BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000580
(1410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75694|NU155_HUMAN Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1
SV=1
Length = 1391
Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 361/1348 (26%), Positives = 570/1348 (42%), Gaps = 237/1348 (17%)
Query: 56 PLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCP 115
P + + LP LVE++ + N + G+FP I RAW ++D+ +F+W ++ G
Sbjct: 79 PEISSIRRVPLPPELVEQFGHM--QCNCMMGVFPPISRAWLTIDSDIFMWNYED-GGDLA 135
Query: 116 EYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCC----SGAGDGTDPYA 171
+ G + I AVGL K K GIF +++LL+LATPV+++++G+ +G+G D +
Sbjct: 136 YFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLS 195
Query: 172 E-ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVC 229
+ L P P Y++P+D + IT TD GRI LAG+DG +YE+ Y +GW+ +RCRK+
Sbjct: 196 GGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKIN 255
Query: 230 HTAGVGNVISRWIVPNV--FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDG 287
H+ + ++VP++ F F DPI+++ DN R +LY R+E+ +QV+ LG +G G
Sbjct: 256 HSKSSLS----FLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQG 311
Query: 288 PLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD 347
+ + +N G R RS +V I+ + ES L+AV
Sbjct: 312 MSRVASVSQNAI----VSAAGNIA---RTIDRSVFKPIVQIAVIENSESLDCQLLAVTHA 364
Query: 348 GRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAG 407
G R+Y ST F RP+ L +V R P GF A S
Sbjct: 365 GVRLYFSTCP-------------FRQPLARPNTLTLVHVRLPP--------GFSASSTVE 403
Query: 408 RNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARI--- 464
+ KV A YS G L+++ + L V+ D P +A +
Sbjct: 404 KPS------KVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGH 457
Query: 465 SRALRESVTSLPVEGRMLSVT-DILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKL 523
S AL ++ L V+ + + D +P+ D+ VQ
Sbjct: 458 SWAL-SAIDELKVDKIITPLNKDHIPITDSPVVVQ------------------------- 491
Query: 524 WARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN--SPRSILEDFFNRFG 581
QH+LP ++ V+ S G + RPVD LR L N +E FF
Sbjct: 492 --------QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQ 543
Query: 582 AGEAAAMCLMLAARIVHSENLIS----NAVAEKAAEAFV--------------------- 616
+A A CL+LA + +S A EA +
Sbjct: 544 EDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVY 603
Query: 617 ------------DPRLVGMPQLEGSN---------ALANTRTAAGGFSMGQVVQEAEPVF 655
+P +G P G AL N T A S V E V+
Sbjct: 604 SSSPVPSGSPYPNPSFLGTPS-HGIQPPAMSTPVCALGNPATQATNMS---CVTGPEIVY 659
Query: 656 SGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLEN---KIRSLE 712
SG + G+C+ SR++ +W+ +VV+ S N + SS Q+LE+ +++ L+
Sbjct: 660 SGKHNGICIYFSRIMGNIWD-ASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQ 718
Query: 713 KFLRCIRNQRRGLYGYVAGMGDLSGSI---LYGTGADSVAGDQSLIRNLFGSYSRNADSN 769
+FL RN + G G + + + L G Q + + L + S
Sbjct: 719 EFLD--RNSQ--FAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSE 774
Query: 770 GAGTSNKRQRLPYSPAELAAIELLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDR 829
+Q + S LA +LL +H T +V L+++L TF LV ++
Sbjct: 775 KISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRDK--E 832
Query: 830 LATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDS 889
L LI++L+ Y + VD IS L++ CP + D A E L+R+ +
Sbjct: 833 LTGALIASLINCYIRDNA--AVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNK 890
Query: 890 EEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQ 949
EKE + RE+ K+ DL VC ++ +RFYE VV L L A+ DP G +
Sbjct: 891 TEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFY 950
Query: 950 IDAATRE-----YALVQRQQCYEIITSALRSL--KGDSSQREFGSPVRPAGPRSALDPAS 1002
E A +R Y+ IT L+ L + ++ + P +P P + DP
Sbjct: 951 KHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNM 1010
Query: 1003 RKK-----YICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGRE 1057
+ Q+++L +S D +F LY +I + L ++LL+ P L P L +
Sbjct: 1011 LSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAK- 1069
Query: 1058 PIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERR 1117
+ N +Y DLL RYY R AA VL RLA+
Sbjct: 1070 ------------------------VDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMH 1105
Query: 1118 STDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQT 1177
ST+ +L QR +Y++ AIL AK++T S+ A D L LE K+ V R Q
Sbjct: 1106 STE----ISLQQRLEYIARAILSAKSSTAISSI------AADGEFLHELEEKMEVARIQL 1155
Query: 1178 KIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQL 1237
+I++ L+ + + + S D+ S D+ +L IT+L
Sbjct: 1156 QIQETLQ------------RQYSHHSSVQDAVSQLDS---------------ELMDITKL 1188
Query: 1238 YNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQ------ALSKGGIAEACS 1291
Y E+A PF+L E L +++ A Y+ D +++ W +I++ LS A S
Sbjct: 1189 YGEFADPFKLAECKLAIIHCAGYS---DPILVQTLWQDIIEKELSDSVTLSSSDRMHALS 1245
Query: 1292 VLKRVGSHMYPGDGAVLPLDTLCLHLEK 1319
+ + +Y G PLD + LE+
Sbjct: 1246 LKIVLLGKIYAGTPRFFPLDFIVQFLEQ 1273
>sp|Q99P88|NU155_MOUSE Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2
SV=1
Length = 1391
Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 352/1344 (26%), Positives = 565/1344 (42%), Gaps = 229/1344 (17%)
Query: 56 PLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCP 115
P + + LP LVE++ + N + G+FP I RAW ++D+ +F+W ++ G
Sbjct: 79 PEISTIRRVPLPPELVEQFGHM--QCNCMMGVFPPISRAWLTIDSDIFMWNYED-GGDLA 135
Query: 116 EYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAE--- 172
+ G + I AVGL K K GIF +++LL+LATPV+++++G+ + G+ +
Sbjct: 136 YFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANVQTGSGILNDSMC 195
Query: 173 --ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVC 229
+ L P P Y++P+D + IT TD GRI LAG+DG +YE+ Y +GW+ +RCRK+
Sbjct: 196 GGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKIN 255
Query: 230 HTAGVGNVISRWIVPNV--FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDG 287
H+ + ++VP++ F F DPIV++ DN R +LY R+E+ +QV+ LG +G G
Sbjct: 256 HSKSSLS----FLVPSLLQFTFSEDDPIVQIEIDNSRNILYTRSEKGVIQVYDLGHDGQG 311
Query: 288 PLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD 347
+ + +N G R RS +V I+ + + ES L+AV
Sbjct: 312 MSRVASVSQNAI----VSAAGNIA---RTIDRSVFKPIVQIAVIESSESLDCQLLAVTHA 364
Query: 348 GRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAG 407
G R+Y ST F RP+ L +V R P GF A S
Sbjct: 365 GVRLYFSTCP-------------FRQPLARPNTLTLVHVRLPP--------GFSASSTVE 403
Query: 408 RNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARI--- 464
+ KV A YS G L+++ + L V+ D P + R+
Sbjct: 404 KPS------KVHKALYSKGILLMTASENEDNDILWCVNHDTFPFQKPMMETQMTTRVDGH 457
Query: 465 SRALRESVTSLPVEGRMLSVT-DILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKL 523
S AL ++ L V+ + + D +P+ D+ VQ
Sbjct: 458 SWAL-SAIDELKVDKIITPLNKDHIPITDSPVVVQ------------------------- 491
Query: 524 WARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN--SPRSILEDFFNRFG 581
QH+LP ++ V+ S G + RPVD LR L N +E FF
Sbjct: 492 --------QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQ 543
Query: 582 AGEAAAMCLMLAARIVHSENLIS----NAVAEKAAEAFV--------------------- 616
+A A CL+LA + +S A EA +
Sbjct: 544 EDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPATLPTPSNVGPILGSPMY 603
Query: 617 ------------DPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEA-----EPVFSGAY 659
+P +G P +T A G Q + E V+SG +
Sbjct: 604 SSSPVPSGSPYPNPSSLGTPSHGAQPPTMSTPMCAVGSPAMQAASMSGLTGPEIVYSGKH 663
Query: 660 EGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLEN---KIRSLEKFLR 716
G+C+ SR++ +W+ +VV+ S N + SS +Q+LE+ +++ L++FL
Sbjct: 664 NGICIYFSRIMGNIWD-ASLVVERVFKSSNREITAIESSVPVQLLESVLQELKGLQEFLD 722
Query: 717 CIRNQRRGLYGYVAGMGDLSGSI---LYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGT 773
RN + G G + + + L G Q + + L + S
Sbjct: 723 --RNSQ--FSGGPLGNPNTTARVQQRLVGFMRPENGNTQQMQQELQRKFQEAQLSEKISL 778
Query: 774 SNKRQRLPYSPAELAAIELLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATR 833
+Q + S LA +LL +H + +V +++L TF LV ++ +
Sbjct: 779 QAIQQLVRKSYQALALWKLLCEHQFSVIVGELQKEFQEQLKITTFKDLVIRDK--EVTGA 836
Query: 834 LISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKE 893
LI++L+ Y + VD IS L++ CP + D A E L+R+ E+E
Sbjct: 837 LIASLINCYIRDN--AAVDGISLHLQDTCPLLYSTDDAVCSKANELLQRSRQVQSKTERE 894
Query: 894 NLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAA 953
+ RE+ K+ DL +VC ++ +RFYE VV L L A+ DP G +
Sbjct: 895 RMLRESLKEYQKISNQVDLPSVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGE 954
Query: 954 TRE-----YALVQRQQCYEIITSALRSL--KGDSSQREFGSPVRPAGPRSALDP-----A 1001
E +R Y+ IT L+ L + ++ + P +P P + DP
Sbjct: 955 PEEDVVGLQTFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNE 1014
Query: 1002 SRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQE 1061
+ Q+++L +S D +F LY +I L ++LL+ P L P L R
Sbjct: 1015 EAGHHFEQMLKLAQRSKDELFSIALYNWLIQADLADKLLQIASPFLEPHLVRMAR----- 1069
Query: 1062 VRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDE 1121
+ N +Y DLL RYY R AA VL +LA+ ST+
Sbjct: 1070 --------------------VDQNRVRYMDLLWRYYEKNRSFSSAARVLSKLADMHSTE- 1108
Query: 1122 KDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKD 1181
+L QR +Y++ AIL AK++T S+ A D L LE K+ V R Q +I++
Sbjct: 1109 ---ISLQQRLEYIARAILSAKSSTAISSI------AADGEFLHELEEKMEVARIQLQIQE 1159
Query: 1182 ELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEY 1241
L+ + + + S D+ S D+ +L IT+LY E+
Sbjct: 1160 TLQ------------RQYSHHSSVQDAISQLDS---------------ELMDITKLYGEF 1192
Query: 1242 AVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQ------ALSKGGIAEACSVLKR 1295
A PF+L E L +++ A Y+ D ++ W +I++ ALS A S+
Sbjct: 1193 ADPFKLAECKLAVIHCAGYS---DPILVHTLWQDIIEKELNDSVALSSSDRMHALSLKLV 1249
Query: 1296 VGSHMYPGDGAVLPLDTLCLHLEK 1319
+ +Y G PLD + LE+
Sbjct: 1250 LLGKIYAGTPRFFPLDFIVQFLEQ 1273
>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155
PE=1 SV=1
Length = 1390
Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 344/1315 (26%), Positives = 550/1315 (41%), Gaps = 221/1315 (16%)
Query: 82 NALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAI 141
A+ G+FP I RAW ++D+ +F+W ++ G + G + I AVGL K K GIF +
Sbjct: 102 TAMMGVFPPISRAWLTIDSDIFMWNYED-GGDLAYFDGLSETILAVGLVKPKAGIFQPHV 160
Query: 142 QYLLILATPVELILVGVCCSGAGDGTDPYAE-----ISLQPLPEYTVPSDGVTMTCITCT 196
++LL+LATPV+++++G+ + G+ + + L P P Y++P+D + IT T
Sbjct: 161 RHLLVLATPVDIVILGLSYANVQTGSGILNDSVCGGLQLLPDPLYSLPTDNTYLLTITST 220
Query: 197 DKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNV--FRFGAVD 253
D GRI LAG+DG +YE+ Y +GW+ +RCRK+ H+ + ++VP++ F F D
Sbjct: 221 DNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLS----FLVPSLLQFTFSEDD 276
Query: 254 PIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTG 313
PIV++ DN R +LY R+E+ +QV+ LG +G G + + +N G
Sbjct: 277 PIVQIEIDNSRNILYTRSEKGVIQVYDLGHDGQGMSRVASVSQNAI----VCAAGNIA-- 330
Query: 314 QRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNN 373
R RS +V I+ + ES L+AV G R+Y ST F
Sbjct: 331 -RTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCP-------------FRQ 376
Query: 374 HHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDA 433
RP+ L +V R P GF A S + KV A YS G L+++ +
Sbjct: 377 PLARPNTLTLVHVRLPP--------GFSASSTVEKPS------KVHKALYSKGILLMTAS 422
Query: 434 SPPTMSSLIIVSKDPSSQSYPTGSLGTSARI---SRALRESVTSLPVEGRMLSVT-DILP 489
L V+ D P + R+ S AL ++ L V+ + + D +P
Sbjct: 423 ENEDNDILWCVNHDTFPFQKPMMETQMTTRVDGHSWAL-SAIDELKVDKIITPLNKDHIP 481
Query: 490 LPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMM 549
+ D+ VQ QH+LP ++ V+ S G +
Sbjct: 482 ITDSPVVVQ---------------------------------QHMLPPKKFVLLSAQGSL 508
Query: 550 EVVFNRPVDILRRLFELN--SPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLIS--- 604
RPVD LR L N +E FF +A A CL+LA + +S
Sbjct: 509 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA 568
Query: 605 -NAVAEKAAEA---------------------------------FVDPRLVGMPQLEGSN 630
A EA + +P +G P
Sbjct: 569 TRAFFRYGGEAQMRFPATLPTPSNVGPILGSPMYSSSPVPTGSPYPNPSSLGTPSHGAQP 628
Query: 631 ALANTRTAAGGFSMGQVVQEA-----EPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDA 685
+T +A G Q + E V+SG + G+C+ SR++ +W+ +VV+
Sbjct: 629 PTMSTPMSAVGNPAMQAASLSGLTGPEIVYSGKHNGICIYFSRIMGNIWD-ASLVVERVF 687
Query: 686 ISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSI---LYG 742
S N + SS +Q+LE+ ++ L K L+ ++ G G + + + L G
Sbjct: 688 KSSNREITAIESSVPIQLLESVLQEL-KGLQEFLDRNSQFSGGPLGNPNTTAKVQQRLLG 746
Query: 743 TGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIELLSQHHVTRLV 802
Q + + L + S +Q + S LA +LL +H T +V
Sbjct: 747 VMRPENGNTQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTVIV 806
Query: 803 QGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGC 862
+++L TF LV E+ + LI++L+ Y + VD IS L++ C
Sbjct: 807 GELQKEFQEQLKITTFKDLVIREK--EVTGALIASLINCYIRDNA--AVDGISLHLQDTC 862
Query: 863 PSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDL 922
P + D A E L+R+ E+E + RE+ K+ DL +VC ++ +
Sbjct: 863 PLLYSTDDAVCSKANELLQRSRQVQSKSERERMLRESLKEYQKISNQVDLPSVCAQYRQV 922
Query: 923 RFYEAVVRLPLQKAQALDPAGDAFNDQIDAATRE-----YALVQRQQCYEIITSALRSL- 976
RFYE VV L L A+ DP G + E +R Y+ IT L+ L
Sbjct: 923 RFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDVVGLQTFQERLNSYKCITDTLQELV 982
Query: 977 -KGDSSQREFGSPVRPAGPRSALDP-----ASRKKYICQIVQLGVQSPDRIFHEYLYRTM 1030
+ ++ + P +P P + DP + Q+++L +S D +F LY +
Sbjct: 983 NQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLAQRSKDELFSIALYNWL 1042
Query: 1031 IDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYF 1090
I L ++LL+ P L P L + + N +Y
Sbjct: 1043 IQADLADKLLQIASPFLEPHLVRMAK-------------------------VDQNRVRYM 1077
Query: 1091 DLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSL 1150
DLL RYY R AA VL +LA+ ST+ +L QR +Y++ AIL AK++T S+
Sbjct: 1078 DLLWRYYEKNRSFSSAARVLSKLADMHSTEI----SLQQRLEYIARAILSAKSSTAISSI 1133
Query: 1151 VGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSS 1210
A D L LE K+ V R Q +I++ L+ + + + S D+ S
Sbjct: 1134 ------AADGEFLHELEEKMEVARIQLQIQETLQ------------RQYSHHSSVQDAIS 1175
Query: 1211 TTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIR 1270
D+ +L IT+LY E+A PF+L E L +++ A Y+ D ++
Sbjct: 1176 QLDS---------------ELMDITKLYGEFADPFKLAECKLAIIHCAGYS---DPILVH 1217
Query: 1271 ETWARLIDQ------ALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEK 1319
W +I++ LS A S+ + +Y G PLD + LE+
Sbjct: 1218 TLWQDIIEKELSDSVTLSSSDRMHALSLKLVLLGKIYAGTPRFFPLDFIVQFLEQ 1272
>sp|Q9URX8|NG06_SCHPO Probable nucleoporin C890.06 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC890.06 PE=3 SV=3
Length = 1315
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 310/1338 (23%), Positives = 512/1338 (38%), Gaps = 228/1338 (17%)
Query: 54 WPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQ 113
W P + ++P + E+YN E G+F EI+RAW +VDN LFLW D GQ
Sbjct: 59 WKPFY-LRSVVNIPDRIFEQYNRT--ECFTQMGLFAEIQRAWITVDNRLFLW--DYLSGQ 113
Query: 114 CPE-YTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAE 172
+ Y I V L + K +FV IQ+LL++AT E++L+GV G +
Sbjct: 114 NFQAYEDLSHTIVNVKLVRPKANVFVSEIQHLLVIATSQEMLLLGVTID-EKTGELSFFS 172
Query: 173 ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSGWY-KRCRKVCH 230
+Q + G+ + CI ++ GRI +G +D N+YE Y GW+ +RC K+
Sbjct: 173 TGIQ------ISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRRCSKINI 226
Query: 231 TAGVGNVISRWIVPNVFRFGAV-DPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPL 289
T G+V +I P+ F FG D I ++ D+ R LLY E + + L NG
Sbjct: 227 T---GSVFDNFI-PSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG---- 278
Query: 290 KKVAEERNLFNQRDTHHGGRQTTGQRAP---HRSTKPSVVSISPLSTLESKWLHLVAVLS 346
R +F + Q +P R+T+ +VSI P+ ES+ ++ VA+ S
Sbjct: 279 ----VNRCVFYSFSSMISQAQMLNATSPLLDPRTTQ--IVSIVPIPAYESQQIYCVAITS 332
Query: 347 DGRRMYLSTSASSGNSGTVGGVGGFNN--HHFRPSCLKVVTTRPSPPLGV---GGGLGFG 401
G R Y+ G G + N+ PS L++ R PP+ V +
Sbjct: 333 TGCRFYM-----RGGRGPISHYAPSNSTLSSTPPSTLQLTFVRFPPPMQVENYASSRNYP 387
Query: 402 AISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLI--IVSKDPSSQSYPTGSLG 459
A +NQS ++ + S S S L I S + + +
Sbjct: 388 ANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFAISSSNTNEGDVVCCTAP 447
Query: 460 TSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKS 519
RI+ A + +E M +P+ ++ + + E
Sbjct: 448 EVGRIANAWQSGTQPSLIESSMY-----VPIKGFVQDIKCIQNSRE-------------- 488
Query: 520 SGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSI-----LE 574
R +L +Q P + + G+ VV RP+D+L + S ++
Sbjct: 489 ------RNELVSQFNTPPPTFAILTNTGVYVVVHRRPIDVLASAIRMGPSLSSGIDGQVQ 542
Query: 575 DFFNRFGAGEAAAMCLMLAARIV------HSENLISNAVAEKAAEAFVDPRLVGMPQLE- 627
FF G E A CL + + + H+ S + + A +D +V +E
Sbjct: 543 LFFESVGRAEGCATCLGIVSGCLDQGDFSHAAANFSGSTTKLAQADLLD--IVKKYYIEF 600
Query: 628 GSNALANTRTAAGGFSMGQVVQEAEPV-FSGAYEGLCLCASRLLFPLWELPVMVVKGDAI 686
G A + + + E V SG ++GL SR++ +W+ V++ K
Sbjct: 601 GGKAFIDQSRYNNQYDSSSL----EFVRLSGCHDGLASSISRIIRNVWKNHVIIAKK--- 653
Query: 687 SENGVVVCRLSSGAMQVLENKIRS----LEKFLRCIRNQRRGLY--GYVAGMGDLSGSIL 740
+N + + A ++L KI+S L FL ++ GL + G +++ I
Sbjct: 654 MQNKRIHYAPAFNATEIL--KIQSGLLYLSTFLENNKSFIEGLNSPNTLIGSSNVADEIA 711
Query: 741 YGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIELLSQHHVTR 800
+++ +++ + S N G S+ +
Sbjct: 712 VQAEHRALSALLLVLQQIVEGISFLLFLNDTGVSDFHE---------------------- 749
Query: 801 LVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLRE 860
+V ++++ +TF + S+ G + L+++L+ + G +D +S LR+
Sbjct: 750 IVSSTSIDIQKSCSNMTFGEFFTSKRGREVTKELVNSLVNRHL--QSGGNIDMVSQLLRK 807
Query: 861 GCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSK-----VPESADLRTV 915
C S+ D F AVE L++A T D EE+++L ++ K PE DLR
Sbjct: 808 KCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHVFTPE--DLRLA 865
Query: 916 CRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAA----TREYALVQRQQCYEIITS 971
++ L Y V L L A A D A + +D R R +CY I
Sbjct: 866 VEEYKSLNAYTTAVNLALHVASARDDRNQALSYLVDGMPENDPRREPFESRTKCYSYIFE 925
Query: 972 ALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMI 1031
L SL+ S D ++ K + +Q +S D +FH Y
Sbjct: 926 ILDSLESQMSN----------------DSSAIKVDVYDTIQ---RSKDELFHYCFYDWYS 966
Query: 1032 DLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFD 1091
GL + L+E P + +L+ + + K D
Sbjct: 967 FKGLTDRLIEIDSPYIQSYLERNS----------------------------TKDMKIAD 998
Query: 1092 LLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLV 1151
LL +YY + Q+ A+ VL LA A +L+QR +YL+ A S +
Sbjct: 999 LLWQYYAKREQYYQASIVLYDLATTHL-----AFSLEQRIEYLTRA-----KGFGSCHVP 1048
Query: 1152 GSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSST 1211
S R + +L +LE +L V Q D L AI + E
Sbjct: 1049 NSLRHKMNKVMLSVLE-QLDVASIQ---DDVLIAIRGDMRIPTSKRE------------- 1091
Query: 1212 TDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTG-----DADS 1266
E +K+L ++ ++ L+N YA P EICL + A+Y G +
Sbjct: 1092 ----------ELSKQLDGEIIPLSDLFNNYADPLGYGEICLSIFQCADYRGINEILNCWE 1141
Query: 1267 SIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLD 1326
SII+ T I + + S LK + + V P++ + E+ A D
Sbjct: 1142 SIIKTTHENAIISPVGSSPVEAVSSTLKNLTLRFSQSEN-VFPIEQIIDITERYA---FD 1197
Query: 1327 SQVESVGDEDIARALLAA 1344
Q E+V + L A
Sbjct: 1198 QQGEAVATGWVIDTFLGA 1215
>sp|P38181|NU170_YEAST Nucleoporin NUP170 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP170 PE=1 SV=1
Length = 1502
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 274/1326 (20%), Positives = 509/1326 (38%), Gaps = 237/1326 (17%)
Query: 59 EVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYT 118
E D +++P ++ ++ + + + GIFPE+ R W ++DN L LW + D +
Sbjct: 149 EKQDVFNIPDEILHEFSTSQTKTD--MGIFPELNRCWITIDNKLILWNINN-DNEYQVVD 205
Query: 119 GEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178
+ I V L + KP FV A+++LL+++T +EL + + A + +
Sbjct: 206 DMKHTIQKVALVRPKPNTFVPAVKHLLLISTTMELFMFAISLDKATNELSVFN------- 258
Query: 179 PEYTVPSDGVTMTCITCTDK-GRILLAGRDG--NIYELLYTTGSGWYK-RCRKVCHTAGV 234
+VP G+ + I ++ GRI AG+ NI+EL Y+ W+ +C KVC T
Sbjct: 259 THLSVPVQGIDVIDIVSHERSGRIFFAGQASGLNIWELHYSGSDDWFNSKCSKVCLTKSA 318
Query: 235 ------GNVISRWIVPNVFRFGAV-------------DPIVELVFDNERQLLYARTEEMK 275
N++S+ +P V A+ + I +L D +R ++Y+ + +
Sbjct: 319 LLSLLPTNMLSQ--IPGVDFIQALFEDNSNGNGGFSQETITQLTIDQQRGIIYSLSSKST 376
Query: 276 LQVFVLGPNG-DGPLKKVAEERNLFNQRDTHHGGR---QTTGQRAPHRSTKP-SVVSISP 330
++ +V+ +GP+ + + R TT + AP K +V IS
Sbjct: 377 IRAYVITEKSLEGPM-----------SIEPAYISRIIGTTTARAAPILGPKYLKIVKISS 425
Query: 331 LSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSP 390
++ E+ L LVA+ G R+Y + G +G FN R +K + +P
Sbjct: 426 VAPEENNNLFLVALTVGGVRLYFN-----------GSMGRFNIEALRLESIKFPPSSVTP 474
Query: 391 PLGVGGGLGFGAISLAGRN--------QSDDISLKVE--TAYYSAGTLVLSDASPPTMSS 440
+ + L A R+ S+ + LK + ++ T + SP S
Sbjct: 475 EV-IQQELLHQQQEQAKRSFPFFSNLMSSEPVLLKFQKKSSVLLETTKASTIISPGIFFS 533
Query: 441 LIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPV---EGRMLSVTDILPLPDTATTV 497
+I S + Q + + + A ++V PV +SV D L V
Sbjct: 534 AVIKSSQQTHQQEKKENSSVTGTTATAGSKTVKQQPVTLQHKLFVSVPDYGILKTHGKYV 593
Query: 498 QSLYSELEFCG-----FEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVV 552
++ + LE G +SG + + +A + +TQ+ R+ V ++ +
Sbjct: 594 ENA-TFLETAGPVQQIIPLSGLFNATTKPQGFA-NEFATQYTSETLRVAVLTSTSIEIYK 651
Query: 553 FNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVA--EK 610
+ P +I L + P F +GA EA + L + + SE L SNA+
Sbjct: 652 YRTPDEIFEDLIDNPLP------FVLNYGAAEACSTALFVTCKSNKSEKLRSNALTFLTM 705
Query: 611 AAEAFVDPRLV-------------GMPQLEGSNALANTRTAAGGFSMGQVVQEA-----E 652
VD + V P L S A N + + GFS + +
Sbjct: 706 GIPGVVDIKPVYNRYSVSTVSSLLSKPTL--STATTNLQQSITGFSKPSPANKEDFDLDD 763
Query: 653 PVFSGAYEGLCLCASRLLFPLWELPV-MVVKGDAISENGVV---------VCRLSSGAMQ 702
+ S + G+ L +RLL +W V M + ++ + + + L S +
Sbjct: 764 VILSPRFYGIALLITRLLRDIWGRHVFMTFTDNRVTSHAFISSSDPITPSINNLKSDEIS 823
Query: 703 VLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSG-SILYGTGADSVAGDQSLIRNLFGS 761
N I + CI Y++ + L+ I YG ++ L N G
Sbjct: 824 QNRNIISKVSISKDCIE-------YYLSSINILNEFFITYGDSISQISAPYVLANNSNGR 876
Query: 762 YSRNAD--SNGAGTSNKRQRLPYSPAELAAIELLSQHHVTRLVQGFDA------------ 807
+ +N A + + + + L+ + V+GFD
Sbjct: 877 VIDKTEEVANQAESIAINAMIKMVQSIKEGLSFLNVLYEESEVEGFDNQYLGFKDIISFV 936
Query: 808 --NLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRG-TVDDISGRLREGCPS 864
+++++LV+L F L + + R I L+ +G +++ + L+E C S
Sbjct: 937 SLDVQKDLVKLDFKDLFAPNDKTKSLIREI--LLSIINRNITKGASIEYTATALQERCGS 994
Query: 865 YFKESDYKFFLAVECLERAAVTS--DSEEKENLAREAFNFLSKVPES---ADLRTVCRRF 919
+ SD F A+E L RA + + + A L ++ + L+
Sbjct: 995 FCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNATALLEQIVDDLSIEKLKEAVSMM 1054
Query: 920 EDLRFYEAVVRLPLQKAQALDPAGDA----FNDQIDAATREYALVQRQQCYEIITSALRS 975
+ +Y + L A ++D A N ++ R+ +R Y+++ L
Sbjct: 1055 LSVNYYPKSIEFLLNIANSMDKGKLACQYVANGFLENDDRKQYYDKRILVYDLVFDTL-- 1112
Query: 976 LKGDS-SQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLG 1034
+K D ++++ S + S D ++ + + ++ DR+FH ++Y ++
Sbjct: 1113 IKVDELAEKKQSSKTQNQISISNDDEVKLRQ---KSYEAALKYNDRLFHYHMYDWLVSQN 1169
Query: 1035 LENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLA 1094
E +LL+ P ++P+ LM + G+ + K ++L
Sbjct: 1170 REEKLLDIETPFILPY-----------------------LMEKAGSSL-----KISNILW 1201
Query: 1095 RYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGST 1154
YY + + +A +L RLA T D TL +R ++LS A
Sbjct: 1202 VYYSRRSKFFESAEILYRLA----TSNFDI-TLFERIEFLSRA----------------- 1239
Query: 1155 RGAFDNGLLDLLEGKLAVLRFQTKIKD--ELEAIASSLETSVDMSESTQNGSAPDSSSTT 1212
F N + L K +++ ++I+D E+ I + + V T
Sbjct: 1240 -NGFCNS-VSPLSQKQRIVQLASRIQDACEVAGIQGDILSLV----------------YT 1281
Query: 1213 DANYAKIVR-EKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRE 1271
DA ++ E K L + S ++L+N++AVP EI L + A++ D +I
Sbjct: 1282 DARIDSAIKDELIKTLDGKILSTSELFNDFAVPLSYHEIALFIFKIADF---RDHEVIMA 1338
Query: 1272 TWARLI 1277
W L
Sbjct: 1339 KWDELF 1344
>sp|P40064|NU157_YEAST Nucleoporin NUP157 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP157 PE=1 SV=1
Length = 1391
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 37/300 (12%)
Query: 86 GIFPEIRRAWASVDNSLFLWRFDK-WDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYL 144
GIF E+ W + DN L LW + + C + E I V L K P FV +++ L
Sbjct: 164 GIFLELNYCWITSDNKLILWNINNSSEYHCIDEI--EHTILKVKLVKPSPNTFVSSVENL 221
Query: 145 LILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDK-GRILL 203
LI+AT ++ ++ + + D E+++ V G ++ I ++ G+I
Sbjct: 222 LIVATLFDIYILTISFN------DRTHELNIFN-TGLKVNVTGFNVSNIISYERTGQIFF 274
Query: 204 AG-RDG-NIYELLYTTGSGWYK-RCRKVCHT-AGVGNVISRWIVPNVFRFGAVDPIVE-- 257
G DG N++EL Y + + K+C T + + N++ ++P++ + ++E
Sbjct: 275 TGATDGVNVWELQYNCSENLFNSKSNKICLTKSNLANLLPTKLIPSIPGGKLIQKVLEGD 334
Query: 258 ----------LVFDNERQLLYARTEEMKLQVFVLGPNG-DGPLKKVAEERNLFNQRDTHH 306
L D R +L+ + + ++ +++ NG GP+ L +
Sbjct: 335 AGTEEETISQLEVDQSRGVLHTLSTKSIVRSYLITSNGLVGPV--------LIDAAHIRR 386
Query: 307 GGRQTTGQRAPHRSTKP-SVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTV 365
G + +P S + + I +S E+ L L + + G R+Y S S + G++
Sbjct: 387 GMNALGVKNSPLLSNRAFKIAKIVSISMCENNDLFLAVITTTGVRLYFKGSISRRSIGSL 446
>sp|Q59526|PARE_MYCGA DNA topoisomerase 4 subunit B OS=Mycoplasma gallisepticum (strain
R(low / passage 15 / clone 2)) GN=parE PE=3 SV=2
Length = 633
Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 187 GVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNV 246
GV + + + I+ RDG +YE +Y G + +KV ++ G ++ W P +
Sbjct: 116 GVGASVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTI 175
Query: 247 FRFGAVDP 254
F+ +P
Sbjct: 176 FKNIQFNP 183
>sp|O54827|AT10A_MOUSE Probable phospholipid-transporting ATPase VA OS=Mus musculus
GN=Atp10a PE=1 SV=4
Length = 1508
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 554 NRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAE 613
++P +R FEL SP +EDF RF A+ C + NL ++ + K+
Sbjct: 591 DQPRQKVRVRFELKSPVKTIEDFLRRFTPSRLASGCSSIG-------NLSTSKSSHKSGS 643
Query: 614 AFV-----DPRLVGMPQLEGSNA 631
AF+ D L+G+ + G A
Sbjct: 644 AFLPSLSQDSMLLGLEEKLGQTA 666
>sp|A9BCK0|EFTU_PROM4 Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211)
GN=tuf PE=3 SV=1
Length = 399
Score = 33.9 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 812 ELVQLTFCQLVCSEE--GDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKES 869
ELV++ +L+ S + GD + +SAL D + G +D++ + E P +E
Sbjct: 148 ELVEMEIRELLSSYDFPGDDIPVIQVSALKALEGDSEWEGKIDELMKSVDESIPEPEREV 207
Query: 870 DYKFFLAVE 878
D F +AVE
Sbjct: 208 DKPFLMAVE 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,536,054
Number of Sequences: 539616
Number of extensions: 22254695
Number of successful extensions: 54796
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 54736
Number of HSP's gapped (non-prelim): 38
length of query: 1410
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1280
effective length of database: 121,419,379
effective search space: 155416805120
effective search space used: 155416805120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)