+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCC--CCCEee
Confidence 3689999987433 367889999999999999864 568985 887653
No 166
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.60 E-value=0.0059 Score=73.48 Aligned_cols=48 Identities=33% Similarity=0.722 Sum_probs=39.8
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000575 1093 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1143 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1143 (1413)
...|++|.+....+++++|+|.||..||..++... ..||. |+..+...
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~--Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPL--CRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCC--CCCccccc
Confidence 35899999999999999999999999999988653 47884 87765543
No 167
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.52 E-value=0.0078 Score=47.18 Aligned_cols=38 Identities=45% Similarity=1.020 Sum_probs=32.2
Q ss_pred cccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1096 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1096 C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
|.+|.+....+++++|+|.||..|+..++......||.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 78898888888899999999999999998755566773
No 168
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.29 E-value=0.1 Score=70.09 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc--C
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA--C 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~A--n 1330 (1413)
.+.++|||.....+++.+...|.. .++.... .+.. ..|.+++++|+. ++..||| .+....+|+++..- .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~-~~~~iLl-gt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNN-GEKAILL-GTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHh-CCCeEEE-EcceeecccccCCCceE
Confidence 456899999999999999999875 3444332 2322 478999999997 5556777 56999999999854 4
Q ss_pred EEEEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000575 1331 HVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1331 ~VI~lDp~W-NP~-----------------------------~e~QAiGRvhRIGQtr~V~V 1362 (1413)
.||+.-+|+ +|. ...|++||+.|-.+.+-|.+
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 566666554 332 23499999999877766533
No 169
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.0098 Score=66.53 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=38.9
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhc-cCCCCCCCccccccccccc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLT-ADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~-~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
..|.+|.+.++.+..++|||+||.-||....+ .....||. |+....+..
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cpl--CRak~~pk~ 265 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPL--CRAKVYPKK 265 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCch--hhhhccchh
Confidence 56999999999999999999999999999444 44455995 766554433
No 170
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=94.92 E-value=0.014 Score=48.40 Aligned_cols=38 Identities=45% Similarity=0.846 Sum_probs=30.1
Q ss_pred ccccCCCCC---CcchhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1095 ICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1095 ~C~iC~d~~---~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
.|+||.+.. +..+.++|+|+||..|+.+|+... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 589998864 345678899999999999999774 57884
No 171
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.91 E-value=0.067 Score=66.48 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 725 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 725 (1413)
+|-..|..||...+++-- .||--..|.|||++.-+++... ..
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl-~~------------------------------ 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHL-AR------------------------------ 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHH-HH------------------------------
Confidence 477899999999998744 4777789999999985555331 00
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000575 726 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTK 798 (1413)
Q Consensus 726 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SL-L~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k 798 (1413)
+-.+++||++|.++ +.|-++-|++- .|+|+..-...|..
T Consensus 452 -----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE~ 491 (935)
T KOG1802|consen 452 -----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRED 491 (935)
T ss_pred -----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhhh
Confidence 12357999999985 69999988753 58888877766643
No 172
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.71 E-value=0.016 Score=53.65 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=34.6
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
..|+||.+.+.+||+++|||.|++.||..++......||.
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~ 44 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF 44 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC
Confidence 5799999999999999999999999999999987888986
No 173
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.53 E-value=0.022 Score=46.31 Aligned_cols=39 Identities=41% Similarity=0.921 Sum_probs=31.1
Q ss_pred ccccCCCCCCcch-hcccCcccchhhhhhhhccCCCCCCC
Q 000575 1095 ICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1095 ~C~iC~d~~~~~v-it~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
.|.+|.+....++ +.+|+|.||..|+..++......||.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~ 40 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence 3889988875554 45599999999999998876667884
No 174
>PHA02926 zinc finger-like protein; Provisional
Probab=94.46 E-value=0.021 Score=62.53 Aligned_cols=47 Identities=30% Similarity=0.786 Sum_probs=35.6
Q ss_pred ccccccCCCCC------C---cchhcccCcccchhhhhhhhccC-----CCCCCCcccccccc
Q 000575 1093 LAICGICNDPP------E---DAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1093 ~~~C~iC~d~~------~---~~vit~CgHifC~~Ci~~~l~~~-----~~~Cp~~~C~~~l~ 1141 (1413)
...|+||.+.. . ..++.+|+|.||..||..|.... ...||. |+..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi--CR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI--CRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC--Ccceee
Confidence 47899999753 1 25788999999999999998653 335985 877653
No 175
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.18 E-value=0.26 Score=63.35 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCc------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQY-RRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNM------ 1326 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~-~rldGsms~~qR~~aI~~Fn~d---~~i~VLL~StkaGg~GLNL------ 1326 (1413)
.|.-.|.|+.+..| ..+...|... +++ +.+.|..+ .|..++++|... +.-.||+ .+.+..+|+++
T Consensus 470 ~G~~lvLfTS~~~~-~~~~~~l~~~-l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSHI-SAIGQLVELG-IPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHHH-HHHHHHHHhh-cCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCC
Confidence 55666677776555 5566666543 222 45556543 467899999985 3345666 67999999999
Q ss_pred ----cccCEEEEEcCCCCcC
Q 000575 1327 ----VAACHVLLLDLWWNPT 1342 (1413)
Q Consensus 1327 ----q~An~VI~lDp~WNP~ 1342 (1413)
...+.|||.-+|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 3578899988887764
No 176
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.04 E-value=0.032 Score=46.33 Aligned_cols=37 Identities=30% Similarity=0.891 Sum_probs=29.7
Q ss_pred cccCCCCC---CcchhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1096 CGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1096 C~iC~d~~---~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
|.+|.... ..++++.|||+||..|+.... .....||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 78887765 347899999999999999988 55667874
No 177
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.78 E-value=0.042 Score=63.83 Aligned_cols=49 Identities=27% Similarity=0.738 Sum_probs=37.6
Q ss_pred cccccCCCC----CCc-chhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000575 1094 AICGICNDP----PED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1094 ~~C~iC~d~----~~~-~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
..|++|... +.. ..+..|||.||..|+...+......|| .|+..+....
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 469999863 221 244589999999999999877777898 6988877655
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.14 E-value=0.25 Score=54.99 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=22.4
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCchH
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 930 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l~ 930 (1413)
.+..||+||||++... .....+.++....++.++|=|.|....
T Consensus 119 ~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 3578999999998543 444456677788999999999886543
No 179
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.12 E-value=0.026 Score=64.52 Aligned_cols=46 Identities=35% Similarity=0.797 Sum_probs=37.4
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1142 (1413)
-.|.||.+-..-|++++|+|.||.-||..+|... ..||. |...+..
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~--C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPT--CCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCc--eecccch
Confidence 3599999998899999999999999999998644 56885 6555443
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.07 E-value=0.21 Score=64.08 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=30.0
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEeccc
Q 000575 889 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 924 (1413)
Q Consensus 889 rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTP 924 (1413)
.||+||-|++... .+.+.++.+|+....+=..||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 5999999999875 7889999999888877777874
No 181
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=92.97 E-value=0.046 Score=48.17 Aligned_cols=45 Identities=33% Similarity=0.667 Sum_probs=31.9
Q ss_pred ccccccCCCCCCcchhc-ccCcccchhhhhhhh-ccCCCCCCCcccc
Q 000575 1093 LAICGICNDPPEDAVVS-ICGHVFCNQCICERL-TADDNQCPTRNCK 1137 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit-~CgHifC~~Ci~~~l-~~~~~~Cp~~~C~ 1137 (1413)
...|++...+..+|+.. .|+|+|..+.|.+++ .....+||...|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 36799999999999985 899999999999999 3455689988874
No 182
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.60 E-value=4.3 Score=53.38 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1330 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An------ 1330 (1413)
.+..|||-+.....-+++.+.|.+.||+...++-.-. .|++-+-++.- ....|-| +|.-+|.|-++.-..
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG-~~gaVTi-ATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG-QPGAVTI-ATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC-CCCcccc-ccccccCCcccccCCCHHHHH
Confidence 6899999999999999999999999999988888755 55555555553 2233455 667788888876332
Q ss_pred -----EEEEEcCCCCcChHHHHHHhhhccCC
Q 000575 1331 -----HVLLLDLWWNPTTEDQAIDRAHRIGQ 1356 (1413)
Q Consensus 1331 -----~VI~lDp~WNP~~e~QAiGRvhRIGQ 1356 (1413)
+||=-+-.=+-....|--||++|.|-
T Consensus 504 ~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 504 ELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred HhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 45556666555566688899999993
No 183
>PRK10536 hypothetical protein; Provisional
Probab=92.34 E-value=0.64 Score=53.38 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.2
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCch
Q 000575 888 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 929 (1413)
Q Consensus 888 ~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN~l 929 (1413)
.+|||||||++.- .+....+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 6799999999965 455566778888999999999977653
No 184
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=92.29 E-value=0.058 Score=60.61 Aligned_cols=38 Identities=34% Similarity=0.785 Sum_probs=33.2
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCC
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1132 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp 1132 (1413)
..|.||.+-..-+++|+|||.||.-||..+|....+ ||
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~-CP 63 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF-CP 63 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCCC-Cc
Confidence 469999999999999999999999999999976543 55
No 185
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=91.91 E-value=0.12 Score=46.19 Aligned_cols=42 Identities=33% Similarity=0.896 Sum_probs=22.3
Q ss_pred cccccCCCCCCcch-hcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000575 1094 AICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~v-it~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
-.|.+|.+-...|| +..|.|+||..||...+... ||. |..+.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~---CPv--C~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE---CPV--CHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB----SS--S--B-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCC---CCC--cCChH
Confidence 46999999999997 68999999999998877644 664 55543
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=91.82 E-value=0.63 Score=50.01 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=52.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc----CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecc--ccccccCcc--c
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK--AASLGLNMV--A 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~----gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~Stk--aGg~GLNLq--~ 1328 (1413)
.+.++|||...-..++.+...|+.. ++....- + ...+.+++++|..+. -.||+ ++. ...+|+++. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~-~~il~-~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGE-GAILL-AVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSS-SEEEE-EETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhcc-CeEEE-EEecccEEEeecCCCch
Confidence 5689999999999999999999875 3443333 2 347899999999943 33444 556 889999998 4
Q ss_pred cCEEEEEcCCC
Q 000575 1329 ACHVLLLDLWW 1339 (1413)
Q Consensus 1329 An~VI~lDp~W 1339 (1413)
+..||+.-+|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 66788887776
No 187
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.34 E-value=0.57 Score=63.02 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 689 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI 689 (1413)
...+|+|.+.+..+.+..... +-+++--.+|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 457899998777665543321 234555589999998775444
No 188
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.16 Score=58.11 Aligned_cols=56 Identities=25% Similarity=0.518 Sum_probs=47.9
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccchhhhhh
Q 000575 1093 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKAT 1150 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~~~~~ 1150 (1413)
..+|.||...+..|+...|+|.||..||......+...|+. |+..+..+-++.+..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Cav--CR~pids~i~~~psl 62 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAV--CRFPIDSTIDFEPSL 62 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCce--ecCCCCcchhcchhh
Confidence 47899999999999999999999999999999888888984 998887766665443
No 189
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.48 E-value=1.2 Score=58.40 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=75.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVL 1333 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~--An~VI 1333 (1413)
.+.++|||...-.++..+...|...... .+...|.. .+.+.++.|...++. -+++.+....+|+|+.. ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4458999999989999999999887663 44555554 455899999986654 45556799999999984 47788
Q ss_pred EEcCCCC-cC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000575 1334 LLDLWWN-PT-----------------------------TEDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1334 ~lDp~WN-P~-----------------------------~e~QAiGRvhRIGQtr~V~V 1362 (1413)
+.-.||= |. ...||+||+.|--+-+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8877764 33 23499999999545555554
No 190
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.097 Score=44.81 Aligned_cols=47 Identities=32% Similarity=0.702 Sum_probs=40.4
Q ss_pred hccccccCCCCCCcchhcccCccc-chhhhhhhhccCCCCCCCccccccc
Q 000575 1092 SLAICGICNDPPEDAVVSICGHVF-CNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~vit~CgHif-C~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
..++|.||.+.|.+.|+-.|||.- |.+|-.+.++.....||. |+..+
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPi--CRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPI--CRAPI 53 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcc--hhhHH
Confidence 347899999999999999999985 999999998888889995 66543
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.99 E-value=1.2 Score=57.76 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
.+|+-|+.-...++....... .|+|=.-.|.|||+..|+-.++
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q---~~llESPTGTGKSLsLLCS~LA 63 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQ---NGLLESPTGTGKSLSLLCSTLA 63 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhh---hhhccCCCCCCccHHHHHHHHH
Confidence 468889887777776655443 3899999999999988765543
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=89.93 E-value=3.8 Score=53.45 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=31.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
..|-+.|+.||.+.+... .-.|+--..|.|||-++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 458889999999887431 12466677899999988888754
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.90 E-value=1.4 Score=46.22 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEEEEcCCC-
Q 000575 1270 MLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVLLLDLWW- 1339 (1413)
Q Consensus 1270 ~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~--An~VI~lDp~W- 1339 (1413)
.++.+...++..++ ..+.+-| ....+..++++.|....+-.||+ ++...++|+++.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~-~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILL-ATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEE-EccceecceecCCCCeeEEEEEecCCC
Confidence 34555555555543 3344444 34446799999999754334555 5566999999983 56677777554
Q ss_pred CcC
Q 000575 1340 NPT 1342 (1413)
Q Consensus 1340 NP~ 1342 (1413)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 194
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=0.045 Score=63.55 Aligned_cols=47 Identities=36% Similarity=0.834 Sum_probs=39.1
Q ss_pred cccccCCCCCCcchhc-ccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000575 1094 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit-~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1142 (1413)
..|++|.+.......+ -|+|-||.+||...+....+.||. |+..+..
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecpt--cRk~l~S 91 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPT--CRKKLVS 91 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCch--HHhhccc
Confidence 5799999877666554 599999999999999999999996 8776543
No 195
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.41 E-value=0.21 Score=58.44 Aligned_cols=48 Identities=27% Similarity=0.874 Sum_probs=40.6
Q ss_pred hhhhccccccCCCCCCcchhcccCcccchhhhhhhhccC-CCCCCCccc
Q 000575 1089 LEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-DNQCPTRNC 1136 (1413)
Q Consensus 1089 le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~-~~~Cp~~~C 1136 (1413)
+.+....|.||.+...+.-+.+|||++|..|+..|-..+ ...||.-.|
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 455667899999999999999999999999999998766 678997444
No 196
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.93 E-value=0.93 Score=58.98 Aligned_cols=55 Identities=27% Similarity=0.271 Sum_probs=39.4
Q ss_pred cEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------ccccCCCEEEEechhh
Q 000575 759 GTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIV 816 (1413)
Q Consensus 759 ~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~------~~L~~yDVVITTY~~l 816 (1413)
.+||++|. ++..|+.+-++++|+ .-.+.+||..-..... ...++..|||=|.+.+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 48999998 488999999999885 2458889886533211 1124567888887665
No 197
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.75 E-value=0.13 Score=56.47 Aligned_cols=51 Identities=22% Similarity=0.573 Sum_probs=40.5
Q ss_pred cccccCCCC-----CCcchhcc-cCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000575 1094 AICGICNDP-----PEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1094 ~~C~iC~d~-----~~~~vit~-CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
..|++|.-. ....++.| |.|-+|..|+....+.+.-+||.+.|...|....
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 369999642 22234556 9999999999999999999999999988876543
No 198
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.65 E-value=1.4 Score=59.83 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHV 1332 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~--An~V 1332 (1413)
.+.+++||.....++..+...|..... .+..+.-+++...|.+++++|+. .+-.||+ .+.+..+|+++.. ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLl-G~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILL-GTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEE-ecCcccCccccCCCceEEE
Confidence 445777777777888888888875422 12222223333458999999997 3344666 5688999999984 4778
Q ss_pred EEEcCCC-CcCh-----------------------------HHHHHHhhhccCCCCcEEE
Q 000575 1333 LLLDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1333 I~lDp~W-NP~~-----------------------------e~QAiGRvhRIGQtr~V~V 1362 (1413)
|+.-+|+ +|.. ..|++||+.|-.+.+-|.|
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 8888776 4541 1388999999877766533
No 199
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.43 E-value=2.7 Score=56.33 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq--~An~VI~ 1334 (1413)
.+.+++|+.....+++.+...|....+.. ...|... .|.+++++|+. ++-.||+ .+....+|+++. .+..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~vLl-G~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQILL-GLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeEEE-ecchhhCCCCCCCCCeEEEEE
Confidence 35677887777888888888887655444 5555322 35679999997 4455776 558999999996 3555667
Q ss_pred EcCC-CCcCh-----------------------------HHHHHHhhhccCCCCcEEE
Q 000575 1335 LDLW-WNPTT-----------------------------EDQAIDRAHRIGQTRPVSV 1362 (1413)
Q Consensus 1335 lDp~-WNP~~-----------------------------e~QAiGRvhRIGQtr~V~V 1362 (1413)
.-+| .+|.. ..|++||+.|--.-+-|.|
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 6644 34421 2389999999665555533
No 200
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.81 E-value=0.24 Score=55.98 Aligned_cols=43 Identities=33% Similarity=0.865 Sum_probs=37.4
Q ss_pred cccccCCCCCCcchhc-ccCcccchhhhhhhhccCCCCCCCccccc
Q 000575 1094 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKI 1138 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit-~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~ 1138 (1413)
-.|+.|......++-+ .|+|.||.+||...|...+..||. |..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cpn--C~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPN--CSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCC--ccc
Confidence 3599999988888887 699999999999999999999994 653
No 201
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.79 E-value=4.9 Score=44.40 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=24.5
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhcc-cCcEEEEecccCCC
Q 000575 887 WFRVVLDEAQSIKNHRTQVARACWGLR-AKRRWCLSGTPIQN 927 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~~T~~skal~~L~-ak~RwlLTGTPiqN 927 (1413)
.++||||||..+-.. .....+..+. ...+++|.|-|-|-
T Consensus 94 ~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 94 KDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp TSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred ccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcchh
Confidence 458999999999653 3444444443 47799999998763
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=0.32 Score=54.98 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=36.6
Q ss_pred hhccccccCCCCCCcch-hcccCcccchhhhhhhhcc-CCCCCCCcccccc
Q 000575 1091 ASLAICGICNDPPEDAV-VSICGHVFCNQCICERLTA-DDNQCPTRNCKIR 1139 (1413)
Q Consensus 1091 ~~~~~C~iC~d~~~~~v-it~CgHifC~~Ci~~~l~~-~~~~Cp~~~C~~~ 1139 (1413)
++...|++|.++|..|. +.+|+|++|.-||.....- ....||. |...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~--Cg~~ 285 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL--CGEN 285 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc--cCCC
Confidence 34578999999999885 5669999999999987654 4668885 5443
No 203
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=87.41 E-value=2.5 Score=55.82 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=66.4
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000575 643 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 722 (1413)
Q Consensus 643 l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 722 (1413)
+....|+-|+.|..-|. .|.|.--.+|=|||+++ ++.++...
T Consensus 82 lG~r~ydVQliGgl~Lh---------~G~IAEM~TGEGKTL~a-tlpaylnA---------------------------- 123 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLH---------EGQIAEMKTGEGKTLVA-TLPSYLNA---------------------------- 123 (939)
T ss_pred hCCCcchhHHHhhhhhc---------CCceeeecCCCChhHHH-HHHHHHHh----------------------------
Confidence 34456667888876664 57788888999999987 33333211
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000575 723 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTK 798 (1413)
Q Consensus 723 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k 798 (1413)
...+++-||.+.--| ..|...+.+|+. |+|.+..+.....
T Consensus 124 --------------------------------L~GkgVhVVTvNdYLA~RDae~m~~vy~~LG----Ltvg~i~~~~~~~ 167 (939)
T PRK12902 124 --------------------------------LTGKGVHVVTVNDYLARRDAEWMGQVHRFLG----LSVGLIQQDMSPE 167 (939)
T ss_pred --------------------------------hcCCCeEEEeCCHHHHHhHHHHHHHHHHHhC----CeEEEECCCCChH
Confidence 112357888887644 479999998874 8888775543333
Q ss_pred CcccccCCCEEEEechhhhc
Q 000575 799 DPCELAKFDVVITTYSIVSM 818 (1413)
Q Consensus 799 ~~~~L~~yDVVITTY~~l~~ 818 (1413)
.....-..||+-+|-..|.-
T Consensus 168 err~aY~~DItYgTn~e~gF 187 (939)
T PRK12902 168 ERKKNYACDITYATNSELGF 187 (939)
T ss_pred HHHHhcCCCeEEecCCcccc
Confidence 33334477888888776643
No 204
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.01 E-value=2.6 Score=55.69 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeec--ccccccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSL--KAASLGL 1324 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d---~~i~VLL~St--kaGg~GL 1324 (1413)
.+..+|||...-..++.+...+...|+ ..+.+.+.- ..++.+++++|... +...||+ +. ...+||+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~-av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLL-SVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEE-EecCCcccCcc
Confidence 457888888888888888887765432 223333332 25789999999752 2334555 54 5788999
Q ss_pred Ccc--ccCEEEEEcCCC-Cc
Q 000575 1325 NMV--AACHVLLLDLWW-NP 1341 (1413)
Q Consensus 1325 NLq--~An~VI~lDp~W-NP 1341 (1413)
|+. .+..||++-+|+ ||
T Consensus 599 Df~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred ccCCCCCcEEEEEccCCCCC
Confidence 998 468888888887 55
No 205
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=85.81 E-value=4.6 Score=53.26 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=52.7
Q ss_pred eEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCcc--ccCEEE
Q 000575 1260 KAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNMV--AACHVL 1333 (1413)
Q Consensus 1260 KvIIFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d---~~i~VLL~StkaGg~GLNLq--~An~VI 1333 (1413)
+++||.....+++.+...|... +.+ +...|. ..|.++++.|.+. ++-.||+ .+....+|+++. ....||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-EeccccccccCCCCceEEEE
Confidence 4677777777788888888643 333 444564 3578899888752 3445666 458889999997 467888
Q ss_pred EEcCCC
Q 000575 1334 LLDLWW 1339 (1413)
Q Consensus 1334 ~lDp~W 1339 (1413)
+.-+|+
T Consensus 611 I~kLPF 616 (697)
T PRK11747 611 ITKIPF 616 (697)
T ss_pred EEcCCC
Confidence 877776
No 206
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.32 Score=55.41 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=38.0
Q ss_pred cccccCCCCC---CcchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000575 1094 AICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1094 ~~C~iC~d~~---~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
..|.||.... ..-++++|.|.|=..|+++|+..-.++||. |++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv--Crt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV--CRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc--cCCCC
Confidence 6799998753 235789999999999999999999999995 87654
No 207
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=85.40 E-value=0.33 Score=52.02 Aligned_cols=37 Identities=38% Similarity=0.860 Sum_probs=31.6
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCC
Q 000575 1092 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADD 1128 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~ 1128 (1413)
-.+.|.||-..-+.||++.|||.||..|....+...+
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~ 231 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD 231 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCC
Confidence 3468999999999999999999999999877665543
No 208
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.84 E-value=1.5 Score=54.19 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=42.1
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc--CCCEEEEechhhh
Q 000575 760 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA--KFDVVITTYSIVS 817 (1413)
Q Consensus 760 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~--~yDVVITTY~~l~ 817 (1413)
.|||+|+. |..|-.+-|..... ...+++....|.-....+.++- ..||||.|-..|-
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 69999997 66888887776554 4578999888886554443332 5689999998874
No 209
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.64 E-value=4.4 Score=50.12 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCC----cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKD----SSI----QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~----~gI----~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~ 1328 (1413)
.+-+.|.||..+.+.+++-...+. -+- .+..|.|+-..++|.++-.+.-. +...-+| +|.|..+|++.-.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~giI-aTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGII-ATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEEE-ecchhhhcccccc
Confidence 567899999999887766544332 121 23467899999999998777665 5555555 7899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCC
Q 000575 1329 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1356 (1413)
Q Consensus 1329 An~VI~lDp~WNP~~e~QAiGRvhRIGQ 1356 (1413)
-+.|+++.-+..-+...|-.||++|-..
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCC
Confidence 9999999999999999999999999553
No 210
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=83.85 E-value=7.4 Score=50.44 Aligned_cols=41 Identities=24% Similarity=0.140 Sum_probs=33.4
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCC
Q 000575 885 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 927 (1413)
Q Consensus 885 i~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN 927 (1413)
..+++||||||-++-. ...++.+..+....|++|-|=|-|-
T Consensus 264 l~~dvlIvDEaSMvd~--~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 264 LHLDVLVVDEASMVDL--PMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred CCCCeEEEChHhcccH--HHHHHHHHhcccCCEEEEecchhhc
Confidence 3578999999999954 4666778888889999999988764
No 211
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.73 E-value=8.1 Score=45.86 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=39.8
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcccc-cCCCEEEEechhhhc
Q 000575 760 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-KDPCEL-AKFDVVITTYSIVSM 818 (1413)
Q Consensus 760 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~-k~~~~L-~~yDVVITTY~~l~~ 818 (1413)
.||+.|+. +-.|-.+++. .+...-.+++.++.|.... .....| .+-++||+|-..+.-
T Consensus 78 alvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad 138 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD 138 (442)
T ss_pred EEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc
Confidence 59999997 6678877775 5555567888888776432 222223 467899999887753
No 212
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.57 E-value=0.45 Score=54.81 Aligned_cols=42 Identities=31% Similarity=0.802 Sum_probs=35.6
Q ss_pred ccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccc
Q 000575 1093 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1137 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~ 1137 (1413)
...|+||.+....+.+.+|+|.||..|+..... ....||. |+
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~--cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPV--CR 54 (386)
T ss_pred cccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcc--cC
Confidence 467999999888888899999999999999887 5556774 66
No 213
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=83.28 E-value=3.8 Score=47.57 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=59.8
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000575 644 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 644 ~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 723 (1413)
...+++-|..|+--|. .|-|.=-.+|=|||+++. +.+....
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~-l~a~~~A----------------------------- 115 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAA-LPAALNA----------------------------- 115 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHH-HHHHHHH-----------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHH-HHHHHHH-----------------------------
Confidence 3456677888886663 567888889999999884 3333210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKD 799 (1413)
Q Consensus 724 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~ 799 (1413)
...+++=||+...-| .+|...+-+++. +++...........
T Consensus 116 -------------------------------L~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 116 -------------------------------LQGKGVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEE 160 (266)
T ss_dssp -------------------------------TTSS-EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHH
T ss_pred -------------------------------HhcCCcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHH
Confidence 001346777777655 368888877764 77777766543222
Q ss_pred cccccCCCEEEEechhhhc
Q 000575 800 PCELAKFDVVITTYSIVSM 818 (1413)
Q Consensus 800 ~~~L~~yDVVITTY~~l~~ 818 (1413)
....-..||+-.|-..+.-
T Consensus 161 r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHH
T ss_pred HHHHHhCcccccccchhhH
Confidence 2233467888888777754
No 214
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=83.19 E-value=3.2 Score=52.24 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=31.7
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 643 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 643 l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
+...|-+-|+.|+.+....-. + -++=-.+|.|||.+..-+|..
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred CCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHH
Confidence 445688899999999886532 1 355557899999988777754
No 215
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=81.35 E-value=7.6 Score=52.98 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 686 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aI 686 (1413)
...||-|.+-+..+.+..... .-.++=-.+|.|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 457889998666665544321 113333479999998764
No 216
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=81.30 E-value=9.6 Score=49.24 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=32.3
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCC
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 927 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN 927 (1413)
.+++||||||-++-.. ...+.+..+....|++|.|=|-|=
T Consensus 259 ~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 259 PLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQL 298 (586)
T ss_pred cccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhhC
Confidence 5789999999999643 566677778888999999988663
No 217
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=81.21 E-value=4.1 Score=42.75 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCC----cEEecCCCCCHHHHHHHHHHHhcCCC--ccEEEeeccc--cccccCccc--cCEEEEEcCCC
Q 000575 1270 MLDLLEASLKDSSI----QYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKA--ASLGLNMVA--ACHVLLLDLWW 1339 (1413)
Q Consensus 1270 ~LdlLe~~L~~~gI----~~~rldGsms~~qR~~aI~~Fn~d~~--i~VLL~Stka--Gg~GLNLq~--An~VI~lDp~W 1339 (1413)
.++.+...++..++ ..+.+.+... .+..++++.|+...+ -.||+ ++.. .+||+||.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 45555566665543 2344444432 355789999997432 23555 4344 799999984 56778877664
No 218
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=80.56 E-value=14 Score=45.97 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=94.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc-cccCccccCEEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLLL 1335 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg-~GLNLq~An~VI~l 1335 (1413)
...++|||...---.-.|..+|+..++.|+.++--++..+-.++-..|.. +...|||.|-++-= .=..+..+.+||||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 56788898876666666889999999999999999999999999999998 88999999966532 23456679999999
Q ss_pred cCCCCcChHHHHHHhhhccCC----CCcEEEEEEEeCC-CH-HHHHHHHHHHH
Q 000575 1336 DLWWNPTTEDQAIDRAHRIGQ----TRPVSVLRLTVKN-TV-EDRILALQQKK 1382 (1413)
Q Consensus 1336 Dp~WNP~~e~QAiGRvhRIGQ----tr~V~V~rLi~kd-TI-EErIl~lq~~K 1382 (1413)
.||-+|.-....+.-+..-.+ ..+.+|.-|.++= .+ =|||+..+..+
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 999999988888765555433 3346666666653 22 25555544433
No 219
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=80.08 E-value=6.6 Score=51.50 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVLL 1334 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~--An~VI~ 1334 (1413)
.|++|.|||.-..+.+++++.....+..++.+++..+..+. +.| .+++|++-+ .+..+|+++-. -+.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc---cceeEEEEe-ceEEEEeccchhhceEEEE
Confidence 78999999999999999999999999999999888765522 333 568888866 77789998863 355666
Q ss_pred E--cCCCCcCh--HHHHHHhhhccCCCCcEEEE
Q 000575 1335 L--DLWWNPTT--EDQAIDRAHRIGQTRPVSVL 1363 (1413)
Q Consensus 1335 l--Dp~WNP~~--e~QAiGRvhRIGQtr~V~V~ 1363 (1413)
| ....-|.. ..|.+|||..+...+ +.||
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~e-i~v~ 384 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDNE-IYVY 384 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccCe-EEEE
Confidence 5 22334554 489999999998543 4544
No 220
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=78.66 E-value=14 Score=49.15 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=30.9
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCC
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 927 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN 927 (1413)
..++||||||+++-.. ...+.+..+....|++|-|=|-|-
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECccccc
Confidence 3578999999999543 445666677788899999987664
No 221
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=78.46 E-value=7.7 Score=46.86 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.9
Q ss_pred cCccEEEEcCCcccCC
Q 000575 885 VGWFRVVLDEAQSIKN 900 (1413)
Q Consensus 885 i~W~rVIlDEAH~IKN 900 (1413)
-.++.|||||||++..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 3578999999999987
No 222
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.83 E-value=1.5 Score=52.44 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=42.7
Q ss_pred HHHHhhhhccccccCCCCC---CcchhcccCcccchhhhhhhhcc-------CCCCCCCccccccccc
Q 000575 1085 LLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLTA-------DDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1085 ll~~le~~~~~C~iC~d~~---~~~vit~CgHifC~~Ci~~~l~~-------~~~~Cp~~~C~~~l~~ 1142 (1413)
-+..+..++..|.||.+.. ...+.++|.|+||..|...+.+. ..-+||.+.|......
T Consensus 176 ~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~ 243 (445)
T KOG1814|consen 176 TLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP 243 (445)
T ss_pred HHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc
Confidence 3445566788999998753 34678999999999999998654 1237999888765433
No 223
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=77.27 E-value=1.5 Score=40.70 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=28.4
Q ss_pred cccccCCCCCCc------------c-hhcccCcccchhhhhhhhccCCCCCCC
Q 000575 1094 AICGICNDPPED------------A-VVSICGHVFCNQCICERLTADDNQCPT 1133 (1413)
Q Consensus 1094 ~~C~iC~d~~~~------------~-vit~CgHifC~~Ci~~~l~~~~~~Cp~ 1133 (1413)
..|.||.++..+ + ....|+|.|-..||..|+.... .||.
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 459999876521 1 3467999999999999996655 7884
No 224
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=77.22 E-value=14 Score=48.67 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred ccEEEEcCCcccCCh--------hhHHHHHHHhc--ccCcEEEEeccc
Q 000575 887 WFRVVLDEAQSIKNH--------RTQVARACWGL--RAKRRWCLSGTP 924 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~--------~T~~skal~~L--~ak~RwlLTGTP 924 (1413)
|+.|||||+-.+-+. .......+..+ ++++.+++-||-
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 899999998654321 11122223333 689999999874
No 225
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=76.73 E-value=10 Score=51.00 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=25.4
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 688 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIAL 688 (1413)
...|+-|.+-...+.+-.... .-.++--..|.|||+.-+.-
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayllp 284 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLLP 284 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHHH
Confidence 457888988665555433321 11345558899999876443
No 226
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.36 E-value=0.96 Score=57.77 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=39.9
Q ss_pred hccccccCCCCCCc-----chhcccCcccchhhhhhhhccCCCCCCCccccccccccch
Q 000575 1092 SLAICGICNDPPED-----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1145 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~-----~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v 1145 (1413)
....|.||.+.... +-..+|+|+||..|+.+|+.. ...||. |+..+.....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhhhhcccc
Confidence 34679999998766 678899999999999999987 677996 6664443333
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=76.32 E-value=40 Score=44.64 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=36.9
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhhhhcccCCcc
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 945 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f~ 945 (1413)
+|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...++..++.
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 57789999999996532 23334444 446788888886665555666655555444443
No 228
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.29 E-value=1.5 Score=49.37 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=50.2
Q ss_pred EeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000575 1314 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1383 (1413)
Q Consensus 1314 L~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~lq~~K~ 1383 (1413)
++++...|.|++..+.|.||+||.+-.+.....+++|+.|.|-+-- -+ .|+....-...+-..|.+=.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl-ai-tfvs~e~da~iLn~vqdRf~ 369 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL-AI-TFVSDENDAKILNPVQDRFE 369 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc-ee-ehhcchhhHHHhchhhHhhh
Confidence 4478999999999999999999999999999999999999996653 22 23333333333444444433
No 229
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.89 E-value=1.5 Score=52.04 Aligned_cols=48 Identities=31% Similarity=0.620 Sum_probs=38.8
Q ss_pred cccccCCCCCC---cchhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000575 1094 AICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1143 (1413)
Q Consensus 1094 ~~C~iC~d~~~---~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1143 (1413)
..|.||.+.-+ .-.+.+|.|.|=..||..|+.....-||. |+......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 48999988643 34679999999999999999999888996 77655443
No 230
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=75.89 E-value=12 Score=48.00 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=37.0
Q ss_pred CCCCCCcccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 637 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 637 ~~P~g~l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
.+-+|.......|||++-+.-|.... +.--.+.=-.-+|||..++.+|.+
T Consensus 7 s~~pG~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 7 SAEPGPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCCCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 34456677889999999888886543 344677777799999988777754
No 231
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=74.79 E-value=1 Score=52.57 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=37.4
Q ss_pred cccccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000575 1094 AICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~-vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1141 (1413)
..|.+|..-..++ -++-|.|.||..||-+++.. .+.||. |...+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih 61 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIH 61 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceecc
Confidence 5799999887776 57889999999999999988 778996 655543
No 232
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.50 E-value=1.6 Score=53.09 Aligned_cols=47 Identities=34% Similarity=0.799 Sum_probs=38.6
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000575 1092 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1141 (1413)
+...|.+|......|+.++|||.||..||...+. ....||. |+..+.
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~--Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPL--CRDELV 129 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcc--cccccc
Confidence 3467999999999999999999999999888554 5567886 776664
No 233
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.45 E-value=1.9 Score=49.49 Aligned_cols=48 Identities=27% Similarity=0.764 Sum_probs=37.2
Q ss_pred ccccCCC-----CCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccccc
Q 000575 1095 ICGICND-----PPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1095 ~C~iC~d-----~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1144 (1413)
.|+.|.- |.-...+.+|+|.+|..|+......+...|| .|.+.+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhcc
Confidence 4777743 2222345699999999999999999999999 7988877654
No 234
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=72.41 E-value=2.1 Score=46.13 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.7
Q ss_pred cccCCCEEEEechhhhc
Q 000575 802 ELAKFDVVITTYSIVSM 818 (1413)
Q Consensus 802 ~L~~yDVVITTY~~l~~ 818 (1413)
....+||||.+|..+-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34578999999998863
No 235
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=72.36 E-value=20 Score=45.93 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.7
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-------ccC-cEEEEecccCCCchHHHHHh
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 935 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L-------~ak-~RwlLTGTPiqN~l~DLysl 935 (1413)
++..||||||| .+|..+..+..| +.. +.+++|||-=...+.+++.-
T Consensus 163 kYsvIIlDEAH----ERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAH----ERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechh----hhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 46789999999 344444443333 333 67889999765566665544
No 236
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.36 E-value=1.8 Score=50.35 Aligned_cols=34 Identities=35% Similarity=0.740 Sum_probs=31.4
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccC
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTAD 1127 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~ 1127 (1413)
..|+||.-.+..+++++|+|--|..||..++.+.
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~ 456 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC 456 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcC
Confidence 5699999999999999999999999999998754
No 237
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=71.48 E-value=30 Score=46.45 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.6
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~ 690 (1413)
.||+-+.|.|||-+.=-+++
T Consensus 68 vii~getGsGKTTqlP~~ll 87 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLL 87 (845)
T ss_pred EEEeCCCCCChHHHHHHHHH
Confidence 79999999999988755554
No 238
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=71.21 E-value=16 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.9
Q ss_pred ccEEEecCCCchHHHHHHHHH
Q 000575 670 GGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 670 GGILADEMGLGKTl~aIALI~ 690 (1413)
-.|+|-+.|.|||-|.=-++.
T Consensus 273 vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred eEEEecCCCCCccccchHHHH
Confidence 479999999999999866664
No 239
>PHA02533 17 large terminase protein; Provisional
Probab=70.90 E-value=40 Score=43.20 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.6
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 643 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 643 l~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
..++|.|+|+.-+.+|..+ +=.++.=-=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHHH
Confidence 4577999999999887421 11244444589999888665543
No 240
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.81 E-value=4.4 Score=50.79 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHH
Q 000575 647 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 689 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI 689 (1413)
..|-|++++-.|+++. -++-|--.|-|||+.-+.=|
T Consensus 159 Pt~iq~~aipvfl~~r-------~~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 159 PTPIQKQAIPVFLEKR-------DVLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred CCcccchhhhhhhccc-------ceEEeccCCCcchhhhhhHH
Confidence 3568999999999653 37888899999987654444
No 241
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.53 E-value=2.4 Score=48.79 Aligned_cols=40 Identities=30% Similarity=0.609 Sum_probs=33.1
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCC
Q 000575 1092 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1132 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp 1132 (1413)
..+.|.||-..-..||++.|+|.||..|-...+.... .|+
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~ 279 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCY 279 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCC-cce
Confidence 3467999999999999999999999999988776543 344
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=69.15 E-value=77 Score=36.55 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.6
Q ss_pred cEEEecCCCchHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALI 689 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI 689 (1413)
-||.=..|.|||..|-++.
T Consensus 45 vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILG 63 (261)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999998885554
No 243
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.05 E-value=2.7 Score=36.70 Aligned_cols=44 Identities=27% Similarity=0.674 Sum_probs=32.1
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1142 (1413)
..|-.|.......++.+|||+.|..|..-.-. +.||. |..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---ngCPf--C~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---NGCPF--CGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhhc---cCCCC--CCCcccC
Confidence 45677777777788999999999999865443 45774 6666543
No 244
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=68.07 E-value=34 Score=45.72 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=30.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~ 690 (1413)
..|-.-|+.|+...+.-+.- .|+--.+|.|||-++.+||-
T Consensus 668 ~~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIk 707 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIK 707 (1100)
T ss_pred hhcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHH
Confidence 35778999999888765542 45666789999988877763
No 245
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=67.74 E-value=21 Score=45.82 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=82.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc------CC--cEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCcc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS------SI--QYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMV 1327 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~------gI--~~~rldGsms~~qR~~aI~~Fn~d~-~i~VLL~StkaGg~GLNLq 1327 (1413)
+..-+|||=.-..-++.+...|.+. ++ -++-++|+++.++..++ |...| +.|=.|+||..+...|...
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 5568999988887777777777553 12 24678999998776555 77654 5666666989998888887
Q ss_pred ccCEEEE----EcCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000575 1328 AACHVLL----LDLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1371 (1413)
Q Consensus 1328 ~An~VI~----lDp~WNP~-----------~e~QAiGRvhRIGQtr~V~V~rLi~kdTI 1371 (1413)
.-.+||= ---.|||. .-.||.-|++|-|.+.+..+|||.++.-.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 7666641 11235653 56789999999999999999999998766
No 246
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=66.23 E-value=3.1 Score=51.01 Aligned_cols=45 Identities=38% Similarity=0.962 Sum_probs=37.8
Q ss_pred cccccCCCCCCcchhc-ccCcccchhhhhhhhccCCCCCCCcccccccc
Q 000575 1094 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit-~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1141 (1413)
-.|++|..+..+|+.+ .|||.||..|+.+++.. ...||. |...+.
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~--~~~~~~ 67 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV--CRQELT 67 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc--cccccc
Confidence 4699999999999985 99999999999999988 777885 544443
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=63.92 E-value=5.5 Score=40.12 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.4
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEeccc
Q 000575 888 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 924 (1413)
Q Consensus 888 ~rVIlDEAH~IKN~~T~~skal~~L--~ak~RwlLTGTP 924 (1413)
..|||||+|++. +......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999983 23444555555 677789999999
No 248
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=62.40 E-value=32 Score=45.18 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 000575 650 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 729 (1413)
Q Consensus 650 hQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~ 729 (1413)
.|-.++.-+.+.-.... +.-+|---.|.|||+++..++...
T Consensus 13 ~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~------------------------------------- 53 (655)
T TIGR00631 13 DQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV------------------------------------- 53 (655)
T ss_pred HHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh-------------------------------------
Confidence 78888888776543221 123577778999999997776431
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcC
Q 000575 730 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTS 782 (1413)
Q Consensus 730 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~ 782 (1413)
.+|+|||+|.. +..||.+|++.+++.
T Consensus 54 ---------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 ---------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred ---------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 13699999986 558999999999873
No 249
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.56 E-value=1e+02 Score=40.50 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
+|..+||||+|++-.. .....++.| ....+++|+.|=...-+.-+.+-...+...++
T Consensus 118 k~KV~IIDEVh~LS~~--A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpL 177 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH--SFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPL 177 (702)
T ss_pred CcEEEEEechHhcCHH--HHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCC
Confidence 4668999999999542 222233333 34457777776544444444444444444444
No 250
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=61.26 E-value=1.2e+02 Score=36.33 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=35.1
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 692 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~ 692 (1413)
..+||+|......+.+.......+.+-++.-..|+||+..|.+++...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 458999998887766654433233456788899999999998887553
No 251
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=59.02 E-value=4.6 Score=47.47 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHH
Q 000575 647 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~ 690 (1413)
.||.|+.-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666555544322 2367777899999999876654
No 252
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=59.02 E-value=4.6 Score=47.47 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHH
Q 000575 647 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~ 690 (1413)
.||.|+.-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666555544322 2367777899999999876654
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.87 E-value=1.3e+02 Score=38.42 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=32.4
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
+|.++||||+|++... .....++.| ....+++|..|-.+.-+.-+.+-...+...++
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 4678999999999642 222233333 34556777666555555445544444443444
No 254
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=58.60 E-value=2.2e+02 Score=39.27 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHHHH-hhccCCCCCccEEEecCCCchHHHHHHHH
Q 000575 646 PLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALI 689 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~-rE~~~~~~~GGILADEMGLGKTl~aIALI 689 (1413)
+=+.+|-.|+.-... +++....+.=|+-.-.+|.|||+.=.-++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm 452 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM 452 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH
Confidence 346799999876655 33333333337778889999999774444
No 255
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.58 E-value=3.7 Score=52.22 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCC-----HHHHHHHHHHHhcC---CCccEEEeec--cccccccCcc
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS-----VFARDKAVKDFNTL---PEVSVMIMSL--KAASLGLNMV 1327 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms-----~~qR~~aI~~Fn~d---~~i~VLL~St--kaGg~GLNLq 1327 (1413)
+.-||+|-..-..|..+....+..||- .++.|.-+ ..--.++++.|... +. -.||++. .-.++|||+.
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~-GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGR-GAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCC-CeEEEEEeccccccccccc
Confidence 367899999999999999999988763 22222211 01135667777542 22 2344342 3456999998
Q ss_pred c--cCEEEEEcCCCC
Q 000575 1328 A--ACHVLLLDLWWN 1340 (1413)
Q Consensus 1328 ~--An~VI~lDp~WN 1340 (1413)
. +..|+++.+|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 4 566888887774
No 256
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.33 E-value=1.2e+02 Score=38.33 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=28.1
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhh
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYF 936 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL 936 (1413)
+|..+||||||++... .....++.| ...-+++|+.|-...=+.-|.+-.
T Consensus 121 ~~KV~IIDEah~Ls~~--A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ--SFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred CCEEEEEechhhcCHH--HHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 4678999999999542 223334444 244556666665443334455543
No 257
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=4.4 Score=47.98 Aligned_cols=46 Identities=30% Similarity=0.653 Sum_probs=37.7
Q ss_pred ccccccCCCCCCcchhcccCccc-chhhhhhhhccCCCCCCCcccccccc
Q 000575 1093 LAICGICNDPPEDAVVSICGHVF-CNQCICERLTADDNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~vit~CgHif-C~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1141 (1413)
-..|.||+..+.+.++.+|.|+- |..|..... -..+.||. |+..+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPI--CRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPI--CRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCc--cccchH
Confidence 46799999999999999999986 999987765 45567885 877653
No 258
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=55.83 E-value=4.7 Score=47.03 Aligned_cols=47 Identities=23% Similarity=0.656 Sum_probs=37.7
Q ss_pred hccccccCCCCCCcc-hhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000575 1092 SLAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1139 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~-vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~ 1139 (1413)
....|++|...-.++ ++..-|-+||..|+..++. ..+.||..+|...
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 346799998776554 6777899999999999998 6678998777654
No 259
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=5.6 Score=47.62 Aligned_cols=45 Identities=31% Similarity=0.832 Sum_probs=32.3
Q ss_pred ccccccCCCCCCcc--------hhcccCcccchhhhhhhhccC------CCCCCCcccccc
Q 000575 1093 LAICGICNDPPEDA--------VVSICGHVFCNQCICERLTAD------DNQCPTRNCKIR 1139 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~~--------vit~CgHifC~~Ci~~~l~~~------~~~Cp~~~C~~~ 1139 (1413)
...|+||.+..... ++.+|.|.||..||..|-... ...||- |++.
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~--CRv~ 219 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPF--CRVP 219 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCc--ccCc
Confidence 36799998864332 347899999999999998433 346874 6554
No 260
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.43 E-value=5.5 Score=44.93 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=30.3
Q ss_pred cccccCCCCCC-cc-hhcccCcccchhhhhhhhccCCCCCCCcccccccccc
Q 000575 1094 AICGICNDPPE-DA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1143 (1413)
Q Consensus 1094 ~~C~iC~d~~~-~~-vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1143 (1413)
..|..|..-+. ++ .+|.|+|+||..|..-.... .||. |+..+...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~l--Ckk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCPL--CKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc---cccc--ccceeeee
Confidence 46888875443 33 57999999999998544332 6774 77665443
No 261
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=54.90 E-value=35 Score=38.79 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
+-||+-|.+-+..|.+-. ...+.++=--||-|||-.++=+++.
T Consensus 22 iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~ 64 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLAL 64 (229)
T ss_pred ceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHH
Confidence 448999999999998632 2255788899999999766555443
No 262
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.46 E-value=6.2 Score=44.23 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.6
Q ss_pred cccccCCCCCCcchhcccCcccchhhhhhhhc
Q 000575 1094 AICGICNDPPEDAVVSICGHVFCNQCICERLT 1125 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~ 1125 (1413)
.-|..|..|..+|++++-||+||++||.+++.
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 56999999999999999999999999999864
No 263
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.64 E-value=1.6e+02 Score=39.98 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=31.0
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
+|.++||||||++.. ......++.| ....+++|..|-...=+.-|.+-...++..++
T Consensus 119 k~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpL 178 (944)
T PRK14949 119 RFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSL 178 (944)
T ss_pred CcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCC
Confidence 477899999999953 2222334444 35567777755444333333433333333344
No 264
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=50.97 E-value=28 Score=46.82 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-------CCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVA 1328 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~d~-~i~VLL~StkaGg~GLNLq~ 1328 (1413)
...-||||-.-..-+..+...|+.+ .+-...++++|+..+.+++ |+..| +++=+|++|..+...|..-.
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccC
Confidence 3568999999888888888888642 2557789999998777666 77754 34445558899988888877
Q ss_pred cCEEE--------EEcCC---------C-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000575 1329 ACHVL--------LLDLW---------W-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1371 (1413)
Q Consensus 1329 An~VI--------~lDp~---------W-NP~~e~QAiGRvhRIGQtr~V~V~rLi~kdTI 1371 (1413)
.-+|| .|||. | .-+.-.||.||++| .++=..|+|+++.-.
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRY 546 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhh
Confidence 66665 34443 2 33344577777776 566678888876433
No 265
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=50.21 E-value=29 Score=44.50 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccccCccccCEEEEEc----C
Q 000575 1269 KMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLD----L 1337 (1413)
Q Consensus 1269 ~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~-d~~i~VLL~StkaGg~GLNLq~An~VI~lD----p 1337 (1413)
.+.+.|...|.+. ++.++-|+..++.+-..++ |+. .++++=.|++|..+...|....-.+||=.. -
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 3566666666542 6778888888887655554 773 456777777889999988888776665321 1
Q ss_pred CCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000575 1338 WWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1377 (1413)
Q Consensus 1338 ~WNP~-----------~e~QAiGRvhRIGQtr~V~V~rLi~kdTIEErIl~ 1377 (1413)
.+||. .-+||--|++|-|.+.|-+.|||+++++..+.|+.
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 24443 44577777888888999999999999988776654
No 266
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=50.08 E-value=1e+02 Score=40.31 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=26.6
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCC
Q 000575 758 AGTLVVCPTS-VLRQWAEELRNKV-T-SKGSLSVLVYHGSSRT 797 (1413)
Q Consensus 758 ~~TLIVcP~S-LL~QW~~EI~k~~-~-~~~~L~Vlvy~G~~r~ 797 (1413)
+++||.+|+. |..|+.+++.... . ....+++.+..|...-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nY 89 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEF 89 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccc
Confidence 3589999985 6689998876543 1 1235677777776543
No 267
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=48.79 E-value=1.5e+02 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.6
Q ss_pred EEEEcCCcccCChh---hHHHHHHHhc-ccCcEEEEecccCC
Q 000575 889 RVVLDEAQSIKNHR---TQVARACWGL-RAKRRWCLSGTPIQ 926 (1413)
Q Consensus 889 rVIlDEAH~IKN~~---T~~skal~~L-~ak~RwlLTGTPiq 926 (1413)
.|||||+|.+.... ......+..+ ....++++|+|+..
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 59999999986532 2333333333 23457888888543
No 268
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.11 E-value=43 Score=38.17 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=43.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-ccccc-CCCEEEEechhhhc
Q 000575 759 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCELA-KFDVVITTYSIVSM 818 (1413)
Q Consensus 759 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~-~~~L~-~yDVVITTY~~l~~ 818 (1413)
.+||+|-+. |..|-.+|..++-.--+..++.+|.|.-..+. .+.+. -..||+-|-..+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA 174 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA 174 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH
Confidence 479999886 77899999887765556899999999876553 33333 34588888776653
No 269
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.83 E-value=27 Score=42.58 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=65.2
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCccccc-CCCEEEEechhhhcccCCCCCCCchhHHHHh
Q 000575 759 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSV-LVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 835 (1413)
Q Consensus 759 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~V-lvy~G~~r~k~~~~L~-~yDVVITTY~~l~~e~~k~~~~~~~de~~k~ 835 (1413)
..||+.|.. |..|-.+=++..-.. -.++. +.|+|..-.+....+. +-||||.|-..+..-.. +
T Consensus 92 RalilsptreLa~qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v------------e- 157 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV------------E- 157 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccc-cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh------------h-
Confidence 479999997 555554444333221 13444 4677766555444554 78999998776642100 0
Q ss_pred hhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCCcccCC--hhhHHHHHHHhcc
Q 000575 836 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR 913 (1413)
Q Consensus 836 ~~~~~~~~~~~~~~~~k~k~~~~~~r~~~~~kk~~~~~~~~~~~~pL~~i~W~rVIlDEAH~IKN--~~T~~skal~~L~ 913 (1413)
+.-.|.. ..+||+|||..|-. ..-+..+.+.+|.
T Consensus 158 ------------------------------------------m~l~l~s--veyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 158 ------------------------------------------MTLTLSS--VEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred ------------------------------------------eeccccc--eeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 0001222 34699999999843 4566777778884
Q ss_pred -cCcEEEEeccc
Q 000575 914 -AKRRWCLSGTP 924 (1413)
Q Consensus 914 -ak~RwlLTGTP 924 (1413)
....+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 34679999994
No 270
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.59 E-value=1.5e+02 Score=37.54 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 648 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 648 ~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
.+|-...+..++.... .+.+-||.-..|.|||..|-+++..
T Consensus 19 q~~i~~~L~~~i~~~~---l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 19 QDHVKKLIINALKKNS---ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred cHHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555554332 1233489999999999888766543
No 271
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=47.32 E-value=12 Score=49.33 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=23.8
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCcc-EEEe-cCCCchHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGG-ILAD-DQGLGKTISTI 686 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GG-ILAD-EMGLGKTl~aI 686 (1413)
..-|+-|.+-+..+.+-........++ +++. .+|.|||+--|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 357889988665555433321000122 3344 69999998754
No 272
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.19 E-value=2.7e+02 Score=33.93 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.1
Q ss_pred cEEEecCCCchHHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~~ 691 (1413)
-||.-+.|+|||..+.+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 489999999999888777643
No 273
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=9.9 Score=45.71 Aligned_cols=46 Identities=26% Similarity=0.632 Sum_probs=35.0
Q ss_pred hccccccCCCCC--C-cchhcccCcccchhhhhhhhccCC--CCCCCcccccc
Q 000575 1092 SLAICGICNDPP--E-DAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIR 1139 (1413)
Q Consensus 1092 ~~~~C~iC~d~~--~-~~vit~CgHifC~~Ci~~~l~~~~--~~Cp~~~C~~~ 1139 (1413)
+.++|++--+-. + .|+...|||++|.+.+.....+.. .+||. |...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCcc
Confidence 457899875532 2 267889999999999999888776 78886 6544
No 274
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.58 E-value=8.1 Score=45.89 Aligned_cols=43 Identities=40% Similarity=0.912 Sum_probs=32.1
Q ss_pred hccccccCCCCCCcchhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000575 1092 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
....|.+|.+.+.+.+..+|||+-| |........ +||. |+..+
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l~--~CPv--CR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHLP--QCPV--CRQRI 346 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhCC--CCch--hHHHH
Confidence 3467999999999999999999987 655443322 3884 77654
No 275
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=46.20 E-value=51 Score=44.11 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=31.6
Q ss_pred EEEEeChhhHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000575 760 TLVVCPTSVLRQW-AEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 817 (1413)
Q Consensus 760 TLIVcP~SLL~QW-~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~l~ 817 (1413)
.|.+.|--.+-|= ..++..+. .+..+.|-.|.|.. .......+-++.|.|.+.-.
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~~-~~~G~~ve~y~g~~--~p~~~~k~~sv~i~tiEkan 327 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPFS-IDLGFPVEEYAGRF--PPEKRRKRESVAIATIEKAN 327 (1008)
T ss_pred eeEecceeehhHHHHhhhhhhc-cccCCcchhhcccC--CCCCcccceeeeeeehHhhH
Confidence 5777776544443 34444343 34567777787543 33334455668888876554
No 276
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=45.66 E-value=10 Score=43.83 Aligned_cols=43 Identities=33% Similarity=0.750 Sum_probs=29.8
Q ss_pred ccccccCCCCCCc-chhcccCcccchhhhhhhhccCCCCCCCccccccc
Q 000575 1093 LAICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1140 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~-~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l 1140 (1413)
..-|.-|..+..- ..+.+|.|+||.+|-...- +..||. |..++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~--C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPL--CDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCc---cccCcC--cccHH
Confidence 4669999877543 4578999999999975432 456773 65443
No 277
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.93 E-value=2.7e+02 Score=32.77 Aligned_cols=39 Identities=5% Similarity=0.063 Sum_probs=23.2
Q ss_pred cEEEEcCCcccCChhh--HHHHHHHhcccCcEEEEecccCC
Q 000575 888 FRVVLDEAQSIKNHRT--QVARACWGLRAKRRWCLSGTPIQ 926 (1413)
Q Consensus 888 ~rVIlDEAH~IKN~~T--~~skal~~L~ak~RwlLTGTPiq 926 (1413)
..|||||+|.+..... .....+.......++++|++...
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 4699999999843221 12222333345667888886543
No 278
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.89 E-value=3e+02 Score=36.57 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=33.3
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 886 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
++.+|||||+|.+... .....++.| ....+++|+.|=...-+.-+.+-+..+...++
T Consensus 119 k~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~L 178 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM 178 (709)
T ss_pred CcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCC
Confidence 4678999999998542 222334444 34557777777555555555554443433333
No 279
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=44.56 E-value=2.5e+02 Score=37.04 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred cCCCCcEEEEE--EEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000575 1354 IGQTRPVSVLR--LTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1354 IGQtr~V~V~r--Li~kdTIEErIl~lq~~K~~l~~~~lg~d~~~~~~~~lt~~dL~~LF~ 1412 (1413)
+|+.-.+.|.. =....|--++-.+..+.|++.+...+-.|. .++.|...|+
T Consensus 584 ~g~~~~l~i~~~~~~~~~tp~~~~~~~~~~~~~~a~~~~~~Dp--------~v~~l~~~f~ 636 (647)
T PRK07994 584 LGRTVELTIEEDDNPAVETPLEWRQRIYEEKLAQAEESIIADP--------NIQTLRQFFD 636 (647)
T ss_pred hCCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHHHHHHHhCH--------HHHHHHHHcC
Confidence 57776666653 122346666666666677777777776654 3666666665
No 280
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=43.19 E-value=51 Score=44.30 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=80.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEE
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~i-~VLL~StkaGg~GLNLq~An~V 1332 (1413)
..-+|||-.=..-++-....|.+ ..+.++-++|.++.++-.+ -|+..+.- +=+|+||..+-.+|.......|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 35689999888888888888876 4577899999999888777 57776554 4245589999999998887766
Q ss_pred EEE----cCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000575 1333 LLL----DLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1372 (1413)
Q Consensus 1333 I~l----Dp~WNP~-----------~e~QAiGRvhRIGQtr~V~V~rLi~kdTIE 1372 (1413)
|=- .+-|||. .-+.|.-|++|-|.+.+=..|||+.++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 521 1224443 223455666666668888999999986655
No 281
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.99 E-value=47 Score=38.98 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.8
Q ss_pred ccEEEecCCCchHHHHHHHHH
Q 000575 670 GGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 670 GGILADEMGLGKTl~aIALI~ 690 (1413)
+-+|--+.|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467888999999998866653
No 282
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=42.38 E-value=28 Score=46.38 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=65.4
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-----CCcChHHHHHHhhhccCC-CC
Q 000575 1285 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-----WNPTTEDQAIDRAHRIGQ-TR 1358 (1413)
Q Consensus 1285 ~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~-----WNP~~e~QAiGRvhRIGQ-tr 1358 (1413)
+...+.+.+.++|.-+=..|++ +.++|++.+ ...+.|+||.+ .+||+=-|. -.-....|.+||+.|.|= |.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~-g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE-GNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHh-cCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 3446677778888877778887 888888855 55899999985 555554333 234467799999999983 33
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000575 1359 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1395 (1413)
Q Consensus 1359 ~V~V~rLi~kdTIEErIl~lq~~K~~l~~~~lg~d~~ 1395 (1413)
.--+ |+++..=..++.++...-......-++++..
T Consensus 602 Gdsi--LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~ 636 (1008)
T KOG0950|consen 602 GDSI--LIIKSSEKKRVRELVNSPLKPLNSCLSNEVN 636 (1008)
T ss_pred cceE--EEeeccchhHHHHHHhccccccccccccccc
Confidence 3222 3444433344445544444444444444433
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.74 E-value=9.7 Score=45.72 Aligned_cols=56 Identities=32% Similarity=0.606 Sum_probs=40.2
Q ss_pred cccccCCCCCCc-----chhcccCcccchhhhhhhhcc-CCCCCCCccccccccccchhhhhhc
Q 000575 1094 AICGICNDPPED-----AVVSICGHVFCNQCICERLTA-DDNQCPTRNCKIRLSLSSVFSKATL 1151 (1413)
Q Consensus 1094 ~~C~iC~d~~~~-----~vit~CgHifC~~Ci~~~l~~-~~~~Cp~~~C~~~l~~~~v~~~~~l 1151 (1413)
..|++|.+.-+. .+...|||.|-.+||+.|+.. ...+||. |+..-....++....+
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~--c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPL--CSGKATKRQIRPEYAL 66 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcc--cCChhHHHHHHHHHHH
Confidence 579999986443 356789999999999999952 2236875 8877666666654433
No 284
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=41.54 E-value=4.7e+02 Score=27.93 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcC
Q 000575 651 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 693 (1413)
Q Consensus 651 Q~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r 693 (1413)
|...+..+.+.-.....+..-|+.-.-|.||+-.+.+++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444444444333322223347888889999999999986543
No 285
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=41.26 E-value=1.1e+02 Score=32.15 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=56.6
Q ss_pred eEEEEcccHHHHHHHHHHHHhcCCcE--EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000575 1260 KAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1337 (1413)
Q Consensus 1260 KvIIFSq~t~~LdlLe~~L~~~gI~~--~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp 1337 (1413)
.|=++||.-.+...|-..+...|+.+ +.=.|....-.-.+.++.|.+||+.+|+++- +|.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999999998886665 4446665555677899999999999999866 555
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000575 1338 WWNPTTEDQAIDRAHRIGQTRPVSVLRL 1365 (1413)
Q Consensus 1338 ~WNP~~e~QAiGRvhRIGQtr~V~V~rL 1365 (1413)
-=||....++.-|+.| +|||.+++-
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE-
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeC
Confidence 5578888888888876 388888653
No 286
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=40.54 E-value=40 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=34.6
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcC-CCCcEEEEEeCC-CCCC-CcccccCCCEEEEechhhhcc
Q 000575 760 TLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGS-SRTK-DPCELAKFDVVITTYSIVSME 819 (1413)
Q Consensus 760 TLIVcP~S-LL~QW~~EI~k~~~~-~~~L~Vlvy~G~-~r~k-~~~~L~~yDVVITTY~~l~~e 819 (1413)
.+|+||+- |..|-...|.+.... ...++++-...+ +... ...-....||||+|-..+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 69999987 778888888765431 113333333211 1111 122234678999998887643
No 287
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=39.99 E-value=1.3e+02 Score=39.80 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=50.9
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 724 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 724 (1413)
..|.++|..++.-+.+.-.... +..+|---.|.|||+.+.+++...
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~~-------------------------------- 56 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIARL-------------------------------- 56 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 4678899999988776543221 124566677999999876655220
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc
Q 000575 725 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 781 (1413)
Q Consensus 725 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~ 781 (1413)
.+++|||+|.. ...||.+++..+++
T Consensus 57 --------------------------------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 57 --------------------------------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 13589999996 66899999998886
No 288
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=12 Score=45.69 Aligned_cols=45 Identities=27% Similarity=0.699 Sum_probs=34.3
Q ss_pred ccccccCCCCCC-----------------cchhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000575 1093 LAICGICNDPPE-----------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1139 (1413)
Q Consensus 1093 ~~~C~iC~d~~~-----------------~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~ 1139 (1413)
...|.||..+.+ .-.+++|.|+|-.+|+..|+..-.-.||. |+..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPv--CR~p 632 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPV--CRCP 632 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCc--cCCC
Confidence 367999986531 12468999999999999999877778986 5543
No 289
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=39.26 E-value=53 Score=41.58 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHHhhc-----cCCCCCccEEEecCCCchHHHHHHHHH
Q 000575 647 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~-----~~~~~~GGILADEMGLGKTl~aIALI~ 690 (1413)
.....++++.|.+.+-. ....++|.||.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45677888888887655 233567899999999999999877764
No 290
>PF04641 Rtf2: Rtf2 RING-finger
Probab=39.16 E-value=20 Score=41.63 Aligned_cols=51 Identities=20% Similarity=0.461 Sum_probs=36.3
Q ss_pred hccccccCCCCCCc---c-hhcccCcccchhhhhhhhccCCCCCCCccccccccccchh
Q 000575 1092 SLAICGICNDPPED---A-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1146 (1413)
Q Consensus 1092 ~~~~C~iC~d~~~~---~-vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~v~ 1146 (1413)
...+|+++...... . .+-+|||+|+..|+.+.- ....||. |...+....++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~--c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPV--CGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccc--cCCccccCCEE
Confidence 34789999877632 2 356899999999999984 4556884 77776544433
No 291
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=39.11 E-value=93 Score=29.81 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Q 000575 1257 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVK 1302 (1413)
Q Consensus 1257 ~~~KvIIFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~ 1302 (1413)
...+|+||+. |-..-..+.+.|+..|+.|..++=....+.|+.+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 4689999987 566788889999999999988875555444444433
No 292
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=38.78 E-value=92 Score=30.45 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=41.3
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEE
Q 000575 1257 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1314 (1413)
Q Consensus 1257 ~~~KvIIFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL 1314 (1413)
...+|+||+. |=..-..+.+.|...|++|..++=....+.|+.+.+......-+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 5689999974 456677888899999999988876556666666655544433355555
No 293
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.25 E-value=1.7e+02 Score=38.89 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=57.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
.+.++||.+.-......+.+.|++ .|+....++|+++..+|.+...+... ++++|+|.+..+. =+.+..-..||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEE
Confidence 467899999999988888888876 48899999999999999888887776 6678888553332 2345555555554
Q ss_pred c
Q 000575 1336 D 1336 (1413)
Q Consensus 1336 D 1336 (1413)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 4
No 294
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=38.18 E-value=1.3e+02 Score=41.59 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=35.7
Q ss_pred CcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000575 758 AGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 817 (1413)
Q Consensus 758 ~~TLIVcP~SLL-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~l~ 817 (1413)
+...-+.|...+ .--...|.+.+.....+.+... |..+.-+...+.+.+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l-~ge~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL-TGETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhccccCceEEec-CCccccchHHhhhcceEEechhHHH
Confidence 346778888754 2222333344332234555444 4455566777889999999987764
No 295
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=37.89 E-value=25 Score=41.80 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=33.9
Q ss_pred hhhccccccCCCCCC-------------cchhcccCcccchhhhhhhhccCCCCCCCcccccc
Q 000575 1090 EASLAICGICNDPPE-------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1139 (1413)
Q Consensus 1090 e~~~~~C~iC~d~~~-------------~~vit~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~ 1139 (1413)
-.+...|.||.|... .|--.+|||++=..|+..|+.... .||. |+-.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPI--Cr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPI--CRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCc--ccCc
Confidence 345678999988632 124578999999999999986543 5774 6654
No 296
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.83 E-value=12 Score=42.55 Aligned_cols=52 Identities=33% Similarity=0.767 Sum_probs=38.5
Q ss_pred cccccCCCCC-----Ccch-----hcccCcccchhhhhhhh-ccCCCCCCCccccccccccchhh
Q 000575 1094 AICGICNDPP-----EDAV-----VSICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFS 1147 (1413)
Q Consensus 1094 ~~C~iC~d~~-----~~~v-----it~CgHifC~~Ci~~~l-~~~~~~Cp~~~C~~~l~~~~v~~ 1147 (1413)
..|.+|.... ++.+ -..|+|+|=.-||..|. .+....||. |+.++..+.+|+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY--CKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY--CKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch--HHHHhhHhhhcc
Confidence 5688887542 2223 36899999999999985 445668996 998888777774
No 297
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=37.70 E-value=2.3e+02 Score=38.43 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC-CCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT-MSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1323 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGs-ms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~G 1323 (1413)
.|..|||-+.....-+.|.+.|...||++..++.. ...++-.++|.+==. .-.|-| +|.-+|.|
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTI-ATNMAGRG 502 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR--KGAVTI-ATNMAGRG 502 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC--CCcEEE-eccCCCCC
Confidence 68899999999999999999999999999999987 343444455554211 123344 44555555
No 298
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.22 E-value=16 Score=41.14 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=30.4
Q ss_pred cccccCCCCCCc----chhcccCcccchhhhhhhhccCCCCCC
Q 000575 1094 AICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCP 1132 (1413)
Q Consensus 1094 ~~C~iC~d~~~~----~vit~CgHifC~~Ci~~~l~~~~~~Cp 1132 (1413)
.+|++|-+...+ +++.+|||++|.+|++.++..| ..||
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~p 263 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDP 263 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-cccc
Confidence 689999887655 4788999999999999887665 3455
No 299
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=36.89 E-value=28 Score=33.44 Aligned_cols=44 Identities=34% Similarity=0.762 Sum_probs=30.9
Q ss_pred cccCCCCCCc-c-hhcccCcccchhhhhhhhccC--CCCCCCcccccccc
Q 000575 1096 CGICNDPPED-A-VVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLS 1141 (1413)
Q Consensus 1096 C~iC~d~~~~-~-vit~CgHifC~~Ci~~~l~~~--~~~Cp~~~C~~~l~ 1141 (1413)
|+.|..|..+ | +.-.|+|.|-..||.+++... ...||. |+....
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm--CR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM--CRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCC--cCCeee
Confidence 4455444444 3 456799999999999999864 568885 766543
No 300
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=18 Score=44.27 Aligned_cols=53 Identities=38% Similarity=0.857 Sum_probs=38.4
Q ss_pred ccccccCC-CCCCc---chhcccCcccchhhhhhhhc-----cCCCCCCCccccccccccch
Q 000575 1093 LAICGICN-DPPED---AVVSICGHVFCNQCICERLT-----ADDNQCPTRNCKIRLSLSSV 1145 (1413)
Q Consensus 1093 ~~~C~iC~-d~~~~---~vit~CgHifC~~Ci~~~l~-----~~~~~Cp~~~C~~~l~~~~v 1145 (1413)
...|.+|. +.+.. ..+..|+|.||.+|+..++. .....||...|...+.....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 35799998 33322 23577999999999998875 34568999888887765443
No 301
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.58 E-value=1.7e+02 Score=37.43 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=55.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1335 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~l 1335 (1413)
.+.++||.+........+.+.|++. |.....++|.++..+|.++..+-.. ++.+|+|.+..+. =+-+.....||+=
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrsal--f~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRSAL--FLPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChHHH--cCcccCCCEEEEE
Confidence 4678999999998888888888764 7889999999999999888777665 6677877553332 2334445555554
Q ss_pred c
Q 000575 1336 D 1336 (1413)
Q Consensus 1336 D 1336 (1413)
|
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.14 E-value=4.5e+02 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 650 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 650 hQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
|=+.-+..++...+ ....-|+.-..|.|||..|..++..
T Consensus 23 ~v~~~L~~ai~~~r---i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 23 TVKAILSRAAQENR---VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHHHHHHcCC---CCceEEEECCCCCCHHHHHHHHHHh
Confidence 43444555554322 1234567899999999988777644
No 303
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=35.07 E-value=5e+02 Score=33.98 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.4
Q ss_pred CccEEEecCCCchHHHHHHHHHH
Q 000575 669 SGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 669 ~GGILADEMGLGKTl~aIALI~~ 691 (1413)
.+-|+.-..|.|||..|.+++..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999988877654
No 304
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.07 E-value=3.9e+02 Score=34.37 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 649 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 649 phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
+|-...+..++...+- ...-|+.-..|.|||..+..++..
T Consensus 22 ~~v~~~L~~~i~~~~~---~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 22 EHVVRALTNALEQQRL---HHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHHHHHHHHHHHcCCC---CEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455545443221 123478999999999877666543
No 305
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=35.04 E-value=2.6e+02 Score=38.05 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=32.6
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHc
Q 000575 644 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 692 (1413)
Q Consensus 644 ~~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~ 692 (1413)
+.|-+.++..-+..+.+..- -++.-|.|.|||.|.--+|+..
T Consensus 171 ~LPa~~~r~~Il~~i~~~qV-------vvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQV-------VVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred hCccHHHHHHHHHHHHhCce-------EEEeCCCCCCchhhhhHHHHHH
Confidence 45567788888877765432 5888999999999999999753
No 306
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.90 E-value=3.9e+02 Score=34.08 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHH
Q 000575 650 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 650 hQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~ 690 (1413)
|-...+..++...+ ....-||.-..|.|||-.|..+..
T Consensus 20 ~vv~~L~~a~~~~r---i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 20 VLVRILRNAFTLNK---IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHHHHHHHHcCC---CCceEEEECCCCccHHHHHHHHHH
Confidence 44444444443322 234578999999999987766553
No 307
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=13 Score=42.89 Aligned_cols=28 Identities=43% Similarity=1.045 Sum_probs=24.6
Q ss_pred cccccCCCCCCcchhcccCccc-chhhhh
Q 000575 1094 AICGICNDPPEDAVVSICGHVF-CNQCIC 1121 (1413)
Q Consensus 1094 ~~C~iC~d~~~~~vit~CgHif-C~~Ci~ 1121 (1413)
..|.||+|.|.+=++..|||.. |.+|=.
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGk 329 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGK 329 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcc
Confidence 4699999999999999999987 888753
No 308
>PF13173 AAA_14: AAA domain
Probab=34.43 E-value=42 Score=34.12 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=25.1
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCC
Q 000575 888 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 927 (1413)
Q Consensus 888 ~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN 927 (1413)
.+|||||+|++.+....... +..-..+.++++||.-...
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~-l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKF-LVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred cEEEEehhhhhccHHHHHHH-HHHhccCceEEEEccchHH
Confidence 46999999999864433222 2222245799999985443
No 309
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=34.28 E-value=2.4e+02 Score=37.80 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.5
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 689 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI 689 (1413)
..|-+-|+.|+.-++... +=.+|---.|.|||.++-+++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHH
Confidence 468899999999887421 125788889999998776655
No 310
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=33.73 E-value=1.4e+02 Score=26.97 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=39.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000575 1260 KAIVFS-QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1316 (1413)
Q Consensus 1260 KvIIFS-q~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~S 1316 (1413)
|+.||+ .+=..-..+.+.|++.+++|..++-....+.++++.+.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466776 444567788888999999999888887777777776666543244444444
No 311
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=33.63 E-value=1.2e+02 Score=40.21 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCeEEEEcccHHHHHHHHHH----HHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEAS----LKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~----L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V 1332 (1413)
.+.+++|.+.-...+..+... +...|+++..++|+++.++|...++...+ +++.|+|.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 567899999887776655554 44558999999999999999999998887 6788888765555555555554444
Q ss_pred EE
Q 000575 1333 LL 1334 (1413)
Q Consensus 1333 I~ 1334 (1413)
|+
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 43
No 312
>PHA03096 p28-like protein; Provisional
Probab=31.96 E-value=44 Score=39.30 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=27.2
Q ss_pred cccccCCCCCC--------cchhcccCcccchhhhhhhhccC
Q 000575 1094 AICGICNDPPE--------DAVVSICGHVFCNQCICERLTAD 1127 (1413)
Q Consensus 1094 ~~C~iC~d~~~--------~~vit~CgHifC~~Ci~~~l~~~ 1127 (1413)
.+|.+|++... ..+++.|.|.||..|+..|....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 78999998532 23678899999999999987653
No 313
>CHL00181 cbbX CbbX; Provisional
Probab=31.95 E-value=1.1e+02 Score=36.17 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~ 690 (1413)
-+|--..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999998877753
No 314
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.38 E-value=58 Score=43.24 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=33.7
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
+.||.|++....+.+--... ..+||=--+|.|||+.+|+..++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 46999999888777655432 34788888999999999877765
No 315
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=31.02 E-value=75 Score=37.43 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.1
Q ss_pred ccCCCEEEEechhhhc
Q 000575 803 LAKFDVVITTYSIVSM 818 (1413)
Q Consensus 803 L~~yDVVITTY~~l~~ 818 (1413)
+..+||||++|..+-.
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00488 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998853
No 316
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=31.02 E-value=75 Score=37.43 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.1
Q ss_pred ccCCCEEEEechhhhc
Q 000575 803 LAKFDVVITTYSIVSM 818 (1413)
Q Consensus 803 L~~yDVVITTY~~l~~ 818 (1413)
+..+||||++|..+-.
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00489 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998853
No 317
>PF13245 AAA_19: Part of AAA domain
Probab=30.96 E-value=1e+02 Score=28.88 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.0
Q ss_pred EEEecCCCchHHHHHHHHHH
Q 000575 672 ILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 672 ILADEMGLGKTl~aIALI~~ 691 (1413)
++---.|.|||-+++.++..
T Consensus 14 vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 44667899999888888865
No 318
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=30.09 E-value=88 Score=42.43 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=40.6
Q ss_pred CCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhh
Q 000575 757 AAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 816 (1413)
Q Consensus 757 ~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~l 816 (1413)
.+.+.+|.|.. |+.--.+.+.+....+ .+++.-..|..+. +.......+++|||.+..
T Consensus 973 ~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 973 GSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTP-DVKAVREADIVITTPEKW 1031 (1230)
T ss_pred CccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCC-ChhheecCceEEcccccc
Confidence 35689999974 5554444444444433 6888888887654 477888999999998765
No 319
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=29.90 E-value=7.5 Score=52.23 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=58.2
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCC
Q 000575 1261 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1340 (1413)
Q Consensus 1261 vIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~lDp~WN 1340 (1413)
+++|+-...+..++...+ ...+.+...+...++.+|... +....+.+|.+|..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~--------~~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFL--------VDHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhh--------hhHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 789999999999998864 111222222333333333331 35577889999998899999999999
Q ss_pred cChHHHHHHhhhccCCC
Q 000575 1341 PTTEDQAIDRAHRIGQT 1357 (1413)
Q Consensus 1341 P~~e~QAiGRvhRIGQt 1357 (1413)
| .+|+++|.|+++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999996
No 320
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.84 E-value=6.7e+02 Score=31.95 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=15.4
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~ 690 (1413)
-|+.-+.|.|||..+..+..
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36799999999887765553
No 321
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=28.95 E-value=46 Score=28.59 Aligned_cols=42 Identities=26% Similarity=0.788 Sum_probs=20.7
Q ss_pred cccCCCCCC--cchhc--ccCcccchhhhhhhhccCCCCCCCcccccc
Q 000575 1096 CGICNDPPE--DAVVS--ICGHVFCNQCICERLTADDNQCPTRNCKIR 1139 (1413)
Q Consensus 1096 C~iC~d~~~--~~vit--~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~ 1139 (1413)
|++|.+... +.-+. .|++-+|..|....+....+.||. |+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPg--Cr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPG--CREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TT--T--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCC--CCCC
Confidence 566766542 11233 589999999999999888889994 7653
No 322
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=28.08 E-value=3.3e+02 Score=32.75 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHc
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 692 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~ 692 (1413)
++||||.....-|+++.+- +..-++.-..|+|||..|.+++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~---~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRH---PHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCc---ceeeeeECCCCCCHHHHHHHHHHHH
Confidence 4699999999988877332 2445678899999999998887654
No 323
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=35 Score=42.75 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=40.0
Q ss_pred ccccccCCCCCCc-chhcccCcccchhhhhhhhccC----C---CCCCCccccccccccc
Q 000575 1093 LAICGICNDPPED-AVVSICGHVFCNQCICERLTAD----D---NQCPTRNCKIRLSLSS 1144 (1413)
Q Consensus 1093 ~~~C~iC~d~~~~-~vit~CgHifC~~Ci~~~l~~~----~---~~Cp~~~C~~~l~~~~ 1144 (1413)
...|.+|.+.... .+...|+|.||..|+..+++.. . .+||...|........
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 3679999887775 6677899999999999987652 1 3689988887765443
No 324
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=26.80 E-value=2e+02 Score=39.71 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=33.5
Q ss_pred ccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000575 1310 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1310 i~VLL~StkaGg~GLNLq~An~VI~lDp~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
..++|++|.+...|+++-. +.+| .||. .-....|+.||+.|-|+...
T Consensus 838 ~~~i~v~Tqv~E~g~D~df-d~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHDY-DWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCeEEEEeeeEEEEecccC-Ceee-eccC-cHHHHHHHhhcccccccCCC
Confidence 4567779999999999863 3333 3332 23567899999999998654
No 325
>PRK11054 helD DNA helicase IV; Provisional
Probab=26.78 E-value=1.1e+02 Score=40.42 Aligned_cols=38 Identities=32% Similarity=0.099 Sum_probs=27.4
Q ss_pred cCCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 645 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 645 ~~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
.+|-+-|+.||..-. . .-.|+|- .|.|||.++++-+++
T Consensus 195 ~~L~~~Q~~av~~~~----~----~~lV~ag-aGSGKT~vl~~r~ay 232 (684)
T PRK11054 195 SPLNPSQARAVVNGE----D----SLLVLAG-AGSGKTSVLVARAGW 232 (684)
T ss_pred CCCCHHHHHHHhCCC----C----CeEEEEe-CCCCHHHHHHHHHHH
Confidence 469999999996432 1 1135554 799999999888765
No 326
>PLN03025 replication factor C subunit; Provisional
Probab=26.73 E-value=1.1e+02 Score=36.33 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=35.1
Q ss_pred CccEEEEcCCcccCChhhH-HHHHHHhcccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 886 GWFRVVLDEAQSIKNHRTQ-VARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 886 ~W~rVIlDEAH~IKN~~T~-~skal~~L~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
.|..|||||+|.+-..... ..+.+.......+++|+.++...-+..|-+-...++..++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 4789999999998543211 1122222245567888888766555566655544444444
No 327
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.69 E-value=1.6e+02 Score=27.70 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=29.6
Q ss_pred EEEEeChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEech
Q 000575 760 TLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 814 (1413)
Q Consensus 760 TLIVcP~SL-L-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~ 814 (1413)
.|||||... . ..-+..++++++..+.. ..+-...-. .....++|+||||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~-~~~~~~~~~---~~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIE-AEVEHTDLG---SAKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCc-EEEEEeccc---ccCCCCCCEEEEchh
Confidence 699999965 3 33445788877633322 222221111 112568999999975
No 328
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=26.63 E-value=1.6e+02 Score=38.58 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1332 (1413)
Q Consensus 1257 ~~~KvIIFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~V 1332 (1413)
.+.+++|-+.-...+..+.+.++ ..|+++..++|+++.++|...++...+ +++.|+|.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 46788888888777666555544 458999999999999999999888876 6778888665544444555444444
Q ss_pred E
Q 000575 1333 L 1333 (1413)
Q Consensus 1333 I 1333 (1413)
|
T Consensus 362 V 362 (630)
T TIGR00643 362 I 362 (630)
T ss_pred E
Confidence 3
No 329
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=26.39 E-value=2.3e+02 Score=35.64 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=22.4
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecc
Q 000575 887 WFRVVLDEAQSIKNHRT---QVARACWGL-RAKRRWCLSGT 923 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~~T---~~skal~~L-~ak~RwlLTGT 923 (1413)
.++|||||+|.+.+... ..+..+..+ .....+++|+.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 46799999999976432 233333333 33446888853
No 330
>PHA00673 acetyltransferase domain containing protein
Probab=26.03 E-value=1e+02 Score=32.97 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.7
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCchH
Q 000575 887 WFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 930 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPiqN~l~ 930 (1413)
.+-|.+++.|+=+...+++.+.+... +.-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45699999999888887777766544 567899999999999865
No 331
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=25.83 E-value=1.3e+02 Score=28.56 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=32.3
Q ss_pred cEEEEeChhhH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000575 759 GTLVVCPTSVL--RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 815 (1413)
Q Consensus 759 ~TLIVcP~SLL--~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~ 815 (1413)
..|||||...- ..-+..++++++.. .+.+.+-+.+...-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 37999999753 35677788887632 3333332222111111 35689999999754
No 332
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=25.81 E-value=1.3e+02 Score=34.73 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHH
Q 000575 647 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 691 (1413)
Q Consensus 647 L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~ 691 (1413)
|-+-|+.++.+ .. ++. -|.|= .|.|||.+++.-++.
T Consensus 1 l~~eQ~~~i~~-~~---~~~----lV~a~-AGSGKT~~l~~ri~~ 36 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE---GPL----LVNAG-AGSGKTTTLLERIAY 36 (315)
T ss_dssp S-HHHHHHHHS--S---SEE----EEEE--TTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CC---CCE----EEEeC-CCCCchHHHHHHHHH
Confidence 45678888887 31 111 24444 799999999887754
No 333
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.24 E-value=55 Score=40.68 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=36.9
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhc-------cc-CcEEEEecccCCCchHHHHHhhhhcc
Q 000575 885 VGWFRVVLDEAQSIKNHRTQVARACWGL-------RA-KRRWCLSGTPIQNAIDDLYSYFRFLR 940 (1413)
Q Consensus 885 i~W~rVIlDEAH~IKN~~T~~skal~~L-------~a-k~RwlLTGTPiqN~l~DLyslL~FL~ 940 (1413)
-.|..+|+|||| .+|..+..+..| +. -+.+.+|+|-...++...|+-.-++.
T Consensus 158 ~~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~ 217 (699)
T KOG0925|consen 158 GRYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLA 217 (699)
T ss_pred ccccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeee
Confidence 469999999999 456666655554 22 35688999988878777776555554
No 334
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=24.96 E-value=8.5e+02 Score=31.61 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.2
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~ 690 (1413)
-|+.-..|.|||..+-.+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46799999999998866653
No 335
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.83 E-value=16 Score=46.94 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=26.9
Q ss_pred cccCCCCCCcch---hcccCcccchhhhhhhhccCCCCCCCccccccccc
Q 000575 1096 CGICNDPPEDAV---VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1142 (1413)
Q Consensus 1096 C~iC~d~~~~~v---it~CgHifC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1142 (1413)
|++|....-+-+ -..|+|+||..||..|-... ..||. |+..+..
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPi--DR~EF~~ 172 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPV--DRGEFGE 172 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCch--hhhhhhe
Confidence 555544333322 24799999999998876543 35774 6655543
No 336
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=24.78 E-value=2.7e+02 Score=38.50 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=60.8
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec----CCCCcChHHHHHHhhhccCCCCc
Q 000575 1288 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTRP 1359 (1413)
Q Consensus 1288 ldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~----lD----p~WNP~~e~QAiGRvhRIGQtr~ 1359 (1413)
=++++=+.-|..+=.-|+. +-++|++ .|...+.|+|+.+=+.|+- +| -|-+|.-..|--||+.|-|+...
T Consensus 450 HH~GlLP~~K~~vE~Lfq~-GLvkvvF-aTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~ 527 (1041)
T COG4581 450 HHAGLLPAIKELVEELFQE-GLVKVVF-ATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVL 527 (1041)
T ss_pred hccccchHHHHHHHHHHhc-cceeEEe-ehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccccc
Confidence 3678888889988899998 8899998 5699999999986555433 22 34578899999999999999887
Q ss_pred EEEEEEE
Q 000575 1360 VSVLRLT 1366 (1413)
Q Consensus 1360 V~V~rLi 1366 (1413)
-+|....
T Consensus 528 G~vI~~~ 534 (1041)
T COG4581 528 GTVIVIE 534 (1041)
T ss_pred ceEEEec
Confidence 6665443
No 337
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=24.78 E-value=58 Score=39.41 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=27.5
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCC
Q 000575 888 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 927 (1413)
Q Consensus 888 ~rVIlDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPiqN 927 (1413)
.+|||||||++-.. ..--.+.+.-...++.|||-|.|-
T Consensus 353 ~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 353 SFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 47999999999543 222344555677899999998763
No 338
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.66 E-value=88 Score=29.55 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=33.8
Q ss_pred EEEEeChhhH-HHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhh
Q 000575 760 TLVVCPTSVL-RQWA-EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 816 (1413)
Q Consensus 760 TLIVcP~SLL-~QW~-~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~l 816 (1413)
.||||+..+- ..-. .-+++.+... .+.+.+.++. ..........+|+||++-+.-
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~-~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGS-ILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEE-TTTHHHHHTT-SEEEEEESSG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEec-ccccccccCCCcEEEEcCccc
Confidence 6999998644 3333 4555555433 3777777776 333334456799999997654
No 339
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.23 E-value=4.4e+02 Score=34.65 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.7
Q ss_pred cEEEecCCCchHHHHHHHHH
Q 000575 671 GILADDQGLGKTISTIALIL 690 (1413)
Q Consensus 671 GILADEMGLGKTl~aIALI~ 690 (1413)
-|+.-|.|-|||-|.--++.
T Consensus 374 vvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 374 VVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred EEEEecCCCCchhhhHHHHH
Confidence 68999999999999865554
No 340
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=24.21 E-value=33 Score=41.25 Aligned_cols=32 Identities=22% Similarity=0.644 Sum_probs=28.7
Q ss_pred ccccCCCCCCcchhcccCcccchhhhhhhhcc
Q 000575 1095 ICGICNDPPEDAVVSICGHVFCNQCICERLTA 1126 (1413)
Q Consensus 1095 ~C~iC~d~~~~~vit~CgHifC~~Ci~~~l~~ 1126 (1413)
.|++|..--++|++.+|+|-+|..|-...+..
T Consensus 6 kc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 6 KCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 59999999999999999999999999877654
No 341
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=23.77 E-value=1.6e+02 Score=26.70 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=31.8
Q ss_pred EEEEeChhhH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000575 760 TLVVCPTSVL--RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 815 (1413)
Q Consensus 760 TLIVcP~SLL--~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~ 815 (1413)
+|+|||...- ..-+..|++.++..+....+-+.+-... ....++|+||||-..
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCcc
Confidence 6899999854 3345777777764333222222222111 456789999999753
No 342
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=22.63 E-value=4.3e+02 Score=34.77 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=19.4
Q ss_pred CCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhc
Q 000575 783 KGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 818 (1413)
Q Consensus 783 ~~~L~Vlvy~G~~r~k~~~~L~~yDVVITTY~~l~~ 818 (1413)
...++.+.|+|+.+.- ..+++|+..|+.+-.
T Consensus 306 Gk~~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~ 336 (821)
T KOG1133|consen 306 GKELRGCPYYASRRAV-----PQAQLVTLPYQLLLH 336 (821)
T ss_pred hhhcCCCCchhhhhcc-----ccccEEeccHHHHHh
Confidence 3356677777765433 346677777777753
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=21.79 E-value=4.6e+02 Score=31.79 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=25.4
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHh----cccC-cEEEEecccCCCchHHH
Q 000575 887 WFRVVLDEAQSIKNHRTQVARACWG----LRAK-RRWCLSGTPIQNAIDDL 932 (1413)
Q Consensus 887 W~rVIlDEAH~IKN~~T~~skal~~----L~ak-~RwlLTGTPiqN~l~DL 932 (1413)
.++||+|.|++..+..... ..+.. +... ..+.+++|.-++.+...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 5689999999987543332 22222 2333 34667777644444433
No 344
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.91 E-value=1.6e+02 Score=36.46 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=54.0
Q ss_pred cCCCeEEEEcc-cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000575 1256 LGGEKAIVFSQ-WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1334 (1413)
Q Consensus 1256 ~~~~KvIIFSq-~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg~GLNLq~An~VI~ 1334 (1413)
.+|.++|+... |-.+..+++..|++.||.+..++.....+...+++. ++. .+|+
T Consensus 100 ~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-----~~t--------------------k~v~ 154 (396)
T COG0626 100 KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-----PNT--------------------KLVF 154 (396)
T ss_pred CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----cCc--------------------eEEE
Confidence 35777777766 778889999999999999888887755333333221 233 4566
Q ss_pred EcCCCCcChHHHHHHhhhccCCCC
Q 000575 1335 LDLWWNPTTEDQAIDRAHRIGQTR 1358 (1413)
Q Consensus 1335 lDp~WNP~~e~QAiGRvhRIGQtr 1358 (1413)
+|.+-||..+.+=|.++-|+-...
T Consensus 155 lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 155 LETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred EeCCCCcccccccHHHHHHHHHhc
Confidence 888888888887777776665444
No 345
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=20.82 E-value=53 Score=40.42 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=27.9
Q ss_pred ccCcEEEEecccCCCchHHHHHhhhhcccCCc
Q 000575 913 RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 944 (1413)
Q Consensus 913 ~ak~RwlLTGTPiqN~l~DLyslL~FL~p~~f 944 (1413)
..++..++||||+.|.+.++|++.++|.++.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 34667899999999999999999999988754
No 346
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=20.38 E-value=5.4e+02 Score=31.08 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHHHhhccCCCCCccEEEecCCCchHHHHHHHHHHcC
Q 000575 646 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 693 (1413)
Q Consensus 646 ~L~phQ~~av~wMl~rE~~~~~~~GGILADEMGLGKTl~aIALI~~~r 693 (1413)
.+||||...-..+.+.......+.+=+++-..|+||+..|.+++....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 478888887777766544332334456889999999999999876643
No 347
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.25 E-value=7.3e+02 Score=31.25 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS 1321 (1413)
Q Consensus 1258 ~~KvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~i~VLL~StkaGg 1321 (1413)
+..+||.+.....+.-....|...|+....+.|..+..++..++..... +.+++++++.....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l~ 113 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKCS 113 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHc
Confidence 4578999998888777777888899999999999999988888888855 77889998876543
Done!