Query 000578
Match_columns 1412
No_of_seqs 327 out of 1454
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 15:52:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000578.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_352-355//hhsearch_pdb/000578hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 1.0 1 1 504.8 27.0 287 1032-1411 397-693 (696)
2 1e7u_A Phosphatidylinositol 3- 1.0 1 1 487.1 24.5 250 1033-1329 641-903 (961)
3 2y3a_A Phosphatidylinositol-4, 1.0 1 1 481.9 27.5 250 1033-1329 779-1039(1092)
4 3ls8_A Phosphatidylinositol 3- 1.0 1 1 479.8 23.9 273 1032-1397 324-603 (614)
5 2wxf_A Phosphatidylinositol-4, 1.0 1 1 478.1 32.0 251 1033-1330 626-888 (940)
6 3hhm_A Phosphatidylinositol-4, 1.0 1 1 460.9 28.3 249 1033-1329 773-1038(1091)
7 1w1n_A Phosphatidylinositol 3- 1.0 1 1 90.6 1.7 33 1380-1412 1-33 (33)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 26.3 27.5 63 681-751 296-358 (450)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 25.3 25.7 28 408-435 203-230 (597)
10 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 24.6 23.1 64 680-751 203-266 (388)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=1.00 E-value=1 Score=504.82 Aligned_cols=287 Identities=23% Similarity=0.415 Sum_probs=245.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCCEEEEEEECC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45444689986566899763233578-28983387861599999079-96686554418631036799999999999998
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~~Pk~i~~~gsd-G~~y~~L~K~G~dDlRqD~ri~Qlf~~iN~lL 1109 (1412)
..+.+|.+|. ++|.+|.+ .+.|++|+++|++|+|+|+| |+.|.||+|+| ||+|||+|++|+|++||.+|
T Consensus 397 ~~~~lP~~p~--------v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~g-DDLRQD~rv~Ql~~lmn~il 467 (696)
T 2x6h_A 397 EPIPFPLDPE--------IYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHG-DDLRQDQLILQMITLMDKLL 467 (696)
T ss_dssp CCEECSSCTT--------SEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECS-SCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--------EEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 8756799987--------69999943717983304697489999637887045787437-65421689999999999999
Q ss_pred HCCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 50812225541111012887289986200028987568875220038998887788861067887620043768999999
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
++++ |+|.+++|+|||+++++||||||+ +.|+++|+...
T Consensus 468 ~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~tl~~i~~~~------------------------------------ 506 (696)
T 2x6h_A 468 RREN----LDLKLTPYKVLATSSKHGFLQYVD-SCTVAEVLARE------------------------------------ 506 (696)
T ss_dssp HHTT----CCCCCCCCCEEESSTTCEEEECCC-CEEHHHHHHHS------------------------------------
T ss_pred HHCC----CCCEEECCEEEECCCCCCEEEECC-CCCHHHHHHHC------------------------------------
T ss_conf 8479----983775307996367787234579-75599998706------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCCC
Q ss_conf 985222238999999808955899----9999989853445688765235788997078844899189975101000146
Q 000578 1190 VCENFRPVLHYFFLERFLQPAYWF----EKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1265 (1412)
Q Consensus 1190 i~~~~~pvl~~~f~~~f~~p~~w~----~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g~ 1265 (1412)
..+++||.+.|+++..|| ++|.+|++|+|++||+||||||||||++||||| .||+++|||||++|+++
T Consensus 507 ------~~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~- 578 (696)
T 2x6h_A 507 ------GNIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT-TNGKLFHIDFGYILGRD- 578 (696)
T ss_dssp ------SSHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-TTSCEEECCCCSCTTCC-
T ss_pred ------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCEEEEEEHHHHCCC-
T ss_conf ------7099999987889620124279999999999999999999834888997656880-78998988534553668-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 8989988961026221021353343101--28889999999710949999999997128886433580579854210232
Q 000578 1266 MLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDD 1343 (1412)
Q Consensus 1266 ~l~~pE~VPFRLT~niv~~mG~~g~eG~--F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~k~~~~~~~~~~ 1343 (1412)
+.||+|||||||||+++||+.|+||. |+.+|+.++.+||++++.|++++++|++|++.+|...+.
T Consensus 579 --p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~----------- 645 (696)
T 2x6h_A 579 --PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPD----------- 645 (696)
T ss_dssp --SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG-----------
T ss_pred --CCCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHH-----------
T ss_conf --8776798631799999838977610899999999999999867899999999997589975466878-----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHH--HHHHHCCCCCCC
Q ss_conf 21279999920002433479999999841068889985588999999999901902--256216343157
Q 000578 1344 DLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAW 1411 (1412)
Q Consensus 1344 ~~~~~~~~~~~~~~~n~~a~~~l~~v~~kL~g~~~~~~lsv~~qV~~LI~~Atd~~--nL~~m~~gW~Pw 1411 (1412)
.++..+++|+....+ ......+|..||+.|.+.- ++.-++..|..|
T Consensus 646 --------------------~~i~~l~~rf~l~ls--eeea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 646 --------------------KAVKKVEENLQLGLT--DEEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp --------------------GHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------999999998379999--999999999999999853448899999999999
No 2
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=1.00 E-value=1 Score=487.10 Aligned_cols=250 Identities=24% Similarity=0.371 Sum_probs=221.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCEEEEEEECCCC-----EEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 54446899865668997632335-782898338786159999907996-----686554418631036799999999999
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVN 1106 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG~-----~y~~L~K~G~dDlRqD~ri~Qlf~~iN 1106 (1412)
+..+|.+|. ..|.+| .+.+.|++|+++|++|+++|+||+ .|.+|+|+| ||+|||+|++|+|++||
T Consensus 641 ~~~lP~dP~--------v~i~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn 711 (961)
T 1e7u_A 641 SFRVPYDPG--------LKAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIME 711 (961)
T ss_dssp CEEETTEEE--------EEEEEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC--------EEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHH
T ss_conf 765799995--------489876334379850257956999972687756677523898458-54434364999999999
Q ss_pred HHHHCCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99850812225541111012887289986200028987568875220038998887788861067887620043768999
Q 000578 1107 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1186 (1412)
Q Consensus 1107 ~lL~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~~ 1186 (1412)
.+|+++ +|+|.+++|+|+|+++++||||||+|++|+++|+.... |....+
T Consensus 712 ~il~~~----~~~L~i~~Y~Vipls~~~GlIE~V~ns~tl~~I~~~~~---g~~~~f----------------------- 761 (961)
T 1e7u_A 712 SIWETE----SLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGAF----------------------- 761 (961)
T ss_dssp HHHHHT----TCCCCCCCCCEEEEETTEEEEECCSSEEEHHHHHHHHS---CSSSCC-----------------------
T ss_pred HHHHHC----CCCEEEEEEEEEECCCCCCEEEECCCCCCHHHHHHHCC---CCCCCC-----------------------
T ss_conf 998635----88828883049987788775776599746999998536---752224-----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCCCC
Q ss_conf 99998522223899999980895589999999898534456887652357889970788448991899751010001468
Q 000578 1187 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1266 (1412)
Q Consensus 1187 f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g~~ 1266 (1412)
-.+++++||.+.+++++.|+.+|.+|++|+|++||+||||||||||++|||||+ ||+++|||||++|++++.
T Consensus 762 -------~~~~L~~w~~~~~~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~ 833 (961)
T 1e7u_A 762 -------KDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKS 833 (961)
T ss_dssp -------CSSHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC------
T ss_pred -------CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCC
T ss_conf -------416899999985998689999999999988999899897005578876568835-777898853343246865
Q ss_pred -CC-CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -98-99889610262210213533431-----01288899999997109499999999971288864335
Q 000578 1267 -LK-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1329 (1412)
Q Consensus 1267 -l~-~pE~VPFRLT~niv~~mG~~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1329 (1412)
++ .||+|||||||||+++||+.|++ |.|+.+|+.++.+||++++.|++++++|++||+.+|..
T Consensus 834 ~l~~~pE~vPFRLT~~mv~~mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 834 FLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp ----CCCCCSSCCCHHHHHHTTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 5677888898424799999856567766452789999999999999975899999999984699976586
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=1.00 E-value=1 Score=481.90 Aligned_cols=250 Identities=24% Similarity=0.375 Sum_probs=216.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCEEEEEEECC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 544468998656689976323357-828983387861599999079--96686554418631036799999999999998
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1109 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~ri~Qlf~~iN~lL 1109 (1412)
...+|.+|. ..|.+|. +.+.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|++|+|++||.+|
T Consensus 779 ~~~lP~~P~--------v~I~~~~~~~~~V~~S~~~P~rL~~~gsD~~G~~y~~L~K~g-DDLRQD~rv~Ql~~lmn~ll 849 (1092)
T 2y3a_A 779 DLQSPLNPC--------VILSELYVEKCKYMDSKMKPLWLVYSSRAFGEDSVGVIFKNG-DDLRQDMLTLQMLRLMDLLW 849 (1092)
T ss_dssp SSCCSSCSS--------BCCCCCCGGGCEECSSTTCCEEEEEECTTTSSSEEEEEECCS-SCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC--------EEEEEEECCCEEEECCCCCCEEEEEEECCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 987899975--------478888447238803112856999993377886145798448-32112489999999999999
Q ss_pred HCCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 50812225541111012887289986200028987568875220038998887788861067887620043768999999
Q 000578 1110 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1189 (1412)
Q Consensus 1110 ~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1189 (1412)
+++ +|+|.+++|.|+|+++++||||||+|+.|+++|+... ++... .
T Consensus 850 ~~~----~~~L~i~~Y~Vipls~~~GLIE~V~ns~TL~~I~~~~---~~~~~---~------------------------ 895 (1092)
T 2y3a_A 850 KEA----GLDLRMLPYGCLATGDRSGLIEVVSTSETIADIQLNS---SNVAA---T------------------------ 895 (1092)
T ss_dssp HHH----SCCCCCCCCCEECCSSSCCEEECCTTCCBHHHHHSSS---CTTTT---T------------------------
T ss_pred HHC----CCCEEEECCEEEEECCCCCEEEECCCCCCHHHHHHHH---CCCHH---H------------------------
T ss_conf 848----9881886334898459888575579974599999863---56202---2------------------------
Q ss_pred HHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCCC-CC
Q ss_conf 98522-22389999998089558999999989853445688765235788997078844899189975101000146-89
Q 000578 1190 VCENF-RPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-ML 1267 (1412)
Q Consensus 1190 i~~~~-~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g~-~l 1267 (1412)
..+ .+++++||.+.+ .++.|+.+|.+|++|+|++||+||||||||||++|||||+ ||+++|||||++|+.++ .+
T Consensus 896 --~~f~~~~L~~~~~~~~-~~~~~~~ar~nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l 971 (1092)
T 2y3a_A 896 --AAFNKDALLNWLKEYN-SGDDLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKF 971 (1092)
T ss_dssp --SCSSTTHHHHHHHHHC-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGG
T ss_pred --HCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHHCCCCCC
T ss_conf --1048467999999769-8888999999999999999999998117789976378935-78789984233440377668
Q ss_pred C-CCCCCCCCCCCCCCCCCCCC--CCC---CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8-99889610262210213533--431---01288899999997109499999999971288864335
Q 000578 1268 K-TPERVPFRLTRDIIDGMGVT--GVE---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1329 (1412)
Q Consensus 1268 ~-~pE~VPFRLT~niv~~mG~~--g~e---G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1329 (1412)
. .||.|||||||||+++||+. |.+ |.|+.+|+.++++||++++.|+++|++|++||+.+|..
T Consensus 972 ~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 972 GIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp GCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88888898047799999970687777754225999999999999868899999999994799953353
No 4
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=1.00 E-value=1 Score=479.77 Aligned_cols=273 Identities=25% Similarity=0.437 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 45444689986566899763233578-28983387861599999079966865544186310367999999999999985
Q 000578 1032 VTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1110 (1412)
Q Consensus 1032 ~t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~ri~Qlf~~iN~lL~ 1110 (1412)
.+..+|.+|. ++|.+|.+ .+.|++|+++||+|+|+|+||+.|.+++|+| ||+|||++++|+|++||.+|+
T Consensus 324 ~~~~lPl~P~--------v~I~~i~p~~~~V~~Sk~~P~~l~~~gsDG~~y~~i~K~g-DDLRQD~~~~Ql~~l~n~il~ 394 (614)
T 3ls8_A 324 ELIPLPLEPQ--------VKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHG-DDLRQDQLILQIISLMDKLLR 394 (614)
T ss_dssp SSEEETTEEE--------EEEEEECGGGCEECSSTTCCEEEEEEETTSCEEEEEEEES-SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--------EEEEEEECCEEEEEECCCCEEEEEEECCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 8878999986--------6999996580688511468279999926998877887438-851398999999999999999
Q ss_pred CCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 08122255411110128872899862000289875688752200389988877888610678876200437689999999
Q 000578 1111 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1190 (1412)
Q Consensus 1111 ~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i 1190 (1412)
++. ++|+|++|+|||+++++|+||||++ .++.+++...
T Consensus 395 ~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~~------------------------------------- 432 (614)
T 3ls8_A 395 KEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDTE------------------------------------- 432 (614)
T ss_dssp HTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHHT-------------------------------------
T ss_pred HCC----CCCEEECCEEEEECCCCCEEEEECC-CCHHHHHHCC-------------------------------------
T ss_conf 669----9844541079994598765887178-6589998705-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCCCC
Q ss_conf 8522223899999980895589----999999898534456887652357889970788448991899751010001468
Q 000578 1191 CENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1266 (1412)
Q Consensus 1191 ~~~~~pvl~~~f~~~f~~p~~w----~~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g~~ 1266 (1412)
..+.+||.+.++++..| .++|.+|++|+|+|||+||||||||||++||||| .||++||||||++|+++
T Consensus 433 -----~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~-- 504 (614)
T 3ls8_A 433 -----GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRD-- 504 (614)
T ss_dssp -----SSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCC--
T ss_pred -----CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEC-CCCCEEEEEHHHHHCCC--
T ss_conf -----8699999985888666544559999999998777767510323468887666673-78988664117765358--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 98998896102622102135334310--1288899999997109499999999971288864335805798542102322
Q 000578 1267 LKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDD 1344 (1412)
Q Consensus 1267 l~~pE~VPFRLT~niv~~mG~~g~eG--~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~k~~~~~~~~~~~ 1344 (1412)
|.||+||||||+||+++||++|+|| .|+.+|+.++.+||++.+.|++++++|+.+++.+|...+.+
T Consensus 505 -p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~~~il~l~~lM~~s~lp~~~~~~~~----------- 572 (614)
T 3ls8_A 505 -PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDK----------- 572 (614)
T ss_dssp -SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTTSCCHHHHTSGGG-----------
T ss_pred -CCCCCCCEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHH-----------
T ss_conf -87788874348999998399887218899999999999998777899999999705999744557589-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 12799999200024334799999998410688899855889999999999019
Q 000578 1345 LETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAID 1397 (1412)
Q Consensus 1345 ~~~~~~~~~~~~~~n~~a~~~l~~v~~kL~g~~~~~~lsv~~qV~~LI~~Atd 1397 (1412)
++..+++++.-..+ .--....+..||+.+.+
T Consensus 573 --------------------~i~~l~~rf~l~ls--e~ea~~~~~~lI~~S~~ 603 (614)
T 3ls8_A 573 --------------------TVKKVQDKFRLDLS--DEEAVHYMQSLIDESVH 603 (614)
T ss_dssp --------------------HHHHHHHHTTTTSC--HHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf --------------------99999997389999--99999999999999885
No 5
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=1.00 E-value=1 Score=478.11 Aligned_cols=251 Identities=22% Similarity=0.345 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCEEEEEEECC---CCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 544468998656689976323357-828983387861599999079---9668655441863103679999999999999
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1108 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd---G~~y~~L~K~G~dDlRqD~ri~Qlf~~iN~l 1108 (1412)
...+|.+|. ..|.+|. +.+.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|++|+|++||.+
T Consensus 626 ~~~lP~~P~--------~~I~~~~~~~~~V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~i 696 (940)
T 2wxf_A 626 HLQSPLDPS--------TLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVL 696 (940)
T ss_dssp SEEETTEEE--------EEECEECGGGCEECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC--------EEEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf 987899986--------2577760671488331128749999834767786323798337-5433128999999999999
Q ss_pred HHCCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 85081222554111101288728998620002898756887522003899888778886106788762004376899999
Q 000578 1109 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1188 (1412)
Q Consensus 1109 L~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~ 1188 (1412)
|++++ |+|.+++|.|+|+++++||||||+|+.|+++++... ++... .
T Consensus 697 l~~~~----~~L~i~~Y~Vipls~~~GlIE~V~ns~tl~~I~~~~---~~~~~---~----------------------- 743 (940)
T 2wxf_A 697 WKQEG----LDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNK---SNMAA---T----------------------- 743 (940)
T ss_dssp HHHTT----CCCCCCCCCEEEEETTEEEEECCSSEEEHHHHHTCC---SSSTT---C-----------------------
T ss_pred HHHCC----CCEEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHH---CCCHH---H-----------------------
T ss_conf 98389----971899514998237788686779973699999861---66302---2-----------------------
Q ss_pred HHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCCC-C
Q ss_conf 998522-22389999998089558999999989853445688765235788997078844899189975101000146-8
Q 000578 1189 EVCENF-RPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-M 1266 (1412)
Q Consensus 1189 ~i~~~~-~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g~-~ 1266 (1412)
..+ .+++++||.+.++ ++.|+.+|.+|++|+|++||+||||||||||++|||||+ ||+++|||||++|+.++ .
T Consensus 744 ---~~f~~~~l~~~~~~~~~-~~~~~~a~~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~ 818 (940)
T 2wxf_A 744 ---AAFNKDALLNWLKSKNP-GEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTK 818 (940)
T ss_dssp ---CSSGGGHHHHHHHHHSC-TTHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---
T ss_pred ---HCCCCHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCC
T ss_conf ---02585569999997598-888999999999988999999998006789844379955-8878988413333045665
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCC--CCC---CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 989-9889610262210213533--431---012888999999971094999999999712888643358
Q 000578 1267 LKT-PERVPFRLTRDIIDGMGVT--GVE---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALS 1330 (1412)
Q Consensus 1267 l~~-pE~VPFRLT~niv~~mG~~--g~e---G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~ 1330 (1412)
+++ ||.|||||||||+++||+. |.+ |.|+.+|+.++++||++++.|+++|++|++||+.+|...
T Consensus 819 l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~~ 888 (940)
T 2wxf_A 819 FGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCS 888 (940)
T ss_dssp ------CCCCCCCHHHHHHHTTTCSCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCSH
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 6888888981477999999707877777434569999999999998678999999999957999545766
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=1.00 E-value=1 Score=460.94 Aligned_cols=249 Identities=22% Similarity=0.367 Sum_probs=217.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCEEEEEEECC--CCEE----EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 544468998656689976323357-828983387861599999079--9668----655441863103679999999999
Q 000578 1033 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLV 1105 (1412)
Q Consensus 1033 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y----~~L~K~G~dDlRqD~ri~Qlf~~i 1105 (1412)
.+.+|.+|. ..|.+|. +.+.|++|+++|++|+++|+| |+.| .+++|.| ||+|||++++|+|++|
T Consensus 773 ~~~lPl~P~--------~~I~~i~~~~~~V~~S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~g-DDLRQD~~v~Qli~lm 843 (1091)
T 3hhm_A 773 GFLSPLNPA--------HQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 843 (1091)
T ss_dssp SEEETTEEE--------EEECSBCGGGCEECCSSSCCEEEEECCCSTTSTTTSCCEEEEEEES-SCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCC--------EEEEEEEECEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHH
T ss_conf 788999950--------0898986154798621058179999547888761134432799748-6331889999999999
Q ss_pred HHHHHCCCCCCCCCCEEECCEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99985081222554111101288728998620002898756887522003899888778886106788762004376899
Q 000578 1106 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1185 (1412)
Q Consensus 1106 N~lL~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~g~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1185 (1412)
|.+|++++ ++|.+++|.|+|+++++||||||+|++|+++|+... |....
T Consensus 844 n~il~~~~----~dL~l~~Y~Vip~s~~~GlIE~V~ns~Tl~~I~~~~----~~~~~----------------------- 892 (1091)
T 3hhm_A 844 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGA----------------------- 892 (1091)
T ss_dssp HHHHHTTT----CCCCCCCCCEEEEETTEEEEECCSSEEEHHHHHHSC----TTTCT-----------------------
T ss_pred HHHHHHCC----CCCEEEEEEEEECCCCCCCEEECCCCHHHHHHHHHH----CCCCC-----------------------
T ss_conf 99998579----980676226998469876434538725099999861----86510-----------------------
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCHHHCCC
Q ss_conf 999998522-2238999999808955899999998985344568876523578899707884489918997510100014
Q 000578 1186 AFQEVCENF-RPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1264 (1412)
Q Consensus 1186 ~f~~i~~~~-~pvl~~~f~~~f~~p~~w~~~R~~ft~S~A~~SivgYiLgLGDRH~~NILid~~TG~v~hIDfg~~f~~g 1264 (1412)
..+ .+++++||.+.| ++..|+.+|.+|++|+|++||+|||||+||||++|||||+ ||+++|||||++|+.+
T Consensus 893 ------~~f~~~~L~~~f~~~~-~~~~~~~ar~nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~ 964 (1091)
T 3hhm_A 893 ------LQFNSHTLHQWLKDKN-KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHK 964 (1091)
T ss_dssp ------TCCCTTHHHHHHHTTS-CTTSHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC-
T ss_pred ------CCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEC-CCCEEEEEEHHHHCCC
T ss_conf ------0247467999998608-7689999999999976424243788760688876469907-9998987025454038
Q ss_pred C-CC-CCCCCCCCCCCCCCCCCCCC--CCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6-89-89988961026221021353--3431-----01288899999997109499999999971288864335
Q 000578 1265 L-ML-KTPERVPFRLTRDIIDGMGV--TGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1329 (1412)
Q Consensus 1265 ~-~l-~~pE~VPFRLT~niv~~mG~--~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1329 (1412)
+ .+ ..||.||||||+||+++||+ .|+| |.|+.+|+.++.+||++++.|++++++|+++++.+|..
T Consensus 965 ~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~ 1038 (1091)
T 3hhm_A 965 KKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS 1038 (1091)
T ss_dssp -----------CCCCCHHHHHHSSCSSSCCSSSHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSS
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 76677776788843279999998257777655520778999999999999865678999999980699976576
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=1.00 E-value=1 Score=90.56 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
Q ss_conf 855889999999999019022562163431579
Q 000578 1380 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1412 (1412)
Q Consensus 1380 ~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1412 (1412)
+++||++||+.||++|||++|||+||+||+||+
T Consensus 1 ~~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 1 NELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CCSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 998889999999999659899998710003679
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=26.26 Aligned_cols=63 Identities=11% Similarity=-0.040 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999998049944999999999732179998887101222199999999879907999999999962
Q 000578 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1412)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lk~i~~~ 751 (1412)
.++...+.+..+.|++..|...+.++..+.+. +..+.+..|..+...|+...|+..++..++.
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--------NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999999878899999999999884845--------4899999999998703799999999999885
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 2468999976079999999999985000
Q 000578 408 LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1412)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1412)
....+.-|.+.|++.+|+.+|+..++.+
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9998899998399899999999999729
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=24.64 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999998049944999999999732179998887101222199999999879907999999999962
Q 000578 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1412)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~iE~AklLWaqGe~~~AI~~Lk~i~~~ 751 (1412)
...|...+.+....|++..|...+.++..+.+ ....+....+.++..+|+...|+..++..+..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSP--------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 79999999999985789999999999985296--------87899999999999868899999999999864
Done!