BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000576
(1412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFAR 900
N+++ + G AL+G +G+GK+TL+ +AG + T+G + ++ P K R
Sbjct: 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD----R 75
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQAL 958
G QN P +TVY+++ + LR +P E+D K R++ Q
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ-- 133
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 134 --------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ++RV LV + +DE + LD+ ++ L++ L G T + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTH 192
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHV 413
EA + D I +I +G+I+ G + V
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYP---KKQETF 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 22 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 131
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 132 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ H+ S + D + ++++G
Sbjct: 182 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I + + D II++ G+IV QG + +L
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 129
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 130 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ H+ S + D + ++++G
Sbjct: 180 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I + + D II++ G+IV QG + +L
Sbjct: 186 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ H+ S + D + ++++G
Sbjct: 186 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I + + D II++ G+IV QG + +L
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 231
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGY 904
V+ F G + ++G G+GKTTL+ +LAG G I + G P + GY
Sbjct: 29 DVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKNVGY 85
Query: 905 CEQNDIHSPQV---TVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL 961
QN S Q+ TV E + +S L + +S+ RK LVGL
Sbjct: 86 VFQN--PSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVL-----------ELVGL 130
Query: 962 PGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
G+ LS Q++RL IA L + + +DEP S LD + + + + + + G
Sbjct: 131 SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 1017 RTVVCTIHQ 1025
+ ++ H+
Sbjct: 191 KGIILVTHE 199
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 105/274 (38%), Gaps = 52/274 (18%)
Query: 155 SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVT 214
LN +S R +LK V+ G++ +++G S L G +
Sbjct: 13 ELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL----LAAAGEIF 68
Query: 215 YNGHNMDEFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
+G D F+ ++ Y+ Q+ I TV E +AFS G+ +E+ +R K
Sbjct: 69 LDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKK 123
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD--VCADTMVGDEMIRGISGGQRK 331
+L+++GL AD + +SGGQ++
Sbjct: 124 -----------------------------VLELVGLSGLAAADPL-------NLSGGQKQ 147
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391
R+ ML + +DE + LD + +I L + +G L++ E D
Sbjct: 148 RLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVT---HELEYLD 204
Query: 392 LFDDIILISDGQIVYQGPREHVLEFFEFMGFKCP 425
D I+ IS+G I + G E +E EF + P
Sbjct: 205 DMDFILHISNGTIDFCGSWEEFVE-REFDDVEIP 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G G+GK+TL ++ Y+ G + I G+
Sbjct: 22 DNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 131
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 132 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ H+ S + D + ++++G
Sbjct: 182 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I + + D II++ G+IV QG + +L
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 103/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ D+ TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ H+ S + D + ++++G
Sbjct: 186 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + D+ ++ LD + I +R I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI---MRNMHKI 191
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I + + D II++ G+IV QG + +L
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 30/236 (12%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFAR 900
N ++ + G L+G +G GKTT + ++AG T G + G+ ++ P K +
Sbjct: 29 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 88
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQAL 958
+ Q+ P +TVYE++ + ++ P E+D + R + L
Sbjct: 89 VF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--------WAAELLQIEELL 136
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 194
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRGG-------QEIYVGPLGRHSSHLIKYFEGNP 1067
+ ++ D + ++ RG E+Y+ P +S + F G P
Sbjct: 195 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP----NSVFVATFIGAP 246
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQR+RV +V MDE + LD+ + +++ L+ TT I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 385 PAPEAYDLFDDIILISDGQIVYQG 408
EA + D I +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 30/236 (12%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFAR 900
N ++ + G L+G +G GKTT + ++AG T G + G+ ++ P K +
Sbjct: 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQAL 958
+ Q+ P +TVYE++ + ++ P E+D + R + L
Sbjct: 88 VF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--------WAAELLQIEELL 135
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
P LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 136 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 193
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRGG-------QEIYVGPLGRHSSHLIKYFEGNP 1067
+ ++ D + ++ RG E+Y+ P +S + F G P
Sbjct: 194 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP----NSVFVATFIGAP 245
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQR+RV +V MDE + LD+ + +++ L+ TT I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 385 PAPEAYDLFDDIILISDGQIVYQG 408
EA + D I +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 21/212 (9%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYV-TGNITISGYPKKQETFARIS 902
VS R G + L+G +G+GKTT++ ++AG R T G V G ++ P ++ R
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK----RNV 89
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQALVG 960
G QN +TVY+++ + + P E+D++ R++ +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE---- 145
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1019
LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 146 ------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
V H + E D + +L G E + P
Sbjct: 200 VFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 44/248 (17%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQ-R 227
++GVS IR G M LLGP S + G V G + + PQ R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKR 87
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
+ Q+ MTV + ++F R + V P ++D ++
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRV--------------------PKDEMDARVR 127
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
+L+ + L+ A+ + +SGGQ++RV L Q
Sbjct: 128 E--------------LLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLL 168
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQ 407
DE +D+ ++ +RQ +H G T + + EA ++ D ++++ +G +
Sbjct: 169 FDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227
Query: 408 GPREHVLE 415
G E V E
Sbjct: 228 GTPEEVYE 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 857 ALMGVTGAGKTTLMDVLAGRK--TTG--YVTGNITISGYPKKQETFARISGYCEQNDIHS 912
++G +GAGKTT M ++AG +TG Y + S R G Q
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 913 PQVTVYESLLYS-AWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQ 971
P +T +E++ + +++S E + RK L P LS Q
Sbjct: 95 PNLTAFENIAFPLTNMKMSKE---EIRKRV----EEVAKILDIHHVLNHFP--RELSGAQ 145
Query: 972 RKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ + G T++ H P+
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVVSHDPA- 202
Query: 1029 DIFEAFDELFLLKRGG-------QEIYVGPLGRHSSHLIKYFEGNPGVSKIKN-GYNPAT 1080
DIF D + +L +G +++Y P+ + LI E N K+ N G +
Sbjct: 203 DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG--EINELEGKVTNEGVVIGS 260
Query: 1081 WMLEVTSPSQETALGIDFADIYKSSELYRRN 1111
V+ S +GI D+ S ++ + +
Sbjct: 261 LRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SG Q++RV LV +DE + LD+ ++ +S R + ++ ++L
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTL 194
Query: 383 LQPAPEAYDLF---DDIILISDGQIVYQGPRE 411
L + + D+F D + ++ G++V G E
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 857 ALMGVTGAGKTTLMDVLAGRK--TTG--YVTGNITISGYPKKQETFARISGYCEQNDIHS 912
++G +GAGKTT M ++AG +TG Y + S R G Q
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 913 PQVTVYESLLYS-AWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQ 971
P +T +E++ + +++S E + RK L P LS Q
Sbjct: 95 PNLTAFENIAFPLTNMKMSKE---EIRKRV----EEVAKILDIHHVLNHFP--RELSGGQ 145
Query: 972 RKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ + G T++ H P+
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVVSHDPA- 202
Query: 1029 DIFEAFDELFLLKRGG-------QEIYVGPLGRHSSHLIKYFEGNPGVSKIKN-GYNPAT 1080
DIF D + +L +G +++Y P+ + LI E N K+ N G +
Sbjct: 203 DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG--EINELEGKVTNEGVVIGS 260
Query: 1081 WMLEVTSPSQETALGIDFADIYKSSELYRRN 1111
V+ S +GI D+ S ++ + +
Sbjct: 261 LRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SGGQ++RV LV +DE + LD+ ++ +S R + ++ ++L
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTL 194
Query: 383 LQPAPEAYDLF---DDIILISDGQIVYQGPRE 411
L + + D+F D + ++ G++V G E
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 129
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 130 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ I + + D + ++++G
Sbjct: 180 RNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I ++ D II++ G+IV QG + +L
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQET---F 898
++++ + + G + ++G +G+GK+TL ++ Y+ G + I G+
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 899 ARISGYCEQNDI------------HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXX 946
R G Q+++ +P ++V E ++Y+A L + + S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 947 XXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R + + + GRTV+ I + + D + ++++G
Sbjct: 186 RNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T+VG++ G+SGGQR+R+ LV + DE ++ LD + I +R I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T+I ++ D II++ G+IV QG + +L
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 21/201 (10%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQ 907
+P + A G +G GK+T+ +L + G ITI G P E + G+ Q
Sbjct: 26 QPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
Query: 908 NDIHSPQVTVYESLLYSAWLRLSPE-----VDSKTRKMFIXXXXXXXXXXXXRQALVGLP 962
D T+ E+L Y + E +D + F+ VG
Sbjct: 84 -DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE------VGER 136
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022
GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +++ GRT +
Sbjct: 137 GVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVI 194
Query: 1023 IHQPSIDIFEAFDELFLLKRG 1043
H+ S I +A D+++ +++G
Sbjct: 195 AHRLST-IVDA-DKIYFIEKG 213
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T VG+ ++ ISGGQR+R+ + + +DE + LDS + + +L +
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---L 185
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
++G T + + D D I I GQI G ++
Sbjct: 186 MKGRTTLVIAHRLSTIVDA-DKIYFIEKGQITGSGKHNELV 225
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET----FARISGYCEQN 908
G +TAL+G +G+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQ------ALVGLP 962
+ S ++ E++ Y A + S T + R +VG
Sbjct: 428 ILFS--CSIAENIAYGA-----DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022
GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+
Sbjct: 481 GVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVI 538
Query: 1023 IHQPS 1027
H+ S
Sbjct: 539 AHRLS 543
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 50/259 (19%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLY----GRVTYNGH 218
+ + I + S I G +T L+GP S LRLY G ++ +GH
Sbjct: 354 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-------LRLYDPASGTISLDGH 406
Query: 219 NMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
++ + P + +SQ + + ++ E +A+ A
Sbjct: 407 DIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA----------------------- 442
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
DP A E Q + V + + I +T+VG++ + +SGGQ++R+
Sbjct: 443 --DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAI 494
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395
L+ + +DE ++ LD+ + + +L + ++ G T++ + + +
Sbjct: 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHRLSTIKNA-NM 550
Query: 396 IILISDGQIVYQGPREHVL 414
+ ++ G+I G E +L
Sbjct: 551 VAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET----FARISGYCEQN 908
G +TAL+G +G+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXR-QALVGLPGVNGL 967
+ S ++ E++ Y A S + R + +VG GV L
Sbjct: 459 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1027
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H S
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 50/259 (19%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLY----GRVTYNGH 218
+ + I + S I G +T L+GP S LRLY G ++ +GH
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-------LRLYDPASGTISLDGH 437
Query: 219 NMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
++ + P + +SQ + + ++ E +A+ A
Sbjct: 438 DIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA----------------------- 473
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
DP A E Q + V + + I +T+VG++ + +SGGQ++R+
Sbjct: 474 --DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAI 525
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395
L+ + +DE ++ LD+ + + +L + ++ G T++ + + +
Sbjct: 526 ARALLKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHHLSTIKNA-NM 581
Query: 396 IILISDGQIVYQGPREHVL 414
+ ++ G+I G E +L
Sbjct: 582 VAVLDQGKITEYGKHEELL 600
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGR 576
Query: 1018 TVVCTIHQPSI----DIFEAFDELFLLKRGGQE 1046
T + H+ S D+ FD ++++G +
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 41/215 (19%)
Query: 149 IEGLLNSLNILSS--RKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSS 206
I+G L NI S +K + ILKG++ ++ G+ L+G D
Sbjct: 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP- 442
Query: 207 LRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
L G V+ +G ++ RT I +RE + GV S+ +L
Sbjct: 443 --LDGMVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLFA 477
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG-- 324
E + D +D KA +EA+ D+I+K L DT+VG+ RG
Sbjct: 478 TTIAENIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQ 526
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
+SGGQ++R+ LV + +DE ++ LD+ +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T VGD+ + +SGGQ++R+ LV +DE ++ LD+ + + +L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK---A 1217
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
G T I + + D I++I +G++ G + +L
Sbjct: 1218 REGRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 26/234 (11%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFAR 900
+ VS + G AL+G +G GKTT + +LAG + T+G + ++ ++ P K R
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK----YR 75
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVG 960
G QN P +TV+E++ + R + + + R + I +
Sbjct: 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT--- 132
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1019
LS Q++R+ +A LV P ++ DEP S LDA I+ +++ + G T
Sbjct: 133 -----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187
Query: 1020 VCTIHQPSIDIFEA-----FDELFLLKRGG-QEIYVGPLGRHSSHLIKYFEGNP 1067
V H + + A F++ L++ G E+Y P + + F GNP
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP----KNMFVASFIGNP 237
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ++RV LV + DE + LD++ + ++ L G T + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTH 192
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
EA + I + + G++V G + V + P+ VA F+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV--------YDSPKNMFVASFI 234
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGR 576
Query: 1018 TVVCTIHQPSI----DIFEAFDELFLLKRGGQE 1046
T + H+ S D+ FD ++++G +
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 41/215 (19%)
Query: 149 IEGLLNSLNILSS--RKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSS 206
I+G L NI S +K + ILKG++ ++ G+ L+G D
Sbjct: 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP- 442
Query: 207 LRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
L G V+ +G ++ RT I +RE + GV S+ +L
Sbjct: 443 --LDGMVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLFA 477
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG-- 324
E + D +D KA +EA+ D+I+K L DT+VG+ RG
Sbjct: 478 TTIAENIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQ 526
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
+SGGQ++R+ LV + +DE ++ LD+ +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
+T VGD+ + +SGGQ++R+ LV +DE ++ LD+ + + +L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK---A 1217
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
G T I + + D I++I +G++ G + +L
Sbjct: 1218 REGRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHS 912
G AL+G +G GK+T++ +L + + G ITI G + + +N
Sbjct: 444 GQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLE----FLRKN---- 493
Query: 913 PQVTVYESLLYSAWLR--LSPEVDSKTRKMFIXXXXXXXXXXXXR------QALVGLPGV 964
V E L++ + +S + TR+ + + LVG G
Sbjct: 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GRT + H
Sbjct: 554 Q-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGRTTIIIAH 611
Query: 1025 QPSIDIFEAFDELFLLKRGGQEIYVG 1050
+ S I A +L + + GQ + VG
Sbjct: 612 RLST-IRNA--DLIISCKNGQVVEVG 634
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK----QETFARI 901
+S + PG AL+G +G GK+T++ +L + + G I I G K + T ++I
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSP------EVDSKTRKMFIXXXXXXXXXXXXR 955
+ ++ + ++ E+++Y L P +V+ R I
Sbjct: 1156 AIVSQEPTLF--DCSIAENIIYG----LDPSSVTMAQVEEAARLANIHNFIAELPEGF-- 1207
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
+ VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V + +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-DRARE 1265
Query: 1016 GRTVVCTIHQ 1025
GRT + H+
Sbjct: 1266 GRTCIVIAHR 1275
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 104/256 (40%), Gaps = 45/256 (17%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDE 222
+ I ILKG+S + PG+ L+GP D+ L G + +G +
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKT 1145
Query: 223 FVPQRTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
P+ T + I+ + + + ++ E + + V +A+ E+AA +
Sbjct: 1146 LNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV--------TMAQVEEAARL---A 1194
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG--ISGGQRKRVTTGEM 338
++ F+ A EG E T VGD RG +SGGQ++R+
Sbjct: 1195 NIHNFI-AELPEGFE-------------------TRVGD---RGTQLSGGQKQRIAIARA 1231
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
LV + +DE ++ LD+ + + +L + G T I + + D I +
Sbjct: 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR---AREGRTCIVIAHRLNTVMNA-DCIAV 1287
Query: 399 ISDGQIVYQGPREHVL 414
+S+G I+ +G ++
Sbjct: 1288 VSNGTIIEKGTHTQLM 1303
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 314 DTMVGDEMIRG--ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFI 371
+T+VGD RG +SGGQ++R+ LV + +DE ++ LD+ + + +L +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-- 599
Query: 372 HILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+G T I + + D II +GQ+V G ++
Sbjct: 600 -AAKGRTTIIIAHRLSTIRNA-DLIISCKNGQVVEVGDHRALM 640
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARIS-GYCEQN- 908
G +TA++G G GK+TL G + ++G + + Y +K R S G Q+
Sbjct: 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93
Query: 909 DIHSPQVTVYESLLYSAWLRLSPE------VDSKTRKMFIXXXXXXXXXXXXRQALVGLP 962
D +VY+ + + A PE VD+ ++ I + L P
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-------------EHLKDKP 140
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVC 1021
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G T++
Sbjct: 141 -THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 1022 TIHQPSIDIFEAF-DELFLLKRG 1043
H IDI + D +F++K G
Sbjct: 200 ATH--DIDIVPLYCDNVFVMKEG 220
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D+ +S GQ+KRV +LV + +DE + GLD +I+ L + L G T
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GIT 196
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQG-PRE 411
+I D++ ++ +G+++ QG P+E
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGGQR+RV G LV F +DE + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+I + EA L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET--FARISGYCEQNDI 910
G +G +G GK+TL+ ++AG +T +G++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTE 970
P ++V E++ + L + +K I L+ LS
Sbjct: 86 LYPHLSVAENMSFGLKL-------AGAKKEVINQRVNQVAEVLQLAHLLDRKP-KALSGG 137
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1029 DIFEAFDELFLLKRG 1043
+ D++ +L G
Sbjct: 196 EAMTLADKIVVLDAG 210
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGGQR+RV G LV F +DE + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+I + EA L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET--FARISGYCEQNDI 910
G +G +G GK+TL+ ++AG +T +G++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTE 970
P ++V E++ + L + +K I L+ LS
Sbjct: 86 LYPHLSVAENMSFGLKL-------AGAKKEVINQRVNQVAEVLQLAHLLDRKP-KALSGG 137
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1029 DIFEAFDELFLLKRG 1043
+ D++ +L G
Sbjct: 196 EAMTLADKIVVLDAG 210
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAG--RKTTG--YVTGNITISG-----YPKKQETFARI 901
+ G L+G +G GKTT + +AG T G Y+ N+ P K+ A +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQALV 959
Q+ P TVY+++ + LR P E+D + R++ R+
Sbjct: 90 F----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE--- 142
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 143 -------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 38.1 bits (87), Expect = 0.035, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SGGQR+RV G ++ + F DE + LD+ + L++ L G T I +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYV 199
Query: 383 LQPAPEAYDLFDDIILISDGQIVYQGPREHV 413
EA D I + + G++ G + V
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ++RV+ L DE ++ LD +++ ++Q G T++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHV 413
A + +I + G+I +G E V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLA--GRKTTGYV-TGNITISGYPKKQETFARIS--GYC 905
+ G ++MG +G+GK+T+++++ + T G V NI + + T R G+
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVN 965
Q P +T E++ + + + R+ + N
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEERR----KRALECLKMAELEERFANHKPN 144
Query: 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 1024
LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G+TVV H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 1025 QPSIDIFEAFDELFLLKRGGQE 1046
I++ + + LK G E
Sbjct: 205 --DINVARFGERIIYLKDGEVE 224
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-----------YPKKQETFA 899
+ G L+G +G GKTT + ++AG + G I I P K A
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIXXXXXXXXXXXXRQA 957
+ Q+ P +TVY+++ + LR P E+D + R++ R+
Sbjct: 85 MVF----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE- 139
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 140 ---------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SGGQR+RV G +V Q F MDE + LD+ ++ L++ L G T I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYV 196
Query: 383 LQPAPEAYDLFDDIILISDGQIVYQGPREHV 413
EA + D I +++ G + G + V
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGGQR+RV G LV F +D+ + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+I + EA L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET--FARISGYCEQNDI 910
G +G +G GK+TL+ ++AG +T +G++ I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTE 970
P ++V E++ + L + +K I L+ LS
Sbjct: 86 LYPHLSVAENMSFGLKL-------AGAKKEVINQRVNQVAEVLQLAHLLDRKP-KALSGG 137
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1029 DIFEAFDELFLLKRG 1043
+ D++ +L G
Sbjct: 196 EAMTLADKIVVLDAG 210
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLA--GRKTTGYV-TGNITISGYPKKQETFARI 901
+V+ + G ++MG +G+GK+T+++++ + T G V NI + + T R
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 902 S--GYCEQNDIHSPQVTVYES----LLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXR 955
G+ Q P +T E+ L++ +S E + + R +
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-ERRKRALECLKMAELEERFANH 141
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1014
+ N LS Q++R+ IA L NP II D+PT LD++ +M+ ++ +
Sbjct: 142 KP-------NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 1015 TGRTVVCTIHQPSIDIF 1031
G+TVV H ++ F
Sbjct: 195 DGKTVVVVTHDINVARF 211
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 39/207 (18%)
Query: 211 GRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELA 268
G + +GH++ E+ R + +VH+ TV +A+ A
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-----------------A 440
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328
R E+ + + E + D+I K +D DT++G+ + +SGG
Sbjct: 441 RTEQ------------YSREQIEEAARMAYAMDFINK---MDNGLDTVIGENGVL-LSGG 484
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPE 388
QR+R+ L+ + +DE ++ LD+ + I +L + + L +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544
Query: 389 AYDLFDDIILISDGQIVYQGPREHVLE 415
A D+I+++ DG IV +G +LE
Sbjct: 545 A----DEIVVVEDGVIVERGTHNDLLE 567
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 13/195 (6%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCE--QNDI 910
G AL+G +G+GK+T+ ++ + G I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNG--LS 968
H TV ++ Y+ + S E + +M L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARM----AYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 1029 DIFEAFDELFLLKRG 1043
E DE+ +++ G
Sbjct: 541 -TIEKADEIVVVEDG 554
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGY----VTGNITISGY---PKKQETFARISGYC 905
G AL+G TG+GK+T+ +L Y G+I I G + + I G
Sbjct: 46 GTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIV 98
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVN 965
Q+ I + Y ++LY EV T+ + +VG G+
Sbjct: 99 PQDTILFNETIKY-NILYGKLDATDEEVIKATKSAQLYDFIEALPKKW--DTIVGNKGMK 155
Query: 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+
Sbjct: 156 -LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHR 213
Query: 1026 PSIDIFEAFDELFLLKRG 1043
S + + + LL +G
Sbjct: 214 LS--TISSAESIILLNKG 229
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
DT+VG++ ++ +SGG+R+R+ L+ + DE ++ LDS T + ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL----FQKAVED 200
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEF 416
LR + ++ + IIL++ G+IV +G + +L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTI 1023
N LS Q++R+ IA L NP II DEPT LD++ + + ++ + G+TVV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 1024 HQPSIDIFEAFDELFLLKRGGQE 1046
H I++ + + LK G E
Sbjct: 204 H--DINVARFGERIIYLKDGEVE 224
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK---KQETFARIS 902
VS + G AL+G +G+GK+T+ ++ + +G+I + G+ K R
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPE-VDSKTRKMFIXXXXXXXXXXXXRQALVGL 961
QN +H T+ ++ Y+A + E ++ R+ Q L +
Sbjct: 420 ALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ-----AHAMEFIENMPQGLDTV 473
Query: 962 PGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1019
G NG LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +TV
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNKTV 532
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIK 1061
+ H+ S E DE+ ++ G EI GRH+ L +
Sbjct: 533 LVIAHRLS--TIEQADEILVVDEG--EII--ERGRHADLLAQ 568
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
DT++G+ +SGGQR+RV L+ A +DE ++ LD+ + I +L +
Sbjct: 471 DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---- 525
Query: 374 LRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
L+ + ++ + D+I+++ +G+I+ +G +L
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%)
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS-- 902
++ + G A +G++G GK+TL++++ + +G I I G+ K +
Sbjct: 359 DINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 903 -GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL 961
G +Q++I TV E++L EV + VG
Sbjct: 417 IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAK--MANAHDFIMNLPQGYDTEVGE 473
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1021
GV LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + + RT +
Sbjct: 474 RGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLI 531
Query: 1022 TIHQPS 1027
H+ S
Sbjct: 532 VAHRLS 537
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 306 ILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVN 365
I+ L DT VG+ ++ +SGGQ++R++ + + +DE ++ LD + +
Sbjct: 460 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE----S 514
Query: 366 SLRQFIHILRG--TTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+++ + +L TTLI + + + D I++I +G IV G ++
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITHA--DKIVVIENGHIVETGTHRELI 563
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 48/274 (17%)
Query: 149 IEGLLN--SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSS 206
+EGL+ ++ + + +L+G++ +RPG +T L+GP S +
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 207 LRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
G++ +G + PQ Y+ + +G+ E F Q
Sbjct: 71 ---GGQLLLDGKPL----PQYEHRYLHRQVAAVGQ----EPQVFGRSLQ----------- 108
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326
A G+ P ++ AA G + I GL DT V DE +S
Sbjct: 109 ---ENIAYGLTQKPTMEEITAAAVKSGAHSF--------ISGLPQGYDTEV-DEAGSQLS 156
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSL-----RQFIHILRGTTLIS 381
GGQR+ V L+ +D+ ++ LD+++ Q+ L R +L T +S
Sbjct: 157 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 216
Query: 382 LLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
L++ A D I+ + G I G + ++E
Sbjct: 217 LVEQA-------DHILFLEGGAIREGGTHQQLME 243
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 45/216 (20%)
Query: 850 FRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARISGYCEQN 908
RPG +TAL+G G+GK+T+ +L + TG G + + G P Q E
Sbjct: 40 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDGKPLPQY---------EHR 87
Query: 909 DIH--------SPQV---TVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQA 957
+H PQV ++ E++ Y T+K +
Sbjct: 88 YLHRQVAAVGQEPQVFGRSLQENIAYGL-----------TQKPTMEEITAAAVKSGAHSF 136
Query: 958 LVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
+ GLP + LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044
+ + + V I Q + + E D + L+ G
Sbjct: 197 LYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 17/214 (7%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCE--QNDI 910
G AL+G +G+GK+T+ ++ + G+I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNG--LS 968
H TV ++ Y+ S E + +M L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARM----AYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 1029 DIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKY 1062
E DE+ +++ G + G HS L ++
Sbjct: 541 -TIEQADEIVVVEDG----IIVERGTHSELLAQH 569
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 39/206 (18%)
Query: 211 GRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELA 268
G + +GH++ E+ R + +VH+ TV +A+ A
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-----------------A 440
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328
R E+ + + E + D+I K +D DT++G+ + +SGG
Sbjct: 441 RTEE------------YSREQIEEAARMAYAMDFINK---MDNGLDTIIGENGVL-LSGG 484
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPE 388
QR+R+ L+ + +DE ++ LD+ + I +L + + L +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 389 AYDLFDDIILISDGQIVYQGPREHVL 414
A D+I+++ DG IV +G +L
Sbjct: 545 A----DEIVVVEDGIIVERGTHSELL 566
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 13/185 (7%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLA--GRKTTGYVTGNITISGYPKKQETFA---R 900
+S + + G +++G +G+GK+TL+ +L T G V Y ++E R
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVG 960
G+ Q P++T E+++ P+ ++K R ++ +
Sbjct: 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY--- 139
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
LS +++R+ IA L P ++F DEPT LD+ VM + G ++V
Sbjct: 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 1021 CTIHQ 1025
H+
Sbjct: 195 MVTHE 199
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 294 QEASVVTDYILKILGLDVCADTMVGDEMIRG---ISGGQRKRVTTGEMLVGPAQAFFMDE 350
+EA +Y+L LGL GD++ R +SGG+++RV L F DE
Sbjct: 115 KEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 351 ISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
+ LDS+ T ++++ F+ I G T I ++ E +L + + DG++V
Sbjct: 167 PTGNLDSANTKRVMDI---FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 858 LMGVTGAGKTTLMDVLAG--RKTTGYVTGN-ITISGYPKKQETFARISGYCEQNDIHSPQ 914
L+G TGAGK+ ++++AG + G V N I+ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQRKR 974
++VY ++ Y LR V+ R + + A LS +R+R
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134
Query: 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGG+R+RV LV + +DE + +D T ++ LR F+ ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 385 PAPEAYDLFDDIILISDGQIVYQG 408
EA L D++ ++ +G+IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS- 902
VS PG AL+G +GAGK+T++ +L + +G I I G Q T A +
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 903 --GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVG 960
G Q+ + T+ +++ Y + EV++ + I Q VG
Sbjct: 129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ--VG 185
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 186 ERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTI 243
Query: 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHL 1059
H+ S + D++ ++K G + GRH + L
Sbjct: 244 VVAHRLSTVV--NADQILVIKDG----CIVERGRHEALL 276
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL 374
T VG+ ++ +SGG+++RV ++ +DE ++ LD+S I SL +
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 375 RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+ L A D I++I DG IV +G E +L
Sbjct: 241 TTIVVAHRLSTVVNA----DQILVIKDGCIVERGRHEALL 276
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 32/219 (14%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
+ VS + G +T ++G G+GK+TL++V+ G G + + A +
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYH 81
Query: 904 YCEQNDIHSPQ----VTVYESLL---------------YSAWLRLSPEVDSKTRKMFIXX 944
Y +PQ +TV E+LL Y W+ P+ + K F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAFKIL 138
Query: 945 XXXXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1004
R+A LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 139 EFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 1005 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ V G T + H+ I + D L+++ G
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 35/248 (14%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRT 228
L GVS + G +TL++GP S + GRV + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 229 AAY----ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
Y Q + EMTV E L C G P +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLNSL 118
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
F K + +E IL+ L L D G+ +SGGQ K V G L+ +
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404
MDE G+ I N + + +G T + + + D + ++ +GQI
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLEL--KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
Query: 405 VYQGPREH 412
+ +G E
Sbjct: 232 IAEGRGEE 239
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
+ LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G T+V H
Sbjct: 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
Query: 1025 Q 1025
+
Sbjct: 218 E 218
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ +RV L + DE ++ LD ++++ ++Q + G T++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437
A ++ D ++ + G I+ +G E + F P+ + FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
+ LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G T+V H
Sbjct: 137 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 196
Query: 1025 Q 1025
+
Sbjct: 197 E 197
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ +RV L + DE ++ LD ++++ ++Q + G T++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437
A ++ D ++ + G I+ +G E + F P+ + FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 32/219 (14%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
+ VS + G +T ++G G+GK+TL++V+ G G + + A +
Sbjct: 24 DGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYH 81
Query: 904 YCEQNDIHSPQ----VTVYESLL---------------YSAWLRLSPEVDSKTRKMFIXX 944
Y +PQ +TV E+LL Y W+ P+ + K F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAFKIL 138
Query: 945 XXXXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1004
R+A LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 139 EFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 1005 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ V G T + H+ I + D L+++ G
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 303 ILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQ 362
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 363 IVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREH 412
I N + + +G T + + + D + ++ +GQI+ +G E
Sbjct: 192 IFNHVLEL--KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY------PKKQETFARISGYCEQNDIH 911
++G TGAGKT ++++AG +G I + G P+K + + QN
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHDI-----AFVYQNYSL 83
Query: 912 SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQ 971
P + V ++L + +R+ D K ++ R L LS +
Sbjct: 84 FPHMNVKKNLEFG--MRMKKIKDPK--RVLDTARDLKIEHLLDRNPLT-------LSGGE 132
Query: 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
++R+ +A LV NP I+ +DEP S LD R T + R ++ +H+
Sbjct: 133 QQRVALARALVTNPKILLLDEPLSALDPR-----------TQENAREMLSVLHK 175
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGG+++RV LV + +DE + LD T + + +H T++ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-ENAREMLSVLHKKNKLTVLHITH 186
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLE------FFEFMGFK 423
EA + D I ++ DG+++ G E + E F+GF+
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFE 231
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 1027 SIDIFEAFDELFLLKRGGQ 1045
+ D + +L++G +
Sbjct: 201 ET-VINHVDRVVVLEKGKK 218
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGG+++RV ++V +DE GLD ++ + ++ + G T+I +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFE 418
+ D ++++ G+ V+ G R LE ++
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGN-ITISGYPKKQETFARISGYCEQND 909
G + L+G GAGKTT + +AG R G + N I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 910 IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLST 969
I P++TVYE+L A+ R E + + ++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRDLEWIF------SLFPRLKERLKQLGGT--LSG 142
Query: 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDS---STTFQIVNSLRQFIHILRGTTLIS 381
+SGG+++ + G L + DE S GL S F+++ + Q GTT++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILL 194
Query: 382 LLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
+ Q A A + ++ GQIV +G +L+
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 1027 SIDIFEAFDELFLLKRGGQ 1045
+ D + +L++G +
Sbjct: 199 ET-VINHVDRVVVLEKGKK 216
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGG+++RV ++V +DE GLD ++ + ++ + G T+I +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFE 418
+ D ++++ G+ V+ G R LE ++
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 94/257 (36%), Gaps = 43/257 (16%)
Query: 810 FEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXNSVS---GAFRPGVLTALMGVTGAGK 866
F P+ + F ++ VD+ +E + G R G + ++G G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 867 TTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYS 924
TT + +LAG T G V ++T++ P Q A G TVYE
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYEL---- 437
Query: 925 AWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL--PGVNGLSTEQRKRLTIAVELV 982
LS SK F ++ L V LS + +R+ IA L+
Sbjct: 438 ----LSKIDSSKLNSNFYKTELLKPL------GIIDLYDRNVEDLSGGELQRVAIAATLL 487
Query: 983 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 543
Query: 1043 GGQEIYVGPLGRHSSHL 1059
++ G GRH L
Sbjct: 544 ----VFEGEPGRHGRAL 556
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK------QETFARISGY 904
+ G++ ++G G GKTT + +LAG+ N + + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 173
Query: 905 CEQNDIHSPQ-VTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
E + PQ V + + L +VD + K R+
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-EVGKFEEVVKELELENVLDRE------- 225
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
Query: 1024 HQPSI 1028
H ++
Sbjct: 286 HDLAV 290
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGG+ +RV L+ A + +DE S LD + ++R + T
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 379 LISLLQPAPEAYDLFDDIILI---SDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435
L+ + D+++I SD IV++G MG R+G+ FL
Sbjct: 526 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 570
Query: 436 EV--TSRKDQE--QYWANKE 451
V T R+D + + ANKE
Sbjct: 571 SVGITFRRDPDSGRPRANKE 590
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGG+ +RV L+ A +F DE S+ LD ++ +R+ + G
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 280
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPE--RKGVADFLQ 435
++ +++ D D+I +VY P + + F P+ R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 326
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQETFARISGYCEQNDI 910
PG +TAL+G G+GK+T+ +L + TG G + + G P Q + + +
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ---------YDHHYL 91
Query: 911 HSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLP------- 962
H+ V E LL+ R + TR + + G P
Sbjct: 92 HTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 963 --GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1019
N LS QR+ + +A L+ P ++ +D+ TS LDA V R + + + RTV
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTV 210
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRG 1043
+ HQ + + E + LK G
Sbjct: 211 LLITHQ--LSLAERAHHILFLKEG 232
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 94/253 (37%), Gaps = 40/253 (15%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFV 224
++ +L+G++ + PG++T L+GP S + G+V +G + ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQY- 86
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
H +H + VG + R A G+ P ++
Sbjct: 87 --------DHHYLH-------------TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
A G D+I G DT VG E +SGGQR+ V L+ +
Sbjct: 126 ITAVAMESGAH-----DFIS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI--SLLQPAPEAYDLFDDIILISDG 402
+D+ ++ LD+ ++ L + T L+ L A A+ I+ + +G
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAH----HILFLKEG 232
Query: 403 QIVYQGPREHVLE 415
+ QG ++E
Sbjct: 233 SVCEQGTHLQLME 245
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK------QETFARISGY 904
+ G + ++G G GK+T + +LAG+ N + G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 905 CEQNDIHSPQ-VTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
E + PQ V + + + L + D +T K+ R+
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKLEEVVKALELENVLERE------- 155
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 1024 HQPSI 1028
H ++
Sbjct: 216 HDLAV 220
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGG+ +RV L+ A + +DE S LD + ++R T
Sbjct: 396 DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTA 455
Query: 379 LI 380
L+
Sbjct: 456 LV 457
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 38/222 (17%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT---GNITISGYPKKQETFAR 900
+ VS + G +T ++G G+GK+TL++V+ TG++ G + + A
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVI-----TGFLKADEGRVYFENKDITNKEPAE 78
Query: 901 ISGYCEQNDIHSPQ----VTVYESLL---------------YSAWLRLSPEVDSKTRKMF 941
+ Y +PQ +TV E+LL Y W+ P+ + K F
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAF 135
Query: 942 IXXXXXXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
R+A LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 KILEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 1002 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
A + V G T + H+ I + D L+++ G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 57/251 (22%), Positives = 90/251 (35%), Gaps = 43/251 (17%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRT 228
L GVS + G +TL++GP S + GRV + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 229 AAY----ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
Y Q + EMTV E L ++ E+ E P +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGES-------PLNSL 118
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
F K + +E IL+ L L D G+ +SGGQ K V G L+ +
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHIL----RGTTLISLLQPAPEAYDLFDDIILIS 400
MD+ G+ I N H+L +G T + + + D + ++
Sbjct: 174 MIVMDQPIAGVAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
Query: 401 DGQIVYQGPRE 411
+GQI+ +G E
Sbjct: 228 NGQIIAEGRGE 238
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 94/257 (36%), Gaps = 43/257 (16%)
Query: 810 FEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXNSVS---GAFRPGVLTALMGVTGAGK 866
F P+ + F ++ VD+ +E + G R G + ++G G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 867 TTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYS 924
TT + +LAG T G V ++T++ P Q A G TVYE
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYEL---- 423
Query: 925 AWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL--PGVNGLSTEQRKRLTIAVELV 982
LS SK F ++ L V LS + +R+ IA L+
Sbjct: 424 ----LSKIDSSKLNSNFYKTELLKPL------GIIDLYDRNVEDLSGGELQRVAIAATLL 473
Query: 983 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 529
Query: 1043 GGQEIYVGPLGRHSSHL 1059
++ G GRH L
Sbjct: 530 ----VFEGEPGRHGRAL 542
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK------QETFARISGY 904
+ G++ ++G G GKTT + +LAG+ N + + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 159
Query: 905 CEQNDIHSPQ-VTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
E + PQ V + + L +VD + K R+
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-EVGKFEEVVKELELENVLDRE------- 211
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
++ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
Query: 1024 HQPSI 1028
H ++
Sbjct: 272 HDLAV 276
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGG+ +RV L+ A + +DE S LD + ++R + T
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 379 LISLLQPAPEAYDLFDDIILI---SDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435
L+ + D+++I SD IV++G MG R+G+ FL
Sbjct: 512 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 556
Query: 436 EV--TSRKDQE--QYWANKE 451
V T R+D + + ANKE
Sbjct: 557 SVGITFRRDPDSGRPRANKE 576
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D + +SGG+ +RV L+ A +F DE S+ LD ++ +R+ + G
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 266
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPE--RKGVADFLQ 435
++ +++ D D+I +VY P + + F P+ R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 312
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 21/191 (10%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY------PKKQETFARISGY 904
PG + A+MG G+GK+TL LAGR+ G + G P+ + +
Sbjct: 25 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 84
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLP-- 962
Q + P V+ + L +A + +T F + AL+ +P
Sbjct: 85 --QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 136
Query: 963 ----GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
VN G S ++KR I V P + +DE SGLD A +V V + D R
Sbjct: 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 196
Query: 1018 TVVCTIHQPSI 1028
+ + H I
Sbjct: 197 SFIIVTHYQRI 207
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY------PKKQETFARISGY 904
PG + A+MG G+GK+TL LAGR+ G + G P+ + +
Sbjct: 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 103
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLP-- 962
Q + P V+ + L +A + +T F + AL+ +P
Sbjct: 104 --QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 155
Query: 963 ----GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
VN G S ++KR I V P + +DE SGLD A +V V + D R
Sbjct: 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 215
Query: 1018 TVVCTIH 1024
+ + H
Sbjct: 216 SFIIVTH 222
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 41/218 (18%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG---YPKKQETFAR 900
N +S + PG + ++G +G GKTTL+ LAG + +G I++SG + K R
Sbjct: 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLPVR 78
Query: 901 IS--GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQAL 958
GY Q + P +TVY ++ Y + R +A+
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI----------------EAM 122
Query: 959 VGLPGVNGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
+ L G++ L+ L+ +A L +P +I +DEP S LD + + R +R
Sbjct: 123 LELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIR 178
Query: 1011 NTV-----DTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ G++ V H + + D + ++K+G
Sbjct: 179 EDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 28/198 (14%)
Query: 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--GYVTGNITISGYPKKQETFARISGY 904
+G + G + ++G G GKTT +L G T G VT I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGV 964
+Q ++ + ++L S+W + T+++ + V
Sbjct: 347 VQQYLENASK----DALSTSSWF-----FEEVTKRLNLHRLLE--------------SNV 383
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI- 1023
N LS + ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 1024 HQPSIDIFEAFDELFLLK 1041
H SI + A D + + K
Sbjct: 444 HDLSIHDYIA-DRIIVFK 460
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 100/249 (40%), Gaps = 45/249 (18%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG---YCEQ 907
+ + ++G G GKTT++ +LAG + N + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 908 NDIHSPQVTVYESLLY----SAWLR-----LSPEVDSKTRKMFIXXXXXXXXXXXXRQAL 958
+++S ++ + + Y S +L+ + ++D + +K + + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV-------------KEL 125
Query: 959 VGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
+ + + N LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 1014 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIK 1073
+ V+ H + + + +L + G +Y GR S K + G++
Sbjct: 186 -KNKYVIVVDH--DLIVLDYLTDLIHIIYGESSVY----GRVS----KSYAARVGINNFL 234
Query: 1074 NGYNPATWM 1082
GY PA M
Sbjct: 235 KGYLPAENM 243
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL 383
+SGGQ++RV L + DE ++ LD +TT I+ L+ L G T++ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLIT 198
Query: 384 QPAPEAYDLFDDIILISDGQIVYQ 407
+ D + +IS+G+++ Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 21/222 (9%)
Query: 850 FRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP--KKQETFARISGYCEQ 907
+PG AL+G TG+GKTT++++L + G I + G K + + R S
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435
Query: 908 NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNG- 966
D TV E+L Y +P + K + + NG
Sbjct: 436 QDTILFSTTVKENLKYG-----NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE 490
Query: 967 -LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T + H+
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR 549
Query: 1026 PSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIK---YFE 1064
++ + D + +L+ G + +G+H + K Y+E
Sbjct: 550 --LNTIKNADLIIVLRDG----EIVEMGKHDELIQKRGFYYE 585
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 127/317 (40%), Gaps = 50/317 (15%)
Query: 101 LLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILS 160
L +L N+F+ + +++ E FE L +E E + P + G + N+
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILDLEEE-----KDDPDAVELRE--VRGEIEFKNVWF 362
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNM 220
S K +LK ++ I+PG+ L+GP S D G++ +G ++
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDI 419
Query: 221 DEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+ R++ I D + TV+E L + G+ E + E A+ +
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG----NPGATDEEIKEAAKLTHS----- 470
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
D F+K EG E +V+TD G+++ S GQR+ +
Sbjct: 471 ----DHFIKHLP-EGYE-TVLTDN---------------GEDL----SQGQRQLLAITRA 505
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
+ + +DE ++ +D+ T I ++ + + + L A D II+
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA----DLIIV 561
Query: 399 ISDGQIVYQGPREHVLE 415
+ DG+IV G + +++
Sbjct: 562 LRDGEIVEMGKHDELIQ 578
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 7/161 (4%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG---YPKKQETFARISGYCE-QN 908
G + ALMG GAGK+TL +LAG G I + G + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLS 968
+ P VT+ L + +L EV F ++ + G S
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDESYLSRYLNEGFS 145
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
++KR I LV P+ +DE SGLD A +V R V
Sbjct: 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQI---VNSLR----QFIHILR 375
G SGG++KR ++LV +DE +GLD + VN++R + I
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
Query: 376 GTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEF----FEFMGFKCPE 426
+++ +QP D + ++ DG++V G E LE +E++ K E
Sbjct: 202 YQRILNYIQP--------DKVHVMMDGRVVATGGPELALELEAKGYEWLKEKVKE 248
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1025
LS QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQ
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 1026 PSIDIFEAFDELFLLKR 1042
P+ + A L L K+
Sbjct: 189 PNQVVAIANKTLLLNKQ 205
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D +SGGQ++RV L + D+ ++ LD +TT I+ L+ I+ G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLGLT 216
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVT 438
++ + + D + +IS+G+++ Q V F P+ F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 439 SRKDQEQYWAN-KEEPY 454
E Y + EP+
Sbjct: 269 HLDIPEDYQERLQAEPF 285
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 23/235 (9%)
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-YPKK----QETFARISGYCEQNDIHS 912
L G+ GAGKTTL+++L + +G + + G P K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 913 PQV--TVYESLLYSAWLRLS--PEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLS 968
Q V + ++ A+ + ++D + R +Q + LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQY------IGYLS 163
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLD--ARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
T +++R+ IA L P ++ +DEP +GLD AR + + + + + H
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFI 223
Query: 1027 SIDIFEAFDELFLLKRGGQEIYVGPLGR--HSSHLIKYFEGNPGVSKIKNGYNPA 1079
+I F ++ LLK GQ I G + S + ++F+ N V + N ++ A
Sbjct: 224 E-EITANFSKILLLKD-GQSIQQGAVEDILTSENXSRFFQKNVAVQRWNNRFSXA 276
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 303 ILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQ 362
+LK++G A +G +S G+++RV L G Q +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 363 IVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+++ L I + E F I+L+ DGQ + QG E +L
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
+ V+ + +PG L A++G TG+GK+TLM+++ + G + + + + G
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLP- 962
+ PQ TV S L+ E D+ ++ ++ LP
Sbjct: 418 HISA----VPQETVLFSGTIKENLKWGRE-DATDDEIV-----EAAKIAQIHDFIISLPE 467
Query: 963 --------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL 383
+SGGQ++RV L + D+ ++ LD +TT I+ L+ L G T++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLIT 221
Query: 384 QPAPEAYDLFDDIILISDGQIVYQ 407
+ D + +IS+G+++ Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQ 245
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQETFARISGYCEQNDI 910
PG +TAL+G G+GK+T+ +L + TG G + + G P Q + + +
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ---------YDHHYL 91
Query: 911 HSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLP------- 962
H+ V E LL+ R + TR + + G P
Sbjct: 92 HTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 963 --GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1019
N LS QR+ + +A L+ P ++ +D TS LDA V R + + + RTV
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRG 1043
+ Q + + E + LK G
Sbjct: 211 LLITQQ--LSLAERAHHILFLKEG 232
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 46/256 (17%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFV 224
++ +L+G++ + PG++T L+GP S + G+V +G + ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQY- 86
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
H +H + VG + R A G+ P ++
Sbjct: 87 --------DHHYLH-------------TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
A G D+I G DT VG E +SGGQR+ V L+ +
Sbjct: 126 ITAVAMESGAH-----DFIS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIH-----ILRGTTLISLLQPAPEAYDLFDDIILI 399
+D ++ LD+ ++ L + +L T +SL + A I+ +
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 400 SDGQIVYQGPREHVLE 415
+G + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQETFARISGYCEQNDI 910
PG +TAL+G G+GK+T+ +L + TG G + + G P Q + + +
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ---------YDHHYL 91
Query: 911 HSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGV----- 964
H+ V E LL+ R + TR + + G P
Sbjct: 92 HTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 965 ----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1019
N L+ QR+ + +A L+ P ++ +D TS LDA V R + + + RTV
Sbjct: 151 GETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRG 1043
+ Q + + E + LK G
Sbjct: 211 LLITQQ--LSLAERAHHILFLKEG 232
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
N ++ + G L A++G G GK++L+ L V G++ I G A I
Sbjct: 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKGSVAYVPQQAWI-- 77
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
QND ++ E++L+ L P S + + + +G G
Sbjct: 78 ---QND------SLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTE--IGEKG 125
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
VN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 126 VN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL 374
T +G++ + +SGGQ++RV+ + A + D+ + +D+ I ++ +L
Sbjct: 119 TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 375 RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL----EFFEFM 420
+ T I L+ + D II++S G+I G + +L F EF+
Sbjct: 178 KNKTRI-LVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 967 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1024 HQPSIDIFEAFDELFLL-----KRGGQEIYVG 1050
H ++D+ + D + L RGGQ + VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 967 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1024 HQPSIDIFEAFDELFLL-----KRGGQEIYVG 1050
H ++D+ + D + L RGGQ + VG
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 967 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1024 HQPSIDIFEAFDELFLL-----KRGGQEIYVG 1050
H ++D+ + D + L RGGQ + VG
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 37.4 bits (85), Expect = 0.055, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 13/205 (6%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY----VTGNITISGYPKKQETFA 899
N VS G + A++G GAGK+TL+ +L G + + + G S PK A
Sbjct: 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---ALA 84
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALV 959
R Q + +V E + + +P S+ R+ ++
Sbjct: 85 RTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1018
L G + + L + P +F+DEPTS LD +R +R T
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLA 200
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRG 1043
V C +H ++ A D + LL +G
Sbjct: 201 VCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.4 bits (85), Expect = 0.066, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 34/193 (17%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYC 905
+SG R G + L+G GAGK+TL+ AG T+G G+I +G P + + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 906 EQNDIHSPQVTVYESLLYSA--WLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
+H ++ ++ ++ W L+ KTR + + L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA----------GALALDD 118
Query: 964 VNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1011
G ST QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 1012 TVDTGRTVVCTIH 1024
G +V + H
Sbjct: 179 LCQQGLAIVXSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 36.6 bits (83), Expect = 0.096, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 34/193 (17%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYC 905
+SG R G + L+G GAGK+TL+ AG T+G G+I +G P + + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 906 EQNDIHSPQVTVYESLLYSA--WLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
+H ++ ++ ++ W L+ KTR + + L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA----------GALALDD 118
Query: 964 VNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1011
G ST QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 1012 TVDTGRTVVCTIH 1024
G +V + H
Sbjct: 179 LSQQGLAIVXSSH 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 31/196 (15%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQN-- 908
RPG + L+G G GK+T + +LAG++ P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR----FDDPPEWQEIIKYFRGSELQNYF 156
Query: 909 ------DIHS----------PQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXX 952
DI + P+ L+L E + K +I
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 953 XXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
+ LS + +R I + V + DEP+S LD + + +R+
Sbjct: 217 R---------DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 1013 VDTGRTVVCTIHQPSI 1028
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 28/169 (16%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARI 901
N G F + +MG G GKTTL+ +LAG + G + +S P Q+ +
Sbjct: 369 NVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP--QKIAPKF 426
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL 961
G Q L + K R F+ R +
Sbjct: 427 PGTVRQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D+ ++ +SGG+ +RV L PA + +DE S LDS +R+FI + T
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 379 LI 380
I
Sbjct: 522 FI 523
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 34/193 (17%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYC 905
+SG R G + L+G GAGK+TL+ +AG T+G G+I +G P + + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 906 EQNDIHSPQVTVYESLLYSA--WLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
+H ++ ++ ++ W L+ KTR + + L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA----------GALALDD 118
Query: 964 VNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1011
G ST QR RL V + ANP+ ++ +D+P + LD + + + +
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 1012 TVDTGRTVVCTIH 1024
G +V + H
Sbjct: 179 LSQQGLAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 34/193 (17%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYC 905
+SG R G + L+G GAGK+TL+ +AG T+G G+I +G P + + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 906 EQNDIHSPQVTVYESLLYSA--WLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPG 963
+H ++ ++ ++ W L+ KTR + + L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA----------GALALDD 118
Query: 964 VNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1011
G ST QR RL V + ANP+ ++ +D+P LD + + + +
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 1012 TVDTGRTVVCTIH 1024
G +V + H
Sbjct: 179 LSQQGLAIVMSSH 191
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 323 RGISGGQRKRVTT------GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376
RG+SGG+R ++ E+ G AFF+DE + LD+ +I + L++ + +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 377 TTLISLLQPAPEAYD 391
I+ + EA+D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 323 RGISGGQRKRVTT------GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376
RG+SGG+R ++ E+ G AFF+DE + LD+ +I + L++ + +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 377 TTLISLLQPAPEAYD 391
I+ + EA+D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP-KKQETFARISGYCEQNDIHSPQVT 916
++G G+GKTTL+ ++G +GNI I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 917 VYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXX-XXXXRQALVGLPGVNGLSTEQRKRL 975
V ++Y L E+ R +F+ R+ L LS Q +
Sbjct: 90 V-NDIVY-----LYEELKGLDRDLFLEMLKALKLGEEILRRKLY------KLSAGQSVLV 137
Query: 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAF 1034
++ L + P I+ +DEP +DA ++ R ++ + G+ + H+ +++++ +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDMLNLYKEY 194
Query: 1035 DELFLL 1040
FL+
Sbjct: 195 KAYFLV 200
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 990 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 967 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 1024 HQPSIDIFEAFDELFLL-KRGGQE 1046
H ++D+ + D + L GG+E
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKE 887
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 283 DVFMKAAATEGQEASVVTDYI---LKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
+V MK A GQ + I +LGLD +V IRG+SGGQ+ ++
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
+DE + LD + + +L++F G +I + A +L +++ +
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVII-ITHSAEFTKNLTEEVWAV 971
Query: 400 SDGQIVYQG 408
DG++ G
Sbjct: 972 KDGRMTPSG 980
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 967 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1024 HQ 1025
H+
Sbjct: 791 HK 792
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 323 RGISGGQRKRVTT------GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376
RG+SGG+R ++ E+ G AFF+DE + L + +I + L++ + +
Sbjct: 295 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIASVLKELERLNKV 354
Query: 377 TTLISLLQPAPEAYD 391
I+ + EA+D
Sbjct: 355 IVFITCDREFSEAFD 369
>pdb|1NEK|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With Carboxin
Bound
pdb|2WDQ|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With Carboxin
Bound
pdb|2WDQ|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With Carboxin
Bound
pdb|2WDV|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An Empty
Quinone-Binding Pocket
pdb|2WDV|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An Empty
Quinone-Binding Pocket
pdb|2WDV|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An Empty
Quinone-Binding Pocket
pdb|2WDR|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU5|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 129
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1158 PYTAV----RFLSTTITSLTFGAMFWDMGTKMTKQQDLFNA---MGSMYTAVLFIGILNA 1210
P TA+ +S IT + G + W +GT ++ + A MGS + + GIL A
Sbjct: 21 PITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA 80
Query: 1211 VAVQPVVAIER 1221
+A VV I
Sbjct: 81 LAYHVVVGIRH 91
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 967 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1023
LS + +R+ +A EL + + +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1024 HQPSIDIFEAFD 1035
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 849 AFRPGVLTALMGVTGAGKTTLM-DVLA 874
+F GVLT++ GV+G+GK+TL+ D+LA
Sbjct: 664 SFPLGVLTSVTGVSGSGKSTLVNDILA 690
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 1014 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIK 1073
+ G + +QP + EA + F L RGG I+VGP G H + P IK
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGG--IFVGPCGNKVDHAVAAVGYGPNYILIK 174
Query: 1074 NGY 1076
N +
Sbjct: 175 NSW 177
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With
Fragments Of The Trypanosoma Brucei Cysteine Protease
Inhibitor Icp
Length = 212
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1024 HQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGY 1076
+QP + EA + F L RGG I+VGP G H + P IKN +
Sbjct: 127 NQPVSVVLEAAGKDFQLYRGG--IFVGPCGNKVDHAVAAVGYGPNYILIKNSW 177
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1024 HQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGY 1076
+QP + EA + F L RGG I+VGP G H + P IKN +
Sbjct: 127 NQPVSVVLEAAGKDFQLYRGG--IFVGPCGNKVDHAVAAVGYGPNYILIKNSW 177
>pdb|2WU2|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
Length = 129
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1158 PYTAVRFL----STTITSLTFGAMFWDMGTKMTKQQDLFNA---MGSMYTAVLFIGILNA 1210
P TA+ + S IT + G + W +GT ++ + A MGS + + GIL A
Sbjct: 21 PITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA 80
Query: 1211 VAVQPVVAIER 1221
+A VV I
Sbjct: 81 LAYMVVVGIRH 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,249,583
Number of Sequences: 62578
Number of extensions: 1472160
Number of successful extensions: 3288
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3005
Number of HSP's gapped (non-prelim): 290
length of query: 1412
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1301
effective length of database: 8,027,179
effective search space: 10443359879
effective search space used: 10443359879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)