Query 000576
Match_columns 1412
No_of_seqs 521 out of 5205
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:40:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000576.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_347-351//hhsearch_pdb/000576hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 680.3 54.1 789 118-1061 414-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 612.3 59.8 805 117-1052 385-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 454.3 35.4 435 167-1053 106-559 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 449.2 42.0 428 165-1051 447-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 443.9 36.2 435 167-1053 36-489 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 440.3 39.2 215 165-414 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 435.7 31.3 445 175-1066 21-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 427.3 30.5 201 841-1066 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 344.7 18.3 214 812-1052 413-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 336.9 36.8 197 841-1052 598-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=680.27 Aligned_cols=789 Identities=19% Similarity=0.242 Sum_probs=399.2
Q ss_pred EEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 16999301699998258877788046679999988865210125665531530305678288399998599997899999
Q 000576 118 IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLL 197 (1412)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~ 197 (1412)
.+++|+|+++.++ ..+..++|+|+|+.++||++++|+||+|||||||++
T Consensus 414 g~I~~~nvsF~Y~-------------------------------~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 414 GDITVENVHFTYP-------------------------------SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp CCEEEEEEEECCS-------------------------------SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHH
T ss_pred CCEEEEEEEEECC-------------------------------CCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHH
T ss_conf 7679998554079-------------------------------999874333318862288278998058985778888
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98459799997000999988237876754---108997678876899999999997644027873245758978999872
Q 000576 198 ALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274 (1412)
Q Consensus 198 ~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~ 274 (1412)
+|.|+++|. +|+|.+||+++++.... +.++||+| |.++++.||||||.|+..
T Consensus 463 ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q-~~~Lf~~TI~eNI~~g~~--------------------- 517 (1321)
T 4f4c_A 463 LLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQ-EPALFNCTIEENISLGKE--------------------- 517 (1321)
T ss_dssp HHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECS-SCCCCSEEHHHHHHTTCT---------------------
T ss_pred HHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCC-CCEEECCCHHHHHHHHCC---------------------
T ss_conf 754565164---4861579965011259998504666587-533207861678864155---------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 99999995899999975113456999999999299865553335755555783235579999997289837698479889
Q 000576 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354 (1412)
Q Consensus 275 ~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsg 354 (1412)
+.+.+...+|+...+. .|. +-.|+++.||.||+++. .||||||||++||||++.+|+|++||||||+
T Consensus 518 ----~~~~~~v~~a~~~a~l-----~~~---i~~lp~G~~T~vGe~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSa 584 (1321)
T 4f4c_A 518 ----GITREEMVAACKMANA-----EKF---IKTLPNGYNTLVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSA 584 (1321)
T ss_dssp ----TCCHHHHHHHHHHTTC-----HHH---HHHSTTTTSSEESSSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred ----CCHHHHHHHHHHHCCC-----HHH---HHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf ----2209999999987565-----468---87088888607558988-7777787999999987259998998455446
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCC-HHHH
Q ss_conf 998999999999999998529859999845923698425849998199399954944499999863987999999-6688
Q 000576 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKG-VADF 433 (1412)
Q Consensus 355 LDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~-~adf 433 (1412)
||+.+...+.++|+++.+ ++|+|+ +.|.. .+...+|+|++|++|+|+.+|+++++++- .+ -++.
T Consensus 585 LD~~te~~i~~~l~~~~~--~~T~ii-iaHrl-s~i~~aD~Iivl~~G~ive~Gth~eL~~~-----------~g~y~~l 649 (1321)
T 4f4c_A 585 LDAESEGIVQQALDKAAK--GRTTII-IAHRL-STIRNADLIISCKNGQVVEVGDHRALMAQ-----------QGLYYDL 649 (1321)
T ss_dssp SCTTTHHHHHHHHHHHHT--TSEEEE-ECSCT-TTTTTCSEEEEEETTEEEEEECHHHHHTT-----------TCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC--CCEEEE-ECCCH-HHHHHCCEEEEEECCEEECCCCHHHHHHH-----------HHHHHHH
T ss_conf 887899999999999847--988999-73638-78986898999639965136899999985-----------3279999
Q ss_pred HHH--HCCCHHHHHHH--HCCCCCCC-----------CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC------
Q ss_conf 984--04812245543--12798875-----------5798699999870500001342108988888888765------
Q 000576 434 LQE--VTSRKDQEQYW--ANKEEPYR-----------FVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAA------ 492 (1412)
Q Consensus 434 l~e--v~s~~~~~q~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------ 492 (1412)
... .....+..... ........ .....+.....+............ ......+.....
T Consensus 650 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 728 (1321)
T 4f4c_A 650 VTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPV-IDEKEERIGKDALSRLKQ 728 (1321)
T ss_dssp HHHHHHHHHHHHHHCC---------------------------------------------------CCCCCCHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHH
T ss_conf 9962212222332334433223211122222342222222110221110132124567740-257775315403899999
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --46787777879999999999999973163899999999999-------999999987066788776554111557999
Q 000576 493 --LTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTT-------IALVTMTLFFRTKMHRDSVTDGVIYAGATF 563 (1412)
Q Consensus 493 --~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~~-------~ali~gtif~~~~~~~~~~~~~~~~~g~lf 563 (1412)
........+.+. -+...+......++..+...+ .+++.+........+.........+...+|
T Consensus 729 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1321)
T 4f4c_A 729 ELEENNAQKTNLFE--------ILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMF 800 (1321)
T ss_dssp TTTTSCCCCCCHHH--------HHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHH
T ss_pred HHHHCCCCCEEHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99970786310999--------9999877899999999999999999999999999999875179345566789999999
Q ss_pred HHHHH--HHHHHHHHHHHHH--------HCCHHHHHH--HHCCCC--------------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999--9999999999986--------101357874--314776--------------436589976865641999999
Q 000576 564 FIIIM--IMFNGMAEISMTI--------AKLPIFYKQ--RDLQFY--------------PSWAYAFPTWIPKIPISFVEV 617 (1412)
Q Consensus 564 f~~~~--~~~~~~~~l~~~~--------~~~pvf~kq--r~~~~y--------------~~~ay~l~~~l~~ip~~~i~~ 617 (1412)
..+.. ..+.......... .+..+|.+- ....|| ..+...+...+......++..
T Consensus 801 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~ 880 (1321)
T 4f4c_A 801 LVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITT 880 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999988873499333216788848888502505999999999999999998
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 9888654-330455779789999999999999999999999988--3166788998999999999988403105567045
Q 000576 618 AVWVFST-YYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAA--TGRNLVVANTFGAFALLLLYALGGFVLNREDIKS 694 (1412)
Q Consensus 618 ~i~~~i~-Y~~~gl~~~~~~ff~~~l~l~l~~~~~~~l~r~ia~--~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~ 694 (1412)
++..+.. .++.-+.+...-+....+.+++ . ...+... ...........+.......-.+.|.-..+
T Consensus 881 ~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIr----- 949 (1321)
T 4f4c_A 881 LVSMVAGIGLAFFYGWQMALLIIAILPIVA---F---GQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQ----- 949 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---H---HHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHH-----
T ss_pred HHHHHHHEEEEHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 653777702213786899999999888999---9---99999999999999999998889889999996279888-----
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC--------CCHHH----------HHHH
Q ss_conf 89999877689999999999971299654458998872247876226743466--------30224----------5789
Q 000576 695 WWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDS--------YWYWL----------GVGA 756 (1412)
Q Consensus 695 w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~--------~~~w~----------~~g~ 756 (1412)
+ |+.+....+.|....-. . .........+....+.... ...|. .++.
T Consensus 950 ----a-------~~~e~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 1014 (1321)
T 4f4c_A 950 ----A-------LAREDTFYENFCEKLDI-P---HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP 1014 (1321)
T ss_dssp ----H-------TTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH
T ss_pred ----H-------CCCHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf ----6-------14148899999999999-9---9999999999999999999999999999998757887537654214
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEE
Q ss_conf 99999999999999998205432000-------0124566631----101125876678865677771689951012231
Q 000576 757 LLGFIILFNIGFALALSFLNWSADDI-------RRRDSSSQSL----ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVD 825 (1412)
Q Consensus 757 L~g~~i~f~~~~~l~L~~l~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 825 (1412)
+..+.++ .++.......... .....+..+. +...+.+.....+ ..+.....++|+||+++|+
T Consensus 1015 ~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~ 1087 (1321)
T 4f4c_A 1015 MRVLRVM------YAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYP 1087 (1321)
T ss_dssp HHHHHHH------HHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCS-BCCCCCCCEEEEEEEECCT
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEEEEEEEECC
T ss_conf 7899999------99987788999999999999999999998999860766577766778-7888888189998798579
Q ss_pred CCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEE
Q ss_conf 4401231154577505400307777188099997679998446996461997787078999996930781---0112157
Q 000576 826 MPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARIS 902 (1412)
Q Consensus 826 ~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~---~~~~~~~ 902 (1412)
.. ....+|+|+|+.++|||++||+|+||||||||+++|.|... +.+|+|.+||.++++ ..+++.+
T Consensus 1088 ~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1088 ER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp TS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTE
T ss_pred CC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHE
T ss_conf 99----------98821245169988989999989999819999999956863--8997899999986549999998545
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHH-------HHCCCCCCCCCCCCHHHHHHH
Q ss_conf 7861588889998999999999872079999988999999999999299201-------010027998877798888789
Q 000576 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGLPGVNGLSTEQRKRL 975 (1412)
Q Consensus 903 ~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~~~~glSgGqrkRl 975 (1412)
+||+|+..++ ..|+|||+.|.. .|.+.+++ .++++++..++.+. -|+.+|..| .+||||||||+
T Consensus 1156 ~~V~Qdp~LF-~gTIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQri 1226 (1321)
T 4f4c_A 1156 AIVSQEPTLF-DCSIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRI 1226 (1321)
T ss_dssp EEECSSCCCC-SEEHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHH
T ss_pred EEECCCCEEE-CCCHHHHHHCCC---CCCCCCHH----HHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHH
T ss_conf 9987899732-723999974549---99999999----999999982984999717678999823889-15699999999
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCC
Q ss_conf 99999960996899959999999999999999999998579989999558858999864517688159499998599989
Q 000576 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRH 1055 (1412)
Q Consensus 976 ~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~g~~ 1055 (1412)
||||+|+++|+||+||||||+||+.|+..|+++|++.. .|||+|+++|+.+. ...+|++++|+ +|+++.+|+.
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld-~G~IvE~Gth--- 1299 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS-NGTIIEKGTH--- 1299 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-SSSEEEEECH---
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEE-CCEEEEECCH---
T ss_conf 99999971799899968111578999999999999973-99989996068999--99699999998-9899998888---
Q ss_pred CHHHHH
Q ss_conf 037987
Q 000576 1056 SSHLIK 1061 (1412)
Q Consensus 1056 ~~~~~~ 1061 (1412)
+++++
T Consensus 1300 -~eLl~ 1304 (1321)
T 4f4c_A 1300 -TQLMS 1304 (1321)
T ss_dssp -HHHHH
T ss_pred -HHHHH
T ss_conf -99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=612.28 Aligned_cols=805 Identities=17% Similarity=0.214 Sum_probs=388.6
Q ss_pred CEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 41699930169999825887778804667999998886521012566553153030567828839999859999789999
Q 000576 117 EIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL 196 (1412)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL 196 (1412)
..+++++|+++.+. .....++|+|+|+.++||+.++|+||+|||||||+
T Consensus 385 ~g~i~~~~v~~~y~-------------------------------~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYP-------------------------------SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp CCCEEEEEEEECCS-------------------------------STTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred CCEEEEEEEEEECC-------------------------------CCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHH
T ss_conf 77189999899769-------------------------------99987101254589759988999899999799999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99845979999700099998823787675---410899767887689999999999764402787324575897899987
Q 000576 197 LALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273 (1412)
Q Consensus 197 ~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~ 273 (1412)
++|+|.++|+ +|+|.++|.++.+..+ ++.++||+|+. ++.+.||+||+.|+... ...+.+.+.++
T Consensus 434 ~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~~ti~eNi~~g~~~----~~~~~~~~~~~---- 501 (1284)
T 3g5u_A 434 QLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEP-VLFATTIAENIRYGRED----VTMDEIEKAVK---- 501 (1284)
T ss_dssp HHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSC-CCCSSCHHHHHHHHCSS----CCHHHHHHHHH----
T ss_pred HHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCC-CCCCCCHHHHHHCCCCC----CCHHHHHHHHH----
T ss_conf 9980788999---738999999877579999986548986887-53776699997457989----99999999999----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 29999999589999997511345699999999929986555333575555578323557999999728983769847988
Q 000576 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353 (1412)
Q Consensus 274 ~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEpts 353 (1412)
..+ ..|. +..|+++.||.||+.+. .||||||||++|||+++.+|++++||||||
T Consensus 502 -----------------~~~-----~~~~---i~~l~~g~~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts 555 (1284)
T 3g5u_A 502 -----------------EAN-----AYDF---IMKLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATS 555 (1284)
T ss_dssp -----------------HTT-----CHHH---HHHSTTGGGCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTC
T ss_pred -----------------HHC-----CHHH---HHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf -----------------829-----6999---97465633450147878-659999999999999952999899979877
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH----HHHHCCCCCCCCCC
Q ss_conf 99989999999999999985298599998459236984258499981993999549444999----99863987999999
Q 000576 354 GLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE----FFEFMGFKCPERKG 429 (1412)
Q Consensus 354 gLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~----~F~~lGf~cp~~~~ 429 (1412)
+||+.+...+.+.++... .++| ++.+.|....+.. +|+|++|++|+++++|+++++++ |++-..-......
T Consensus 556 ~LD~~~~~~i~~~l~~~~--~~~t-~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~- 630 (1284)
T 3g5u_A 556 ALDTESEAVVQAALDKAR--EGRT-TIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNE- 630 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHH--TTSE-EEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-----
T ss_pred CCCHHHHHHHHHHHHHHC--CCCE-EEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHCCC-
T ss_conf 779999999999999973--9998-9999407789974-9989999899999978899998678779999997430022-
Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 66889840481224554312798875579869999987050000134210898888--8888765467877778799999
Q 000576 430 VADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDK--TKSHPAALTTKKYGVGKKESLK 507 (1412)
Q Consensus 430 ~adfl~ev~s~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~s~~~~~~ 507 (1412)
.+.-.+.....+... ....... ......... ... ......+... ...............+.+..++
T Consensus 631 -~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1284)
T 3g5u_A 631 -IELGNEACKSKDEID---NLDMSSK-DSGSSLIRR-RST------RKSICGPHDQDRKLSTKEALDEDVPPASFWRILK 698 (1284)
T ss_dssp -----------------------------------------------------------------CCCCCSCCCTTHHHH
T ss_pred -CCCCCCCCCCCCCCC---CCCCCCC-CCCCCCCCC-CCC------CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf -111333333222223---4433333-333200034-543------3344564223321102455531366258999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHH-----HHHHHH
Q ss_conf 999999999731638999999999-------9999999998---7066788776554111557999999-----999999
Q 000576 508 ACNSRELLLMKRNSFVYFFKLFQL-------TTIALVTMTL---FFRTKMHRDSVTDGVIYAGATFFII-----IMIMFN 572 (1412)
Q Consensus 508 ~~~~R~~l~~~r~~~~~~~~~~~~-------~~~ali~gti---f~~~~~~~~~~~~~~~~~g~lff~~-----~~~~~~ 572 (1412)
. .++.+..+....+.. ...+.+.+.+ +...... ........+...++..+ +...+.
T Consensus 699 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 699 L--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPP-ETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp H--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8--------451579999999999999999999999999999998556850-3367799999999999999999999999
Q ss_pred HH-----H---------HHHHHHHCCHHHHHHH-------HCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCC
Q ss_conf 99-----9---------9999861013578743-------14776436589976865641999999988-8654330455
Q 000576 573 GM-----A---------EISMTIAKLPIFYKQR-------DLQFYPSWAYAFPTWIPKIPISFVEVAVW-VFSTYYVIGF 630 (1412)
Q Consensus 573 ~~-----~---------~l~~~~~~~pvf~kqr-------~~~~y~~~ay~l~~~l~~ip~~~i~~~i~-~~i~Y~~~gl 630 (1412)
.+ . .+...+.+.|+-+.++ ..+.+..+...+...+......++..++. ...+.++..+
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999839988875789988999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHCHHHHHH
Q ss_conf 779789999999999999999999999988316678899899999999998840310556-7045899998776899999
Q 000576 631 DPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNRE-DIKSWWIWAYWCSPLMYAQ 709 (1412)
Q Consensus 631 ~~~~~~ff~~~l~l~l~~~~~~~l~r~ia~~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~-~ip~w~~W~~~isp~~y~~ 709 (1412)
.+...-+....+.+++... ....+...... ...............-.+.|.-..+. ....++.-.+.-.--.+..
T Consensus 850 ~~~l~lv~l~~~p~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~ 925 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAG--VVEMKMLSGQA--LKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR 925 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999999--99999999999--9999999999999999998899999846599999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHH---HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999971299654458998872247---876226743466302245789999999999999999982054320000124
Q 000576 710 NAIMVNEFLGHSWRKILPNTTEPLGV---EVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRD 786 (1412)
Q Consensus 710 ~al~~nef~~~~~~~~~~~~~~~~G~---~~L~~~~~~~~~~~~w~~~g~L~g~~i~f~~~~~l~L~~l~~~~~~~~~~~ 786 (1412)
.........+...... ........ ..+....... . ++.++.++.+...... ....+..+...........
T Consensus 926 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~lv~~--~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 998 (1284)
T 3g5u_A 926 NAMKKAHVFGITFSFT--QAMMYFSYAAAFRFGAYLVTQ--Q--LMTFENVLLVFSAIVF-GAMAVGQVSSFAPDYAKAT 998 (1284)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCSS--S--CSCSTTHHHHHHHHHH-HHHHHHHHTSSSCCSTHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--C--CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999--999999999999999999990--9--8069999999999999-9999999999999999999
Q ss_pred CCCCCCCC----CCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCC
Q ss_conf 56663110----11258766788656777716899510122314401231154577505400307777188099997679
Q 000576 787 SSSQSLET----ITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVT 862 (1412)
Q Consensus 787 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~s 862 (1412)
....+... ..+.......+...+.....++++|+++.++.. ....+|+|+|+.++|||++||+|+|
T Consensus 999 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~s 1068 (1284)
T 3g5u_A 999 VSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSS 1068 (1284)
T ss_dssp HHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCC
T ss_conf 999999999838876666555665456777857999989977999----------9870020305997699889998899
Q ss_pred CCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 998446996461997787078999996930781---01121577861588889998999999999872079999988999
Q 000576 863 GAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRK 939 (1412)
Q Consensus 863 GaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~ 939 (1412)
|||||||+++|+|... +.+|+|.+||.+... ..+++.++||+|+..++ ..||+|++.+... ....+.++
T Consensus 1069 GsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~---~~~~~~~~-- 1140 (1284)
T 3g5u_A 1069 GCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDN---SRVVSYEE-- 1140 (1284)
T ss_dssp STTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCS---SCCCCHHH--
T ss_pred CCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCC---CCCCCHHH--
T ss_conf 9978999999946867--89977989999800078999970268987787406-6669999746687---78999999--
Q ss_pred HHHHHHHHHCCCCH-------HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999929920-------10100279988777988887899999996099689995999999999999999999999
Q 000576 940 MFIEEVMELVELNL-------LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012 (1412)
Q Consensus 940 ~~v~~vl~~l~l~~-------~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~ 1012 (1412)
+.+.++..++.+ -.|+.+|..| ..||||||||++|||+|+.+|+||+|||||+|||..+...|++.+++.
T Consensus 1141 --i~~~~~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1141 --IVRAAKEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp --HHHHHHHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf --99999983959999727042456117888-933899999999999997499999986875557999999999999986
Q ss_pred HHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 8579989999558858999864517688159499998599
Q 000576 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1013 ~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
. .|+|||+++|+++. + ..+|++++|. +|+++..|+.
T Consensus 1218 ~-~~~tvi~isH~l~~-i-~~~dri~vl~-~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1218 R-EGRTCIVIAHRLST-I-QNADLIVVIQ-NGKVKEHGTH 1253 (1284)
T ss_dssp S-SSSCEEEECSCTTG-G-GSCSEEEEEE-TBEEEEEECH
T ss_pred C-CCCEEEEEECCHHH-H-HCCCEEEEEE-CCEEEEECCH
T ss_conf 7-99989999558799-9-8099899998-9989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=454.34 Aligned_cols=435 Identities=23% Similarity=0.302 Sum_probs=310.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 15303056782883999985999978999999845979999700099---------9988237876-----754108997
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRV---------TYNGHNMDEF-----VPQRTAAYI 232 (1412)
Q Consensus 167 ~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~~yv 232 (1412)
.+|+++| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.+.... .....++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67887689---999999999764402787324575897899987299999995899999975113456999999999299
Q 000576 233 SQHDVHIG---EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGL 309 (1412)
Q Consensus 233 ~Q~d~~~~---~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL 309 (1412)
.|.-...+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 86555333575555578323557999999728983769847988999899999999999999852985999984592369
Q 000576 310 DVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 310 ~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~ 389 (1412)
++..|..++ .|||||||||+||++|+.+|++++|||||++||..+...+.+.|+++.+ . +++++.++|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-E-GKAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6-99899996485898
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 84258499981993999549444999998639879999996688984048122455431279887557986999998705
Q 000576 390 YDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSF 469 (1412)
Q Consensus 390 ~~lfD~IilL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1412)
..++|+|++|.++...| |.. ..+.
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~~--------------- 315 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKPK--------------- 315 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCCE---------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCCH---------------
T ss_conf 86589999977986445-212----------------------------------------2413---------------
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00001342108988888888765467877778799999999999999731638999999999999999999870667887
Q 000576 470 SVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHR 549 (1412)
Q Consensus 470 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 549 (1412)
. . ++... ...
T Consensus 316 -----------------------------~--~---------~~~i~------------------~~~------------ 325 (607)
T 3bk7_A 316 -----------------------------G--T---------RNGIN------------------EFL------------ 325 (607)
T ss_dssp -----------------------------E--H---------HHHHH------------------HHH------------
T ss_pred -----------------------------H--H---------HHHHH------------------HHH------------
T ss_conf -----------------------------2--7---------99999------------------997------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76554111557999999999999999999986101357874314776436589976865641999999988865433045
Q 000576 550 DSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIG 629 (1412)
Q Consensus 550 ~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~l~~~l~~ip~~~i~~~i~~~i~Y~~~g 629 (1412)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 57797899999999999999999999999883166788998999999999988403105567045899998776899999
Q 000576 630 FDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQ 709 (1412)
Q Consensus 630 l~~~~~~ff~~~l~l~l~~~~~~~l~r~ia~~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 709 (1412)
.|+. +..+
T Consensus 326 -----------------------------------------------------~~~~-~~~~------------------ 333 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL-KDEN------------------ 333 (607)
T ss_dssp -----------------------------------------------------HTEE-TTTT------------------
T ss_pred -----------------------------------------------------HHCC-HHHH------------------
T ss_conf -----------------------------------------------------5101-3455------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999971299654458998872247876226743466302245789999999999999999982054320000124566
Q 000576 710 NAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSS 789 (1412)
Q Consensus 710 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~L~g~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~ 789 (1412)
.+.... .. .+.
T Consensus 334 ----------~~~~~~------~~--------~~~--------------------------------------------- 344 (607)
T 3bk7_A 334 ----------VRFRPY------EI--------RFT--------------------------------------------- 344 (607)
T ss_dssp ----------EECCSS------CC--------CCC---------------------------------------------
T ss_pred ----------HHCCCC------CC--------CCC---------------------------------------------
T ss_conf ----------430121------23--------456---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHH
Q ss_conf 63110112587667886567777168995101223144012311545775054003077771880999976799984469
Q 000576 790 QSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTL 869 (1412)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTL 869 (1412)
.. . .... ......++++|+++.++ + ..|+++++.+++||.+||+|+||||||||
T Consensus 345 -----~~--~-~~~~----~~~~~~l~~~~l~~~~~------------~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTL 398 (607)
T 3bk7_A 345 -----KL--S-ERVD----VERETLVEYPRLVKDYG------------S--FKLEVEPGEIRKGEVIGIVGPNGIGKTTF 398 (607)
T ss_dssp -----CS--T-TSCC----CCCCEEEEECCEEEECS------------S--CEEEECCEEEETTCEEEEECCTTSSHHHH
T ss_pred -----CC--C-CCCC----CCCCEEEEEECEEEEEC------------C--EEEEECCCCCCCCCEEEEECCCCCCHHHH
T ss_conf -----57--7-7544----46752899913098744------------3--48993515327998999999999899999
Q ss_pred HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 96461997787078999996930781011215778615888899989999999998720799999889999999999992
Q 000576 870 MDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949 (1412)
Q Consensus 870 l~~L~gr~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l 949 (1412)
+++|+|.... .+|+|.+ .+.++|++|+....+.+||.|.+........ .....++++++.+
T Consensus 399 lk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 399 VKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPL 459 (607)
T ss_dssp HHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHH
T ss_pred HHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHC
T ss_conf 9999669888--8628999----------0279998057667789849999975312587-------7899999999876
Q ss_pred CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCH
Q ss_conf 9920101002799887779888878999999960996899959999999999999999999998-579989999558858
Q 000576 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 1028 (1412)
Q Consensus 950 ~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~-~~g~Tvi~t~Hqps~ 1028 (1412)
++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|++++ +.|.|||+++|+..
T Consensus 460 ~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~- 533 (607)
T 3bk7_A 460 GIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL- 533 (607)
T ss_dssp TCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-
T ss_pred CCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-
T ss_conf 9933754992-----2379999999999999974899899968744789999999999999999747989999909899-
Q ss_pred HHHHHHCCEEEEEC-CCEEEEECCCC
Q ss_conf 99986451768815-94999985999
Q 000576 1029 DIFEAFDELFLLKR-GGQEIYVGPLG 1053 (1412)
Q Consensus 1029 ~i~~~fD~llll~~-gG~~vy~G~~g 1053 (1412)
.+...+|++++|.. .|+.+..|++.
T Consensus 534 ~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 534 MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHCCEEEEECCCCCEEEECCCHH
T ss_conf 99986999999959830697428989
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=449.18 Aligned_cols=428 Identities=19% Similarity=0.281 Sum_probs=304.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCC
Q ss_conf 53153030567828839999859999789999998459799997000999988237876754108997678-87689999
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQH-DVHIGEMT 243 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lT 243 (1412)
.+.+|+|+|+.+++|+.++|+||||||||||+++|+| |+| +|.+... ...++|++|+ +..++.+|
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCC
T ss_conf 9876741269981897899999999879999999948---------986--7976635---4169997356432455780
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 9999997644027873245758978999872999999958999999751134569999999992998-655533357555
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGDEMI 322 (1412)
Q Consensus 244 VrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~-~~~dT~VG~~~~ 322 (1412)
|.|++.+ ...+ . . ..++.+++.+||+ +..+..++
T Consensus 513 v~e~l~~--~~~~--~----------~---------------------------~~v~~~L~~lgL~~~~~~~~~~---- 547 (986)
T 2iw3_A 513 VLDFVFE--SGVG--T----------K---------------------------EAIKDKLIEFGFTDEMIAMPIS---- 547 (986)
T ss_dssp HHHHHHT--TCSS--C----------H---------------------------HHHHHHHHHTTCCHHHHHSBGG----
T ss_pred HHHHHHH--HHCC--H----------H---------------------------HHHHHHHHHCCCCHHHHCCCCC----
T ss_conf 9999998--6127--9----------9---------------------------9999999986998446439802----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECC
Q ss_conf 55783235579999997289837698479889998999999999999998529859999845923698425849998199
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G 402 (1412)
.||||||||++||++++.+|++++|||||+|||..+...+.+.|++ . +++++.++|...++.+++|+|++|.+|
T Consensus 548 -~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 548 -ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGL 621 (986)
T ss_dssp -GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----C-CCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf -0799999999999999649999999797667999999999999986----7-998999979889999868999999799
Q ss_pred EEE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 399-9549444999998639879999996688984048122455431279887557986999998705000013421089
Q 000576 403 QIV-YQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGI 481 (1412)
Q Consensus 403 ~iv-y~G~~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 481 (1412)
+++ +.|+.+++... .| ...++
T Consensus 622 ~iv~~~G~~~e~~~~-------~~----------------~~~~~----------------------------------- 643 (986)
T 2iw3_A 622 KLRKYKGNFTEFVKK-------CP----------------AAKAY----------------------------------- 643 (986)
T ss_dssp EEEEEESCHHHHHHH-------CG----------------GGGGS-----------------------------------
T ss_pred EEECCCCCHHHHHHH-------HH----------------HHHHH-----------------------------------
T ss_conf 442677999999861-------48----------------89999-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 88888888765467877778799999999999999731638999999999999999999870667887765541115579
Q 000576 482 PFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGA 561 (1412)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~ 561 (1412)
+. . ......
T Consensus 644 ----------------~~---------------------------------------------l--~~~~~~-------- 652 (986)
T 2iw3_A 644 ----------------EE---------------------------------------------L--SNTDLE-------- 652 (986)
T ss_dssp ----------------SS---------------------------------------------T--TTCCCC--------
T ss_pred ----------------HH---------------------------------------------H--HHHHHH--------
T ss_conf ----------------86---------------------------------------------4--454432--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999986101357874314776436589976865641999999988865433045577978999999
Q 000576 562 TFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQY 641 (1412)
Q Consensus 562 lff~~~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~l~~~l~~ip~~~i~~~i~~~i~Y~~~gl~~~~~~ff~~~ 641 (1412)
T Consensus 653 -------------------------------------------------------------------------------- 652 (986)
T 2iw3_A 653 -------------------------------------------------------------------------------- 652 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999883166788998999999999988403105567045899998776899999999999712996
Q 000576 642 LLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHS 721 (1412)
Q Consensus 642 l~l~l~~~~~~~l~r~ia~~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~ 721 (1412)
..
T Consensus 653 ------------------------------------------------------------------------------~~ 654 (986)
T 2iw3_A 653 ------------------------------------------------------------------------------FK 654 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------CC
T ss_conf ------------------------------------------------------------------------------03
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54458998872247876226743466302245789999999999999999982054320000124566631101125876
Q 000576 722 WRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEANQP 801 (1412)
Q Consensus 722 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~L~g~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1412)
+. .+. .. ...
T Consensus 655 ~p--~~~--------------~~------------------------------------------------------~~~ 664 (986)
T 2iw3_A 655 FP--EPG--------------YL------------------------------------------------------EGV 664 (986)
T ss_dssp CC--CCC--------------CC------------------------------------------------------TTC
T ss_pred CC--CCC--------------CC------------------------------------------------------CCC
T ss_conf 56--555--------------43------------------------------------------------------345
Q ss_pred CCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCE
Q ss_conf 67886567777168995101223144012311545775054003077771880999976799984469964619977870
Q 000576 802 KRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY 881 (1412)
Q Consensus 802 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~ 881 (1412)
. +....-+.++|++++++. ..+.+|+|+|+.+++|+.++|+|+||||||||+++|+|... +
T Consensus 665 ~------~~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P 725 (986)
T 2iw3_A 665 K------TKQKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--P 725 (986)
T ss_dssp C------STTSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--C
T ss_pred C------CCCCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--C
T ss_conf 6------678706999846998189-----------87413432279982897899989999879999999957988--8
Q ss_pred EEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHC------------CC---------------
Q ss_conf 789999969307810112157786158888----99989999999998720------------79---------------
Q 000576 882 VTGNITISGYPKKQETFARISGYCEQNDIH----SPQVTVYESLLYSAWLR------------LS--------------- 930 (1412)
Q Consensus 882 ~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~----~~~lTV~E~l~f~a~lr------------~~--------------- 930 (1412)
.+|+|.++|. ..++|++|+..+ ....|++|.+.+.-... +.
T Consensus 726 ~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g 797 (986)
T 2iw3_A 726 TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEG 797 (986)
T ss_dssp SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETT
T ss_pred CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 8608998686--------42576313024332100114799998877504502555543321034355544200011232
Q ss_pred -------------------------------------CCC--------C--------------------------HHHHH
Q ss_conf -------------------------------------999--------9--------------------------88999
Q 000576 931 -------------------------------------PEV--------D--------------------------SKTRK 939 (1412)
Q Consensus 931 -------------------------------------~~~--------~--------------------------~~~~~ 939 (1412)
... . ....+
T Consensus 798 ~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~ 877 (986)
T 2iw3_A 798 TPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTR 877 (986)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 01234444555431222002100025543200000123432344321016777666766554432455543022323479
Q ss_pred HHHHHHHHHCCCCH-H-HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999929920-1-010027998877798888789999999609968999599999999999999999999985799
Q 000576 940 MFIEEVMELVELNL-L-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017 (1412)
Q Consensus 940 ~~v~~vl~~l~l~~-~-~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~ 1017 (1412)
..++++++.+++.. . .+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.+++. +.
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~ 949 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EG 949 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SS
T ss_pred HHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CC
T ss_conf 9999999976998054448980-----423999999999999998399999997986577999999999999974---99
Q ss_pred EEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 8999955885899986451768815949999859
Q 000576 1018 TVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 1018 Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~ 1051 (1412)
|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 950 tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 950 GVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp EEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred EEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 7999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=443.92 Aligned_cols=435 Identities=22% Similarity=0.291 Sum_probs=307.7
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 15303056782883999985999978999999845979999700099---------9988237876-----754108997
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRV---------TYNGHNMDEF-----VPQRTAAYI 232 (1412)
Q Consensus 167 ~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~~yv 232 (1412)
.+|+++| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.+.... .....++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67887689---999999999764402787324575897899987299999995899999975113456999999999299
Q 000576 233 SQHDVHIG---EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGL 309 (1412)
Q Consensus 233 ~Q~d~~~~---~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL 309 (1412)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 86555333575555578323557999999728983769847988999899999999999999852985999984592369
Q 000576 310 DVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 310 ~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~ 389 (1412)
++..|..++ .|||||||||+||++|+.+|++|+|||||++||..+...+.+.|+++.+ . +.+++.++|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-E-GKSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5-98799994788999
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 84258499981993999549444999998639879999996688984048122455431279887557986999998705
Q 000576 390 YDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSF 469 (1412)
Q Consensus 390 ~~lfD~IilL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1412)
..++|+|++|.+|...| |. ...++
T Consensus 222 ~~~~dri~vl~~~~~~~-~~----------------------------------------~~~~~--------------- 245 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GI----------------------------------------FSQPK--------------- 245 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EE----------------------------------------ECCCE---------------
T ss_pred HHHCCEEEEECCCCCCC-CC----------------------------------------CCCHH---------------
T ss_conf 97688999986863244-02----------------------------------------25535---------------
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00001342108988888888765467877778799999999999999731638999999999999999999870667887
Q 000576 470 SVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHR 549 (1412)
Q Consensus 470 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 549 (1412)
. . +..+ ....
T Consensus 246 -----------------------------~--~---------~~~~------------------~~~~------------ 255 (538)
T 1yqt_A 246 -----------------------------G--T---------RNGI------------------NEFL------------ 255 (538)
T ss_dssp -----------------------------E--H---------HHHH------------------HHHH------------
T ss_pred -----------------------------H--H---------HHHH------------------HHHH------------
T ss_conf -----------------------------5--8---------9999------------------9876------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76554111557999999999999999999986101357874314776436589976865641999999988865433045
Q 000576 550 DSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIG 629 (1412)
Q Consensus 550 ~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~l~~~l~~ip~~~i~~~i~~~i~Y~~~g 629 (1412)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 57797899999999999999999999999883166788998999999999988403105567045899998776899999
Q 000576 630 FDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQ 709 (1412)
Q Consensus 630 l~~~~~~ff~~~l~l~l~~~~~~~l~r~ia~~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 709 (1412)
.|+.... .
T Consensus 256 -----------------------------------------------------~~~~~~~-~------------------ 263 (538)
T 1yqt_A 256 -----------------------------------------------------RGYLKDE-N------------------ 263 (538)
T ss_dssp -----------------------------------------------------HTEETTT-T------------------
T ss_pred -----------------------------------------------------HHCCCHH-H------------------
T ss_conf -----------------------------------------------------4023002-3------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999971299654458998872247876226743466302245789999999999999999982054320000124566
Q 000576 710 NAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSS 789 (1412)
Q Consensus 710 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~L~g~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~ 789 (1412)
...... .. .+. .
T Consensus 264 ----------~~~~~~-~~-------------~~~--------------------------------~------------ 275 (538)
T 1yqt_A 264 ----------VRFRPY-EI-------------KFT--------------------------------K------------ 275 (538)
T ss_dssp ----------EECSSS-CC-------------CCC--------------------------------C------------
T ss_pred ----------HCCCCC-CC-------------CCC--------------------------------C------------
T ss_conf ----------203444-55-------------545--------------------------------5------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHH
Q ss_conf 63110112587667886567777168995101223144012311545775054003077771880999976799984469
Q 000576 790 QSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTL 869 (1412)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTL 869 (1412)
...... +.....+.++|+++.++ + ..|+++++.+++||.+||+|+||||||||
T Consensus 276 ---------~~~~~~----~~~~~~l~~~~l~~~~~------------~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTL 328 (538)
T 1yqt_A 276 ---------TGERVE----IERETLVTYPRLVKDYG------------S--FRLEVEPGEIKKGEVIGIVGPNGIGKTTF 328 (538)
T ss_dssp ---------SSGGGS----SCCCEEEEECCEEEEET------------T--EEEEECCEEEETTCEEEEECCTTSSHHHH
T ss_pred ---------CCCCCC----CCCCEEEEEEEEEEEEC------------C--EEEEECCCCCCCCCEEEEECCCCCCHHHH
T ss_conf ---------776556----67871899930799989------------9--89990744128998999988999999999
Q ss_pred HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 96461997787078999996930781011215778615888899989999999998720799999889999999999992
Q 000576 870 MDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949 (1412)
Q Consensus 870 l~~L~gr~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l 949 (1412)
+++|+|.... .+|+|.+ ...++|++|+....+.+||.|.+......... ....++++++.+
T Consensus 329 lk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~ 389 (538)
T 1yqt_A 329 VKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPL 389 (538)
T ss_dssp HHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTT
T ss_pred HHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHC
T ss_conf 9999679989--9718998----------74699982677678888599999864036887-------899999999974
Q ss_pred CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCH
Q ss_conf 99201010027998877798888789999999609968999599999999999999999999985-79989999558858
Q 000576 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI 1028 (1412)
Q Consensus 950 ~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~-~g~Tvi~t~Hqps~ 1028 (1412)
++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|+..
T Consensus 390 ~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~- 463 (538)
T 1yqt_A 390 GIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL- 463 (538)
T ss_dssp TCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-
T ss_pred CCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-
T ss_conf 9915653994-----4489999999999999972899899939801089999999999999999867989999939899-
Q ss_pred HHHHHHCCEEEEEC-CCEEEEECCCC
Q ss_conf 99986451768815-94999985999
Q 000576 1029 DIFEAFDELFLLKR-GGQEIYVGPLG 1053 (1412)
Q Consensus 1029 ~i~~~fD~llll~~-gG~~vy~G~~g 1053 (1412)
.+...+|++++|.. .|+++..|+..
T Consensus 464 ~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 464 MIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHCCEEEEEECCCCEEEECCCHH
T ss_conf 99996899999908831574048989
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=440.30 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=152.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCCC
Q ss_conf 53153030567828839999859999789999---------------------998459799997----00099998823
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSLR----LYGRVTYNGHN 219 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL---------------------~~LaG~l~~~~~----~sG~I~~nG~~ 219 (1412)
...+|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 787675410899767887-------------------6899999999997644027873245758978999872999999
Q 000576 220 MDEFVPQRTAAYISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280 (1412)
Q Consensus 220 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~ 280 (1412)
.... +++.++|++|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 95899999975113456999999999299865-55333575555578323557999999728983--7698479889998
Q 000576 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVC-ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ--AFFMDEISTGLDS 357 (1412)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~-~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~--vlllDEptsgLDs 357 (1412)
. +.. ..+.... -.+++.+||++. .|..++ .|||||||||+||++|+.+|+ +++|||||+|||.
T Consensus 172 -~----~~~---~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -A----RLI---LREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -H----HHH---HHHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -8----888---9999999-9899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE------ECCEEEEECCHHHHH
Q ss_conf 999999999999998529859999845923698425849998------199399954944499
Q 000576 358 STTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI------SDGQIVYQGPREHVL 414 (1412)
Q Consensus 358 ~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL------~~G~ivy~G~~~~~~ 414 (1412)
.+...+++.|+++.. . +.+++.++|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-C-CCEEEEEECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4-9989999578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=435.67 Aligned_cols=445 Identities=20% Similarity=0.230 Sum_probs=301.3
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE-----------EECCCCCCCCC-----CCCEEEEECCCCC-
Q ss_conf 782883999985999978999999845979999700099-----------99882378767-----5410899767887-
Q 000576 175 IIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRV-----------TYNGHNMDEFV-----PQRTAAYISQHDV- 237 (1412)
Q Consensus 175 ~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~-----~~~~~~yv~Q~d~- 237 (1412)
..++|++++|+||||||||||+++|+|.+.|+ +|+| .++|.++.... ....+....|.-.
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEY 97 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTG
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCCCHHHHHHHCCCEEHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 79999899999999880999999996699887---785456553466776507753888788875113103111106665
Q ss_pred --CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf --689999999999764402787324575897899987299999995899999975113456999999999299865553
Q 000576 238 --HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 238 --~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT 315 (1412)
.+...||+|.+.... .....+.+++.+||++..|.
T Consensus 98 ~~~~~~~~v~~~l~~~~-------------------------------------------~~~~~~~~l~~l~l~~~~~~ 134 (538)
T 3ozx_A 98 ASKFLKGTVNEILTKID-------------------------------------------ERGKKDEVKELLNMTNLWNK 134 (538)
T ss_dssp GGTTCCSBHHHHHHHHC-------------------------------------------CSSCHHHHHHHTTCGGGTTS
T ss_pred HHHHCCCCHHHHHHCCH-------------------------------------------HHHHHHHHHHHCCCCHHHCC
T ss_conf 56653572999863301-------------------------------------------68999999987499424449
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCE
Q ss_conf 33575555578323557999999728983769847988999899999999999999852985999984592369842584
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~ 395 (1412)
.++ .|||||||||.||++|+.+|++++|||||++||..+...+.+.++++.. +.+|+.+.|...++..++|+
T Consensus 135 ~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---g~tii~vsHdl~~~~~~~d~ 206 (538)
T 3ozx_A 135 DAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK---NKYVIVVDHDLIVLDYLTDL 206 (538)
T ss_dssp BGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT---TSEEEEECSCHHHHHHHCSE
T ss_pred CHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEEECHHHHHHHCCE
T ss_conf 911-----3999999999999999729999999898666899999999999999858---99899998572788966999
Q ss_pred EEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 99981993999549444999998639879999996688984048122455431279887557986999998705000013
Q 000576 396 IILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475 (1412)
Q Consensus 396 IilL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 475 (1412)
|++|.+|...|... ..++. ..+-...+
T Consensus 207 i~vl~~~~~~~g~~-----------------------------------------~~~~~---~~~~~~~~--------- 233 (538)
T 3ozx_A 207 IHIIYGESSVYGRV-----------------------------------------SKSYA---ARVGINNF--------- 233 (538)
T ss_dssp EEEEEEETTTEEEE-----------------------------------------CCCEE---HHHHHHHH---------
T ss_pred EEEECCCCCCCCCC-----------------------------------------CHHHH---HHHHHHHH---------
T ss_conf 99946986545530-----------------------------------------03455---78789999---------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 42108988888888765467877778799999999999999731638999999999999999999870667887765541
Q 000576 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555 (1412)
Q Consensus 476 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~ 555 (1412)
+
T Consensus 234 -------------------------------------------------------------~------------------ 234 (538)
T 3ozx_A 234 -------------------------------------------------------------L------------------ 234 (538)
T ss_dssp -------------------------------------------------------------H------------------
T ss_pred -------------------------------------------------------------H------------------
T ss_conf -------------------------------------------------------------8------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 11557999999999999999999986101357874314776436589976865641999999988865433045577978
Q 000576 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAG 635 (1412)
Q Consensus 556 ~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~l~~~l~~ip~~~i~~~i~~~i~Y~~~gl~~~~~ 635 (1412)
.|+.
T Consensus 235 ------------------------------------------------------------------------~g~~---- 238 (538)
T 3ozx_A 235 ------------------------------------------------------------------------KGYL---- 238 (538)
T ss_dssp ------------------------------------------------------------------------HTEE----
T ss_pred ------------------------------------------------------------------------HHHC----
T ss_conf ------------------------------------------------------------------------6325----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999883166788998999999999988403105567045899998776899999999999
Q 000576 636 RFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715 (1412)
Q Consensus 636 ~ff~~~l~l~l~~~~~~~l~r~ia~~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~n 715 (1412)
+...+
T Consensus 239 ----------------------------------------------------~~~~~----------------------- 243 (538)
T 3ozx_A 239 ----------------------------------------------------PAENM----------------------- 243 (538)
T ss_dssp ----------------------------------------------------TTTTE-----------------------
T ss_pred ----------------------------------------------------HHHHH-----------------------
T ss_conf ----------------------------------------------------12221-----------------------
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71299654458998872247876226743466302245789999999999999999982054320000124566631101
Q 000576 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETI 795 (1412)
Q Consensus 716 ef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~L~g~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~ 795 (1412)
+.... .. .+... . .
T Consensus 244 -----~~r~~-~~-------------~~~~~--------------------------------------------~---~ 257 (538)
T 3ozx_A 244 -----KIRPD-EI-------------KFMLK--------------------------------------------E---V 257 (538)
T ss_dssp -----ECSSS-CC-------------CCSCC-------------------------------------------------
T ss_pred -----HCCCH-HH-------------HCCCC--------------------------------------------C---C
T ss_conf -----02423-33-------------10125--------------------------------------------6---2
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 12587667886567777168995101223144012311545775054003077771880999976799984469964619
Q 000576 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
. .... .......+.++|++..+. + ..|+.+++.+++||+++|+|+||||||||+++|+|
T Consensus 258 ~-~~~~------~~~~~~~l~~~~l~~~~~------------~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 258 S-DLDL------SKDLKTKMKWTKIIKKLG------------D--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp ---------------CCEEEEECCEEEEET------------T--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred C-CCCC------CCCCCCEEEECCEEEEEC------------C--EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 1-0012------345450699823399979------------8--89982664688998999999999989999999957
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 97787078999996930781011215778615888899989999999998720799999889999999999992992010
Q 000576 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955 (1412)
Q Consensus 876 r~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~ 955 (1412)
.... .+|+|.+++. .++|++|+....+..||+|++.+.... .... ....++++++.+++.+..
T Consensus 317 l~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~ 379 (538)
T 3ozx_A 317 EITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYLENASKD--ALST----SSWFFEEVTKRLNLHRLL 379 (538)
T ss_dssp SSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHHHHHHCSS--TTCT----TSHHHHHTTTTTTGGGCT
T ss_pred CCCC--CCCEEEECCE---------EEEEECHHCCCCCCCCHHHHHHHHHHH--CCCH----HHHHHHHHHHHCCCHHHH
T ss_conf 8889--9818999984---------567614000345477799999875531--1211----699999999875997786
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHH
Q ss_conf 10027998877798888789999999609968999599999999999999999999985-79989999558858999864
Q 000576 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAF 1034 (1412)
Q Consensus 956 ~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~f 1034 (1412)
+..+ ..||||||||++||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|+.. .+...+
T Consensus 380 ~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~a 453 (538)
T 3ozx_A 380 ESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIA 453 (538)
T ss_dssp TSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHC
T ss_pred CCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHC
T ss_conf 2893-----2279999999999999970899899969865799999999999999999738989999958899-999968
Q ss_pred CCEEEEEC-CCEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 51768815-949999859998903798755209
Q 000576 1035 DELFLLKR-GGQEIYVGPLGRHSSHLIKYFEGN 1066 (1412)
Q Consensus 1035 D~llll~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1066 (1412)
|++++|.. .|.....++...-...+..|+..+
T Consensus 454 Dri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 454 DRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp SEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred CEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=427.29 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=154.7
Q ss_pred EEECCEEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 5400307777188-----09999767999844699646199778707899999693078101121577861588889998
Q 000576 841 VLLNSVSGAFRPG-----VLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQV 915 (1412)
Q Consensus 841 ~iL~~is~~i~pG-----~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~l 915 (1412)
..++++|+.+++| |.++|+|+||||||||+++|+|.... .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999987207999998899999999999929920101002799887779888878999999960996899959999
Q 000576 916 TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 995 (1412)
Q Consensus 916 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs 995 (1412)
||+|.+... .+. .... ...++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCCC---HHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3246---899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 999999999999999998-57998999955885899986451768815-949999859998903798755209
Q 000576 996 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKR-GGQEIYVGPLGRHSSHLIKYFEGN 1066 (1412)
Q Consensus 996 gLD~~ta~~i~~~l~~~~-~~g~Tvi~t~Hqps~~i~~~fD~llll~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1066 (1412)
|||..+...+++.|+++. +.|.|||+++|+.. ++....|++++|.. .|+++..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=344.68 Aligned_cols=214 Identities=26% Similarity=0.378 Sum_probs=178.7
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 71689951012231440123115457750540030777718809999767999844699646199778707899999693
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~ 891 (1412)
...++|+|++++++.. +...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCH-------HHHCCCCC
Q ss_conf 0781---0112157786158888999899999999987207999998899999999999929920-------10100279
Q 000576 892 PKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-------LRQALVGL 961 (1412)
Q Consensus 892 ~~~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~vg~ 961 (1412)
++++ ..+++.++||+|+..++ +.|++|++.|.. ++.+++ .+.++++..++.+ --|+.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE
Q ss_conf 98877798888789999999609968999599999999999999999999985799899995588589998645176881
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~ 1041 (1412)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++ .....|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 59499998599
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~vy~G~~ 1052 (1412)
+|+++..|+-
T Consensus 627 -~G~ive~Gth 636 (1321)
T 4f4c_A 627 -NGQVVEVGDH 636 (1321)
T ss_dssp -TTEEEEEECH
T ss_pred -CCEEECCCCH
T ss_conf -9965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=336.94 Aligned_cols=197 Identities=25% Similarity=0.398 Sum_probs=144.1
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC-CC---EEE------EEEEECCCCCCCCC----
Q ss_conf 540030777718809999767999844699---------64619977-87---078------99999693078101----
Q 000576 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLM---------DVLAGRKT-TG---YVT------GNITISGYPKKQET---- 897 (1412)
Q Consensus 841 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl---------~~L~gr~~-~~---~~~------G~I~i~G~~~~~~~---- 897 (1412)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... .+ .+. +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred --C--------------------------------------CCEEEEECCCCCCCC------------------------
Q ss_conf --1--------------------------------------215778615888899------------------------
Q 000576 898 --F--------------------------------------ARISGYCEQNDIHSP------------------------ 913 (1412)
Q Consensus 898 --~--------------------------------------~~~~~yv~Q~d~~~~------------------------ 913 (1412)
+ ..-.||+.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------989999999998720799999889999999999992992010100279988777988887899999996099
Q 000576 914 --------QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANP 985 (1412)
Q Consensus 914 --------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p 985 (1412)
.+||.|++.|.... .....+.++++.++|... ..|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHH---HCCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------058999999998188633---31687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf ---68999599999999999999999999985799899995588589998645176881-----59499998599
Q 000576 986 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-----RGGQEIYVGPL 1052 (1412)
Q Consensus 986 ---~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~-----~gG~~vy~G~~ 1052 (1412)
++++|||||+|||..+...+++.|+++.+.|.|||++.|+.+ .....|+++.|. ++|+++..|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 889789997988899999999999999999966998999937999--9972999999668777789789997699
Done!