Query 000575
Match_columns 1413
No_of_seqs 294 out of 2196
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:05:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000575.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_347-351//hhsearch_pdb/000575hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 720.1 20.3 608 500-1412 96-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 681.7 33.1 495 642-1413 51-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 632.7 36.5 462 639-1413 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 461.8 24.7 424 643-1386 150-632 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 375.8 31.1 465 644-1387 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 350.7 22.3 255 975-1413 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 341.6 19.6 379 644-1387 91-472 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 323.9 31.2 129 1257-1391 630-770 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 315.0 28.7 129 1257-1391 630-770 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 308.2 25.7 129 1257-1391 389-529 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=720.07 Aligned_cols=608 Identities=23% Similarity=0.360 Sum_probs=444.0
Q ss_pred CCCCHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC------CCCCHHHHHHCCCCC
Q ss_conf 2343021001000121111223---5779432145887776577999983898015896------565223642100135
Q 000575 500 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQP------ARSNQSLVLGKTLSM 570 (1413)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~ 570 (1413)
.++|.++..++.++.+..+.+. +-.++|+++...++.+...+.-+++..+|+|=.. .......++.||-++
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 34157999999998632778875189998788888756665420001113534689864113467898865999981578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 64436656423699841223677889999999877678899987517999999986106899977789998755677467
Q 000575 571 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 650 (1413)
Q Consensus 571 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~l~~~l~~l~~p~~e~~~P~g~l~v~L~ph 650 (1413)
+|..|.|............+...|.........+.........+. .+ ... ...|+......|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------~~--~~~-~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP------------RF--EKL-SVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC------------CC--CCC-SSCCTTCCSSCCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC------------CC--CCC-CCCCCCCCCCCCCHH
T ss_conf 734264336344333319999999976313447751010345577------------64--002-569986579975899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999984105877876399906898668999999998099998876303455431045433444323564211124
Q 000575 651 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 730 (1413)
Q Consensus 651 Q~~gl~wMl~rE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~~~~~~~~~~K~~ 730 (1413)
|+.|+.||+..... .+||||||+||||||+++|++|......
T Consensus 241 Q~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~----------------------------------- 282 (800)
T 3mwy_W 241 QLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA----------------------------------- 282 (800)
T ss_dssp HHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 99999999998513---8998998278753299999999999986-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-----------
Q ss_conf 543334589998753012422028999828999570329999999998814899938999948988888-----------
Q 000575 731 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----------- 799 (1413)
Q Consensus 731 ~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhGs~R~kd----------- 799 (1413)
....+++|||||.+++.||++|+.+|++ .+.+.+|+|..+.+.
T Consensus 283 -----------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 283 -----------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp -----------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred -----------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf -----------------------0779988999880389999999999779---96499982777778898887762263
Q ss_pred ---CCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---20016887999710124013698999981358988541179999753367666889999864366678999974200
Q 000575 800 ---PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 876 (1413)
Q Consensus 800 ---~~~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~~~~~~~~ 876 (1413)
.....+++||||||+++..+.
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------------------
T ss_conf 001344566788990699998649--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 01477445470199995874348744599999982115839999534587955789976431166885315888866326
Q 000575 877 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 956 (1413)
Q Consensus 877 ~~~~pL~~i~W~rVILDEAH~IKN~~T~~~kAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~ 956 (1413)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-
T ss_conf ---9983377325641344441471019999999752243897227857799999999999858663674344232223-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78889634379999998663100021211489886579983799998059999999999999998999999997054410
Q 000575 957 PISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1036 (1413)
Q Consensus 957 pi~~~~~~~~~~L~~lL~~imLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~~g~~~~ 1036 (1413)
..........|+.+++++|+||+|.++.. .||++.+.++.+++++.|+.+|..+.......+.... ..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-----~~ 504 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-----KG 504 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_conf --14689999999999757775320876643-----1688279999707999999999999999999986103-----54
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 19999999999998716710002457414666479998316089999999986530112466799987311013584110
Q 000575 1037 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1116 (1413)
Q Consensus 1037 ~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit~CgH~fC 1116 (1413)
...+++..+++||++|+||.|+...... .......
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~--------~~~~~~~------------------------------------- 539 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEER--------VLQKFGD------------------------------------- 539 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHH--------HCCCC---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCHHHH--------HHHHCCC-------------------------------------
T ss_conf 5446999999999873586542355789--------9886156-------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 24464320138998888532232343211235210233246899999888888742235886678644637899999999
Q 000575 1117 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1196 (1413)
Q Consensus 1117 ~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi~allelL 1196 (1413)
.... ... ........++|+..+.++|
T Consensus 540 ---------------------~~~~----------------------------~~~-----~~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 ---------------------GKMT----------------------------REN-----VLRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -----------------------CC----------------------------SHH-----HHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------CCCC----------------------------HHH-----HHHHHHHCCHHHHHHHHHH
T ss_conf ---------------------6555----------------------------778-----8887664276999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96027899865554322344788668999999888986434203568988320221101699729999165888999999
Q 000575 1197 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1276 (1413)
Q Consensus 1197 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~~LdlLe~ 1276 (1413)
..+. ..++|+||||||+.++++|+.
T Consensus 566 ~~~~-------------------------------------------------------~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 566 TRLK-------------------------------------------------------KDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp HHHT-------------------------------------------------------TTTCCEEEEESCHHHHHHHHH
T ss_pred HHHH-------------------------------------------------------HCCCEEEEEECHHHHHHHHHH
T ss_conf 9975-------------------------------------------------------279818999635999999999
Q ss_pred HHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99816992882389989999999999871499-94299960452223468554698999748999393989989431039
Q 000575 1277 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1277 ~L~~~gI~~~rldGsms~~eR~~~I~~Fn~d~-ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNPa~e~QAIgRvhRiG 1355 (1413)
+|...|+++.+++|+|+..+|++++++|+..+ ...|+|+|+++||+||||+.|++||++|++|||..+.||+||+||+|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99867997899969999999999999960899982599974544567877601636899468788116899999988558
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 989599999996999999999999999999998818997676----344679999997432
Q 000575 1356 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG----QQTRLTVDDLNYLFM 1412 (1413)
Q Consensus 1356 Qtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg~d~~~~----~~~~lt~~dLk~LF~ 1412 (1413)
|+++|+||||++++|+||+|++++.+|..+..++++.....+ ....++.+||..|+.
T Consensus 671 Q~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 671 QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9863799998619989999999999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=681.70 Aligned_cols=495 Identities=26% Similarity=0.386 Sum_probs=389.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 755677467999999999841058--778763999068986689999999980999988763034554310454334443
Q 000575 642 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 719 (1413)
Q Consensus 642 ~l~v~L~phQ~~gl~wMl~rE~~~--~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~~ 719 (1413)
.+...|+|||++|+.||+....+. ...+||||||+||||||+++|++|.......
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------------- 107 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------------- 107 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-----------------------
T ss_conf 640035199999999999842335445888759610787429999999999999748-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 23564211124543334589998753012422028999828999570329999999998814899938999948988888
Q 000575 720 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 799 (1413)
Q Consensus 720 ~~~~~~~~K~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhGs~R~kd 799 (1413)
+ ......+++|||||.+++.||++|+.+|++. .+.++.++|..+...
T Consensus 108 -----------~--------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 108 -----------P--------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp -----------T--------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred -----------C--------------------CCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHH
T ss_conf -----------6--------------------6567778579996589988799999997588--725999808988999
Q ss_pred C----------CCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2----------001688799971012401369899998135898854117999975336766688999986436667899
Q 000575 800 P----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 869 (1413)
Q Consensus 800 ~----------~~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~ 869 (1413)
. .....++|+|+||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------------------------------------------------
T ss_conf 9999999873377778757996389987657-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99742000147744547019999587434874459999998211583999953458795578997643116688531588
Q 000575 870 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 949 (1413)
Q Consensus 870 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~~kAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~ 949 (1413)
..|....|++||+||||+|||..++.++++..+++.+||+|||||+||++.|||++++||.|++|.....
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----------8750488657998786224780459999998555673799846734588999999998618876899999
Q ss_pred HHHHHCCCCCCCC------------HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 8866326788896------------3437999999866310002121148988657998379999805999999999999
Q 000575 950 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1017 (1413)
Q Consensus 950 F~~~i~~pi~~~~------------~~~~~~L~~lL~~imLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L 1017 (1413)
|..+|..|+.++. ......|+.++.++|+||+|.++.. .||++.+.++.+++++.|+++|+.+
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 99863261541677677888999999999999999889998710876764-----2798369999837998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99989999999970544101999999999999871671000245741466647999831608999999998653011246
Q 000575 1018 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICG 1097 (1413)
Q Consensus 1018 ~~~~r~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~ 1097 (1413)
....... ...........++..+++||++|+||.++.... ... +...
T Consensus 331 ~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~-----------~~~-------------~~~~---- 377 (644)
T 1z3i_X 331 LKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKC-----------LTG-------------EEGF---- 377 (644)
T ss_dssp HHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH-----------HHT-------------CTTC----
T ss_pred HHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH-----------HCC-------------CCHH----
T ss_conf 9989999-----987627621459999999999957999888887-----------415-------------4003----
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67999873110135841102446432013899888853223234321123521023324689999988888874223588
Q 000575 1098 ICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAP 1177 (1413)
Q Consensus 1098 iC~~~~~~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~ 1177 (1413)
+ . +. ...+..+...
T Consensus 378 -------~------------~-----------------~~------------------------~~~~~~~~~~------ 391 (644)
T 1z3i_X 378 -------D------------G-----------------AL------------------------DLFPQNYSTK------ 391 (644)
T ss_dssp -------T------------T-----------------GG------------------------GTSCSSCCSS------
T ss_pred -------H------------H-----------------HH------------------------HHCCCCCCCC------
T ss_conf -------5------------5-----------------77------------------------6454211100------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 66786446378999999999602789986555432234478866899999988898643420356898832022110169
Q 000575 1178 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1257 (1413)
Q Consensus 1178 ~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~ 1257 (1413)
......++|+..+..++..+.. ..
T Consensus 392 --~~~~~~s~K~~~l~~ll~~~~~------------------------------------------------------~~ 415 (644)
T 1z3i_X 392 --AVEPQLSGKMLVLDYILAMTRT------------------------------------------------------TT 415 (644)
T ss_dssp --SCCGGGSHHHHHHHHHHHHHHH------------------------------------------------------HC
T ss_pred --CCCCCCCHHHHHHHHHHHHHHH------------------------------------------------------CC
T ss_conf --0570117489999999999864------------------------------------------------------69
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 9729999165888999999998169928823899899999999998714999-429996045222346855469899974
Q 000575 1258 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLD 1336 (1413)
Q Consensus 1258 geKvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~eR~~~I~~Fn~d~e-v~VLLlSlkAGg~GLNLt~As~VIilD 1336 (1413)
++|+||||+|+.++++|+..|...|+.+.+++|+|+.++|++++++|++++. ..|+|+|+++||+||||+.|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 98799998059999999999997799789983999999999999996399999679998445566784652389899979
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 89993939899894310399895999999969999999999999999999988189976763446799999974329
Q 000575 1337 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1413 (1413)
Q Consensus 1337 p~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg~d~~~~~~~~lt~~dLk~LF~~ 1413 (1413)
+||||+.+.||+||+||+||+++|+||+|++++|+||+|+++|.+|+.++..+++++. .....++.+||+.||.+
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ--DVERHFSLGELRELFSL 570 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS--SCCCSSCHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHCCCCHHHHHHHHCC
T ss_conf 9998137999988403228987269999887988999999999999999999856860--54337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=632.65 Aligned_cols=462 Identities=33% Similarity=0.521 Sum_probs=397.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99875567746799999999984105877876399906898668999999998099998876303455431045433444
Q 000575 639 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 718 (1413)
Q Consensus 639 P~g~l~v~L~phQ~~gl~wMl~rE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~ 718 (1413)
|.+ +...|+|||++|+.||+.....+ +||||||+||+|||+++++++.....
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~~------------------------ 82 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAKK------------------------ 82 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHHH------------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 833-20033699999999999974179---98899808997389999999998875------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 32356421112454333458999875301242202899982899957032999999999881489993899994898888
Q 000575 719 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 798 (1413)
Q Consensus 719 ~~~~~~~~~K~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhGs~R~k 798 (1413)
..+.+++|||||.+++.||.+|+.+|++ .+++.+++|....
T Consensus 83 -----------------------------------~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~- 123 (500)
T 1z63_A 83 -----------------------------------ENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK- 123 (500)
T ss_dssp -----------------------------------TTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS-
T ss_pred -----------------------------------CCCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH-
T ss_conf -----------------------------------5899978999038999999999999779---9559997267021-
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82001688799971012401369899998135898854117999975336766688999986436667899997420001
Q 000575 799 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 878 (1413)
Q Consensus 799 d~~~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~~~~~~~~~~ 878 (1413)
..+..++|||+||+++..+.
T Consensus 124 --~~~~~~~ivi~t~~~l~~~~---------------------------------------------------------- 143 (500)
T 1z63_A 124 --IKLEDYDIILTTYAVLLRDT---------------------------------------------------------- 143 (500)
T ss_dssp --CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------
T ss_pred --CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------
T ss_conf --00357768996379972630----------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 47744547019999587434874459999998211583999953458795578997643116688531588886632678
Q 000575 879 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 958 (1413)
Q Consensus 879 ~~pL~~i~W~rVILDEAH~IKN~~T~~~kAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 958 (1413)
.+....|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.+++|..+..|...|..|+
T Consensus 144 --~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~ 221 (500)
T 1z63_A 144 --RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPI 221 (500)
T ss_dssp --HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHH
T ss_pred --HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf --211787287998084101787689999999600471899746777799999999999858775799899999852511
Q ss_pred CCCCHHHHHHHHHHHHHHHEEECCCC--CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88963437999999866310002121--1489886579983799998059999999999999998999999997054410
Q 000575 959 SKNPVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1036 (1413)
Q Consensus 959 ~~~~~~~~~~L~~lL~~imLRRtK~d--v~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~~g~~~~ 1036 (1413)
..+.......|+.++.++++||+|.+ +.. .||++.+..+.+++++.|+.+|+.+.......+ .......
T Consensus 222 ~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~-----~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~ 292 (500)
T 1z63_A 222 KKGDNMAKEELKAIISPFILRRTKYDKAIIN-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIK 292 (500)
T ss_dssp HTTCHHHHHHHHHHHTTTEECCCTTCHHHHT-----TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHH
T ss_pred CCCCHHHHHHHHHHHHHHEEEECCCCCCHHH-----CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCC
T ss_conf 1466889999999976674550255424112-----299975899981899999999999999999999----8642321
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 19999999999998716710002457414666479998316089999999986530112466799987311013584110
Q 000575 1037 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1116 (1413)
Q Consensus 1037 ~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit~CgH~fC 1116 (1413)
....++..+++||++|+||.++....
T Consensus 293 ~~~~~~~~l~~lr~~~~~p~l~~~~~------------------------------------------------------ 318 (500)
T 1z63_A 293 RKGMILSTLLKLKQIVDHPALLKGGE------------------------------------------------------ 318 (500)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHCSC------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCCC------------------------------------------------------
T ss_conf 06799999999998817998843852------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 24464320138998888532232343211235210233246899999888888742235886678644637899999999
Q 000575 1117 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1196 (1413)
Q Consensus 1117 ~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi~allelL 1196 (1413)
.....++|+..+.+++
T Consensus 319 ----------------------------------------------------------------~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 319 ----------------------------------------------------------------QSVRRSGKMIRTMEII 334 (500)
T ss_dssp ----------------------------------------------------------------CCSTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CHHHCCHHHHHHHHHH
T ss_conf ----------------------------------------------------------------0111155299999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96027899865554322344788668999999888986434203568988320221101699729999165888999999
Q 000575 1197 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1276 (1413)
Q Consensus 1197 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~~LdlLe~ 1276 (1413)
..+.. .++|+|||++|+.+++.|+.
T Consensus 335 ~~~~~-------------------------------------------------------~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 335 EEALD-------------------------------------------------------EGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHHHT-------------------------------------------------------TTCCEEEECSCHHHHHHHHH
T ss_pred HHHHC-------------------------------------------------------CCCCEEEEEEHHHHHHHHHH
T ss_conf 99872-------------------------------------------------------68868999721889999999
Q ss_pred HHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99816-99288238998999999999987149994299960452223468554698999748999393989989431039
Q 000575 1277 SLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1355 (1413)
Q Consensus 1277 ~L~~~-gI~~~rldGsms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNPa~e~QAIgRvhRiG 1355 (1413)
.|... |+.+.+++|+|+.++|++++++|+++++++|+|++++++++|+||+.|++||++|++|||..+.||+||+||+|
T Consensus 360 ~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 360 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTT
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 99885388769997999999999999996089998779995333557774455888999589989545899999888738
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9895999999969999999999999999999988189976763446799999974329
Q 000575 1356 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1413 (1413)
Q Consensus 1356 Qtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg~d~~~~~~~~lt~~dLk~LF~~ 1413 (1413)
|+++|+||+|++++|+||+|++++++|+.++..+++.+. .....++.+||+.||..
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTT--GGGGSSCHHHHHHHHSC
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHCCCCHHHHHHHHCC
T ss_conf 987069999774898999999999999999999860685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=461.78 Aligned_cols=424 Identities=18% Similarity=0.258 Sum_probs=317.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55677467999999999841058778763999068986689999999980999988763034554310454334443235
Q 000575 643 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 722 (1413)
Q Consensus 643 l~v~L~phQ~~gl~wMl~rE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~~~~~ 722 (1413)
..+.|+|||+.++.|++.+. ..|+||||+||+|||+++++++.....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~---------------------------- 196 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLL---------------------------- 196 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHH----------------------------
T ss_conf 89997099999999999705-----898898789997599999999999998----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----C
Q ss_conf 642111245433345899987530124220289998289995703299999999988148999389999489888----8
Q 000575 723 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 798 (1413)
Q Consensus 723 ~~~~~K~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhGs~R~----k 798 (1413)
..+.+++|||||.+|+.||..|+.+++. +.+.+|+|.... .
T Consensus 197 -------------------------------~g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 197 -------------------------------SGAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHD 241 (968)
T ss_dssp -------------------------------TSSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHT
T ss_pred -------------------------------HCCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHH
T ss_conf -------------------------------1899829999578889999999999869----98799806205554320
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82001688799971012401369899998135898854117999975336766688999986436667899997420001
Q 000575 799 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 878 (1413)
Q Consensus 799 d~~~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~~~~~~~~~~ 878 (1413)
....+..++|||+||+++......
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHHHHCHHH--------------------------------------------------------
T ss_conf 036445689899768998648788--------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHH---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 47744547019999587434874459---99999821--15839999534587955789976431166885315888866
Q 000575 879 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 953 (1413)
Q Consensus 879 ~~pL~~i~W~rVILDEAH~IKN~~T~---~~kAl~~L--~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~ 953 (1413)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++||.+..|..+..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88764158778974446762588875429999999986257858999768766987999999982593011898999999
Q ss_pred HCCCC----------CC---------------------------------CCHHHHHHHHHHH-----HHHHEEECCCCC
Q ss_conf 32678----------88---------------------------------9634379999998-----663100021211
Q 000575 954 IKVPI----------SK---------------------------------NPVKGYKKLQAVL-----KTIMLRRTKGTL 985 (1413)
Q Consensus 954 i~~pi----------~~---------------------------------~~~~~~~~L~~lL-----~~imLRRtK~dv 985 (1413)
+.... .. ........+..++ ..+++|+++..+
T Consensus 346 ~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 346 QKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98578899999987426789988999999884203367887503622233379999999999986173326563226554
Q ss_pred CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 48988657998379999805999999999999999899999999705441019999999999998716710002457414
Q 000575 986 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1065 (1413)
Q Consensus 986 ~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s 1065 (1413)
. .+|++....+.+.+++.++..|...... ........ ....+.+|..+
T Consensus 426 ~------~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~----------~~~~~l~pe~~------- 473 (968)
T 3dmq_A 426 K------GFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED----------RARDMLYPERI------- 473 (968)
T ss_dssp C------CCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG----------GTHHHHCSGGG-------
T ss_pred C------CCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH----------HHHHHCCHHHH-------
T ss_conf 5------5671115752368999999999987543---------02126677----------77641085989-------
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 66647999831608999999998653011246679998731101358411024464320138998888532232343211
Q 000575 1066 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1145 (1413)
Q Consensus 1066 ~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~ 1145 (1413)
T Consensus 474 -------------------------------------------------------------------------------- 473 (968)
T 3dmq_A 474 -------------------------------------------------------------------------------- 473 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23521023324689999988888874223588667864463789999999996027899865554322344788668999
Q 000575 1146 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1225 (1413)
Q Consensus 1146 ~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 1225 (1413)
+. .+ . . ........+.|+..+.+++...
T Consensus 474 ~~------~l---------~----~-------~~~~~~~~~~K~~~L~~ll~~~-------------------------- 501 (968)
T 3dmq_A 474 YQ------EF---------E----G-------DNATWWNFDPRVEWLMGYLTSH-------------------------- 501 (968)
T ss_dssp TT------TT---------T----S-------SSCCTTTTSHHHHHHHHHHHHT--------------------------
T ss_pred HH------HH---------H----H-------HHHCCCCCCHHHHHHHHHHHHC--------------------------
T ss_conf 98------76---------4----3-------3313568567999999999837--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9998889864342035689883202211016997299991658889999999981-699288238998999999999987
Q 000575 1226 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDF 1304 (1413)
Q Consensus 1226 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~eR~~~I~~F 1304 (1413)
.+.|+|||+++..+++.|+..|.. .|+++..++|+|+..+|++++++|
T Consensus 502 -------------------------------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 502 -------------------------------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp -------------------------------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf -------------------------------9997899969599999999999987498389984999999999999997
Q ss_pred HCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 1499-942999604522234685546989997489993939899894310399895999999969999999999999999
Q 000575 1305 NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1383 (1413)
Q Consensus 1305 n~d~-ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~ 1383 (1413)
++.. .+.||| ++.++++|+|++.|++||++|++|||..+.|++||++|+||++.|+||+++.++|+|++|++++.+|.
T Consensus 551 ~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 551 AEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp HSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred HCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 47997630898-53343168885567679995699987899987011430799850899980577719999999998678
Q ss_pred HHH
Q ss_conf 999
Q 000575 1384 EMV 1386 (1413)
Q Consensus 1384 ~l~ 1386 (1413)
+++
T Consensus 630 ~~~ 632 (968)
T 3dmq_A 630 DAF 632 (968)
T ss_dssp CCS
T ss_pred CCE
T ss_conf 763
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=375.82 Aligned_cols=465 Identities=15% Similarity=0.171 Sum_probs=280.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 56774679999999998410587787639990689866899999999809999887630345543104543344432356
Q 000575 644 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 644 ~v~L~phQ~~gl~wMl~rE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~~~~~~ 723 (1413)
..+|+|||++++.|+++. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-C
Q ss_conf 4211124543334589998753012422028999828999570-3299999999988148999389999489888882-0
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-C 801 (1413)
Q Consensus 724 ~~~~K~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhGs~R~kd~-~ 801 (1413)
.+.+.+|||||. +|+.||.+|+.+++.. ...++..++|....... .
T Consensus 50 -------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp -------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHH
T ss_pred -------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHEEEEECCCCHHHHHH
T ss_conf -------------------------------47985999978889999999999987475-6111687607753355665
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01688799971012401369899998135898854117999975336766688999986436667899997420001477
Q 000575 802 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 881 (1413)
Q Consensus 802 ~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~~~~~~~~~~~~p 881 (1413)
.+..++|+|+||+++...+.. ..
T Consensus 98 ~~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~ 120 (494)
T 1wp9_A 98 AWARAKVIVATPQTIENDLLA---------------------------------------------------------GR 120 (494)
T ss_dssp HHHHCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred HCCCCCEEEECHHHHHHHHHC---------------------------------------------------------CC
T ss_conf 335798999639999999860---------------------------------------------------------87
Q ss_pred CCCCCCCEEEECCCCCCCCHHHH--HHHH-HHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 44547019999587434874459--9999-98211583999953458795578997643116688531588886632678
Q 000575 882 LAKVGWFRVVLDEAQSIKNHRTQ--VARA-CWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 958 (1413)
Q Consensus 882 L~~i~W~rVILDEAH~IKN~~T~--~~kA-l~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 958 (1413)
+....|.+||+||||++++.... ..+. .......++|+|||||. |+..+++.++.++..........+...+...+
T Consensus 121 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 199 (494)
T 1wp9_A 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199 (494)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGC
T ss_pred CCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHC
T ss_conf 15654108999787566888819999999973288776999956998-88578999998507000502678758788752
Q ss_pred C--------CCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--------89634379999998663100021211489886579983799998059999999999999998999999997
Q 000575 959 S--------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 1030 (1413)
Q Consensus 959 ~--------~~~~~~~~~L~~lL~~imLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~ 1030 (1413)
. .........+...+..++.+|.+.....+ .+++.. ..++..+... + ...+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~---~----~~~~~~~~~ 263 (494)
T 1wp9_A 200 KGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVLR---A----GQIINEEMA 263 (494)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHHH---H----HHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHHH---H----HHHHHHHHH
T ss_conf 78742689568858899999989899999999999735----565457-----7733557899---9----999998753
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 05-44101999999999999871671000245741466647999831608999999998653011246679998731101
Q 000575 1031 AG-TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVS 1109 (1413)
Q Consensus 1031 ~g-~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit 1109 (1413)
.+ .........+..++.++.+..... ..........+..+... |........-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~------~~~~~~~~~~- 317 (494)
T 1wp9_A 264 KGNHDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE------AKAGSTKASK- 317 (494)
T ss_dssp TTCCSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH------HHTTCCHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH------HCCCCCHHHH-
T ss_conf 356311347999988888999999998-------------------52579999999999875------2232114556-
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 35841102446432013899888853223234321123521023324689999988888874223588667864463789
Q 000575 1110 ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKI 1189 (1413)
Q Consensus 1110 ~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi 1189 (1413)
.+++..-+... ... ... .......++|+
T Consensus 318 ---~~~~~~~~~~~----------------------~~~--~~~-------------------------~~~~~~~~~k~ 345 (494)
T 1wp9_A 318 ---EIFSDKRMKKA----------------------ISL--LVQ-------------------------AKEIGLDHPKM 345 (494)
T ss_dssp ---HHHTSHHHHHH----------------------HHH--HHH-------------------------HHHHTCSCHHH
T ss_pred ---HHHHHHHHHHH----------------------HHH--HHH-------------------------HHHCCCCCHHH
T ss_conf ---66650788989----------------------999--998-------------------------87458998699
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHH
Q ss_conf 99999999602789986555432234478866899999988898643420356898832022110169972999916588
Q 000575 1190 KAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTK 1269 (1413)
Q Consensus 1190 ~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~ 1269 (1413)
..+.++|..+.. ...+.|+|||+++..
T Consensus 346 ~~l~~~l~~~~~-----------------------------------------------------~~~~~k~lVF~~~~~ 372 (494)
T 1wp9_A 346 DKLKEIIREQLQ-----------------------------------------------------RKQNSKIIVFTNYRE 372 (494)
T ss_dssp HHHHHHHHHHHH-----------------------------------------------------HCTTCCEEEECSCHH
T ss_pred HHHHHHHHHHHC-----------------------------------------------------CCCCCEEEEEECCHH
T ss_conf 999999999843-----------------------------------------------------689975999976689
Q ss_pred HHHHHHHHHHHCCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 899999999816992882389--------989999999999871499942999604522234685546989997489993
Q 000575 1270 MLDLLEASLKDSSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1341 (1413)
Q Consensus 1270 ~LdlLe~~L~~~gI~~~rldG--------sms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNP 1341 (1413)
+++.++..|...|+.+.+++| +|+..+|+++++.|++ +.+.||| +|.++++|+||+.+++||++|++|||
T Consensus 373 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 373 TAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCH
T ss_conf 999999999975998079965665444445899999999999866-9946999-88841258871437989992898878
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 9398998943103998959999999699999999999999999999
Q 000575 1342 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1387 (1413)
Q Consensus 1342 a~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~ 1387 (1413)
....|++||++|.|| +.+|+|++++|+||+++.++.+|.+++.
T Consensus 451 ~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 451 IRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999998752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=350.74 Aligned_cols=255 Identities=29% Similarity=0.435 Sum_probs=220.5
Q ss_pred HHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 63100021211489886579983799998059999999999999998999999997054410199999999999987167
Q 000575 975 TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1054 (1413)
Q Consensus 975 ~imLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~H 1054 (1413)
.--+||+|+++.. .|||+.+.+++|+|+++|+++|+.+.......+. .........+++..+++|||+|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----1999779999818999999999999999999997----403521288999999999998489
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 10002457414666479998316089999999986530112466799987311013584110244643201389988885
Q 000575 1055 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTR 1134 (1413)
Q Consensus 1055 P~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~ 1134 (1413)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 32232343211235210233246899999888888742235886678644637899999999960278998655543223
Q 000575 1135 NCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRH 1214 (1413)
Q Consensus 1135 ~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~ 1214 (1413)
.....++|+..+.++|..+..
T Consensus 90 ----------------------------------------------~~~~~s~K~~~L~~ll~~~~~------------- 110 (271)
T 1z5z_A 90 ----------------------------------------------QSVRRSGKMIRTMEIIEEALD------------- 110 (271)
T ss_dssp ----------------------------------------------CCSTTCHHHHHHHHHHHHHHH-------------
T ss_pred ----------------------------------------------CCCCCCHHHHHHHHHHHHHHH-------------
T ss_conf ----------------------------------------------223468999999999999986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf 4478866899999988898643420356898832022110169972999916588899999999816-992882389989
Q 000575 1215 SFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMS 1293 (1413)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~~LdlLe~~L~~~-gI~~~rldGsms 1293 (1413)
.++|+||||+|+.++++|+..|... |+.+.+++|+++
T Consensus 111 ------------------------------------------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 111 ------------------------------------------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp ------------------------------------------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred ------------------------------------------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf ------------------------------------------79969999551999999999998733984799979999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 99999999987149994299960452223468554698999748999393989989431039989599999996999999
Q 000575 1294 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1373 (1413)
Q Consensus 1294 ~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEE 1373 (1413)
..+|++++++|+++++++|+|+|+++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||
T Consensus 149 ~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 149 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 99999999983289999789972235158867644899999799998518999998523238998569999854988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9999999999999988189976763446799999974329
Q 000575 1374 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1413 (1413)
Q Consensus 1374 rIl~lq~kK~~l~~~alg~d~~~~~~~~lt~~dLk~LF~~ 1413 (1413)
+|++++.+|+.++..+++.+. .....++.+||+.||..
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCC--HHHHCCCHHHHHHHHCC
T ss_conf 999999999999999971670--54323899999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=341.63 Aligned_cols=379 Identities=17% Similarity=0.167 Sum_probs=270.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 56774679999999998410587787639990689866899999999809999887630345543104543344432356
Q 000575 644 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 723 (1413)
Q Consensus 644 ~v~L~phQ~~gl~wMl~rE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~k~~~~~~~~d~~~~~~~~~~ 723 (1413)
..+|+|||.+++.++++. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCC
Q ss_conf 4211124543334589998753012422028999828999570-329999999998814899938-99994898888820
Q 000575 724 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDPC 801 (1413)
Q Consensus 724 ~~~~K~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~-VlvyhGs~R~kd~~ 801 (1413)
.+++|||||. +|+.||.+++.+ + .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGG-G----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHH-C----CCCCEEEECCCCCC----
T ss_conf ---------------------------------99999998799999999999996-7----99636998787677----
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01688799971012401369899998135898854117999975336766688999986436667899997420001477
Q 000575 802 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 881 (1413)
Q Consensus 802 ~l~~yDVVITTY~~l~~e~~k~~~~~~~de~~k~~~~~~~~~~~~~~~~kk~k~~~~~~r~~~~~kk~~~~~~~~~~~~p 881 (1413)
..+|+|+||+.+.....
T Consensus 171 ---~~~Ivv~T~~~l~~~~~------------------------------------------------------------ 187 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE------------------------------------------------------------ 187 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH------------------------------------------------------------
T ss_pred ---CCCEEEEECHHHHHHHH------------------------------------------------------------
T ss_conf ---67789997689997799------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 44547019999587434874459999998211583999953458795578997643116688531588886632678889
Q 000575 882 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 961 (1413)
Q Consensus 882 L~~i~W~rVILDEAH~IKN~~T~~~kAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi~~~ 961 (1413)
...-.|..||+||||.+.+.... +.+..+.+.++++|||||.++.-.+
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------------------------ 235 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------------------------ 235 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG------------------------------
T ss_pred HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH------------------------------
T ss_conf 73687778999897578976899--9997357781899932766889778------------------------------
Q ss_pred CHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 63437999999866310002121148988657998379999805999999999999999899999999705441019999
Q 000575 962 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1041 (1413)
Q Consensus 962 ~~~~~~~L~~lL~~imLRRtK~dv~dg~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~~r~~~~~~~~~g~~~~~~~~I 1041 (1413)
..+..++.+++.++...++..+ .+++.....+.+++++.++..|..+...... +.....
T Consensus 236 -----~~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~-------- 294 (472)
T 2fwr_A 236 -----EILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARG-------- 294 (472)
T ss_dssp -----GSHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCC--------
T ss_pred -----HHHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCC--------
T ss_conf -----9999972985765478987067----6788189999858998999999999999999----998647--------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 99999999871671000245741466647999831608999999998653011246679998731101358411024464
Q 000575 1042 LLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCIC 1121 (1413)
Q Consensus 1042 L~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~~~~vit~CgH~fC~~Ci~ 1121 (1413)
........ -...+..+
T Consensus 295 --------------~~~~~~~~----------------------------------------~~~~~~~~---------- 310 (472)
T 2fwr_A 295 --------------ITLRRAED----------------------------------------FNKIVMAS---------- 310 (472)
T ss_dssp --------------CTTTCCSS----------------------------------------STTTTTTT----------
T ss_pred --------------CCCCCHHH----------------------------------------HHHHHHHH----------
T ss_conf --------------54224466----------------------------------------89999872----------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32013899888853223234321123521023324689999988888874223588667864463789999999996027
Q 000575 1122 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAK 1201 (1413)
Q Consensus 1122 ~~l~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~ssKi~allelL~~l~~ 1201 (1413)
..++. +...+ ...... ..-....+.|+..+.+++...
T Consensus 311 -------~~~~~--~~~~~-----~~~~~~---------------------------~~~~~~~~~k~~~l~~~l~~~-- 347 (472)
T 2fwr_A 311 -------GYDER--AYEAL-----RAWEEA---------------------------RRIAFNSKNKIRKLREILERH-- 347 (472)
T ss_dssp -------CCSSS--SSTTT-----HHHHHH---------------------------HHHHHSCSHHHHHHHHHHHHT--
T ss_pred -------CCCHH--HHHHH-----HHHHHH---------------------------HHHHHCCHHHHHHHHHHHHHC--
T ss_conf -------36988--99999-----999999---------------------------997633738999999999857--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 89986555432234478866899999988898643420356898832022110169972999916588899999999816
Q 000575 1202 PRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1281 (1413)
Q Consensus 1202 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~geKvIIFSq~t~~LdlLe~~L~~~ 1281 (1413)
.+.|+|||+++..+++.+...|.
T Consensus 348 -------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l~-- 370 (472)
T 2fwr_A 348 -------------------------------------------------------RKDKIIIFTRHNELVYRISKVFL-- 370 (472)
T ss_dssp -------------------------------------------------------SSSCBCCBCSCHHHHHHHHHHTT--
T ss_pred -------------------------------------------------------CCCCEEEEECCHHHHHHHHHHHC--
T ss_conf -------------------------------------------------------89838999797999999999748--
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 9928823899899999999998714999429996045222346855469899974899939398998943103998-959
Q 000575 1282 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT-RPV 1360 (1413)
Q Consensus 1282 gI~~~rldGsms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GLNLt~As~VIilDp~WNPa~e~QAIgRvhRiGQt-r~V 1360 (1413)
+..++|.++..+|+++++.|++ ++++||+ ++.++++|+|++.+++||++|++||+....|++||++|.||. +.|
T Consensus 371 ---~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 371 ---IPAITHRTSREEREEILEGFRT-GRFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ---CCBCCSSSCSHHHHTHHHHHHH-SSCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ---CCEEECCCCHHHHHHHHHHHHC-CCCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf ---6556289999999999999867-9988899-8570514846202868999899998889999876315777998539
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999699999999999999999999
Q 000575 1361 SVLRLTVKNTVEDRILALQQKKREMVA 1387 (1413)
Q Consensus 1361 ~VyrLi~kdTIEErIl~lq~kK~~l~~ 1387 (1413)
.||.|+.++|+|+++.+++++|+++++
T Consensus 446 ~i~~lv~~~t~ee~~~~~r~~~~~~a~ 472 (472)
T 2fwr_A 446 VLYELISRGTGEVNTARRRKNAAKGAA 472 (472)
T ss_dssp EEEEEEECSCC----------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999998199853799999987650589
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=323.85 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=114.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916588899999999816------------9928823899899999999998714999429996045222346
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1324 (1413)
Q Consensus 1257 ~geKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GL 1324 (1413)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.++++||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCC
T ss_conf 9974999969799999999998637353666616996578765678889999999999863159815999-807264277
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999748999393989989431039989599999996999999999999999999998818
Q 000575 1325 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1391 (1413)
Q Consensus 1325 NLt~As~VIilDp~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg 1391 (1413)
|++.+++||+||++|||....|++|| ||.+++.+++|+.++|+|++.. ++..|.+++..++.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 60558989993899988999996487----7888877999986988999999-98899999999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=314.98 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=116.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916588899999999816------------9928823899899999999998714999429996045222346
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1324 (1413)
Q Consensus 1257 ~geKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GL 1324 (1413)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|..++++|++++.++||| +|.++++||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GI 708 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCC
T ss_conf 9970899979589999999999747564665521898447754578989999999999851369704999-748054479
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999748999393989989431039989599999996999999999999999999998818
Q 000575 1325 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1391 (1413)
Q Consensus 1325 NLt~As~VIilDp~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg 1391 (1413)
|++.+++||+||++|||....|++|| ||.+++.+++|+.++++|++ ..++..|.+++..++.
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75108989994899988999985388----87878659999728768899-9988899999999999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=308.23 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=115.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9972999916588899999999816------------9928823899899999999998714999429996045222346
Q 000575 1257 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1324 (1413)
Q Consensus 1257 ~geKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~ev~VLLlSlkAGg~GL 1324 (1413)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.++++||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gi 467 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 467 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCC
T ss_conf 9854999976589999999999858775500014787367765565669899999999840469658999-767043377
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999748999393989989431039989599999996999999999999999999998818
Q 000575 1325 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1391 (1413)
Q Consensus 1325 NLt~As~VIilDp~WNPa~e~QAIgRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~alg 1391 (1413)
|++.+++||+||++|||....|++|| ||.+++.++.|+.++++|++ ..++..|.+++..++.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75217889991899978899886387----87888418999827636777-7755799999999999
Done!