Query 000578
Match_columns 1412
No_of_seqs 366 out of 1454
Neff 6.7
Searched_HMMs 46136
Date Mon Apr 1 20:02:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 5E-167 1E-171 1606.8 76.5 1223 5-1412 1510-2806(2806)
2 KOG0890 Protein kinase of the 100.0 1E-143 3E-148 1385.4 77.4 1191 11-1412 1080-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 1E-88 2.2E-93 906.4 46.4 1043 183-1412 1129-2341(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 2.8E-71 6E-76 760.6 60.1 1034 183-1412 921-2105(2105)
5 cd05171 PIKKc_ATM Ataxia telan 100.0 9.8E-69 2.1E-73 612.3 26.6 274 1052-1329 1-279 (279)
6 cd05170 PIKKc_SMG1 Suppressor 100.0 4E-67 8.6E-72 605.6 25.7 276 1052-1328 1-306 (307)
7 cd05163 TRRAP TRansformation/t 100.0 2.3E-66 4.9E-71 583.3 23.9 247 1052-1328 1-252 (253)
8 cd05169 PIKKc_TOR TOR (Target 100.0 2.5E-66 5.5E-71 594.9 23.5 276 1052-1329 1-280 (280)
9 cd05172 PIKKc_DNA-PK DNA-depen 100.0 3.4E-64 7.4E-69 559.8 23.2 233 1052-1328 1-234 (235)
10 cd00892 PIKKc_ATR ATR (Ataxia 100.0 7E-63 1.5E-67 550.5 23.9 236 1052-1328 1-236 (237)
11 cd05164 PIKKc Phosphoinositide 100.0 2.2E-59 4.7E-64 517.9 23.5 222 1052-1322 1-222 (222)
12 cd00142 PI3Kc_like Phosphoinos 100.0 2.1E-54 4.6E-59 479.0 23.0 218 1053-1322 2-219 (219)
13 cd00891 PI3Kc Phosphoinositide 100.0 2.6E-53 5.6E-58 495.3 28.9 250 1032-1328 47-303 (352)
14 cd00896 PI3Kc_III Phosphoinosi 100.0 4.4E-53 9.6E-58 492.3 28.2 288 1032-1412 51-350 (350)
15 KOG0889 Histone acetyltransfer 100.0 3.3E-49 7.2E-54 522.9 63.3 974 331-1412 2414-3550(3550)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 2.1E-52 4.4E-57 486.5 28.7 248 1033-1328 48-304 (353)
17 cd05177 PI3Kc_C2_gamma Phospho 100.0 4.1E-51 8.9E-56 472.9 27.9 265 1016-1329 33-306 (354)
18 cd05165 PI3Kc_I Phosphoinositi 100.0 6.7E-51 1.4E-55 473.0 28.9 251 1032-1328 52-316 (366)
19 cd05168 PI4Kc_III_beta Phospho 100.0 1.2E-51 2.7E-56 468.8 20.9 268 1065-1410 15-287 (293)
20 smart00146 PI3Kc Phosphoinosit 100.0 2.6E-51 5.5E-56 449.1 19.5 199 1082-1330 1-200 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 7.2E-49 1.6E-53 454.4 26.0 247 1032-1325 53-312 (365)
22 cd05174 PI3Kc_IA_delta Phospho 100.0 1.1E-48 2.3E-53 452.3 24.8 249 1033-1326 52-309 (361)
23 cd05176 PI3Kc_C2_alpha Phospho 100.0 3.6E-48 7.8E-53 446.0 29.0 286 992-1327 9-303 (353)
24 cd00893 PI4Kc_III Phosphoinosi 100.0 5.7E-49 1.2E-53 446.3 21.0 222 1060-1328 9-238 (289)
25 cd05173 PI3Kc_IA_beta Phosphoi 100.0 3.3E-48 7.1E-53 450.0 27.6 250 1033-1328 52-311 (362)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 3.6E-49 7.8E-54 443.4 16.0 229 1080-1328 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 3.3E-47 7.1E-52 434.8 23.8 270 1056-1409 15-304 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 5E-45 1.1E-49 420.2 28.0 244 1033-1324 49-301 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 3E-44 6.6E-49 413.9 27.5 246 1033-1325 52-313 (366)
30 KOG0906 Phosphatidylinositol 3 100.0 6.9E-36 1.5E-40 348.7 28.4 286 986-1331 497-792 (843)
31 PF02259 FAT: FAT domain; Int 100.0 1.7E-33 3.6E-38 333.6 29.7 317 509-921 1-352 (352)
32 KOG0905 Phosphoinositide 3-kin 100.0 4.2E-32 9E-37 331.2 20.8 289 991-1328 1001-1298(1639)
33 KOG0904 Phosphatidylinositol 3 100.0 5.7E-32 1.2E-36 324.6 17.8 249 1034-1328 766-1027(1076)
34 KOG0903 Phosphatidylinositol 4 99.9 1.2E-25 2.6E-30 268.8 20.3 196 1079-1321 586-786 (847)
35 KOG0902 Phosphatidylinositol 4 99.9 3.8E-25 8.2E-30 276.0 19.7 205 1083-1335 1548-1758(1803)
36 PTZ00303 phosphatidylinositol 99.9 7.6E-25 1.7E-29 257.8 13.1 165 1066-1288 1026-1201(1374)
37 PF02260 FATC: FATC domain; I 99.3 3.4E-13 7.4E-18 103.1 1.2 32 1381-1412 2-33 (33)
38 KOG0892 Protein kinase ATM/Tel 98.8 1.1E-08 2.3E-13 138.2 12.4 232 1072-1330 2182-2416(2806)
39 TIGR02917 PEP_TPR_lipo putativ 95.0 2.3 4.9E-05 56.5 24.0 318 336-749 571-898 (899)
40 TIGR02917 PEP_TPR_lipo putativ 92.9 40 0.00086 44.7 29.4 95 681-790 737-831 (899)
41 PLN03081 pentatricopeptide (PP 84.4 82 0.0018 41.7 22.6 289 382-751 261-557 (697)
42 PRK10747 putative protoheme IX 84.4 1.1E+02 0.0023 37.8 22.1 58 681-747 329-386 (398)
43 PLN03218 maturation of RBCL 1; 84.3 1.1E+02 0.0024 42.6 24.0 84 381-493 473-566 (1060)
44 PF13575 DUF4135: Domain of un 84.2 7.6 0.00017 47.2 11.9 112 1075-1263 67-178 (370)
45 PRK15174 Vi polysaccharide exp 83.3 1.3E+02 0.0029 39.5 23.6 116 334-493 44-168 (656)
46 PLN03218 maturation of RBCL 1; 76.8 1.1E+02 0.0025 42.4 20.3 299 334-709 474-783 (1060)
47 TIGR02906 spore_CotS spore coa 73.5 45 0.00097 39.0 13.6 30 1229-1260 185-214 (313)
48 PRK11447 cellulose synthase su 71.1 4.5E+02 0.0098 37.2 28.0 65 680-752 637-701 (1157)
49 PLN03081 pentatricopeptide (PP 69.9 1.3E+02 0.0027 40.0 18.0 283 335-709 262-557 (697)
50 PF13432 TPR_16: Tetratricopep 69.4 20 0.00043 31.5 7.2 61 685-753 2-62 (65)
51 cd05145 RIO1_like RIO kinase f 69.3 5.7 0.00012 43.3 4.4 48 1236-1307 142-189 (190)
52 PRK15174 Vi polysaccharide exp 66.1 3.4E+02 0.0073 35.9 20.5 67 679-753 283-349 (656)
53 PF14559 TPR_19: Tetratricopep 65.4 12 0.00027 32.9 5.1 55 691-753 2-56 (68)
54 cd05147 RIO1_euk RIO kinase fa 62.6 4.6 0.0001 44.3 2.1 25 1236-1262 142-166 (190)
55 KOG0608 Warts/lats-like serine 61.6 6.9 0.00015 49.4 3.4 38 1222-1262 739-778 (1034)
56 TIGR00990 3a0801s09 mitochondr 61.4 2.7E+02 0.0058 36.3 18.4 52 691-750 519-570 (615)
57 PF08424 NRDE-2: NRDE-2, neces 58.4 81 0.0018 37.7 11.7 97 640-737 83-211 (321)
58 PF12688 TPR_5: Tetratrico pep 56.5 23 0.00049 36.2 5.7 84 413-523 9-92 (120)
59 TIGR03843 conserved hypothetic 56.4 8.8 0.00019 43.4 2.9 45 1222-1267 134-178 (253)
60 PLN03077 Protein ECB2; Provisi 55.3 7E+02 0.015 33.9 23.3 64 680-751 657-720 (857)
61 KOG3365 NADH:ubiquinone oxidor 55.2 7.3 0.00016 39.9 1.9 37 1365-1411 93-129 (145)
62 TIGR03724 arch_bud32 Kae1-asso 54.6 16 0.00035 39.6 4.7 24 1235-1260 113-136 (199)
63 KOG1129 TPR repeat-containing 53.6 1.1E+02 0.0024 36.3 11.0 85 336-435 227-320 (478)
64 PRK10370 formate-dependent nit 52.7 1.3E+02 0.0029 33.2 11.5 68 678-753 71-141 (198)
65 PF13371 TPR_9: Tetratricopept 52.2 65 0.0014 28.7 7.5 59 688-754 3-61 (73)
66 PRK14879 serine/threonine prot 52.0 22 0.00048 38.9 5.3 23 1236-1260 119-141 (211)
67 PRK11788 tetratricopeptide rep 51.7 4.9E+02 0.011 31.1 27.3 95 683-789 252-349 (389)
68 cd05151 ChoK Choline Kinase (C 51.5 12 0.00025 39.4 2.8 30 1230-1261 106-135 (170)
69 PF13414 TPR_11: TPR repeat; P 50.1 64 0.0014 28.5 7.1 63 680-750 3-66 (69)
70 KOG0616 cAMP-dependent protein 49.8 11 0.00023 44.0 2.3 36 1225-1261 153-192 (355)
71 PF02985 HEAT: HEAT repeat; I 48.9 21 0.00045 27.1 3.1 29 94-122 1-29 (31)
72 cd04792 LanM-like LanM-like pr 47.3 2E+02 0.0043 39.0 14.2 108 1076-1263 111-218 (825)
73 PLN03077 Protein ECB2; Provisi 47.0 9.1E+02 0.02 32.8 27.3 80 380-488 323-408 (857)
74 KOG0594 Protein kinase PCTAIRE 46.5 14 0.00031 43.7 2.8 28 1236-1264 144-171 (323)
75 TIGR02795 tol_pal_ybgF tol-pal 46.1 1.5E+02 0.0033 28.5 9.7 83 682-769 4-86 (119)
76 PF13428 TPR_14: Tetratricopep 45.2 51 0.0011 26.9 5.1 39 725-766 4-42 (44)
77 PF14559 TPR_19: Tetratricopep 44.9 33 0.00073 30.1 4.4 52 417-498 3-54 (68)
78 cd05144 RIO2_C RIO kinase fami 44.2 17 0.00037 39.7 2.8 29 1235-1264 148-176 (198)
79 COG0661 AarF Predicted unusual 43.6 15 0.00032 46.7 2.5 48 1091-1149 207-256 (517)
80 KOG1006 Mitogen-activated prot 42.7 19 0.00042 41.4 2.9 59 1236-1295 192-268 (361)
81 PF04781 DUF627: Protein of un 42.5 56 0.0012 32.9 5.7 63 727-790 1-65 (111)
82 PF13176 TPR_7: Tetratricopept 42.0 34 0.00074 26.8 3.4 24 410-433 4-27 (36)
83 PRK04750 ubiB putative ubiquin 42.0 14 0.00031 47.0 2.0 24 1236-1260 284-311 (537)
84 cd05119 RIO RIO kinase family, 41.9 18 0.00039 38.8 2.5 26 1235-1262 138-163 (187)
85 PRK10359 lipopolysaccharide co 41.5 17 0.00036 41.4 2.2 22 1236-1259 159-180 (232)
86 smart00090 RIO RIO-like kinase 39.7 21 0.00045 40.7 2.7 27 1236-1264 173-199 (237)
87 PF06293 Kdo: Lipopolysacchari 38.0 46 0.00099 36.9 5.0 48 1096-1152 56-111 (206)
88 TIGR01982 UbiB 2-polyprenylphe 37.9 21 0.00046 44.5 2.6 24 1236-1260 281-304 (437)
89 TIGR02552 LcrH_SycD type III s 37.1 1.9E+02 0.0041 29.0 9.0 67 679-753 50-116 (135)
90 PF01636 APH: Phosphotransfera 37.1 22 0.00049 38.9 2.4 32 1229-1260 164-195 (239)
91 KOG3087 Serine/threonine prote 35.9 1.7E+02 0.0037 32.6 8.5 28 1236-1263 137-166 (229)
92 cd00189 TPR Tetratricopeptide 33.7 2.5E+02 0.0055 24.3 8.5 62 683-752 3-64 (100)
93 PF01163 RIO1: RIO1 family; I 33.3 15 0.00033 40.3 0.3 27 1236-1264 131-157 (188)
94 PRK12274 serine/threonine prot 33.2 32 0.0007 38.7 2.8 25 1236-1261 115-140 (218)
95 KOG0603 Ribosomal protein S6 k 32.5 31 0.00067 44.0 2.7 45 1233-1282 436-480 (612)
96 PRK01723 3-deoxy-D-manno-octul 32.3 32 0.00069 39.2 2.6 26 1235-1261 165-190 (239)
97 PF13424 TPR_12: Tetratricopep 30.9 1.3E+02 0.0028 27.2 6.0 70 679-749 4-73 (78)
98 PF13525 YfiO: Outer membrane 30.6 3.4E+02 0.0074 29.9 10.4 82 681-767 6-87 (203)
99 PRK11447 cellulose synthase su 30.2 1.8E+03 0.039 31.4 31.6 79 681-770 462-540 (1157)
100 PRK15179 Vi polysaccharide bio 30.2 5.8E+02 0.013 34.0 13.8 148 225-495 33-180 (694)
101 cd05156 ChoK_euk Choline Kinas 30.1 37 0.00081 39.7 2.8 32 1229-1260 177-211 (302)
102 PF13414 TPR_11: TPR repeat; P 30.1 1E+02 0.0022 27.1 5.1 48 410-487 8-56 (69)
103 cd05120 APH_ChoK_like Aminogly 29.1 45 0.00098 33.3 2.9 25 1236-1261 113-137 (155)
104 COG3642 Mn2+-dependent serine/ 27.8 47 0.001 36.7 2.8 33 1118-1151 57-91 (204)
105 PF13429 TPR_15: Tetratricopep 27.6 52 0.0011 38.0 3.4 87 334-436 80-177 (280)
106 cd05154 ACAD10_11_like Acyl-Co 26.8 47 0.001 36.3 2.7 32 1229-1260 172-204 (223)
107 PF13432 TPR_16: Tetratricopep 26.6 1.2E+02 0.0026 26.4 4.8 50 412-491 4-53 (65)
108 TIGR02521 type_IV_pilW type IV 26.5 3.9E+02 0.0086 28.4 10.0 85 335-433 34-127 (234)
109 PF13513 HEAT_EZ: HEAT-like re 26.2 85 0.0018 26.7 3.6 34 87-120 22-55 (55)
110 TIGR02795 tol_pal_ybgF tol-pal 26.1 3.5E+02 0.0076 25.9 8.6 69 682-755 41-109 (119)
111 PRK10866 outer membrane biogen 25.3 4.5E+02 0.0098 30.1 10.4 82 680-766 32-113 (243)
112 PF04184 ST7: ST7 protein; In 25.3 1.8E+02 0.0038 36.7 7.2 32 722-753 259-290 (539)
113 PF06176 WaaY: Lipopolysacchar 25.2 56 0.0012 37.1 2.9 21 1236-1258 159-179 (229)
114 TIGR03302 OM_YfiO outer membra 25.1 4.5E+02 0.0098 29.1 10.3 83 680-767 33-115 (235)
115 KOG0994 Extracellular matrix g 25.1 1.1E+03 0.024 32.9 14.3 36 894-929 1476-1511(1758)
116 PRK10803 tol-pal system protei 24.1 4.6E+02 0.01 30.5 10.2 81 682-767 144-225 (263)
117 PF06702 DUF1193: Protein of u 23.5 98 0.0021 34.9 4.3 91 1222-1325 91-183 (221)
118 PRK15359 type III secretion sy 23.1 5.1E+02 0.011 26.9 9.5 67 679-753 57-123 (144)
119 PRK05685 fliS flagellar protei 22.8 5.3E+02 0.012 26.7 9.4 49 547-595 38-93 (132)
120 cd05155 APH_ChoK_like_1 Unchar 22.1 68 0.0015 36.1 2.9 29 1230-1260 163-192 (235)
121 PF12688 TPR_5: Tetratrico pep 21.9 3.2E+02 0.0069 27.9 7.4 62 679-745 37-98 (120)
122 PRK09605 bifunctional UGMP fam 21.8 1.1E+02 0.0024 39.2 5.0 25 1235-1261 451-475 (535)
123 PF00069 Pkinase: Protein kina 21.6 79 0.0017 35.2 3.3 25 1236-1261 122-146 (260)
124 KOG0598 Ribosomal protein S6 k 21.1 48 0.001 39.8 1.4 25 1236-1261 149-173 (357)
125 PF02561 FliS: Flagellar prote 21.0 5.8E+02 0.013 25.8 9.1 49 547-595 32-87 (122)
126 TIGR02172 Fb_sc_TIGR02172 Fibr 20.8 67 0.0015 36.3 2.5 25 1234-1260 156-180 (226)
127 PF13371 TPR_9: Tetratricopept 20.8 2.1E+02 0.0046 25.3 5.4 52 413-494 3-54 (73)
128 PF09976 TPR_21: Tetratricopep 20.6 2.3E+02 0.005 29.2 6.3 62 682-748 50-111 (145)
129 PF07719 TPR_2: Tetratricopept 20.5 97 0.0021 23.0 2.6 25 412-436 8-32 (34)
130 cd07655 F-BAR_PACSIN The F-BAR 20.5 4.9E+02 0.011 30.1 9.5 35 882-916 215-249 (258)
131 cd05157 ETNK_euk Ethanolamine 20.3 1.2E+02 0.0025 33.9 4.3 33 1229-1261 168-200 (235)
132 TIGR03504 FimV_Cterm FimV C-te 20.1 1.8E+02 0.0038 24.5 4.1 39 725-764 2-40 (44)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.7e-167 Score=1606.83 Aligned_cols=1223 Identities=39% Similarity=0.574 Sum_probs=980.0
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCc
Q 000578 5 VDWHSDHDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDA 84 (1412)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1412)
.+|+.+++++..+|..+++-....+-+.....-+|+.+++..|+|.++|++|+..+++|+-.-..+. .+.-+.-.+-.
T Consensus 1510 ~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~--~~~n~~~~~K~ 1587 (2806)
T KOG0892|consen 1510 WFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFF--EGSNIMELTKN 1587 (2806)
T ss_pred hHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhcc--ccchhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999999998877754432222 23333444556
Q ss_pred cchHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHHhhccCcchhHHhhhhhhhhhh
Q 000578 85 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 164 (1412)
Q Consensus 85 ~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~ilst~~g~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~ 164 (1412)
++.++........+..+..+..+.+.....++....+++-.+......+..|.+.+++++
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------------------- 1647 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------------------- 1647 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchh--------------------
Confidence 778888888888899999999999999999999999998888887777787777776632
Q ss_pred hcCCCCCCCCcccccCCCcHHhhHHHHHHHhhccCCchhhhhhHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHH
Q 000578 165 KANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLIS 244 (1412)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~~~d~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls 244 (1412)
|.++......|++.++..+|-.+.+.. |..+....-.+-+.++|.+.. +
T Consensus 1648 ------------~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~--------n-------- 1696 (2806)
T KOG0892|consen 1648 ------------LSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLK--------N-------- 1696 (2806)
T ss_pred ------------hccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhcccc--------c--------
Confidence 445555678999999988875333322 444444444444444444321 0
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHhHhhHhhcccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccc
Q 000578 245 SQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTS 324 (1412)
Q Consensus 245 ~~~~~~~~~~s~~~~~~iq~~l~~l~~LR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~t~ 324 (1412)
.-....+-+|.+.++|.+ .+-. .-+.
T Consensus 1697 -------------~~~~~~m~~ni~~~~~~~---~~~~--------------------------------------~~n~ 1722 (2806)
T KOG0892|consen 1697 -------------SNSIFKMDMNILKYLRRQ---LGCH--------------------------------------AFNP 1722 (2806)
T ss_pred -------------hhHHHHHHHHHHHHHHHh---hchh--------------------------------------hhcc
Confidence 011233445666666654 1110 0123
Q ss_pred cccccccccCHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccc
Q 000578 325 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ 404 (1412)
Q Consensus 325 ~d~~~wL~Id~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~ 404 (1412)
|...+|+++++...+-++.+|.+|-..++|.=+.-.+ ..+........+++|.+||+.|++||++||+..
T Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----------~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~ 1792 (2806)
T KOG0892|consen 1723 FEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----------NKRDELDITLLQDILKKAYESINCPDALYGIKR 1792 (2806)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----------cchhHHHHHHHHHHHHHHHhhCCCcchhcccCC
Confidence 4456688888888888888888887777766542111 111122223456677777999999999999998
Q ss_pred ccchh-hHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhc
Q 000578 405 SHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1412)
Q Consensus 405 ~~~l~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG 483 (1412)
...++ .++..+|||++|.+||..||..-. .|+ + + ...|.+++|++.|
T Consensus 1793 ~~~~~~~~l~~~~he~~w~~aL~~~d~~~~------------------~~s-----s--~-------~~~~~~~sLq~~g 1840 (2806)
T KOG0892|consen 1793 PTSLKNLILITAEHEKNWPRALSYYDLADM------------------YPS-----S--E-------DEAGFINSLQNAG 1840 (2806)
T ss_pred cccccccccchhhhhhhHHHHHHhhcchhh------------------ccc-----h--H-------hHhHHHHHHHHhc
Confidence 88777 789999999999999999998753 133 1 1 2489999999999
Q ss_pred hhhHHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHH
Q 000578 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1412)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~~f 563 (1412)
+.|++.+|++|++... ..++++..+..|++|||+|+||...+++-+ .....+.-||+.+|.+|+|+++++++++
T Consensus 1841 ~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~ 1914 (2806)
T KOG0892|consen 1841 FFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGS 1914 (2806)
T ss_pred chhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999876 577889999999999999999986654311 1345667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhcc-CCccccccccccccCCCCCcchhhhhHHH
Q 000578 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSS-GESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1412)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1412)
..+|+.+|...+..++..+.||....|+++.+||.+.+||.++++.+.+. +...-....+.....++..+..+.++.+.
T Consensus 1915 yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~ 1994 (2806)
T KOG0892|consen 1915 YLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADKHQSNTDILQKWKTNLQLSSQLMECLSLLI 1994 (2806)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcchhhhhHHHHHHHHHHhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877432 11000111111111122223444566666
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhh
Q 000578 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYW 722 (1412)
Q Consensus 643 ~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~ 722 (1412)
..|+..+...+.+..+-++.++.+..++...++....+..-+..+.+.++-.+ .+.+...+.+.++
T Consensus 1995 ~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r--~~~~i~~~~~~~~------------ 2060 (2806)
T KOG0892|consen 1995 EDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIAR--AFPVIMLSIKLLC------------ 2060 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHH--hhHHHHHHHHHHh------------
Confidence 77777776666666777777777777777767666666555555555555444 2333344433332
Q ss_pred hhhHHHHHHHHHCCChHHHHHHHHHH--------------HhhccCCCchhHHHHHHhHhHhhhhcCChHHHHHhhhhhh
Q 000578 723 LGRLEEAKLLRAQGQHEMAINLAKYI--------------SENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPA 788 (1412)
Q Consensus 723 ~a~iE~AklLWaqGe~~~AI~~Lq~l--------------~~~~~~~~~~a~ll~llg~Wlaetr~e~p~~I~~~Yl~~a 788 (1412)
.++.|+..|+++....+-.+|-.. .++........+.++.+|+|++|+++|+|..|+++|+++|
T Consensus 2061 --~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a 2138 (2806)
T KOG0892|consen 2061 --KFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKWLAETKSENSALISEKYLEKA 2138 (2806)
T ss_pred --hhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 233444444444333332222111 1222222345788999999999999999999999999999
Q ss_pred cccccccccch-hhHHHHhhhhhhhHHHhHHHHHhhHHHHhchHHHHHHHHHHHhhHHHHHHHHHHHhhcccccchhhhH
Q 000578 789 VSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSI 867 (1412)
Q Consensus 789 ~~l~~~~~~~~-~~~~~~~~~~~~~la~f~D~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~y~~ 867 (1412)
+..++.+.... +........+++++|+|.|.+|+.+++|+++.+|+.++++++...++++.+.+.-.. .++ .
T Consensus 2139 ~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q----~~~---~ 2211 (2806)
T KOG0892|consen 2139 VSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQ----MRK---N 2211 (2806)
T ss_pred HHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHH----HHH---H
Confidence 98887663222 222344578999999999999999999999999999999999999998866544321 111 2
Q ss_pred HHHHHHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHhhccCcchHHHHHHHHHhHHH-----
Q 000578 868 KIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDE----- 942 (1412)
Q Consensus 868 ~~~~~~~~~~~d~~e~~~l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~~R~~sLW~~~~~~~~~~~~~~~~~~~----- 942 (1412)
+..+.++++.+|+++++++..+|++||++|++||++|+..|++||.+.++|+|+|||+|+..+++|+.|.+.+.+
T Consensus 2212 ~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyK 2291 (2806)
T KOG0892|consen 2212 HHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYK 2291 (2806)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcch
Confidence 345678999999999999999999999999999999999999999999999999999999999998888765432
Q ss_pred ------------------------------------------HHhhhccCc-cccccccccccccchhHHHHHHHHHHHH
Q 000578 943 ------------------------------------------LLALANGDR-IKDKQRSRNSFVVDMDKKLAAENLLEEL 979 (1412)
Q Consensus 943 ------------------------------------------l~al~~~~~-~~~~~~~~~~~~~~~~~~~aa~~i~~~~ 979 (1412)
|+++.++.+ .+..+++|.+ ++++|+.+|+.++...
T Consensus 2292 Fip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~s--l~~~rki~a~l~~~~v 2369 (2806)
T KOG0892|consen 2292 FIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGS--IDRDRKIAAELDLCDV 2369 (2806)
T ss_pred hHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccc--cchhHHHHHHHhhhHh
Confidence 455666655 3344566664 6789999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhccccccccc-ccchhhhh--hhhcccccccccccccCCCCccccCCCCccccccC
Q 000578 980 SSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPREIR--CLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA 1056 (1412)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~-~~l~~~~~--~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~~~ 1056 (1412)
....+.++++++.+|++||.||++++...++.++ +.+|.... ...+++.+|+||+++++++++.| +++|+|.+|.
T Consensus 2370 ~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~pT~ev~v~~s~~~--~~~p~i~s~~ 2447 (2806)
T KOG0892|consen 2370 NQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPPTMNVKVNDSGDY--GNIPTVVSFD 2447 (2806)
T ss_pred hccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCCCCCccccCCccc--CCCceEEecc
Confidence 9999999999999999999999988777776666 66666544 44567888999999999988755 5589999999
Q ss_pred CeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCcc
Q 000578 1057 ESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1136 (1412)
Q Consensus 1057 ~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GL 1136 (1412)
++|.+++|++.||+|+|+||||++|++|+|+|+||||||++|+|+|+++|++|.++++|++|+|.||||+||||+|++|+
T Consensus 2448 ~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGv 2527 (2806)
T KOG0892|consen 2448 DTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGV 2527 (2806)
T ss_pred cceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchH-----hHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000578 1137 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFLQPAY 1211 (1412)
Q Consensus 1137 IE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~-----~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1211 (1412)
||||.||+||++||.... +|+|+||+|.+|++.+||+.|.+.+ +|+++|.+||.+++||||+||+|+||+|.+
T Consensus 2528 lEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~ 2605 (2806)
T KOG0892|consen 2528 LEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPAD 2605 (2806)
T ss_pred eecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHH
Confidence 999999999999997543 8999999999999999999998776 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccccccccc
Q 000578 1212 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1291 (1412)
Q Consensus 1212 w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1291 (1412)
||++|++||||+|+.|||||||||||||.+|||||..||||||||||++||||+.+|+||+||||||||||||||+||||
T Consensus 2606 WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGve 2685 (2806)
T KOG0892|consen 2606 WFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVE 2685 (2806)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCcccccc-chhHHHHHHHHH
Q 000578 1292 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEG-NKDAERALIRVK 1370 (1412)
Q Consensus 1292 G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~a~~~l~rv~ 1370 (1412)
|+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+..+|++ ++....+.+........ +..|.|++.|++
T Consensus 2686 GvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~-e~~e~~n~~~~~~~~~~nd~~a~r~l~r~q 2764 (2806)
T KOG0892|consen 2686 GVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKE-EDEENFNLSGNITEDASNDRNAVRALMRAQ 2764 (2806)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHh-hcchhcccccchhhhhccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 33333333332222223 578999999999
Q ss_pred hhccCCCCCCccCHHHHHHHHHHHccChhhhhhhccccccCC
Q 000578 1371 QKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1371 ~kL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
+||.|.+.|..+||++||++||||||||+|||+|||||.||+
T Consensus 2765 ~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2765 RKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred HHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 999999999999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-143 Score=1385.44 Aligned_cols=1191 Identities=26% Similarity=0.396 Sum_probs=869.0
Q ss_pred hhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCccchHHH
Q 000578 11 HDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDAGISEEL 90 (1412)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1412)
+++.+.+=.|..=|-... +.+..+.|+||+.+|.-||.|--|+--+. ++.. -...+--+.+.-|-. .
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~-~~~~~~~akcLg~lgaidp~~~~~k~q~~---------i~~~--~~~~~~~~~~~~i~~-~ 1146 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKT-SQLEELCAKCLGELGAIDPSCHRFKEQET---------IPSI--LQVLPIECSDLPIKF-I 1146 (2382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhhhhcccc---------cchh--hhccccccCchhhhh-H
Confidence 455566666666555544 78888999999999999999877765311 1111 122233333333334 4
Q ss_pred HHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHHhhccCcchhHHhhhhhhhhhh-hcCCC
Q 000578 91 LIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF-KANGI 169 (1412)
Q Consensus 91 ~~~il~~l~~~l~~~~~~~~~~a~~~L~~ilst~~g~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 169 (1412)
......++.-+++..+..-.+.++.+.+.++. ..|..-....+.-.--+|+.+..-.-..+ .|.+++.+.. .....
T Consensus 1147 ~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~~~k~~~--~P~L~s~Y~sq~~~p~ 1223 (2382)
T KOG0890|consen 1147 DFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPNEVKEEM--EPTLTSRYASQKPEPS 1223 (2382)
T ss_pred HHHHHHHHHHHhcCcChhhhhHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHHHHHHHH--hhcccchhccCCCCCC
Confidence 56677888889999999999999999888887 22222111222222223332211111111 3333333320 11111
Q ss_pred CCCCCcccccCCCcHHhhHHHHHHHhhcc---C-CchhhhhhHHHHhccHhHHHHHhHHHHHHHhcCC--CcchhHHHHH
Q 000578 170 SPEKSTVWETDGKTFETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSK--NVDVDLQKLI 243 (1412)
Q Consensus 170 ~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~---~-~d~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~--d~~~~~~~~l 243 (1412)
.-...+++... .+|.+|+.+|+..|+.. + .++++.+|+.+...+-.++.+|+||++++|+... +..+++.+++
T Consensus 1224 ~~~k~Piy~~~-lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~ei 1302 (2382)
T KOG0890|consen 1224 VGEKKPIYKSS-LGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEI 1302 (2382)
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 12233444433 33999999999999954 3 3589999999999999999999999999985432 2245566666
Q ss_pred HHHHHhhhhhcc-----hhhhHHHHHHHHHHHHHhHhhHhhcccCCCCCcccccccccCCC---CCCCccchhhhhhhhh
Q 000578 244 SSQVQKYIFTES-----NKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGS---SAKPRSTSAKARDVVA 315 (1412)
Q Consensus 244 s~~~~~~~~~~s-----~~~~~~iq~~l~~l~~LR~~~~~e~~~~~p~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~ 315 (1412)
-.++++...+.- ....-.+|++|..++||..+-...+ +.+- ...+-+...+| +.-+..+. -.++++
T Consensus 1303 l~vl~~~~~~t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~-q~~~---~~k~~~sk~~R~~~~~~~~Tt~--~~~~~~ 1376 (2382)
T KOG0890|consen 1303 LSVLDEAATNTINSRGTASDRLCVQFVFYVLDYLYQWARHKK-QELA---EKKKIWSKVNRFWKSIMSWTTT--GEDIEG 1376 (2382)
T ss_pred HHHHhcccccccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHH---HhhhhHHHhhhhheeeeccccC--CCchhh
Confidence 666665332211 1225689999999999864310000 0000 00000111122 00011100 011122
Q ss_pred hcccccccccccccccccCHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCC
Q 000578 316 TSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINE 395 (1412)
Q Consensus 316 ~~~~~~~t~~d~~~wL~Id~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~Ide 395 (1412)
+ ..|..-||-.++|+|..+|++|++|+||+|.+-.. +.. .+...+...+|+.+|..|+|
T Consensus 1377 v----------~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~----------ek~-~~~~e~l~fllq~lY~~i~d 1435 (2382)
T KOG0890|consen 1377 V----------QSFLDLIPSDTLARASFRCKAYARALMYLESHRST----------EKE-KETEEALYFLLQNLYGSIHD 1435 (2382)
T ss_pred h----------HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccc----------cch-hHHHHHHHHHHHHHHHhcCC
Confidence 1 12455788899999999999999999999996110 110 11223445567779999999
Q ss_pred Ccccccccc----ccchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccch
Q 000578 396 PDSLYGIIQ----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKP 471 (1412)
Q Consensus 396 PD~~yGi~~----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~ 471 (1412)
|||+.|+.+ .+++..||..+|..|+|.+|.+|||..++.+ |+ +..+
T Consensus 1436 pDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~-----------------p~-------------~~~~ 1485 (2382)
T KOG0890|consen 1436 PDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQKD-----------------PD-------------KEKH 1485 (2382)
T ss_pred cchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCC-----------------Cc-------------cccc
Confidence 999999976 4689999999999999999999999999965 33 3356
Q ss_pred hhHHHHHHHhhchhhHHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhh-HHH
Q 000578 472 YKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN-LHS 550 (1412)
Q Consensus 472 ~~Gl~r~L~~lG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~-l~~ 550 (1412)
+.|+++|+.+.|+..+.-+.++|+..+.+ ++-.++.-+..|||||+++||.++.+.. ..+...|... +++
T Consensus 1486 ~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~ 1556 (2382)
T KOG0890|consen 1486 HSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWSVESIGK 1556 (2382)
T ss_pred hhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchhHHHHHH
Confidence 89999999999999999889999887653 5567888889999999999999887632 2234455555 899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCC
Q 000578 551 CLTALREGDSEEFYRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSE 629 (1412)
Q Consensus 551 aL~Al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~E-S~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~ 629 (1412)
++.+..++|.-.+++.|+.+|..++++|++++.| ||.++|+.++|||++.||+..++...+.+.+ +
T Consensus 1557 ~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~-------------~ 1623 (2382)
T KOG0890|consen 1557 LLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD-------------E 1623 (2382)
T ss_pred HHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------------c
Confidence 9999999999999999999999999999999988 9999999999999999999999865444321 0
Q ss_pred CCCcchhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhh---cCchHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000578 630 PVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQIL---SCKDFTMQHLLESASTLRKGFRLSQAAAALHEL 706 (1412)
Q Consensus 630 ~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il---~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l 706 (1412)
. ...-...|..|+++++..+...||||++|+.++.+. +.++.++++|+++|++||++|+++.|++||..+
T Consensus 1624 ~-------s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1624 D-------SANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred c-------ccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 0 011226899999999999999999999999999874 347789999999999999999999999999887
Q ss_pred HhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhc-cCC---------Cc----hhHHHHHHhHhHhhh
Q 000578 707 KFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY-ESN---------EE----APDVYRLVGKWLAES 772 (1412)
Q Consensus 707 ~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~-~~~---------~~----~a~ll~llg~Wlaet 772 (1412)
+..+. | .+.+|.||++|.+|+...|+..||.++.+. +.. .. ...++.++|+|+.|+
T Consensus 1697 ~e~r~-------~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es 1766 (2382)
T KOG0890|consen 1697 KESRL-------P---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEES 1766 (2382)
T ss_pred hhccc-------c---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHh
Confidence 65421 1 346999999999999999999999887543 221 00 135678999999999
Q ss_pred hcCChHHHHHhhhhhhcccccccccchhhHHHHhhhhhhhHHHhHHHHHhhHHHHhchHHHHHHHHHHHhhHHHHHHHHH
Q 000578 773 RSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIK 852 (1412)
Q Consensus 773 r~e~p~~I~~~Yl~~a~~l~~~~~~~~~~~~~~~~~~~~~la~f~D~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~ 852 (1412)
......+|++.|.+ +..+ ..++.+.||++|+|+|..+-... .+
T Consensus 1767 ~n~~s~~ilk~Y~~-~~ai-----------l~ewe~~hy~l~~yy~kll~~~~----~~--------------------- 1809 (2382)
T KOG0890|consen 1767 GNFESKDILKYYHD-AKAI-----------LPEWEDKHYHLGKYYDKLLEDYK----SN--------------------- 1809 (2382)
T ss_pred cchhHHHHHHHHHH-HHHH-----------cccccCceeeHHHHHHHHhhhhh----cc---------------------
Confidence 99999999999987 4322 12356899999999998877531 00
Q ss_pred HHhhcccccchhhhHHHHHHHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHhhccCcch---
Q 000578 853 RLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSR--- 929 (1412)
Q Consensus 853 ~~~~~~~~~~~~y~~~~~~~~~~~~~d~~e~~~l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~~R~~sLW~~~~~~--- 929 (1412)
+.+ ++ +....||. ++.+|.+++.+|+++.++++||++||||++|..
T Consensus 1810 ------~~E------------~~------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1810 ------KME------------KS------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred ------ccc------------cc------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 000 00 11224777 999999999999999999999999999997532
Q ss_pred ------HHHHHH----HHHhHH----------------HHHhh-hccC-ccc-------------ccccccccc--c---
Q 000578 930 ------QNVIKN----MVDTID----------------ELLAL-ANGD-RIK-------------DKQRSRNSF--V--- 963 (1412)
Q Consensus 930 ------~~~~~~----~~~~~~----------------~l~al-~~~~-~~~-------------~~~~~~~~~--~--- 963 (1412)
.+.+.. |.+.+. +|+++ .+.+ .+. -++..-+.. +
T Consensus 1859 ~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS 1938 (2382)
T KOG0890|consen 1859 VEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKS 1938 (2382)
T ss_pred cccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhc
Confidence 222221 111111 12221 1110 000 001100000 0
Q ss_pred cchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhhcc-----cccccc---
Q 000578 964 VDMDKKLAAENLLEELSSY---HGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQL-----ELVPVV--- 1032 (1412)
Q Consensus 964 ~~~~~~~aa~~i~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~l~~~~~~l~~l-----~~~p~~--- 1032 (1412)
.-..|+..++.|+.+.+.. ...++.+...+.+.++.|++-+.. .+.+..+++..++.+... .++|+.
T Consensus 1939 ~~p~R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~--~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M 2016 (2382)
T KOG0890|consen 1939 NVPSRVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVN--SSSKVLSLKTDFRKLVMNRRFSDILIPLQSIM 2016 (2382)
T ss_pred ccHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCC--cccccccHHHHHHHhccccChhhhhhhHhhhc
Confidence 0124677788888865432 345666777888899999885432 244566777776644322 134432
Q ss_pred cccccCCCC---ccccC----CCCccccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHH
Q 000578 1033 TATVPIDCT---CQYNE----GSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLV 1105 (1412)
Q Consensus 1033 t~~lp~~~~---~~y~~----~~~~~i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~li 1105 (1412)
...+|.-+. ..+.. +..|+|.+|.+.|+|++|.++||+|.++||||+.|.+|||+ +||||+|.|+|+|..+|
T Consensus 2017 ~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKp-KDDLRKD~RlMeFn~li 2095 (2382)
T KOG0890|consen 2017 DPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKP-KDDLRKDARLMEFNELI 2095 (2382)
T ss_pred ccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCc-hhhhhhhhHHHHHHHHH
Confidence 223443222 11111 23457999999999999999999999999999999999997 79999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhc----chH
Q 000578 1106 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS----NVK 1181 (1412)
Q Consensus 1106 N~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~----~~~ 1181 (1412)
|.+|.+|.++|||+|+||||+||||+..|||||||||+.+|++|+.+.+...| .+.+. .+++..+- ...
T Consensus 2096 n~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg---~~~~~----~~l~~~~~~~~~~~~ 2168 (2382)
T KOG0890|consen 2096 NKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRG---KWMIK----KQLRSVHLKKQMAKE 2168 (2382)
T ss_pred HHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhcc---ccchh----hHHHHhcCcHhhccc
Confidence 99999999999999999999999999999999999999999999988763322 12211 13332221 234
Q ss_pred hHHHHHH-HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchh
Q 000578 1182 DKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1182 ~k~~~f~-~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
++.++|. ++++++||||++||.++||+|..||..|.+|+||+||||||||||||||||++|||||..||++||+||+|.
T Consensus 2169 ~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCL 2248 (2382)
T KOG0890|consen 2169 EKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCL 2248 (2382)
T ss_pred chhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeeccc
Confidence 5778886 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCCccccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhc
Q 000578 1261 FEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKE 1340 (1412)
Q Consensus 1261 f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~ 1340 (1412)
|+||..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.||++|+.|+||||+.|.....+. .
T Consensus 2249 FnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~----s- 2323 (2382)
T KOG0890|consen 2249 FNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGR----S- 2323 (2382)
T ss_pred ccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCC----C-
Confidence 99999999999999999999999999999999999999999999999999999999999999999998532110 0
Q ss_pred ccccccCCCCCCccccccchhHHHHHHHHHhhccCCC--CCCccCHHHHHHHHHHHccChhhhhhhccccccCC
Q 000578 1341 MDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1341 ~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~--~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
....|.+ .+++.+|++|+.|.. +|-++||+|||+.||++|||++|||+||.||.|||
T Consensus 2324 --------------~~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2324 --------------PKKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred --------------cCcccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 0011222 568999999999955 57789999999999999999999999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=1e-88 Score=906.38 Aligned_cols=1043 Identities=25% Similarity=0.381 Sum_probs=748.8
Q ss_pred cHHhhHHHHHHHhhccCCchhhhhhHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhhHHH
Q 000578 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1412)
Q Consensus 183 s~~~Wi~~l~~~Ll~~~~d~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~s~~~~~~i 262 (1412)
.|.+|++...+.+++.++++++|+|..+...+..+|+.+||+++.+||.+.+ .+.+..+...+... ...+ ..++.+
T Consensus 1129 ~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~-~~~~-~i~e~~ 1204 (2341)
T KOG0891|consen 1129 DWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIA-LSSP-DIPEII 1204 (2341)
T ss_pred cccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHH-HhCC-ccHHHH
Confidence 4999999999999999999999999999999999999999999999999874 45555555555442 2222 233788
Q ss_pred HHHHHHHHHHhHhhHhhcccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000578 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1412)
Q Consensus 263 q~~l~~l~~LR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~t~~d~~~wL~Id~l~lA~AA 342 (1412)
|+++|. +||+++ + + + .|+|...+++..|
T Consensus 1205 q~l~nl---------~ef~eh-----~-~-----------------------------------~--plpi~~~~L~~~~ 1232 (2341)
T KOG0891|consen 1205 QTLLNL---------AEFMEH-----D-D-----------------------------------K--PLPIPIKTLGLYA 1232 (2341)
T ss_pred HhhhhH---------HHHHHh-----c-c-----------------------------------c--CCCcchhhHHHHH
Confidence 888776 455533 1 0 1 3566667999999
Q ss_pred HHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCccccccccc----cchhhHHHHHHhh
Q 000578 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEHE 418 (1412)
Q Consensus 343 ~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~----~~l~~~i~~yE~e 418 (1412)
..|++|++||+|.|+++.+. ...+.++.|+.|.+..+.+|.+-|+..+ ..+..+..|||+.
T Consensus 1233 ~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l 1297 (2341)
T KOG0891|consen 1233 EKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKL 1297 (2341)
T ss_pred HHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhccccc
Confidence 99999999999999987542 2367789999999999999999999753 3577788999999
Q ss_pred CCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhhhccccc
Q 000578 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1412)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~gl~~~ 498 (1412)
.+|++||..|+.....+.+ ......|.|+|+.++|.|..++...+..|..
T Consensus 1298 ~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~ 1347 (2341)
T KOG0891|consen 1298 HRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWEV 1347 (2341)
T ss_pred ccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCCC
Confidence 9999999999987764321 1124679999999999999887554444433
Q ss_pred cCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 000578 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSV 578 (1412)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~~f~~~i~~aR~~l~~~L 578 (1412)
.+ .+.+..+++.+..+||.+++||.+..|. +.++..+++ ...+++..++|.++++.+...+..+|+.++.++
T Consensus 1348 ~~-~~~~~~~ap~a~~~~~~~~~w~~~~~~~--s~~~~~~~~-----~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~ 1419 (2341)
T KOG0891|consen 1348 AG-QEAKHKMAPLAAAAAWGLGQWDTMAEYV--SVMSEDSQD-----KAFFRAILALHRDEFEKAVKLIERARDLLDTEL 1419 (2341)
T ss_pred cc-hhHHHHHHHHHHHhhhccccchhhhhhc--ccccccchh-----hHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHH
Confidence 32 2445678999999999999999876543 333333333 445567789999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhhhhh
Q 000578 579 ACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNL 658 (1412)
Q Consensus 579 s~~s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~ 658 (1412)
+.+..|||+++|..+++.||+.|+|++++ ++..+ ++...+...|.+++.+++...+.
T Consensus 1420 ~~~~~Es~sr~y~~~~~~~~~~e~E~~~~--~k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~~ 1476 (2341)
T KOG0891|consen 1420 TAMAGESYNRAYGVMVRAQMLAELEEIIE--YKKLP---------------------ERRPIIAKTWWKRLQGCQKNVDD 1476 (2341)
T ss_pred HHHHhhHHhhchhhhhhhhhhhhHHHHHH--hhccc---------------------chhHHHHHHHHhhHHHhhccHHH
Confidence 99999999999999999999999999998 44321 13455778999999999999999
Q ss_pred hhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC-----CCCCCchhhhhhHHHHHHHH
Q 000578 659 LEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGP-----GDQCSTVYWLGRLEEAKLLR 733 (1412)
Q Consensus 659 ~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~-----~~q~~~~~~~a~iE~AklLW 733 (1412)
|+.++.+|..++.+ .+...+|++++.+||++|+..++.+.+..+..-.+.. .-...|.+. +...+++|
T Consensus 1477 wq~~lr~~~~v~~p----~~~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v---~a~~~~~~ 1549 (2341)
T KOG0891|consen 1477 WQRILRVRSLVLSP----QEDMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVV---YAYLKYLW 1549 (2341)
T ss_pred HHHHHHHhhhccCC----CcchHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHH---HHHHhHHH
Confidence 99999999888776 6678999999999999999999999987765433211 112233343 55699999
Q ss_pred HCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHhhhhcCChHHHHHhhhhhhcccccccccchhhHHHHhhhhhhhH
Q 000578 734 AQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHL 813 (1412)
Q Consensus 734 aqGe~~~AI~~Lq~l~~~~~~~~~~a~ll~llg~Wlaetr~e~p~~I~~~Yl~~a~~l~~~~~~~~~~~~~~~~~~~~~l 813 (1412)
+.+....||+.++...... .++.++.. +... .+... .+ +..
T Consensus 1550 ~~~~~~~~~~~~~~~~s~l----------------~~d~~~~~-~~~~----------~~~~~----~~-----~~~--- 1590 (2341)
T KOG0891|consen 1550 ATDSKDEAINTLQEFTSTL----------------NSDLGSDP-DELL----------SEPTE----AE-----KQE--- 1590 (2341)
T ss_pred hhccchHHHHHhHHHHHHH----------------HhhcCCCc-hhhh----------hcccc----hh-----hhH---
Confidence 9999999999986554321 11111111 0000 00000 00 000
Q ss_pred HHhHHHHHhhHHHHhchHHHHHHHHHHHhhHHHHHHHHHHHhhcccccchhhhHHHHHHHH---HhhccHHHHHH-----
Q 000578 814 AHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQK---QLAMDREEAQK----- 885 (1412)
Q Consensus 814 a~f~D~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~y~~~~~~~~~---~~~~d~~e~~~----- 885 (1412)
++-...++ +.+.++|+..... .+...-+..+...+..++..++.||+++-+-+.. ....=++..+.
T Consensus 1591 --~~~l~a~~---~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~l~~~~~~~~~~~ 1664 (2341)
T KOG0891|consen 1591 --YTKLLARC---FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQMLKQVTKAKYAPG 1664 (2341)
T ss_pred --HHHHHHHH---HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCc
Confidence 00011111 1344555543222 1222333445556777778888999886111100 00000000000
Q ss_pred --------------hHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHhhccCcchHHHHHHHHHhHH----------
Q 000578 886 --------------LLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTID---------- 941 (1412)
Q Consensus 886 --------------l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~~R~~sLW~~~~~~~~~~~~~~~~~~---------- 941 (1412)
=..--..|..++++.|++++..+.....+++.|+++|||.+|.+++|..++..++.
T Consensus 1665 ~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ 1744 (2341)
T KOG0891|consen 1665 ANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEV 1744 (2341)
T ss_pred cccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHh
Confidence 00112358999999999999998888788999999999999999887777665443
Q ss_pred --HHHhhhccCcccc----------ccccccc----------cccchhHHHHHHHHHHHHhhhhHHHHHHHH--------
Q 000578 942 --ELLALANGDRIKD----------KQRSRNS----------FVVDMDKKLAAENLLEELSSYHGAIIRQMK-------- 991 (1412)
Q Consensus 942 --~l~al~~~~~~~~----------~~~~~~~----------~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~-------- 991 (1412)
+|+|+++...... .++.+.+ .-....|..+|..|++++..+.+.++++..
T Consensus 1745 ipqLiari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lvs~elir 1824 (2341)
T KOG0891|consen 1745 IPQLIARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLVSEELIR 1824 (2341)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhhHHHHHH
Confidence 3666555432110 0110000 001235778888999998877665554422
Q ss_pred ---------------------------HHHHHHHHHHhhhccc-----c----------------------------ccc
Q 000578 992 ---------------------------QMVDVYIKLAELETRR-----E----------------------------DTN 1011 (1412)
Q Consensus 992 ---------------------------~~~~~~~~la~~~~~~-----~----------------------------~~~ 1011 (1412)
.|++...++.++.... + +.+
T Consensus 1825 ~a~lwhe~w~e~ldeAsr~yf~~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~ 1904 (2341)
T KOG0891|consen 1825 VAILWHEQWHEGLEEASRLYFSDHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLN 1904 (2341)
T ss_pred HHhhhHhhhhhccHHHHHHHhhHhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHH
Confidence 2333333332221100 0 001
Q ss_pred ccc--------cchhhhhhhhcccccccc-----cccccCCCCccccCC-CCccccccCCeEEEecCCCcceEEEEEeCC
Q 000578 1012 KRI--------QLPREIRCLRQLELVPVV-----TATVPIDCTCQYNEG-SFPYFKGLAESVMVMNGINAPKVVECFGSD 1077 (1412)
Q Consensus 1012 ~~~--------~l~~~~~~l~~l~~~p~~-----t~~lp~~~~~~y~~~-~~~~i~~~~~~v~v~~s~~~Pk~i~~~gsd 1077 (1412)
+.+ .+.+.++.++.++.+.+. ...+++...++|.++ .+..|.+|.+++.|++++++|+++.|.|||
T Consensus 1905 qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRprkl~i~gs~ 1984 (2341)
T KOG0891|consen 1905 QAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRPRKLVIRGSD 1984 (2341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhhHHHhhcccc
Confidence 111 122233344444433332 234555555778654 224788999999999999999999999999
Q ss_pred CceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCC
Q 000578 1078 GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNG 1157 (1412)
Q Consensus 1078 G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~ 1157 (1412)
|+.|.|++| |++|+|||+|+||+|++||.++..+.+|.||+|.|.+|.|+|++++.|+|+||+++.+++.++.......
T Consensus 1985 g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k 2063 (2341)
T KOG0891|consen 1985 GKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK 2063 (2341)
T ss_pred hhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh
Confidence 999999999 7899999999999999999999999999999999999999999999999999999999998775432111
Q ss_pred CCCCCCCCCcchhHHHHhh--hcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhc
Q 000578 1158 GAHGRYGIGDWSFLKCREH--MSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1234 (1412)
Q Consensus 1158 ~~~~r~~~~~~~~~~~r~~--~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilG 1234 (1412)
........+...+..-. -....+|...|+.-...... .+++-++-+.+.++.|+.+|.+||+|.|++||+|||+|
T Consensus 2064 --~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilG 2141 (2341)
T KOG0891|consen 2064 --KIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILG 2141 (2341)
T ss_pred --ccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 00111111111110000 00123466777765555554 67777888999999999999999999999999999999
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhhccccC-CCCCCCCccccccccccccccccccchhHHHHHHHHHHHhcChHHHH
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALL 1313 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~~~~l~ 1313 (1412)
+|||||+|.|+|+.||.++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+..|+.+++++|.+++.++
T Consensus 2142 lGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~ 2221 (2341)
T KOG0891|consen 2142 LGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLM 2221 (2341)
T ss_pred ccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999999999976 56999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcccccChhHHHhhhhccc-------------------ccccCCCCCCccccccchhHHHHHHHHHhhcc
Q 000578 1314 TIVEVFIHDPLYKWALSPLKALQRQKEMD-------------------DDLETGLEGPEDEYEGNKDAERALIRVKQKLD 1374 (1412)
Q Consensus 1314 ~iL~~f~~DpL~~W~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~ 1374 (1412)
.++++|+|||+++|...+....++..... .+.....+.....+..|..+.-++.|+..|+.
T Consensus 2222 a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl~~~~~klt 2301 (2341)
T KOG0891|consen 2222 AVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPEALNARAIQVLKRISDKLT 2301 (2341)
T ss_pred HHHHhhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhccccccccccccccccChhhHHHHHhcccccc
Confidence 99999999999999886433222211000 00000011111111225556678999999999
Q ss_pred CCCC--CCccCHHHHHHHHHHHccChhhhhhhccccccCC
Q 000578 1375 GYEG--GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1375 g~~~--~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
|.+. .+.++|..||.+||+|||+|+|||+.|+||||+|
T Consensus 2302 g~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2302 GRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred eeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 9543 4679999999999999999999999999999964
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-71 Score=760.58 Aligned_cols=1034 Identities=21% Similarity=0.259 Sum_probs=624.4
Q ss_pred cHHhhHHHHHHHhhccCCchhhhhhHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhhHHH
Q 000578 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1412)
Q Consensus 183 s~~~Wi~~l~~~Ll~~~~d~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~s~~~~~~i 262 (1412)
.|.+|+..+.++++.+.+...++.|.-++...-..+..++..+...+|.+.-. ...+.+-..+.. ....+..++..+
T Consensus 921 ~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~~-~~~~~~~~~~~~ 997 (2105)
T COG5032 921 FWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLKS-KLHLPTIPILIL 997 (2105)
T ss_pred HHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHHH-HhhcCCCCchhh
Confidence 49999999999998888889999999999988999999999999999977521 011111111111 222233344444
Q ss_pred HHHHHHHHHHhHhhHhhcccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000578 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1412)
Q Consensus 263 q~~l~~l~~LR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~t~~d~~~wL~Id~l~lA~AA 342 (1412)
+..+...+. +|++. ...+++.++...+...+
T Consensus 998 ~~~~~~~n~------~e~~~-------------------------------------------~~~~~~~~~~~~~~~~~ 1028 (2105)
T COG5032 998 QMLLDSKNL------TEFTE-------------------------------------------HQLKNLPLPSLSIGFYE 1028 (2105)
T ss_pred hhhhhhcch------hhhhh-------------------------------------------hhhheecchhhhhhHHH
Confidence 444322111 22221 22346777777777999
Q ss_pred HHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccccc----chhhHHHHHHhh
Q 000578 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLSSQIVTLEHE 418 (1412)
Q Consensus 343 ~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~----~l~~~i~~yE~e 418 (1412)
-.|+.++++++|.|.+.-+. . ....++.++++..++.+.|..-|+.... .....-.++++.
T Consensus 1029 ~~~~~~~~~~~~~~~~~~~~---------~------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 1093 (2105)
T COG5032 1029 SLCSFLAKLLHDEELYFFPL---------L------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYL 1093 (2105)
T ss_pred HHHHHHHHHhHHHHHHhccc---------c------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHH
Confidence 99999999999999954321 0 1356788999999999999999954322 223335799999
Q ss_pred CCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhhhccccc
Q 000578 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1412)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~gl~~~ 498 (1412)
++|.+++..|-.....+.. ......|.+++....|.+.......+--+-
T Consensus 1094 ~~~~~~l~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~- 1142 (2105)
T COG5032 1094 QRWYEALNRYFELLSKGDR------------------------------LFAISFTKLRNVDALGKLELYSSLAEIDMF- 1142 (2105)
T ss_pred HHHHHHHHHHHHHHhhccc------------------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHhhh-
Confidence 9999999999887774200 111346788888888877765443332111
Q ss_pred cCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHH-HHHHHHHHHH
Q 000578 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL-KHSKQELVLS 577 (1412)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~~f~~~i-~~aR~~l~~~ 577 (1412)
.+.+..+.-...+...++|..|.|+....+- +.+........++. + ......+.++.+++.... -.++..++.+
T Consensus 1143 ~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~--e~~~~k~~~~~~~~-s--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1217 (2105)
T COG5032 1143 LSLHRRRKLLETLVATAYEQVGEWYKAQQLY--EVAQRKARSKEFPF-S--LQYLYWHINDIDCADKLQSVLAELSLVTG 1217 (2105)
T ss_pred hccCcchhhhhHHHHHHHHHHHhHHHHHHHH--HHHhhhcccccCch-h--hHHHHHcccchhhHhhhhhhhhhcccccc
Confidence 1112223334566778999999999754331 11111222323332 2 246677889999999888 5677788888
Q ss_pred hhhh-hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHh---hh
Q 000578 578 VACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKR---TQ 653 (1412)
Q Consensus 578 Ls~~-s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~---~~ 653 (1412)
+... ..+++.+++-...+.+...++++++...++...+ .+ .-.-.......|..++.+ ++
T Consensus 1218 ~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~---------~~~~~~~~~~~~~~~l~~~~~~~ 1281 (2105)
T COG5032 1218 ISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------FG---------ALMLLSLSAELWDKILEGRSSCS 1281 (2105)
T ss_pred hhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------hH---------HHHHHHHHHhccchhhcchhhhh
Confidence 8877 6789999999999999999999998854443311 00 000123345578888887 66
Q ss_pred hhhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhcC-CC---CC-C-CCchhhhhhH
Q 000578 654 LHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-GP---GD-Q-CSTVYWLGRL 726 (1412)
Q Consensus 654 ~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag-~~~~A~~aL~~l~~l~~-~~---~~-q-~~~~~~~a~i 726 (1412)
..+..+-.....+..+.. . ....++|++++..|++.+ +.......+..+..-.. .. .. + ..|+.+ .+
T Consensus 1282 ~~i~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 1355 (2105)
T COG5032 1282 KSIKLSLNIWLDLSIVVS---P-KDEPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPW--AL 1355 (2105)
T ss_pred HHHHHHHHHHHHHhhhcC---H-hhhhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCc--hh
Confidence 666655544444432222 2 223389999999999999 55666666655432111 00 00 0 000011 12
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHhhhhcC-ChHHHHHhhhhhhcccccccccchhhHHHH
Q 000578 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSS-NSRIILENYLKPAVSFSEDQRTTDKKSIER 805 (1412)
Q Consensus 727 E~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ll~llg~Wlaetr~e-~p~~I~~~Yl~~a~~l~~~~~~~~~~~~~~ 805 (1412)
..-...|+......+....+.. ..+.+.+......- ....+...|.+.+.
T Consensus 1356 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 1406 (2105)
T COG5032 1356 LDLKRLLATWRQNAFLRINPEL-------------LPLLSSLLNLQSSSLSKQLVSRGSSESAI---------------- 1406 (2105)
T ss_pred hhhhhhhhHHHHhhhhhhchhh-------------ccccchhhhccchhccccccccchhhhhH----------------
Confidence 2333444443333222222111 11111111111000 00000000000000
Q ss_pred hhhhhhhHHHhHHHHHhhHHHHhchHHHHHHHHHHHhhHHHHHHHHHHHhhcccccchhhhHHHHH-----HHHHhhccH
Q 000578 806 QCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQE-----LQKQLAMDR 880 (1412)
Q Consensus 806 ~~~~~~~la~f~D~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~d~ 880 (1412)
.-..+.++++. .. .+.+.|.+..++......+.. ++..+......++.+|++.... .+--.....
T Consensus 1407 ~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (2105)
T COG5032 1407 SINSFASVARK------HF---LPDNQLKKIYQLSNILISEAF-LLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQE 1476 (2105)
T ss_pred HHHHHHHHHHH------hc---CcHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHH
Confidence 00011111100 00 011222222221111111111 1111111111222333332210 000000000
Q ss_pred HHHH-HhHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHhhccCcchHHHHHHHHHhHH----------------H-
Q 000578 881 EEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTID----------------E- 942 (1412)
Q Consensus 881 ~e~~-~l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~~R~~sLW~~~~~~~~~~~~~~~~~~----------------~- 942 (1412)
.+.. ........+..+.++..+.+...+..-+..+.+|.+.+|+..+....+..++..+.. +
T Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1556 (2105)
T COG5032 1477 SEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQL 1556 (2105)
T ss_pred HHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhh
Confidence 1111 111223345566777777777777777777888999999887764322222111100 0
Q ss_pred --------------HH-------------------------------hhhccCcccc----ccc-------ccc-----c
Q 000578 943 --------------LL-------------------------------ALANGDRIKD----KQR-------SRN-----S 961 (1412)
Q Consensus 943 --------------l~-------------------------------al~~~~~~~~----~~~-------~~~-----~ 961 (1412)
++ .+.+..+... ... ... .
T Consensus 1557 ~~~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~ 1636 (2105)
T COG5032 1557 LSSLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIAYPLLH 1636 (2105)
T ss_pred hhhcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhh
Confidence 00 0000000000 000 000 0
Q ss_pred c-----ccch-hHH----------HHHHHHHHHHhhhhH-------HHHHHHHHHHHHH---H-HHHhhhcccccccccc
Q 000578 962 F-----VVDM-DKK----------LAAENLLEELSSYHG-------AIIRQMKQMVDVY---I-KLAELETRREDTNKRI 1014 (1412)
Q Consensus 962 ~-----~~~~-~~~----------~aa~~i~~~~~~~~~-------~~~~~~~~~~~~~---~-~la~~~~~~~~~~~~~ 1014 (1412)
. +-+. .|. ......+.......+ ..-.....+.+.+ + .+...+...-....+.
T Consensus 1637 ~~~~~~l~q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 1716 (2105)
T COG5032 1637 LLFEPILAQLLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKIDISLLNLSRKL 1716 (2105)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhHHH
Confidence 0 0000 000 000111111110000 0000112233333 1 1111100000000000
Q ss_pred ------cchhhhhhhhcc---------cccc-cccccccCCCCccccCC-CCccccccCCeEEEecC-CCcceEEEEEeC
Q 000578 1015 ------QLPREIRCLRQL---------ELVP-VVTATVPIDCTCQYNEG-SFPYFKGLAESVMVMNG-INAPKVVECFGS 1076 (1412)
Q Consensus 1015 ------~l~~~~~~l~~l---------~~~p-~~t~~lp~~~~~~y~~~-~~~~i~~~~~~v~v~~s-~~~Pk~i~~~gs 1076 (1412)
.+++.+..+... ...| .....+| ++|... ++|.|.+|.|++.++.| .++|++++++|+
T Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P----~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~rgs 1792 (2105)
T COG5032 1717 YISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLP----GQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTIRGS 1792 (2105)
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCC----cccccCCCCceEEEecCceeeeecccccceEEEEEec
Confidence 011111111000 0011 1122333 456443 67899999999999987 999999999999
Q ss_pred CCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccC
Q 000578 1077 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1156 (1412)
Q Consensus 1077 dG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~ 1156 (1412)
||+.|++++|+ +||+|||+++||++++||.+|+++++|+||++.|++|+|||+||++|+||||||++||+.|+...
T Consensus 1793 dG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~--- 1868 (2105)
T COG5032 1793 DGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREY--- 1868 (2105)
T ss_pred CCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHH---
Confidence 99999999995 69999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCcchhHH--HHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhc
Q 000578 1157 GGAHGRYGIGDWSFLK--CREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1234 (1412)
Q Consensus 1157 ~~~~~r~~~~~~~~~~--~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilG 1234 (1412)
|+++++......+ ++-.......|.+.|...+.+++|++++||++.|++|.+|+.+|+|||+|+|+|||+|||||
T Consensus 1869 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLg 1945 (2105)
T COG5032 1869 ---HKRKNISIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILG 1945 (2105)
T ss_pred ---hhhcCCChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333332111111 11111122346777888888888999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhhc-cccCCCCCCCCccccccccccccccccccchhHHHHHHHHHHHhcChHHHH
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALL 1313 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f~-~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~~~~l~ 1313 (1412)
+|||||+|||||+.||+++|||||.||+ +|..+++||.|||||||||+++||++|+||.||.+|+.++++||++.+.|+
T Consensus 1946 lgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~LRk~~~~L~ 2025 (2105)
T COG5032 1946 LGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALRKNADSLM 2025 (2105)
T ss_pred CCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999977765 566799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccCCCC--CCccCHHHHHHHH
Q 000578 1314 TIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG--GEMRSVHGQVQQL 1391 (1412)
Q Consensus 1314 ~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~~--~~~lsv~~qV~~L 1391 (1412)
++|++|++|||++|...|- .....+.++..+.+|+..|+.|.+. ...++|+++|+.|
T Consensus 2026 ~~le~f~~d~l~~W~~~p~---------------------~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~l 2084 (2105)
T COG5032 2026 NVLELFVRDPLIEWRRLPC---------------------FREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESL 2084 (2105)
T ss_pred HHHHHHhcCcchhhhcCcc---------------------ccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHH
Confidence 9999999999999973220 0012345566678899999988543 2569999999999
Q ss_pred HHHccChhhhhhhccccccCC
Q 000578 1392 IQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1392 I~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
|++||||.|||+||+||+|||
T Consensus 2085 i~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2085 ITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred HHHHcCHHHHHhhccccccCC
Confidence 999999999999999999997
No 5
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=9.8e-69 Score=612.30 Aligned_cols=274 Identities=65% Similarity=1.165 Sum_probs=258.6
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|.|.|.|++|+++||+|+++|+||+.|.||+|. +||||||+|+||||++||++|++++||++|+|.|+||.|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 568999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhc-----chHhHHHHHHHHHhhhhhhHHHHHHHHc
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1206 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~-----~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1206 (1412)
+++||||||+|++||++|+.... |.|.++.|.++...+|++.+. ...+++++|++++++++|++++||+++|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999997543 567888888777666766552 2356889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccc
Q 000578 1207 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1286 (1412)
Q Consensus 1207 ~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG 1286 (1412)
++|.+||.+|++||+|+|++||+|||||||||||+||||+..||+|+|||||++|++|+.+++||+|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000578 1287 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1329 (1412)
Q Consensus 1287 ~~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~ 1329 (1412)
++|++|.|+.+|++++++||++++.|+++|++|+|||+++|+.
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~~ 279 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWTV 279 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCccccccC
Confidence 9999999999999999999999999999999999999999973
No 6
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=4e-67 Score=605.64 Aligned_cols=276 Identities=37% Similarity=0.639 Sum_probs=244.9
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|.++|.|++|+++||+|+++|+||+.|+||+|+ +||||||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~-~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKG-REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCC----------CC--CC----CCCCcchhHHHHhhhc-------------chHh
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGG----------AH--GR----YGIGDWSFLKCREHMS-------------NVKD 1182 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~----------~~--~r----~~~~~~~~~~~r~~~~-------------~~~~ 1182 (1412)
+++||||||+|+.||.+++....+..+ .+ .. ..+.+..+.+....+. ....
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 999999999999999999865322111 00 00 0111212222222111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1183 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1183 k~~~f~~i~~~~~p-vl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
+.++|.+++++++| .+.++++..+++|++||.+|++||+|+|++||+|||||||||||+|||||+.||+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1262 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1262 ~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|+
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999899999999999999999999999999999999999999999999999999999999999996
No 7
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=2.3e-66 Score=583.29 Aligned_cols=247 Identities=23% Similarity=0.370 Sum_probs=236.6
Q ss_pred ccccCCeEEEe-cCCCcceEEEEEeCCCceEeeeeec-CccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEE
Q 000578 1052 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1129 (1412)
Q Consensus 1052 i~~~~~~v~v~-~s~~~Pk~i~~~gsdG~~y~~L~K~-G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViP 1129 (1412)
|.+|.|+++|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.++||.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999976 7889999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh--hHHHHHHHHcC
Q 000578 1130 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1207 (1412)
Q Consensus 1130 Ls~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~p--vl~~~f~~~f~ 1207 (1412)
|++++|||||++++.||.+++.. |+++|+++++++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999998631 78899999999766 99999999999
Q ss_pred CchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccC-CCCCCCCccccccccccccc
Q 000578 1208 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMG 1286 (1412)
Q Consensus 1208 ~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG 1286 (1412)
+|++||.+|++||+|+|++||+|||+|||||||+|||||..||+|+|||||++|++|+. +++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999976 48999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1287 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1287 ~~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
++|+||+|+.+|++|+++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999996
No 8
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=2.5e-66 Score=594.95 Aligned_cols=276 Identities=37% Similarity=0.684 Sum_probs=244.9
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|.|+|.|++|+++||+|+++|+||+.|+||+|. +||||||+|+||+|++||.+|+++++|++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHH--hhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCC
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCR--EHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1208 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r--~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~ 1208 (1412)
+++||||||+|++||.+++.......+.+.......+....+. ..+ ....|.++|++++++.+| ++++||+..+++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 9999999999999999999764433221110000000000000 111 223678999999998776 899999999999
Q ss_pred chHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccC-CCCCCCCcccccccccccccc
Q 000578 1209 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1287 (1412)
Q Consensus 1209 p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~ 1287 (1412)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999976 689999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000578 1288 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1329 (1412)
Q Consensus 1288 ~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~ 1329 (1412)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.+
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999963
No 9
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=3.4e-64 Score=559.79 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.4
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|.+++.|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1211 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1211 (1412)
+++||||||+++.||++++.. +.+++||++.+++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998741 4677899999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccC-CCCCCCCccccccccccccccccc
Q 000578 1212 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1290 (1412)
Q Consensus 1212 w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~ 1290 (1412)
|+.+|++|++|+|++|++|||||||||||+|||||+.||+++|||||++|++|+. +++||+|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1291 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1291 eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
+|.|+.+|+.++++||++++.|+++|++|+|||+++|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999996
No 10
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=7e-63 Score=550.46 Aligned_cols=236 Identities=48% Similarity=0.912 Sum_probs=227.8
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|++++.|++|+++||+|+++|+||+.|.||+|. +||||||+|+||+|+++|.+|.++++|++++|.++||.|||++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1211 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1211 (1412)
+++||||||+|++||++++... .+|++++||.++|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~----------------------------------------~~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEI----------------------------------------YPPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHh----------------------------------------CCHHHHHHHHHHCcCHHH
Confidence 9999999999999999987531 046889999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccccccccc
Q 000578 1212 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1291 (1412)
Q Consensus 1212 w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1291 (1412)
|+.+|.+|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1292 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1292 G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 11
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=2.2e-59 Score=517.92 Aligned_cols=222 Identities=49% Similarity=0.878 Sum_probs=215.2
Q ss_pred ccccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000578 1052 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1131 (1412)
Q Consensus 1052 i~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs 1131 (1412)
|.+|.++|.|++|+++||+|+++|+||+.|.||+|. +||||||+|+||+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000578 1132 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1211 (1412)
Q Consensus 1132 ~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1211 (1412)
+++||||||+|+.||+. ++++||+.++++|++
T Consensus 80 ~~~GliE~v~~~~sl~~------------------------------------------------~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLKP------------------------------------------------VLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHHH------------------------------------------------HHHHHHHHHCcCHHH
Confidence 99999999999999873 456688899999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccccccccc
Q 000578 1212 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1291 (1412)
Q Consensus 1212 w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1291 (1412)
||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000578 1292 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1322 (1412)
Q Consensus 1292 G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~D 1322 (1412)
|.|+.+|+.++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 12
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.1e-54 Score=478.97 Aligned_cols=218 Identities=36% Similarity=0.618 Sum_probs=209.6
Q ss_pred cccCCeEEEecCCCcceEEEEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCC
Q 000578 1053 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 1132 (1412)
Q Consensus 1053 ~~~~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~ 1132 (1412)
.+|.++++|++|+++||+|+++|+||+.|+||+|. +||||||+|++|+|+++|.+|++++ ++++.+++|.|||+++
T Consensus 2 ~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 2 AIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 56889999999999999999999999999999996 5999999999999999999999875 6899999999999999
Q ss_pred CCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHH
Q 000578 1133 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW 1212 (1412)
Q Consensus 1133 ~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w 1212 (1412)
++||||||+|+.|++ +.+++||...+++|++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 35677899999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccccccc
Q 000578 1213 FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG 1292 (1412)
Q Consensus 1213 ~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG 1292 (1412)
+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++++.+..||+|||||||||+++||+.|++|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000578 1293 VFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1322 (1412)
Q Consensus 1293 ~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~D 1322 (1412)
.|+.+|+.++.+||++++.|+++|++|++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 13
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=2.6e-53 Score=495.32 Aligned_cols=250 Identities=25% Similarity=0.380 Sum_probs=221.2
Q ss_pred ccccccCCCCccccCCCCccccccC-CeEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhhHHHHHHHHHHHHHH
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1108 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~~~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~l 1108 (1412)
.++.+|++|+. .+.+|. ++++|++|+++|++|++.++| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 46778888753 345554 679999999999999999999 99999999965 9999999999999999999
Q ss_pred HhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHH
Q 000578 1109 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1188 (1412)
Q Consensus 1109 L~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~ 1188 (1412)
|+++. .+|.++||.|+|+++++||||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99764 68999999999999999999999999999998753211100 111
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccC-C
Q 000578 1189 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1267 (1412)
Q Consensus 1189 ~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l 1267 (1412)
.+.+++||...+++|..|..+|.+|++|+|+|||+||||||||||++||||| .+|++||||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccC
Confidence 1356789999999999999999999999999999999999999999999999 5999999999999997643 4
Q ss_pred C-CCCCCcccccccccccccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1268 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1268 ~-~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 4 69999999999999999999976 9999999999999999999999999999999998875
No 14
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=4.4e-53 Score=492.32 Aligned_cols=288 Identities=23% Similarity=0.436 Sum_probs=248.3
Q ss_pred ccccccCCCCccccCCCCcccccc-CCeEEEecCCCcceEEEEEeCCC---ceEeeeeecCccchhhHHHHHHHHHHHHH
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNT 1107 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~i~~~gsdG---~~y~~L~K~G~dDLRqD~r~~Qlf~liN~ 1107 (1412)
+++.+|+||+. .|.++ .+++.|++|+++|++|+|.++|| +.|.+|+|.| ||||||+++||+|++||.
T Consensus 51 ~~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~ 121 (350)
T cd00896 51 EPIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDR 121 (350)
T ss_pred CCCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHH
Confidence 46678888853 34444 46899999999999999999999 9999999965 999999999999999999
Q ss_pred HHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHH
Q 000578 1108 FLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAF 1187 (1412)
Q Consensus 1108 lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f 1187 (1412)
+|+++. ++|.++||.|+|+++++||||||+ +.|+++++...
T Consensus 122 il~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~---------------------------------- 162 (350)
T cd00896 122 LLKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKY---------------------------------- 162 (350)
T ss_pred HHHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHH----------------------------------
Confidence 999874 799999999999999999999999 99999986420
Q ss_pred HHHHhhhhhhHHHHHHHHcCCchHH----HHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhcc
Q 000578 1188 QEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1263 (1412)
Q Consensus 1188 ~~i~~~~~pvl~~~f~~~f~~p~~w----~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~ 1263 (1412)
+.+.+||...++++..| ..+|.+|++|+|+|||+||||||||||++||||+ .||++||||||++|++
T Consensus 163 --------~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~ 233 (350)
T cd00896 163 --------GGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGR 233 (350)
T ss_pred --------HHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCC
Confidence 01467788888888774 6899999999999999999999999999999999 5999999999999998
Q ss_pred ccCCCCCCCCccccccccccccccccccc--hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcc
Q 000578 1264 GLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEM 1341 (1412)
Q Consensus 1264 g~~l~~pE~VPFRLTrniv~~mG~~g~eG--~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~ 1341 (1412)
+ |.|++||||||++|+++||+.|.+| .|+..|+.++.+||++.+.|++++++|+++++.+|...+
T Consensus 234 ~---p~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~---------- 300 (350)
T cd00896 234 D---PKPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDP---------- 300 (350)
T ss_pred C---CCCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCH----------
Confidence 8 4588899999999999999999999 999999999999999999999999999999988775322
Q ss_pred cccccCCCCCCccccccchhHHHHHHHHHhhccCCCCCCccCHHHHHHHHHHHccCh--hhhhhhccccccCC
Q 000578 1342 DDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP--ERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1342 ~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~--~NLa~m~~gW~Pwl 1412 (1412)
..++..+++|+.-..+ .-.....+..||++|.+. .++.-+++.|+.||
T Consensus 301 ---------------------~~~i~~l~~rf~l~~s--~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 301 ---------------------DKAILKVQEKFRLDLS--DEEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred ---------------------HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 2357788888864222 123566799999999986 47777888887765
No 15
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.3e-49 Score=522.89 Aligned_cols=974 Identities=18% Similarity=0.232 Sum_probs=606.1
Q ss_pred cccCHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccccc--ch
Q 000578 331 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH--KL 408 (1412)
Q Consensus 331 L~Id~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~--~l 408 (1412)
.+++..++.=-.-.=+++.+++.++|.+...... +. ........+.|-+||.+|+|-|.+||+-... ..
T Consensus 2414 ~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~ 2484 (3550)
T KOG0889|consen 2414 IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFP 2484 (3550)
T ss_pred CCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccH
Confidence 5677778877788888999999999997655411 10 1122446789999999999999999998633 34
Q ss_pred h-hHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhH
Q 000578 409 S-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 487 (1412)
Q Consensus 409 ~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~ 487 (1412)
+ .+..-||--|.|++|+..||........ + ..| ++++| +.-|+. --|+|.+.|.+|++
T Consensus 2485 eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~-----~~~-----~~~~E--y~lWed--~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2485 ETMVALSYEQLGFWEEAQSLYEKAQVKARE-------G-----AIP-----YSESE--YKLWED--HWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------c-----cCC-----CCcHH--HHHHHH--HHHHHHHHHHHHHH
Confidence 4 4557999999999999999998775321 1 112 22323 233432 37999999999999
Q ss_pred HHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChH---HHH
Q 000578 488 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSE---EFY 564 (1412)
Q Consensus 488 L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~---~f~ 564 (1412)
+-.+++...+ .++-.|+|||+..|..+....... .....+...|...+|++..++++.+.. .+.
T Consensus 2544 l~e~~k~~~~-----------~~llle~aWrlsdw~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 2610 (3550)
T KOG0889|consen 2544 LTEFGKHEGN-----------YELLLECAWRLSDWNDQKDALEQK--AKSLSDVPGFRKELYDAFLALQKKNSNGVGEFE 2610 (3550)
T ss_pred HHHHHhccCC-----------ceeeeehhccCCcchhHHHHHHHh--hhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9888754222 244568999999999765432111 122345567788899999999764443 455
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHHH
Q 000578 565 RKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 644 (1412)
Q Consensus 565 ~~i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (1412)
.+|..+-+.-+.+..+.-.=++..-++.+..+|.+-|+.+...+.-.. .++- .+. ....-.....+.++
T Consensus 2611 ~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l-~~~n---~~n-------~~~~~~d~Ksil~~ 2679 (3550)
T KOG0889|consen 2611 RLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDL-NDGN---VQN-------LDNKAQDIKSILQT 2679 (3550)
T ss_pred HHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhc-cccc---ccc-------cchhHHHHHHHHHH
Confidence 666655555444544333333333355556678888888777643211 1110 000 00011235667899
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhhc----C-----------------chHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000578 645 WSSILKRTQLHMNLLEPFMAFRRVLLQILS----C-----------------KDFTMQHLLESASTLRKGFRLSQAAAAL 703 (1412)
Q Consensus 645 W~~rl~~~~~~~~~~EpiL~~R~~vl~il~----~-----------------~~~~~~~wl~~A~laRkag~~~~A~~aL 703 (1412)
|+.|+....-++++|+-+..=|+-+.++.. . -.+.....+.+|+.|||.|-...+.+.|
T Consensus 2680 Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L 2759 (3550)
T KOG0889|consen 2680 WRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQL 2759 (3550)
T ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999998999999999999987766531 1 0224445688999999999888888877
Q ss_pred HHHHhhcCCCCCCCCchhhhhhH-HHHHHHHHC-CChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHhhhhcCChHHHH
Q 000578 704 HELKFLYTGPGDQCSTVYWLGRL-EEAKLLRAQ-GQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIIL 781 (1412)
Q Consensus 704 ~~l~~l~~~~~~q~~~~~~~a~i-E~AklLWaq-Ge~~~AI~~Lq~l~~~~~~~~~~a~ll~llg~Wlaetr~e~p~~I~ 781 (1412)
..+=.+. +-.-.++..++ |.|+=.-.. +|...+++..+..-.......++++.+.+=|..+++-+...+.+.
T Consensus 2760 ~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~- 2833 (3550)
T KOG0889|consen 2760 AKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANK- 2833 (3550)
T ss_pred HHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHH-
Confidence 6653221 11111332232 344433222 455555555433222223345678888888888887665555432
Q ss_pred HhhhhhhcccccccccchhhHHHHhhhhhhhHHHhHHHHHhhHHH--Hhc----hHHHHHHHHHHHhhHHHH-HH---HH
Q 000578 782 ENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEE--RLA----SNEWQAAMRLRKHKTIEL-EA---LI 851 (1412)
Q Consensus 782 ~~Yl~~a~~l~~~~~~~~~~~~~~~~~~~~~la~f~D~~~~~~~~--~~~----~~e~~~~~~~~~~~~~e~-~~---l~ 851 (1412)
.+..|+++. ...+++....|.|+|.+++.-.. ... +=.||++-.....|.+.. .. |+
T Consensus 2834 --~fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2834 --AFSAAVQID-----------DGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLL 2900 (3550)
T ss_pred --HHHHHHHHH-----------hhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 233365443 22467788888899888874210 000 112343321112222211 11 11
Q ss_pred HHHhhcc-----------cccchhhhHHHHHHHHHh-hccHHHHHHhH----------------hhHHHHHHHHHHHHHH
Q 000578 852 KRLKSST-----------KGEKTDYSIKIQELQKQL-AMDREEAQKLL----------------DDRDNFLGLALEGYKR 903 (1412)
Q Consensus 852 ~~~~~~~-----------~~~~~~y~~~~~~~~~~~-~~d~~e~~~l~----------------~~~~~fl~~al~~y~~ 903 (1412)
.. .++. .+-+-||.. --.++-+ .++..|...+. ..|..+....++.--+
T Consensus 2901 s~-dda~~~l~~~~~k~l~~ip~~~wl--~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~ 2977 (3550)
T KOG0889|consen 2901 SF-DDSLGTLGDVFDKFLGEIPVWNWL--YFIPQLLTSLSKKEAKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQ 2977 (3550)
T ss_pred Hh-ccccchHHHHHHHhhccCCchhhh--hhhHHHHhhccccchhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 111122211 1111111 12222211110 1111111111221111
Q ss_pred HHhcCCCcchH----HHHHHHH---------------------hhccCcchHHHHHHHHHhHH--------H--------
Q 000578 904 CLVIGDKYDVR----VVFRLVS---------------------LWFSLSSRQNVIKNMVDTID--------E-------- 942 (1412)
Q Consensus 904 ~l~~~~~~~~~----~~~R~~s---------------------LW~~~~~~~~~~~~~~~~~~--------~-------- 942 (1412)
....|++.+.. -..+++. -|+...+-.++.+...+.+. +
T Consensus 2978 ~~~~~~~~~~~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~ 3057 (3550)
T KOG0889|consen 2978 VEVMGDKSDTTDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKST 3057 (3550)
T ss_pred HHhhcCCCCCCCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 11222221100 0111111 14443332222222111111 1
Q ss_pred --------HHhhh------ccCccccccccccccccchhHHHHHHHHHHHHhhh---------hHHHHHH---------H
Q 000578 943 --------LLALA------NGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSY---------HGAIIRQ---------M 990 (1412)
Q Consensus 943 --------l~al~------~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~---------~~~~~~~---------~ 990 (1412)
+.++. |+.+..-..... +.-..+...+...+... ...++.. .
T Consensus 3058 ~~e~~~r~v~al~~~~~~~~~~r~~ivt~~~------~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l 3131 (3550)
T KOG0889|consen 3058 PEEHALRLVNALLNIDGIQNGNRLGIVTKNT------KSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDL 3131 (3550)
T ss_pred ccHHHHHHHHHHHHHhhhccccccccccccc------cCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccH
Confidence 11111 111111000000 00001111111111110 1111111 1
Q ss_pred HHHHHHHHHH-HhhhcccccccccccchhhhhhhhcccccccccccccCCCCcccc-----CCCCccccccCCeEEEe-c
Q 000578 991 KQMVDVYIKL-AELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYN-----EGSFPYFKGLAESVMVM-N 1063 (1412)
Q Consensus 991 ~~~~~~~~~l-a~~~~~~~~~~~~~~l~~~~~~l~~l~~~p~~t~~lp~~~~~~y~-----~~~~~~i~~~~~~v~v~-~ 1063 (1412)
++.++...++ ..++.+.++.+++..++...+.++++.+. .+.+++| |+|. +..++.|.+|.|+|+++ +
T Consensus 3132 ~~~i~klk~w~~~le~k~~~~pk~~~LE~~s~~L~~F~hq-~~evEiP----Gqyl~~k~~~~~~v~I~RF~P~veiv~~ 3206 (3550)
T KOG0889|consen 3132 ENYIDKLRKWRSRLESKVDRFPKKLNLEEKSRFLSNFSHQ-FDEVEIP----GQYLLDKSNNNYFVKIERFEPRVEIVRG 3206 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHhhchHHhccccc-CCcccCC----hHHhcccchhhhhhhHHHhccchhhhcc
Confidence 1222333333 23344444556777888888899999877 8888888 6663 23578899999999988 6
Q ss_pred CCCcceEEEEEeCCCceEeeeee-cCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCC
Q 000578 1064 GINAPKVVECFGSDGHKYRQLAK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 1142 (1412)
Q Consensus 1064 s~~~Pk~i~~~gsdG~~y~~L~K-~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~ 1142 (1412)
+..+-+|++++|+||+.|.|.+. +|.-+-|.++||+|+++++|..|.+++||+||++.+.++.+||++++.+|+|..|+
T Consensus 3207 ~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps 3286 (3550)
T KOG0889|consen 3207 HGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPS 3286 (3550)
T ss_pred cceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcc
Confidence 67799999999999999975554 35688999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhhhhccCCCCCCCCCCCc---chh---HHHHhhhcc----hHhHHHHHHHHHhhhhh--hHHHHHHHHcCCch
Q 000578 1143 TVPLGDYLIGSTRNGGAHGRYGIGD---WSF---LKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPA 1210 (1412)
Q Consensus 1143 t~sL~~il~~~~~~~~~~~r~~~~~---~~~---~~~r~~~~~----~~~k~~~f~~i~~~~~p--vl~~~f~~~f~~p~ 1210 (1412)
.++|++|++......+ +.+.+ ..+ .+|+..... .+.++.+|+++...+.| ++++||.++|++|.
T Consensus 3287 ~~tl~~I~~~~c~~~~----~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~ 3362 (3550)
T KOG0889|consen 3287 SITLQEIYEEYCARNN----VSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYS 3362 (3550)
T ss_pred hhhHHHHHHHHHHhcC----CCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChh
Confidence 9999999976443222 22222 111 223222111 24578899999999999 89999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhh-ccccCCCCCCCCcccccccccccccccc
Q 000578 1211 YWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF-EQGLMLKTPERVPFRLTRDIIDGMGVTG 1289 (1412)
Q Consensus 1211 ~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f-~~g~~l~~pE~VPFRLTrniv~~mG~~g 1289 (1412)
++|.+|++|+.++|..++.+|++.+|.|.|+.+++.+.||.+..-||-+.. +..+.+...|.|||||||||+.++|-.|
T Consensus 3363 d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~ 3442 (3550)
T KOG0889|consen 3363 DFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFG 3442 (3550)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchh
Confidence 999999999999999999999999999999999999999999999999987 4445688899999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHH
Q 000578 1290 VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRV 1369 (1412)
Q Consensus 1290 ~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv 1369 (1412)
+||.+...+.++.++|-++.+.+-.+|..|+||++++|.....+.. ..++......| ..++.|
T Consensus 3443 veg~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~~~w~~~~~~~~-------------~~~~~~~~~v~----~~v~~i 3505 (3550)
T KOG0889|consen 3443 VEGLLAGSMMAIARCLIEPDFELDPYLQLFFRDEIISWFKQQTKGV-------------PADPLLEEMVN----SNVDLI 3505 (3550)
T ss_pred hhhhhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhccccCC-------------cCChhhhhhHH----HHHHHH
Confidence 9999999999999999999999999999999999999985321100 00011011112 234444
Q ss_pred HhhccCC--CCCCccCHHHHHHHHHHHccChhhhhhhccccccCC
Q 000578 1370 KQKLDGY--EGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1370 ~~kL~g~--~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
..|+... ++....+....+..||.+|+||+|||||+|.|+|||
T Consensus 3506 ~rrv~~~~~~~~ge~~~~~t~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3506 MRRVASLSSENSGELPDNQTVIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred hhhhhhhccccccCCCCCccHHHHHHHhcChhhhhcCCccccccC
Confidence 4444331 111123333479999999999999999999999997
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=2.1e-52 Score=486.55 Aligned_cols=248 Identities=20% Similarity=0.348 Sum_probs=217.1
Q ss_pred cccccCCCCccccCCCCccccccC-CeEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhhHHHHHHHHHHHHHHH
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~~~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL 1109 (1412)
.+.+|++|+.. +.++. ++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||++++|++++||.+|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAG-DDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 56788887532 33333 688999999999999999999 99999999964 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
+++. .+|.++||.|+|+++++||||||+|+.|+++|..... .... |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g----~~~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEG----LTGS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhC----cccc------------------------cc-
Confidence 9764 6899999999999999999999999999999864311 0000 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCC-
Q 000578 1190 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1268 (1412)
Q Consensus 1190 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~- 1268 (1412)
.+.+++||.+.++++..|..+|.+|++|+|+|||+||||||||||++||||| .+|++||||||++|++++...
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1257789999999999999999999999999999999999999999999999 599999999999999875432
Q ss_pred -CCCCCccccccccccccccc----cccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1269 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1269 -~pE~VPFRLTrniv~~mG~~----g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
.||+||||||++|+++||.. +..|.|+..|+.++.+||++.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 58999999999999999754 3457999999999999999999999999999999999996
No 17
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=4.1e-51 Score=472.88 Aligned_cols=265 Identities=21% Similarity=0.350 Sum_probs=223.5
Q ss_pred chhhhhhhhcccccccccccccCCCCccccCCCCccccccC-CeEEEecCCCcceEEEEEeCC--CceEeeeeecCccch
Q 000578 1016 LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDL 1092 (1412)
Q Consensus 1016 l~~~~~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~~~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDL 1092 (1412)
+...+..+..+. ....+..+|++|+. .|.+|. ++++|++|+++|++|++.++| |+.|.+|+|.| |||
T Consensus 33 l~~~l~~~~~~~-~~~~~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDL 102 (354)
T cd05177 33 LKREASRLEDFF-QDVVSCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDL 102 (354)
T ss_pred HHHHHHHhhhhc-cCCCCCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-Ccc
Confidence 444454443321 11235678888853 455665 579999999999999999999 89999999975 999
Q ss_pred hhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHH
Q 000578 1093 RQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLK 1172 (1412)
Q Consensus 1093 RqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~ 1172 (1412)
|||++++|++++||.+|+++. .+|.++||+|+|+++++|+||||+|+.|+++|.... |.. ..
T Consensus 103 RQD~l~lQli~lmd~i~~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~-----~~----- 164 (354)
T cd05177 103 RQDMLVLQIVRVMDNIWLQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLI-----GP----- 164 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhh----CCC-----cc-----
Confidence 999999999999999999864 789999999999999999999999999999987531 000 00
Q ss_pred HHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcE
Q 000578 1173 CREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEV 1252 (1412)
Q Consensus 1173 ~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~v 1252 (1412)
+. .+.+.+||...++++..|..++.+|++|+|+|||+||||||||||++||||+ .||++
T Consensus 165 --------------~~------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~ 223 (354)
T cd05177 165 --------------LK------ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHM 223 (354)
T ss_pred --------------cc------hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCE
Confidence 00 1246778888899999999999999999999999999999999999999999 59999
Q ss_pred EEEecchhhccccCCC--CCCCCccccccccccccccccccc----hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000578 1253 VHIDLGVAFEQGLMLK--TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1326 (1412)
Q Consensus 1253 vhIDfg~~f~~g~~l~--~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~ 1326 (1412)
||||||++|++++.+. .||+||||||++|+.+||..|.++ .|+..|..++.+||+|.+.|++++++|+++++.+
T Consensus 224 ~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~ 303 (354)
T cd05177 224 FHIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPE 303 (354)
T ss_pred EEEehHHhcCCCccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc
Confidence 9999999999987644 489999999999998776656553 6999999999999999999999999999999999
Q ss_pred ccc
Q 000578 1327 WAL 1329 (1412)
Q Consensus 1327 W~~ 1329 (1412)
|..
T Consensus 304 ~~~ 306 (354)
T cd05177 304 LKD 306 (354)
T ss_pred cCc
Confidence 863
No 18
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=6.7e-51 Score=473.04 Aligned_cols=251 Identities=23% Similarity=0.360 Sum_probs=217.9
Q ss_pred ccccccCCCCccccCCCCcccccc-CCeEEEecCCCcceEEEEEeCC-----CceEeeeeecCccchhhHHHHHHHHHHH
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLV 1105 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~i~~~gsd-----G~~y~~L~K~G~dDLRqD~r~~Qlf~li 1105 (1412)
..+.+|++|+. .+.++ .++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||++++|+|++|
T Consensus 52 ~~~~lPl~P~~--------~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm 122 (366)
T cd05165 52 QSFQSPLNPSL--------KLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIM 122 (366)
T ss_pred ccCCCCCCCce--------eEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHH
Confidence 34678888853 23343 3678999999999999999998 68999999965 9999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHH
Q 000578 1106 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1185 (1412)
Q Consensus 1106 N~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1185 (1412)
|.+|+++. .+|.++||+|+|+++++|+||||+|+.|+++|........ ..
T Consensus 123 ~~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--------------------------~~ 172 (366)
T cd05165 123 DSIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--------------------------TA 172 (366)
T ss_pred HHHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--------------------------cc
Confidence 99999864 6899999999999999999999999999999875311000 00
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhcccc
Q 000578 1186 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1265 (1412)
Q Consensus 1186 ~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~ 1265 (1412)
.|. .+.+.+||.+.++++..|..++.+|++|+|+|||+||||||||||++|||||. ||++||||||++|+.++
T Consensus 173 ~f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~ 245 (366)
T cd05165 173 AFK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYK 245 (366)
T ss_pred ccC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCC
Confidence 011 13567899999988899999999999999999999999999999999999995 99999999999999875
Q ss_pred C-CC-CCCCCcccccccccccccccccc------chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1266 M-LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1266 ~-l~-~pE~VPFRLTrniv~~mG~~g~e------G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
. ++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||++.+.|++++++|+..++.++.
T Consensus 246 ~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 246 SKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred ccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 3 55 59999999999999999987766 8999999999999999999999999999988887765
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=1.2e-51 Score=468.82 Aligned_cols=268 Identities=21% Similarity=0.327 Sum_probs=228.8
Q ss_pred CCcceEEEEEeCCCc--eEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCC
Q 000578 1065 INAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 1142 (1412)
Q Consensus 1065 ~~~Pk~i~~~gsdG~--~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~ 1142 (1412)
+++||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++ +++|.++||+|+|+++++||||||+|
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~n 89 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPD 89 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCC
Confidence 468888888988765 89999995 599999999999999999999975 47899999999999999999999999
Q ss_pred CCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc-hHHHHHHHHHHH
Q 000578 1143 TVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYTR 1221 (1412)
Q Consensus 1143 t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p-~~w~~~R~~ft~ 1221 (1412)
+.|+++|...... ..|.+++||.+.|++| +.|+.+|.+|++
T Consensus 90 s~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~ 131 (293)
T cd05168 90 TVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIE 131 (293)
T ss_pred chhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999998643100 1357888999999886 589999999999
Q ss_pred hhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccccccccc--chhHHHHH
Q 000578 1222 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCE 1299 (1412)
Q Consensus 1222 S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~~~ 1299 (1412)
|+|+|||+||||||||||++|||||. +|++||||||++|++++....||+|||||||+|+++||+.|.+ |.|+.+|+
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~ 210 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFL 210 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHH
Confidence 99999999999999999999999997 9999999999999999887889999999999999999999987 89999999
Q ss_pred HHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccCCCCC
Q 000578 1300 KTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGG 1379 (1412)
Q Consensus 1300 ~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~~~ 1379 (1412)
.++.+||++++.|++++++|+++|-+..... ....+..+++|+.-..+
T Consensus 211 ~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-------------------------------~~~~i~~l~~r~~l~~s- 258 (293)
T cd05168 211 KGFMALRKHVDRIILLVEIMQSDSKLPCFKA-------------------------------GEFTIQQLRDRFMLNLT- 258 (293)
T ss_pred HHHHHHHhchHHHHHHHHHHccCCCCccccC-------------------------------chHHHHHHHHHhCCCCC-
Confidence 9999999999999999999999963321100 11246677777754222
Q ss_pred CccCHHHHHHHHHHHccChhhhhhhcccccc
Q 000578 1380 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1410 (1412)
Q Consensus 1380 ~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~P 1410 (1412)
...+..++..||++|.+. .-.++|-.|+-
T Consensus 259 -e~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 259 -EEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred -HHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 344788999999999984 66677777664
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.6e-51 Score=449.14 Aligned_cols=199 Identities=39% Similarity=0.690 Sum_probs=190.4
Q ss_pred eeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCC
Q 000578 1082 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1161 (1412)
Q Consensus 1082 ~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~ 1161 (1412)
.+++|. +||||||+|++|+|+++|.+|++++|+++|+|.++||.|+|+++++||||||+|++|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCC
Q 000578 1162 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1241 (1412)
Q Consensus 1162 r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~ 1241 (1412)
+++||.++|++|..|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46789999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcEEEEecchhhccccCCCCC-CCCccccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000578 1242 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1320 (1412)
Q Consensus 1242 NILld~~tG~vvhIDfg~~f~~g~~l~~p-E~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~ 1320 (1412)
||||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++.+||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876656 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 000578 1321 HDPLYKWALS 1330 (1412)
Q Consensus 1321 ~DpL~~W~~~ 1330 (1412)
+||+.+|...
T Consensus 191 ~d~l~~~~~~ 200 (202)
T smart00146 191 YDGLPDWRSG 200 (202)
T ss_pred CCCChhhcCC
Confidence 9999999753
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=7.2e-49 Score=454.36 Aligned_cols=247 Identities=25% Similarity=0.383 Sum_probs=213.2
Q ss_pred ccccccCCCCccccCCCCcccccc-CCeEEEecCCCcceEEEEEeCCC-----ceEeeeeecCccchhhHHHHHHHHHHH
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1105 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~i~~~gsdG-----~~y~~L~K~G~dDLRqD~r~~Qlf~li 1105 (1412)
.++.+|++|+. .+.++ .++++|+.|+++|.++++.+.|| ..|.+|+|.| ||||||++++|+|++|
T Consensus 53 ~~~~lPl~P~~--------~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGL--------RAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCce--------EEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 46778988853 23333 47899999999999999999887 5799999975 9999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHH
Q 000578 1106 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1185 (1412)
Q Consensus 1106 N~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1185 (1412)
|.+|+.+ .++|.++||+|+|+++++|+||||+|+.|+++|..... |....
T Consensus 124 d~i~~~~----~ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~---~~~~~----------------------- 173 (365)
T cd00894 124 ESIWETE----SLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGA----------------------- 173 (365)
T ss_pred HHHHHHc----CCCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcc---ccccc-----------------------
Confidence 9999875 47999999999999999999999999999999874311 10000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhcccc
Q 000578 1186 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1265 (1412)
Q Consensus 1186 ~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~ 1265 (1412)
|. .+.+.+||.+.+++++.|..++.+|++|+|+||++||||||||||++||||| .+|++||||||++|++++
T Consensus 174 -~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 174 -FK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYK 245 (365)
T ss_pred -cc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCC
Confidence 00 1257789999999999999999999999999999999999999999999999 599999999999999886
Q ss_pred C-CC-CCCCCcccccccccccccccccc-----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCc
Q 000578 1266 M-LK-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLY 1325 (1412)
Q Consensus 1266 ~-l~-~pE~VPFRLTrniv~~mG~~g~e-----G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~ 1325 (1412)
. +. .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|++++++++..-+.
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip 312 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMP 312 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc
Confidence 5 33 49999999999999999987765 4799999999999999999999999999754443
No 22
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.1e-48 Score=452.34 Aligned_cols=249 Identities=22% Similarity=0.330 Sum_probs=206.7
Q ss_pred cccccCCCCccccCCCCccccccCCeEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhhHHHHHHHHHHHHHHHh
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1110 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~~~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~ 1110 (1412)
++.+|++|+... ..-+.++++|++|+++|++|+|.+.| |..|.+|+|.| ||||||++++|+|++||.+|+
T Consensus 52 ~~~lPl~p~~~~-------~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~~Qli~lmd~i~k 123 (361)
T cd05174 52 HLQSPLSPSIIL-------CEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNG-DDLRQDMLTLQMIQLMDVLWK 123 (361)
T ss_pred cCCCCCCCceEE-------EEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHH
Confidence 456888886432 23356889999999999999999976 99999999964 999999999999999999999
Q ss_pred cCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHH
Q 000578 1111 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1190 (1412)
Q Consensus 1111 ~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i 1190 (1412)
++. ++|.+++|+|+|+++++||||||+|+.|+++|....... +. ...|.
T Consensus 124 ~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (361)
T cd05174 124 QEG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN-- 172 (361)
T ss_pred HCC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc--
Confidence 764 799999999999999999999999999999986431100 00 00111
Q ss_pred HhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhcccc--CCC
Q 000578 1191 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 1268 (1412)
Q Consensus 1191 ~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~--~l~ 1268 (1412)
.+.+.+||.+.+++ +.|..++.+|++|+|+||++||||||||||++||||+. +|++||||||++|+..+ ...
T Consensus 173 ----~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~ 246 (361)
T cd05174 173 ----KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGI 246 (361)
T ss_pred ----chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCC
Confidence 13567788877765 34556799999999999999999999999999999995 99999999999999753 345
Q ss_pred CCCCCccccccccccccccccc-----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000578 1269 TPERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1326 (1412)
Q Consensus 1269 ~pE~VPFRLTrniv~~mG~~g~-----eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~ 1326 (1412)
.||+||||||++|+++||..|. .|.|+.+|+.++.+||++.+.|++++++++...+.+
T Consensus 247 ~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~ 309 (361)
T cd05174 247 NRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPE 309 (361)
T ss_pred CCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 7999999999999999974322 269999999999999999999999999997554443
No 23
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=3.6e-48 Score=446.01 Aligned_cols=286 Identities=19% Similarity=0.308 Sum_probs=226.4
Q ss_pred HHHHHHHHHHhhhcccccccccccchhhhhhhhcccccccccccccCCCCccccCCCCcccccc-CCeEEEecCCCcceE
Q 000578 992 QMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKV 1070 (1412)
Q Consensus 992 ~~~~~~~~la~~~~~~~~~~~~~~l~~~~~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~ 1070 (1412)
.+++.+..++..-.......++..+.+.+..+..+.. .++..+|++|+.. +.++ .+.+.|++|+++|.+
T Consensus 9 ~~~~~L~~i~~~vk~~~~~~~~~~l~~~~~~l~~~~~--~~~~~lPl~p~~~--------~~~~~~~~c~v~~S~~~Pl~ 78 (353)
T cd05176 9 RLVQLLGAVAEKVRQASSSTRQVVLQEGMERVQSFFQ--KNKCRLPLSPSLV--------AKELNIKVCSFFSSNAVPLK 78 (353)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhcC--CCCCCCCCCccee--------EccEehheeEEecccCCceE
Confidence 3556666665432221122233445555666655422 2356789888532 2222 356899999999999
Q ss_pred EEEEeCC--CceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHH
Q 000578 1071 VECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGD 1148 (1412)
Q Consensus 1071 i~~~gsd--G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~ 1148 (1412)
++|.++| |+.|.+|+|.| ||||||++++|++++||.+|++.. .+|.+++|+|+|+++++|+||||+|+.|+++
T Consensus 79 l~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~ 153 (353)
T cd05176 79 IALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKIWLQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRK 153 (353)
T ss_pred EEEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHH
Confidence 9999999 99999999975 999999999999999999998764 6899999999999999999999999999999
Q ss_pred HhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhH
Q 000578 1149 YLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSM 1228 (1412)
Q Consensus 1149 il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~ 1228 (1412)
|.... |....+ . ...+.+|+....|++..|..+|.+|++|+|+|||
T Consensus 154 I~~~~----~~~~~~------------------------~------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv 199 (353)
T cd05176 154 IQVEY----GVTGSF------------------------K------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCV 199 (353)
T ss_pred HHHHh----CcCCcc------------------------c------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 86431 110000 0 0135667777788889999999999999999999
Q ss_pred HHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC--CCCCCCccccccccccccccccc----cchhHHHHHHHH
Q 000578 1229 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTL 1302 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l--~~pE~VPFRLTrniv~~mG~~g~----eG~Fr~~~~~t~ 1302 (1412)
+||||||||||++||||+ .+|++||||||++|+.++.+ ..||+||||||++|+++||..+. -..|+..|..++
T Consensus 200 ~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af 278 (353)
T cd05176 200 ATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAY 278 (353)
T ss_pred HhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 999999999999999998 69999999999999988643 35899999999999999974322 136999999999
Q ss_pred HHHhcChHHHHHHHHHHccCCCccc
Q 000578 1303 SVMRTNKEALLTIVEVFIHDPLYKW 1327 (1412)
Q Consensus 1303 ~~LR~~~~~l~~iL~~f~~DpL~~W 1327 (1412)
.+||++.+.|++++++++.-.+.+.
T Consensus 279 ~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 279 NLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred HHHHHhHHHHHHHHHHHhCCCCccc
Confidence 9999999999999999986665543
No 24
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=5.7e-49 Score=446.30 Aligned_cols=222 Identities=23% Similarity=0.384 Sum_probs=195.1
Q ss_pred EEecCC-CcceEEEEEeCCC--ceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCcc
Q 000578 1060 MVMNGI-NAPKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1136 (1412)
Q Consensus 1060 ~v~~s~-~~Pk~i~~~gsdG--~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GL 1136 (1412)
+++.+. ..|-.+.+.-.|| ..|.+|+|. +||||||++++|+|++||.+|++. +++|.++||+|||+++++|+
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCcee
Confidence 445444 3566665555555 589999995 599999999999999999999875 47999999999999999999
Q ss_pred ceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHHH
Q 000578 1137 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 1214 (1412)
Q Consensus 1137 IE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~p~~w~~ 1214 (1412)
||||+|++|++++.... .+.+.+||.+.|. ++..|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999986320 1235567778887 4678999
Q ss_pred HHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC-CCCCCCcccccccccccccccccc--
Q 000578 1215 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1291 (1412)
Q Consensus 1215 ~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l-~~pE~VPFRLTrniv~~mG~~g~e-- 1291 (1412)
+|.+|++|+|+|||+||||||||||++|||||. +|++||||||++|++++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999997653 557999999999999999999887
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1292 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1292 G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
|.|+.+|+.++.+||++.+.|++++++|+++|+.+|.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999885
No 25
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=3.3e-48 Score=450.00 Aligned_cols=250 Identities=26% Similarity=0.382 Sum_probs=207.9
Q ss_pred cccccCCCCccccCCCCccccccC-CeEEEecCCCcceEEEEEeC--CCceEeeeeecCccchhhHHHHHHHHHHHHHHH
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~~~-~~v~v~~s~~~Pk~i~~~gs--dG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL 1109 (1412)
.+.+|+||+. .+.++. ++++|++|+++|.+|++.+. +|..|.+|+|.| ||||||++++|+|++||.+|
T Consensus 52 ~~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~ 122 (362)
T cd05173 52 DLQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLW 122 (362)
T ss_pred CCCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHH
Confidence 4568888853 344443 56999999999999999764 799999999965 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
++. .++|.++||+|+|+++++|+||||+|+.|+++|....... +. ...|.
T Consensus 123 k~~----~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~- 172 (362)
T cd05173 123 KEA----GLDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFN- 172 (362)
T ss_pred HHC----CCCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccC-
Confidence 976 4789999999999999999999999999999987431100 00 00111
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccc--cCC
Q 000578 1190 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG--LML 1267 (1412)
Q Consensus 1190 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g--~~l 1267 (1412)
.+.+.+||.+..+ ++.|..++.+|++|+|+|||+||||||||||++||||+ .+|++||||||++|+.. +..
T Consensus 173 -----~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~ 245 (362)
T cd05173 173 -----KDALLNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFG 245 (362)
T ss_pred -----hhHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccC
Confidence 1246677766543 34667789999999999999999999999999999999 59999999999999974 334
Q ss_pred CCCCCCccccccccccccc--ccc---ccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1268 KTPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1268 ~~pE~VPFRLTrniv~~mG--~~g---~eG~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
..||+||||||++|+++|| ..| ..|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 246 ~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 246 IKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 5699999999999999985 333 468999999999999999999999999999988887764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=3.6e-49 Score=443.36 Aligned_cols=229 Identities=42% Similarity=0.772 Sum_probs=177.3
Q ss_pred eEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCC
Q 000578 1080 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1159 (1412)
Q Consensus 1080 ~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~ 1159 (1412)
+|+||+|+ +||+|||+|+||+|+++|.+|++++++++ ++||.|+|+++++||||||+++.||++++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 59999995 59999999999999999999999987655 99999999999999999999999999999764332221
Q ss_pred CCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhh-hhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCC
Q 000578 1160 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1238 (1412)
Q Consensus 1160 ~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~-~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDR 1238 (1412)
...+.... .+...+...+.. ..+.+.++|++.++++++|+.+|++|++|+|++|+++||+|+|||
T Consensus 76 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDNPSRK--------------YKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccccccc--------------cccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 11110000 000012222233 334899999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccc----ccccccchhHHHHHHHHHHHhcChHHHHH
Q 000578 1239 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1314 (1412)
Q Consensus 1239 H~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~m----G~~g~eG~Fr~~~~~t~~~LR~~~~~l~~ 1314 (1412)
||+||||+..||+++|||||++|+ ++.+++||.|||||||||+++| |+.|.+|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8788999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCCcccc
Q 000578 1315 IVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1315 iL~~f~~DpL~~W~ 1328 (1412)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999996
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.3e-47 Score=434.81 Aligned_cols=270 Identities=23% Similarity=0.324 Sum_probs=222.6
Q ss_pred CCeEEEecCC-CcceEEEEEeCCCc-------------eEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccce
Q 000578 1056 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1121 (1412)
Q Consensus 1056 ~~~v~v~~s~-~~Pk~i~~~gsdG~-------------~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~ 1121 (1412)
.++++++.|+ .+|.+++|...|+. .|..|+|.| ||||||++++|+|++||.+|++. .++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~----~ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSA----GLDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHC----CCCeE
Confidence 3678999997 57999999987764 489999965 99999999999999999999975 47999
Q ss_pred eecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000578 1122 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1201 (1412)
Q Consensus 1122 i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1201 (1412)
++||+|+|+++++|+||||+|+.|++++... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999986321 01246778
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC-CCCCCCccccc
Q 000578 1202 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1278 (1412)
Q Consensus 1202 f~~~f~~--p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l-~~pE~VPFRLT 1278 (1412)
|.+.|.+ +..|..+|.+|++|+|+|||+||||||||||++|||||. +|++||||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 479999999999999999999999999999999999996 9999999999999987532 35799999999
Q ss_pred cccccccccccccc---hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccc
Q 000578 1279 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1355 (1412)
Q Consensus 1279 rniv~~mG~~g~eG---~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1412)
++|+++||+.+..| .|+..|..++.+||++.+.|++++++|+...+.++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988665 677789999999999999999999999866655432
Q ss_pred cccchhHHHHHHHHHhhccCCCCCCccCHHHHHHHHHHHccChhhhhhhccccc
Q 000578 1356 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWG 1409 (1412)
Q Consensus 1356 ~~~n~~a~~~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~ 1409 (1412)
..++..+++|+.-.. ...-...++..||+.|.+. --.++|-.|+
T Consensus 261 -------~~~i~~l~~rf~l~~--se~~a~~~~~~lI~~s~~~-~~t~~yD~~q 304 (311)
T cd05167 261 -------GDTIKNLRQRFAPEK--SEREAAEFMLSLIAESYEK-FRTKGYDQFQ 304 (311)
T ss_pred -------HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhc-hhHHHHHHHH
Confidence 114666777764311 1233667889999999884 2234454444
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=5e-45 Score=420.16 Aligned_cols=244 Identities=20% Similarity=0.346 Sum_probs=209.2
Q ss_pred cccccCCCCccccCCCCcccccc-CCeEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhhHHHHHHHHHHHHHHH
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL 1109 (1412)
++.+|++|+.. +.++ .++++|+.|+.+|.+|+|.+.| |..|.+|+|.| ||||||++++|++++||.+|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 56789888642 3333 3678999999999999999998 89999999987 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
++.. .+|.+++|+|+|+++++|+||||+|+.|+++|.... |....+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9875 789999999999999999999999999999987531 1111110
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC--
Q 000578 1190 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1267 (1412)
Q Consensus 1190 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l-- 1267 (1412)
...+.+||.+..|++..|..++.+|++|+|+||++||||||||||++||||+ .+|++||||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCC
Confidence 0136778888889999999999999999999999999999999999999999 59999999999999987532
Q ss_pred CCCCCCcccccccccccccccccc----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCC
Q 000578 1268 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPL 1324 (1412)
Q Consensus 1268 ~~pE~VPFRLTrniv~~mG~~g~e----G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL 1324 (1412)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||++.+.|++++++++.--+
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgi 301 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGI 301 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 358999999999999999753332 369999999999999999999999999985433
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3e-44 Score=413.85 Aligned_cols=246 Identities=22% Similarity=0.373 Sum_probs=204.3
Q ss_pred cccccCCCCccccCCCCcccccc-CCeEEEecCCCcceEEEEEeCCC------ceEeeeeecCccchhhHHHHHHHHHHH
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 1105 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~~s~~~Pk~i~~~gsdG------~~y~~L~K~G~dDLRqD~r~~Qlf~li 1105 (1412)
++.+|++|+. .+.++ .+++.|++|+.+|.+|+|.++|| ..|..|+|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~--------~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAH--------QLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCce--------EEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 5678888853 23343 35789999999999999999998 4689999976 9999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHH
Q 000578 1106 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1185 (1412)
Q Consensus 1106 N~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1185 (1412)
|.+|++.. .+|++++|.|+|+++++|+||||+|+.|+++|.... +....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999864 789999999999999999999999999999986421 100000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhcccc
Q 000578 1186 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1265 (1412)
Q Consensus 1186 ~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~ 1265 (1412)
.|. .+.+++|+.+.++ .+.|..+|.+|++|+|+||++||||||||||++|||||. +|++||||||++|+.++
T Consensus 173 ~~~------~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QFN------SHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred ccC------chhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 000 1356667776654 457889999999999999999999999999999999995 99999999999999875
Q ss_pred C-C-CCCCCCccccccccccccccc-----ccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCc
Q 000578 1266 M-L-KTPERVPFRLTRDIIDGMGVT-----GVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLY 1325 (1412)
Q Consensus 1266 ~-l-~~pE~VPFRLTrniv~~mG~~-----g~e--G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~ 1325 (1412)
. + ..||+||||||++|+..||.- +.+ +.|+..|..++.+||++.+.|++++++++.--+.
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP 313 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMP 313 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4 4 469999999999999998742 223 5899999999999999999999999998744443
No 30
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-36 Score=348.70 Aligned_cols=286 Identities=24% Similarity=0.444 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-cccccccc-chhhhhhhhcccccccccccccCCCCccccCCCCcccccc-CCeEEEe
Q 000578 986 IIRQMKQMVDVYIKLAELETRR-EDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGL-AESVMVM 1062 (1412)
Q Consensus 986 ~~~~~~~~~~~~~~la~~~~~~-~~~~~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~~-~~~v~v~ 1062 (1412)
.+.+-..|++.++++++..... ..+++++. +...+.......+..+..+.+|.+|+. .|.++ .++.+++
T Consensus 497 ~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~F 568 (843)
T KOG0906|consen 497 SLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLF 568 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhcccccccccceeeccCCCCCc--------eEeeecCchhhhh
Confidence 3444557888888887643221 12222221 111222222222344456678888863 44443 4677899
Q ss_pred cCCCcceEEEEEeCCCc-eEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecC
Q 000578 1063 NGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1141 (1412)
Q Consensus 1063 ~s~~~Pk~i~~~gsdG~-~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~ 1141 (1412)
.|...|-+|+|...+|. +|+.++|.| ||||||+.+.|++++|+.+|++.+ .+|.+++|+|+|+++.-|+||+|+
T Consensus 569 kSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~ 643 (843)
T KOG0906|consen 569 KSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVLQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIP 643 (843)
T ss_pred hhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHHHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeec
Confidence 99999999999999998 999999987 999999999999999999999876 699999999999999999999998
Q ss_pred CCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc----hHHHHHHH
Q 000578 1142 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRL 1217 (1412)
Q Consensus 1142 ~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p----~~w~~~R~ 1217 (1412)
+ .||..|+..... ...|+.+..|+- ..=+..+.
T Consensus 644 s-~~la~Ils~~~~------------------------------------------I~~ylke~~p~e~ap~gi~~~v~d 680 (843)
T KOG0906|consen 644 S-KPLARILSEYHS------------------------------------------ILMYLKEDRPDENAPFGISPEVMD 680 (843)
T ss_pred C-CcHHHHHHHHHH------------------------------------------HHHHHHhhCCCcCCCCCCChhHHH
Confidence 6 888888743110 111222223321 12356788
Q ss_pred HHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCcccccccccccccccccc--chhH
Q 000578 1218 AYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFR 1295 (1412)
Q Consensus 1218 ~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~Fr 1295 (1412)
+|.+|||+||+++||||+||||++|+|+++ +|++||||||++||.+ |.|-+.|+.|++.|+++||....+ -.|+
T Consensus 681 nfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHiDFgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~ 756 (843)
T KOG0906|consen 681 NFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFR 756 (843)
T ss_pred HHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEEeeeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHH
Confidence 999999999999999999999999999996 9999999999999988 667778999999999999976543 5799
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHccCCCcccccCh
Q 000578 1296 RCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSP 1331 (1412)
Q Consensus 1296 ~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~~~~ 1331 (1412)
..|..++..||++...|++++++++..-+.+....|
T Consensus 757 s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp 792 (843)
T KOG0906|consen 757 SYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDP 792 (843)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCc
Confidence 999999999999999999999999766555544433
No 31
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=1.7e-33 Score=333.56 Aligned_cols=317 Identities=29% Similarity=0.397 Sum_probs=254.0
Q ss_pred hHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000578 509 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 588 (1412)
Q Consensus 509 ~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~ES~~~ 588 (1412)
+|+++|||||||+||.+..+.... .....+..+|+++.++++|++++|...|+++|..++.++++.+.|||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~-------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQS-------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhc-------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 589999999999999876543211 1122367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 000578 589 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 668 (1412)
Q Consensus 589 ~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~ 668 (1412)
+|+.+++||+|.|||+++++...... .......+.+.|+.|+..++.+|++|+|+|++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~~-------------------~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLSQ-------------------NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc-------------------cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999985422110 12346778999999999999999999999999999
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHH
Q 000578 669 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1412)
Q Consensus 669 vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l 748 (1412)
+++++...++...+|+++|++|||+|+++.|.++|.++..+....... ...+.+|+||++|++|++..||..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999777778999999999999999999999999999987654221111 1245799999999999999999999988
Q ss_pred Hhh-ccCC------------------------------CchhHHHHHHhHhHhhh----hcCChHHHHHhhhhhhccccc
Q 000578 749 SEN-YESN------------------------------EEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 793 (1412)
Q Consensus 749 ~~~-~~~~------------------------------~~~a~ll~llg~Wlaet----r~e~p~~I~~~Yl~~a~~l~~ 793 (1412)
+.+ .... ...++++.++|+|+.+. ..++.++|++.|.+ |+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 1100 12467889999999999 88888899888877 44321
Q ss_pred ccccchhhHHHHhhhhhhhHHHhHHHHHhhHHHHhchHHHHHHHHHHHhhHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q 000578 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1412)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~la~f~D~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~y~~~~~~~~ 873 (1412)
....+++|++|.|+|..+..... .. ...
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~---~~---------------------------~~~------------ 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPR---EK---------------------------EES------------ 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhh---cc---------------------------ccc------------
Confidence 23467899999999888875310 00 000
Q ss_pred HHhhccHHHHHHhHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 000578 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 921 (1412)
Q Consensus 874 ~~~~~d~~e~~~l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~~R~~s 921 (1412)
.+ ..+..|+..||++|++|+.+|+++..+++||+||
T Consensus 317 ------~~------~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 ------SQ------EDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred ------ch------hHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 00 2456899999999999999999999999999986
No 32
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=99.98 E-value=4.2e-32 Score=331.15 Aligned_cols=289 Identities=19% Similarity=0.305 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHhhhcccccccccccchhhhhhhhcccccccccccccCCCCccccCCCCccccccC-CeEEEecCCCcce
Q 000578 991 KQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPK 1069 (1412)
Q Consensus 991 ~~~~~~~~~la~~~~~~~~~~~~~~l~~~~~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~~~-~~v~v~~s~~~Pk 1069 (1412)
.+|+..+-.+|+-........|...|.+.+..+.++ +....|..+|+.|+-.- .++. ..+.+++|...|-
T Consensus 1001 ~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~v--------kGv~i~~CSyFnSNA~PL 1071 (1639)
T KOG0905|consen 1001 HKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDV--------KGVRIRECSYFNSNALPL 1071 (1639)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCceecccCchhee--------ccccccccccccCCCcce
Confidence 457777777776433332333444555555555544 33445778888775322 2221 4577889999999
Q ss_pred EEEEEe--CCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchH
Q 000578 1070 VVECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLG 1147 (1412)
Q Consensus 1070 ~i~~~g--sdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~ 1147 (1412)
+|+|+| -+|..+..++|.| ||||||+.++|++++||.+|.++. .+|++.+|+++|.+-+.|++|.|+|..||.
T Consensus 1072 KitFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~TLr 1146 (1639)
T KOG0905|consen 1072 KITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAETLR 1146 (1639)
T ss_pred EEEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHHHHH
Confidence 999999 7799999999987 999999999999999999999876 799999999999999999999999999999
Q ss_pred HHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhh
Q 000578 1148 DYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASS 1227 (1412)
Q Consensus 1148 ~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S 1227 (1412)
+|-..+ |..+.+ +++ .+.+|+.+.-|++.++-.+..||+.|||++|
T Consensus 1147 KIQve~----GltGsf-----------------kD~-------------pla~WL~KhNp~e~eYekA~eNFiySCAG~c 1192 (1639)
T KOG0905|consen 1147 KIQVEE----GLTGSF-----------------KDR-------------PLAKWLMKHNPSEFEYEKAVENFIYSCAGWC 1192 (1639)
T ss_pred HHHHHh----cccccc-----------------ccc-------------hHHHHHHhcCCCHHHHHHHHHHHHHhcccce
Confidence 986532 211111 011 4578999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC--CCCCCCcccccccccccccccc----ccchhHHHHHHH
Q 000578 1228 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTG----VEGVFRRCCEKT 1301 (1412)
Q Consensus 1228 ~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l--~~pE~VPFRLTrniv~~mG~~g----~eG~Fr~~~~~t 1301 (1412)
+++||||++|||.+|||+.. ||.+||||||-.+|...++ -..+++||-+|.+|..++...+ ....|...|..+
T Consensus 1193 VaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrA 1271 (1639)
T KOG0905|consen 1193 VATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRA 1271 (1639)
T ss_pred eeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999985 9999999999998876543 2479999999999998886433 336799999999
Q ss_pred HHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1302 LSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1302 ~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
+..+|+|.+.|+++|..|+.--+..-.
T Consensus 1272 yNiiRK~t~lllnlL~lM~~agiPeln 1298 (1639)
T KOG0905|consen 1272 YNIIRKNTNLLLNLLRLMACAGIPELN 1298 (1639)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999988776654
No 33
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=99.97 E-value=5.7e-32 Score=324.59 Aligned_cols=249 Identities=23% Similarity=0.353 Sum_probs=204.2
Q ss_pred ccccCCCCccccCCCCccccccCCeEEEecCCCcceEEEEEe----CCCceEeeeeecCccchhhHHHHHHHHHHHHHHH
Q 000578 1034 ATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFG----SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1034 ~~lp~~~~~~y~~~~~~~i~~~~~~v~v~~s~~~Pk~i~~~g----sdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL 1109 (1412)
+.-|.||...... . +.++++||.|+.+|--+.+-. +++ .-..++|+| ||||||..+.|++++|+.+|
T Consensus 766 l~sPLdP~~~lge---l----~iekckvM~SkkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iW 836 (1076)
T KOG0904|consen 766 LQSPLDPSLKLGE---L----IIEKCKVMDSKKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIW 836 (1076)
T ss_pred ccCCCChhhhhcc---h----hhhhhhhhhccCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHH
Confidence 3457777533221 1 236789999999999988753 344 456899987 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
+... .+|.+.+|.++|++...||||.|+++.|+.+|..+..... +.
T Consensus 837 k~~g----lDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~~g~~~-at----------------------------- 882 (1076)
T KOG0904|consen 837 KTEG----LDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLNTGNMA-AT----------------------------- 882 (1076)
T ss_pred HhcC----CCeeccccccccccceeeeEEEecCchhhhhhhhccccce-ee-----------------------------
Confidence 9765 7999999999999999999999999999999864311000 00
Q ss_pred HHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccC-C
Q 000578 1190 VCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1267 (1412)
Q Consensus 1190 i~~~~~p-vl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l 1267 (1412)
.-|.+ .|.+|+-++-|..+..=++-..||.|||+||+++||||+||||.+|||+.+ ||++||||||.++|.++. |
T Consensus 883 --~afn~~~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKl 959 (1076)
T KOG0904|consen 883 --AAFNKDALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKL 959 (1076)
T ss_pred --ccCCHHHHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhc
Confidence 11222 678888777776666778889999999999999999999999999999985 999999999999998864 4
Q ss_pred C-CCCCCcccccccccccccccccc------chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000578 1268 K-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1328 (1412)
Q Consensus 1268 ~-~pE~VPFRLTrniv~~mG~~g~e------G~Fr~~~~~t~~~LR~~~~~l~~iL~~f~~DpL~~W~ 1328 (1412)
. ..|+|||-||++++..|+-.+.+ +.|+.+|+.++.+||+|...+++++..++--.|.+-+
T Consensus 960 Gi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 960 GINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred CcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 4 57999999999999999764432 5799999999999999999999999999987776543
No 34
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-25 Score=268.77 Aligned_cols=196 Identities=23% Similarity=0.400 Sum_probs=172.0
Q ss_pred ceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCC
Q 000578 1079 HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGG 1158 (1412)
Q Consensus 1079 ~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~ 1158 (1412)
.....|+|.| |||||+....||+..|-.+|...+ -.|+||+|+|+-+|.++||||-|.|++++|.|-..
T Consensus 586 dL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~------ 654 (847)
T KOG0903|consen 586 DLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKR------ 654 (847)
T ss_pred ceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHh------
Confidence 3456789987 999999999999999999999876 58999999999999999999999999999997421
Q ss_pred CCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC-CchHHHHHHHHHHHhhhhhhHHHhhhccCC
Q 000578 1159 AHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL-QPAYWFEKRLAYTRSVAASSMVGYIVGLGD 1237 (1412)
Q Consensus 1159 ~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~-~p~~w~~~R~~ft~S~A~~S~vgyilGLGD 1237 (1412)
+ +. + -.+++||...++ +...|-.+.+||..|+|+||+|+|+|.|.|
T Consensus 655 ----l-~~-----------------------~-----~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKD 701 (847)
T KOG0903|consen 655 ----L-PN-----------------------L-----ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKD 701 (847)
T ss_pred ----c-ch-----------------------h-----hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0 00 0 124466666653 677899999999999999999999999999
Q ss_pred CCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccccccc----hhHHHHHHHHHHHhcChHHHH
Q 000578 1238 RHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALL 1313 (1412)
Q Consensus 1238 RH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~~~~t~~~LR~~~~~l~ 1313 (1412)
||..|||||. -|+|+|||||+.+...+..---|..||+||.++++.|| |++| .|+..|-..+.++|+|.+-|.
T Consensus 702 RHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadrIv 778 (847)
T KOG0903|consen 702 RHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADRIV 778 (847)
T ss_pred ccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 99999999999999887766679999999999999999 7777 589999999999999999999
Q ss_pred HHHHHHcc
Q 000578 1314 TIVEVFIH 1321 (1412)
Q Consensus 1314 ~iL~~f~~ 1321 (1412)
.+.|+|-.
T Consensus 779 ~lvEiMq~ 786 (847)
T KOG0903|consen 779 LLVEIMQD 786 (847)
T ss_pred HHHHHhhc
Confidence 99999853
No 35
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.93 E-value=3.8e-25 Score=276.02 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=174.9
Q ss_pred eeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhccCCCCCCC
Q 000578 1083 QLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGR 1162 (1412)
Q Consensus 1083 ~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~~~~~~~r 1162 (1412)
-++|.| ||+|||....|++.++..+++.-. .++.+.+|+|+|.+|.||+||.|||+.+-+.+-..
T Consensus 1548 ~IFKvG-DDcRQD~LaLQiislf~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~---------- 1612 (1803)
T KOG0902|consen 1548 AIFKVG-DDCRQDMLALQIISLFKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRE---------- 1612 (1803)
T ss_pred hhhhcC-chHHHHHHHHHHHHHHHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhccc----------
Confidence 689987 999999999999999999998754 78999999999999999999999999987654110
Q ss_pred CCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHHHHHHHHHHhhhhhhHHHhhhccCCCCC
Q 000578 1163 YGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHA 1240 (1412)
Q Consensus 1163 ~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~p~~w~~~R~~ft~S~A~~S~vgyilGLGDRH~ 1240 (1412)
. ..-+.+||..+|. +...+-.+|.||.+|+|+||+++|+|.+.|||.
T Consensus 1613 -t------------------------------~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHN 1661 (1803)
T KOG0902|consen 1613 -T------------------------------DNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHN 1661 (1803)
T ss_pred -c------------------------------cccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccC
Confidence 0 0134667777776 467899999999999999999999999999999
Q ss_pred CeEEEecCCCcEEEEecchhhccccCC-CCCCCCccccccccccccccccc---cchhHHHHHHHHHHHhcChHHHHHHH
Q 000578 1241 MNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGV---EGVFRRCCEKTLSVMRTNKEALLTIV 1316 (1412)
Q Consensus 1241 ~NILld~~tG~vvhIDfg~~f~~g~~l-~~pE~VPFRLTrniv~~mG~~g~---eG~Fr~~~~~t~~~LR~~~~~l~~iL 1316 (1412)
+|||||. -|+++|||||++||..+.- -.-|. ||+||.+|+..||..-- -..|...|+.++-+.|.+.+.|....
T Consensus 1662 GNim~Dd-~G~~iHIDFGf~~e~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V 1739 (1803)
T KOG0902|consen 1662 GNIMIDD-QGHIIHIDFGFMFESSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLV 1739 (1803)
T ss_pred CceeEcc-CCCEEEEeeeeEEecCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 9999994 9999999999999976542 23466 99999999999994221 13688899999999999999999999
Q ss_pred HHHccCCCcccccChhHHH
Q 000578 1317 EVFIHDPLYKWALSPLKAL 1335 (1412)
Q Consensus 1317 ~~f~~DpL~~W~~~~~~~~ 1335 (1412)
+.|+.-.|.++...+.+.+
T Consensus 1740 ~~mldsgLPCfrg~~i~nl 1758 (1803)
T KOG0902|consen 1740 QSMLDSGLPCFRGQTIGNL 1758 (1803)
T ss_pred HHHHhcCCCccCcchHHHH
Confidence 9999999999977665544
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.91 E-value=7.6e-25 Score=257.84 Aligned_cols=165 Identities=20% Similarity=0.344 Sum_probs=135.6
Q ss_pred CcceEEEEEeCCCce-----------EeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCC
Q 000578 1066 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1134 (1412)
Q Consensus 1066 ~~Pk~i~~~gsdG~~-----------y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~ 1134 (1412)
.+|.-+.+..-+|.. |.+|+|. +|||||+.|.|++++|+.||+++. .+|.+.+|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 388888888888877 9999995 699999999999999999999876 69999999999999999
Q ss_pred ccceecCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHH
Q 000578 1135 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1214 (1412)
Q Consensus 1135 GLIE~v~~t~sL~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~ 1214 (1412)
|+||+|++. +|..|... -+.+||. +.++.
T Consensus 1100 GLIEfVps~-tLAsI~~~--------------------------------------------~Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM--------------------------------------------DIASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh--------------------------------------------HHHHHHH--hcCcH----
Confidence 999999974 56655310 0112222 12221
Q ss_pred HHHHHHHhhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccc
Q 000578 1215 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1288 (1412)
Q Consensus 1215 ~R~~ft~S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~ 1288 (1412)
...||++|+|.||+++||||+||||++||||+. +|.+||||||++|+....-+.+-+.|.|+-.+|..++|.+
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~ 1201 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQC 1201 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHH
Confidence 246999999999999999999999999999996 9999999999999976544456667999999998776543
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.32 E-value=3.4e-13 Score=103.11 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=27.7
Q ss_pred ccCHHHHHHHHHHHccChhhhhhhccccccCC
Q 000578 1381 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1381 ~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1412 (1412)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 68999999999999999999999999999997
No 38
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=1.1e-08 Score=138.16 Aligned_cols=232 Identities=8% Similarity=-0.156 Sum_probs=160.3
Q ss_pred EEEeCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhh
Q 000578 1072 ECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLI 1151 (1412)
Q Consensus 1072 ~~~gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~ 1151 (1412)
+..++++...+...| +.+++|+++..++. +...++.|++.|-..+|.++++....+|-+|+.|+....+...
T Consensus 2182 se~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~ 2253 (2806)
T KOG0892|consen 2182 SEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESD 2253 (2806)
T ss_pred HHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Confidence 444455544444444 56899999998886 3344455678899999999999999999999999887655432
Q ss_pred hhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHH---HcCCchHHHHHHHHHHHhhhhhhH
Q 000578 1152 GSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE---RFLQPAYWFEKRLAYTRSVAASSM 1228 (1412)
Q Consensus 1152 ~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~---~f~~p~~w~~~R~~ft~S~A~~S~ 1228 (1412)
. ...+.+-|+.+..+....+.+.+... +.++++.=+-+|.|++.++--+ ...++-.|...+.-|..+.+.-.-
T Consensus 2254 ~--~D~~~i~R~cslWfsns~~~evn~~m--k~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyh 2329 (2806)
T KOG0892|consen 2254 E--YDVDLIFRCCSLWFSNSHLKEVNNSL--KHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYH 2329 (2806)
T ss_pred c--ccHHHHHHHhhhhccccchHHHHHHH--HHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchH
Confidence 1 11123333333222222222221111 2222222244677766654322 355778899999999999999999
Q ss_pred HHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccccccchhHHHHHHHHHHHhcC
Q 000578 1229 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTN 1308 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~~ 1308 (1412)
..|+|+.+++|--+. .-+-.|.+ | ++.+++||++|+...++++++.++.++++.|++.+.-+- ..
T Consensus 2330 tly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~~yI~lAn-l~ 2394 (2806)
T KOG0892|consen 2330 TLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCEAYISLAN-LK 2394 (2806)
T ss_pred HHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHHHHHHHHHHHHHhc-Cc
Confidence 999999998887761 11222222 2 778999999999999999999999999999999988887 66
Q ss_pred hHHHHHHHHHHccCCCcccccC
Q 000578 1309 KEALLTIVEVFIHDPLYKWALS 1330 (1412)
Q Consensus 1309 ~~~l~~iL~~f~~DpL~~W~~~ 1330 (1412)
.....+.......++...|...
T Consensus 2395 ~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2395 TSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred ccccchhhhhhcCccccHHHhh
Confidence 6777888888888888888754
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.02 E-value=2.3 Score=56.49 Aligned_cols=318 Identities=12% Similarity=0.029 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCccccccccc-----c----
Q 000578 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1412)
Q Consensus 336 l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~---- 406 (1412)
..++.....+|-+..|+-+++...... ...+.....|-.+|...++++.+.-+... +
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA--------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 345566666666666666666543210 01133455566777777776665544210 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhh
Q 000578 407 KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 486 (1412)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~ 486 (1412)
.......-|+..|+|++|+.+|+..+... |+ +.....++.+++...|.++
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~-------------~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-----------------PD-------------NTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CC-------------CHHHHHHHHHHHHHcCCHH
Confidence 12234466778888888888888877753 22 1224567778888888777
Q ss_pred HHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHH
Q 000578 487 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRK 566 (1412)
Q Consensus 487 ~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al~~~d~~~f~~~ 566 (1412)
....+.+.+.... ...+........+..+.|+|+.-..+... ... ..++.. ...+-+....+.|+.+++...
T Consensus 687 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 687 SAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRK-ALK-RAPSSQ---NAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHH-HHh-hCCCch---HHHHHHHHHHHCCCHHHHHHH
Confidence 6665555544321 11223333344566677888743221100 000 001111 111112223345788777777
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHHHH
Q 000578 567 LKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEW 645 (1412)
Q Consensus 567 i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvr-Lq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W 645 (1412)
+.++... ...+. .++..+.. +..+.+.++..+...+... ..|.. ......-.|
T Consensus 759 ~~~~l~~--------~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------~~p~~----~~~~~~l~~ 812 (899)
T TIGR02917 759 LEAWLKT--------HPNDA-VLRTALAELYLAQKDYDKAIKHYRTVVK-------------KAPDN----AVVLNNLAW 812 (899)
T ss_pred HHHHHHh--------CCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHH-------------hCCCC----HHHHHHHHH
Confidence 6654432 01111 11111111 1122333333321100000 00100 001111112
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhh
Q 000578 646 SSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGR 725 (1412)
Q Consensus 646 ~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~ 725 (1412)
-....+ + -+.+-.+++.+ . ........|...+......|++..|...+.++....+. +..+.
T Consensus 813 ~~~~~~---~---~~A~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~ 874 (899)
T TIGR02917 813 LYLELK---D---PRALEYAEKAL-K---LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--------AAAIR 874 (899)
T ss_pred HHHhcC---c---HHHHHHHHHHH-h---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------ChHHH
Confidence 211110 0 11111111111 1 11122334556778888999999999988776554321 22345
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHH
Q 000578 726 LEEAKLLRAQGQHEMAINLAKYIS 749 (1412)
Q Consensus 726 iE~AklLWaqGe~~~AI~~Lq~l~ 749 (1412)
+..|..+|+.|+...|+.+++.++
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 678999999999999999987765
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.88 E-value=40 Score=44.74 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhH
Q 000578 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1412)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ 760 (1412)
..+...+...++.|+...|...+.++.... |.+..+....|.++...|+...|+..++.+++..+. .+.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 805 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAV 805 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHH
Confidence 456677888899999999988877655432 122334577889999999999999999888776442 234
Q ss_pred HHHHHhHhHhhhhcCChHHHHHhhhhhhcc
Q 000578 761 VYRLVGKWLAESRSSNSRIILENYLKPAVS 790 (1412)
Q Consensus 761 ll~llg~Wlaetr~e~p~~I~~~Yl~~a~~ 790 (1412)
++..+|.-...... +. -..|++.++.
T Consensus 806 ~~~~l~~~~~~~~~--~~--A~~~~~~~~~ 831 (899)
T TIGR02917 806 VLNNLAWLYLELKD--PR--ALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhcCc--HH--HHHHHHHHHh
Confidence 44444444333222 33 2345555543
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.41 E-value=82 Score=41.71 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=146.2
Q ss_pred HHHHHHHHHhhcCCCccccccccc------cchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCc
Q 000578 382 HIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSV 455 (1412)
Q Consensus 382 ~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~ 455 (1412)
....|++.|..-++.|.+..+... .+-...|.-|-+.|++++|+..|+.-.+.+ ..|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd- 324 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID- 324 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC-
Confidence 456788999999988888777542 134578899999999999999998766543 1244
Q ss_pred CCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCC
Q 000578 456 HLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPS 535 (1412)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~ 535 (1412)
...+..+++++-.+|..+......+.+.... ...+....-.-..+--+.|.++....+- .. +.
T Consensus 325 -------------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf-~~-m~ 387 (697)
T PLN03081 325 -------------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVF-DR-MP 387 (697)
T ss_pred -------------HHHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHH-Hh-CC
Confidence 1246678888888887655433322222211 1111112222223334455554322210 00 10
Q ss_pred CCCcccchhhhhHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHhhhhhcc
Q 000578 536 GQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSS 613 (1412)
Q Consensus 536 ~~~~~~~~f~~~l~~aL~Al-~~~d~~~f~~~i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvr-Lq~L~ELE~i~el~~~~~ 613 (1412)
.++...|+.. +.+. +.|+.+++.+..+..... .+ .--...|..++. +-....+++..++.....
T Consensus 388 --~~d~~t~n~l----I~~y~~~G~~~~A~~lf~~M~~~---g~-----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 388 --RKNLISWNAL----IAGYGNHGRGTKAVEMFERMIAE---GV-----APNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred --CCCeeeHHHH----HHHHHHcCCHHHHHHHHHHHHHh---CC-----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 1233345432 2333 568888888888765432 11 111111333332 111122222222111100
Q ss_pred CCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Q 000578 614 GESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKG 693 (1412)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRka 693 (1412)
.. ..+.|.. ..+...+...-+.-.+-|. ...+-+ ... .....+|-.....|++.
T Consensus 454 ~~-------------~g~~p~~-------~~y~~li~~l~r~G~~~eA----~~~~~~-~~~-~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 454 EN-------------HRIKPRA-------MHYACMIELLGREGLLDEA----YAMIRR-APF-KPTVNMWAALLTACRIH 507 (697)
T ss_pred Hh-------------cCCCCCc-------cchHhHHHHHHhcCCHHHH----HHHHHH-CCC-CCCHHHHHHHHHHHHHc
Confidence 00 0000110 0122222211111111111 111111 111 22345688888999999
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhh
Q 000578 694 FRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1412)
Q Consensus 694 g~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~ 751 (1412)
|+++.|..+..++..+.+. +.....-.++.+=..|+.+.|.++++.+.++
T Consensus 508 g~~~~a~~~~~~l~~~~p~--------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCcHHHHHHHHHHhCCCCC--------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999988776555322 1112334577788889999999998877654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=84.40 E-value=1.1e+02 Score=37.76 Aligned_cols=58 Identities=14% Similarity=-0.107 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHH
Q 000578 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1412)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~ 747 (1412)
...+-.+++|-..+.+..|...+..+.... |.. ...++.|.+++..|++..|.++-+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566899999999999999987765442 111 2247899999999999999888653
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.29 E-value=1.1e+02 Score=42.56 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=54.6
Q ss_pred cHHHHHHHHHhhcCCCcccccccc----------ccchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCC
Q 000578 381 RHIEILVSAVTQINEPDSLYGIIQ----------SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPH 450 (1412)
Q Consensus 381 ~~~e~L~~Iy~~IdePD~~yGi~~----------~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~ 450 (1412)
.....|+..|...++.|.+..+.. ..+....|.-|-+.|++++|+..|+.-.+.+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--------------- 537 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--------------- 537 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------
Confidence 346678888888888877666542 1134467788888888888888887765543
Q ss_pred CCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhhh
Q 000578 451 GLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 493 (1412)
Q Consensus 451 ~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~ 493 (1412)
..|+ ...+..+++++-..|..+......+
T Consensus 538 v~PD--------------~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 538 VKPD--------------RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1244 1246678888887776655544333
No 44
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=84.15 E-value=7.6 Score=47.25 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=84.6
Q ss_pred eCCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhc
Q 000578 1075 GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGST 1154 (1412)
Q Consensus 1075 gsdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~ 1154 (1412)
-++|. +.+.|+ .+++.|.....|+..+|.-.... .+.++++++++-+..-|-.|||++..- .
T Consensus 67 f~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c-~------- 128 (370)
T PF13575_consen 67 FSSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPC-N------- 128 (370)
T ss_pred ECCCC--EEEEeC--cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCC-C-------
Confidence 34664 457896 69999999999999999875422 367888899998877999999985211 0
Q ss_pred cCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhc
Q 000578 1155 RNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1234 (1412)
Q Consensus 1155 ~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilG 1234 (1412)
+ +.+ -.+|=+-++....+.|+||
T Consensus 129 ------------------------~---~~e------------------------------v~~yY~r~G~llal~y~L~ 151 (370)
T PF13575_consen 129 ------------------------S---EEE------------------------------VERYYYRLGVLLALLYLLN 151 (370)
T ss_pred ------------------------C---HHH------------------------------HHHHHHHHHHHHHHHHHhC
Confidence 0 000 0134456788888999999
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhhcc
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAFEQ 1263 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f~~ 1263 (1412)
..|=|-+||.-+ -+..|-||+-.+|..
T Consensus 152 ~~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 152 GTDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CCcccccceEEe--CCCcEEEehhhhCCc
Confidence 999999999996 588999999988875
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=83.30 E-value=1.3e+02 Score=39.54 Aligned_cols=116 Identities=7% Similarity=0.004 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCccccccccc-----c--
Q 000578 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 406 (1412)
Q Consensus 334 d~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~-- 406 (1412)
+...++.+..+-|-+..|+-.++...... ...++.+..|.-.....+++|.+.-.... +
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--------------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--------------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 46788889999999999998888755432 11133344455555556666655444321 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhch
Q 000578 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1412)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~ 484 (1412)
-......-|...|++++|+..|+..+... |+ +...+..+.+++...|.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----------------P~-------------~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-----------------SG-------------NSQIFALHLRTLVLMDK 159 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CC-------------cHHHHHHHHHHHHHCCC
Confidence 12233456788899999999999998864 33 22245677888888997
Q ss_pred hhHHHHhhh
Q 000578 485 MHVLDMYCK 493 (1412)
Q Consensus 485 ~~~L~~~~~ 493 (1412)
......+.+
T Consensus 160 ~~eA~~~~~ 168 (656)
T PRK15174 160 ELQAISLAR 168 (656)
T ss_pred hHHHHHHHH
Confidence 665544333
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=76.83 E-value=1.1e+02 Score=42.45 Aligned_cols=299 Identities=12% Similarity=0.125 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccc---------
Q 000578 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------- 404 (1412)
Q Consensus 334 d~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~--------- 404 (1412)
-|..+-.+..+||.+..|+-.++.-.+. . ..+.......|+..|.+.++.|.+..+..
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~----------G---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNA----------G---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHc----------C---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 4678888889999999999777663221 0 11223457789999999999998876642
Q ss_pred -ccchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhc
Q 000578 405 -SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1412)
Q Consensus 405 -~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG 483 (1412)
..+....|.-|-+.|++++|+..|+.-...... ..|+ ...+.-++.++-..|
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~G 593 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANAG 593 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHCC
Confidence 123557889999999999999999887653210 1244 124667889999889
Q ss_pred hhhHHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHH-hcCChHH
Q 000578 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTAL-REGDSEE 562 (1412)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al-~~~d~~~ 562 (1412)
..+.+....+.+.... ........-....+-=+.|++|....+-..-......++...|+.. +.+. +.|+.+.
T Consensus 594 ~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL----I~a~~k~G~~ee 667 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL----VDVAGHAGDLDK 667 (1060)
T ss_pred CHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhCCCHHH
Confidence 8766655444443321 1111111222233344566665433211000000011232333322 2222 5688888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHH
Q 000578 563 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1412)
Q Consensus 563 f~~~i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1412)
+.+.++.++.. .+ ......|..+=....+...+.+-..+++ .... .+ ..| + .
T Consensus 668 A~~l~~eM~k~---G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~---eM~~--------~g---~~P---d-------v 719 (1060)
T PLN03218 668 AFEILQDARKQ---GI-KLGTVSYSSLMGACSNAKNWKKALELYE---DIKS--------IK---LRP---T-------V 719 (1060)
T ss_pred HHHHHHHHHHc---CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH---HHHH--------cC---CCC---C-------H
Confidence 88777765532 11 1112233332222233333333333322 1100 00 011 1 1
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000578 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1412)
Q Consensus 643 ~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l 709 (1412)
..|+..+...-..-.+-+.+--++...-.=+.+...+...++ ..|.+.|+++.|...+.+++..
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL---~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL---VASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHc
Confidence 357777776644433333333333221110112333344443 6788889999999888776543
No 47
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=73.49 E-value=45 Score=39.00 Aligned_cols=30 Identities=27% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHhhhccCCCCCCeEEEecCCCcEEEEecchh
Q 000578 1229 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
..+.+.=||=|++||+++. |.+.-|||+.+
T Consensus 185 ~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 185 KIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred CcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 3566778999999999985 78999999954
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=71.05 E-value=4.5e+02 Score=37.18 Aligned_cols=65 Identities=15% Similarity=-0.078 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1412)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~ 752 (1412)
...++..+.+..+.|++..|...+..+.... |.+.......|.++=..|+...|+..++.++...
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATA--------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 4567777888888999999988877654331 1122234455776668899999999988877643
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=69.93 E-value=1.3e+02 Score=39.96 Aligned_cols=283 Identities=11% Similarity=0.047 Sum_probs=154.1
Q ss_pred HHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccc----------
Q 000578 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------- 404 (1412)
Q Consensus 335 ~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~---------- 404 (1412)
|..+..+-.+||-+..|...++.-. .+.......|+..|.+-+++|.+..+..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~-----------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP-----------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC-----------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 5667778889999999988776411 1113346779999999999988776642
Q ss_pred ccchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhch
Q 000578 405 SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1412)
Q Consensus 405 ~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~ 484 (1412)
..+....+..|-+.|++++|...|+...+.+. .|+ ...+..++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~---------------~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF---------------PLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC---------------CCC--------------eeehHHHHHHHHHCCC
Confidence 12466788999999999999999988887541 132 2245678888888887
Q ss_pred hhHHHHhhhccccccCCCCCCccchHHHHHHHHhcCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHH-hcCChHHH
Q 000578 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTAL-REGDSEEF 563 (1412)
Q Consensus 485 ~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~l~~aL~Al-~~~d~~~f 563 (1412)
.+.+....+.+.... .........+-=+.|+++....+-..-......++...|.. .|.|. +.|+.++.
T Consensus 376 ~~~A~~vf~~m~~~d------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~----ll~a~~~~g~~~~a 445 (697)
T PLN03081 376 MEDARNVFDRMPRKN------LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA----VLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHHHhCCCCC------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH----HHHHHhcCCcHHHH
Confidence 766655444432210 11111112222334444422211000000011123333432 33333 66888887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000578 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1412)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~Y~~lvrLq~L~ELE~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1412)
.+..+.....- .+ .-..+.|..+=+.+.|...+.|-.++++ . .|..|+ ..
T Consensus 446 ~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~---~-----------------~~~~p~-------~~ 495 (697)
T PLN03081 446 WEIFQSMSENH--RI-KPRAMHYACMIELLGREGLLDEAYAMIR---R-----------------APFKPT-------VN 495 (697)
T ss_pred HHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCCHHHHHHHHH---H-----------------CCCCCC-------HH
Confidence 77777654320 11 1122344444344444344444444332 1 011112 13
Q ss_pred HHHHHHHhhhh--hhhhhhhhHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000578 644 EWSSILKRTQL--HMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1412)
Q Consensus 644 ~W~~rl~~~~~--~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l 709 (1412)
.|...+..+.. +++.-+ . +.-+++++.-....++...++..-++|++..|.....+++..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~--~----~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGR--L----AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHH--H----HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 58988887753 333222 1 222222322222334455567888999999999988777654
No 50
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=69.40 E-value=20 Score=31.46 Aligned_cols=61 Identities=16% Similarity=-0.026 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 685 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 685 ~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
..|...-+.|++..|.+.+.++.... |.+..+.+..+.+++.+|+...|+..++.+++..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35778889999999999988865432 33455678899999999999999999988776543
No 51
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=69.29 E-value=5.7 Score=43.34 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=35.1
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccccccchhHHHHHHHHHHHhc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1307 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~LR~ 1307 (1412)
+|=||+|||++ +|++.=||||.+-... .| ...|.+++-++.++...|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~~----~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVELD----HP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceecC----CC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999998 8999999999865421 11 3345667777777666654
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=66.10 E-value=3.4e+02 Score=35.86 Aligned_cols=67 Identities=16% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
....|...+.++.+.|+++.|...+.++..+.+. ...+..-.+.++...|+...|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--------LPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4567778899999999999999988877655321 223345679999999999999999988776543
No 53
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.40 E-value=12 Score=32.94 Aligned_cols=55 Identities=20% Similarity=-0.014 Sum_probs=42.5
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
-+.|+++.|...+.++.... |.+..+.+..|+.+..+|+...|..+++.+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46788999999887765543 22345678999999999999999999988877654
No 54
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=62.57 E-value=4.6 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFE 1262 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~ 1262 (1412)
||=+|+|||++ +|.+.=||||.+-.
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~ 166 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVE 166 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEcccccc
Confidence 89999999998 59999999998653
No 55
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=61.61 E-value=6.9 Score=49.37 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=28.2
Q ss_pred hhhhhhH--HHhhhccCCCCCCeEEEecCCCcEEEEecchhhc
Q 000578 1222 SVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1262 (1412)
Q Consensus 1222 S~A~~S~--vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~ 1262 (1412)
.||+=|+ +||| =-|--|+|||||+ .|.+=-.|||.|-+
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEcc-CCceeeeecccccc
Confidence 4555554 2222 2477899999997 99999999999854
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=61.42 E-value=2.7e+02 Score=36.27 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=37.3
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHh
Q 000578 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 750 (1412)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~ 750 (1412)
+..|++..|...+.++..+.+ ....+.+..|++++.+|+...|+..++..++
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p--------~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDP--------ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445888899888776554421 1223456789999999999999998865543
No 57
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.37 E-value=81 Score=37.68 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHH------HHHh----------h-----c----------CchHHHHHHHHHHH
Q 000578 640 WLNTEWSSILKRTQLHMNLLEPFMAFRRV------LLQI----------L-----S----------CKDFTMQHLLESAS 688 (1412)
Q Consensus 640 ~l~~~W~~rl~~~~~~~~~~EpiL~~R~~------vl~i----------l-----~----------~~~~~~~~wl~~A~ 688 (1412)
.+.+.|.+.+..-..++.+|..+|.+++. +-.+ | + ..+.++...++.+.
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 35566777776666677777777766644 1111 1 0 12446677889999
Q ss_pred HHHhcCChhHHHHHHHHHHhhcCC-CCCCCCchhhhhhHHHHHHHHHCCC
Q 000578 689 TLRKGFRLSQAAAALHELKFLYTG-PGDQCSTVYWLGRLEEAKLLRAQGQ 737 (1412)
Q Consensus 689 laRkag~~~~A~~aL~~l~~l~~~-~~~q~~~~~~~a~iE~AklLWaqGe 737 (1412)
.+|.+|+...|.+.+..+..+.-- ....... .....++.-.-+|+.|-
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~-~~~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNFFRPESLSSS-SFSERLESFEEFWESEV 211 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHcCCccccccc-cHHHHHHHHHHHhCcCC
Confidence 999999999999876555554321 0111010 00145777788998864
No 58
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=56.49 E-value=23 Score=36.15 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=51.3
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhh
Q 000578 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1412)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~ 492 (1412)
.-|...|+.++|..+|+..+..+.+ +. .-.....++-.+|.++|..+......
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~---------------~~------------~~~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLS---------------GA------------DRRRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC---------------ch------------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678899999999999999985421 00 12346778889999999877665544
Q ss_pred hccccccCCCCCCccchHHHHHHHHhcCCCC
Q 000578 493 KGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 523 (1412)
Q Consensus 493 ~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD 523 (1412)
+......+..+....+..+..-+.+.+|.++
T Consensus 62 ~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 62 EEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 4433322211223333434444555555554
No 59
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=56.39 E-value=8.8 Score=43.42 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=39.1
Q ss_pred hhhhhhHHHhhhccCCCCCCeEEEecCCCcEEEEecchhhccccCC
Q 000578 1222 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1267 (1412)
Q Consensus 1222 S~A~~S~vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l 1267 (1412)
.+.-++++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 56678888999999999999999986 9999999999999865333
No 60
>PLN03077 Protein ECB2; Provisional
Probab=55.26 E-value=7e+02 Score=33.94 Aligned_cols=64 Identities=13% Similarity=-0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhh
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1412)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~ 751 (1412)
...|-.....||..|+.+.|+.+..++.++.+. +....+-.++++=..|..+.|.++.+.+..+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~--------~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPN--------SVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------CcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 455666667889999999988887776665432 1222345567777788888888888777654
No 61
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=55.20 E-value=7.3 Score=39.89 Aligned_cols=37 Identities=22% Similarity=0.543 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCCCCCccCHHHHHHHHHHHccChhhhhhhccccccC
Q 000578 1365 ALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1411 (1412)
Q Consensus 1365 ~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~Pw 1411 (1412)
.++.++++|.| |||.++|.||-+.=|+.+|-..|.||
T Consensus 93 d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 93 DVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred HHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 46667777776 68999999999999999999999999
No 62
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=54.61 E-value=16 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.6
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchh
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
=||-||.|||++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 389999999999 799999999864
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.64 E-value=1.1e+02 Score=36.33 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCcccccccc-c--------c
Q 000578 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ-S--------H 406 (1412)
Q Consensus 336 l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~-~--------~ 406 (1412)
..++|.=.+-|||-+|=-++...... .+.++..-+|-.+|..||+|..+--+.. + .
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 57888888889998886655443221 1346777889999999999998654432 1 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHhhcc
Q 000578 407 KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1412)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1412)
-+--+.+-||-.|+.++|+.+|...+...
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 23456789999999999999999999865
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=52.73 E-value=1.3e+02 Score=33.15 Aligned_cols=68 Identities=10% Similarity=-0.154 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHH-HCCC--hHHHHHHHHHHHhhcc
Q 000578 678 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 753 (1412)
Q Consensus 678 ~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLW-aqGe--~~~AI~~Lq~l~~~~~ 753 (1412)
.....|...++++...|++..|..++.++..+.+. +.......|.+|+ ..|+ ...|+.+++..++..+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45778999999999999999999999887766432 2334577899886 5566 4899999987776543
No 65
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=52.15 E-value=65 Score=28.71 Aligned_cols=59 Identities=17% Similarity=-0.045 Sum_probs=46.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccC
Q 000578 688 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1412)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~ 754 (1412)
.++...++++.|...+-.+..+.+. +....+..|..+...|+...|+..++..++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4667788999999988777665322 3345688999999999999999999888866553
No 66
>PRK14879 serine/threonine protein kinase; Provisional
Probab=51.97 E-value=22 Score=38.92 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.3
Q ss_pred CCCCCCeEEEecCCCcEEEEecchh
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
||-+|.|||++ .|.+.-||||.+
T Consensus 119 ~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 119 GDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred CCCCcccEEEE--CCCEEEEECCcc
Confidence 89999999999 799999999965
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=51.72 E-value=4.9e+02 Score=31.13 Aligned_cols=95 Identities=22% Similarity=0.145 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHH
Q 000578 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 762 (1412)
Q Consensus 683 wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ll 762 (1412)
+...+....+.|++..|...+.++....+. ... ..-.++++..+|+...|+..++..++..+ ....+.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--------~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P---~~~~~~ 319 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPG--------ADL-LLALAQLLEEQEGPEAAQALLREQLRRHP---SLRGFH 319 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCc---CHHHHH
Confidence 344466777889999999988776654221 111 25679999999999999999987776533 344556
Q ss_pred HHHhHhHhhh---hcCChHHHHHhhhhhhc
Q 000578 763 RLVGKWLAES---RSSNSRIILENYLKPAV 789 (1412)
Q Consensus 763 ~llg~Wlaet---r~e~p~~I~~~Yl~~a~ 789 (1412)
.+++.++.+. +....-.++++.++..+
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 6777777654 34455555666665443
No 68
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=51.51 E-value=12 Score=39.41 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=24.5
Q ss_pred HhhhccCCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1230 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1230 gyilGLGDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
.+.+-=||=||+||+++ .|++.-|||+.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 44455599999999999 6889999999753
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=50.07 E-value=64 Score=28.45 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCC-ChHHHHHHHHHHHh
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 750 (1412)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqG-e~~~AI~~Lq~l~~ 750 (1412)
...|...|..+...|++..|.....++..+.+ .+..+.+-.+..+|.+| +...|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35688889999999999999999988776642 23445678899999999 68999998876554
No 70
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=49.78 E-value=11 Score=43.96 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=29.1
Q ss_pred hhhHHHhhhccC----CCCCCeEEEecCCCcEEEEecchhh
Q 000578 1225 ASSMVGYIVGLG----DRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1225 ~~S~vgyilGLG----DRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
+.+.+-|+=+++ |--|+|||||+ +|.+=-+|||++=
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~-~G~iKitDFGFAK 192 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQ-NGHIKITDFGFAK 192 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeecc-CCcEEEEeccceE
Confidence 455667776554 88999999996 9999999999873
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.85 E-value=21 Score=27.08 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCcchhhchHHHHHHHHhc
Q 000578 94 VLKILKKYLMDDSVQIVDMTSQTLRGILS 122 (1412)
Q Consensus 94 il~~l~~~l~~~~~~~~~~a~~~L~~ils 122 (1412)
||..+.+.+.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999998753
No 72
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=47.33 E-value=2e+02 Score=39.00 Aligned_cols=108 Identities=28% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCceEeeeeecCccchhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCCccceecCCCCchHHHhhhhcc
Q 000578 1076 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1155 (1412)
Q Consensus 1076 sdG~~y~~L~K~G~dDLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~~GLIE~v~~t~sL~~il~~~~~ 1155 (1412)
++|++ .+.|| .+++-|+...+++..+|.-... ..+++++|+.-+ +-|-.|||+.. |..
T Consensus 111 ~~g~k--ivYKP--r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~~-~ygw~EfI~~~-~c~-------- 168 (825)
T cd04792 111 SSGLK--LVYKP--RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDRG-DYGWEEFIEHQ-PCQ-------- 168 (825)
T ss_pred CCCCE--EEECC--CCchHHHHHHHHHHHHHhcCCc--------cccccceeeecC-CcceEEeecCC-CCC--------
Confidence 45653 57886 6999999999999999875432 234788888654 46999999751 110
Q ss_pred CCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhhhhHHHhhhcc
Q 000578 1156 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1235 (1412)
Q Consensus 1156 ~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~S~vgyilGL 1235 (1412)
+ +.+ -.+|=+-++.+-.+.|+||-
T Consensus 169 -----------------------~---~~e------------------------------~~~fY~r~G~llal~y~L~~ 192 (825)
T cd04792 169 -----------------------S---KEE------------------------------VERYYYRLGGLLALLYLLNA 192 (825)
T ss_pred -----------------------C---HHH------------------------------HHHHHHHHHHHHHHHHHcCC
Confidence 0 000 01344567888889999999
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhcc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1263 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~~ 1263 (1412)
.|=|-+||.-+ -+..|-||+--+|..
T Consensus 193 tD~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 193 TDLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred cccchhhheee--CCCceEEeeHHhcCC
Confidence 99999999554 467788888766654
No 73
>PLN03077 Protein ECB2; Provisional
Probab=47.01 E-value=9.1e+02 Score=32.85 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHhhcCCCccccccccc------cchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCC
Q 000578 380 PRHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 453 (1412)
Q Consensus 380 ~~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p 453 (1412)
......|+..|...++.|.+..+... .+....|.-|-+.|++++|+..|+.-.+.+ ..|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~~P 387 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN---------------VSP 387 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------CCC
Confidence 34567788888888888887777531 245678899999999999999998765543 225
Q ss_pred CcCCCCCcchhhhhccchhhHHHHHHHhhchhhHH
Q 000578 454 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 488 (1412)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L 488 (1412)
+ ...+..++.++-..|..+..
T Consensus 388 d--------------~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 388 D--------------EITIASVLSACACLGDLDVG 408 (857)
T ss_pred C--------------ceeHHHHHHHHhccchHHHH
Confidence 4 12356788888888865554
No 74
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=46.51 E-value=14 Score=43.65 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhccc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1264 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~~g 1264 (1412)
-|-+|+||||+. +|.+=-+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 577999999997 9999999999876544
No 75
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=46.11 E-value=1.5e+02 Score=28.51 Aligned_cols=83 Identities=19% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHH
Q 000578 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1412)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~l 761 (1412)
.+...+....+.|++..|...+.++....+. . +....+.+..+.++...|+...|+..++.++...+.....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--S---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--c---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 4456677788889999999988776543211 1 1112346788999999999999999999888765544333444
Q ss_pred HHHHhHhH
Q 000578 762 YRLVGKWL 769 (1412)
Q Consensus 762 l~llg~Wl 769 (1412)
+..+|.-.
T Consensus 79 ~~~~~~~~ 86 (119)
T TIGR02795 79 LLKLGMSL 86 (119)
T ss_pred HHHHHHHH
Confidence 44444433
No 76
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.17 E-value=51 Score=26.87 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.8
Q ss_pred hHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHh
Q 000578 725 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVG 766 (1412)
Q Consensus 725 ~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ll~llg 766 (1412)
.+..|++++..|+.+.|+.+++.+++..+.+ +++...+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhh
Confidence 4677999999999999999999998875533 44444443
No 77
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.87 E-value=33 Score=30.14 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=40.7
Q ss_pred hhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhhhccc
Q 000578 417 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 496 (1412)
Q Consensus 417 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~gl~ 496 (1412)
..|+|++|+..|+..++.. |+ +.....++.+|+...|.++.....++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-----------------PD-------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-----------------TT-------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5799999999999999975 33 23356789999999999988877777665
Q ss_pred cc
Q 000578 497 SW 498 (1412)
Q Consensus 497 ~~ 498 (1412)
..
T Consensus 53 ~~ 54 (68)
T PF14559_consen 53 KQ 54 (68)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 78
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=44.21 E-value=17 Score=39.70 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.0
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhhccc
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1264 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f~~g 1264 (1412)
=||=+|+||+++. +|++.=||||.++..+
T Consensus 148 H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 148 HGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred cCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 3688999999996 9999999999986644
No 79
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=43.62 E-value=15 Score=46.68 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHHHHHHHHhcCcccccccceeecceEEE--cCCCCccceecCCCCchHHH
Q 000578 1091 DLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP--FTPSAGILEWVDGTVPLGDY 1149 (1412)
Q Consensus 1091 DLRqD~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViP--Ls~~~GLIE~v~~t~sL~~i 1149 (1412)
|+|+++.-+.-|+ ..++.+ -.++.|+|.+ .+++.=.+||++| +++.++
T Consensus 207 Dy~~EA~n~~~~~---~nf~~~-------~~v~VP~V~we~t~~~VLtmE~i~G-i~i~d~ 256 (517)
T COG0661 207 DYRREAANAERFR---ENFKDD-------PDVYVPKVYWEYTTRRVLTMEWIDG-IKISDI 256 (517)
T ss_pred CHHHHHHHHHHHH---HHcCCC-------CCeEeceeehhccCCcEEEEEeeCC-EecccH
Confidence 6777777766554 333333 3688999996 4888889999998 555554
No 80
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=42.74 E-value=19 Score=41.36 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCCCCeEEEecCCCcEEEEecchh------hcccc-CCCCCCCCccccccccc--------ccccccccc---chhH
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVA------FEQGL-MLKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1295 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~------f~~g~-~l~~pE~VPFRLTrniv--------~~mG~~g~e---G~Fr 1295 (1412)
-|--|+|||+|+ +|.|=-.|||+| +.+.. .--.|=..|=|++|+=- =-+|++-+| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 577899999997 999999999998 22221 11346777889988743 235666655 7664
No 81
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=42.50 E-value=56 Score=32.90 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHh--hhhcCChHHHHHhhhhhhcc
Q 000578 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLA--ESRSSNSRIILENYLKPAVS 790 (1412)
Q Consensus 727 E~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ll~llg~Wla--etr~e~p~~I~~~Yl~~a~~ 790 (1412)
|.|+-+|++|+|..|+.++++++...........++.+-|.=.. ....++| ++-..|+..+++
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~-d~k~~yLl~sve 65 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENP-DVKFRYLLGSVE 65 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCc-hHHHHHHHHhHH
Confidence 46899999999999999999998765544333334333333221 1223344 334456655543
No 82
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=42.00 E-value=34 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=19.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHhh
Q 000578 410 SQIVTLEHEGNWSKALEYYELQVR 433 (1412)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1412)
..-..|...|+|++|..+|+..+.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345689999999999999999664
No 83
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=41.99 E-value=14 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred CCCCCCeEEEecCCC----cEEEEecchh
Q 000578 1236 GDRHAMNILIDQATA----EVVHIDLGVA 1260 (1412)
Q Consensus 1236 GDRH~~NILld~~tG----~vvhIDfg~~ 1260 (1412)
+|=||+||+++. .| +++-+|||++
T Consensus 284 aDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 284 ADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred CCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 899999999986 55 9999999986
No 84
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=41.92 E-value=18 Score=38.80 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=22.9
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhhc
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAFE 1262 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f~ 1262 (1412)
=||=||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999998744
No 85
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.48 E-value=17 Score=41.42 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred CCCCCCeEEEecCCCcEEEEecch
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGV 1259 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~ 1259 (1412)
||=||+||+++. .| ++-||||.
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~ 180 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSG 180 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCC
Confidence 799999999986 67 99999984
No 86
>smart00090 RIO RIO-like kinase.
Probab=39.73 E-value=21 Score=40.68 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.9
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhccc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1264 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~~g 1264 (1412)
||=+|+||+++ +|++.=||||.+...+
T Consensus 173 ~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 173 GDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred CCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 79999999999 8999999999877544
No 87
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=37.98 E-value=46 Score=36.90 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCC--------CccceecCCCCchHHHhhh
Q 000578 1096 AVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPS--------AGILEWVDGTVPLGDYLIG 1152 (1412)
Q Consensus 1096 ~r~~Qlf~liN~lL~~~~etr~r~L~i~tY~ViPLs~~--------~GLIE~v~~t~sL~~il~~ 1152 (1412)
.+..+=++.++.+.+ ..|.|+.+|-.... .=+.|.++++.+|.+++..
T Consensus 56 ~ra~~E~~~~~~L~~---------~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~ 111 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE---------AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ 111 (206)
T ss_pred hHHHHHHHHHHHHHH---------cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence 345555565555553 56778888777655 1256899999999988753
No 88
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=37.89 E-value=21 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCCCCeEEEecCCCcEEEEecchh
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
||=||+||+++. +|+++-+|||.+
T Consensus 281 ~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECC-CCcEEEEeCCCe
Confidence 799999999975 899999999976
No 89
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.15 E-value=1.9e+02 Score=28.95 Aligned_cols=67 Identities=18% Similarity=-0.029 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
....|...+....+.|++..|...+.++..+.+ .+....+..|..++..|+...|+..++..++..+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------DDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 345667778888889999999988877654421 1233457789999999999999999987776543
No 90
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=37.13 E-value=22 Score=38.93 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHhhhccCCCCCCeEEEecCCCcEEEEecchh
Q 000578 1229 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
...++.=||=||+|||++...|+|--|||+.+
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccc
Confidence 56677789999999999976788879999865
No 91
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=35.91 E-value=1.7e+02 Score=32.57 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.3
Q ss_pred CCCCCCeEEEecCCCcE--EEEecchhhcc
Q 000578 1236 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1263 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~v--vhIDfg~~f~~ 1263 (1412)
||-..+||++....+.+ +-||||..+.+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999988 99999987754
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=33.72 E-value=2.5e+02 Score=24.27 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000578 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1412)
Q Consensus 683 wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~ 752 (1412)
|...+......|++..|...+.++....+ ....+.+..|..++..|+...|+..++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45567777888999999988877644321 122345778999999999999999988776543
No 93
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=33.32 E-value=15 Score=40.33 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=20.8
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhhccc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1264 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f~~g 1264 (1412)
||=++.|||++. |+++-||||-+++..
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC
Confidence 899999999985 599999999877754
No 94
>PRK12274 serine/threonine protein kinase; Provisional
Probab=33.22 E-value=32 Score=38.72 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCC-CCCeEEEecCCCcEEEEecchhh
Q 000578 1236 GDR-HAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1236 GDR-H~~NILld~~tG~vvhIDfg~~f 1261 (1412)
+|- .|+|||++. .|.+.-||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 787 589999985 8999999999874
No 95
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=32.55 E-value=31 Score=44.00 Aligned_cols=45 Identities=27% Similarity=0.213 Sum_probs=32.7
Q ss_pred hccCCCCCCeEEEecCCCcEEEEecchhhccccCCCCCCCCccccccccc
Q 000578 1233 VGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDII 1282 (1412)
Q Consensus 1233 lGLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv 1282 (1412)
.=.+|-||+|||++..-|.+--+|||.+-+.-..+..| ++|.+.+
T Consensus 436 vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp-----~~t~~y~ 480 (612)
T KOG0603|consen 436 VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP-----ALTLQYV 480 (612)
T ss_pred eeecCCChhheeecCCCCcEEEEEechhhhCchhhccc-----chhhccc
Confidence 34689999999997678999999999876543222223 6666655
No 96
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=32.27 E-value=32 Score=39.23 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.2
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
=+|=+|+|||++. +|++.-||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 3699999999996 7899999999653
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=30.86 E-value=1.3e+02 Score=27.23 Aligned_cols=70 Identities=11% Similarity=-0.132 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHH
Q 000578 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1412)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~ 749 (1412)
+...+...|...+..|+++.|...+.++..+... .+...+....+....|.++-.+|+...|+..++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677789999999999999887766655211 111122223445678889999999999999886543
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=30.64 E-value=3.4e+02 Score=29.93 Aligned_cols=82 Identities=20% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhH
Q 000578 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1412)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ 760 (1412)
+.+-+.|..+=..|++..|...+..+...-+. ++....+.+..|......|+...|+...+.++++.+.++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 34455677788899999999998887643221 1122245789999999999999999999999999888877777
Q ss_pred HHHHHhH
Q 000578 761 VYRLVGK 767 (1412)
Q Consensus 761 ll~llg~ 767 (1412)
++.++|.
T Consensus 81 A~Y~~g~ 87 (203)
T PF13525_consen 81 ALYMLGL 87 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 99
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=30.23 E-value=1.8e+03 Score=31.35 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhH
Q 000578 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1412)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ 760 (1412)
..+...+..+...|++..|...+.++..+.+. +..+.+..|.+++.+|+...|+..++.+++..+ ..++
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~~~~ 530 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG--------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---NDPE 530 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHH
Confidence 34567788999999999999998887665322 223467899999999999999999998876443 2344
Q ss_pred HHHHHhHhHh
Q 000578 761 VYRLVGKWLA 770 (1412)
Q Consensus 761 ll~llg~Wla 770 (1412)
.+..+|-.+.
T Consensus 531 ~~~a~al~l~ 540 (1157)
T PRK11447 531 QVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHH
Confidence 4444454443
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.20 E-value=5.8e+02 Score=34.05 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHhHhhHhhcccCCCCCcccccccccCCCCCCCc
Q 000578 225 VVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPR 304 (1412)
Q Consensus 225 ~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~s~~~~~~iq~~l~~l~~LR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~ 304 (1412)
..-.++.+....++..+.+-.+.++ +...+..--.....+-..++|.| .||...+ .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~------------- 88 (694)
T PRK15179 33 LLEAALAEPGESEEAGRELLQQARQ-VLERHAAVHKPAAALPELLDYVR---------RYPHTEL-F------------- 88 (694)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHH-HHHHhhhhcchHhhHHHHHHHHH---------hccccHH-H-------------
Q ss_pred cchhhhhhhhhhcccccccccccccccccCHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHH
Q 000578 305 STSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIE 384 (1412)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~t~~d~~~wL~Id~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e 384 (1412)
+..+|.+++++|-|.-|+..+|..++-. |++..
T Consensus 89 ------------------------------~~~La~i~~~~g~~~ea~~~l~~~~~~~-----------------Pd~~~ 121 (694)
T PRK15179 89 ------------------------------QVLVARALEAAHRSDEGLAVWRGIHQRF-----------------PDSSE 121 (694)
T ss_pred ------------------------------HHHHHHHHHHcCCcHHHHHHHHHHHhhC-----------------CCcHH
Q ss_pred HHHHHHhhcCCCccccccccccchhhHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 000578 385 ILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSEN 464 (1412)
Q Consensus 385 ~L~~Iy~~IdePD~~yGi~~~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~ 464 (1412)
..+.- ...+-++++.++|+..++..++.+ |+
T Consensus 122 a~~~~----------------------a~~L~~~~~~eeA~~~~~~~l~~~-----------------p~---------- 152 (694)
T PRK15179 122 AFILM----------------------LRGVKRQQGIEAGRAEIELYFSGG-----------------SS---------- 152 (694)
T ss_pred HHHHH----------------------HHHHHHhccHHHHHHHHHHHhhcC-----------------CC----------
Q ss_pred hhhccchhhHHHHHHHhhchhhHHHHhhhcc
Q 000578 465 EMMQRKPYKGLMRSLQQVGCMHVLDMYCKGL 495 (1412)
Q Consensus 465 ~~~~~~~~~Gl~r~L~~lG~~~~L~~~~~gl 495 (1412)
+...+.-+-.||+++|.+.....+-+.+
T Consensus 153 ---~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 153 ---SAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred ---CHHHHHHHHHHHHHhcchHHHHHHHHHH
No 101
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=30.12 E-value=37 Score=39.66 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=28.1
Q ss_pred HHhhhccCCCCCCeEEEecC---CCcEEEEecchh
Q 000578 1229 VGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1260 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~---tG~vvhIDfg~~ 1260 (1412)
...++-=||=|++|||++.. +|.+.-|||.++
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 56788889999999999964 589999999876
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=30.08 E-value=1e+02 Score=27.11 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=35.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhc-hhhH
Q 000578 410 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 487 (1412)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG-~~~~ 487 (1412)
..-..|...|+|.+|+.+|+..++.+ |+ +...+.++-.|+..+| .+..
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~-----------------p~-------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELD-----------------PN-------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHS-----------------TT-------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHhCccHHH
Confidence 44567888999999999999999975 33 2335677777888887 4443
No 103
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=29.09 E-value=45 Score=33.30 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
||=+|+|||++. +|.+.-+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999996 8999999999764
No 104
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.83 E-value=47 Score=36.68 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.8
Q ss_pred ccceeecceEEEcCCCCcc--ceecCCCCchHHHhh
Q 000578 1118 RRLGVRTYKVVPFTPSAGI--LEWVDGTVPLGDYLI 1151 (1412)
Q Consensus 1118 r~L~i~tY~ViPLs~~~GL--IE~v~~t~sL~~il~ 1151 (1412)
+.+.+.+|.|.-.-|..|+ +|||++. .|.+++.
T Consensus 57 ~~~GV~~P~v~dvD~~~~~I~me~I~G~-~lkd~l~ 91 (204)
T COG3642 57 REAGVPVPIVYDVDPDNGLIVMEYIEGE-LLKDALE 91 (204)
T ss_pred HHcCCCCCeEEEEcCCCCEEEEEEeCCh-hHHHHHH
Confidence 3578999999999999975 5899874 4666654
No 105
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=27.63 E-value=52 Score=37.98 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCccccccccc--------
Q 000578 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------- 405 (1412)
Q Consensus 334 d~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-------- 405 (1412)
++..++.. ..=+-|.+|+-++|..+++. ..+.....++.+|.+.++.+.+..+...
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 34445555 46677888888887654321 1123344455667777776666555431
Q ss_pred c---chhhHHHHHHhhCCHHHHHHHHHHHhhccc
Q 000578 406 H---KLSSQIVTLEHEGNWSKALEYYELQVRSDV 436 (1412)
Q Consensus 406 ~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 436 (1412)
. .+-.....|++.|++++|+.+|+..++..|
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 123445788999999999999999999753
No 106
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=26.77 E-value=47 Score=36.26 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHhhhccCCCCCCeEEEecC-CCcEEEEecchh
Q 000578 1229 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1260 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~-tG~vvhIDfg~~ 1260 (1412)
.-.++-=||=||+||+++.. +|.+.-|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 34566669999999999975 455678999865
No 107
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=26.64 E-value=1.2e+02 Score=26.41 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHh
Q 000578 412 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 491 (1412)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~ 491 (1412)
...|-..|++++|+..|+..++.. |. +.+...++-+|+...|.+.....+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-----------------P~-------------~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-----------------PD-------------NPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-----------------TT-------------HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456788999999999999999964 33 334677888899888876655433
No 108
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=26.50 E-value=3.9e+02 Score=28.38 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCchhhHhhhhhhhhhhhhccccCCCCCCCcCCCcccHHHHHHHHHhhcCCCccccccccc-----c---
Q 000578 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 406 (1412)
Q Consensus 335 ~l~lA~AA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~--- 406 (1412)
+..+|.....-+-|..|+-+++...... |. .......+-.+|...+++|........ +
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--------PD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 4567888888899999999988755321 11 122334455666666766665444320 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHhh
Q 000578 407 -KLSSQIVTLEHEGNWSKALEYYELQVR 433 (1412)
Q Consensus 407 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1412)
.......-|...|++++|+.+|+..++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 011223456667777777777777665
No 109
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=26.19 E-value=85 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHH
Q 000578 87 SEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGI 120 (1412)
Q Consensus 87 ~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~i 120 (1412)
....+..++..|...|.|++..|+..|..||-+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999998764
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=26.11 E-value=3.5e+02 Score=25.85 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCC
Q 000578 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1412)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~ 755 (1412)
.+...+....+.|+++.|...+..+....+. .... ..+.+-.|..+...|+...|+..++.+++..+.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 3455688899999999999998877654321 1111 1235677889999999999999999888765543
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.32 E-value=4.5e+02 Score=30.08 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchh
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1412)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a 759 (1412)
...+-..|..+-+.|++..|...+.++....+. ++....+.++.|...-.+|+...|+...+.+++..+.++..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 444556788888999999999998887654322 122223458889999999999999999999999988888888
Q ss_pred HHHHHHh
Q 000578 760 DVYRLVG 766 (1412)
Q Consensus 760 ~ll~llg 766 (1412)
.++.++|
T Consensus 107 ~a~Y~~g 113 (243)
T PRK10866 107 YVLYMRG 113 (243)
T ss_pred HHHHHHH
Confidence 8887776
No 112
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=25.29 E-value=1.8e+02 Score=36.67 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 722 WLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 722 ~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
..++...|..+|+.|+.+.||.+.+++++.++
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 45678899999999999999999999998654
No 113
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=25.23 E-value=56 Score=37.07 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.3
Q ss_pred CCCCCCeEEEecCCCcEEEEecc
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLG 1258 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg 1258 (1412)
||=||+|++++ .|.+.-|||+
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~ 179 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQ 179 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECc
Confidence 99999999998 5779999997
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.11 E-value=4.5e+02 Score=29.13 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchh
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1412)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a 759 (1412)
...+...+..+.+.|+++.|...+.++....+. .+....+.+..|..+-.+|+...|+..++.++...+.+....
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 445566778888899999999988776554321 111122457789999999999999999999988776555444
Q ss_pred HHHHHHhH
Q 000578 760 DVYRLVGK 767 (1412)
Q Consensus 760 ~ll~llg~ 767 (1412)
.++..+|.
T Consensus 108 ~a~~~~g~ 115 (235)
T TIGR03302 108 YAYYLRGL 115 (235)
T ss_pred HHHHHHHH
Confidence 44444443
No 115
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.10 E-value=1.1e+03 Score=32.87 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHhhccCcch
Q 000578 894 LGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSR 929 (1412)
Q Consensus 894 l~~al~~y~~~l~~~~~~~~~~~~R~~sLW~~~~~~ 929 (1412)
|.+.|.+|+..=..+......+.-+.|.||+.....
T Consensus 1476 Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpe 1511 (1758)
T KOG0994|consen 1476 LIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPE 1511 (1758)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHH
Confidence 446667776544444444445668999999998754
No 116
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.07 E-value=4.6e+02 Score=30.48 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=57.8
Q ss_pred HHHHHHH-HHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhH
Q 000578 682 HLLESAS-TLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1412)
Q Consensus 682 ~wl~~A~-laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ 760 (1412)
.+...|- +..+.|++..|..++..+...-+. +...+ .+.+-.+++++.+|+...|+...+.++++.+.+...++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3444444 335678999998887766543222 11111 35678899999999999999999999998887777788
Q ss_pred HHHHHhH
Q 000578 761 VYRLVGK 767 (1412)
Q Consensus 761 ll~llg~ 767 (1412)
++..+|.
T Consensus 219 Al~klg~ 225 (263)
T PRK10803 219 AMFKVGV 225 (263)
T ss_pred HHHHHHH
Confidence 8776655
No 117
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=23.49 E-value=98 Score=34.91 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=59.6
Q ss_pred hhhhhhHHHhhhccCCCCCCeEEE-ecCCCcEEEEecchhhccccCCCCCCCCccccccccccccccccccchhHHHHHH
Q 000578 1222 SVAASSMVGYIVGLGDRHAMNILI-DQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEK 1300 (1412)
Q Consensus 1222 S~A~~S~vgyilGLGDRH~~NILl-d~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~ 1300 (1412)
.+.=++|+=|++|=+|||-.|+.= .-..|-++|+|=|-.||.-..-+.+-..| .--=-.||++-..
T Consensus 91 dliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIlaP-------------L~QcC~iRrST~~ 157 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSILAP-------------LYQCCRIRRSTWE 157 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchhcc-------------HHHhhhccccHHH
Confidence 555678899999999999988653 12336699999998886432111111122 1112467777777
Q ss_pred HHHHHhcChHHHHHHHH-HHccCCCc
Q 000578 1301 TLSVMRTNKEALLTIVE-VFIHDPLY 1325 (1412)
Q Consensus 1301 t~~~LR~~~~~l~~iL~-~f~~DpL~ 1325 (1412)
.++.|.+....|..+|. .+.+||+.
T Consensus 158 rL~~l~~~~~~Ls~~m~~s~~~D~l~ 183 (221)
T PF06702_consen 158 RLQLLSKGGYRLSDLMRESLSRDPLA 183 (221)
T ss_pred HHHHhccCCCcHHHHHHHHhccCccC
Confidence 88888877777777766 44677654
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.11 E-value=5.1e+02 Score=26.86 Aligned_cols=67 Identities=10% Similarity=-0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000578 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1412)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l~~~~~ 753 (1412)
....|...+.++-..|++..|.....++..+.+ .+..+.+-.+..+-..|+...|+..++..+...+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777788889999999999988877665532 2233456778889999999999998877666444
No 119
>PRK05685 fliS flagellar protein FliS; Validated
Probab=22.85 E-value=5.3e+02 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000578 547 NLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1412)
Q Consensus 547 ~l~~aL~Al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~E-------S~~~~Y~~lvr 595 (1412)
.+..+..|+.+||++.+...|.+++.-+.+-.++.-.| ....+|.++.+
T Consensus 38 ~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 38 FLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 34456778899999999999999987664433333322 34556666555
No 120
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=22.13 E-value=68 Score=36.10 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred HhhhccCCCCCCeEEEecCCCcE-EEEecchh
Q 000578 1230 GYIVGLGDRHAMNILIDQATAEV-VHIDLGVA 1260 (1412)
Q Consensus 1230 gyilGLGDRH~~NILld~~tG~v-vhIDfg~~ 1260 (1412)
.+.|-=||=|++|||++ .|++ --|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~--~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQ--DGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEE--CCCEEEEEeCccc
Confidence 34455599999999998 3666 48999975
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=21.94 E-value=3.2e+02 Score=27.89 Aligned_cols=62 Identities=29% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHH
Q 000578 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLA 745 (1412)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~L 745 (1412)
....+++.++..|.-|+...|.+.|.+... ...... .....+.-.|-.|+..|++..|+..+
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~---~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDE---LNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcc---ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356788999999999999999999977532 111111 12233455788999999999999976
No 122
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=21.75 E-value=1.1e+02 Score=39.19 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1235 LGDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1235 LGDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
=||-+|+|||+ .+|.+.=||||.+-
T Consensus 451 HrDlkp~NILl--~~~~~~liDFGla~ 475 (535)
T PRK09605 451 HGDLTTSNFIV--RDDRLYLIDFGLGK 475 (535)
T ss_pred cCCCChHHEEE--ECCcEEEEeCcccc
Confidence 47999999999 47999999999763
No 123
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=21.57 E-value=79 Score=35.21 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=23.0
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
+|=.|+||+++ .+|++.-+|||.+.
T Consensus 122 ~dikp~NIl~~-~~~~~~l~Dfg~~~ 146 (260)
T PF00069_consen 122 RDIKPENILLD-ENGEVKLIDFGSSV 146 (260)
T ss_dssp SSBSGGGEEES-TTSEEEESSGTTTE
T ss_pred ccccccccccc-cccccccccccccc
Confidence 78899999999 69999999999985
No 124
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=21.11 E-value=48 Score=39.79 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1236 GDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1236 GDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
.|--|+|||||. .|.|.-.|||.|=
T Consensus 149 RDlKPENILLd~-~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 149 RDLKPENILLDE-QGHIKLTDFGLCK 173 (357)
T ss_pred ccCCHHHeeecC-CCcEEEeccccch
Confidence 488899999995 9999999999884
No 125
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.98 E-value=5.8e+02 Score=25.85 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000578 547 NLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1412)
Q Consensus 547 ~l~~aL~Al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~E-------S~~~~Y~~lvr 595 (1412)
.+..+..++..||++.+...+.+++.-+..-.+..-.| +..++|..+.+
T Consensus 32 ~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~ 87 (122)
T PF02561_consen 32 FLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIR 87 (122)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHH
Confidence 44467778889999999999999998665433444444 34455666554
No 126
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=20.84 E-value=67 Score=36.28 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.3
Q ss_pred ccCCCCCCeEEEecCCCcEEEEecchh
Q 000578 1234 GLGDRHAMNILIDQATAEVVHIDLGVA 1260 (1412)
Q Consensus 1234 GLGDRH~~NILld~~tG~vvhIDfg~~ 1260 (1412)
-=||=||.||+++. +| +.-|||+.+
T Consensus 156 ~HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 156 LHGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred EecCCCCCcEEEcC-CC-cEEEechhc
Confidence 36999999999985 56 999999975
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.82 E-value=2.1e+02 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcccccccCCCCCCCCCCCCCCcCCCCCcchhhhhccchhhHHHHHHHhhchhhHHHHhh
Q 000578 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1412)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Gl~r~L~~lG~~~~L~~~~ 492 (1412)
..|-+.++|++|+.+++..+..+| + +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-----------------~-------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-----------------D-------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-----------------c-------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 357889999999999999999753 3 1224556677888888776654444
Q ss_pred hc
Q 000578 493 KG 494 (1412)
Q Consensus 493 ~g 494 (1412)
+.
T Consensus 53 ~~ 54 (73)
T PF13371_consen 53 ER 54 (73)
T ss_pred HH
Confidence 43
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.61 E-value=2.3e+02 Score=29.24 Aligned_cols=62 Identities=26% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCCchhhhhhHHHHHHHHHCCChHHHHHHHHHH
Q 000578 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1412)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lq~l 748 (1412)
..+..|+.+-..|.+..|...+..+..-. ..+.....+++-.|+++..+|+...|+.+|+.+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34566888899999999999998865421 111122346788899999999999999999664
No 129
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=20.52 E-value=97 Score=23.04 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhccc
Q 000578 412 IVTLEHEGNWSKALEYYELQVRSDV 436 (1412)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~ 436 (1412)
-..|.+.|++.+|..+|+..++..|
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999998653
No 130
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=20.51 E-value=4.9e+02 Score=30.13 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 000578 882 EAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVV 916 (1412)
Q Consensus 882 e~~~l~~~~~~fl~~al~~y~~~l~~~~~~~~~~~ 916 (1412)
.++.++..|-.|+...+..|.++|...+......+
T Consensus 215 ~~Q~lEe~Ri~~lk~~l~~y~~~l~~~~~~~~~~~ 249 (258)
T cd07655 215 KCQEFEEKRLDFFKEILLSYHRHLDLSTNPSFKAI 249 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 45677889999999999999999988877655444
No 131
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=20.31 E-value=1.2e+02 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHhhhccCCCCCCeEEEecCCCcEEEEecchhh
Q 000578 1229 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1261 (1412)
Q Consensus 1229 vgyilGLGDRH~~NILld~~tG~vvhIDfg~~f 1261 (1412)
...++.=||=|++|||++..+|.+.-|||-++-
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~ 200 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG 200 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence 345677799999999999656889999998653
No 132
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.13 E-value=1.8e+02 Score=24.45 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.1
Q ss_pred hHHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHH
Q 000578 725 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 764 (1412)
Q Consensus 725 ~iE~AklLWaqGe~~~AI~~Lq~l~~~~~~~~~~a~ll~l 764 (1412)
+++.|+.+-+.|+.+.|..+|+.++...+ ..+..++..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~-~~q~~eA~~L 40 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD-EAQRQEARAL 40 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 57889999999999999999999986432 2344444333
Done!