Query 000580
Match_columns 1410
No_of_seqs 182 out of 256
Neff 6.2
Searched_HMMs 46136
Date Mon Apr 1 20:06:15 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1900 Nuclear pore complex, 100.0 2E-190 5E-195 1752.6 74.6 1195 5-1406 8-1268(1311)
2 COG5308 NUP170 Nuclear pore co 100.0 1E-176 3E-181 1555.4 57.0 1132 12-1405 19-1225(1263)
3 PF08801 Nucleoporin_N: Nup133 100.0 8.5E-52 1.8E-56 500.3 7.0 402 53-550 2-422 (422)
4 PF03177 Nucleoporin_C: Non-re 100.0 3.1E-48 6.6E-53 487.8 -2.0 517 694-1316 2-586 (586)
5 KOG4121 Nuclear pore complex, 97.5 0.0022 4.8E-08 82.2 18.0 243 913-1279 776-1026(1128)
6 KOG1900 Nuclear pore complex, 97.4 0.00029 6.2E-09 92.2 7.7 179 413-627 369-549 (1311)
7 KOG4521 Nuclear pore complex, 95.4 0.61 1.3E-05 61.5 18.7 158 914-1140 988-1156(1480)
8 cd00200 WD40 WD40 domain, foun 93.8 0.84 1.8E-05 49.9 13.3 148 83-280 139-289 (289)
9 cd00200 WD40 WD40 domain, foun 93.3 3.2 6.9E-05 45.3 16.9 151 83-282 13-165 (289)
10 PF11715 Nup160: Nucleoporin N 91.8 1.2 2.6E-05 56.8 12.4 178 99-283 43-249 (547)
11 KOG0319 WD40-repeat-containing 91.4 0.62 1.3E-05 58.9 8.8 142 97-282 384-535 (775)
12 KOG0646 WD40 repeat protein [G 90.7 2.4 5.3E-05 51.4 12.4 78 188-283 124-207 (476)
13 PLN00181 protein SPA1-RELATED; 89.9 8.9 0.00019 51.3 18.5 156 95-281 635-792 (793)
14 KOG0289 mRNA splicing factor [ 89.8 16 0.00035 44.3 18.0 177 81-284 221-421 (506)
15 KOG0646 WD40 repeat protein [G 89.7 6.2 0.00014 48.1 14.7 95 181-283 212-308 (476)
16 KOG0315 G-protein beta subunit 88.9 6.3 0.00014 44.8 13.0 180 93-354 13-195 (311)
17 KOG0291 WD40-repeat-containing 88.2 5.8 0.00013 50.8 13.5 140 97-282 369-508 (893)
18 KOG0279 G protein beta subunit 86.0 40 0.00087 39.2 17.4 159 97-283 82-263 (315)
19 KOG0274 Cdc4 and related F-box 82.9 6.6 0.00014 50.1 10.9 139 88-283 257-401 (537)
20 KOG0319 WD40-repeat-containing 80.8 15 0.00032 47.2 12.5 136 94-283 297-443 (775)
21 KOG0308 Conserved WD40 repeat- 80.0 17 0.00037 46.1 12.5 151 94-283 89-244 (735)
22 KOG2110 Uncharacterized conser 79.2 53 0.0012 39.5 15.5 164 94-283 60-249 (391)
23 KOG0291 WD40-repeat-containing 77.7 61 0.0013 42.2 16.3 178 95-283 206-423 (893)
24 KOG2111 Uncharacterized conser 77.1 80 0.0017 37.5 15.9 151 100-284 75-258 (346)
25 KOG0296 Angio-associated migra 74.9 45 0.00098 40.0 13.4 47 80-129 65-114 (399)
26 PF04840 Vps16_C: Vps16, C-ter 74.6 34 0.00074 41.0 12.8 107 1090-1244 97-206 (319)
27 KOG2096 WD40 repeat protein [G 73.5 40 0.00087 39.8 12.3 68 194-283 235-309 (420)
28 KOG0276 Vesicle coat complex C 71.3 20 0.00042 45.5 9.8 135 99-282 118-257 (794)
29 PLN00181 protein SPA1-RELATED; 70.8 94 0.002 41.8 17.2 31 252-282 708-738 (793)
30 KOG0313 Microtubule binding pr 69.7 37 0.00079 40.9 11.1 164 97-285 122-292 (423)
31 KOG0275 Conserved WD40 repeat- 69.2 23 0.00049 41.5 9.1 137 97-280 367-507 (508)
32 KOG0294 WD40 repeat-containing 68.2 53 0.0011 38.8 11.8 158 82-295 130-294 (362)
33 PF10264 Stork_head: Winged he 67.5 16 0.00034 34.9 6.2 57 829-886 11-67 (80)
34 KOG0306 WD40-repeat-containing 67.5 48 0.001 43.0 12.2 152 80-282 9-179 (888)
35 KOG0266 WD40 repeat-containing 64.7 89 0.0019 39.2 14.2 72 186-283 245-319 (456)
36 PTZ00421 coronin; Provisional 64.6 1.2E+02 0.0026 38.5 15.4 30 254-283 261-291 (493)
37 KOG1446 Histone H3 (Lys4) meth 64.4 1.6E+02 0.0036 34.8 14.8 74 187-289 100-177 (311)
38 PF08450 SGL: SMP-30/Gluconola 64.2 63 0.0014 36.5 11.8 107 143-286 52-168 (246)
39 KOG0318 WD40 repeat stress pro 63.2 1.8E+02 0.0039 36.7 15.5 35 250-284 318-352 (603)
40 COG2706 3-carboxymuconate cycl 62.8 3.5E+02 0.0075 32.8 18.7 163 100-284 16-223 (346)
41 KOG0285 Pleiotropic regulator 62.0 1.7E+02 0.0036 35.4 14.3 194 70-282 228-439 (460)
42 PTZ00420 coronin; Provisional 61.2 4.8E+02 0.011 33.9 20.5 142 98-283 52-198 (568)
43 KOG1188 WD40 repeat protein [G 59.6 28 0.0006 41.4 7.6 164 98-281 141-345 (376)
44 PF10282 Lactonase: Lactonase, 57.4 95 0.0021 37.3 12.2 118 186-354 142-262 (345)
45 PF00400 WD40: WD domain, G-be 57.1 33 0.00071 26.8 5.6 31 250-280 9-39 (39)
46 PRK11028 6-phosphogluconolacto 56.7 3.3E+02 0.0071 32.1 16.5 31 255-285 128-159 (330)
47 KOG0270 WD40 repeat-containing 56.6 3.1E+02 0.0068 34.0 15.7 48 81-129 241-294 (463)
48 KOG0315 G-protein beta subunit 56.1 2.3E+02 0.0049 32.9 13.6 133 100-283 61-198 (311)
49 KOG0266 WD40 repeat-containing 55.6 2.3E+02 0.005 35.5 15.6 156 84-283 208-365 (456)
50 KOG2111 Uncharacterized conser 54.8 1E+02 0.0022 36.5 11.1 115 92-222 105-241 (346)
51 KOG0772 Uncharacterized conser 53.6 79 0.0017 39.6 10.3 168 80-283 168-395 (641)
52 PF10168 Nup88: Nuclear pore c 53.0 1.6E+02 0.0034 39.3 13.9 137 144-295 43-190 (717)
53 KOG2055 WD40 repeat protein [G 52.5 5.7E+02 0.012 32.1 17.4 219 102-442 282-509 (514)
54 KOG2919 Guanine nucleotide-bin 51.7 69 0.0015 38.0 9.0 126 192-354 233-366 (406)
55 KOG0293 WD40 repeat-containing 51.2 76 0.0016 38.7 9.5 70 252-353 354-423 (519)
56 PRK11028 6-phosphogluconolacto 46.7 5.5E+02 0.012 30.2 16.4 165 85-284 131-306 (330)
57 KOG0288 WD40 repeat protein Ti 44.1 2.2E+02 0.0048 35.0 11.9 190 68-283 196-418 (459)
58 KOG2110 Uncharacterized conser 43.6 3.3E+02 0.0072 33.1 13.1 35 250-285 171-206 (391)
59 KOG0318 WD40 repeat stress pro 42.7 3.5E+02 0.0076 34.3 13.4 137 96-283 380-518 (603)
60 KOG0642 Cell-cycle nuclear pro 42.4 1.7E+02 0.0038 37.1 11.0 180 88-282 302-519 (577)
61 KOG1273 WD40 repeat protein [G 42.2 2.5E+02 0.0055 33.5 11.6 139 96-282 83-226 (405)
62 PF05694 SBP56: 56kDa selenium 40.9 1.3E+02 0.0028 37.5 9.5 127 198-356 258-393 (461)
63 KOG2114 Vacuolar assembly/sort 40.8 93 0.002 41.2 8.7 70 191-284 28-102 (933)
64 KOG0642 Cell-cycle nuclear pro 40.8 72 0.0016 40.3 7.5 73 187-283 489-562 (577)
65 KOG0265 U5 snRNP-specific prot 40.2 6.6E+02 0.014 30.0 14.4 144 99-283 68-247 (338)
66 PF13570 PQQ_3: PQQ-like domai 40.1 27 0.00058 28.2 2.6 19 196-214 19-37 (40)
67 PTZ00421 coronin; Provisional 39.8 5.6E+02 0.012 32.7 15.5 71 187-283 125-199 (493)
68 KOG0285 Pleiotropic regulator 38.9 6.4E+02 0.014 30.7 14.3 175 98-282 171-389 (460)
69 KOG0649 WD40 repeat protein [G 38.3 65 0.0014 36.9 6.0 63 197-283 125-187 (325)
70 KOG0276 Vesicle coat complex C 38.2 3.8E+02 0.0082 34.8 12.9 138 99-284 34-173 (794)
71 KOG0308 Conserved WD40 repeat- 37.0 3E+02 0.0064 35.8 11.9 136 97-282 137-285 (735)
72 PF04184 ST7: ST7 protein; In 36.6 1.6E+02 0.0034 37.3 9.4 48 862-909 157-204 (539)
73 COG2706 3-carboxymuconate cycl 35.8 8.9E+02 0.019 29.5 16.5 185 54-284 125-323 (346)
74 KOG0973 Histone transcription 35.7 1.2E+02 0.0026 41.0 8.7 104 180-283 62-202 (942)
75 KOG1446 Histone H3 (Lys4) meth 35.1 2.5E+02 0.0054 33.4 10.2 19 195-213 240-261 (311)
76 KOG0296 Angio-associated migra 34.9 6.1E+02 0.013 31.0 13.4 171 97-282 167-356 (399)
77 KOG0305 Anaphase promoting com 34.4 3.4E+02 0.0074 34.5 12.1 171 62-284 285-463 (484)
78 KOG0272 U4/U6 small nuclear ri 33.8 1.5E+02 0.0032 36.5 8.3 139 91-282 232-375 (459)
79 PF10366 Vps39_1: Vacuolar sor 33.7 90 0.002 31.4 5.8 28 1089-1116 41-68 (108)
80 PF14727 PHTB1_N: PTHB1 N-term 33.5 8.5E+02 0.018 30.5 15.2 40 119-163 69-109 (418)
81 KOG1587 Cytoplasmic dynein int 33.5 2.9E+02 0.0063 35.8 11.5 180 95-288 260-478 (555)
82 KOG0294 WD40 repeat-containing 33.4 3.5E+02 0.0075 32.4 10.9 127 146-282 4-157 (362)
83 PF00780 CNH: CNH domain; Int 32.6 1.1E+02 0.0023 35.1 7.1 61 196-283 5-65 (275)
84 KOG0772 Uncharacterized conser 32.5 1.8E+02 0.0039 36.7 8.8 99 98-220 384-490 (641)
85 PTZ00420 coronin; Provisional 32.4 2.9E+02 0.0063 35.9 11.4 24 193-216 269-293 (568)
86 KOG2048 WD40 repeat protein [G 31.4 8.5E+02 0.019 31.9 14.6 169 84-283 328-506 (691)
87 KOG0286 G-protein beta subunit 30.9 4.5E+02 0.0098 31.2 11.2 135 99-281 165-302 (343)
88 KOG0974 WD-repeat protein WDR6 30.0 2.6E+02 0.0057 37.9 10.3 166 94-275 405-577 (967)
89 TIGR01063 gyrA DNA gyrase, A s 29.5 5.8E+02 0.012 34.7 13.8 129 187-356 535-668 (800)
90 KOG0292 Vesicle coat complex C 29.5 6.7E+02 0.015 34.0 13.5 65 196-283 215-281 (1202)
91 KOG0640 mRNA cleavage stimulat 28.6 1E+03 0.022 28.6 13.5 23 189-211 263-286 (430)
92 PF03178 CPSF_A: CPSF A subuni 28.5 5.1E+02 0.011 30.5 12.0 103 91-218 98-204 (321)
93 KOG4460 Nuclear pore complex, 28.4 2.1E+02 0.0046 36.2 8.6 89 188-284 104-200 (741)
94 KOG2048 WD40 repeat protein [G 27.6 5.7E+02 0.012 33.4 12.3 125 129-282 474-601 (691)
95 KOG1539 WD repeat protein [Gen 27.3 7.9E+02 0.017 33.1 13.6 34 320-353 393-426 (910)
96 KOG1912 WD40 repeat protein [G 26.9 8.4E+02 0.018 32.7 13.5 181 94-288 83-310 (1062)
97 PRK14574 hmsH outer membrane p 26.1 9.5E+02 0.021 32.8 14.9 227 817-1117 191-446 (822)
98 KOG0310 Conserved WD40 repeat- 25.8 7.2E+02 0.016 31.4 12.3 76 118-217 23-99 (487)
99 KOG0286 G-protein beta subunit 25.7 2.5E+02 0.0054 33.3 8.0 131 97-279 206-342 (343)
100 COG5308 NUP170 Nuclear pore co 25.1 59 0.0013 43.1 3.4 43 525-567 476-518 (1263)
101 KOG1036 Mitotic spindle checkp 24.3 1.3E+03 0.028 27.7 16.3 200 54-284 33-264 (323)
102 KOG0647 mRNA export protein (c 22.7 7.7E+02 0.017 29.5 11.2 142 96-282 133-281 (347)
103 PF02333 Phytase: Phytase; In 22.3 1.4E+03 0.031 28.2 14.2 35 252-286 207-241 (381)
104 KOG0268 Sof1-like rRNA process 22.2 3E+02 0.0065 33.4 8.0 58 149-215 196-258 (433)
105 PF13766 ECH_C: 2-enoyl-CoA Hy 22.1 2.5E+02 0.0054 28.7 6.7 77 837-932 7-91 (118)
106 smart00320 WD40 WD40 repeats. 22.1 1.5E+02 0.0032 20.7 3.9 30 251-280 11-40 (40)
107 KOG0306 WD40-repeat-containing 21.4 4.6E+02 0.0099 34.8 9.9 152 94-284 123-276 (888)
108 TIGR01674 phage_lambda_G phage 21.4 1.5E+02 0.0032 31.2 4.7 20 1125-1144 20-39 (138)
109 PF10433 MMS1_N: Mono-function 20.9 1.5E+03 0.033 28.6 14.9 148 142-354 222-387 (504)
110 PF14779 BBS1: Ciliary BBSome 20.6 2.3E+02 0.0049 33.1 6.6 76 121-213 176-255 (257)
111 KOG0640 mRNA cleavage stimulat 20.2 3.1E+02 0.0068 32.6 7.5 73 185-280 214-289 (430)
112 KOG0278 Serine/threonine kinas 20.1 4.6E+02 0.0099 30.5 8.5 88 120-232 223-314 (334)
113 KOG3611 Semaphorins [Signal tr 20.1 2.2E+02 0.0047 38.1 7.1 76 187-278 407-489 (737)
No 1
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-190 Score=1752.57 Aligned_cols=1195 Identities=31% Similarity=0.435 Sum_probs=904.8
Q ss_pred cchhccccccccchhhhhhhhhhccccCHHHHHhhccccCCCCCCCCCCCCCcccccccccCCHHHHHHHHhcCCccccc
Q 000580 5 EEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNAL 84 (1410)
Q Consensus 5 ~~~~~~~~~~a~~~~~d~~~~d~~~~pdl~~~~~~~~~~~~~y~~~~~~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~ 84 (1410)
.+.+..++....-...|++.+-..+-.++.+.+ +..|.+++++....+|+||.+. .+++||+||+|||+++ +|+|.
T Consensus 8 ~~~v~~hv~~~~~~~~~~i~~~t~~dl~~~p~~-gl~~~~~~~~~~L~~~~p~~~~-~v~~IP~el~eq~~~~--~~~~~ 83 (1311)
T KOG1900|consen 8 VSGVEGHVTELLVLGSDFIGRLTMSDLKLTPVL-GLGYAFSYEVRGLPEFRPFYRQ-QVVNIPDELLEQFSNI--ECKTD 83 (1311)
T ss_pred hhhhhhhhhhHHHhhhhhhhhhhhcCCCCCccc-ccccccccccCCCccCCceeec-ccccCCHHHHHHhcCc--ceeee
Confidence 344445554444444555555444443444444 4578889999888899999985 9999999999999999 99999
Q ss_pred cccccccceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCC
Q 000580 85 CGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAG 164 (1410)
Q Consensus 85 mGlFPEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~ 164 (1410)
|||||||+|||+||||+||||||++++ ++.+|||++|+|++|||||||||||+++|+||||||||+||+||||+++...
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 999999999999999999999999844 4589999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCCCEEEEEEecCCccc-cccceeeeccCcccccccccc
Q 000580 165 DGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIV 243 (1410)
Q Consensus 165 ~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~~~~Wf-~rc~kinht~g~~S~~~~~~l 243 (1410)
+ +...+++. |+|++||++|+||++|++|||||+|+||||||+.||.++||| +||+|||||+|..|. +|
T Consensus 163 ~------~~~~f~~~-~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~----lv 231 (1311)
T KOG1900|consen 163 G------ELSIFNTS-FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS----LV 231 (1311)
T ss_pred C------cccccccc-eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH----hh
Confidence 4 56788875 999999999999999999999999999999999999999999 999999999987666 47
Q ss_pred ccccc--cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCC
Q 000580 244 PNVFR--FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRST 321 (1410)
Q Consensus 244 Ps~~~--~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1410)
|++++ ++.+|+|.||+||++|+|||+|+++|+|++|+||++|...++.+ ++. +..+..++.+. ..+ .+.+.
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~-~~~----~~~i~~qa~~~-~~~-~~~s~ 304 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFV-SVS----RNYIDVQALSL-KNP-LDDSV 304 (1311)
T ss_pred hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeee-ehh----HHHHHHHhhhc-ccc-CCCcc
Confidence 77643 35789999999999999999999999999999999998874443 332 22222222111 112 77889
Q ss_pred CCcEEEEEecCccCccceEEEEEecCceEEEEecCCCCCCCCC-----c---cCCCCCCCCCCCCCceEEEEEeCCCCCC
Q 000580 322 KPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGT-----V---GGVGGFNNHHFRPSCLKVVTTRPSPPLG 393 (1410)
Q Consensus 322 ~~~IVsI~pIs~~ES~~l~LVAVT~~G~RlYfs~~~~~~~s~~-----~---~~~~g~~~~~~~P~~L~lvhVR~PP~~~ 393 (1410)
+++||+|+||++.||+++||||+|++|+||||+++++..+... . ++-.++......|..|++.|+|.+|+..
T Consensus 305 f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s~~r~~~~~~~~~s~~~~p~~~~~~q~s~~p~pl~v~~~~~~~~~t 384 (1311)
T KOG1900|consen 305 FFSIVSISPLSASESNDLHLVAITSTGVRLYFSTSSGRQSTSAPFLCSVKHTPTSNSLEQTSISPPPLQVQNVRSSKGYT 384 (1311)
T ss_pred cceeEEecccCcccccceeEEEEecCCeEEEEeccCCCcccccccccccCCCCCCCCccccccCCCCceeeeeeccCCcc
Confidence 9999999999999999999999999999999999875322100 0 0000001112345556666666655532
Q ss_pred CCCCCCccccccccCCCCCcccceeeeeEecCCcEEEEecCCCCcceEEEEecCCCCCCCCCCCCCccccccccceeeEE
Q 000580 394 VGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVT 473 (1410)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~v~~a~Ys~G~~l~~~~~~~~~d~L~~~s~d~~~~~~~~~~~~~~~~~~~~l~E~~~ 473 (1410)
+. +.+. .+..++...|.+++..+-+..... ..+...+...+.-. +....-.....+...|..+
T Consensus 385 ~~-----------a~t~---~~~~~~~~~~~~~t~~~~~~~k~~-~~lt~~~~~~~~~~--s~~~~~l~~s~~~~g~~~~ 447 (1311)
T KOG1900|consen 385 PA-----------ASTI---NSDNIELICVAKRTVLLLTLSKSS-SSLTAIALVESVLL--SCRSDELFVSAPDYGELKT 447 (1311)
T ss_pred cc-----------ceee---cCCCceEEEEcccchhcccccccc-cceEeecccceeee--cccccceeeeccchhhhhh
Confidence 21 1111 122333444444433222221111 11111111111100 0000000011223334444
Q ss_pred eeccCCeeEEEeecCCCCCcccccccccccccccccccCCCcccccCCccccCCcccccccCCCceEEEEcCCceEEEEE
Q 000580 474 SLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVF 553 (1410)
Q Consensus 474 ~~~l~g~~~~i~~v~~~p~~~~~~~~l~~~~e~~~~~~~~~~~~k~~p~~~~~nela~Q~~~ppr~f~vLTn~Gi~i~~~ 553 (1410)
-.|..+++..+.++.+.+....+.+.++. - .|-.+ .|+|++||..+|.+++++|++++.++..
T Consensus 448 ~~~~~e~~~~~e~~~~~~~i~lt~q~~~~----------~------~~~~~-v~~l~~~~~s~~~~~~~~t~~~~~~~~~ 510 (1311)
T KOG1900|consen 448 HGPYTEQPASVEDVPPKEIILLTNQDIYT----------S------APLRY-VNVLASQYLSEPGKDAELTERSIYLYRY 510 (1311)
T ss_pred cccccccccchhccCccceeeeecchhhh----------h------hhhhh-HHHHHHHHhcCCchhhhhccceeEEEee
Confidence 44555555555554344433333332222 1 13333 4999999999999999999999999999
Q ss_pred cChHHHHHHHHhccCChhHHHHHHHHhChHHHHHHHHHHHcCcccCccccCHHHHHHHHHhc------------------
Q 000580 554 NRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAF------------------ 615 (1410)
Q Consensus 554 ~RPvDiL~~LL~~~~~~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~s~~v~~~A~~af------------------ 615 (1410)
|||.+++..++.... .|-..+|..|||++|++..|....+... ....|..+|
T Consensus 511 R~~~~v~~~li~~~~------~~~~~v~~~~~l~~~~y~~~~~~~s~~~----~gsn~~~~l~~~~~~~~~~~~ks~~~~ 580 (1311)
T KOG1900|consen 511 RRPIVVFLSLIKMPL------PFARYVDIWEALATALYGRELYEKSETL----EGSNAGMFLSEAAPGFSKVTLKSNREM 580 (1311)
T ss_pred ccHhHHHHHHhcCCC------cccCchHHHHHHHHHhhcchhhhhhccc----ccchhhhHhhccCCCcCcCCcccchhc
Confidence 999999999999887 5778888889999999988876544331 011111111
Q ss_pred ---cCCCCCCCcccccCccccccccCCCCCccccccccCcceeccchhHHHHHHHhhhhhccCCcceeeeccccCCCCeE
Q 000580 616 ---VDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVV 692 (1410)
Q Consensus 616 ---~~~~~~g~p~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~S~rh~Gl~Ly~sRLlrpiW~~~v~~~~~~~~~~~~~i 692 (1410)
..+..+|+|+++.+.+..+.++..+| ...+++|||||+|||+|++||+|+||+.+|++.. .++.+
T Consensus 581 ~~~~~~~~vg~~~~~~s~~i~~~~~~~p~-------~~~~iv~S~~h~Gl~l~isRll~~vW~~~v~~~~---~s~~~-- 648 (1311)
T KOG1900|consen 581 FKFLSNPSVGMPQFDGSQPISTLSNSCPG-------ELDPIVLSGKHDGLALLISRLLRNVWEESVVNET---MSEKS-- 648 (1311)
T ss_pred cccccCCCCCcCccccCCCccccCCCCCc-------cCCCeEEeccccchhHHHHHHHHHHHHhHHHHHH---hhcch--
Confidence 12223455554443222222211111 3456899999999999999999999999999862 12211
Q ss_pred EEecChhHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCCCccccCCCCCCCCCchhhhhhccccccccCCCCCcc
Q 000580 693 VCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAG 772 (1410)
Q Consensus 693 ~~~~s~~~l~~~~~~L~~L~~Fl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1410)
.++.+.+.++.|+.|++. +....+++.+++++.+..++++++ +....+.+++.
T Consensus 649 -------~~~~l~s~~~sl~~~~~~----~~~y~gs~~~l~~~f~~~l~~~~s----------------f~~~~~~n~~~ 701 (1311)
T KOG1900|consen 649 -------KCHLLESFNRSLRSKRNQ----FSYYLGSITGLNEFFNSHLDSTNS----------------FEGPTNGNAEK 701 (1311)
T ss_pred -------hhhhHHHhhHHHHhhhhh----cceeeccccccchhhhhccccccc----------------ccccccchhHH
Confidence 567777788888888855 455565666665555444443332 22222222211
Q ss_pred cchhhh-------cCCCChHHHHH----------HHHHhhhcHHHHHhhcCHHHHHHhhhccccccccCchhhHHHHHHH
Q 000580 773 TSNKRQ-------RLPYSPAELAA----------IELLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLI 835 (1410)
Q Consensus 773 ~~~~~q-------~l~~~~~e~~~----------~eiL~e~~~~~I~~~l~~~~q~~L~~ltF~dLv~~~~g~~l~k~Li 835 (1410)
++..+. ..+.++++..+ +.+|++|+|.+|++.++++.|+.|.++||+|||++++ ++++++||
T Consensus 702 ~~~le~~a~~A~~~e~~si~~~~~fl~~~~Ea~l~~~l~~h~f~~Iv~els~~lqk~l~~ltF~dl~~~nd-kel~~~li 780 (1311)
T KOG1900|consen 702 AQQLESSAREALALELRSIKEILSFLLVLYEAFLWFLLSQHHFIDIVSELSADLQKELSCLTFHDLFTSND-KELTKELL 780 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhCHHHHHHHHhccHHHhcCcch-HHHHHHHH
Confidence 111100 01111112111 1168899999999999999999999999999999988 99999999
Q ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 000580 836 SALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTV 915 (1410)
Q Consensus 836 ~aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~~~~er~~~L~eAL~Lf~kv~~~~~L~~v 915 (1410)
.++||+||.+. ++||.||..||++||+||+++|+++|||.|+|++|+.+.+..++++++|++|+++.++.+.++|+.+
T Consensus 781 ~slin~~i~s~--a~vd~vs~~Lre~Cps~~s~~D~l~ykA~E~L~~~~~~~~~~~ke~~~r~~l~~~~~l~~~~~l~~~ 858 (1311)
T KOG1900|consen 781 ISLINRYIMSG--ASVDYVSELLRERCPSFCSASDILTYKAVELLENAAAKLEATIKELMLRESLSVATKLFNQVDLRLE 858 (1311)
T ss_pred HHHHHHHhccC--CChhHHHHHHHHhCcccccchHHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 99999999985 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCCccc------------CCcchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 000580 916 CRRFEDLRFYEAVVRLPLQKAQALDPAGDAFN------------DQIDAATREYALVQRQQCYEIITSALRSLKGDSSQR 983 (1410)
Q Consensus 916 c~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~------------~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~ 983 (1410)
|.+|++++||+|+|++.+.+|.+.||+..+.. |....++|..+|+.|..||.+||+++++++....
T Consensus 859 ~~~lr~~~f~e~vv~~~~~~a~~~~~~~~~~~d~~~~e~~~~~~G~~~~~~R~~~y~~r~~~~~~if~~l~~~~~~~~-- 936 (1311)
T KOG1900|consen 859 CADLRAERFYEGVVLLSLTKAVKSDPEGANDHDYKNQELAYDIIGISENDDRKVYYELRTLVYSLIFDTLDEADGSQS-- 936 (1311)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhcChhhchhhhccccchHHHhcCccccChHHHHHHHHHHHHHHHHHHHHhhccccc--
Confidence 99999999999999999999999999998863 3456788999999999999999999999886432
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCccccccccCCChHHHHhhcCCCchhhhh
Q 000580 984 EFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVR 1063 (1410)
Q Consensus 984 ~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~~~d~LLei~sPfLe~yL~~~~~~~~~~~~ 1063 (1410)
.+++|..++ +.... .-.++.++|...++++||+||++||+||+.+++.|+||++.|||+.|||+|++..+
T Consensus 937 ~~q~~~~~n----s~~~~-a~~~~~~~~~~~~k~~d~lfh~~lydwL~~~~~~e~ll~i~sp~~~P~L~r~a~~d----- 1006 (1311)
T KOG1900|consen 937 ISQSPMKGN----SDSNF-AVGLILKSYMAILKSKDRLFHYALYDWLVAISLLEELLDIESPFILPYLKRMALSD----- 1006 (1311)
T ss_pred ccCCCCccc----ccchh-hhhhHHHHHHHHhhhcccccchhhHHHHHHhhHHHHHhcccCccccHHHHHhhhcc-----
Confidence 122222221 23333 55778889999999999999999999999999999999999999999999998754
Q ss_pred hcccccccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 000580 1064 AVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKN 1143 (1410)
Q Consensus 1064 ~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~aks 1143 (1410)
++++||||+||+|+++|.+||+||++||. +.|+|+|+||||||+||+++|||
T Consensus 1007 -----------------------lk~~dLLw~YY~K~e~~~~AA~VL~rLAt-----~~~~itLeqRiEyLsRA~~~~~s 1058 (1311)
T KOG1900|consen 1007 -----------------------LKIFDLLWKYYEKREQFSQAAHVLYRLAT-----SSFDITLEQRIEYLSRAVGFAKS 1058 (1311)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999995 55789999999999999999999
Q ss_pred cCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCCCCCccchhhHHHHHHH
Q 000580 1144 ATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREK 1223 (1410)
Q Consensus 1144 ~~~~~~~~g~~~~~~~~~fl~~le~kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 1223 (1410)
+++ +++. +.+++|+.++|||+|||.||.+|+.++.+.+.. +.+++++
T Consensus 1059 ~s~-----~s~~-~a~~qf~~~i~dklevA~iQ~dvl~a~~d~~~~---------------------------~~~~~el 1105 (1311)
T KOG1900|consen 1059 SSP-----SSSK-VAVGQFLIEIEDKLEVASIQDDVLVAMQDDRID---------------------------ASAANEL 1105 (1311)
T ss_pred CCC-----chhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc---------------------------hhHHHHH
Confidence 986 3333 347999999999999999999999887754322 1247799
Q ss_pred HHHhcccCCCHHHHHHHhhccCCchhHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHhcCCHHH-H----HHHHHHhcc
Q 000580 1224 AKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAE-A----CSVLKRVGS 1298 (1410)
Q Consensus 1224 i~~L~~~Ll~it~Lyn~yA~P~~l~E~~L~Il~~s~~~~~~d~~~I~~~W~~ii~~~~~~~~~~e-~----~~~v~~lg~ 1298 (1410)
+++||++|+|+|+|||||||||+||||||.|||||+| +|+.+|+++|++||+++++++++.. . .++|..++
T Consensus 1106 ~k~Ld~el~~~t~Lyn~fAdPf~l~Ei~L~I~~~a~y---~D~~~I~~~W~~li~s~~~~~~~~~~~~~~~~~~I~~~~- 1181 (1311)
T KOG1900|consen 1106 VKELDGELLSLTQLYNEFADPFDLWEICLSIFKCADY---SDPSLIQETWARLIDSALSQPGITSEVLKRLGSKISNTL- 1181 (1311)
T ss_pred HHHhccccccHHHHHHhccCcchHHHHHHHHhhhccC---CChHHHHHHHHHHHHHHHhcCCCcHHHHhhHHHHHhhhh-
Confidence 9999999999999999999999999999999999999 6999999999999999999885433 2 35666666
Q ss_pred cccCCCCccccHHHHHHHHHHHHHhhcccccccCCchhHHHHHHHhcCCCchhHHhhhcCCCCCCCCCCCcchhhhcccC
Q 000580 1299 HMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTS 1378 (1410)
Q Consensus 1299 ~~y~~~~~~FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~~l~~Y~~L~~~~~~~~~~~~~~~~~~~ 1378 (1410)
+.|...++.||..|.|..||..+|++ .++. +..+.++ |++.+.+|++|++++++..+.|.+..=.+|
T Consensus 1182 ~~~~~~~~~~~~~F~i~~l~~~~~~~------~~d~---~~~~~a~-g~~~~~~L~ay~~~~~~~~vl~~~~~~~~~--- 1248 (1311)
T KOG1900|consen 1182 KVYGKTDVDSEFVFPIAELESKVCEL------FFDE---PKELAAC-GSVIEPFLEAYVSLLKMYYVLWSLIERSEH--- 1248 (1311)
T ss_pred hhhcCCcccCchhhhHHHHHHHHHHH------hccc---HHHHhhh-cccHHHHHHHHHHHHHHHHHhhhhhcchhh---
Confidence 44555559999999999999999997 3332 4445555 788999999999999999999998865566
Q ss_pred ccccccccccccccccchhhHHHHHHHH
Q 000580 1379 GYAFFDQCSWYLESGQCLYLQKEWVQAL 1406 (1410)
Q Consensus 1379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1406 (1410)
...+-..||.||+|+||+..
T Consensus 1249 --------~~~~~~ke~~~lv~~~~~~~ 1268 (1311)
T KOG1900|consen 1249 --------LVLVVIKEVTWLVKNWYQVS 1268 (1311)
T ss_pred --------hHHHHHHHHHHHHhchhhhc
Confidence 45555689999999999864
No 2
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-176 Score=1555.40 Aligned_cols=1132 Identities=22% Similarity=0.338 Sum_probs=887.0
Q ss_pred cccccchhhhhhhhhhccccCHHHHHh---hccccCCCCCCCCCCCCCcccccccccCCHHHHHHHHhcCCccccccccc
Q 000580 12 VTNAGLVVSDRIGREVASQLDVEEALE---ASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIF 88 (1410)
Q Consensus 12 ~~~a~~~~~d~~~~d~~~~pdl~~~~~---~~~~~~~~y~~~~~~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlF 88 (1410)
|.-|+.-+++-..|| ...|.|+|+.. +..|.++.+ .+|.||.+ ...++|||++++||+++ ||.|.||||
T Consensus 19 l~la~~~i~~l~~rD-~ktP~Lde~~yy~~gldyifs~e----~gftpfy~-qqv~nIpdrilsq~srt--E~ktdmGif 90 (1263)
T COG5308 19 LLLALHWIGMLLKRD-TKTPSLDEAKYYEEGLDYIFSIE----TGFTPFYA-QQVMNIPDRILSQISRT--EYKTDMGIF 90 (1263)
T ss_pred HHHHHHHhhhhhhcc-cCCCccccchhhhcCCcceehhh----hCCChHHH-hhhccCcHHHHhhccch--hhhcccchh
Confidence 566777785555555 45889998741 112333223 25999987 59999999999999999 999999999
Q ss_pred cccceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCC
Q 000580 89 PEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTD 168 (1410)
Q Consensus 89 PEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~ 168 (1410)
|||+|||+|+||+|+||||++++. +..+|+++|+|+.|+||+||||+|++.|+|||+|||..||.||||++++.+
T Consensus 91 ~elnrcWiT~dnkLiLWnynn~ne-yq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T---- 165 (1263)
T COG5308 91 PELNRCWITNDNKLILWNYNNSNE-YQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKT---- 165 (1263)
T ss_pred hhhcceEEEcCCEEEEEecCCCcc-hhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEecccc----
Confidence 999999999999999999997554 468899999999999999999999999999999999999999999997533
Q ss_pred CCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCC-CEEEEEEecCCccc-cccceeeeccC-cccccccccccc
Q 000580 169 PYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG-NIYELLYTTGSGWY-KRCRKVCHTAG-VGNVISRWIVPN 245 (1410)
Q Consensus 169 ~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG-~lyEl~Y~~~~~Wf-~rc~kinht~g-~~S~~~~~~lPs 245 (1410)
+|+++++|. ++||++|+.|.||++.++|||||+|+.+ ||||++|+.+++|| +||.|||.|++ +.|+ +|+
T Consensus 166 --~Els~fnTg-l~vsvqGinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sl-----lPs 237 (1263)
T COG5308 166 --GELSLFNTG-LVVSVQGINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSL-----LPS 237 (1263)
T ss_pred --ceeEEEecc-eEEeccCceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhh-----ccc
Confidence 599999986 9999999999999999999999999955 99999999999999 99999999985 5666 999
Q ss_pred ccccC-CCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCc
Q 000580 246 VFRFG-AVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPS 324 (1410)
Q Consensus 246 ~~~~~-~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1410)
+|.++ ..|.|.|++||++|++||+|+++|+|+.|.|+.+|- .+ +..+..+.+.+++..+++.+-.......+
T Consensus 238 ~~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl--~g-----pv~i~~a~i~r~a~~lna~sPlL~pr~~k 310 (1263)
T COG5308 238 FFSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGL--VG-----PVFISFASIDRNAAILNATSPLLEPRMYK 310 (1263)
T ss_pred ccccCCcccchhheeecccccceeeecccceeeeEeeecccc--cc-----cccccHHHHHhHHhhhccCCcccCCceEE
Confidence 86554 458999999999999999999999999999998874 22 23345565655554444422245667899
Q ss_pred EEEEEecCccCccceEEEEEecCceEEEEecCCCCCCCCCccCCCCCCCCCCCCCceEEEEEeCCCCCCCC------CCC
Q 000580 325 VVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVG------GGL 398 (1410)
Q Consensus 325 IVsI~pIs~~ES~~l~LVAVT~~G~RlYfs~~~~~~~s~~~~~~~g~~~~~~~P~~L~lvhVR~PP~~~~~------~~~ 398 (1410)
||+|.||++.|+.++.|||+|++|||+||..+.|.- .--.+++-.|++|||+... +..
T Consensus 311 IvkIvsi~~~Enn~lflvaiT~tgcRlYf~Gs~gr~----------------si~alkldSvkfpP~S~~~qleq~k~Sr 374 (1263)
T COG5308 311 IVKIVSIPAYENNQLFLVAITSTGCRLYFDGSRGRV----------------SIVALKLDSVKFPPPSTLMQLEQNKGSR 374 (1263)
T ss_pred EEEEeecccccccceEEEEEeccceEEEEecCccce----------------eeecccccccccCCchHHHHHHhcccCc
Confidence 999999999999999999999999999999765421 1234667789999986321 000
Q ss_pred Ccccc---ccccCC--C---CCcccceeeeeEecCCcEEEEecC------------------CCCcceEEEEecCCCCCC
Q 000580 399 GFGAI---SLAGRN--Q---SDDISLKVETAYYSAGTLVLSDAS------------------PPTMSSLIIVSKDPSSQS 452 (1410)
Q Consensus 399 ~~~~~---~~~~~~--~---~~~~~~~v~~a~Ys~G~~l~~~~~------------------~~~~d~L~~~s~d~~~~~ 452 (1410)
.|+.- ...+.+ | +.....+..+..-++|.++++... +.++..+|+..+|.+...
T Consensus 375 ~f~~nl~~~~~~~lk~Qp~ss~~~ett~mstiispgiyfs~v~k~~~s~~~~kG~tv~a~s~nv~qhkl~vS~pdygilk 454 (1263)
T COG5308 375 DFYENLFLDRLVMLKRQPNSSDMTETTEMSTIISPGIYFSAVNKRYDSSNTNKGSTVTAISLNVDQHKLWVSIPDYGILK 454 (1263)
T ss_pred cchhhhcccccchhccCccccchhccceeeEEecCCeeeeeehhhccccccCCCceeeecccchhhhhheeccCCcchhc
Confidence 11100 000000 0 111223344555566666655432 222234444444433322
Q ss_pred CCCCCCCccccccccceeeEEeeccCCeeEEEeecCCCCCccccccccccccccc-ccccCCCcccccCCccccCCcccc
Q 000580 453 YPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFC-GFEISGESCEKSSGKLWARGDLST 531 (1410)
Q Consensus 453 ~~~~~~~~~~~~~~~l~E~~~~~~l~g~~~~i~~v~~~p~~~~~~~~l~~~~e~~-~~~~~~~~~~k~~p~~~~~nela~ 531 (1410)
+. ...|++..+.--+ .|.++.| ++ .||.|+|| + .++|.
T Consensus 455 -----------ss-kyven~~flddi~---~Iq~i~p----------------rt~lfn~t~tP------q----a~fa~ 493 (1263)
T COG5308 455 -----------SS-KYVENVVFLDDIE---LIQNIDP----------------RTELFNQTNTP------Q----ATFAL 493 (1263)
T ss_pred -----------cc-ceeeeeeeehhhH---HHhhccc----------------cchhccccCCC------C----ceeEE
Confidence 22 2355555432111 1222222 33 57888874 3 48999
Q ss_pred cccCCCceEEEEcCCceEEEEEcChHHHHHHHHhccCChhHHHHHHHHhChHHHHHHHHHHHcCcccCccccCHHHHHHH
Q 000580 532 QHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKA 611 (1410)
Q Consensus 532 Q~~~ppr~f~vLTn~Gi~i~~~~RPvDiL~~LL~~~~~~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~s~~v~~~A 611 (1410)
||...+-++++||+.-+.++..|.|.+++..|+.+.. .||.+||+.|||+|||.++|+..+++++.+.+..
T Consensus 494 ly~~e~l~Vavlts~~~eiy~yRtpdeifs~li~npl------pf~~syG~aEaCsTaL~~~ck~nksed~~s~al~--- 564 (1263)
T COG5308 494 LYGNEKLFVAVLTSVEKEIYSYRTPDEIFSGLIGNPL------PFYKSYGEAEACSTALLYYCKLNKSEDVGSLALL--- 564 (1263)
T ss_pred eecCccEEEEEEechhhhhhhhcCcHHHhhhhccCcc------hHHHhhhhhhhhhHHHHHHHhhcccchhhhHHHH---
Confidence 9999999999999999999999999999999999987 7999999999999999999999888776555443
Q ss_pred HHhccC---CC----------C-CCCcccccCccccccccCCCCCccccccccCcceeccchhHHHHHHHhhhhhccCCc
Q 000580 612 AEAFVD---PR----------L-VGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELP 677 (1410)
Q Consensus 612 ~~af~~---~~----------~-~g~p~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~S~rh~Gl~Ly~sRLlrpiW~~~ 677 (1410)
|.. |+ + |+.|.++++- ...+ .+.+.| ++|+||+|+++.++|++|.||..+
T Consensus 565 ---f~~~gipdvvdikpkyyr~sgs~p~lsQs~-f~k~------~~ld~v------~LSprfyG~allItrl~rnIw~e~ 628 (1263)
T COG5308 565 ---FLKLGIPDVVDIKPKYYRYSGSVPILSQSR-FNKP------SSLDFV------RLSPRFYGLALLITRLERNIWLER 628 (1263)
T ss_pred ---HHhcCCcchhhhhhHHhhhhcCCCccchhh-cCCc------ccccce------eeccccchHHHHHHHHHHHHHHHH
Confidence 321 11 1 3455544211 0010 144544 999999999999999999999999
Q ss_pred ceeeeccccCCCCeEEEecC-hhHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCCCccccCCCCCCCCCchhhhh
Q 000580 678 VMVVKGDAISENGVVVCRLS-SGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIR 756 (1410)
Q Consensus 678 v~~~~~~~~~~~~~i~~~~s-~~~l~~~~~~L~~L~~Fl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (1410)
|+... .++..-...++ ..+++++++.+..|.+||+.|+..+.|+.. .+ .+++.
T Consensus 629 Vf~~~----~~k~i~~~~~sik~~ieyylSgi~~L~eFl~~~~~si~~~~~---Pl---------------~SN~e---- 682 (1263)
T COG5308 629 VFSKM----QNKMINIRGASIKIKIEYYLSGIDFLDEFLENNKSSIEGLNS---PL---------------ISNDE---- 682 (1263)
T ss_pred Hhhhh----hhhhhhccccchhHHHHHHHhHHHHHHHHHHhccchhhhcCC---cc---------------ccchH----
Confidence 99742 11111011122 568999999999999999999888877752 11 11121
Q ss_pred hccccccccCCCCCcccchhhhcCCCChHHHH-HHHHHhhh---cHHHHHhhcCHHHHHHhhhccccccccCchhhHHHH
Q 000580 757 NLFGSYSRNADSNGAGTSNKRQRLPYSPAELA-AIELLSQH---HVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLAT 832 (1410)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~q~l~~~~~e~~-~~eiL~e~---~~~~I~~~l~~~~q~~L~~ltF~dLv~~~~g~~l~k 832 (1410)
.+.+++..+.+..-.++++++|.. .+.+|.|. .|++|+..-+.++|+.+.+|||+|||++++++++.|
T Consensus 683 --------iA~qAesia~nAlll~~qsikeglS~lnvlyed~~~~f~~ivs~~s~diqk~~~~l~F~elFtpnktk~lik 754 (1263)
T COG5308 683 --------IAVQAESIANNALLLEYQSIKEGLSLLNVLYEDGVSDFHEIVSSTSIDIQKSCSNLTFSELFTPNKTKKLIK 754 (1263)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhcCcHhhhcCCcchHHHHH
Confidence 223344444555555555566644 45678875 889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhHhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCC-
Q 000580 833 RLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVT-SDSEEKENLAREAFNFLSKVPESA- 910 (1410)
Q Consensus 833 ~Li~aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~-~~~~er~~~L~eAL~Lf~kv~~~~- 910 (1410)
+++.+|||++|.. | +|+|.+++.||+||||||+++|+++|||.|+|++|++. .|.++++++|++|..||++++..+
T Consensus 755 Eil~s~VNrni~s-G-~siey~~~~L~ercgsFcsa~Dvl~fra~EhL~kak~~evd~e~~nnhlk~a~~l~e~~v~~~~ 832 (1263)
T COG5308 755 EILKSLVNRNIQS-G-GSIEYLIKTLSERCGSFCSAEDVLYFRALEHLNKAKSREVDLESLNNHLKNAVQLNESLVAKYN 832 (1263)
T ss_pred HHHHHHHhhhccc-C-CcHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999996 7 89999999999999999999999999999999999999 799999999999999999998775
Q ss_pred --CHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCCcc----cCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 000580 911 --DLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAF----NDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQRE 984 (1410)
Q Consensus 911 --~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al----~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~ 984 (1410)
+|+.++..|.+++||..+|++.|..|.++|.+|.|. +|.+.+|+|+..|++|..||.+||++|..++.+...+
T Consensus 833 ~e~lr~av~~m~slNyypk~vnfll~~a~~idkgnqa~~yv~nG~~enDpRk~fydkRi~vY~liFEil~svd~~~s~~- 911 (1263)
T COG5308 833 EEGLRYAVTTMISLNYYPKAVNFLLEYAVEIDKGNQACAYVLNGLAENDPRKDFYDKRIKVYSLIFEILISVDKENSLR- 911 (1263)
T ss_pred HHHHHHHHHHHHHhccccceeehhHHhhHHhhcccHHHHHHhccccccCchhhHHHHhHHHHHHHHHHHHHHHHhhccc-
Confidence 688999999999999999999999999999999986 5788899999999999999999999999999753210
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCccccccccCCChHHHHhhcCCCchhhhhh
Q 000580 985 FGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRA 1064 (1410)
Q Consensus 985 ~~~p~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~~~d~LLei~sPfLe~yL~~~~~~~~~~~~~ 1064 (1410)
. .+.....|..++.|+|++||||+||||+.+|++|+||+|+||||+|||+|++.++
T Consensus 912 ---------------n---s~lk~~vy~~~m~sndrlFHYcfYDWlv~~~r~d~Li~IdspfilpyLkeka~ss------ 967 (1263)
T COG5308 912 ---------------N---SELKCCVYPSAMGSNDRLFHYCFYDWLVFKGRTDRLIKIDSPFILPYLKEKAMSS------ 967 (1263)
T ss_pred ---------------c---ccceecchHhHhccccchhhhhhhhhHhhcCccceEEEeccHHHHHHHHHhcccC------
Confidence 0 1333447999999999999999999999999999999999999999999999876
Q ss_pred cccccccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 000580 1065 VSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNA 1144 (1410)
Q Consensus 1065 ~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~aks~ 1144 (1410)
.+.+||||+||+||++|.+||+|||.||. ++|+++|++|||||+||..-+.|+
T Consensus 968 ----------------------lkIsnLlW~Yy~kre~f~eaa~vLy~LAt-----snfd~sLeeRIE~L~rAngfc~s~ 1020 (1263)
T COG5308 968 ----------------------LKISNLLWKYYVKREDFVEAAQVLYELAT-----SNFDVSLEERIELLRRANGFCSSH 1020 (1263)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCccHHHHHHHHHHhccccccC
Confidence 56899999999999999999999999999 779999999999999996444443
Q ss_pred CCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCCCCCccchhhHHH-HHHH
Q 000580 1145 TNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKI-VREK 1223 (1410)
Q Consensus 1145 ~~~~~~~g~~~~~~~~~fl~~le~kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 1223 (1410)
.+ . +.-+.+..+..++.+++|||-||.+|+.. .+.|+||+.. +++.
T Consensus 1021 ~p-----~-sqk~~~vql~~~v~e~levAsIQdDiL~l---------------------------vr~d~rId~~~r~eL 1067 (1263)
T COG5308 1021 VP-----N-SQKHVNVQLFNEVKERLEVASIQDDILRL---------------------------VRVDPRIDNNKREEL 1067 (1263)
T ss_pred Cc-----c-hhHHHHHHHHHHHHHHhhhhhhHHHHHHH---------------------------hccCCccCchHHHHH
Confidence 32 1 12223456777788888888888887743 3455666666 5699
Q ss_pred HHHhcccCCCHHHHHHHhhccCCchhHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHhc---C----CHHHHHHHHHHh
Q 000580 1224 AKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSK---G----GIAEACSVLKRV 1296 (1410)
Q Consensus 1224 i~~L~~~Ll~it~Lyn~yA~P~~l~E~~L~Il~~s~~~~~~d~~~I~~~W~~ii~~~~~~---~----~~~e~~~~v~~l 1296 (1410)
.++||++++++++||||||||++|+|+||.||+||+| +|.++|+.+|+++++....+ + +.+...+-+..+
T Consensus 1068 ~k~LdG~il~lseLFNdyAdPl~Y~EI~L~Ifkisdy---rd~~vI~~~Weel~~s~~na~~~~vgs~~~esf~s~LsN~ 1144 (1263)
T COG5308 1068 SKQLDGEILSLSELFNDYADPLKYPEIALKIFKISDY---RDKAVIRELWEELMSSHENAIISPVGSSDFESFVSFLSNL 1144 (1263)
T ss_pred HhhcCCeeeeHHHHhhhccccccccceeeEEEeeccc---ccHHHHHHHHHHHHHhhhcccCCCCCcccHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999 69999999999999983221 1 223333344433
Q ss_pred cccccCCCCccccHHHHHHHHHHHHHhhcccccccCCchhHHHHHHHhcCCCchhHHhhhcCCCCCCCCCCCcchhhhcc
Q 000580 1297 GSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQ 1376 (1410)
Q Consensus 1297 g~~~y~~~~~~FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~~l~~Y~~L~~~~~~~~~~~~~~~~~ 1376 (1410)
.-|+..+| .+||+.++.+..+.+.|+. +....|||+++|+.| |++.+.| | |.++.+||.
T Consensus 1145 likiskse-~vFPi~~l~~iv~~~f~dk-----e~aa~gsv~s~fl~A-GvSh~k~-------y------yiL~elie~- 1203 (1263)
T COG5308 1145 LIKISKSE-NVFPIMDLNDIVGDIFCDK-----EMAAGGSVGSAFLSA-GVSHLKV-------Y------YILEELIEQ- 1203 (1263)
T ss_pred hhhhcCCc-ccccHHHHHHHHHHHhcch-----hhhccchHHHHHHhc-chhHHHH-------H------HHHHHHHhc-
Confidence 33444467 9999999999999999982 367899999999999 5775554 4 555556676
Q ss_pred cCccccccccccccccccchhhHHHHHHH
Q 000580 1377 TSGYAFFDQCSWYLESGQCLYLQKEWVQA 1405 (1410)
Q Consensus 1377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1405 (1410)
+....++..+||.||||+||+.
T Consensus 1204 -------s~~~~~~~~KEmtwLikewy~s 1225 (1263)
T COG5308 1204 -------SKDRLFFLIKEMTWLIKEWYHS 1225 (1263)
T ss_pred -------ccchHHHHHHHHHHHHHHHccc
Confidence 5566667779999999999975
No 3
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=100.00 E-value=8.5e-52 Score=500.34 Aligned_cols=402 Identities=30% Similarity=0.432 Sum_probs=187.5
Q ss_pred CCCCcccccccccCCHHHHHHHHhcCCccccccccccccceeEEEEeCeEEEEecC-------CCCCCCccc-cCCCcce
Q 000580 53 EWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFD-------KWDGQCPEY-TGEEQVI 124 (1410)
Q Consensus 53 ~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlFPEI~rAW~tIDn~L~LW~Y~-------~~~~~~~~f-d~~~~~I 124 (1410)
+|.+|.+ .+..+||++|+|+++.+ ++.|.||+||||+|||+++||+||||||. ++.+ +..| ++.++.|
T Consensus 2 ~~~~~~~-~~~~~lP~~v~e~~~~~--~~~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~-~~~~~~~~~~~i 77 (422)
T PF08801_consen 2 KNDPFTV-SKLPPLPDEVFEQLNSA--QSPCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSD-FPLFDDGSSSSI 77 (422)
T ss_dssp ------E-E-SS---HHHHHHHHH---TTS-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEE-EE----------
T ss_pred Cccccce-eecCCCCHHHHHHhhcc--ccceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccc-cceecCCCCCCC
Confidence 4778887 59999999999999999 99999999999999999999999999994 3333 3568 9999999
Q ss_pred EEEEeeccCCC--cccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEE-EEEecCCCCE
Q 000580 125 CAVGLAKSKPG--IFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMT-CITCTDKGRI 201 (1410)
Q Consensus 125 ~aV~LvkPKpg--VF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~-~I~gt~~GRI 201 (1410)
.+|+||+||+| +|.++|+|+|+++|+.+|.|+||+|++ +++++ +++.+.++.+. .|++|++|||
T Consensus 78 ~~v~lv~p~~G~v~f~~~I~~~l~~~t~~~i~l~gv~~~~------------l~~~e-~~~~~~~~~~~~~I~~ts~GRi 144 (422)
T PF08801_consen 78 PGVGLVKPKTGRVVFWESISHLLVLATPSQISLLGVSYSE------------LLSGE-LSTSLTNVEPSGFIVSTSTGRI 144 (422)
T ss_dssp -SEEEEE-TT-EEEEES-TT-TT--EEEE-------------------------------EEEEEEETTTEEEEETT--E
T ss_pred ceEEEEEcCCCCEEecccchhhhhcCccccccccccceee------------ecCCc-eEEECCCCceEEEEEECCCCeE
Confidence 99999999999 999999999999999999999999963 67665 77777655555 5999999999
Q ss_pred EEeecCC--CEEEEEEecCCccccccceeeecc-CccccccccccccccccCCCC-ceEEEEEeCCCceEEEEcCCCeEE
Q 000580 202 LLAGRDG--NIYELLYTTGSGWYKRCRKVCHTA-GVGNVISRWIVPNVFRFGAVD-PIVELVFDNERQLLYARTEEMKLQ 277 (1410)
Q Consensus 202 F~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~-g~~S~~~~~~lPs~~~~~~~d-~Ivqi~vD~sR~iLYtLs~~s~I~ 277 (1410)
|++|.+| ++|||.|+..++ ||+|+||+. ++.+. ++|+ +...+ .|++|++|++|++||+|+++|+|+
T Consensus 145 f~~~~~~~~g~~~l~y~~~~~---~~~~i~~~~~~~~~~----~~p~---~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq 214 (422)
T PF08801_consen 145 FFLGIRDSNGKYELSYQQLSG---RCSKINHTSSSIFSS----LLPS---FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQ 214 (422)
T ss_dssp EEEEE-TTS-EEEEE-TT---------------------------------------EEEEEEETTTTEEEEEESSE-EE
T ss_pred EEEeCCCCCCcEEEEEEcCcC---CccccccccCceecc----ccCC---cccchhceeeEEecCCcCEEEEEeCCCcEE
Confidence 9999966 999999998887 699999997 55344 3776 23444 499999999999999999999999
Q ss_pred EEEeCCCCCCCcceeeeeccccc---ccccccCCccccCcCCCCCCCCCcEEEEEecCccCccceEEEEEecCceEEEEe
Q 000580 278 VFVLGPNGDGPLKKVAEERNLFN---QRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLS 354 (1410)
Q Consensus 278 vY~Lg~~g~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~LVAVT~~G~RlYfs 354 (1410)
+|+|+.+|..+ .+...+...+. +..+.... .++ ......++|++|+||+..|+..++|||+|++|+|+||+
T Consensus 215 ~w~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~----~~~-~~~~~~~~ildi~~i~~~~s~~~~Lva~t~~g~r~y~~ 288 (422)
T PF08801_consen 215 VWDLGPGGSTL-VSKVDIQEIILSSLQSAIPRSA----SSS-DLSSISFKILDIHPISAGESSLLVLVAVTSNGCRLYFS 288 (422)
T ss_dssp EEEE-SS-EEE-EEEEEHHHHHHHHHHHHHHTTS----HHH-HHTT-EEEEEEEEEETTEEEEEEEEE-TTSSS-BEEEE
T ss_pred EEEEeCCCCce-eeehhHHHHHHHHHHHhhhhhh----hcc-cccCCCeEEEEEEEeCccCceeEEEEEeccCCcEEEEE
Confidence 99999866544 32112211111 11111110 000 23457899999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCCCceEEEEEeCCCCCCCCCCCCccccccccCCCCCcccceeeeeEecCCcEEEEecC
Q 000580 355 TSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDAS 434 (1410)
Q Consensus 355 ~~~~~~~s~~~~~~~g~~~~~~~P~~L~lvhVR~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~Ys~G~~l~~~~~ 434 (1410)
+...+ .+|.+|+|+|+|.||..... ....+......+.+++.++|++|+++++...
T Consensus 289 ~~~~~----------------~~p~~L~L~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 344 (422)
T PF08801_consen 289 LTSIS----------------SAPSSLTLIHVRSPPNSFSI--------SSTHPLNSYSSPTTVSSAFYSPGLFLPAPGD 344 (422)
T ss_dssp EEEE------------------------------BTTB--S---------EEEEE-S---B---GG-G---EEE---SSS
T ss_pred Eeeec----------------ccccccceeeeccCCCccee--------ecceecccCCCCccccceEecCCEEEeccCC
Confidence 87531 27999999999887752211 1111122234567788899999999888765
Q ss_pred CCCcceEEEEecCCCCCCCCCCCCCccccccccceeeEEeeccCCeeEEEeecCCCCCcccccccccccccccccccCCC
Q 000580 435 PPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGE 514 (1410)
Q Consensus 435 ~~~~d~L~~~s~d~~~~~~~~~~~~~~~~~~~~l~E~~~~~~l~g~~~~i~~v~~~p~~~~~~~~l~~~~e~~~~~~~~~ 514 (1410)
.. +.+|..+.+..................+...|.+..++.+-. +++. +.|
T Consensus 345 ~~--~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~Ed~i~l~~~~~-----------------------~~i~---~~~- 395 (422)
T PF08801_consen 345 TA--FVVFVSAVVMGFLDSSTSQSLVDSSYLPRLWEDAIRLRSDDD-----------------------VEII---GSG- 395 (422)
T ss_dssp SE--SEEEEEE-TT---TT----------------EEEE--G--GG-------------------------EE---EEE-
T ss_pred CC--EEEEEcCCccccCCCCCccccccccccccccceEEEccCccc-----------------------ceee---ccc-
Confidence 43 578888877763221110000001112334555555443310 0000 001
Q ss_pred cccccCCccccCCcccccccCCCce-EEEEcCCceEE
Q 000580 515 SCEKSSGKLWARGDLSTQHILPRRR-IVVFSTMGMME 550 (1410)
Q Consensus 515 ~~~k~~p~~~~~nela~Q~~~ppr~-f~vLTn~Gi~i 550 (1410)
+. +.+++||..||++ |+++||+|+++
T Consensus 396 ---------~~-~~~~~q~~~~~~~~~~~l~~~Gv~~ 422 (422)
T PF08801_consen 396 ---------TE-NPLASQHDHPPPACFLLLTNFGVHR 422 (422)
T ss_dssp ---------E-----------ETTEEEEEETTTEEE-
T ss_pred ---------cc-ccccccccCCCCCEEEEEcCccccC
Confidence 11 2399999999998 99999999985
No 4
>PF03177 Nucleoporin_C: Non-repetitive/WGA-negative nucleoporin C-terminal; InterPro: IPR007187 This is the C-terminal half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterised by the FG repeat and the other is represented by this family, which lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ].; PDB: 3I5P_A 3I5Q_B 3I4R_B 3CQC_B 3CQG_B 3KFO_A.
Probab=100.00 E-value=3.1e-48 Score=487.77 Aligned_cols=517 Identities=28% Similarity=0.304 Sum_probs=339.1
Q ss_pred EecChhHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCCCccccCCCCC-CCCCchhhhhhccccccccCCCCCcc
Q 000580 694 CRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGAD-SVAGDQSLIRNLFGSYSRNADSNGAG 772 (1410)
Q Consensus 694 ~~~s~~~l~~~~~~L~~L~~Fl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1410)
+.....+|+..+..|..|.+||+.|+...++.. +|. ........ ..++..
T Consensus 2 ~~~~~~~L~~r~~~l~~L~~Fl~~~~~~~~~~~-----------------~~~~~~~~~~~~------------l~~e~E 52 (586)
T PF03177_consen 2 SNSLEQQLEDRQKRLQNLIEFLKRNGPLIRLTS-----------------GPRSLSRQTRWA------------LLEEAE 52 (586)
T ss_dssp ----SHHHHHHHHHTTSSSHHHHTT-------------------------SS---------H------------HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCcccccc-----------------CcccCCHHHHHH------------HHHHHH
Confidence 345677999999999999999998765433221 010 00000000 000111
Q ss_pred cchhhhcCCCChHH-HHHHH-HHhhhc-----------HHHHHhhcCH-HHHHHhhhcccccccc-----CchhhHHHHH
Q 000580 773 TSNKRQRLPYSPAE-LAAIE-LLSQHH-----------VTRLVQGFDA-NLRQELVQLTFCQLVC-----SEEGDRLATR 833 (1410)
Q Consensus 773 ~~~~~q~l~~~~~e-~~~~e-iL~e~~-----------~~~I~~~l~~-~~q~~L~~ltF~dLv~-----~~~g~~l~k~ 833 (1410)
..+..+.+...+.| ...+. ++++|+ +..+..+++. +.+..|..++|++|++ +..|+.+++.
T Consensus 53 kl~a~~~L~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 132 (586)
T PF03177_consen 53 KLAAAIALWKRQNEALSLWQRLLSDHQKARINTSQSEDDTVRDFFLSDVSRIEELFPLLFEDLKTPLSSSSSSGKVLAKL 132 (586)
T ss_dssp HHHHHTTTTTS---TTHHHHHHHHH-HTTS----SS--S---HHHHTT-GGGTSSTTTTSSSSSSSS-------TTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 11111222222223 12334 777765 8888888877 9999999999999999 4358999999
Q ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhHhhHHHHHHHhhcCC--ChHH-HHHHHHHHHHHHhhCCCCC
Q 000580 834 LISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTS--DSEE-KENLAREAFNFLSKVPESA 910 (1410)
Q Consensus 834 Li~aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~--~~~e-r~~~L~eAL~Lf~kv~~~~ 910 (1410)
|+.++|+.++..++..+++.++..|+.+||+||+.+|+++|||.|.+..|+... +... ++.++++|+++|+++++++
T Consensus 133 l~~~~i~~~i~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~a~e~~w~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 212 (586)
T PF03177_consen 133 LIASLIYLAILENAFKYRDYNSEQLQLRCPSFFSLEDVLCYKAEELPWTARTALLSSLEDLFEQLLNEALRLFEKWAESI 212 (586)
T ss_dssp HHHHHHHHHTTHHHHTTTT------------------HHHHHHHHHHHHHHH------HCTHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcCCccHHHHHHHHHhhHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999986522389999999999999999999999999999999999886 4555 8899999999999999998
Q ss_pred CHHHH---HHHHHhcCchHHHHHHHHHHHHhc-CCCCCcccC----CcchhH---HH---HHHHHHHHHHHHHHHHHHhh
Q 000580 911 DLRTV---CRRFEDLRFYEAVVRLPLQKAQAL-DPAGDAFND----QIDAAT---RE---YALVQRQQCYEIITSALRSL 976 (1410)
Q Consensus 911 ~L~~v---c~~~~~l~fy~GvVeL~L~~A~~~-Dp~~~al~~----~~~~~~---r~---~~~~~R~~cY~~I~~~L~~l 976 (1410)
+++.+ |.+|.+++||.|+|+|||.+|++. ||.+.+... .+.++. |. ..|.+|..||+.++++++++
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~v~l~l~~a~~~~d~~~~~~~~~~~~~~~~~~~~~r~~~i~~l~~r~~~~~~a~~lae~~ 292 (586)
T PF03177_consen 213 PLENLQEACQQFISLQYYEGVVELLLYFARKLWDPMQEALSYYEEGELEEDYESQRPEWIEALAKRIGCYEEAFELAEKY 292 (586)
T ss_dssp HHCCCCCCCCHHHHCCHCCCHHHHHHHHHHHHHHHCTCHHCCCHHTTCCCCCHHTTCTTSCCHHHHHCHCCCHHHHHHHT
T ss_pred CchhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccchhhHHhhcHHhhhhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 76665 999999999999999999999999 999988642 222222 22 35899999999999999998
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHc---CCccccccccCCChHHHHhh
Q 000580 977 KGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDL---GLENELLEYGGPDLVPFLQS 1053 (1410)
Q Consensus 977 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~---~~~d~LLei~sPfLe~yL~~ 1053 (1410)
.+-..... .+. .......+.....++++..+..++|+.||++||+|||++ |...+|++..+|||++||++
T Consensus 293 ~d~~~lv~-----~~~--~~~~~~~~~~~~~~~~~~y~~~~~d~~Fa~~Ly~wyi~~~~~~~l~~l~~~~~~~L~~fL~~ 365 (586)
T PF03177_consen 293 HDFSSLVE-----LCP--DNQLDSLEASEIKERIYQYFEKFGDELFAFFLYDWYIENGKIGKLLELLEIYSPFLERFLRR 365 (586)
T ss_dssp S--HHHHH-----HH----------HHHSS-TTCHHHHCCS-SCHHHHHCHHHHHHT---T-GGGGGG--GCCCHHHHHC
T ss_pred hhhhhhhh-----hhh--cccccccchhHHHHHHHHHHHHCCchHHHHHHHHHHHHhccchHHHhhcccCCHHHHHHHHH
Confidence 64211000 000 011222333444556788899999999999999999999 99999999999999999999
Q ss_pred cCCCchhhhhhcccccccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHH
Q 000580 1054 AGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQY 1133 (1410)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeY 1133 (1410)
+.. ++.||+|+||.++++|.+||++|.+||.+++.+..++ +++|++|
T Consensus 366 ~~~-------------------------------~~~~L~Wi~~~~~~~y~~AA~~L~~lA~~~~~~~~~~--~~~r~~l 412 (586)
T PF03177_consen 366 NPK-------------------------------KYPDLLWIYYIRNGQYSKAAETLLQLAQREADSVSFP--LEKRIEL 412 (586)
T ss_dssp --T--------------------------------HCCCHHCHHHHTTSHHHHHHHHHHHHHH-HSSHSS---HHHHHHH
T ss_pred HHh-------------------------------hcCCcchHHHHhccCHHHHHHHHHHHHhhhccccchh--hHHHHHH
Confidence 752 3689999999999999999999999999876521222 9999999
Q ss_pred HHHHHHHhhhcCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHH-HHHHHHhcccccccccccccCCCCCCCCCcc
Q 000580 1134 LSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKD-ELEAIASSLETSVDMSESTQNGSAPDSSSTT 1212 (1410)
Q Consensus 1134 LsrAv~~aks~~~~~~~~g~~~~~~~~~fl~~le~kleVaqiQ~~I~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1212 (1410)
+.+|++++++.. + + ++.+.+++++++++|+|+++|.+|.+ .+..+... ....
T Consensus 413 s~~kL~~~a~~~-~----~---~~~~~~~l~~i~~~L~v~~iQ~~l~~~~~~~~~~~-------------------~~~~ 465 (586)
T PF03177_consen 413 SLAKLAALASSE-S----D---SPEDQELLEEIEDELDVIRIQERLYEELLEAISSA-------------------IISD 465 (586)
T ss_dssp HHHHHHHHHS---H----H----H-HHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTC----------------------G
T ss_pred HHHHHHHhhccc-c----C---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------------cccc
Confidence 999999998875 1 0 01167899999999999999999998 44332110 0010
Q ss_pred chhhHHHHHHHHHHhcccCCCHHHHHHHhhccCCchh------------------HHHHhhhhcCCCCCCChhHHHHHHH
Q 000580 1213 DANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWE------------------ICLEMLYFANYTGDADSSIIRETWA 1274 (1410)
Q Consensus 1213 d~~~~~~~~~~i~~L~~~Ll~it~Lyn~yA~P~~l~E------------------~~L~Il~~s~~~~~~d~~~I~~~W~ 1274 (1410)
. ...++++++|+++ ++++||++||.|+++|+ +||.+.+++++ ++..+|+.+|.
T Consensus 466 ~----~~~~~~l~~L~~~--~~~~l~~~~~~~~~~lidlltl~~~~~~f~~AL~vl~l~~~~~~~~---~~~~l~~~iW~ 536 (586)
T PF03177_consen 466 Q----PAKQEALKQLDGD--DLTQLYNNYALPPELLIDLLTLIDNSEDFYKALKVLSLAINHCSDE---RDESLIRLIWR 536 (586)
T ss_dssp H----HHCCHHHHHHHHC--HHHHHHSSTTTTHHHHHHHCTTCTSCCHHHHHCCCHHHHHHHCTCH---HHHHHHHHHHH
T ss_pred c----hhHHHHHHHhccc--chhhHhhccCCCHHHHHHHhhhhhhhhhhhhHHHHHHHhhcccccc---chHHHHHHHHH
Confidence 0 0135899999999 99999999999999999 99999999999 69999999999
Q ss_pred HHHHHHHhc----C-C----HHHHHHHHHHhcccccCCCCccccHHHHHHH
Q 000580 1275 RLIDQALSK----G-G----IAEACSVLKRVGSHMYPGDGAVLPLDTLCLH 1316 (1410)
Q Consensus 1275 ~ii~~~~~~----~-~----~~e~~~~v~~lg~~~y~~~~~~FPl~~lv~~ 1316 (1410)
++|.+..+. . . ......+...|++.+++.. .+||+++++++
T Consensus 537 r~l~~ddW~~~~~~~~~~d~~~~~~~~~t~L~~~l~~~~-~~~~~~~~~~~ 586 (586)
T PF03177_consen 537 RLLLRDDWAAINNTSDKSDEQIELSLKNTALFKTLSSSE-NDFPLEFIIPH 586 (586)
T ss_dssp HHHHHHT-HHTSTTS-HHHHHHHHHHHHHCHHHHHTT-T-TTS-HHHHHH-
T ss_pred HHHHhhhhHhhcccCcCccHHHHHHHHHHHHHHHHHhCC-CcCCHHHhcCC
Confidence 999996421 1 1 2233568889998888777 99999999985
No 5
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0022 Score=82.16 Aligned_cols=243 Identities=20% Similarity=0.188 Sum_probs=153.0
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 000580 913 RTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPA 992 (1410)
Q Consensus 913 ~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~p~~~~ 992 (1410)
++-.+-+.++++|+.++++|=.. .=|+-...+++.+|++.
T Consensus 776 rdwlq~L~~vg~~e~Ai~iAEKY----------------------------~DfqsLV~lcdqld~kd------------ 815 (1128)
T KOG4121|consen 776 RDWLQVLCKVGQYEQAIQIAEKY----------------------------KDFQSLVQLCDQLDQKD------------ 815 (1128)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh----------------------------hhHHHHHHHHHhhCchh------------
Confidence 34566677889999998865221 11666777777776421
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCccccccccC---CChHHHHhhcCCCchhhhhhccccc
Q 000580 993 GPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGG---PDLVPFLQSAGREPIQEVRAVSGIT 1069 (1410)
Q Consensus 993 ~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~~~d~LLei~s---PfLe~yL~~~~~~~~~~~~~~~~~~ 1069 (1410)
.+ +-|...++--++-|-..||+|++++|...+||.-.- -.|-.|++++
T Consensus 816 ----rL----------q~y~~~~~e~~~eFs~~lf~y~ve~~k~~eLl~~f~~~~s~L~qFf~~~--------------- 866 (1128)
T KOG4121|consen 816 ----RL----------QDYETFFNEYPKEFSFFLFEYLVEHGKLGELLFRFPQQHSVLIQFFQER--------------- 866 (1128)
T ss_pred ----HH----------HHHHHHHHhhhHHHHHHHHHHHHhhchHHHHHhcchhhHHHHHHHHhhc---------------
Confidence 11 125556666668899999999999999999996432 2455666653
Q ss_pred ccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCC
Q 000580 1070 SAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDS 1149 (1410)
Q Consensus 1070 ~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~aks~~~~~~ 1149 (1410)
+|-.|.|-.-..+|+|.+|+++|++||...+. -+.+.+.-|+.|.+.
T Consensus 867 ------------------d~~~lsWi~ei~nGdy~rAs~~L~~la~~e~k------~vakK~s~LsLaKL~--------- 913 (1128)
T KOG4121|consen 867 ------------------DYGHLSWIQEILNGDYERASNTLLNLAVDEEK------KVAKKESHLSLAKLA--------- 913 (1128)
T ss_pred ------------------cccccHHHHHHhcCcHHHHHHHHHHhcchHHH------HHhhHHHHhhHHHHH---------
Confidence 26789999999999999999999999995432 377788888888642
Q ss_pred ccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHH---hcccccccccccccCCCCCCCCCccchhhHHHHHHHHHH
Q 000580 1150 LVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIA---SSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKE 1226 (1410)
Q Consensus 1150 ~~g~~~~~~~~~fl~~le~kleVaqiQ~~I~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 1226 (1410)
.+..++|++|+.++||++..+ +.-+- +.++. ...-++++... .+.. +.+ +=.++++
T Consensus 914 -----------s~a~~~ee~l~~~~Iqki~a~-~~~Vd~~q~q~~k-~qlv~s~~~nl---s~~s----i~~-Vl~~vee 972 (1128)
T KOG4121|consen 914 -----------SLAVEIEENLLILTIQKIQAN-LDLVDAEQSQGNK-EQLVESICKNL---SNGS----IRP-VLNLVEE 972 (1128)
T ss_pred -----------HHhhhhhhhHHHHHHHHHHhc-ccHHHHHHhhccH-HHHHHHHhcCc---ccch----hhH-HHHHHHH
Confidence 245568999999999988554 22111 11000 00001111110 0000 000 1111222
Q ss_pred -hcccCCCHHHHHHHhhccCCchhHHHHhhhhcCCCCC-CChhHHHHHHHHHHHH
Q 000580 1227 -LSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGD-ADSSIIRETWARLIDQ 1279 (1410)
Q Consensus 1227 -L~~~Ll~it~Lyn~yA~P~~l~E~~L~Il~~s~~~~~-~d~~~I~~~W~~ii~~ 1279 (1410)
....+-..++|-++|- -+.+-|+.|.-+...++.++ +=.+++...|.+++-+
T Consensus 973 lIs~~v~e~~e~ve~~s-f~~~r~~al~~le~~~~~~~~~l~dd~~k~l~~~v~R 1026 (1128)
T KOG4121|consen 973 LISLYVVELNELVEEYS-FLDDREKALIELELLDEDLNRLLNDDVKKFLCALVWR 1026 (1128)
T ss_pred HHhHhhhhHHHHHHHHh-hhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 2456777888887665 46778888888888877211 0145677777777665
No 6
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00029 Score=92.23 Aligned_cols=179 Identities=14% Similarity=0.040 Sum_probs=117.5
Q ss_pred cccceeeeeEecCCcEEEEecCCCCcceEEEEecCCCCCCCCCCCCCccccccccceeeEEeeccCCeeEEEeecCCCCC
Q 000580 413 DISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPD 492 (1410)
Q Consensus 413 ~~~~~v~~a~Ys~G~~l~~~~~~~~~d~L~~~s~d~~~~~~~~~~~~~~~~~~~~l~E~~~~~~l~g~~~~i~~v~~~p~ 492 (1410)
..|.+|+...+++|...++...++++..++|+...+....-+ ...|+..+....+..|..... .+
T Consensus 369 p~pl~v~~~~~~~~~t~~a~t~~~~~~~~~~~~~~t~~~~~~------------~k~~~~lt~~~~~~~~~~s~~---~~ 433 (1311)
T KOG1900|consen 369 PPPLQVQNVRSSKGYTPAASTINSDNIELICVAKRTVLLLTL------------SKSSSSLTAIALVESVLLSCR---SD 433 (1311)
T ss_pred CCCceeeeeeccCCccccceeecCCCceEEEEcccchhcccc------------cccccceEeecccceeeeccc---cc
Confidence 357889999999999999888888888999988776532110 111101100011111221110 00
Q ss_pred cccccccccccccccccccCCCcccccCCccccCCcccccccCCCceEEEEcCCceEEEEEcChHHHHHHHHhccCC--h
Q 000580 493 TATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSP--R 570 (1410)
Q Consensus 493 ~~~~~~~l~~~~e~~~~~~~~~~~~k~~p~~~~~nela~Q~~~ppr~f~vLTn~Gi~i~~~~RPvDiL~~LL~~~~~--~ 570 (1410)
......+.|.+++ ++.+.+....+.-+ .||++++.||++|++.....|+||.|++.+.+..+ .
T Consensus 434 ~l~~s~~~~g~~~-------------~~~~~~e~~~~~e~--~~~~~~i~lt~q~~~~~~~~~~v~~l~~~~~s~~~~~~ 498 (1311)
T KOG1900|consen 434 ELFVSAPDYGELK-------------THGPYTEQPASVED--VPPKEIILLTNQDIYTSAPLRYVNVLASQYLSEPGKDA 498 (1311)
T ss_pred ceeeeccchhhhh-------------hcccccccccchhc--cCccceeeeecchhhhhhhhhhHHHHHHHHhcCCchhh
Confidence 0011111122111 12222222333333 89999999999999999999999999998887766 6
Q ss_pred hHHHHHHHHhChHHHHHHHHHHHcCcccCccccCHHHHHHHHHhccCCCCCCCcccc
Q 000580 571 SILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLE 627 (1410)
Q Consensus 571 ~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~s~~v~~~A~~af~~~~~~g~p~~~ 627 (1410)
+..+.||+.|-..++|.+++.++| ++...+..+.-|++.+|. +|++.++.+
T Consensus 499 ~~t~~~~~~~~~R~~~~v~~~li~----~~~~~~~~v~~~~~l~~~--~y~~~~~~~ 549 (1311)
T KOG1900|consen 499 ELTERSIYLYRYRRPIVVFLSLIK----MPLPFARYVDIWEALATA--LYGRELYEK 549 (1311)
T ss_pred hhccceeEEEeeccHhHHHHHHhc----CCCcccCchHHHHHHHHH--hhcchhhhh
Confidence 789999999999999999999999 666666777778888886 466777654
No 7
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.61 Score=61.51 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=97.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 000580 914 TVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAG 993 (1410)
Q Consensus 914 ~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~p~~~~~ 993 (1410)
.|++.|.+-+--++|++|+-.+-+.+|+++.. .. -.|.+||+-.-.+-
T Consensus 988 kv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps----------~a------~~~t~vFnhhldlg---------------- 1035 (1480)
T KOG4521|consen 988 KVVRLLEEHNHAEEVCQLAVKAIENLPDDNPS----------VA------LISTTVFNHHLDLG---------------- 1035 (1480)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcchh----------HH------HHHHHHHHhhhchh----------------
Confidence 47777777888888888888777777665532 11 12445554322111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHcCCccccccccCCCh------HHHHhhcCCCchhhhh
Q 000580 994 PRSALDPASRKKYICQIVQLGVQSPDR----IFHEYLYRTMIDLGLENELLEYGGPDL------VPFLQSAGREPIQEVR 1063 (1410)
Q Consensus 994 ~~~~~~~~~~~~~~~~i~~~al~S~De----lFH~~LYdWLi~~~~~d~LLei~sPfL------e~yL~~~~~~~~~~~~ 1063 (1410)
+..++|...++-.|+ .....|---|.+.|-..-|-+ =||+ |.||.+++..+
T Consensus 1036 ------------h~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~--fpfigl~~eve~~l~esaaRs----- 1096 (1480)
T KOG4521|consen 1036 ------------HWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALAT--FPFIGLEQEVEDFLRESAARS----- 1096 (1480)
T ss_pred ------------hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhh--CCccchHHHHHHHHHHHHhhc-----
Confidence 111223333333332 112223334556666666655 4664 58888765442
Q ss_pred hcccccccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCC-CHHHHHHHHHHHHHH
Q 000580 1064 AVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAP-TLDQRRQYLSNAILQ 1140 (1410)
Q Consensus 1064 ~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i-~L~~RIeYLsrAv~~ 1140 (1410)
+ .-.+-.+++||.-||.+|+||-+||-+.|.-|+|=..++.... -|++|...|.-|..|
T Consensus 1097 -~-----------------~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~ncllaaLNc 1156 (1480)
T KOG4521|consen 1097 -S-----------------PSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRRNCLLAALNC 1156 (1480)
T ss_pred -C-----------------ccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhhhHHHHHHHH
Confidence 1 2244668999999999999999999999999997654333333 699999999976544
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.79 E-value=0.84 Score=49.88 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=88.5
Q ss_pred cccccccccceeEEEE--eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeee
Q 000580 83 ALCGIFPEIRRAWASV--DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCC 160 (1410)
Q Consensus 83 ~~mGlFPEI~rAW~tI--Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~ 160 (1410)
+.+-+.|. ++-.++- |+.+++||...+... ..+......|.++...+ +=+++++.++...|.++-+..
T Consensus 139 ~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~--------~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 139 NSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSP--------DGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEEcCc-CCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECC--------CcCEEEEecCCCcEEEEECCC
Confidence 34445555 4444443 899999999754433 34555455666666532 123445555555555554321
Q ss_pred cCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceeeeccCcccccc
Q 000580 161 SGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVIS 239 (1410)
Q Consensus 161 ~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~ 239 (1410)
. ..+..+ . ...-.++++.-+++|++|.++. ||.|+-..... ......
T Consensus 209 ~---------~~~~~~-----~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--------------~~~~~~-- 256 (289)
T cd00200 209 G---------KCLGTL-----R--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--------------GECVQT-- 256 (289)
T ss_pred C---------ceecch-----h--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--------------ceeEEE--
Confidence 0 111111 1 1122577788788899999998 99776555321 000011
Q ss_pred ccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000580 240 RWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 240 ~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~ 280 (1410)
++ .....|..+.+++..+.|++-+.++.|.+|+
T Consensus 257 ---~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 ---LS-----GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---cc-----ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 11 3456789999999999999999999999995
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.32 E-value=3.2 Score=45.29 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=88.9
Q ss_pred cccccccccceeEEEE-eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeec
Q 000580 83 ALCGIFPEIRRAWASV-DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCS 161 (1410)
Q Consensus 83 ~~mGlFPEI~rAW~tI-Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~ 161 (1410)
+.+-+-|.=++....- |+.+++||+..+... ..+.+....|..+..... =+++++.+..-.|.++-+.-.
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~--------~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASAD--------GTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCC--------CCEEEEEcCCCeEEEEEcCcc
Confidence 3444555534444433 899999999764422 233344445544443321 145555555666666654211
Q ss_pred CCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccc
Q 000580 162 GAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISR 240 (1410)
Q Consensus 162 ~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~ 240 (1410)
..+ .......-.+.++.-+++|+++++|. ||.|+-..... ......
T Consensus 84 ---------~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~--- 130 (289)
T cd00200 84 ---------ECV-------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--------------GKCLTT--- 130 (289)
T ss_pred ---------cce-------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--------------cEEEEE---
Confidence 011 12222333678888888899999888 99776544221 000000
Q ss_pred cccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 241 WIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 241 ~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
++ ...+.|..+.+++..++|++-+.++.|.+|++.
T Consensus 131 --~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 131 --LR-----GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred --ec-----cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 11 245678899999998999999889999999985
No 10
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.76 E-value=1.2 Score=56.76 Aligned_cols=178 Identities=15% Similarity=0.248 Sum_probs=70.7
Q ss_pred eCeEEEEecCCCCCCCccccCCCcce----EEEEeeccCC-----Cc-ccccce-EEEEEeccceEEEEEeeecCC----
Q 000580 99 DNSLFLWRFDKWDGQCPEYTGEEQVI----CAVGLAKSKP-----GI-FVEAIQ-YLLILATPVELILVGVCCSGA---- 163 (1410)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I----~aV~LvkPKp-----gV-F~~~I~-~lLvvaT~~~I~Llgv~~~~~---- 163 (1410)
-++.++|+.-+..+. .+..+.+-.+ ..|-+.-|.+ || |.+.-. .++|++|+...+++-+.+...
T Consensus 43 ~~r~i~WRvl~~~~~-LeL~~~s~~~~~~~~~lri~Fp~~~~~~~~v~~~~~~~~~~~v~v~t~s~~~~~l~l~~~~~~~ 121 (547)
T PF11715_consen 43 RNRFILWRVLNDGDV-LELREVSLDKNLLNNTLRIHFPSPIILPGCVAFSETEDHVLIVFVTTSSGHLYTLTLPSDFFRS 121 (547)
T ss_dssp -------------------------------EEEEE-SS-BTT-GGGGEEEEE-SEEEEEEEBTTS-EEEEEEEHHHHHS
T ss_pred ccccccccccccccc-cccccccccccccCCeEEEECCCcCeeCCeEEEEECCCCEEEEEEEeCCCEEEEEECCChhhcc
Confidence 367899997532222 2333322222 4455543332 34 445454 788888999988888887531
Q ss_pred -CCCCC-CCceeEEeeCCCeEeecCCeeEEEEEec-CCCCEEEeecCCCEEEEEEec----CCccccccceeeec-cCcc
Q 000580 164 -GDGTD-PYAEISLQPLPEYTVPSDGVTMTCITCT-DKGRILLAGRDGNIYELLYTT----GSGWYKRCRKVCHT-AGVG 235 (1410)
Q Consensus 164 -~~~~~-~~~~l~L~~~~~~sv~tdg~~v~~I~gt-~~GRIF~gG~DG~lyEl~Y~~----~~~Wf~rc~kinht-~g~~ 235 (1410)
.+... ...+-.-+..| +..++.......-+.+ +.+.++.+..||-|.-|.-.. +..|. ..-.. .++.
T Consensus 122 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~----~~~~~~~~~~ 196 (547)
T PF11715_consen 122 FSDLSEDNFEDWCRSYVP-YSFSFRSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWS----EELFNDSSWL 196 (547)
T ss_dssp ---S---S--S-EE-B-S-S-TTTS-EEEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE--------STHHHH
T ss_pred ccccccccccCccEeeeC-CCCCccCCCeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeE----EEEeCCCchh
Confidence 11110 01121111122 2333332222111111 457777888899888888664 33462 11111 1222
Q ss_pred cccccccccccc--ccCCCCceEEEEEeC----CCceEEEEcCCCeEEEEEeCC
Q 000580 236 NVISRWIVPNVF--RFGAVDPIVELVFDN----ERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 236 S~~~~~~lPs~~--~~~~~d~Ivqi~vD~----sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
..+.+ ++|... ..........+.++. .+.+|+||+.++++|+|++..
T Consensus 197 ~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t 249 (547)
T PF11715_consen 197 RSLSG-LFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET 249 (547)
T ss_dssp HCCTT-TS-TT---SSSS---EEEEEE-----ETTTEEEEEETTSEEEEEETTT
T ss_pred hhhhC-cCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCCCeEEEEECCC
Confidence 22111 144321 112344566677777 889999999999999999964
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.38 E-value=0.62 Score=58.94 Aligned_cols=142 Identities=23% Similarity=0.351 Sum_probs=99.4
Q ss_pred EEeCeEEEEecCCCCCCC---ccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCcee
Q 000580 97 SVDNSLFLWRFDKWDGQC---PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEI 173 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~---~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l 173 (1410)
+=||+..||+|+++.... +-+.|..++|.+|++.+=++-.| +-+++.-.|.+-++--++... ..+
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff-------vsvS~D~tlK~W~l~~s~~~~-----~~~ 451 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF-------VSVSQDCTLKLWDLPKSKETA-----FPI 451 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE-------EEecCCceEEEecCCCccccc-----ccc
Confidence 348999999996544322 45678899999999987777666 667788788877765432111 112
Q ss_pred EEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCcccccccee----eeccCccccccccccccc
Q 000580 174 SLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKV----CHTAGVGNVISRWIVPNV 246 (1410)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~ki----nht~g~~S~~~~~~lPs~ 246 (1410)
. +... ++.-.++-.|+++.-.++.-+|..|+ |- -||.+. | |+.. +|+.|+.++
T Consensus 452 ~-~~~~-~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~--------~~l~~vLsGH~RGvw~V--------- 511 (775)
T KOG0319|consen 452 V-LTCR-YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-Q--------LRLLGVLSGHTRGVWCV--------- 511 (775)
T ss_pred e-ehhh-HHHHhhcccccceEecCCCceEEecccccceeeeccc-C--------ceEEEEeeCCccceEEE---------
Confidence 2 2222 45556778999999999999999987 65 677766 2 4432 678887766
Q ss_pred cccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 247 FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 247 ~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
+|++. -++|-|=|.+.||++|.|.
T Consensus 512 -~Fs~~-----------dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 512 -SFSKN-----------DQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred -Eeccc-----------cceeEeccCCceEEEEEec
Confidence 23332 3578899999999999995
No 12
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.70 E-value=2.4 Score=51.42 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=53.4
Q ss_pred eeEEEEEecCCCCEEEeec-CCC--EEEEEEecCCccccccceeeeccCcccccccccccc-ccccCCCCceEEEEEeCC
Q 000580 188 VTMTCITCTDKGRILLAGR-DGN--IYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPN-VFRFGAVDPIVELVFDNE 263 (1410)
Q Consensus 188 ~~v~~I~gt~~GRIF~gG~-DG~--lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs-~~~~~~~d~Ivqi~vD~s 263 (1410)
-.||||+-|+||-.|+.|. ||. +|-+.- .+.-.... +. .|- .|. ...=+|.+|.|+..
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----------lv~a~~~~-~~-----~p~~~f~-~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----------LVSADNDH-SV-----KPLHIFS-DHTLSITDLQIGSG 185 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEe-----------ecccccCC-Cc-----cceeeec-cCcceeEEEEecCC
Confidence 3689999999999888776 995 444442 11111100 22 332 121 34567999999886
Q ss_pred --CceEEEEcCCCeEEEEEeCC
Q 000580 264 --RQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 264 --R~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+..|||-|++.+|++|||..
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred CccceEEEecCCceEEEEEecc
Confidence 89999999999999999963
No 13
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.93 E-value=8.9 Score=51.33 Aligned_cols=156 Identities=11% Similarity=0.086 Sum_probs=87.3
Q ss_pred EEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeE
Q 000580 95 WASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 95 W~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
-.+-|+.+++||..++......+.+-...|.+|.... -++++..++...|.|.-+........ ...+.
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~---------~~~lvs~s~D~~ikiWd~~~~~~~~~---~~~l~ 702 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD---------SSTLVSSSTDNTLKLWDLSMSISGIN---ETPLH 702 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC---------CCEEEEEECCCEEEEEeCCCCccccC---CcceE
Confidence 3456899999999865422234556667888887742 13455555566677776532110000 01121
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCC-ccccccceeeeccCccccccccccccccccCCC
Q 000580 175 LQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGS-GWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1410)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~-~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~ 252 (1410)
+..-....++++.-+.+|+.+.+|. ||.|+-....... -| ..+..+.. . ++..-.....
T Consensus 703 -------~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~---s~~~~~~~----~-----~~~~~~~~~~ 763 (793)
T PLN00181 703 -------SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL---SYKFKTID----P-----VSGLEVDDAS 763 (793)
T ss_pred -------EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE---EEecccCC----c-----ccccccCCCC
Confidence 1111223455666677788777775 8865544322110 01 00000000 0 1111111345
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEEe
Q 000580 253 DPIVELVFDNERQLLYARTEEMKLQVFVL 281 (1410)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vY~L 281 (1410)
+.|..++.++.-+.|.+-+.+|+|++|+|
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 67999999999999999999999999997
No 14
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.76 E-value=16 Score=44.35 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=104.8
Q ss_pred cccccccccc-cceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccccc-ceEEEEEe--cc------
Q 000580 81 GNALCGIFPE-IRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEA-IQYLLILA--TP------ 150 (1410)
Q Consensus 81 ~~~~mGlFPE-I~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~-I~~lLvva--T~------ 150 (1410)
..|.|-+.|+ =.-.---+|....+.|+..+. ....|.|-.-.|++|...+----|+... ..++=|-. +.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3455666665 112233467789999997543 3478999899999998877665555543 12111111 00
Q ss_pred --ceEEEEEeeecCCCC-----CCCCCceeEEeeCC-CeEe---ecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEe
Q 000580 151 --VELILVGVCCSGAGD-----GTDPYAEISLQPLP-EYTV---PSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYT 216 (1410)
Q Consensus 151 --~~I~Llgv~~~~~~~-----~~~~~~~l~L~~~~-~~sv---~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~ 216 (1410)
.+--+-+++...+++ .++++=-.+.+.+. .+++ .+.++.+++.+-++||=||-.|. || .||++.=+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 111122333322211 01111011222111 1222 23457899999999999999987 98 67777633
Q ss_pred cCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000580 217 TGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 217 ~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
. .... .| +...+|..|.+-+..-.|-|=++++.|..|||-+.
T Consensus 380 ~---------------~~a~------Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 380 T---------------NVAK------FP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred c---------------cccc------CC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 1 1111 12 46788999999999999999999999999999543
No 15
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.73 E-value=6.2 Score=48.08 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=63.9
Q ss_pred eEeecCCeeEEEEEecCCCC-EEEeecCCCEEEEEEecCCccc-cccceeeeccCccccccccccccccccCCCCceEEE
Q 000580 181 YTVPSDGVTMTCITCTDKGR-ILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVEL 258 (1410)
Q Consensus 181 ~sv~tdg~~v~~I~gt~~GR-IF~gG~DG~lyEl~Y~~~~~Wf-~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi 258 (1410)
.++.+| ..+++++-.+-+| +|.|+++|+||-..|.+-.|.. +=-.|.-|-.+.. ++.+..-....+|.-+
T Consensus 212 lti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~-------~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 212 LTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ-------INVLVGHENESAITCL 283 (476)
T ss_pred EEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccce-------eeeeccccCCcceeEE
Confidence 566666 5677777777555 5555569999999998777643 1112333322211 2222121233489999
Q ss_pred EEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 259 VFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 259 ~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+|--.-.+|-+=+++|++.|||+.+
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecch
Confidence 9999999999999999999999975
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.88 E-value=6.3 Score=44.79 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=104.1
Q ss_pred eeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCce
Q 000580 93 RAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAE 172 (1410)
Q Consensus 93 rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~ 172 (1410)
.+=..-|.++-+|--..|..- -.+.-.+.-+-+.-|- |. ++.|+.|--..|-|+-|.-++
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~-rTiqh~dsqVNrLeiT-pd--------k~~LAaa~~qhvRlyD~~S~n---------- 72 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICS-RTIQHPDSQVNRLEIT-PD--------KKDLAAAGNQHVRLYDLNSNN---------- 72 (311)
T ss_pred EEeccCcceeeeeehhcCeEE-EEEecCccceeeEEEc-CC--------cchhhhccCCeeEEEEccCCC----------
Confidence 344567899999987654321 1122122222222221 21 345677777778888775432
Q ss_pred eEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccccccceeeeccCcccccccccccccccc
Q 000580 173 ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRF 249 (1410)
Q Consensus 173 l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~ 249 (1410)
|.|.++.....-.|+.|--..+||--..|. || .||++--- - .+..|
T Consensus 73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-------~------------------~qR~~-- 121 (311)
T KOG0315|consen 73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-------S------------------CQRNY-- 121 (311)
T ss_pred ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-------c------------------cchhc--
Confidence 113344444434566665567999877765 88 67877610 0 12222
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEE
Q 000580 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSIS 329 (1410)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~ 329 (1410)
....+|-.+++-+...=|.+=..+|.|+||||+.+- . .+ + +......+|-|++
T Consensus 122 ~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~--c-~~--~----------------------liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 122 QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS--C-TH--E----------------------LIPEDDTSIQSLT 174 (311)
T ss_pred cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc--c-cc--c----------------------cCCCCCcceeeEE
Confidence 233667777777777788888888999999998652 1 11 1 1112335666666
Q ss_pred ecCccCccceEEEEEecCceEEEEe
Q 000580 330 PLSTLESKWLHLVAVLSDGRRMYLS 354 (1410)
Q Consensus 330 pIs~~ES~~l~LVAVT~~G~RlYfs 354 (1410)
+-+- .--|+|++.+|.=+-..
T Consensus 175 v~~d----gsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 175 VMPD----GSMLAAANNKGNCYVWR 195 (311)
T ss_pred EcCC----CcEEEEecCCccEEEEE
Confidence 5332 24789999999655544
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.15 E-value=5.8 Score=50.83 Aligned_cols=140 Identities=16% Similarity=0.284 Sum_probs=90.5
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEe
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
.=|+|+-+||-..+=. +++|++-...+++|...+-.. .||..|.+++--.-| -+.-.=|
T Consensus 369 ~eDgKVKvWn~~SgfC-~vTFteHts~Vt~v~f~~~g~-------------------~llssSLDGtVRAwD-lkRYrNf 427 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFC-FVTFTEHTSGVTAVQFTARGN-------------------VLLSSSLDGTVRAWD-LKRYRNF 427 (893)
T ss_pred cCCCcEEEEeccCceE-EEEeccCCCceEEEEEEecCC-------------------EEEEeecCCeEEeee-eccccee
Confidence 3469999999754322 378998888888888755432 122333322100000 0111113
Q ss_pred eCCCeEeecCCeeEEEEEecCCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceE
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIV 256 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Iv 256 (1410)
.| |+.|.+ +.++|++.-+.|.|-++|. -+.|||.--+- + |.-+.-. + .+.+.||.
T Consensus 428 RT--ft~P~p-~QfscvavD~sGelV~AG~-~d~F~IfvWS~----q-------TGqllDi---------L-sGHEgPVs 482 (893)
T KOG0291|consen 428 RT--FTSPEP-IQFSCVAVDPSGELVCAGA-QDSFEIFVWSV----Q-------TGQLLDI---------L-SGHEGPVS 482 (893)
T ss_pred ee--ecCCCc-eeeeEEEEcCCCCEEEeec-cceEEEEEEEe----e-------cCeeeeh---------h-cCCCCcce
Confidence 32 888887 8999999888999998886 23566652210 0 1111111 2 26788999
Q ss_pred EEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 257 ELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 257 qi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
.|++++..+.||+.|=+.||+.|++=
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEee
Confidence 99999999999999999999999993
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=86.01 E-value=40 Score=39.17 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=88.5
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccc----cce-----EEEEEeccceE----EEEEeeecCC
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVE----AIQ-----YLLILATPVEL----ILVGVCCSGA 163 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~----~I~-----~lLvvaT~~~I----~Llgv~~~~~ 163 (1410)
+-|..|.|||...+..- ..|.|-...+++|++-.--.-+--. .|+ -... .|-.+. .+-.|+|.++
T Consensus 82 swD~~lrlWDl~~g~~t-~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGEST-RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred cccceEEEEEecCCcEE-EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCC
Confidence 45899999999875432 4677777777887763311111100 111 0000 011111 2344455443
Q ss_pred CC-----CCCCCceeEEeeCCCeEeec----CCeeEEEEEecCCCCEEEee-cCCCEEEEEEecCCccccccceeeeccC
Q 000580 164 GD-----GTDPYAEISLQPLPEYTVPS----DGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSGWYKRCRKVCHTAG 233 (1410)
Q Consensus 164 ~~-----~~~~~~~l~L~~~~~~sv~t----dg~~v~~I~gt~~GRIF~gG-~DG~lyEl~Y~~~~~Wf~rc~kinht~g 233 (1410)
.+ ....++.+.+-+...+.+-+ ..-+++.++.++||-+-..| +||-++--.-.+ +||
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-----~k~-------- 226 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-----GKN-------- 226 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC-----Cce--------
Confidence 21 00112455555544433322 23468888888999988665 488544333211 111
Q ss_pred ccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 234 VGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 234 ~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+-+ +...+.|-.+++-+.|--|-..+..| |++|++..
T Consensus 227 lys------------l~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~ 263 (315)
T KOG0279|consen 227 LYS------------LEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLES 263 (315)
T ss_pred eEe------------ccCCCeEeeEEecCCceeEeeccCCc-eEEEeccc
Confidence 212 25677788888889998888888876 99999964
No 19
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.87 E-value=6.6 Score=50.14 Aligned_cols=139 Identities=16% Similarity=0.286 Sum_probs=84.5
Q ss_pred ccccceeEE--EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCC--CcccccceEEEEEeccceEEEEEeeecCC
Q 000580 88 FPEIRRAWA--SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKP--GIFVEAIQYLLILATPVELILVGVCCSGA 163 (1410)
Q Consensus 88 FPEI~rAW~--tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKp--gVF~~~I~~lLvvaT~~~I~Llgv~~~~~ 163 (1410)
||+.+.--+ +.|-++.+||+..+.-. ..+.|...+|..+.+.+.+- |.|-. .|.+--|.
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~-~~l~gh~stv~~~~~~~~~~~sgs~D~------------tVkVW~v~---- 319 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECT-HSLQGHTSSVRCLTIDPFLLVSGSRDN------------TVKVWDVT---- 319 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEE-EEecCCCceEEEEEccCceEeeccCCc------------eEEEEecc----
Confidence 444343333 46899999998765543 45678889999988865431 11222 22222221
Q ss_pred CCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCC--CEEEEEEecCCccccccceeeeccCcccccccc
Q 000580 164 GDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRW 241 (1410)
Q Consensus 164 ~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~ 241 (1410)
++ .-+++.. . .+-.|.+|..+ .+++|.|+.|| -||-+.+- +|
T Consensus 320 -n~----~~l~l~~-----~--h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~-------~c---------------- 363 (537)
T KOG0274|consen 320 -NG----ACLNLLR-----G--HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG-------KC---------------- 363 (537)
T ss_pred -Cc----ceEEEec-----c--ccccEEEEEec-CCEEEEEecCceEEEEEhhhc-------ee----------------
Confidence 11 1233331 1 23467888776 67777777799 33433311 11
Q ss_pred ccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 242 IVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 242 ~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
|-+ ++ +....|..+.+|.. +.+|+-+-+++|++||+..
T Consensus 364 -l~s-l~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 364 -LKS-LS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred -eee-ec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence 111 11 36778888999998 9999999999999999963
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=80.82 E-value=15 Score=47.23 Aligned_cols=136 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred eEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccce-EEEEEeeecCCCCCCCCCce
Q 000580 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAE 172 (1410)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~-I~Llgv~~~~~~~~~~~~~~ 172 (1410)
.-+|-|..|||.|.+...-. ..+-|-.+.|..+.++-|.- .| |+|||... +.++- .. + .+
T Consensus 297 l~vtaeQnl~l~d~~~l~i~-k~ivG~ndEI~Dm~~lG~e~-------~~-laVATNs~~lr~y~--~~---~-----~~ 357 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIV-KQIVGYNDEILDMKFLGPEE-------SH-LAVATNSPELRLYT--LP---T-----SY 357 (775)
T ss_pred EEEEccceEEEEEccccEEe-hhhcCCchhheeeeecCCcc-------ce-EEEEeCCCceEEEe--cC---C-----Cc
Confidence 56788999999988764432 33455678899999887752 22 66776543 44541 11 0 12
Q ss_pred eEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccccccce-------eeeccCccccccccc
Q 000580 173 ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRK-------VCHTAGVGNVISRWI 242 (1410)
Q Consensus 173 l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~k-------inht~g~~S~~~~~~ 242 (1410)
-+|++ =+.-.|.++..+.+|-.++.|+ |. .+|.+. +.|.| .+|++.+.-+...-.
T Consensus 358 c~ii~-------GH~e~vlSL~~~~~g~llat~sKD~svilWr~~--------~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 358 CQIIP-------GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN--------NNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eEEEe-------CchhheeeeeecccCcEEEEecCCceEEEEEec--------CCcchhhhhhhhcccccccceeeeccc
Confidence 22332 1223455666678898888776 77 677772 23433 256654444311101
Q ss_pred cccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 243 VPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 243 lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
=|+ .|-+-|.+.+|++|+|+.
T Consensus 423 ~as--------------------ffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 423 GAS--------------------FFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred Ccc--------------------EEEEecCCceEEEecCCC
Confidence 122 556778899999999986
No 21
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.03 E-value=17 Score=46.10 Aligned_cols=151 Identities=17% Similarity=0.381 Sum_probs=91.3
Q ss_pred eEEEEeCeEEEEecCCCCCCC-ccccCCCcceEEEEeeccCCCcccccceEEEEEec--cceEEEEEeeecCCCCCCCCC
Q 000580 94 AWASVDNSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILAT--PVELILVGVCCSGAGDGTDPY 170 (1410)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT--~~~I~Llgv~~~~~~~~~~~~ 170 (1410)
.=++-|-.+.+||-......+ ...-+-++.|.+++...++-. ||++- ...|+|.-+.-..+. -....
T Consensus 89 IS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---------lvaSgGLD~~IflWDin~~~~~-l~~s~ 158 (735)
T KOG0308|consen 89 ISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---------LVASGGLDRKIFLWDINTGTAT-LVASF 158 (735)
T ss_pred EEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCce---------eEEecCCCccEEEEEccCcchh-hhhhc
Confidence 446779999999997654222 344455778888887533322 33332 234666655432110 00011
Q ss_pred ceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccc-cccceeeeccCccccccccccccccc
Q 000580 171 AEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFR 248 (1410)
Q Consensus 171 ~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf-~rc~kinht~g~~S~~~~~~lPs~~~ 248 (1410)
++++...++ +=|- ..+-+..-+++|-||.+|. .++|- | |- +-|.|+.- ++
T Consensus 159 n~~t~~sl~--sG~k--~siYSLA~N~t~t~ivsGgtek~lr-~-------wDprt~~kimk----------------Lr 210 (735)
T KOG0308|consen 159 NNVTVNSLG--SGPK--DSIYSLAMNQTGTIIVSGGTEKDLR-L-------WDPRTCKKIMK----------------LR 210 (735)
T ss_pred cccccccCC--CCCc--cceeeeecCCcceEEEecCcccceE-E-------eccccccceee----------------ee
Confidence 233333222 1122 3466777788999999987 55432 1 32 44555431 12
Q ss_pred cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 249 FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 249 ~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+..|.|.-+.+++.-.-+-+=|++|+|++|+||.
T Consensus 211 -GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 211 -GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred -ccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 5678889999988888888999999999999975
No 22
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=79.16 E-value=53 Score=39.48 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=102.0
Q ss_pred eEEEEe--CeEEEEecCCCCCCC-ccccCCCcceEEEEeeccC------CCcccccceEEEEEeccceE-----EEEEee
Q 000580 94 AWASVD--NSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSK------PGIFVEAIQYLLILATPVEL-----ILVGVC 159 (1410)
Q Consensus 94 AW~tID--n~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LvkPK------pgVF~~~I~~lLvvaT~~~I-----~Llgv~ 159 (1410)
|-+.++ .+|-+.++.+....| ..| ++.|++|.+-|-| --+|+=+|+...++=|-.++ -|.+++
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 334444 569999998765543 334 8999999986643 34566666666666554444 245555
Q ss_pred ecCCCC-----CCCCCceeEEeeCC----CeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceee
Q 000580 160 CSGAGD-----GTDPYAEISLQPLP----EYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVC 229 (1410)
Q Consensus 160 ~~~~~~-----~~~~~~~l~L~~~~----~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kin 229 (1410)
.+.+.. +.....++.||.+- .+.+..+.-.+.++.-+.+|-.-..++ .|-|..+.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf--------------- 201 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF--------------- 201 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE---------------
Confidence 443211 11223466666542 245555556677777777887777766 56666655
Q ss_pred ecc-Cccccccccccccccc-cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 230 HTA-GVGNVISRWIVPNVFR-FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 230 ht~-g~~S~~~~~~lPs~~~-~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
++. |-. +=. |+ ....-.|.+|+++..-.+|-.=|++.||.||+|+.
T Consensus 202 ~v~~G~k-------l~e-FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 202 SVPEGQK-------LYE-FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EcCCccE-------eee-eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 111 110 001 22 12355699999999999999999999999999964
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.69 E-value=61 Score=42.21 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=99.0
Q ss_pred EEEEeCeEEEEecCCCC-------------CCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeec
Q 000580 95 WASVDNSLFLWRFDKWD-------------GQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCS 161 (1410)
Q Consensus 95 W~tIDn~L~LW~Y~~~~-------------~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~ 161 (1410)
=++=|..|++|.|+... +..-.-++.++.+-.+.-.|-|.--|.++-..|.+.+-...-.+|++.|+
T Consensus 206 tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs 285 (893)
T KOG0291|consen 206 TVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS 285 (893)
T ss_pred EEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec
Confidence 34558999999998211 11011122344566666666666666666566778888888889999887
Q ss_pred CCCCCCCCCceeEEeeCCCe----EeecCCeeEEEEEecCCCC-EEEeec-CC--CEEEEEEecCCccc-cc----ccee
Q 000580 162 GAGDGTDPYAEISLQPLPEY----TVPSDGVTMTCITCTDKGR-ILLAGR-DG--NIYELLYTTGSGWY-KR----CRKV 228 (1410)
Q Consensus 162 ~~~~~~~~~~~l~L~~~~~~----sv~tdg~~v~~I~gt~~GR-IF~gG~-DG--~lyEl~Y~~~~~Wf-~r----c~ki 228 (1410)
+ .+..||..|.| +.++-.-.|..+.-..+|. |=+||. -| -|||.+ + +++. |. -+-.
T Consensus 286 s--------G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq--s-EsYVlKQQgH~~~i~ 354 (893)
T KOG0291|consen 286 S--------GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ--S-ESYVLKQQGHSDRIT 354 (893)
T ss_pred C--------CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee--c-cceeeecccccccee
Confidence 5 34556666643 2233334455555555655 445554 56 456654 2 2221 10 0111
Q ss_pred eeccCc-cccccc---------cc-cccc--cccCC-CCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 229 CHTAGV-GNVISR---------WI-VPNV--FRFGA-VDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 229 nht~g~-~S~~~~---------~~-lPs~--~~~~~-~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
|...+. +++|.. |= ..+| ..|.+ ...+.-+.+-...+.|.+.|-+|++|+|||.-
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 122111 222221 10 1111 12333 35577777778899999999999999999963
No 24
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=77.11 E-value=80 Score=37.46 Aligned_cols=151 Identities=11% Similarity=0.204 Sum_probs=87.7
Q ss_pred CeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecC----------CCCCC--
Q 000580 100 NSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSG----------AGDGT-- 167 (1410)
Q Consensus 100 n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~----------~~~~~-- 167 (1410)
|++++||= -..-.|.....-.|..+|+....+ +||.++..|+++--.-+. ++.|-
T Consensus 75 NkviIWDD-----------~k~~~i~el~f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDD-----------LKERCIIELSFNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEec-----------ccCcEEEEEEeccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 78999992 223344444555555555555444 778888888777533110 01000
Q ss_pred --------------CCCceeEEee---CC---CeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccc
Q 000580 168 --------------DPYAEISLQP---LP---EYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCR 226 (1410)
Q Consensus 168 --------------~~~~~l~L~~---~~---~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~ 226 (1410)
.+...+++.. +. -..|+.+...|.|+.=+.+|-.-..++ .|-|..|-=. ++|
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt-~~g------ 214 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT-EDG------ 214 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc-CCC------
Confidence 0112333321 11 145556666777777777777776665 7777766522 111
Q ss_pred eeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000580 227 KVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 227 kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
.... -+=+......|-+|++-+.-..|-..|++||+.+|.|..+
T Consensus 215 ------~~l~--------E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 ------TLLQ--------ELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ------cEee--------eeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 1111 1112224566899999999999999999999999999643
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=74.90 E-value=45 Score=39.98 Aligned_cols=47 Identities=17% Similarity=0.382 Sum_probs=35.2
Q ss_pred ccccccccccccceeEEEE---eCeEEEEecCCCCCCCccccCCCcceEEEEe
Q 000580 80 EGNALCGIFPEIRRAWASV---DNSLFLWRFDKWDGQCPEYTGEEQVICAVGL 129 (1410)
Q Consensus 80 q~~~~mGlFPEI~rAW~tI---Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L 129 (1410)
+..--+++-| +.-|+.- |++=|||+..+++ +..+.-|-++.|+++..
T Consensus 65 ~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 65 DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSF 114 (399)
T ss_pred CceEEEEeCC--CCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEE
Confidence 5556678888 7778764 7999999998876 43555677788888765
No 26
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=74.64 E-value=34 Score=40.96 Aligned_cols=107 Identities=17% Similarity=0.322 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCccCCccccccchhhh-hhHh
Q 000580 1090 FDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLD-LLEG 1168 (1410)
Q Consensus 1090 ~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~fl~-~le~ 1168 (1410)
.++|-.||....+|.++|....+-|-+. -..++|+++|..|....+... +..|.. .+|+
T Consensus 97 ~~~L~~~y~q~d~~~~~a~~~l~~~~~~-------~~~~~~~~~L~~a~~~y~~~k-------------~~~f~~~~~e~ 156 (319)
T PF04840_consen 97 RELLKDFYYQEDRFQELANLHLQEALSQ-------KDVEEKISFLKQAQKLYSKSK-------------NDAFEAKLIEE 156 (319)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHHHhcc-------------hhHHHHHHHHH
Confidence 4789999999999999999998877532 267899999999986654433 223433 4577
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCCCCCccchhhHHHHHHHHHHh--cccCCCHHHHHHHhhcc
Q 000580 1169 KLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKEL--SLDLKSITQLYNEYAVP 1244 (1410)
Q Consensus 1169 kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L--~~~Ll~it~Lyn~yA~P 1244 (1410)
-++..++|.++-+.... . ..+ .. +.+.+..| -+......+|-.+|-.|
T Consensus 157 q~~Ll~~Q~~Le~~~~~---~----------f~~-------~S--------l~~Ti~~li~~~~~k~A~kl~k~Fkv~ 206 (319)
T PF04840_consen 157 QIKLLEYQKELEEKYNT---N----------FVG-------LS--------LNDTIRKLIEMGQEKQAEKLKKEFKVP 206 (319)
T ss_pred HHHHHHHHHHHHHHhcc---c----------hhc-------CC--------HHHHHHHHHHCCCHHHHHHHHHHcCCc
Confidence 88888888886544321 0 001 11 34444444 56677788888888765
No 27
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=73.50 E-value=40 Score=39.75 Aligned_cols=68 Identities=18% Similarity=0.382 Sum_probs=42.2
Q ss_pred EecCCCCEEEeec---CCCEEEEEEecCCcccccccee----eeccCccccccccccccccccCCCCceEEEEEeCCCce
Q 000580 194 TCTDKGRILLAGR---DGNIYELLYTTGSGWYKRCRKV----CHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQL 266 (1410)
Q Consensus 194 ~gt~~GRIF~gG~---DG~lyEl~Y~~~~~Wf~rc~ki----nht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~i 266 (1410)
.-+++||.-..+. |=-|||+.|+. +|=|+...++ -|+++. .-.++-++-.-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV---------------------~~~aFsn~S~r 292 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAV---------------------LAAAFSNSSTR 292 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEecc-Ccchhhhhhhheeccchhhe---------------------eeeeeCCCcce
Confidence 3368999776553 77999999985 4544222222 233332 22233344444
Q ss_pred EEEEcCCCeEEEEEeCC
Q 000580 267 LYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 267 LYtLs~~s~I~vY~Lg~ 283 (1410)
.-|.|.+|++++||...
T Consensus 293 ~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eEEEecCCcEEEeeccc
Confidence 56899999999999853
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=20 Score=45.47 Aligned_cols=135 Identities=19% Similarity=0.357 Sum_probs=80.8
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000580 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1410)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~ 178 (1410)
|=.+-||||++.-.....|+|-.|-+-.|+.-.-.++.|... +-...|.+--+. .|.
T Consensus 118 Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~-------sLDrTVKVWslg----------------s~~ 174 (794)
T KOG0276|consen 118 DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA-------SLDRTVKVWSLG----------------SPH 174 (794)
T ss_pred ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee-------eccccEEEEEcC----------------CCC
Confidence 557889999985544478999999999999988889999642 111122222221 123
Q ss_pred CCeEeecCCeeEEEEEecCCC---CEEEeecCCCEEEEEEecCCcccccccee--eeccCccccccccccccccccCCCC
Q 000580 179 PEYTVPSDGVTMTCITCTDKG---RILLAGRDGNIYELLYTTGSGWYKRCRKV--CHTAGVGNVISRWIVPNVFRFGAVD 253 (1410)
Q Consensus 179 ~~~sv~tdg~~v~~I~gt~~G---RIF~gG~DG~lyEl~Y~~~~~Wf~rc~ki--nht~g~~S~~~~~~lPs~~~~~~~d 253 (1410)
|.|+..-+---|+||.-...| .+--|+.|--|-=-+||. +.|-.. -||++.+.+. ..|.
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~TLeGHt~Nvs~v~---fhp~-------- 238 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQTLEGHTNNVSFVF---FHPE-------- 238 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHHHhhcccccceEEE---ecCC--------
Confidence 345544333456677655555 666665566555556775 334332 3666544331 1332
Q ss_pred ceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 254 PIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
=.|+-|=|++|++++|+-.
T Consensus 239 ----------lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 239 ----------LPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred ----------CcEEEEecCCccEEEecCc
Confidence 2366777888888888754
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=70.81 E-value=94 Score=41.76 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=26.6
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
...+..+.++...++|.+-+.+++|.+|+..
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 4556678888889999999999999999975
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=69.65 E-value=37 Score=40.91 Aligned_cols=164 Identities=15% Similarity=0.226 Sum_probs=99.2
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEe
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
+.|+.+.+||-. |... ..+.|-...|.+|+.+.+-+-- . ++|++..+-.|.--.++.+.. -+...
T Consensus 122 sYDg~~riWd~~-Gk~~-~~~~Ght~~ik~v~~v~~n~~~------~-~fvsas~Dqtl~Lw~~~~~~~------~~~~~ 186 (423)
T KOG0313|consen 122 SYDGTSRIWDLK-GKSI-KTIVGHTGPIKSVAWVIKNSSS------C-LFVSASMDQTLRLWKWNVGEN------KVKAL 186 (423)
T ss_pred ecCCeeEEEecC-CceE-EEEecCCcceeeeEEEecCCcc------c-eEEEecCCceEEEEEecCchh------hhhHH
Confidence 579999999975 3333 4678889999999999775421 1 455555554444333433221 00100
Q ss_pred eCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCc--cc-cccceeeeccC-cccccccccccccccc
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSG--WY-KRCRKVCHTAG-VGNVISRWIVPNVFRF 249 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~--Wf-~rc~kinht~g-~~S~~~~~~lPs~~~~ 249 (1410)
-...=+--.|-+|...++|--|..|+ |. .||-..-..++. =+ +|=+|.+.... ..-- .|-...-
T Consensus 187 ----~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r-----~P~vtl~ 257 (423)
T KOG0313|consen 187 ----KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR-----TPLVTLE 257 (423)
T ss_pred ----hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc-----CceEEec
Confidence 01111223566777778999999998 87 566622211111 11 33333333321 1122 4433334
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCC
Q 000580 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNG 285 (1410)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g 285 (1410)
+..+++.+++.++ -..+|+-|-+-+|++|||...|
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 6889999999999 7889999999999999997654
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=69.23 E-value=23 Score=41.48 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=89.6
Q ss_pred EEeCeEEEEecCCCCCCCccccCC--CcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeE
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGE--EQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~--~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
+-|..+-+|+-..++.. ..|-.+ +-.|.+|-+. || +-.|.+|---...|+|+.+.- +
T Consensus 367 SsDgtvkvW~~KtteC~-~Tfk~~~~d~~vnsv~~~-PK------npeh~iVCNrsntv~imn~qG-------------Q 425 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECL-STFKPLGTDYPVNSVILL-PK------NPEHFIVCNRSNTVYIMNMQG-------------Q 425 (508)
T ss_pred cCCccEEEecCcchhhh-hhccCCCCcccceeEEEc-CC------CCceEEEEcCCCeEEEEeccc-------------e
Confidence 45789999998776654 566543 4456666554 33 345556655666677666521 1
Q ss_pred EeeCCCeEee--cCCeeEEEEEecCCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCC
Q 000580 175 LQPLPEYTVP--SDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1410)
Q Consensus 175 L~~~~~~sv~--tdg~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~ 252 (1410)
+.. .|+-. -.|-.|+++.++..--||..|+||-+|=+.|++ .|.-|| +| -.+
T Consensus 426 vVr--sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--------G~LE~t-----------l~-----VhE 479 (508)
T KOG0275|consen 426 VVR--SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--------GKLERT-----------LP-----VHE 479 (508)
T ss_pred EEe--eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--------Cceeee-----------ee-----ccc
Confidence 221 12211 135678888877778899999999999999873 223333 33 123
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000580 253 DPIVELVFDNERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vY~ 280 (1410)
.-++.|.=-+.+|+|-+-+++|.+..|.
T Consensus 480 kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCcccchhhhhcccchhhhcC
Confidence 3456777789999999999999988874
No 32
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.22 E-value=53 Score=38.82 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=87.6
Q ss_pred ccccccccccceeEEEE--eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEee
Q 000580 82 NALCGIFPEIRRAWASV--DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVC 159 (1410)
Q Consensus 82 ~~~mGlFPEI~rAW~tI--Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~ 159 (1410)
.+..-|-|.=.-| ++| |..|-+||.-.+..-+ .-.+.+.=+.|.-- |+-.-|+ +++-
T Consensus 130 Vt~lsiHPS~KLA-LsVg~D~~lr~WNLV~Gr~a~--v~~L~~~at~v~w~-~~Gd~F~------v~~~----------- 188 (362)
T KOG0294|consen 130 VTDLSIHPSGKLA-LSVGGDQVLRTWNLVRGRVAF--VLNLKNKATLVSWS-PQGDHFV------VSGR----------- 188 (362)
T ss_pred cceeEecCCCceE-EEEcCCceeeeehhhcCccce--eeccCCcceeeEEc-CCCCEEE------EEec-----------
Confidence 6777778875544 444 7899999998876532 12233333333332 4433342 2221
Q ss_pred ecCCCCCCCCCceeEEeeCCC---eEeecCCeeEEEEEecCCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccc
Q 000580 160 CSGAGDGTDPYAEISLQPLPE---YTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGN 236 (1410)
Q Consensus 160 ~~~~~~~~~~~~~l~L~~~~~---~sv~tdg~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S 236 (1410)
+.+.+|.+.. |.-.+.-..+.|+..-+.+-.|.||.|+.|--.+ | ..
T Consensus 189 -----------~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D----------~------ds--- 238 (362)
T KOG0294|consen 189 -----------NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKD----------T------DS--- 238 (362)
T ss_pred -----------cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEec----------c------CC---
Confidence 1233333221 1111111345666666778888888885443332 1 11
Q ss_pred cccccccccccccCCCCceEEEE-EeC-CCceEEEEcCCCeEEEEEeCCCCCCCcceeeee
Q 000580 237 VISRWIVPNVFRFGAVDPIVELV-FDN-ERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEE 295 (1410)
Q Consensus 237 ~~~~~~lPs~~~~~~~d~Ivqi~-vD~-sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~ 295 (1410)
- +|-......+.+|..|+ +++ .-.+|-|-|++|.|.|||+.-+.....+-|++.
T Consensus 239 ~-----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~ 294 (362)
T KOG0294|consen 239 D-----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL 294 (362)
T ss_pred C-----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe
Confidence 1 33222235677888887 444 567999999999999999976544333444443
No 33
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=67.54 E-value=16 Score=34.86 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhHhhHHHHHHHhhcC
Q 000580 829 RLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVT 886 (1410)
Q Consensus 829 ~l~k~Li~aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~ 886 (1410)
-|+..|+.++.+.+-.... .+.|+|-+.|++.||....+..-++|.|.-.|-+++..
T Consensus 11 PL~EvlC~~I~dln~~~~~-at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkI 67 (80)
T PF10264_consen 11 PLPEVLCWVISDLNAAGQP-ATQETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKI 67 (80)
T ss_pred eHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCce
Confidence 4666777777777776555 79999999999999999999999999999999998865
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.50 E-value=48 Score=43.02 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=84.9
Q ss_pred ccccccccccc--cceeEEEEe------------CeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEE
Q 000580 80 EGNALCGIFPE--IRRAWASVD------------NSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLL 145 (1410)
Q Consensus 80 q~~~~mGlFPE--I~rAW~tID------------n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lL 145 (1410)
+....+|+... -|+.|+++| -.+.+||...++-+-.-++ -+-| .-+=
T Consensus 9 e~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~-----------~~~k--------~evt 69 (888)
T KOG0306|consen 9 EPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLIL-----------LKKK--------AEVT 69 (888)
T ss_pred cccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhh-----------hccc--------ceEE
Confidence 33345666666 677788777 3678899987632211111 0111 1122
Q ss_pred EEeccceEEEEEeeecCCCCCCCCCceeEEeeCC----CeEeecCCeeEEEEEecCCCCEEEee-cCCCEEEEEEecCCc
Q 000580 146 ILATPVELILVGVCCSGAGDGTDPYAEISLQPLP----EYTVPSDGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSG 220 (1410)
Q Consensus 146 vvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~----~~sv~tdg~~v~~I~gt~~GRIF~gG-~DG~lyEl~Y~~~~~ 220 (1410)
+++-.-++.+|+|.|.+ | -++++..- .+..+-+..-|+++.-...|--|..| .||+|.=-+--.|.|
T Consensus 70 ~l~~~~d~l~lAVGYaD---G-----sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYAD---G-----SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred EeeccCCcceEEEEecC---c-----eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee
Confidence 34445667788999964 2 35555432 12222244667888777766555555 499654333335555
Q ss_pred cccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 221 WYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 221 Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
-| +.- +.+|.|+|+-+=+.-++|-+-+.++.|++|||.
T Consensus 142 l~---rL~---------------------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 142 LF---RLR---------------------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eE---Eee---------------------cchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 43 111 234555555544556677777888888888885
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.65 E-value=89 Score=39.20 Aligned_cols=72 Identities=25% Similarity=0.472 Sum_probs=52.3
Q ss_pred CCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeC
Q 000580 186 DGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDN 262 (1410)
Q Consensus 186 dg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~ 262 (1410)
+...|+++.-++.|+..+.|. || .||.+. + | .. +.. + -...++|.-+.+..
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~----------~-------~--~~-----~~~-l-~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR----------T-------G--EC-----VRK-L-KGHSDGISGLAFSP 298 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEecc----------C-------C--eE-----EEe-e-eccCCceEEEEECC
Confidence 345678888888886666665 88 444443 1 1 11 111 1 14678999999999
Q ss_pred CCceEEEEcCCCeEEEEEeCC
Q 000580 263 ERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 263 sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
..++|.+-+.++.|++||+..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred CCCEEEEcCCCccEEEEECCC
Confidence 999999999999999999964
No 36
>PTZ00421 coronin; Provisional
Probab=64.59 E-value=1.2e+02 Score=38.55 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCceEEEEc-CCCeEEEEEeCC
Q 000580 254 PIVELVFDNERQLLYART-EEMKLQVFVLGP 283 (1410)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs-~~s~I~vY~Lg~ 283 (1410)
.+....+|+.-++||+=+ .+++|++|++..
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 344456788888999877 489999999963
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=1.6e+02 Score=34.80 Aligned_cols=74 Identities=20% Similarity=0.460 Sum_probs=50.0
Q ss_pred CeeEEEEEecCCCCEEEeec-CCCE--EEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCC
Q 000580 187 GVTMTCITCTDKGRILLAGR-DGNI--YELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE 263 (1410)
Q Consensus 187 g~~v~~I~gt~~GRIF~gG~-DG~l--yEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~s 263 (1410)
.-.|+.|...+.+..|+.|. |++| |.|. . ++|.-+-+..+.. + .+.|++
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR--~-----~~cqg~l~~~~~p-------i--------------~AfDp~ 151 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR--V-----KKCQGLLNLSGRP-------I--------------AAFDPE 151 (311)
T ss_pred CceEEEEEecCCCCeEEecccCCeEEeeEec--C-----CCCceEEecCCCc-------c--------------eeECCC
Confidence 46789999999999999998 8854 4443 1 5676665554210 1 133444
Q ss_pred CceEEEEcCCC-eEEEEEeCCCCCCCc
Q 000580 264 RQLLYARTEEM-KLQVFVLGPNGDGPL 289 (1410)
Q Consensus 264 R~iLYtLs~~s-~I~vY~Lg~~g~~~~ 289 (1410)
++++++...+ .|+.||+-.-+.++.
T Consensus 152 -GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 152 -GLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred -CcEEEEecCCCeEEEEEecccCCCCc
Confidence 5666666666 999999988777763
No 38
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=64.21 E-value=63 Score=36.48 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred EEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecC---------CCEEEE
Q 000580 143 YLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRD---------GNIYEL 213 (1410)
Q Consensus 143 ~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~D---------G~lyEl 213 (1410)
..|+||....+.++ ... . .+++...+. ..-.......++++..++|+||++... |.||.+
T Consensus 52 g~l~v~~~~~~~~~--d~~---~-----g~~~~~~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 52 GRLYVADSGGIAVV--DPD---T-----GKVTVLADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp SEEEEEETTCEEEE--ETT---T-----TEEEEEEEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CEEEEEEcCceEEE--ecC---C-----CcEEEEeec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 45677777777666 221 1 244433211 111124578899999999999999752 446665
Q ss_pred EEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEE-EEcCCCeEEEEEeCCCCC
Q 000580 214 LYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLY-ARTEEMKLQVFVLGPNGD 286 (1410)
Q Consensus 214 ~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLY-tLs~~s~I~vY~Lg~~g~ 286 (1410)
.= ++- +..+ .. .-..---|++++..+.|| +-+.++.|..|++..++.
T Consensus 121 ~~---~~~---~~~~--------------~~------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 121 DP---DGK---VTVV--------------AD------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp ET---TSE---EEEE--------------EE------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred CC---CCe---EEEE--------------ec------CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 51 111 1100 00 011113577888888887 678899999999976653
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=63.18 E-value=1.8e+02 Score=36.70 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000580 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
+....|.-+.+-+.+..||+=|-+|.|.-|++|..
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 45678999999999999999999999999999853
No 40
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=62.85 E-value=3.5e+02 Score=32.80 Aligned_cols=163 Identities=16% Similarity=0.281 Sum_probs=92.3
Q ss_pred CeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccce-EEEEEeeecCCCCCCCCCceeEEeeC
Q 000580 100 NSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEISLQPL 178 (1410)
Q Consensus 100 n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~-I~Llgv~~~~~~~~~~~~~~l~L~~~ 178 (1410)
.-+|.|+.+...+ ++....+...+..|-+=.|.++-+||=++.-+-+ =-+.+-.+++ .+ ..+++.+
T Consensus 16 ~gI~v~~ld~~~g------~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~-~~-----G~Lt~ln- 82 (346)
T COG2706 16 QGIYVFNLDTKTG------ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP-DD-----GRLTFLN- 82 (346)
T ss_pred CceEEEEEeCccc------ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC-CC-----CeEEEee-
Confidence 3455555543222 3455666677778999899999999988887733 1122222321 11 3677775
Q ss_pred CCeEeecCCeeEEEEEecCCCCEEEeec--CC--CEEEEEEecCCccc-cccceeeeccC---------------c---c
Q 000580 179 PEYTVPSDGVTMTCITCTDKGRILLAGR--DG--NIYELLYTTGSGWY-KRCRKVCHTAG---------------V---G 235 (1410)
Q Consensus 179 ~~~sv~tdg~~v~~I~gt~~GRIF~gG~--DG--~lyEl~Y~~~~~Wf-~rc~kinht~g---------------~---~ 235 (1410)
..+++|-.-+.|.-.++||.-|+.. -| .+|.+. ++|=. .-..++-|+.+ + .
T Consensus 83 ---~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~---~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 83 ---RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ---ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred ---ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc---cCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 2345555556666667899888765 33 334432 23322 22223333221 1 0
Q ss_pred ccccccccccc-------ccc-------------CCCCceEEEEEeCCCceEEEEcC-CCeEEEEEeCCC
Q 000580 236 NVISRWIVPNV-------FRF-------------GAVDPIVELVFDNERQLLYARTE-EMKLQVFVLGPN 284 (1410)
Q Consensus 236 S~~~~~~lPs~-------~~~-------------~~~d~Ivqi~vD~sR~iLYtLs~-~s~I~vY~Lg~~ 284 (1410)
.++ ++|.+ |.+ +.-..=..|++=+..++.|..+| +|+|.||.....
T Consensus 157 ~~l---~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 157 RYL---VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CEE---EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 010 13321 111 12233457889999999999998 889999999765
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=61.99 E-value=1.7e+02 Score=35.38 Aligned_cols=194 Identities=13% Similarity=0.246 Sum_probs=118.8
Q ss_pred HHHHHHhcCCccccccccccccceeE-EEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccccc----ce--
Q 000580 70 LVERYNAAGGEGNALCGIFPEIRRAW-ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEA----IQ-- 142 (1410)
Q Consensus 70 i~e~~n~~~~q~~~~mGlFPEI~rAW-~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~----I~-- 142 (1410)
|-+.|.|+ ...--..+.|-+.+.- ..-|..+-+||......+ ..+-|-..+|..|-.-.-.|-|..-. |+
T Consensus 228 IR~YhGHl--S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHL--SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred HHHhcccc--ceeEEEeccccceeEEecCCcceEEEeeecccceE-EEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 55566676 5555667889888753 457999999999865544 55677788888887755455444321 21
Q ss_pred -----EEEEEeccceEEEEEeeecCCCC--CCCCCceeEEeeCC--Ce--EeecCCeeEEEEEecCCCCEEEeecCCCEE
Q 000580 143 -----YLLILATPVELILVGVCCSGAGD--GTDPYAEISLQPLP--EY--TVPSDGVTMTCITCTDKGRILLAGRDGNIY 211 (1410)
Q Consensus 143 -----~lLvvaT~~~I~Llgv~~~~~~~--~~~~~~~l~L~~~~--~~--sv~tdg~~v~~I~gt~~GRIF~gG~DG~ly 211 (1410)
.-++.-|.....+-+++..+... .+....++.=...| .| .++-++..++++.+.++|-.|-||.+|.++
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIM 384 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEE
Confidence 11333455555566666553211 00000111111111 11 133455678899989999999999999887
Q ss_pred EEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 212 ELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 212 El~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
--.|.+.- |.---+|- +-|.. +-.+..|.-.++|.+.--|.|=-.+-+|.+|.=.
T Consensus 385 fwdwksg~-----nyQ~~~t~---------vqpGS--l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 385 FWDWKSGH-----NYQRGQTI---------VQPGS--LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEecCcCc-----cccccccc---------ccCCc--cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 66654322 21111221 13321 1346779999999999999999999999999854
No 42
>PTZ00420 coronin; Provisional
Probab=61.20 E-value=4.8e+02 Score=33.94 Aligned_cols=142 Identities=8% Similarity=0.079 Sum_probs=77.8
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEe-ccceEEEEEeeecCCCCCCCCCceeEEe
Q 000580 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILA-TPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvva-T~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
.+..+.||+....... ..+.+-...|.+|..- |. -..+|+.+ -.-.|.|.-+.-.. ..+.-.
T Consensus 52 ~~gvI~L~~~~r~~~v-~~L~gH~~~V~~lafs-P~-------~~~lLASgS~DgtIrIWDi~t~~--------~~~~~i 114 (568)
T PTZ00420 52 LIGAIRLENQMRKPPV-IKLKGHTSSILDLQFN-PC-------FSEILASGSEDLTIRVWEIPHND--------ESVKEI 114 (568)
T ss_pred ceeEEEeeecCCCceE-EEEcCCCCCEEEEEEc-CC-------CCCEEEEEeCCCeEEEEECCCCC--------cccccc
Confidence 4677888887654332 4566667788888763 22 11223222 23345555442110 000000
Q ss_pred eCCCeEeecCCeeEEEEEecCCCC-EEEe-ecCCCE--EEEEEecCCccccccceeeeccCccccccccccccccccCCC
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKGR-ILLA-GRDGNI--YELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~GR-IF~g-G~DG~l--yEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~ 252 (1410)
..+...+..+.-.|++|.-+++|+ |+++ |.||.| |.+. .. . . +.. +...
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~--tg-------~----------~-----~~~---i~~~ 167 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE--NE-------K----------R-----AFQ---INMP 167 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC--CC-------c----------E-----EEE---EecC
Confidence 112122333345688898898876 4444 458854 4432 10 0 0 000 1123
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 253 DPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+.|..+.++..-++|.+=+.+++|++||+..
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 5678888888888998888899999999853
No 43
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=59.63 E-value=28 Score=41.41 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=101.4
Q ss_pred EeCeEEEEecCCCCC-CCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEe
Q 000580 98 VDNSLFLWRFDKWDG-QCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 98 IDn~L~LW~Y~~~~~-~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
.|-.++|||...... .-.++|--.+-|+.|....-+|++... =++.--|.|+-+.-+++.+. =++..
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS-------GSvDGLvnlfD~~~d~EeDa-----L~~vi 208 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS-------GSVDGLVNLFDTKKDNEEDA-----LLHVI 208 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe-------ecccceEEeeecCCCcchhh-----HHHhh
Confidence 466799999987654 235677778899999976666654322 22222355666554432221 12233
Q ss_pred eCCCeEeecCCeeEEEEEecCCC--CEEEeecCC--CEEEEEEecCCccc-cc------------cce-e-eeccCcccc
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKG--RILLAGRDG--NIYELLYTTGSGWY-KR------------CRK-V-CHTAGVGNV 237 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~G--RIF~gG~DG--~lyEl~Y~~~~~Wf-~r------------c~k-i-nht~g~~S~ 237 (1410)
+ .|..|.+|.=..+| |||.-..++ .+||+.=-+++-|+ +- |.= | +|..|-.-+
T Consensus 209 N--------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 209 N--------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred c--------ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 2 24567788777888 999888855 89999987788888 21 211 1 232110000
Q ss_pred ---ccc-----cccccc-------------cccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEe
Q 000580 238 ---ISR-----WIVPNV-------------FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVL 281 (1410)
Q Consensus 238 ---~~~-----~~lPs~-------------~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~L 281 (1410)
+-. -++|.. +..+..+-+..+.+|..+..|||=.++|-+.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 000 012221 22124456678999999999999999999999995
No 44
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=57.42 E-value=95 Score=37.27 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCeeEEEEEecCCCCEEEeecCC--CEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCC
Q 000580 186 DGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE 263 (1410)
Q Consensus 186 dg~~v~~I~gt~~GRIF~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~s 263 (1410)
.+....++.-+++||.++...-| .||-+.+....+-+.++..+..-.|-... .|++++.
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-------------------h~~f~pd 202 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-------------------HLAFSPD 202 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-------------------EEEE-TT
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc-------------------EEEEcCC
Q ss_pred CceEEEEcC-CCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCccceEEE
Q 000580 264 RQLLYARTE-EMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLV 342 (1410)
Q Consensus 264 R~iLYtLs~-~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~LV 342 (1410)
.+++|...+ .++|.||++......+ .....++..|-.......-.=|
T Consensus 203 g~~~Yv~~e~s~~v~v~~~~~~~g~~--------------------------------~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 203 GKYAYVVNELSNTVSVFDYDPSDGSL--------------------------------TEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEE--------------------------------EEEEEEESCETTSCSSSSEEEE
T ss_pred cCEEEEecCCCCcEEEEeecccCCce--------------------------------eEEEEeeeccccccccCCceeE
Q ss_pred EEecCceEEEEe
Q 000580 343 AVLSDGRRMYLS 354 (1410)
Q Consensus 343 AVT~~G~RlYfs 354 (1410)
+++.+|.+||.+
T Consensus 251 ~ispdg~~lyvs 262 (345)
T PF10282_consen 251 AISPDGRFLYVS 262 (345)
T ss_dssp EE-TTSSEEEEE
T ss_pred EEecCCCEEEEE
No 45
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=57.09 E-value=33 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000580 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~ 280 (1410)
...++|..|.+.+..+.|.|=+.+++|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999999999999997
No 46
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=56.74 E-value=3.3e+02 Score=32.11 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=24.2
Q ss_pred eEEEEEeCCCceEEEEcCC-CeEEEEEeCCCC
Q 000580 255 IVELVFDNERQLLYARTEE-MKLQVFVLGPNG 285 (1410)
Q Consensus 255 Ivqi~vD~sR~iLYtLs~~-s~I~vY~Lg~~g 285 (1410)
...+.+|+..+.||+-+.. +.|.||++..+|
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 4567788888999986654 899999997644
No 47
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.61 E-value=3.1e+02 Score=34.02 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=29.1
Q ss_pred cccccccccccceeE------EEEeCeEEEEecCCCCCCCccccCCCcceEEEEe
Q 000580 81 GNALCGIFPEIRRAW------ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGL 129 (1410)
Q Consensus 81 ~~~~mGlFPEI~rAW------~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L 129 (1410)
.+|.-=++=-.+|.| -+.|+++.|||.+.+.+. ..+.-....|.++..
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-~s~~~~~k~Vq~l~w 294 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-SSITHHGKKVQTLEW 294 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-eehhhcCCceeEEEe
Confidence 344333444455544 467999999999887764 334434455666654
No 48
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.12 E-value=2.3e+02 Score=32.88 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=89.0
Q ss_pred CeEEEEecCCCCCC-CccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCC---CceeEE
Q 000580 100 NSLFLWRFDKWDGQ-CPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDP---YAEISL 175 (1410)
Q Consensus 100 n~L~LW~Y~~~~~~-~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~---~~~l~L 175 (1410)
..+-|+|.+.+++. .+.||+-...|++||. ..+=+++ |+++.||+-+ -+.++.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF--------~~dgrWM---------------yTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF--------QCDGRWM---------------YTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEE--------eecCeEE---------------EecCCCceEEEEeccCccc
Confidence 56789999876663 3789998889999984 4444433 4455554311 011222
Q ss_pred eeCCCeEeecCCeeEEEEEecCC-CCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCc
Q 000580 176 QPLPEYTVPSDGVTMTCITCTDK-GRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDP 254 (1410)
Q Consensus 176 ~~~~~~sv~tdg~~v~~I~gt~~-GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~ 254 (1410)
+. +|..+ ..|++|+-+++ |..|-|-++|+|+--+-.. |+ ..-. ++| -...+
T Consensus 118 qR--~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~------------~~--c~~~----liP-----e~~~~ 169 (311)
T KOG0315|consen 118 QR--NYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGE------------NS--CTHE----LIP-----EDDTS 169 (311)
T ss_pred ch--hccCC---CCcceEEecCCcceEEeecCCCcEEEEEccC------------Cc--cccc----cCC-----CCCcc
Confidence 32 35554 46889998875 8999888899765433211 11 1111 356 34578
Q ss_pred eEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 255 IVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 255 Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
|..+.|+..-..|-.-..+|+.-||+|-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 99999999999999999999999999953
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.64 E-value=2.3e+02 Score=35.53 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=87.4
Q ss_pred cccccccc-ceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecC
Q 000580 84 LCGIFPEI-RRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSG 162 (1410)
Q Consensus 84 ~mGlFPEI-~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~ 162 (1410)
....+|+= --+=.+.|.+|.+||-+......-.+.|-...|.+|+.. +.=+.++-.+-.-.|.|--+.-
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~--------p~g~~i~Sgs~D~tvriWd~~~-- 277 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS--------PDGNLLVSGSDDGTVRIWDVRT-- 277 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec--------CCCCEEEEecCCCcEEEEeccC--
Confidence 33444554 334567889999999844322224455666666666542 2112222222223333333211
Q ss_pred CCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceeeeccCcccccccc
Q 000580 163 AGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRW 241 (1410)
Q Consensus 163 ~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~ 241 (1410)
-+.. -.++...-.|+++.-..+|+.+..+. ||.|...... +|.++|.+.
T Consensus 278 ----------~~~~----~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~---~~~~~~~~~------------- 327 (456)
T KOG0266|consen 278 ----------GECV----RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE---TGSKLCLKL------------- 327 (456)
T ss_pred ----------CeEE----EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC---CCceeeeec-------------
Confidence 0111 12223333577777788999999998 9977666533 222111111
Q ss_pred ccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 242 IVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 242 ~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+.. .-... ++..+...+....|++-+.+++++.|++..
T Consensus 328 -~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 328 -LSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred -ccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence 110 00122 678888889999999999999999999974
No 50
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=54.77 E-value=1e+02 Score=36.55 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=60.2
Q ss_pred ceeEEEEeCeEEEEecCCCCCCCccccCCC---------cceEEEEeecc--CCCc----ccccceE---EEEEeccceE
Q 000580 92 RRAWASVDNSLFLWRFDKWDGQCPEYTGEE---------QVICAVGLAKS--KPGI----FVEAIQY---LLILATPVEL 153 (1410)
Q Consensus 92 ~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~---------~~I~aV~LvkP--KpgV----F~~~I~~---lLvvaT~~~I 153 (1410)
+|.=+..+|++|+|.|.+.--+.-.||... ++.-+-.||-| |.|= +....+. ..|-|-..+|
T Consensus 105 ~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I 184 (346)
T KOG2111|consen 105 DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI 184 (346)
T ss_pred CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCce
Confidence 577788899999999985332333344322 22222233333 2221 1111222 3444555555
Q ss_pred EEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEE---EeecCC-CEEEEEEecCCccc
Q 000580 154 ILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRIL---LAGRDG-NIYELLYTTGSGWY 222 (1410)
Q Consensus 154 ~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF---~gG~DG-~lyEl~Y~~~~~Wf 222 (1410)
..+++...+ ++. -+.+|.|. +-.|--|.+|--- --|.|- +||++.++..++|.
T Consensus 185 acv~Ln~~G-----------t~v----ATaStkGT-LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 185 ACVALNLQG-----------TLV----ATASTKGT-LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred eEEEEcCCc-----------cEE----EEeccCcE-EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 555554421 122 35566665 3345556554332 233333 89999999999996
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=53.60 E-value=79 Score=39.56 Aligned_cols=168 Identities=19% Similarity=0.272 Sum_probs=97.8
Q ss_pred cccccccccccccee-EEEEeCeEEEEecCCCCCCCccccC----CCcceEEEEeeccCCCcccccceEEEEEeccceEE
Q 000580 80 EGNALCGIFPEIRRA-WASVDNSLFLWRFDKWDGQCPEYTG----EEQVICAVGLAKSKPGIFVEAIQYLLILATPVELI 154 (1410)
Q Consensus 80 q~~~~mGlFPEI~rA-W~tIDn~L~LW~Y~~~~~~~~~fd~----~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~ 154 (1410)
+..+..++=|.=.|. =-.+|+.+-+|||..-+.-+-+|-. ..|.|-++..- | .=.-+|||++...+.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-~-------Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-V-------TGDQILVVSGSAQAK 239 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-C-------CCCeEEEEecCccee
Confidence 555566666655553 3579999999999643322233433 24677666552 1 334569999999988
Q ss_pred EEE------eeecCCCC----------------------------------C-------CCCCceeEEeeCCCeEeecCC
Q 000580 155 LVG------VCCSGAGD----------------------------------G-------TDPYAEISLQPLPEYTVPSDG 187 (1410)
Q Consensus 155 Llg------v~~~~~~~----------------------------------~-------~~~~~~l~L~~~~~~sv~tdg 187 (1410)
||- +.|.++.. | ++.-+.++++-+. +-.|
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----PAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec----cCCC
Confidence 873 22221110 0 0111223333221 2223
Q ss_pred --eeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccc---cccceeeecc--CccccccccccccccccCCCCceEEEE
Q 000580 188 --VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWY---KRCRKVCHTA--GVGNVISRWIVPNVFRFGAVDPIVELV 259 (1410)
Q Consensus 188 --~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf---~rc~kinht~--g~~S~~~~~~lPs~~~~~~~d~Ivqi~ 259 (1410)
+.++..+-..+|--|.+|- ||.|-=-.| -+|+ .-|-|--|.. ++.|+ +
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~---~~~~v~p~~~vk~AH~~g~~Itsi---------------------~ 371 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK---GSRTVRPVMKVKDAHLPGQDITSI---------------------S 371 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeec---CCcccccceEeeeccCCCCceeEE---------------------E
Confidence 3444444456888787776 997644443 5676 4455556664 44443 3
Q ss_pred EeCCCceEEEEcCCCeEEEEEeCC
Q 000580 260 FDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 260 vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+-.--|+|-+++.+++++||||..
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eccccchhhhccCCCceeeeeccc
Confidence 335668999999999999999963
No 52
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.00 E-value=1.6e+02 Score=39.30 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=82.0
Q ss_pred EEEEeccceEEEEEeeecCCCCCCC---CCceeEEeeCCCeEeecCCeeEEEEEecCCCC-EEEeecCC-CEEEEEEe-c
Q 000580 144 LLILATPVELILVGVCCSGAGDGTD---PYAEISLQPLPEYTVPSDGVTMTCITCTDKGR-ILLAGRDG-NIYELLYT-T 217 (1410)
Q Consensus 144 lLvvaT~~~I~Llgv~~~~~~~~~~---~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GR-IF~gG~DG-~lyEl~Y~-~ 217 (1410)
.|.+.=+.+..++.+.......... ..+.-.|.++ +..+..|..|.-+++|+ +=+.|..| .|-||-=. .
T Consensus 43 ~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~-----~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g 117 (717)
T PF10168_consen 43 DLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPS-----NPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWG 117 (717)
T ss_pred EEEEEECCCCEEEEEeeccccccccCccccCcceeecC-----CCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccC
Confidence 4667777777777776543222111 1123344433 23458899999999999 55778877 66676211 1
Q ss_pred CCccc--cccceeeeccCccccccccccccccccCCCCceEEEEEeCC---CceEEEEcCCCeEEEEEeCCCCCCCccee
Q 000580 218 GSGWY--KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE---RQLLYARTEEMKLQVFVLGPNGDGPLKKV 292 (1410)
Q Consensus 218 ~~~Wf--~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~s---R~iLYtLs~~s~I~vY~Lg~~g~~~~~~v 292 (1410)
..|-| .+....|.|..+... +|.....-.|.|+.-=+. -.-|-.|+++++||.|++. +...+ .+|
T Consensus 118 ~~~~~~~g~~~i~Crt~~v~~~--------~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~-~~~~p-~~v 187 (717)
T PF10168_consen 118 KNGEFEDGKKEINCRTVPVDER--------FFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS-DPQHP-WQV 187 (717)
T ss_pred ccccccCCCcceeEEEEEechh--------hccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC-CCCCC-eEE
Confidence 13445 455556776544443 222234456666665443 4577799999999999996 44444 555
Q ss_pred eee
Q 000580 293 AEE 295 (1410)
Q Consensus 293 ~~~ 295 (1410)
..+
T Consensus 188 ~~~ 190 (717)
T PF10168_consen 188 LSL 190 (717)
T ss_pred EEc
Confidence 544
No 53
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=52.54 E-value=5.7e+02 Score=32.09 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEecCC-CCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCC
Q 000580 102 LFLWRFDK-WDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPE 180 (1410)
Q Consensus 102 L~LW~Y~~-~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~ 180 (1410)
+|.||.+. .-....---|.++.+.---=|-|-.. +|++..-.-.|+||.- ...++.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-------fia~~G~~G~I~lLha------------kT~eli---- 338 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-------FIAIAGNNGHIHLLHA------------KTKELI---- 338 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCC-------eEEEcccCceEEeehh------------hhhhhh----
Q ss_pred eEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEE
Q 000580 181 YTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELV 259 (1410)
Q Consensus 181 ~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~ 259 (1410)
+++...|+ ++.++-+++|++-+.+. +|.||.+.-.+ ++|-.+---.|-..- ..++
T Consensus 339 ~s~KieG~-v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-----~~~~~rf~D~G~v~g------------------ts~~ 394 (514)
T KOG2055|consen 339 TSFKIEGV-VSDFTFSSDSKELLASGGTGEVYVWNLRQ-----NSCLHRFVDDGSVHG------------------TSLC 394 (514)
T ss_pred heeeeccE-EeeEEEecCCcEEEEEcCCceEEEEecCC-----cceEEEEeecCccce------------------eeee
Q ss_pred EeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCccce
Q 000580 260 FDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWL 339 (1410)
Q Consensus 260 vD~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l 339 (1410)
+-..-.+|-+=|+.|.+.+|+...--.+. .|.-++ ...+-.+.|-++.==+-.
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~-----------~PkPik-----------~~dNLtt~Itsl~Fn~d~----- 447 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFAST-----------NPKPIK-----------TVDNLTTAITSLQFNHDA----- 447 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccC-----------CCCchh-----------hhhhhheeeeeeeeCcch-----
Q ss_pred EEEEEecCceEEEEecCCCCCCCCCccCCCCCCCCCCCCCceEEEEEe-------CCCCCCCCCCCCccccccccCCCCC
Q 000580 340 HLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTR-------PSPPLGVGGGLGFGAISLAGRNQSD 412 (1410)
Q Consensus 340 ~LVAVT~~G~RlYfs~~~~~~~s~~~~~~~g~~~~~~~P~~L~lvhVR-------~PP~~~~~~~~~~~~~~~~~~~~~~ 412 (1410)
+++||.+++. +..|+||||- +|+++.
T Consensus 448 qiLAiaS~~~----------------------------knalrLVHvPS~TVFsNfP~~n~------------------- 480 (514)
T KOG2055|consen 448 QILAIASRVK----------------------------KNALRLVHVPSCTVFSNFPTSNT------------------- 480 (514)
T ss_pred hhhhhhhhcc----------------------------ccceEEEeccceeeeccCCCCCC-------------------
Q ss_pred cccceeeeeEecCCcEEEEecCCCCcceEE
Q 000580 413 DISLKVETAYYSAGTLVLSDASPPTMSSLI 442 (1410)
Q Consensus 413 ~~~~~v~~a~Ys~G~~l~~~~~~~~~d~L~ 442 (1410)
.-..|+.--|+++.-+||.......-.||
T Consensus 481 -~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 481 -KVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred -cccceEEEEecCCCceEEeecCCCceeeE
No 54
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=51.68 E-value=69 Score=38.04 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=74.7
Q ss_pred EEEecCCCC-EE-EeecCCCEEEEEEec-CCccc---ccccee-eeccCccccccccccccccc-cCCCCceEEEEEeCC
Q 000580 192 CITCTDKGR-IL-LAGRDGNIYELLYTT-GSGWY---KRCRKV-CHTAGVGNVISRWIVPNVFR-FGAVDPIVELVFDNE 263 (1410)
Q Consensus 192 ~I~gt~~GR-IF-~gG~DG~lyEl~Y~~-~~~Wf---~rc~ki-nht~g~~S~~~~~~lPs~~~-~~~~d~Ivqi~vD~s 263 (1410)
.|-..+++| .| ++|.-|-|--|.|-. .+..| +||.|| |.--..+-. .|=.+-+ ......=|+.-+|+.
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~ 308 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPK 308 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCC
Confidence 344444433 44 445577788888853 22355 778887 333111111 0101111 123566788889999
Q ss_pred CceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCccceEEEE
Q 000580 264 RQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVA 343 (1410)
Q Consensus 264 R~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~LVA 343 (1410)
-++|-+=+.+|.|+|||+...|+.. . | . ...+.-..=|+.+|+-+ |+
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~-s-v-------~----------------~~~sd~vNgvslnP~mp--------il 355 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEV-S-V-------T----------------GNYSDTVNGVSLNPIMP--------IL 355 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcc-c-c-------c----------------ccccccccceecCcccc--------ee
Confidence 9999999999999999998777632 1 0 0 11123445577777533 46
Q ss_pred EecCceEEEEe
Q 000580 344 VLSDGRRMYLS 354 (1410)
Q Consensus 344 VT~~G~RlYfs 354 (1410)
-|+.|-|+|=-
T Consensus 356 atssGqr~f~~ 366 (406)
T KOG2919|consen 356 ATSSGQRIFKY 366 (406)
T ss_pred eeccCceeecC
Confidence 68889998854
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.19 E-value=76 Score=38.73 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEec
Q 000580 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPL 331 (1410)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pI 331 (1410)
..+|.+|++-...+.+|+...+..|+.|+....-+ +.+.+ ..-+|.+++.
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~lis--------------------------e~~~its~~i- 403 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGLIS--------------------------EEQPITSFSI- 403 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcccc--------------------------ccCceeEEEE-
Confidence 45678888888888999999999999999854211 11111 2335555544
Q ss_pred CccCccceEEEEEecCceEEEE
Q 000580 332 STLESKWLHLVAVLSDGRRMYL 353 (1410)
Q Consensus 332 s~~ES~~l~LVAVT~~G~RlYf 353 (1410)
+++.++.||-+...+++|+=
T Consensus 404 --S~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 404 --SKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred --cCCCcEEEEEcccCeeEEee
Confidence 67778999999999999873
No 56
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=46.74 E-value=5.5e+02 Score=30.21 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred cccccccceeEEEE--eCeEEEEecCCCCCCCccccCC-CcceEE-EEeeccCCCcccccceEEEEEec-cceEEEEEee
Q 000580 85 CGIFPEIRRAWASV--DNSLFLWRFDKWDGQCPEYTGE-EQVICA-VGLAKSKPGIFVEAIQYLLILAT-PVELILVGVC 159 (1410)
Q Consensus 85 mGlFPEI~rAW~tI--Dn~L~LW~Y~~~~~~~~~fd~~-~~~I~a-V~LvkPKpgVF~~~I~~lLvvaT-~~~I~Llgv~ 159 (1410)
+.+-|.=+++|++- +|++.+||++. .+.. ... ...+.. ++ -.|+--+|-++=+++.|+.- ..+|.++-+.
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~-~g~l---~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSD-DGHL---VAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECC-CCcc---cccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 34566656666544 59999999975 2221 111 111111 11 23565677777777777765 6777777774
Q ss_pred ecCCCCCCCCCceeEEeeCCCeEeecC--C-eeEEEEEecCCCCEEEee-c-CCCEEEEEEecCCccccccceeeeccCc
Q 000580 160 CSGAGDGTDPYAEISLQPLPEYTVPSD--G-VTMTCITCTDKGRILLAG-R-DGNIYELLYTTGSGWYKRCRKVCHTAGV 234 (1410)
Q Consensus 160 ~~~~~~~~~~~~~l~L~~~~~~sv~td--g-~~v~~I~gt~~GRIF~gG-~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~ 234 (1410)
... ..+++..+ .-.+|-+ + -....|.-+++||.++.+ + ++.|.-+.+..+.+=. ..+.|
T Consensus 206 ~~~--------~~~~~~~~-~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~---~~~~~---- 269 (330)
T PRK11028 206 DPH--------GEIECVQT-LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL---SFEGH---- 269 (330)
T ss_pred CCC--------CCEEEEEE-EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE---EEeEE----
Confidence 321 12222211 0011111 1 123357678888855544 4 5677777765432210 11111
Q ss_pred cccccccccccccccCCCCceEEEEEeCCCceEEEEcC-CCeEEEEEeCCC
Q 000580 235 GNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTE-EMKLQVFVLGPN 284 (1410)
Q Consensus 235 ~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~-~s~I~vY~Lg~~ 284 (1410)
+|. ......+.+++.-+.||+-.. .++|.+|++...
T Consensus 270 --------~~~------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 270 --------QPT------ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred --------Eec------cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 111 012224688888999998665 789999999754
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.12 E-value=2.2e+02 Score=34.96 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=116.3
Q ss_pred HHHHHHHHhcCCc---cccccccccccceeE----------EEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCC
Q 000580 68 TVLVERYNAAGGE---GNALCGIFPEIRRAW----------ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKP 134 (1410)
Q Consensus 68 ~ei~e~~n~~~~q---~~~~mGlFPEI~rAW----------~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKp 134 (1410)
|+++..||.-|+. ..+.-|=.-.|.+.= .+-|+.+++||.++..- ...+-|-.+.++++.+-+-..
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~-~~TLsGHtdkVt~ak~~~~~~ 274 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL-RHTLSGHTDKVTAAKFKLSHS 274 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh-hhhhcccccceeeehhhcccc
Confidence 4566666665433 123444433344332 24567899999875432 356667777788777654333
Q ss_pred Cccc---------------ccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEee----CCCeEeecCCeeEEEEEe
Q 000580 135 GIFV---------------EAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQP----LPEYTVPSDGVTMTCITC 195 (1410)
Q Consensus 135 gVF~---------------~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~----~~~~sv~tdg~~v~~I~g 195 (1410)
-|-- --.+-+|++.+-.+|..=++++-++.. + +.+.++. ++..+||..| -|+++.-
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~--D--kkvRfwD~Rs~~~~~sv~~gg-~vtSl~l 349 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHF--D--KKVRFWDIRSADKTRSVPLGG-RVTSLDL 349 (459)
T ss_pred ceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccc--c--cceEEEeccCCceeeEeecCc-ceeeEee
Confidence 1110 014567888888888775666543221 1 3455553 3358899988 6888887
Q ss_pred cCCCCEEEee-cCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCC
Q 000580 196 TDKGRILLAG-RDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEM 274 (1410)
Q Consensus 196 t~~GRIF~gG-~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s 274 (1410)
+.+|+=-+.+ +|..+-=+. -|-.-|+|+..-..+ + ...| ....++-+.+.++-+=|.+|
T Consensus 350 s~~g~~lLsssRDdtl~viD--------lRt~eI~~~~sA~g~---------k--~asD-wtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVID--------LRTKEIRQTFSAEGF---------K--CASD-WTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred ccCCeEEeeecCCCceeeee--------cccccEEEEeecccc---------c--cccc-cceeEECCCCceeeeccCCC
Confidence 8777666555 477655554 345667777533222 1 1223 56667778888999999999
Q ss_pred eEEEEEeCC
Q 000580 275 KLQVFVLGP 283 (1410)
Q Consensus 275 ~I~vY~Lg~ 283 (1410)
.|-+|++..
T Consensus 410 sv~iW~v~t 418 (459)
T KOG0288|consen 410 SVYIWSVFT 418 (459)
T ss_pred cEEEEEccC
Confidence 999999953
No 58
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=43.60 E-value=3.3e+02 Score=33.12 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=30.8
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCC-eEEEEEeCCCC
Q 000580 250 GAVDPIVELVFDNERQLLYARTEEM-KLQVFVLGPNG 285 (1410)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s-~I~vY~Lg~~g 285 (1410)
..+.+|--|+++...++|-|=|+|| .||||++ ++|
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v-~~G 206 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSV-PEG 206 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEc-CCc
Confidence 3678899999999999999999999 5899999 455
No 59
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=42.70 E-value=3.5e+02 Score=34.32 Aligned_cols=137 Identities=16% Similarity=0.221 Sum_probs=80.9
Q ss_pred EEEeCeEEEEecCCCCCCCccccCCCcceEEEEe-eccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeE
Q 000580 96 ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGL-AKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 96 ~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L-vkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
+..|++|-.-++..+.. .... .|.| ..|| |+=+..=..++||++-.+|.||-=
T Consensus 380 ~g~Dd~l~~~~~~~~~~-----t~~~----~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~---------------- 433 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGY-----TKSE----VVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQD---------------- 433 (603)
T ss_pred EecCCeEEEEecccCcc-----cccc----eeecCCCce-eEEEcCCCCEEEEEecCcEEEEec----------------
Confidence 45688888888764322 1111 1444 3565 444444445688888888877640
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCCEE-EeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCC
Q 000580 175 LQPLPEYTVPSDGVTMTCITCTDKGRIL-LAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVD 253 (1410)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gt~~GRIF-~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d 253 (1410)
+ +..+++|+ +...++++-+++|.-+ .||+||+|+=..-. .+=. .+-........
T Consensus 434 -~-~~~~~~~~-~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~--g~~l--------------------~ee~~~~~h~a 488 (603)
T KOG0318|consen 434 -Q-TKVSSIPI-GYESSAVAVSPDGSEVAVGGQDGKVHVYSLS--GDEL--------------------KEEAKLLEHRA 488 (603)
T ss_pred -C-Ccceeecc-ccccceEEEcCCCCEEEEecccceEEEEEec--CCcc--------------------cceeeeecccC
Confidence 0 12356664 5788899989887776 56679986633211 1110 11111123455
Q ss_pred ceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 254 PIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+|..+.+-+.-.+|-+=.....+-+|+...
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 666666667777777777777789999864
No 60
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=42.44 E-value=1.7e+02 Score=37.06 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=96.3
Q ss_pred cccccee--EEEEeCeEEEEecCC---CCC--C--CccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEe
Q 000580 88 FPEIRRA--WASVDNSLFLWRFDK---WDG--Q--CPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGV 158 (1410)
Q Consensus 88 FPEI~rA--W~tIDn~L~LW~Y~~---~~~--~--~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv 158 (1410)
||-..-. =++.|+.|-|||..+ ... + ..+|++-+-.|++|.+.+ +.+|+.=..+.-.|..--+
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--------n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--------NGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--------CceEEEeeccCceeeeecc
Confidence 5555544 456789999999932 111 1 257888888888887743 4566655555555554444
Q ss_pred eecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecC-CCCEEEeecCCCEEEEEEecCCc-cc-cccceeeecc-Cc
Q 000580 159 CCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTD-KGRILLAGRDGNIYELLYTTGSG-WY-KRCRKVCHTA-GV 234 (1410)
Q Consensus 159 ~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~-~GRIF~gG~DG~lyEl~Y~~~~~-Wf-~rc~kinht~-g~ 234 (1410)
--+..++ +. .+.....+. +.=-|| .+--+..++ .-|+--++.||-|+-..|..++- -| .+|.-.-|++ .+
T Consensus 374 p~n~dp~--ds-~dp~vl~~~-l~Ghtd--avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 374 PPNQDPD--DS-YDPSVLSGT-LLGHTD--AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred CCCCCcc--cc-cCcchhccc-eecccc--ceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 3111111 00 111122121 222233 233344444 35555566688777777776554 23 4444332221 10
Q ss_pred ---------ccccccc-------------ccccccccCC---CCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 235 ---------GNVISRW-------------IVPNVFRFGA---VDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 235 ---------~S~~~~~-------------~lPs~~~~~~---~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
.|+-... +++|. ..+. ...|..+|--++-.+.|+..++..|++||-.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeecccc-CCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 0110000 01110 1122 3678899999999999999999999999963
No 61
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=42.21 E-value=2.5e+02 Score=33.48 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=76.7
Q ss_pred EEEeCeEEEEecCCCCCCC-ccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeE
Q 000580 96 ASVDNSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 96 ~tIDn~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
.+-||.+.|||..+|+... +.| +..|..+.+-.-|-+ .+|+|+++=.-+-+.|++.. -.
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf---~spv~~~q~hp~k~n---------~~va~~~~~sp~vi~~s~~~--------h~ 142 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRF---DSPVWGAQWHPRKRN---------KCVATIMEESPVVIDFSDPK--------HS 142 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEc---cCccceeeeccccCC---------eEEEEEecCCcEEEEecCCc--------ee
Confidence 3568999999999887531 344 577888777555544 45666665443334444211 11
Q ss_pred EeeCCCeEeecCC---eeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccccccccC
Q 000580 175 LQPLPEYTVPSDG---VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFG 250 (1410)
Q Consensus 175 L~~~~~~sv~tdg---~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~ 250 (1410)
+.|+ ++|| ..-++.+-+..|.+-..|. -|- =+.|.. ||.-. +-+ |+..
T Consensus 143 ~Lp~-----d~d~dln~sas~~~fdr~g~yIitGtsKGk--llv~~a------------~t~e~--------vas-~rit 194 (405)
T KOG1273|consen 143 VLPK-----DDDGDLNSSASHGVFDRRGKYIITGTSKGK--LLVYDA------------ETLEC--------VAS-FRIT 194 (405)
T ss_pred eccC-----CCccccccccccccccCCCCEEEEecCcce--EEEEec------------chhee--------eee-eeec
Confidence 1111 1111 1111113345677666665 443 233433 12110 111 2323
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 251 AVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
....|+||.|---...|-.=+.+-+||+|++.
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 35678888887777777788888899999985
No 62
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=40.85 E-value=1.3e+02 Score=37.55 Aligned_cols=127 Identities=18% Similarity=0.384 Sum_probs=54.2
Q ss_pred CCCEEEeec-CCCEEEEEEecCCccc-cccceeeeccCccccccccccccccc-cCC-CCceEEEEEeCCCceEEE-EcC
Q 000580 198 KGRILLAGR-DGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFR-FGA-VDPIVELVFDNERQLLYA-RTE 272 (1410)
Q Consensus 198 ~GRIF~gG~-DG~lyEl~Y~~~~~Wf-~rc~kinht~g~~S~~~~~~lPs~~~-~~~-~d~Ivqi~vD~sR~iLYt-Ls~ 272 (1410)
.--=|.|+. .++||.+.-..+..|- +|.--|---. ...|.+|.+++ |+. +.-|++|.|=---+.||. ---
T Consensus 258 ~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~-----v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~ 332 (461)
T PF05694_consen 258 ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK-----VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL 332 (461)
T ss_dssp --EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-------SS---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc-----cCcccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence 455577776 7789988766677785 3322221000 01245666532 233 333666555555557776 445
Q ss_pred CCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCcc----ceEEEEEecCc
Q 000580 273 EMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESK----WLHLVAVLSDG 348 (1410)
Q Consensus 273 ~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~----~l~LVAVT~~G 348 (1410)
.|.|+-|||....+ + +.+.++. -|+ .+ .+. +.+.-..+ .-+.|=+.-+|
T Consensus 333 ~GdvrqYDISDP~~-P-kl~gqv~---------lGG-~~-~~~--------------~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 333 HGDVRQYDISDPFN-P-KLVGQVF---------LGG-SI-RKG--------------DHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp TTEEEEEE-SSTTS---EEEEEEE----------BT-TT-T-B----------------TTS------S----EEE-TTS
T ss_pred CCcEEEEecCCCCC-C-cEEeEEE---------ECc-Ee-ccC--------------CCccccccccCCCCCeEEEccCC
Confidence 78899999975433 3 5555441 111 00 110 11111111 34889999999
Q ss_pred eEEEEecC
Q 000580 349 RRMYLSTS 356 (1410)
Q Consensus 349 ~RlYfs~~ 356 (1410)
.|||+|++
T Consensus 386 kRlYvTnS 393 (461)
T PF05694_consen 386 KRLYVTNS 393 (461)
T ss_dssp SEEEEE--
T ss_pred eEEEEEee
Confidence 99999865
No 63
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.84 E-value=93 Score=41.23 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=46.8
Q ss_pred EEEEecCCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEE
Q 000580 191 TCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYAR 270 (1410)
Q Consensus 191 ~~I~gt~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtL 270 (1410)
.+++++.+|+|.+|..||.|+-|.=+-.. - ++|..+ ..+-+.++-+++.|++|.++
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~---------~--~~fqa~-------------~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSFQL---------I--RGFQAY-------------EQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEeccccee---------e--ehheec-------------chhhhhHhhcccCceEEEEE
Confidence 34556789999999999998877622100 0 011111 22246677888999999998
Q ss_pred cCCC-----eEEEEEeCCC
Q 000580 271 TEEM-----KLQVFVLGPN 284 (1410)
Q Consensus 271 s~~s-----~I~vY~Lg~~ 284 (1410)
.++. .++||++.+-
T Consensus 84 ~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eecCCCCceEEEEeccccc
Confidence 8754 5999999754
No 64
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=40.78 E-value=72 Score=40.26 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=52.7
Q ss_pred CeeEEEEEecCCCCEEE-eecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCc
Q 000580 187 GVTMTCITCTDKGRILL-AGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQ 265 (1410)
Q Consensus 187 g~~v~~I~gt~~GRIF~-gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~ 265 (1410)
.-.++.||.++++-|-| +.+|+.|-=++ .+..|++|+. ....+.+..|+||+.+.
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~d--------n~~~~~l~s~----------------~a~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFD--------NKTGKILHSM----------------VAHKDSVTSLAIDPNGP 544 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceeccc--------ccccccchhe----------------eeccceecceeecCCCc
Confidence 35788999998755544 44577653222 4445555541 13677888999999999
Q ss_pred eEEEEcCCCeEEEEEeCC
Q 000580 266 LLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 266 iLYtLs~~s~I~vY~Lg~ 283 (1410)
.|-+=+.++.++.|.+..
T Consensus 545 ~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEeecCCceeehhhccc
Confidence 999999999999999953
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=40.16 E-value=6.6e+02 Score=30.01 Aligned_cols=144 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred eCeEEEEe-cCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEee------------------
Q 000580 99 DNSLFLWR-FDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVC------------------ 159 (1410)
Q Consensus 99 Dn~L~LW~-Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~------------------ 159 (1410)
|..+|||| |.+.+.. ..--|=+.+|..|. |..+=.||+-..|...|...-+.
T Consensus 68 Dr~I~LWnv~gdceN~-~~lkgHsgAVM~l~--------~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENF-WVLKGHSGAVMELH--------GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred cceEEEEeccccccce-eeeccccceeEeee--------eccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Q ss_pred ----------ecCCCCCCCCCceeEEeeCCCeE------eecCCeeEEEEEecC-CCCEEEeecCCCEEEEEEecCCccc
Q 000580 160 ----------CSGAGDGTDPYAEISLQPLPEYT------VPSDGVTMTCITCTD-KGRILLAGRDGNIYELLYTTGSGWY 222 (1410)
Q Consensus 160 ----------~~~~~~~~~~~~~l~L~~~~~~s------v~tdg~~v~~I~gt~-~GRIF~gG~DG~lyEl~Y~~~~~Wf 222 (1410)
.+...++ .+.|+ .+- ...+-..++++.-.+ .-.||-||=|+.|---.-...++-
T Consensus 139 ~p~rrg~~lv~SgsdD~-----t~kl~---D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~- 209 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDG-----TLKLW---DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL- 209 (338)
T ss_pred CccccCCeEEEecCCCc-----eEEEE---eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-
Q ss_pred cccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 223 KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 223 ~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
|+.. +..|+|+.|.+=..-..|-+.+=+.++++||+-+
T Consensus 210 -------~~ls----------------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 210 -------YTLS----------------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -------EEee----------------cccCceeeEEeccCCCccccccccceEEEEEecc
No 66
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.06 E-value=27 Score=28.25 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=15.7
Q ss_pred cCCCCEEEeecCCCEEEEE
Q 000580 196 TDKGRILLAGRDGNIYELL 214 (1410)
Q Consensus 196 t~~GRIF~gG~DG~lyEl~ 214 (1410)
..+|++|+++.||+||-|.
T Consensus 19 v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 19 VAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp ECTSEEEEE-TTSEEEEEE
T ss_pred EECCEEEEEcCCCEEEEEe
Confidence 4689999999999999875
No 67
>PTZ00421 coronin; Provisional
Probab=39.76 E-value=5.6e+02 Score=32.75 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=46.6
Q ss_pred CeeEEEEEecCCC-CEEEeec-CCC--EEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeC
Q 000580 187 GVTMTCITCTDKG-RILLAGR-DGN--IYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDN 262 (1410)
Q Consensus 187 g~~v~~I~gt~~G-RIF~gG~-DG~--lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~ 262 (1410)
.-.|.+|.-++++ .+++.|. ||. ||.+. . + ++ ... + -...+.|..+.+.+
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~--t--g---~~---------~~~-----l-----~~h~~~V~sla~sp 178 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVE--R--G---KA---------VEV-----I-----KCHSDQITSLEWNL 178 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC--C--C---eE---------EEE-----E-----cCCCCceEEEEEEC
Confidence 3467788878764 5666654 884 45442 1 0 00 000 1 12356688888888
Q ss_pred CCceEEEEcCCCeEEEEEeCC
Q 000580 263 ERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 263 sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
..++|++-+.+++|++||+..
T Consensus 179 dG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCCEEEEecCCCEEEEEECCC
Confidence 888999999999999999863
No 68
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=38.94 E-value=6.4e+02 Score=30.75 Aligned_cols=175 Identities=14% Similarity=0.246 Sum_probs=98.1
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccc----------------------cceEEEEEeccceEEE
Q 000580 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVE----------------------AIQYLLILATPVELIL 155 (1410)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~----------------------~I~~lLvvaT~~~I~L 155 (1410)
-|..+-+||...+.= -...-|...++-.|++-+--|=+|-- |..-++++++.-.+-+
T Consensus 171 ~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred CCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 468899999975432 14555666777777776666666642 2234566666533322
Q ss_pred EEeeecCCCCCCCCCceeEE--eeCCCeEeec---CCeeEEEEEecC-CCCEEEeecCC--CEEEEEEecCCc-cc---c
Q 000580 156 VGVCCSGAGDGTDPYAEISL--QPLPEYTVPS---DGVTMTCITCTD-KGRILLAGRDG--NIYELLYTTGSG-WY---K 223 (1410)
Q Consensus 156 lgv~~~~~~~~~~~~~~l~L--~~~~~~sv~t---dg~~v~~I~gt~-~GRIF~gG~DG--~lyEl~Y~~~~~-Wf---~ 223 (1410)
|.-+ +.| ..+.+ ..|. ++|.+ +...|+.+.+.+ ++.|.-|+.|+ ++|.+.|-..-- -+ +
T Consensus 250 l~t~---grD-----st~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk 320 (460)
T KOG0285|consen 250 LVTG---GRD-----STIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK 320 (460)
T ss_pred EEec---CCc-----ceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence 2211 111 12222 1122 33332 446788999887 89999999999 899998854321 11 1
Q ss_pred ccceeeec---cCccc----ccccccccc--cc-ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 224 RCRKVCHT---AGVGN----VISRWIVPN--VF-RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 224 rc~kinht---~g~~S----~~~~~~lPs--~~-~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
-.+-+|.- ..+.| .|=.|=+|- |+ .++....|+--.-=++-++|.+=++||+|-.||-.
T Consensus 321 svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecC
Confidence 11222221 01111 111234443 11 23445555544444677888999999999999985
No 69
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.34 E-value=65 Score=36.87 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=40.6
Q ss_pred CCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeE
Q 000580 197 DKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKL 276 (1410)
Q Consensus 197 ~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I 276 (1410)
+.|-|||+|.||++|-..- |+|=|+|-.| +..|-|-.++--+.-.-+.+=+++|++
T Consensus 125 ~enSi~~AgGD~~~y~~dl--E~G~i~r~~r----------------------GHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDL--EDGRIQREYR----------------------GHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred CCCcEEEecCCeEEEEEEe--cCCEEEEEEc----------------------CCcceeeeeeecccCcceeecCCCccE
Confidence 4799999999999998884 3444322111 233333333333444455677889999
Q ss_pred EEEEeCC
Q 000580 277 QVFVLGP 283 (1410)
Q Consensus 277 ~vY~Lg~ 283 (1410)
|+||+..
T Consensus 181 RvWd~kt 187 (325)
T KOG0649|consen 181 RVWDTKT 187 (325)
T ss_pred EEEeccc
Confidence 9999853
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.23 E-value=3.8e+02 Score=34.77 Aligned_cols=138 Identities=12% Similarity=0.307 Sum_probs=85.3
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000580 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1410)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~ 178 (1410)
..++-||||++..-+ -.|+ |.=+.-+...|+.--+++++=+-...|-++-. + .+.-..
T Consensus 34 nG~V~IWnyetqtmV-ksfe--------V~~~PvRa~kfiaRknWiv~GsDD~~IrVfny--n----------t~ekV~- 91 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMV-KSFE--------VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY--N----------TGEKVK- 91 (794)
T ss_pred cCeeEEEecccceee-eeee--------ecccchhhheeeeccceEEEecCCceEEEEec--c----------cceeeE-
Confidence 478899999864322 3343 33345577888888888888777777777652 2 122221
Q ss_pred CCeEeecCCeeEEEEEecCCCCEEEeecCCCEEEE-EEecCCccccccceeeeccCccccccccccccccccCCCCceEE
Q 000580 179 PEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYEL-LYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVE 257 (1410)
Q Consensus 179 ~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG~lyEl-~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivq 257 (1410)
.|-...| ++.||+.+++-=-|+.++|..+..+ .| +.+|- |..+ |- +...-+-|
T Consensus 92 -~FeAH~D--yIR~iavHPt~P~vLtsSDDm~iKlW~w--e~~wa--~~qt------------------fe-GH~HyVMq 145 (794)
T KOG0276|consen 92 -TFEAHSD--YIRSIAVHPTLPYVLTSSDDMTIKLWDW--ENEWA--CEQT------------------FE-GHEHYVMQ 145 (794)
T ss_pred -Eeecccc--ceeeeeecCCCCeEEecCCccEEEEeec--cCcee--eeeE------------------Ec-CcceEEEE
Confidence 1444445 8999999999999999997754443 22 34562 2211 10 23334556
Q ss_pred EEEeCCC-ceEEEEcCCCeEEEEEeCCC
Q 000580 258 LVFDNER-QLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 258 i~vD~sR-~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
+++.+.- |-.-+=|-++||.||.+|..
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCC
Confidence 6665543 33444566788999999864
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.96 E-value=3e+02 Score=35.76 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=70.1
Q ss_pred EEeCeEEEEecCCCCC-CCccccCCCcceEEEEee-ccCCCcccccceEEEEEeccce-EEEEEeeecCCCCCCCCCcee
Q 000580 97 SVDNSLFLWRFDKWDG-QCPEYTGEEQVICAVGLA-KSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEI 173 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~-~~~~fd~~~~~I~aV~Lv-kPKpgVF~~~I~~lLvvaT~~~-I~Llgv~~~~~~~~~~~~~~l 173 (1410)
-.|.++|||||+.+-. ....| +.++.-.|+ -||-+|.- +|+... -+|++=.. .+.|
T Consensus 137 GLD~~IflWDin~~~~~l~~s~----n~~t~~sl~sG~k~siYS--------LA~N~t~t~ivsGgt---------ek~l 195 (735)
T KOG0308|consen 137 GLDRKIFLWDINTGTATLVASF----NNVTVNSLGSGPKDSIYS--------LAMNQTGTIIVSGGT---------EKDL 195 (735)
T ss_pred CCCccEEEEEccCcchhhhhhc----cccccccCCCCCccceee--------eecCCcceEEEecCc---------ccce
Confidence 3699999999987533 22344 455666665 77777653 222222 11111111 1234
Q ss_pred EEeeCC-----Ce--EeecCCeeEEEEEecCCCC-EEEeecCC--CEEEEEEecCCccccccceeeeccCcccccccccc
Q 000580 174 SLQPLP-----EY--TVPSDGVTMTCITCTDKGR-ILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIV 243 (1410)
Q Consensus 174 ~L~~~~-----~~--sv~tdg~~v~~I~gt~~GR-IF~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~l 243 (1410)
.++ +| .| .-.|| .|.++.-.++|+ +.-+++|| +||.|-= +||---++ +
T Consensus 196 r~w-Dprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-------QrCl~T~~------------v 253 (735)
T KOG0308|consen 196 RLW-DPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-------QRCLATYI------------V 253 (735)
T ss_pred EEe-ccccccceeeeecccc--ceEEEEEcCCCCeEeecCCCceEEeeeccc-------cceeeeEE------------e
Confidence 444 22 12 22455 456676678874 44455599 7777652 24433221 2
Q ss_pred ccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 244 PNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 244 Ps~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
| +|.+=.+.++++=..+|+=..++.|-.=+|-
T Consensus 254 H-------~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 254 H-------KEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred c-------cCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 2 1112223333555566777777777666664
No 72
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=36.62 E-value=1.6e+02 Score=37.32 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=42.5
Q ss_pred CCCCCCccchhHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC
Q 000580 862 CPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPES 909 (1410)
Q Consensus 862 Cpsf~s~dDv~~~KA~E~L~~Ak~~~~~~er~~~L~eAL~Lf~kv~~~ 909 (1410)
|-+||.-|+-..-.|.|.+++|=+.+|+..|-++.++||.+....++.
T Consensus 157 HQtfFtcd~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdA 204 (539)
T PF04184_consen 157 HQTFFTCDTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADA 204 (539)
T ss_pred cceeEecCCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHH
Confidence 678898777777899999999999999999999999999999876643
No 73
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=35.80 E-value=8.9e+02 Score=29.50 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=109.2
Q ss_pred CCCcccccccccCCHHHHHHHHhcCCccccccccccccceeEEEEe---CeEEEEecCCCCCCCccccCCCcceEEEEee
Q 000580 54 WPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVD---NSLFLWRFDKWDGQCPEYTGEEQVICAVGLA 130 (1410)
Q Consensus 54 w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlFPEI~rAW~tID---n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~Lv 130 (1410)
|++-+.....-+-|.+ + .. +.++.+-.|..=+|-=+++| .++++++++++.=. ......|
T Consensus 125 ~~~v~~~~h~g~~p~~--r---Q~--~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~----------~~~~~~v 187 (346)
T COG2706 125 QPVVQVVKHTGSGPHE--R---QE--SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT----------PADPAEV 187 (346)
T ss_pred ccceeeeecCCCCCCc--c---cc--CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc----------ccccccc
Confidence 6665544455555541 1 12 55678888888888888899 89999999743311 1122334
Q ss_pred ccCCC----cccccceEEEEEe-ccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeec---CCeeEEEEEecCCCCEE
Q 000580 131 KSKPG----IFVEAIQYLLILA-TPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPS---DGVTMTCITCTDKGRIL 202 (1410)
Q Consensus 131 kPKpg----VF~~~I~~lLvva-T~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~t---dg~~v~~I~gt~~GRIF 202 (1410)
||..| +|-++=|+.=||+ -..+|..++ |++. . .+++-.++ ..++|. +..--..|.-|++||.-
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~--y~~~-~-----g~~~~lQ~-i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE--YNPA-V-----GKFEELQT-IDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEE--EcCC-C-----ceEEEeee-eccCccccCCCCceeEEEECCCCCEE
Confidence 76666 8999888777766 334455554 5432 1 13333322 244444 23456788889999977
Q ss_pred EeecCC--CEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCC-eEEEE
Q 000580 203 LAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEM-KLQVF 279 (1410)
Q Consensus 203 ~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s-~I~vY 279 (1410)
..+.-| .|+ |.+|+-..|...++.. .|+ +--.=....++++-++||+..++| +|.||
T Consensus 259 YasNRg~dsI~-------------~f~V~~~~g~L~~~~~--~~t-----eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 259 YASNRGHDSIA-------------VFSVDPDGGKLELVGI--TPT-----EGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred EEecCCCCeEE-------------EEEEcCCCCEEEEEEE--ecc-----CCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 776544 222 3344433333332111 111 111123566789999999999987 89999
Q ss_pred EeCCC
Q 000580 280 VLGPN 284 (1410)
Q Consensus 280 ~Lg~~ 284 (1410)
.+.+.
T Consensus 319 ~~d~~ 323 (346)
T COG2706 319 ERDKE 323 (346)
T ss_pred EEcCC
Confidence 99754
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.69 E-value=1.2e+02 Score=41.02 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=69.1
Q ss_pred CeEeecCCeeEEEEEecCCCCEEEeecCCC---EEEEEEe-------------cCCccccccceeeeccCcc--------
Q 000580 180 EYTVPSDGVTMTCITCTDKGRILLAGRDGN---IYELLYT-------------TGSGWYKRCRKVCHTAGVG-------- 235 (1410)
Q Consensus 180 ~~sv~tdg~~v~~I~gt~~GRIF~gG~DG~---lyEl~Y~-------------~~~~Wf~rc~kinht~g~~-------- 235 (1410)
..++..+.-.|+||--++||+=|..|.|.. |||-.-. .-+.|..+|...+|+.-+.
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 456666667899999999999999988554 4776631 1123555666677874321
Q ss_pred ccccc-cccccc--c---cc-------CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 236 NVISR-WIVPNV--F---RF-------GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 236 S~~~~-~~lPs~--~---~~-------~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+++.+ .+--++ | +| +....|+.+.+|+.-+++-+.+.+.+|.||+...
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 12110 001111 1 11 2346788999999999999999999999999764
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=2.5e+02 Score=33.41 Aligned_cols=19 Identities=32% Similarity=0.763 Sum_probs=14.8
Q ss_pred ecCCCCEEEeec-CC--CEEEE
Q 000580 195 CTDKGRILLAGR-DG--NIYEL 213 (1410)
Q Consensus 195 gt~~GRIF~gG~-DG--~lyEl 213 (1410)
-|++|..+|+|. || ++|.+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEc
Confidence 368999999998 78 55555
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=34.88 E-value=6.1e+02 Score=30.97 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=86.9
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEe
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
+-|..+++|+..+. .++.-|.|.....++ |=|.++=|.++..-+.-.|++--..-.. +-..-+..+ ++.
T Consensus 167 ~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~--------G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e-~~~ 235 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQ-ALCKVMSGHNSPCTC--------GEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAE-GLE 235 (399)
T ss_pred cCCCcEEEEECCCc-ceeeEecCCCCCccc--------ccccCCCceEEEEecCceEEEEecCCCc-eeEEecccc-cCc
Confidence 35789999999764 334567775555543 6677777778888777777665432110 000000000 111
Q ss_pred eCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--------CEEEEEEecCCcc----c-cccceeeecc-C-ccccccc
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--------NIYELLYTTGSGW----Y-KRCRKVCHTA-G-VGNVISR 240 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--------~lyEl~Y~~~~~W----f-~rc~kinht~-g-~~S~~~~ 240 (1410)
.|.++...+|- +.+.|..+|-..+.+. .| +.-++.=+.+++= | .-|.++-+-. | +-.-|+-
T Consensus 236 -~~~~~~~~~~~--~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 236 -LPCISLNLAGS--TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred -CCccccccccc--eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 22244433332 2233344444443332 33 2333333333320 1 2244433221 1 1001000
Q ss_pred ccccc-cc--ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 241 WIVPN-VF--RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 241 ~~lPs-~~--~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
|=+-. -+ .+..+++|+++..++ ...|||=+.+|+|+.||--
T Consensus 313 yD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 313 YDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred EecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence 00000 01 224678999999999 8999999999999999974
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.45 E-value=3.4e+02 Score=34.50 Aligned_cols=171 Identities=15% Similarity=0.307 Sum_probs=96.0
Q ss_pred ccccCCHHHHHHHHhcCCcccccccc--ccc-cceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccc
Q 000580 62 DTWDLPTVLVERYNAAGGEGNALCGI--FPE-IRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFV 138 (1410)
Q Consensus 62 ~~~~lP~ei~e~~n~~~~q~~~~mGl--FPE-I~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~ 138 (1410)
..+..|..+++-++ . ++..-||| =|. -.-|=---||.+++||+...... ..|++....+.|++...=.+|+.
T Consensus 285 ~dvR~~~~~~~~~~-~--H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~-~~~~~H~aAVKA~awcP~q~~lL- 359 (484)
T KOG0305|consen 285 HDVRISQHVVSTLQ-G--HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK-FTFTEHTAAVKALAWCPWQSGLL- 359 (484)
T ss_pred EEEecchhhhhhhh-c--ccceeeeeEECCCCCeeccCCCccceEeccCCCcccc-EEEeccceeeeEeeeCCCccCce-
Confidence 45788888888332 2 33444443 110 00112236899999999655544 67888888888888766555543
Q ss_pred ccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCCCEEEEEEecC
Q 000580 139 EAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTG 218 (1410)
Q Consensus 139 ~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~~ 218 (1410)
+.. .| ..+.-+.+.++. -|..+.+|- -| +-|.-|.|.
T Consensus 360 ------------------AsG-----GG-s~D~~i~fwn~~------~g~~i~~vd--------tg---sQVcsL~Ws-- 396 (484)
T KOG0305|consen 360 ------------------ATG-----GG-SADRCIKFWNTN------TGARIDSVD--------TG---SQVCSLIWS-- 396 (484)
T ss_pred ------------------EEc-----CC-CcccEEEEEEcC------CCcEecccc--------cC---CceeeEEEc--
Confidence 221 11 112456666543 233333331 11 134444433
Q ss_pred CccccccceeeeccCccc-cccccccccc----cccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000580 219 SGWYKRCRKVCHTAGVGN-VISRWIVPNV----FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 219 ~~Wf~rc~kinht~g~~S-~~~~~~lPs~----~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
++-+.++-|.|++- .+.-|-.|++ -..+...+|..++.-+.-..+-|=+.+.|+++|.+-..
T Consensus 397 ----k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 397 ----KKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ----CCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 33344444444421 1222334553 11246677888888888888888888999999999654
No 78
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=33.76 E-value=1.5e+02 Score=36.51 Aligned_cols=139 Identities=19% Similarity=0.302 Sum_probs=93.0
Q ss_pred cceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCC-C-CC
Q 000580 91 IRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGD-G-TD 168 (1410)
Q Consensus 91 I~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~-~-~~ 168 (1410)
.+-|=.+-|+..-||++++.... ..+.|-.+-|..|+ |.++=+||. --||+.+-- . -.
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l-~~l~gH~~RVs~Va--------fHPsG~~L~-----------TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPL-QDLEGHLARVSRVA--------FHPSGKFLG-----------TASFDSTWRLWDLE 291 (459)
T ss_pred cceeeeccCCceeeeccCCCcch-hhhhcchhhheeee--------ecCCCceee-----------ecccccchhhcccc
Confidence 47899999999999999875443 56777677777776 444445443 334443210 0 00
Q ss_pred CCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-C--CCEEEEEEecCCccccccceeeeccCcccccccccccc
Q 000580 169 PYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-D--GNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPN 245 (1410)
Q Consensus 169 ~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-D--G~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs 245 (1410)
...|+-++ .. -+ -.|.+|+...+|-+-..|. | |.||.+-= .|| |.
T Consensus 292 tk~ElL~Q-EG-Hs-----~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-------gr~--im---------------- 339 (459)
T KOG0272|consen 292 TKSELLLQ-EG-HS-----KGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-------GRC--IM---------------- 339 (459)
T ss_pred cchhhHhh-cc-cc-----cccceeEecCCCceeeccCccchhheeeccc-------CcE--EE----------------
Confidence 11344444 33 33 4567888889999998886 5 47877650 111 10
Q ss_pred ccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 246 VFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 246 ~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
+| -+..++|..+..++..-.|-|=|++++++||||-
T Consensus 340 ~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 340 FL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred Ee-cccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 12 2467889999999999999999999999999995
No 79
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.66 E-value=90 Score=31.44 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhcc
Q 000580 1089 YFDLLARYYVLKRQHLLAAHVLLRLAER 1116 (1410)
Q Consensus 1089 ~~DLLWryy~k~~~~~~AA~VL~~LA~~ 1116 (1410)
.+.-|.-+|..+|.|.+|-+.|.+|++.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 4677888999999999999999999993
No 80
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.52 E-value=8.5e+02 Score=30.52 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCCcceEEEEeeccCCCcccccc-eEEEEEeccceEEEEEeeecCC
Q 000580 119 GEEQVICAVGLAKSKPGIFVEAI-QYLLILATPVELILVGVCCSGA 163 (1410)
Q Consensus 119 ~~~~~I~aV~LvkPKpgVF~~~I-~~lLvvaT~~~I~Llgv~~~~~ 163 (1410)
++++.|+.|.. |-|+..- ...|+|=.|..+.++.|....+
T Consensus 69 ~l~~PILqv~~-----G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 69 QLKDPILQVEC-----GKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred ecCCcEEEEEe-----ccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 46778888877 6676643 3468889999999999977643
No 81
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=33.47 E-value=2.9e+02 Score=35.78 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=88.2
Q ss_pred EEEEeCeEEEEecCCCCCCC-----ccccCCCcceEEEEeeccCCC--ccccc----ceE--EEEEeccceEEEEEeeec
Q 000580 95 WASVDNSLFLWRFDKWDGQC-----PEYTGEEQVICAVGLAKSKPG--IFVEA----IQY--LLILATPVELILVGVCCS 161 (1410)
Q Consensus 95 W~tIDn~L~LW~Y~~~~~~~-----~~fd~~~~~I~aV~LvkPKpg--VF~~~----I~~--lLvvaT~~~I~Llgv~~~ 161 (1410)
=-+.+..+.+||-..+.+.. ..-..-+..+++|-=++=+.+ +|.-. |.+ +=.+..|+++.++.....
T Consensus 260 gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~ 339 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH 339 (555)
T ss_pred eeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc
Confidence 34567999999998755521 111233555666555554444 22211 111 112334455544444332
Q ss_pred CCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCC--CEEEEEEecCCccc---------------cc
Q 000580 162 GAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWY---------------KR 224 (1410)
Q Consensus 162 ~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG--~lyEl~Y~~~~~Wf---------------~r 224 (1410)
..... .....-| .|+-+. +....-|+||+.|-||-|.+-| .=+|..|..-.+.. .+
T Consensus 340 ~~~~~-----~~~~~~t-~~~F~~-~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 340 KGQQS-----SKAVGAT-SLKFEP-TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccccc-----cccccee-eEeecc-CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccc
Confidence 11110 1111111 133222 2456689999999999987743 22223333322211 00
Q ss_pred --------cceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEE-EcCCCeEEEEEeCCCCCCC
Q 000580 225 --------CRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYA-RTEEMKLQVFVLGPNGDGP 288 (1410)
Q Consensus 225 --------c~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYt-Ls~~s~I~vY~Lg~~g~~~ 288 (1410)
+-||.+... . .-|.++.....+.+..+.==++|-.++. -..+|+|.+|||-.+-.++
T Consensus 413 ~fls~gDW~vriWs~~~--~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDV--I-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eeeeeccceeEeccccC--C-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 112222110 0 1233322345666777777789965555 5559999999997655444
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.40 E-value=3.5e+02 Score=32.42 Aligned_cols=127 Identities=17% Similarity=0.322 Sum_probs=79.1
Q ss_pred EEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccc
Q 000580 146 ILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWY 222 (1410)
Q Consensus 146 vvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf 222 (1410)
+|+-+.|=+|+|+.....+.+.......+|.|+ |+-+.+-..+++++. +||--..|. |. .||.+.=..+-|=.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~l--F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPL--FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecc--ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence 466677888999999887755444466788864 777777667777754 355445554 66 56666644444422
Q ss_pred cccceeeeccCc--------cc--c---------ccccccccc-----cccCCCCceEEEEEeCCCceEEEEcCCCeEEE
Q 000580 223 KRCRKVCHTAGV--------GN--V---------ISRWIVPNV-----FRFGAVDPIVELVFDNERQLLYARTEEMKLQV 278 (1410)
Q Consensus 223 ~rc~kinht~g~--------~S--~---------~~~~~lPs~-----~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~v 278 (1410)
+.|+..+ .| . |.-|=+-++ ++ .....|..|.|-++-++--++..+.+++.
T Consensus 80 -----l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 80 -----LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred -----eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeee
Confidence 1121100 00 0 010111111 11 23456999999999999999999999999
Q ss_pred EEeC
Q 000580 279 FVLG 282 (1410)
Q Consensus 279 Y~Lg 282 (1410)
|+|=
T Consensus 154 WNLV 157 (362)
T KOG0294|consen 154 WNLV 157 (362)
T ss_pred ehhh
Confidence 9994
No 83
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=32.56 E-value=1.1e+02 Score=35.11 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=43.8
Q ss_pred cCCCCEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCe
Q 000580 196 TDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMK 275 (1410)
Q Consensus 196 t~~GRIF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~ 275 (1410)
+.+-++++|.++| ||-..++...+| ... ....+|.||.|=++-++|..|+. +.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~-------------~~i------------~~~~~I~ql~vl~~~~~llvLsd-~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP-------------TRI------------LKLSSITQLSVLPELNLLLVLSD-GQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc-------------eeE------------eecceEEEEEEecccCEEEEEcC-Cc
Confidence 3467888887788 776665433333 111 11222999999999999999998 89
Q ss_pred EEEEEeCC
Q 000580 276 LQVFVLGP 283 (1410)
Q Consensus 276 I~vY~Lg~ 283 (1410)
+.+|+|..
T Consensus 58 l~~~~L~~ 65 (275)
T PF00780_consen 58 LYVYDLDS 65 (275)
T ss_pred cEEEEchh
Confidence 99999963
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=32.49 E-value=1.8e+02 Score=36.68 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=56.4
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCc---ccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeE
Q 000580 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGI---FVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgV---F~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
-|+.|-|||..+...-...+ .+|--|+|+. |-++=+ ++|-|-+..+... ...|.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~---------tgL~t~~~~tdc~FSPd~k----------li~TGtS~~~~~~----~g~L~ 440 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVR---------TGLPTPFPGTDCCFSPDDK----------LILTGTSAPNGMT----AGTLF 440 (641)
T ss_pred CCCceeeeeccccccchhhh---------cCCCccCCCCccccCCCce----------EEEecccccCCCC----CceEE
Confidence 57999999998643221233 3445566653 443333 3333433322111 12343
Q ss_pred EeeCC----CeEeecCCeeEEEEEecCC-CCEEEeecCCCEEEEEEecCCc
Q 000580 175 LQPLP----EYTVPSDGVTMTCITCTDK-GRILLAGRDGNIYELLYTTGSG 220 (1410)
Q Consensus 175 L~~~~----~~sv~tdg~~v~~I~gt~~-GRIF~gG~DG~lyEl~Y~~~~~ 220 (1410)
+|... .+.|+.++..|..+.=++. ..||.|+.||.+| +.|....+
T Consensus 441 f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~-vyYdp~~S 490 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH-VYYDPNES 490 (641)
T ss_pred EEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceE-EEECcccc
Confidence 33211 2677788887777777774 9999999999876 44554443
No 85
>PTZ00420 coronin; Provisional
Probab=32.35 E-value=2.9e+02 Score=35.92 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=16.7
Q ss_pred EEecCCCCEEEeec-CCCEEEEEEe
Q 000580 193 ITCTDKGRILLAGR-DGNIYELLYT 216 (1410)
Q Consensus 193 I~gt~~GRIF~gG~-DG~lyEl~Y~ 216 (1410)
..-.++|.+|++|+ ||+|+=..+.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEcc
Confidence 33356899999997 9966555544
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=31.40 E-value=8.5e+02 Score=31.95 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=99.0
Q ss_pred ccccccccceeEEEEeCeEEEEecCCCCCCC----ccccCCCcceEEEEeeccCCCccccc-c---eEEEEEeccceEEE
Q 000580 84 LCGIFPEIRRAWASVDNSLFLWRFDKWDGQC----PEYTGEEQVICAVGLAKSKPGIFVEA-I---QYLLILATPVELIL 155 (1410)
Q Consensus 84 ~mGlFPEI~rAW~tIDn~L~LW~Y~~~~~~~----~~fd~~~~~I~aV~LvkPKpgVF~~~-I---~~lLvvaT~~~I~L 155 (1410)
+--.||-=.|+=++.-++|++--|.++.+.. ..-.|.-+.+.=.+|.-|++..|... | -.++++.|+.+..|
T Consensus 328 ~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~i 407 (691)
T KOG2048|consen 328 QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKI 407 (691)
T ss_pred ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEE
Confidence 4456777777777777777654443322110 00011123333344444444444331 2 24789999999999
Q ss_pred EEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEec-CCCCEEEeec-CCCEEEEEEecCCccccccceeeeccC
Q 000580 156 VGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCT-DKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAG 233 (1410)
Q Consensus 156 lgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt-~~GRIF~gG~-DG~lyEl~Y~~~~~Wf~rc~kinht~g 233 (1410)
+-+.+++ .+.+.... -+++-....+.|.-| ++.-+|+... ++.+.+++-....+= +
T Consensus 408 y~L~~~~---------~vk~~~v~--~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k--------e--- 465 (691)
T KOG2048|consen 408 YRLQPDP---------NVKVINVD--DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK--------E--- 465 (691)
T ss_pred EEeccCc---------ceeEEEec--cchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh--------h---
Confidence 9998864 12222222 123333456677667 4677888885 556655553321111 1
Q ss_pred ccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000580 234 VGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 234 ~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~ 283 (1410)
+.++ -|. ...+.|..|++-+-.+.+-+++..|.|-||+|..
T Consensus 466 l~~~-----~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 466 LKSI-----QSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred hhcc-----ccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 1111 221 4678899999999999999999999999999963
No 87
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=30.89 E-value=4.5e+02 Score=31.20 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=82.9
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000580 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1410)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~ 178 (1410)
|.+.-|||.+.+--. ..|.|-.--|.++.|.+--++.|+.-= -.....|--+ + .....+.
T Consensus 165 D~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~-------cD~~aklWD~---------R--~~~c~qt- 224 (343)
T KOG0286|consen 165 DMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGG-------CDKSAKLWDV---------R--SGQCVQT- 224 (343)
T ss_pred CceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecc-------cccceeeeec---------c--CcceeEe-
Confidence 556679999976543 678888888999888766888885310 0000001000 0 1122220
Q ss_pred CCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCce
Q 000580 179 PEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPI 255 (1410)
Q Consensus 179 ~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~I 255 (1410)
| +.+...|+.|.-.++|-=|..|+ || .+|.|-=- |.....+. -...-+|
T Consensus 225 --F--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD--------~~~a~ys~----------------~~~~~gi 276 (343)
T KOG0286|consen 225 --F--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD--------QELAVYSH----------------DSIICGI 276 (343)
T ss_pred --e--cccccccceEEEccCCCeeeecCCCceeEEEeecCC--------cEEeeecc----------------CcccCCc
Confidence 2 23446799999999999999998 55 66666521 11111110 0123345
Q ss_pred EEEEEeCCCceEEEEcCCCeEEEEEe
Q 000580 256 VELVFDNERQLLYARTEEMKLQVFVL 281 (1410)
Q Consensus 256 vqi~vD~sR~iLYtLs~~s~I~vY~L 281 (1410)
..+.+--+-.+||+=-.+.++.|||-
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeec
Confidence 56666678889999888999999996
No 88
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=29.99 E-value=2.6e+02 Score=37.93 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=98.5
Q ss_pred eEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccce--EEEEEeccceEEEEEeeecCCCCCCCCCc
Q 000580 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQ--YLLILATPVELILVGVCCSGAGDGTDPYA 171 (1410)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~--~lLvvaT~~~I~Llgv~~~~~~~~~~~~~ 171 (1410)
+-..++..+-.|+|.-.=.-++..-.....+.-..+.-++|.--.+.+. ++|+=++.-++++++++-...
T Consensus 405 ~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~-------- 476 (967)
T KOG0974|consen 405 ASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND-------- 476 (967)
T ss_pred hhhccCCcchhhhhhcccccccceeEEeeeeeeccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc--------
Confidence 3445677777788753111112122233334444555566666555554 778778888899999854321
Q ss_pred eeEEeeCCCeEeecCCeeEEEEEecCCCCEEEe-ecCCCEEEEEEecCC--ccc-cccceeeeccCcccccccccccccc
Q 000580 172 EISLQPLPEYTVPSDGVTMTCITCTDKGRILLA-GRDGNIYELLYTTGS--GWY-KRCRKVCHTAGVGNVISRWIVPNVF 247 (1410)
Q Consensus 172 ~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~g-G~DG~lyEl~Y~~~~--~Wf-~rc~kinht~g~~S~~~~~~lPs~~ 247 (1410)
...+.--|...+.+. -.++++.+.++--+|+. |+||..--|.|.... -|+ +=|.|.+|+.-.+-. +|.+|
T Consensus 477 ~~~~~~~~~~~~~~~-~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~-----~~~~~ 550 (967)
T KOG0974|consen 477 DIVLSLSRSHELDTG-SSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGA-----LPSKF 550 (967)
T ss_pred cceeeccCccccccc-ccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecc-----hhhhh
Confidence 122221123455554 35777777788888855 568866666665555 488 888899888533224 67654
Q ss_pred c-cCCCCceEEEEEeCCCceEEEEcCCCe
Q 000580 248 R-FGAVDPIVELVFDNERQLLYARTEEMK 275 (1410)
Q Consensus 248 ~-~~~~d~Ivqi~vD~sR~iLYtLs~~s~ 275 (1410)
. -++..-+..++ ++--+||..+..-+
T Consensus 551 ~~~k~n~~~~gf~--st~f~l~n~T~~~~ 577 (967)
T KOG0974|consen 551 INWKGNLLIVGFY--STSFILWNETNETP 577 (967)
T ss_pred ccCCCceEEEEEE--eccceEeccccCce
Confidence 2 23455566666 88888888877655
No 89
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=29.51 E-value=5.8e+02 Score=34.71 Aligned_cols=129 Identities=11% Similarity=0.126 Sum_probs=77.6
Q ss_pred CeeEEEEEecCCCCEEEeecCCCEEEEEEec--CCccccccceeeeccCccccccccccccccccCCCCceEEEEE-e--
Q 000580 187 GVTMTCITCTDKGRILLAGRDGNIYELLYTT--GSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVF-D-- 261 (1410)
Q Consensus 187 g~~v~~I~gt~~GRIF~gG~DG~lyEl~Y~~--~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~v-D-- 261 (1410)
...+..+.++...+|++..++|.+|-+.=.. +.+| -++|. . +..++.+...+.|+.+.. +
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r--------~~~G~--~-----i~~ll~L~~~E~Iv~~i~~~~~ 599 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASR--------TAKGK--P-----IVNLLPLQPDERITAILSVKEF 599 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCc--------CCCCc--C-----HHHhccCCCCCeEEEEEEeccC
Confidence 3556666777889999999999999883110 1123 12232 1 222334567888888775 2
Q ss_pred CCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCccceEE
Q 000580 262 NERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHL 341 (1410)
Q Consensus 262 ~sR~iLYtLs~~s~I~vY~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~L 341 (1410)
+....|+.+|++|-|.--.+..-... ++ .+. . . ......=.++++.++... =++
T Consensus 600 ~~~~~lvliT~~GyiKRi~l~~~~~~--~r--------------~G~--~---a-iklke~D~lv~v~~~~~~----d~l 653 (800)
T TIGR01063 600 DDGLYLFFATKNGVVKKTSLTEFSNI--RS--------------NGI--I---A-IKLDDGDELISVRLTSGD----DEV 653 (800)
T ss_pred CCCCEEEEEeCCCEEEEEEhHHhhhh--cc--------------CCc--c---c-ccCCCCCEEEEEEEeCCC----CEE
Confidence 34568999999988877776421100 00 000 0 0 111223467888777643 259
Q ss_pred EEEecCceEEEEecC
Q 000580 342 VAVLSDGRRMYLSTS 356 (1410)
Q Consensus 342 VAVT~~G~RlYfs~~ 356 (1410)
+.+|++|.=+.|...
T Consensus 654 ll~Ts~Gr~~r~~v~ 668 (800)
T TIGR01063 654 MLGSKNGKAVRFPEE 668 (800)
T ss_pred EEEECCCcEEEEEhh
Confidence 999999988888764
No 90
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.50 E-value=6.7e+02 Score=34.00 Aligned_cols=65 Identities=18% Similarity=0.424 Sum_probs=41.4
Q ss_pred cCCCCEEEeecCC-CEEEEEEecCCccc-cccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCC
Q 000580 196 TDKGRILLAGRDG-NIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEE 273 (1410)
Q Consensus 196 t~~GRIF~gG~DG-~lyEl~Y~~~~~Wf-~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~ 273 (1410)
+++--+|..|.|. .|-=-.|....-|- .-|| +|.++.+|+ .+++..+++-+-+++
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr--gH~nnVssv---------------------lfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR--GHYNNVSSV---------------------LFHPHQDLILSNSED 271 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhh--cccCCcceE---------------------EecCccceeEecCCC
Confidence 3444678878754 32222344555676 5565 466655555 334566777888999
Q ss_pred CeEEEEEeCC
Q 000580 274 MKLQVFVLGP 283 (1410)
Q Consensus 274 s~I~vY~Lg~ 283 (1410)
.+|+|||+..
T Consensus 272 ksirVwDm~k 281 (1202)
T KOG0292|consen 272 KSIRVWDMTK 281 (1202)
T ss_pred ccEEEEeccc
Confidence 9999999975
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=28.61 E-value=1e+03 Score=28.64 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCEEEeec-CCCEE
Q 000580 189 TMTCITCTDKGRILLAGR-DGNIY 211 (1410)
Q Consensus 189 ~v~~I~gt~~GRIF~gG~-DG~ly 211 (1410)
.|+++.-+++|++|..|+ ||+|-
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIK 286 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEE
Confidence 588999899999999997 99864
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=28.46 E-value=5.1e+02 Score=30.55 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=58.7
Q ss_pred cceeEEEEeCeEEEEecCCCCC-CC-ccccCCCcceEEEEeeccCCCcccccceEEEEEecc-ceEEEEEeeecCCCCCC
Q 000580 91 IRRAWASVDNSLFLWRFDKWDG-QC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATP-VELILVGVCCSGAGDGT 167 (1410)
Q Consensus 91 I~rAW~tIDn~L~LW~Y~~~~~-~~-~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~-~~I~Llgv~~~~~~~~~ 167 (1410)
=++.=++++++|++|++..... .. +.++ .+-.|+++...+ ..++|++- ..|.++...-. .
T Consensus 98 ~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~-----------~~I~vgD~~~sv~~~~~~~~--~--- 160 (321)
T PF03178_consen 98 NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFK-----------NYILVGDAMKSVSLLRYDEE--N--- 160 (321)
T ss_dssp TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET-----------TEEEEEESSSSEEEEEEETT--T---
T ss_pred CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEeccc-----------cEEEEEEcccCEEEEEEEcc--C---
Confidence 5678899999999999986551 10 2222 233555555542 23555554 44666654321 0
Q ss_pred CCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecC
Q 000580 168 DPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTG 218 (1410)
Q Consensus 168 ~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~ 218 (1410)
..+.+.. -......++++..-.+++.|+++. +|||+=+.|..+
T Consensus 161 ---~~l~~va-----~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 161 ---NKLILVA-----RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ---E-EEEEE-----EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred ---CEEEEEE-----ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 2344443 333445667766554446777776 999999999753
No 93
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.35 E-value=2.1e+02 Score=36.18 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=53.8
Q ss_pred eeEEEEEecCCCC-EEEeecCC-CEEEEEE-ecCCccc--cccceeeeccCccccccccccccccccCCCCceEEEEEeC
Q 000580 188 VTMTCITCTDKGR-ILLAGRDG-NIYELLY-TTGSGWY--KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDN 262 (1410)
Q Consensus 188 ~~v~~I~gt~~GR-IF~gG~DG-~lyEl~Y-~~~~~Wf--~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~ 262 (1410)
..|..|-.+++|- +-+.|.+| +|-||-- -..+|.| +|-.-+|.|.++.+-|... -|++ .+.|..--+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~l-------tl~Qa~WHP 175 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSL-------TLKQAAWHP 175 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCce-------eeeeccccC
Confidence 4566777777765 45788899 8888832 2345566 6777888888776653211 0221 111221111
Q ss_pred C---CceEEEEcCCCeEEEEEeCCC
Q 000580 263 E---RQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 263 s---R~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
. -.-|-.|+++++||+|++..+
T Consensus 176 ~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 176 SSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CccCCceEEEEecCcEEEEEecCCc
Confidence 1 124667889999999999754
No 94
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.62 E-value=5.7e+02 Score=33.42 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=75.1
Q ss_pred eeccCCCcccc-cceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCCEEEeecC
Q 000580 129 LAKSKPGIFVE-AIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRD 207 (1410)
Q Consensus 129 LvkPKpgVF~~-~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~D 207 (1410)
-+.+---+++. +=+|+-|+.|-..|+++-+.-. +.+... --++.+ ++...+.....+|+-..-.|
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~----------~~~~l~---~rln~~-vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETL----------ESHLLK---VRLNID-VTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred CCCcceeEEEcCCCCEEEEEeccceEEEEEcccc----------eeecch---hccCcc-eeeeeccccccCcEEEEecC
Confidence 33344445554 3478888888888888876421 222221 011222 23333333457999999999
Q ss_pred CCEEEEEEecCC--ccccccceeeeccCccccccccccccccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 208 GNIYELLYTTGS--GWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 208 G~lyEl~Y~~~~--~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
+.|||+.-+.+. .|+ |-|- .+ +|..+. .-.++|..+.+|+.+....-+.....+-+.|.+
T Consensus 540 nQv~efdi~~~~l~~ws----~~nt-~n---------lpk~~~-~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 540 NQVFEFDIEARNLTRWS----KNNT-RN---------LPKEPK-TLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred CeEEEEecchhhhhhhh----hccc-cc---------cccChh-hcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 999999985443 352 1121 11 555432 356788889999888877777777676666654
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.34 E-value=7.9e+02 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=26.5
Q ss_pred CCCCcEEEEEecCccCccceEEEEEecCceEEEE
Q 000580 320 STKPSVVSISPLSTLESKWLHLVAVLSDGRRMYL 353 (1410)
Q Consensus 320 ~~~~~IVsI~pIs~~ES~~l~LVAVT~~G~RlYf 353 (1410)
.+..+|+....=.+-|..+.+.+++-.+-.+.|-
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 4567889888888889999998887777666663
No 96
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=26.87 E-value=8.4e+02 Score=32.66 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=93.6
Q ss_pred eEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEE-eeecCCCCCCCCC--
Q 000580 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVG-VCCSGAGDGTDPY-- 170 (1410)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llg-v~~~~~~~~~~~~-- 170 (1410)
|=.-|..++.|||+.-+.-+ ..+..-...|.-+.-|.-|+. .-..||+|.-|..|+|.. .+-. .-..-.+
T Consensus 83 AsaD~~GrIil~d~~~~s~~-~~l~~~~~~~qdl~W~~~rd~----Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~ 155 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVI-NWLSHSNDSVQDLCWVPARDD----SRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSH 155 (1062)
T ss_pred EeccccCcEEEEEehhhhhh-hhhcCCCcchhheeeeeccCc----chheeEEecCCcEEEEEEccCCc--eeeccccCC
Confidence 44456799999999876554 567776777777766654431 123467777788888873 2110 0000000
Q ss_pred ceeEEeeCCCeEeecCCeeEEEE-EecCCCCEEEe----ec--CCCEEEEEEecCCccc---cc--cceeeecc-Ccccc
Q 000580 171 AEISLQPLPEYTVPSDGVTMTCI-TCTDKGRILLA----GR--DGNIYELLYTTGSGWY---KR--CRKVCHTA-GVGNV 237 (1410)
Q Consensus 171 ~~l~L~~~~~~sv~tdg~~v~~I-~gt~~GRIF~g----G~--DG~lyEl~Y~~~~~Wf---~r--c~kinht~-g~~S~ 237 (1410)
.-+. ....|-..-..+ +-+..|-+|-+ .+ |+-..|++-+++-+=. +| ...+-||+ ..+-+
T Consensus 156 ~iLs-------~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 156 EILS-------CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccee-------eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 1122 111121112222 22345555533 22 6677777777652211 11 01122333 11111
Q ss_pred ccc-----cccccc------------ccc--------------CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCC
Q 000580 238 ISR-----WIVPNV------------FRF--------------GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGD 286 (1410)
Q Consensus 238 ~~~-----~~lPs~------------~~~--------------~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~ 286 (1410)
++. .+.|.. +-| ++--+++|+-=|..|..||.|++||.|.+|.=....+
T Consensus 229 fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~ 308 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT 308 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCc
Confidence 110 012221 000 2235699999999999999999999998888654433
Q ss_pred CC
Q 000580 287 GP 288 (1410)
Q Consensus 287 ~~ 288 (1410)
.+
T Consensus 309 ~f 310 (1062)
T KOG1912|consen 309 EF 310 (1062)
T ss_pred cc
Confidence 33
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=26.09 E-value=9.5e+02 Score=32.81 Aligned_cols=227 Identities=17% Similarity=0.127 Sum_probs=126.9
Q ss_pred cccccccCch-hhHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhH---hhHHHHHHHhhcCC-ChHH
Q 000580 817 TFCQLVCSEE-GDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKF---FLAVECLERAAVTS-DSEE 891 (1410)
Q Consensus 817 tF~dLv~~~~-g~~l~k~Li~aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~---~KA~E~L~~Ak~~~-~~~e 891 (1410)
.|+.++...- ..++..+++.+|.+. | +-..+..|...=|.+|+.+|..- .+|.|.++.|.... +..+
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~-----~---~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRN-----R---IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-----C---CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 4555555432 368888888888652 2 34668889999999999999654 66777777775443 3456
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCCcccCCcchhHHHHHHHHHHHHHHHHHH
Q 000580 892 KENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITS 971 (1410)
Q Consensus 892 r~~~L~eAL~Lf~kv~~~~~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~ 971 (1410)
|-..+..||..+++.-... ..+|...+.- +---.+|-.+..+|.+ |+.|.+
T Consensus 263 r~~~~d~ala~~~~l~~~~---------------------------~~~p~~~~~~-~~~~~Drl~aL~~r~r-~~~vi~ 313 (822)
T PRK14574 263 RFDIADKALADYQNLLTRW---------------------------GKDPEAQADY-QRARIDRLGALLVRHQ-TADLIK 313 (822)
T ss_pred hHHHHHHHHHHHHHHHhhc---------------------------cCCCccchHH-HHHHHHHHHHHHHhhh-HHHHHH
Confidence 6677777777765532110 0112111100 0001123334444544 666666
Q ss_pred HHHhhhccCCCCCCCCCCCCCC-----C---CCCCCHHHHHHHHHHHHHHHhcCC-------CchH-HHHHHHHHHHcCC
Q 000580 972 ALRSLKGDSSQREFGSPVRPAG-----P---RSALDPASRKKYICQIVQLGVQSP-------DRIF-HEYLYRTMIDLGL 1035 (1410)
Q Consensus 972 ~L~~l~~~~~~~~~~~p~~~~~-----~---~~~~~~~~~~~~~~~i~~~al~S~-------DelF-H~~LYdWLi~~~~ 1035 (1410)
..+.|..... + +|+= + ...-.|..+ ..+|+.+++.+ |++. +..||--+++.+.
T Consensus 314 ~y~~l~~~~~---~----~P~y~~~a~adayl~~~~P~kA----~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 314 EYEAMEAEGY---K----MPDYARRWAASAYIDRRLPEKA----APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHHHhhhcCC---C----CCHHHHHHHHHHHHhcCCcHHH----HHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 6666653210 0 0100 0 001112222 23566666644 3333 6778888888776
Q ss_pred c-------cccccccCCC-hHHHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhHHHHHHHHHHhhhcHHHHH
Q 000580 1036 E-------NELLEYGGPD-LVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAA 1107 (1410)
Q Consensus 1036 ~-------d~LLei~sPf-Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA 1107 (1410)
- +++.+ .+|+ +..| |.++..-+++=.+..-|+-++|...|++.+|=
T Consensus 383 ~~~A~~~l~~~~~-~~p~~~~~~-------------------------~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 383 LDKAYQFAVNYSE-QTPYQVGVY-------------------------GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred HHHHHHHHHHHHh-cCCcEEecc-------------------------CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 4 34443 2442 1111 11112224555667778999999999999999
Q ss_pred HHHHHHhccc
Q 000580 1108 HVLLRLAERR 1117 (1410)
Q Consensus 1108 ~VL~~LA~~~ 1117 (1410)
+.|.+|+..-
T Consensus 437 ~~le~l~~~a 446 (822)
T PRK14574 437 KKLEDLSSTA 446 (822)
T ss_pred HHHHHHHHhC
Confidence 9999997753
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.77 E-value=7.2e+02 Score=31.37 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=44.1
Q ss_pred cCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecC
Q 000580 118 TGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTD 197 (1410)
Q Consensus 118 d~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~ 197 (1410)
..+.++|.++..-+-+|-=| +|+..+-+.|+.-.--. .-+.+.-|. | ++.++.--.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~--------aVt~S~rvqly~~~~~~------~~k~~srFk--------~--~v~s~~fR~ 78 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDF--------AVTSSVRVQLYSSVTRS------VRKTFSRFK--------D--VVYSVDFRS 78 (487)
T ss_pred ccccCcceeEecCCCCCCce--------EEecccEEEEEecchhh------hhhhHHhhc--------c--ceeEEEeec
Confidence 35678888888766666443 55555556555532110 001111121 2 345555567
Q ss_pred CCCEEEeec-CCCEEEEEEec
Q 000580 198 KGRILLAGR-DGNIYELLYTT 217 (1410)
Q Consensus 198 ~GRIF~gG~-DG~lyEl~Y~~ 217 (1410)
|||.+.+|. .|.|-=+.|..
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred CCeEEEccCCcCcEEEecccc
Confidence 999999998 88777777654
No 99
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.68 E-value=2.5e+02 Score=33.26 Aligned_cols=131 Identities=22% Similarity=0.281 Sum_probs=77.8
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccce---EEEEEeeecCCCCCCCCCcee
Q 000580 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVE---LILVGVCCSGAGDGTDPYAEI 173 (1410)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~---I~Llgv~~~~~~~~~~~~~~l 173 (1410)
..|..-+|||...+.-. ..|.|-+.-|-+|...+-- .-| ||-.| .-|+-+- ...++
T Consensus 206 ~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G-~af----------atGSDD~tcRlyDlR---------aD~~~ 264 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSG-DAF----------ATGSDDATCRLYDLR---------ADQEL 264 (343)
T ss_pred ccccceeeeeccCccee-EeecccccccceEEEccCC-Cee----------eecCCCceeEEEeec---------CCcEE
Confidence 37899999999887554 7899999999999874322 111 22221 2233221 12467
Q ss_pred EEeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccccccccC
Q 000580 174 SLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFG 250 (1410)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~ 250 (1410)
.+|.- +....-|+++.-+..||+.|+|- |. +||.--= +..+. . + .+
T Consensus 265 a~ys~-----~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---------~e~vg-------~---------L-~G 313 (343)
T KOG0286|consen 265 AVYSH-----DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---------GERVG-------V---------L-AG 313 (343)
T ss_pred eeecc-----CcccCCceeEEEcccccEEEeeecCCceeEeeccc---------cceEE-------E---------e-ec
Confidence 76652 23345688998899999999986 65 4443321 11110 0 1 13
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEE
Q 000580 251 AVDPIVELVFDNERQLLYARTEEMKLQVF 279 (1410)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY 279 (1410)
.+.+|.-+-+-+.--.|-|=|=++++++|
T Consensus 314 HeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 314 HENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cCCeeEEEEECCCCcEEEecchhHheeec
Confidence 45556655555555566666666666666
No 100
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=25.10 E-value=59 Score=43.05 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=37.5
Q ss_pred cCCcccccccCCCceEEEEcCCceEEEEEcChHHHHHHHHhcc
Q 000580 525 ARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN 567 (1410)
Q Consensus 525 ~~nela~Q~~~ppr~f~vLTn~Gi~i~~~~RPvDiL~~LL~~~ 567 (1410)
.+++|..|+..||..|++++++|...+..+||++++.--.+.+
T Consensus 476 prt~lfn~t~tPqa~fa~ly~~e~l~Vavlts~~~eiy~yRtp 518 (1263)
T COG5308 476 PRTELFNQTNTPQATFALLYGNEKLFVAVLTSVEKEIYSYRTP 518 (1263)
T ss_pred ccchhccccCCCCceeEEeecCccEEEEEEechhhhhhhhcCc
Confidence 3699999999999999999999999999999999875544443
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.30 E-value=1.3e+03 Score=27.73 Aligned_cols=200 Identities=13% Similarity=0.191 Sum_probs=112.4
Q ss_pred CCCcccccccccCCH-HHHHHHHhcCCccccccccccccceeEEEEeCeEEEEecCCCCCCC----------ccccCCCc
Q 000580 54 WPPLVEVVDTWDLPT-VLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQC----------PEYTGEEQ 122 (1410)
Q Consensus 54 w~p~~~~~~~~~lP~-ei~e~~n~~~~q~~~~mGlFPEI~rAW~tIDn~L~LW~Y~~~~~~~----------~~fd~~~~ 122 (1410)
|-.-. +.|..|. ++...|++. .....|-.-+|-.-.--.+|+.+-+.|.+.+.... ++|-....
T Consensus 33 WDgsl---rlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~ 107 (323)
T KOG1036|consen 33 WDGSL---RLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG 107 (323)
T ss_pred ccCcE---EEEeccchhhhhheecC--CceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCC
Confidence 76553 4455553 566677776 44555554555444446899999999998643211 22222233
Q ss_pred ceEE------EEeeccC--CCccc-ccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeec------CC
Q 000580 123 VICA------VGLAKSK--PGIFV-EAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPS------DG 187 (1410)
Q Consensus 123 ~I~a------V~LvkPK--pgVF~-~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~t------dg 187 (1410)
.|++ |++.-|+ -.++. +..+.+-...+--++.|+|-.- +.+.+|..+.|..+- =.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~----------r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSD----------RKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecC----------ceEEEEEcccccchhhhccccce
Confidence 3333 7776665 22222 2345666666666676666321 355666555444333 12
Q ss_pred eeEEEEEecCCCCEEEeec-CCCEEEEEEecCCccc--cccceeeecc---CccccccccccccccccCCCCceEEEEEe
Q 000580 188 VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWY--KRCRKVCHTA---GVGNVISRWIVPNVFRFGAVDPIVELVFD 261 (1410)
Q Consensus 188 ~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~~Wf--~rc~kinht~---g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD 261 (1410)
..+.||..-++|.=|+.|+ ||.|+ ++|-..+.-- +|=.--||-. +.--. . ||-.|++-
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVa-vE~~d~s~~~~skkyaFkCHr~~~~~~~~~-----y----------PVNai~Fh 241 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVA-VEYFDDSEEAQSKKYAFKCHRLSEKDTEII-----Y----------PVNAIAFH 241 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEE-EEccCCchHHhhhceeEEeeecccCCceEE-----E----------EeceeEec
Confidence 5678898888888888888 99775 3332222110 2222234542 21111 2 23345555
Q ss_pred CCCceEEEEcCCCeEEEEEeCCC
Q 000580 262 NERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 262 ~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
+--+-|||=..+|.|-.||+...
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cccceEEecCCCceEEEccCcch
Confidence 66667888888888888888643
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.69 E-value=7.7e+02 Score=29.53 Aligned_cols=142 Identities=14% Similarity=0.242 Sum_probs=86.8
Q ss_pred EEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccc-eEEEEEeeecCCCCCCCCCceeE
Q 000580 96 ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPV-ELILVGVCCSGAGDGTDPYAEIS 174 (1410)
Q Consensus 96 ~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~-~I~Llgv~~~~~~~~~~~~~~l~ 174 (1410)
-+-|.+|-.||-...... .. -++++.+-+.-+..| ++||||.- .|.++-|.=.. .|..
T Consensus 133 GSWDKTlKfWD~R~~~pv-~t-~~LPeRvYa~Dv~~p-----------m~vVata~r~i~vynL~n~~--------te~k 191 (347)
T KOG0647|consen 133 GSWDKTLKFWDTRSSNPV-AT-LQLPERVYAADVLYP-----------MAVVATAERHIAVYNLENPP--------TEFK 191 (347)
T ss_pred cccccceeecccCCCCee-ee-eeccceeeehhccCc-----------eeEEEecCCcEEEEEcCCCc--------chhh
Confidence 456999999999865554 22 356666655555433 58888754 46665552211 1222
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCCEEEeec-CCCEEEEEEecCC---ccc-cccceeeecc-Cccccccccccccccc
Q 000580 175 LQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGS---GWY-KRCRKVCHTA-GVGNVISRWIVPNVFR 248 (1410)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y~~~~---~Wf-~rc~kinht~-g~~S~~~~~~lPs~~~ 248 (1410)
.. .-|. +-.+.||.+..++.-|+-|+ .|.+ ++.|-... .=| =| ||-+ +. . .+
T Consensus 192 ~~-----~SpL-k~Q~R~va~f~d~~~~alGsiEGrv-~iq~id~~~~~~nFtFk----CHR~~~~--~-----~~---- 249 (347)
T KOG0647|consen 192 RI-----ESPL-KWQTRCVACFQDKDGFALGSIEGRV-AIQYIDDPNPKDNFTFK----CHRSTNS--V-----ND---- 249 (347)
T ss_pred hh-----cCcc-cceeeEEEEEecCCceEeeeecceE-EEEecCCCCccCceeEE----EeccCCC--C-----CC----
Confidence 22 2233 36788999999888888887 8854 67775442 222 23 3432 21 1 11
Q ss_pred cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000580 249 FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1410)
Q Consensus 249 ~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg 282 (1410)
..=.+-.|++-+-.+.|-|-..+|++..||=.
T Consensus 250 --~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 250 --DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred --ceEEecceEeecccceEEEecCCceEEEecch
Confidence 11234456777888999999999999999953
No 103
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=22.31 E-value=1.4e+03 Score=28.21 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCC
Q 000580 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGD 286 (1410)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~g~ 286 (1410)
...+..++||+..+.||.=-|+-=|-.|+..+++.
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~ 241 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG 241 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCC
Confidence 44799999999999999988887777777766553
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.24 E-value=3e+02 Score=33.42 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=36.4
Q ss_pred ccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCC----eeEEEEEecCCCCEEEeec-CCCEEEEEE
Q 000580 149 TPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDG----VTMTCITCTDKGRILLAGR-DGNIYELLY 215 (1410)
Q Consensus 149 T~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg----~~v~~I~gt~~GRIF~gG~-DG~lyEl~Y 215 (1410)
-|+|-.|||.|-++ +.|.||-+. -..|+.. .--+.|.=.+++-+|..|. |-|||-.+-
T Consensus 196 NpvETsILas~~sD--------rsIvLyD~R-~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 196 NPVETSILASCASD--------RSIVLYDLR-QASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred CCCcchheeeeccC--------CceEEEecc-cCCccceeeeeccccceecCccccceeeccccccceehhh
Confidence 45666666665432 356666443 3333333 3345676678999999887 999998773
No 105
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=22.14 E-value=2.5e+02 Score=28.72 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=50.1
Q ss_pred HHHHhhcCCCCCCcHHHHHHHHHhcCCCCCCccchhHhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCCC-----
Q 000580 837 ALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESAD----- 911 (1410)
Q Consensus 837 aLIn~~i~~~g~~svd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~~~~er~~~L~eAL~Lf~kv~~~~~----- 911 (1410)
..|++..+. .+++.|-++|++ .++-..-++.+.|++. +|-. |+=+++++.+... .+
T Consensus 7 ~~I~~~F~~---~s~~eI~~~L~~-------~~~~~a~~~~~~l~~~----SP~S----l~vt~~~l~~~~~-~sl~e~l 67 (118)
T PF13766_consen 7 EAIDRCFSA---DSVEEIIEALEA-------DGDEWAQKTLETLRSG----SPLS----LKVTFEQLRRGRN-LSLAECL 67 (118)
T ss_dssp HHHHHHTTS---SSHHHHHHHHHH-------HS-HHHHHHHHHHCCS-----HHH----HHHHHHHHHCCTT-S-HHHHH
T ss_pred HHHHHHhCC---CCHHHHHHHHHc-------cCcHHHHHHHHHHHHC----CHHH----HHHHHHHHHHhhh-CCHHHHH
Confidence 456777764 489999999999 5667777777777544 3322 4556666666554 33
Q ss_pred ---HHHHHHHHHhcCchHHHHHHH
Q 000580 912 ---LRTVCRRFEDLRFYEAVVRLP 932 (1410)
Q Consensus 912 ---L~~vc~~~~~l~fy~GvVeL~ 932 (1410)
+.-++.-+..-+|++||=-+.
T Consensus 68 ~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 68 RMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHHHhccchHHHHHHHHH
Confidence 444666677788999985433
No 106
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=22.10 E-value=1.5e+02 Score=20.74 Aligned_cols=30 Identities=10% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000580 251 AVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~ 280 (1410)
....|..+.+.+.-+++.+=+.++.|++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788888888778999999999999985
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.43 E-value=4.6e+02 Score=34.77 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=86.8
Q ss_pred eEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCcee
Q 000580 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEI 173 (1410)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l 173 (1410)
|=-+-|..|++||.-...+. ..+.|-++.|+.--.+. .=+.|+-+++...|.+--+.-.. - .+-
T Consensus 123 aSGskDt~IIvwDlV~E~Gl-~rL~GHkd~iT~~~F~~--------~~~~lvS~sKDs~iK~WdL~tqh---C----f~T 186 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGL-FRLRGHKDSITQALFLN--------GDSFLVSVSKDSMIKFWDLETQH---C----FET 186 (888)
T ss_pred eecCCCccEEEEEeccceee-EEeecchHHHhHHhccC--------CCeEEEEeccCceEEEEecccce---e----eeE
Confidence 33457999999999765554 66778788887654433 44455555555556655543210 0 011
Q ss_pred EEeeCCCeEeecCCeeEEEEEecCCCCEEEeecCC--CEEEEEEecCCccccccceeeeccCccccccccccccccccCC
Q 000580 174 SLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGA 251 (1410)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~gG~DG--~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~ 251 (1410)
.+...+ .+-..+-.+ -+.-.+|.|+ .+|||.....+.- |....++ -..-+|.+ ..
T Consensus 187 hvd~r~---------Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~---------~~~~~s~---~~~G~~~r-qs 243 (888)
T KOG0306|consen 187 HVDHRG---------EIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKE---------TNRYIST---KLRGTFIR-QS 243 (888)
T ss_pred Eecccc---------eEEEEEEec-ceEEEEecCCceEEEEeeccccccc---------cccccee---eccceeee-cc
Confidence 111111 011111111 2333444444 8999977655543 1111111 00112222 45
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000580 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1410)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vY~Lg~~ 284 (1410)
+++-++++.|.+-.+||.-..+.+|++|.|-..
T Consensus 244 k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 244 KGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred CCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence 777999999999999999999999999999643
No 108
>TIGR01674 phage_lambda_G phage minor tail protein G. This model describes a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C-terminus of protein G from phage lambda, with about 4 % efficiency, to produce tail assembly protein G-T. The Lys of the Gly-Lys pair is the conserved second-to-last residue of seed alignment for this family.
Probab=21.38 E-value=1.5e+02 Score=31.18 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q 000580 1125 PTLDQRRQYLSNAILQAKNA 1144 (1410)
Q Consensus 1125 i~L~~RIeYLsrAv~~aks~ 1144 (1410)
++==||||||.-....++-.
T Consensus 20 LSALQRieyL~flk~~a~q~ 39 (138)
T TIGR01674 20 LSALQRIEHLEFLKRQTEKV 39 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 45458999998776555443
No 109
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=20.93 E-value=1.5e+03 Score=28.64 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=76.3
Q ss_pred eEEEEEeccc-eEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCC--CEEEeec--CCCEEEEEEe
Q 000580 142 QYLLILATPV-ELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKG--RILLAGR--DGNIYELLYT 216 (1410)
Q Consensus 142 ~~lLvvaT~~-~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~G--RIF~gG~--DG~lyEl~Y~ 216 (1410)
.+.++|++.. ++++|-+..++ .++.+.+.. .+ ++ .-++++.-++| -+|+||+ |+.+|.+...
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~--------~~i~i~~~g--~~-~~--~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~ 288 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDG--------GSISITYLG--TL-CS--IASSLTYLKNGGDYLFVGSEFGDSQLLQISLS 288 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEE--------EEEEEEEEE--E---S---ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred CCEEEEEeCCCeEEEEEEEECC--------CeEEEEEcC--Cc-CC--hhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence 3345555544 88888887753 145555432 21 11 23566667889 9999998 5566666511
Q ss_pred cCCccccccceeeeccCccccccccccccccccCCCCceEEEEEeCC---Cc-------eEEEEcC---CCeEEEEEeCC
Q 000580 217 TGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE---RQ-------LLYARTE---EMKLQVFVLGP 283 (1410)
Q Consensus 217 ~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD~s---R~-------iLYtLs~---~s~I~vY~Lg~ 283 (1410)
. ..+ += .+..-.||++++|=+. .+ -||+.|. +|+|++..=|.
T Consensus 289 ---~--------------l~~-----~~---~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi 343 (504)
T PF10433_consen 289 ---N--------------LEV-----LD---SLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGI 343 (504)
T ss_dssp ---S--------------EEE-----EE---EE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESB
T ss_pred ---C--------------cEE-----EE---eccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccC
Confidence 0 000 10 1234457777777432 22 6777764 55677766442
Q ss_pred CCCCCcceeeeecccccccccccCCccccCcCCCCCCCCCcEEEEEecCccCccceEEEEEecCceEEEEe
Q 000580 284 NGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLS 354 (1410)
Q Consensus 284 ~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~LVAVT~~G~RlYfs 354 (1410)
. + +++ .+ . ......+..|..+....+..-+||.-..+.+|++--
T Consensus 344 ~---~-~~~-~~---------~-------------~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~ 387 (504)
T PF10433_consen 344 G---I-EGL-EL---------A-------------SSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQI 387 (504)
T ss_dssp E---E-E---EE---------E-------------EEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEE
T ss_pred C---c-eee-ee---------e-------------ccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEE
Confidence 1 1 100 00 0 001223777777776554467777777888887765
No 110
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=20.55 E-value=2.3e+02 Score=33.08 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=41.9
Q ss_pred CcceEEEEeeccCCCcccccceEEEEEeccce-EEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEec-C-
Q 000580 121 EQVICAVGLAKSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCT-D- 197 (1410)
Q Consensus 121 ~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~-I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt-~- 197 (1410)
..+|++++-.| ...=-++---+|||+|..- |+||- + ...++.. .+.+|.-=+ +-+..|. +
T Consensus 176 ~t~ITcm~tik--k~~~d~~a~scLViGTE~~~i~iLd----~--------~af~il~--~~~lpsvPv-~i~~~G~~de 238 (257)
T PF14779_consen 176 QTVITCMATIK--KSSADEDAVSCLVIGTESGEIYILD----P--------QAFTILK--QVQLPSVPV-FISVSGQYDE 238 (257)
T ss_pred CceeEEeeeec--ccccCCCCcceEEEEecCCeEEEEC----c--------hhheeEE--EEecCCCce-EEEEEeeeec
Confidence 46788877653 2222333445788898875 44442 1 1122221 133322111 3334453 2
Q ss_pred -CCCEEEeecCCCEEEE
Q 000580 198 -KGRILLAGRDGNIYEL 213 (1410)
Q Consensus 198 -~GRIF~gG~DG~lyEl 213 (1410)
+.|||.+++||+||=|
T Consensus 239 vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 239 VDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEEeCCCEEEEE
Confidence 7999999999999976
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.25 E-value=3.1e+02 Score=32.61 Aligned_cols=73 Identities=15% Similarity=0.289 Sum_probs=56.5
Q ss_pred cCCeeEEEEEecCCCCEEEeecCC---CEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEEEe
Q 000580 185 SDGVTMTCITCTDKGRILLAGRDG---NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFD 261 (1410)
Q Consensus 185 tdg~~v~~I~gt~~GRIF~gG~DG---~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~vD 261 (1410)
.|--.|.+|-.++.|...+.|.|- .||.+. -.+-+.|- .|. -...+.|.|+-.-
T Consensus 214 qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~---------------T~Qcfvsa-----nPd---~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN---------------TYQCFVSA-----NPD---DQHTGAITQVRYS 270 (430)
T ss_pred hccceeeeEeecCCCceEEEecCCCceeEEecc---------------ceeEeeec-----Ccc---cccccceeEEEec
Confidence 355688999999999999999987 455543 22234333 353 2467889999999
Q ss_pred CCCceEEEEcCCCeEEEEE
Q 000580 262 NERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 262 ~sR~iLYtLs~~s~I~vY~ 280 (1410)
++-++--|=|.+|.|++||
T Consensus 271 ~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWD 289 (430)
T ss_pred CCccEEEEeccCCcEEeec
Confidence 9999999999999999998
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.11 E-value=4.6e+02 Score=30.55 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCcceEEEEeeccCCCcccccceEEEEEeccceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCC
Q 000580 120 EEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKG 199 (1410)
Q Consensus 120 ~~~~I~aV~LvkPKpgVF~~~I~~lLvvaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~G 199 (1410)
.+-.|.+..| .||.++|+ |---+..++--.|.. | .|+..|+...+ -.|.|+.-+++|
T Consensus 223 ~P~nV~SASL-~P~k~~fV---------aGged~~~~kfDy~T---g----eEi~~~nkgh~------gpVhcVrFSPdG 279 (334)
T KOG0278|consen 223 MPCNVESASL-HPKKEFFV---------AGGEDFKVYKFDYNT---G----EEIGSYNKGHF------GPVHCVRFSPDG 279 (334)
T ss_pred Cccccccccc-cCCCceEE---------ecCcceEEEEEeccC---C----ceeeecccCCC------CceEEEEECCCC
Confidence 3444444433 56667774 555566666666653 1 46666654323 258899999999
Q ss_pred CEEEeec-CC--CEEEEEEecCC-ccccccceeeecc
Q 000580 200 RILLAGR-DG--NIYELLYTTGS-GWYKRCRKVCHTA 232 (1410)
Q Consensus 200 RIF~gG~-DG--~lyEl~Y~~~~-~Wf~rc~kinht~ 232 (1410)
..+..|+ || .||...=.+-. -| +|.|.-+..
T Consensus 280 E~yAsGSEDGTirlWQt~~~~~~~~~--~~~~~ed~~ 314 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGKTYGLW--KCVKPEDDG 314 (334)
T ss_pred ceeeccCCCceEEEEEecCCCchhhc--cccChhhhc
Confidence 9999997 99 55555443333 34 577777665
No 113
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=20.07 E-value=2.2e+02 Score=38.08 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=47.8
Q ss_pred CeeEEEEEec----CCCC---EEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccccccccCCCCceEEEE
Q 000580 187 GVTMTCITCT----DKGR---ILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELV 259 (1410)
Q Consensus 187 g~~v~~I~gt----~~GR---IF~gG~DG~lyEl~Y~~~~~Wf~rc~kinht~g~~S~~~~~~lPs~~~~~~~d~Ivqi~ 259 (1410)
...++.|+.. .+|. ||+|..+|.|+.+.=-..+.| ..++ +|--+=.|+..++|..|.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~------------~~~~----llEElqvf~~~~pI~~m~ 470 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESG------------KSNV----LLEELQVFPDAEPIRSMQ 470 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccC------------ccce----eEEEEeecCCCCceeEEE
Confidence 3566777655 1222 677777888777763221111 2222 122211235568999999
Q ss_pred EeCCCceEEEEcCCCeEEE
Q 000580 260 FDNERQLLYARTEEMKLQV 278 (1410)
Q Consensus 260 vD~sR~iLYtLs~~s~I~v 278 (1410)
+|.+|+-||.=+..++++|
T Consensus 471 Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 471 LSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred ecccCCeEEEEccCcEEEe
Confidence 9999999999999988776
Done!