Query 000580
Match_columns 1410
No_of_seqs 200 out of 256
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 16:48:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000580.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_352-355//hhsearch_pdb/000580hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i5p_A Nucleoporin NUP170; hel 1.0 1 1 910.1 30.5 460 849-1405 2-481 (525)
2 3i5q_B Nucleoporin NUP170; hel 1.0 1 1 341.1 13.9 193 1159-1405 5-208 (252)
3 3i4r_B Nuclear pore complex pr 1.0 1 1 74.4 11.6 121 1016-1185 379-502 (644)
4 1xks_A Nuclear pore complex pr 1.0 1 1 45.3 17.3 268 61-356 17-309 (450)
5 3kfo_A Nucleoporin NUP133; nuc 1.0 1 1 38.0 7.3 197 1087-1316 3-207 (288)
6 3cqc_B Nuclear pore complex pr 1.0 1 1 37.6 9.8 83 1089-1185 3-85 (227)
7 3dwl_C Actin-related protein 2 1.0 1 1 33.9 10.9 145 98-283 31-177 (377)
8 4fhn_B Nucleoporin NUP120; pro 1.0 1 1 33.2 12.2 133 140-283 127-268 (1139)
9 3iz6_a 40S ribosomal protein R 1.0 1 1 32.3 14.0 165 84-285 71-239 (380)
10 3vu4_A KMHSV2; beta-propeller 1.0 1 1 31.7 21.5 144 99-283 80-227 (355)
No 1
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=910.09 Aligned_cols=460 Identities=19% Similarity=0.283 Sum_probs=404.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHCC
Q ss_conf 868989999872099997865104755999999841399--9699999999999977318999888---99999978467
Q 000580 849 GTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTS--DSEEKENLAREAFNFLSKVPESADL---RTVCRRFEDLR 923 (1410)
Q Consensus 849 ~sVd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~--~~~er~~~L~eAL~Lf~kv~~~~~L---~~vc~~~~~l~ 923 (1410)
+|||.||++||+|||||||+||+++|||+|+|++||+++ |+++|+++|+||++||++++++++| +++|++|.+|+
T Consensus 2 ~sVd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~~~d~~~~~~~L~eAl~Lf~~va~~l~l~~L~~~c~~~~~l~ 81 (525)
T 3i5p_A 2 PSIEYTATALQERCGSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNATALLEQIVDDLSIEKLKEAVSMMLSVN 81 (525)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHC----CHHHHHHHHHHHC----------CHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 86899999999668775887999999999999998756578979999999999999998735389999999999999768
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56999999999887219878766----67766157899999899999999999986321688778899988999999899
Q 000580 924 FYEAVVRLPLQKAQALDPAGDAF----NDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALD 999 (1410)
Q Consensus 924 fy~GvVeL~L~~A~~~Dp~~~al----~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 999 (1410)
||+|||+|||+||+++||+|.|+ +++|.+|+|..+|++|++||++|+++|+++++.+....++ .+++ ...++
T Consensus 82 ~y~GaVeL~L~~A~~~Dp~~~Al~~~~~g~p~~D~~~~~f~~R~~cY~~I~~~L~~ld~~a~~~~~~---~~~~-~~~~~ 157 (525)
T 3i5p_A 82 YYPKSIEFLLNIANSMDKGKLACQYVANGFLENDDRKQYYDKRILVYDLVFDTLIKVDELAEKKQSS---KTQN-QISIS 157 (525)
T ss_dssp CHHHHHHHHHHHHHHHHCSSHHHHHHHHTCSSSSSCHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCC-CCCCC
T ss_conf 7688999999999854972217999867999768789999999999999999999999875045788---7776-42335
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 87887999999998841899137899999999728832212346878389986407996012210013321111248889
Q 000580 1000 PASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTG 1079 (1410)
Q Consensus 1000 ~~~~~~~~~~~~~~al~S~DelFH~~LYdWLi~~~~~d~LLei~sPfLe~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1079 (1410)
+.++.+.++++|+++++|+||+||++||+|||++|++|+||+++|||||+||+|++.
T Consensus 158 ~~~~~~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~----------------------- 214 (525)
T 3i5p_A 158 NDDEVKLRQKSYEAALKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAG----------------------- 214 (525)
T ss_dssp ------CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC-----------------------
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHCCC-----------------------
T ss_conf 036899999999999748768899999999986798222451799517999976185-----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99998513578889999994311999999999985223899899999778999999999993412898875687666654
Q 000580 1080 TPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFD 1159 (1410)
Q Consensus 1080 ~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~akS~~~~~~~~g~~~~~~~ 1159 (1410)
++++++|||||||+||++|++||+||++||++ +|+++|++|||||+||+++|++..+ ++++. ..
T Consensus 215 -----~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s-----~~~i~L~~RIeyLsrA~~~a~~~~~-----~~~~~-~~ 278 (525)
T 3i5p_A 215 -----SSLKISNILWVYYSRRSKFFESAEILYRLATS-----NFDITLFERIEFLSRANGFCNSVSP-----LSQKQ-RI 278 (525)
T ss_dssp --------CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-----SSCCCHHHHHHHHHHHHHHC------------------
T ss_pred -----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHCCC-----CHHHH-HH
T ss_conf -----43167879899999733099999999999727-----8999989999999999998664178-----40478-89
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 01345367699999999999999999881001233554333589999999842023389999999973005888889999
Q 000580 1160 NGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYN 1239 (1410)
Q Consensus 1160 ~~fl~~le~kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L~~~Ll~it~Lyn 1239 (1410)
..++++++||++||+||.+|+++|... .|+. ++++++++++||++|+++|+|||
T Consensus 279 ~~l~~~i~e~ldVA~IQ~~il~~l~~~---------------------~r~~-----~e~~~~ai~~L~~~Ll~is~Lyn 332 (525)
T 3i5p_A 279 VQLASRIQDACEVAGIQGDILSLVYTD---------------------ARID-----SAIKDELIKTLDGKILSTSELFN 332 (525)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHC---------------------SSSC-----HHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCC-----HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 999999999999999999999999743---------------------4668-----58899999984654768999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC----CC-------HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 72033786568887663048888899567999999999999821----79-------79999999975055468998633
Q 000580 1240 EYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSK----GG-------IAEACSVLKRVGSHMYPGDGAVL 1308 (1410)
Q Consensus 1240 dyA~P~~l~E~~L~Il~~a~~~~~~D~~~I~~~W~~ii~~~~~~----~~-------~~e~~~~i~~Lg~~~y~~~~~~F 1308 (1410)
+||+||+||||||+|||||+| +|+.+|+++|++||++++.. ++ ...+++||+.||+++++++ .+|
T Consensus 333 ~yA~p~~l~E~~L~I~~~s~~---~d~~~I~~~W~~li~~~~~e~~~~~~~~~~~~~~~~l~~kv~~lg~~~~~s~-~~F 408 (525)
T 3i5p_A 333 DFAVPLSYHEIALFIFKIADF---RDHEVIMAKWDELFQSLRMEFNNTGKKEDSMNFINLLSNVLIKIGKNVQDSE-FIF 408 (525)
T ss_dssp TTTTTTTCHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-TTC
T ss_pred HHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf 987551579999999987079---9868999999999999998741268876626999999999999988637898-807
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 68879999999999612345566780169999999538990567732129999999999730012203686333332211
Q 000580 1309 PLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSW 1388 (1410)
Q Consensus 1309 Pl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~il~~Y~~L~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 1388 (1410)
|+++|+++||++++++++ ...++.|||+++|+++ |+|++.|+++|++|+.+ +|.++
T Consensus 409 Pl~~lv~~LE~~~~~~~~--~~~~~~~wv~~~~~~~-gv~~~~l~~vy~~l~~~---------------------~~~~~ 464 (525)
T 3i5p_A 409 PIFELFPIVCNFFYETLP--KEHIVSGSIVSIFITA-GVSFNKMYYILKELIET---------------------SDSDN 464 (525)
T ss_dssp CHHHHHHHHHHHHHTTSC--GGGCCTTTTHHHHHHH-TCCHHHHHHHHHHHHHH---------------------CCSCC
T ss_pred CHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHC---------------------CCCHH
T ss_conf 899999999999998512--3689987199999984-99999999999999966---------------------78368
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 01346433659999999
Q 000580 1389 YLESGQCLYLQKEWVQA 1405 (1410)
Q Consensus 1389 ~~~~~~~~~~~~~~~~~ 1405 (1410)
.+.++||+||||+||++
T Consensus 465 ~~~~~~~~~li~~W~~~ 481 (525)
T 3i5p_A 465 SVFNKEMTWLIHEWYKS 481 (525)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999998
No 2
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=341.10 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 40134536769999999999999999988100123355433358999999984202338999999997300588888999
Q 000580 1159 DNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLY 1238 (1410)
Q Consensus 1159 ~~~fl~~le~kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L~~~Ll~it~Ly 1238 (1410)
..+|+++++||+|||+||.+|+++|.+. .|+. ++.+++++++||++|+++|+||
T Consensus 5 ~~~ll~eieE~LDVA~IQ~~IL~~l~~d---------------------~ri~-----~e~~~~~i~~Ln~~Ll~iSeLy 58 (252)
T 3i5q_B 5 IVQLASRIQDACEVAGIQGDILSLVYTD---------------------ARID-----SAIKDELIKTLDGKILSTSELF 58 (252)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHHHHHC---------------------TTSC-----HHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCC-----HHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9999999999999999999999998753---------------------3678-----4779999998577576899999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC---C--------HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9720337865688876630488888995679999999999998217---9--------7999999997505546899863
Q 000580 1239 NEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKG---G--------IAEACSVLKRVGSHMYPGDGAV 1307 (1410)
Q Consensus 1239 ndyA~P~~l~E~~L~Il~~a~~~~~~D~~~I~~~W~~ii~~~~~~~---~--------~~e~~~~i~~Lg~~~y~~~~~~ 1307 (1410)
|+||+||+||||||+|||||+| +|+.+|+++|++||++++.+. + ...+++||+.||+++++++ .+
T Consensus 59 ndyAdP~~l~EicL~I~h~sd~---~d~~~I~~~W~~li~~~~~e~~~~~~~~~~~~~~~~l~~kv~~LG~r~~~se-~~ 134 (252)
T 3i5q_B 59 NDFAVPLSYHEIALFIFKIADF---RDHEVIMAKWDELFQSLRMEFNNTGKKEDSMNFINLLSNVLIKIGKNVQDSE-FI 134 (252)
T ss_dssp HHTTTTTTCHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCT-TT
T ss_pred HHHHHHCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf 9986151568999999587068---9878999999999999997630168865636899999999999988718898-74
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 36887999999999961234556678016999999953899056773212999999999973001220368633333221
Q 000580 1308 LPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCS 1387 (1410)
Q Consensus 1308 FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~il~~Y~~L~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1387 (1410)
||+++|+++||+++++++ +...++.|||+++|+++ |+|++.++++|++|+.+ +|++
T Consensus 135 FPl~~Lv~~Le~~~~e~~--~~~~~~~gwv~~~fl~~-gV~~~~L~~vl~~L~~~---------------------~g~~ 190 (252)
T 3i5q_B 135 FPIFELFPIVCNFFYETL--PKEHIVSGSIVSIFITA-GVSFNKMYYILKELIET---------------------SDSD 190 (252)
T ss_dssp SCHHHHHHHHHHHHHHHS--CGGGCCTTTTHHHHHHH-TCCHHHHHHHHHHHHHT---------------------CSSC
T ss_pred CCHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHC-CCCHHHHHHHHHHHHHC---------------------CCCH
T ss_conf 359999999999999861--03689988099999984-99999999999999976---------------------8935
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 101346433659999999
Q 000580 1388 WYLESGQCLYLQKEWVQA 1405 (1410)
Q Consensus 1388 ~~~~~~~~~~~~~~~~~~ 1405 (1410)
+.+..+||+||||+||++
T Consensus 191 ~~~~~~ei~~li~~W~~~ 208 (252)
T 3i5q_B 191 NSVFNKEMTWLIHEWYKS 208 (252)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999998
No 3
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=1.00 E-value=1 Score=74.43 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 18991378999999997288322123468---783899864079960122100133211112488899999851357888
Q 000580 1016 QSPDRIFHEYLYRTMIDLGLENELLEYGG---PDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDL 1092 (1410)
Q Consensus 1016 ~S~DelFH~~LYdWLi~~~~~d~LLei~s---PfLe~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DL 1092 (1410)
...|+-|-..+|+|+|++|...+||+... ++|..||+.. .+|
T Consensus 379 kfg~~~FA~~lf~~yi~~g~~~~LL~~~~~~~~~L~~FL~~~-----------------------------------p~L 423 (644)
T 3i4r_B 379 QFADQNFSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQAH-----------------------------------EHL 423 (644)
T ss_dssp HSCSSCHHHHTHHHHCC-------------CGGGTHHHHHTC-----------------------------------SSS
T ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCC-----------------------------------CCC
T ss_conf 727677589999999977976688608622149999998339-----------------------------------986
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999943119999999999852238998999997789999999999934128988756876666540134536769999
Q 000580 1093 LARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAV 1172 (1410)
Q Consensus 1093 LWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~akS~~~~~~~~g~~~~~~~~~fl~~le~kleV 1172 (1410)
.|-.....++|..||+.|..||.+.. -.+.+|--.||.|.+++=.++. ..+...+-+..++..+++
T Consensus 424 sWI~di~~~~y~~Aa~tL~~lA~~E~------~~~~kkk~~LSLaKLa~LAs~~--------~~~~~~~~l~~i~~~L~l 489 (644)
T 3i4r_B 424 SWLHEINSQELEKAHATLLGLANMET------RYFAKKKTLLGLSKLAALASDF--------SEDMLQEKIEEMAEQERF 489 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC------SCHHHHHHHHHHHHHHHHHSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHH
T ss_conf 38999986779999999999986100------6899999998899999986489--------851078999999987699
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 000580 1173 LRFQTKIKDELEA 1185 (1410)
Q Consensus 1173 aqiQ~~I~~~l~~ 1185 (1410)
..+|..|.+.+..
T Consensus 490 i~~Qe~L~~~l~~ 502 (644)
T 3i4r_B 490 LLHQETLPEQLLA 502 (644)
T ss_dssp HHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 4
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=1.00 E-value=1 Score=45.35 Aligned_cols=268 Identities=15% Similarity=0.116 Sum_probs=112.7
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 4443--69989999998117864443346313462689980919999638999988633598862679995135788642
Q 000580 61 VDTW--DLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFV 138 (1410)
Q Consensus 61 ~~~~--~lP~~i~e~~n~~~~q~~~~mGlFpEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPkpgVF~ 138 (1410)
.+.+ .||..+.|..+...... ...|-+.+-+.||+.-.+++|+|+|...... +- .++.. |--|..+...
T Consensus 17 V~~~~~~LP~~v~eal~~~~~~~-~~sg~i~~~GyAlvv~~~~l~VW~y~~~~~~---~~----~~c~~-lpLp~sd~~~ 87 (450)
T 1xks_A 17 VKTFGSSLPVKVMEALTLAEVDD-QLTINIDEGGWACLVCKEKLIIWKIALSPIT---KL----SVCKE-LQLPPSDFHW 87 (450)
T ss_dssp EEECSSCCCHHHHHHHHHCCTTS-CEEEEECTTSEEEEEETTEEEEEECCSSCCG---GG----CCEEE-EECCCCSSCC
T ss_pred EEECCCCCCHHHHHHHHCCCCCC-CEEEEECCCCEEEEEECCEEEEEEECCCCCC---CC----CCCEE-CCCCCCCCCC
T ss_conf 85478758777998750567775-2699998984799982896999860488777---76----53246-1588434566
Q ss_pred CCCEE-EEEEECC------CEEEEEEEEEC------CCCCCCCCCCEEEEEECC-CEEEECCCE-EEEEEEECCCCCEEE
Q ss_conf 36238-9997412------24899986515------999999998616884079-838625992-599998659997898
Q 000580 139 EAIQY-LLILATP------VELILVGVCCS------GAGDGTDPYAEISLQPLP-EYTVPSDGV-TMTCITCTDKGRILL 203 (1410)
Q Consensus 139 ~~I~~-lLviaT~------~~I~Llgv~~~------~~~~~~~~~~~l~L~~~~-~~sv~tdg~-~v~~I~gt~~GRIF~ 203 (1410)
..--. ++.=++. .+-=++.|+-+ ++-...+++-|+.+.-.+ .+.....++ .-..|++|.+||+|+
T Consensus 88 ~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~ 167 (450)
T 1xks_A 88 SADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIR 167 (450)
T ss_dssp CGGGEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 78679998488765454678856999907960898600378873399875379970699976128855999925550999
Q ss_pred EECCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 215998889998417764333112530257653321334453223---48888669999847976699980897199999
Q 000580 204 AGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFR---FGAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1410)
Q Consensus 204 ~G~DG~iyEl~Y~~~~~Wf~rc~kinht~~~~S~~~~~~lPs~~~---~~~~d~I~qi~vD~sR~iLYtLs~~s~I~vy~ 280 (1410)
---+|. +.|. |+.+..++|+.+-|.+ .++|+|. ....-..+.+.-+.....+|+|++++ |+.|+
T Consensus 168 lsirGk-p~l~----------~~~l~~~~G~l~gi~~-~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~-lq~W~ 234 (450)
T 1xks_A 168 LIPESS-GKIH----------QHILPQGQGMLSGIGR-KVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSN-ISKWE 234 (450)
T ss_dssp EEECTT-SCEE----------EEECTTCCCC-------------------CCCCEEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred EEECCC-CEEE----------EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCC-EEEEE
T ss_conf 985697-5079----------9995689740002330-000002566777635899740578967999984886-37899
Q ss_pred ECCCCCCCCCEEEEEC--CCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECC--CEEEEEEC
Q ss_conf 0789999751011001--2244211124-78655576788999999489997557668653599999558--30899822
Q 000580 281 LGPNGDGPLKKVAEER--NLFNQRDTHH-GGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD--GRRMYLST 355 (1410)
Q Consensus 281 Lg~~g~~~~~kv~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVAVT~~--G~RLYfs~ 355 (1410)
+ .+|.+ +++.+.. ..+..+-... .+....... ......+++..+++.. +...+-|++++.. -.+.||-.
T Consensus 235 l-~~~~e--~~~~~~di~~~i~~~l~~~~w~~~~~~e~-~~~~~~~~~LD~~~~~--~~~~iLl~a~~~~~~~~~~y~~l 308 (450)
T 1xks_A 235 L-DDSSE--KHAYSWDINRALKENITDAIWGSESNYEA-IKEGVNIRYLDLKQNC--DGLVILAAAWHSADNPCLIYYSL 308 (450)
T ss_dssp E-CSSCE--EEEEEEEHHHHHHHHHHHHHHTTSTTHHH-HHTTCEEEEEEEEEET--TEEEEEEEEECTTSSSCBEEEEE
T ss_pred E-CCCCC--EEEEEECHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEEEEEECC--CCEEEEEEEECCCCCCCEEEEEE
T ss_conf 3-69983--49996158999999998750344444345-7655527999843848--97099999953788861489999
Q ss_pred C
Q ss_conf 7
Q 000580 356 S 356 (1410)
Q Consensus 356 ~ 356 (1410)
.
T Consensus 309 ~ 309 (450)
T 1xks_A 309 I 309 (450)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 5
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=37.97 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 35788899999943119999999999852238998999997789999999999934128988756876666540134536
Q 000580 1087 AKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLL 1166 (1410)
Q Consensus 1087 ~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~akS~~~~~~~~g~~~~~~~~~fl~~l 1166 (1410)
.+|..+-|-.+.-.++|..||+.|..||...+ ..+-.|.+|-=.||.|.+++=+... +..+.+-+..+
T Consensus 3 p~YaklSWI~dI~~~dY~~AA~tL~~lA~~~~---~~e~~l~~kkv~LSLAKLs~LA~~e---------~~~~~~~L~~I 70 (288)
T 3kfo_A 3 LKYGHVAWIQQILDGSYADAMNTLKNITVDDS---KKGESLSECELHLNVAKLSSLLVEK---------DNLDINTLRKI 70 (288)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHCC---------CCCCHHHHHHH
T ss_conf 65442349999860549999999999872025---4322367789997599999987066---------74318999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHC--
Q ss_conf 76999999999999999998810012335543335899999998420233899999-999730058888899997203--
Q 000580 1167 EGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVRE-KAKELSLDLKSITQLYNEYAV-- 1243 (1410)
Q Consensus 1167 e~kleVaqiQ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~i~~L~~~Ll~it~LyndyA~-- 1243 (1410)
+..|++.++|..+.+.+... . ...+ .+- .+..+.+-.++ .-+-++.+-+++.+|-+-|.-
T Consensus 71 ~~eLdlI~~Q~~L~~~i~~~--~-------------~~~~-k~~-~~~al~~lf~~~~~kL~~~~~L~~~eLIDLLTLid 133 (288)
T 3kfo_A 71 QYNLDTIDAEKNISNKLKKG--E-------------VQIC-KRF-KNGSIREVFNILVEELKSTTVVNLSDLVELYSMLD 133 (288)
T ss_dssp CCCHHHHHHHHHHHHHHHHT--C-------------SCBC-GGG-SSHHHHHHHHHHHHHHHSSSCCCHHHHHHHHTTBC
T ss_pred HHCCHHHHHHHHHHHHHHHH--H-------------HHHH-HHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 86008979999999999986--6-------------6888-776-05999999999999997787278999999998058
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHH
Q ss_conf 37865688876630488888995----67999999999999821797999999997-505546899863368879999
Q 000580 1244 PFELWEICLEMLYFANYTGDADS----SIIRETWARLIDQALSKGGIAEACSVLKR-VGSHMYPGDGAVLPLDTLCLH 1316 (1410)
Q Consensus 1244 P~~l~E~~L~Il~~a~~~~~~D~----~~I~~~W~~ii~~~~~~~~~~e~~~~i~~-Lg~~~y~~~~~~FPl~~lv~~ 1316 (1410)
+-.-+-..|..+..+++. -++ .+.+.+|.+++-+.-..-+.......+.. +-.++|.+. -|||..+-.+
T Consensus 134 ~~~~F~~ALkvL~~~~~~--~~~e~~~~l~~lIWRRcilrDd~~~~~TaLy~tL~~~~~~~l~~~~--~~~lp~~~~l 207 (288)
T 3kfo_A 134 DEESLFIPLRLLSVDGNL--LNFEVKKFLNALVWRRIVLLNASNEGDKLLQHIVKRVFDEELPKNN--DFPLPSVDLL 207 (288)
T ss_dssp SHHHHHHHHHHHHHHGGG--SCHHHHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHTTHHHHS--CEECCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHH
T ss_conf 706799999999846444--9979999999999999996267741220999999999974620168--8789725777
No 6
>3cqc_B Nuclear pore complex protein NUP133; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3cqg_B
Probab=1.00 E-value=1 Score=37.55 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 78889999994311999999999985223899899999778999999999993412898875687666654013453676
Q 000580 1089 YFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEG 1168 (1410)
Q Consensus 1089 ~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i~L~~RIeYLsrAv~~akS~~~~~~~~g~~~~~~~~~fl~~le~ 1168 (1410)
+.+|.|-.+...++|..||+.|..||.+.+ -.+.+|--.||.|.+++=+... ..+...+-+..++.
T Consensus 3 ~~~LsWI~di~~~dy~~Aa~tL~~LA~~e~------~~l~~kk~~LSLAKLa~LA~~~--------~~~~~~~~l~~i~~ 68 (227)
T 3cqc_B 3 SHMLSWLHEINSQELEKAHATLLGLANMET------RYFAKKKTLLGLSKLAALASDF--------SEDMLQEKIEEMAE 68 (227)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHHHHHHHCC------SCHHHHHHHHHHHHHHHHHSCC--------CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHH
T ss_conf 883239999987619999999999986011------5799999998899999985557--------76118999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q 000580 1169 KLAVLRFQTKIKDELEA 1185 (1410)
Q Consensus 1169 kleVaqiQ~~I~~~l~~ 1185 (1410)
.+++..+|..|.+.+..
T Consensus 69 ~L~li~iQe~L~~~~l~ 85 (227)
T 3cqc_B 69 QERFLLHQETLPEQLLA 85 (227)
T ss_dssp HHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88899999999999999
No 7
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=33.86 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=73.2
Q ss_pred EECEEEEEECCCCC-CCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 80919999638999-98863359886267999513578864236238999741224899986515999999998616884
Q 000580 98 VDNSLFLWRFDKWD-GQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1410)
Q Consensus 98 IDn~L~LW~Y~~~~-~~~~~fd~~~~~I~aV~LvkPkpgVF~~~I~~lLviaT~~~I~Llgv~~~~~~~~~~~~~~l~L~ 176 (1410)
-|+.+.+||...+. .....+.+-...|.++..-. . =++++..+..-.|.+.-+.-.. .+.
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~-------~~~l~s~s~d~~v~vwd~~~~~-----------~~~ 91 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-K-------SNRIVTCSQDRNAYVYEKRPDG-----------TWK 91 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-T-------TCCEEEEETTSSEEEC-----------------CCC
T ss_pred CCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEC-C-------CCEEEEEECCCEEEEEECCCCC-----------CEE
T ss_conf 99979999836996489899806896299999928-9-------9989999089829999727777-----------231
Q ss_pred ECCCEEEECCCEEEEEEEECCCCCEEEEEC-CCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 079838625992599998659997898215-9988899984177643331125302576533213344532234888866
Q 000580 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPI 255 (1410)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gt~~GRIF~~G~-DG~iyEl~Y~~~~~Wf~rc~kinht~~~~S~~~~~~lPs~~~~~~~d~I 255 (1410)
+........-.++++.-.++|+.|+.|. ||.|+-........|. +...+.......|
T Consensus 92 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------------~~~~~~~~h~~~v 149 (377)
T 3dwl_C 92 --QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW--------------------VSKHLKRPLRSTI 149 (377)
T ss_dssp --CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC--------------------CCEEECSSCCSCE
T ss_pred --EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCE--------------------EEEEEECCCCCCE
T ss_conf --235750568856799989989989998069719999977866432--------------------5467624668973
Q ss_pred EEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf 9999847976699980897199999078
Q 000580 256 VELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 256 ~qi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1410)
..+++.+..++|++-+.+++|++|++..
T Consensus 150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 150 LSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp EEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEEEE
T ss_conf 8999869997799980798799999886
No 8
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=1.00 E-value=1 Score=33.25 Aligned_cols=133 Identities=10% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCEEEEEEECCCEEEEEEEEEC----CCCC-CCCCCCEEEEEECCCEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEE
Q ss_conf 6238999741224899986515----9999-9999861688407983862599259999865999789821599888999
Q 000580 140 AIQYLLILATPVELILVGVCCS----GAGD-GTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELL 214 (1410)
Q Consensus 140 ~I~~lLviaT~~~I~Llgv~~~----~~~~-~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~~GRIF~~G~DG~iyEl~ 214 (1410)
+.=++.||.+...++-+-+-.+ .... ..+. ...+.-..|++.. ...+++-+...+|.+-+||.|--|.
T Consensus 127 ~~L~v~vit~~~~ly~l~l~~~~f~~~~~~~~~~W---~k~~~P~~f~~r~----Ph~L~avs~~~lvVsL~DGgLLrL~ 199 (1139)
T 4fhn_B 127 DTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDW---CLCYRPISFLNQK----PDLMAAISTSEICVSFFNGGLTKII 199 (1139)
T ss_dssp SEEEEEEECSSSCEEEEEEEHHHHHCCCCCCCSCC---BCCBCCSCTTTSC----EEEEEECCSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECHHHHCCCCCCCCCCC---CEECCCCCCCCCC----CEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 86999998578968999957899307667677351---5113687756788----6499997688289997889879998
Q ss_pred EECCCC-CCCCCCEEEECCCCCCCCCCCCCCCC-C--CCCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf 841776-43331125302576533213344532-2--348888669999847976699980897199999078
Q 000580 215 YTTGSG-WYKRCRKVCHTAGVGNVISRWIVPNV-F--RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1410)
Q Consensus 215 Y~~~~~-Wf~rc~kinht~~~~S~~~~~~lPs~-~--~~~~~d~I~qi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1410)
-+..++ |- ....|..+.+.|+ +.++|.. . .......|+.++.-+...+|+||+.+.++++|++..
T Consensus 200 r~~~d~~~~--~~~f~~~s~l~sL--~~l~~~~~~~~~~~~~~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t 268 (1139)
T 4fhn_B 200 LNPKDASHY--EQHIDDSSYLFSL--KKYLSLQAFKADYRSPNTIISMIFLSTYNVLVMLSLDYKLKVLDLST 268 (1139)
T ss_dssp EETTEEEEE--EEC-----------------------CCCCTTCBSCCEEETTTTEEEEEBTTCEEEEEETTT
T ss_pred ECCCCCCCC--EEEECCCCHHHHH--HHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC
T ss_conf 557898774--2433388377645--42266566775678865168752257763799996798798888799
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=32.25 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCCCCCCC-EEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECC
Q ss_conf 334631346-2689980919999638999988633598862679995135788642362389997412248999865159
Q 000580 84 LCGIFPEIR-RAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSG 162 (1410)
Q Consensus 84 ~mGlFpEI~-rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPkpgVF~~~I~~lLviaT~~~I~Llgv~~~~ 162 (1410)
.+-+-|.=+ -+=.+-|..+.+||...+... ..+.+-...|.+|+. -++=+++........|.+.-+.-..
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~h~~~v~~~~~--------s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAF--------APNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEE-EEEECCCTTCCCCEE--------CTTSSEEEECCSSSCCEEEECCCCS
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCCC-EEEECCCCCEEEEEE--------CCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 9999689998999918980999878888601-488559987899999--------8999989995479858999897775
Q ss_pred CCCCCCCCCEEEEEECCCEEEECCCEEEEEEEECC-CC-CEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 99999998616884079838625992599998659-99-78982159988899984177643331125302576533213
Q 000580 163 AGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTD-KG-RILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISR 240 (1410)
Q Consensus 163 ~~~~~~~~~~l~L~~~~~~sv~tdg~~v~~I~gt~-~G-RIF~~G~DG~iyEl~Y~~~~~Wf~rc~kinht~~~~S~~~~ 240 (1410)
..++. +.+.. .+. -+.-.+.++.-.+ .+ +++-|+.||.|.-.... .+ +|-+ .
T Consensus 142 ~~~~~-----~~~~~--~~~--gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~--~~---~~~~---------~--- 195 (380)
T 3iz6_a 142 DRDGN-----MPVSR--VLT--GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT--TG---QRIS---------I--- 195 (380)
T ss_dssp SCCCS-----STTCC--BCC--CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT--TC---CEEE---------E---
T ss_pred CCCCC-----CCCEE--ECC--CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECC--CC---CEEE---------E---
T ss_conf 55677-----33126--406--8975468999964899789997799819999867--79---5789---------9---
Q ss_pred CCCCCCCCCCCCCCEEEEEEEC-CCCEEEEECCCCEEEEEEECCCC
Q ss_conf 3445322348888669999847-97669998089719999907899
Q 000580 241 WIVPNVFRFGAVDPIVELVFDN-ERQLLYARTEEMKLQVFVLGPNG 285 (1410)
Q Consensus 241 ~~lPs~~~~~~~d~I~qi~vD~-sR~iLYtLs~~s~I~vy~Lg~~g 285 (1410)
+...+.......|..+.+.. ..++|++=+.+++|++||+...+
T Consensus 196 --~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 196 --FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp --ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred --EECCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf --60566788756769999206999989999789869999788897
No 10
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=1.00 E-value=1 Score=31.73 Aligned_cols=144 Identities=9% Similarity=0.075 Sum_probs=76.7
Q ss_pred ECEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 09199996389999886335988626799951357886423623899974122489998651599999999861688407
Q 000580 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1410)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LvkPkpgVF~~~I~~lLviaT~~~I~Llgv~~~~~~~~~~~~~~l~L~~~ 178 (1410)
|+.+.+||...+... ..+. ....|.+|.+-+ ..+++++...|.++-+.-.. +.+.-
T Consensus 80 d~~v~iWd~~~~~~~-~~~~-~~~~v~~v~~~~-----------~~~~~~~~~~i~i~d~~~~~--------~~~~~--- 135 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDV-SRIK-VDAPVKDLFLSR-----------EFIVVSYGDVISVFKFGNPW--------KRITD--- 135 (355)
T ss_dssp TTEEEEEETTTTEEE-EEEE-CSSCEEEEEECS-----------SEEEEEETTEEEEEESSTTC--------CBSSC---
T ss_pred CCEEEEEECCCCCEE-EEEE-CCCCEEEEEECC-----------CEEEEEECCEEEEEECCCCC--------EEEEE---
T ss_conf 668999999999599-9998-788467899749-----------87999993989999888773--------04577---
Q ss_pred CCEEEECCCEEEEEEEECCCCCEEEE--ECCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCE
Q ss_conf 98386259925999986599978982--1599888999841776433311253025765332133445-32234888866
Q 000580 179 PEYTVPSDGVTMTCITCTDKGRILLA--GRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVP-NVFRFGAVDPI 255 (1410)
Q Consensus 179 ~~~sv~tdg~~v~~I~gt~~GRIF~~--G~DG~iyEl~Y~~~~~Wf~rc~kinht~~~~S~~~~~~lP-s~~~~~~~d~I 255 (1410)
+..+ ..+.++. . +.+.++ +.||.|+-........+...-.+. ..... .| ........++|
T Consensus 136 --~~~~---~~~~~~s--~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~----~~~~~-----~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 136 --DIRF---GGVCEFS--N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV----QQKAI-----LGKGVLIKAHTNPI 198 (355)
T ss_dssp --CEEE---EEEEEEE--T-TEEEEEESSCTTCEEEEECCC---------------------------CCEEECCCSSCE
T ss_pred --ECCC---CCEEEEE--C-CEEEEECCCCCCEEEEEECCCCCCCCCCCCCC----CCCCC-----CCCCEEEECCCCCE
T ss_conf --6168---9469998--0-68999688868689999887887653233554----43434-----76117997667845
Q ss_pred EEEEEECCCCEEEEECCCCE-EEEEEECC
Q ss_conf 99998479766999808971-99999078
Q 000580 256 VELVFDNERQLLYARTEEMK-LQVFVLGP 283 (1410)
Q Consensus 256 ~qi~vD~sR~iLYtLs~~s~-I~vy~Lg~ 283 (1410)
..+++.+.-++|.+=+.+++ |++||+..
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf 89999999999999958998999999899
Done!