Query 000581
Match_columns 1408
No_of_seqs 340 out of 1412
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 20:08:13 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 2E-163 5E-168 1571.6 74.2 1206 5-1398 1510-2741(2806)
2 KOG0890 Protein kinase of the 100.0 3E-143 6E-148 1382.4 79.8 1154 11-1380 1080-2317(2382)
3 KOG0891 DNA-dependent protein 100.0 1.4E-92 3.1E-97 943.1 46.8 1010 183-1388 1129-2245(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 1.2E-69 2.7E-74 744.8 57.3 1016 183-1382 921-2043(2105)
5 cd05171 PIKKc_ATM Ataxia telan 100.0 1.8E-69 3.9E-74 618.0 26.1 274 1103-1380 1-279 (279)
6 cd05170 PIKKc_SMG1 Suppressor 100.0 6.9E-68 1.5E-72 611.6 25.1 276 1103-1379 1-306 (307)
7 cd05163 TRRAP TRansformation/t 100.0 4.3E-67 9.4E-72 588.6 23.2 247 1103-1379 1-252 (253)
8 cd05169 PIKKc_TOR TOR (Target 100.0 4.4E-67 9.5E-72 601.2 23.6 276 1103-1380 1-280 (280)
9 cd05172 PIKKc_DNA-PK DNA-depen 100.0 6.1E-65 1.3E-69 565.2 23.4 233 1103-1379 1-234 (235)
10 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.3E-63 2.8E-68 555.8 23.2 236 1103-1379 1-236 (237)
11 KOG0889 Histone acetyltransfer 100.0 2.7E-58 6E-63 608.3 61.8 904 331-1381 2414-3483(3550)
12 cd05164 PIKKc Phosphoinositide 100.0 5.9E-60 1.3E-64 522.0 22.7 222 1103-1373 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 3.7E-55 8E-60 484.8 22.5 219 1103-1373 1-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 1.4E-54 3E-59 505.5 27.6 269 1083-1400 47-322 (352)
15 cd05166 PI3Kc_II Phosphoinosit 100.0 2.2E-53 4.8E-58 494.1 27.2 268 1084-1401 48-324 (353)
16 cd00896 PI3Kc_III Phosphoinosi 100.0 2.2E-53 4.7E-58 494.4 26.7 259 1083-1401 51-319 (350)
17 cd05177 PI3Kc_C2_gamma Phospho 100.0 1.9E-52 4.2E-57 483.3 26.3 267 1084-1400 49-324 (354)
18 cd05165 PI3Kc_I Phosphoinositi 100.0 2.6E-52 5.7E-57 484.1 26.4 269 1084-1400 53-335 (366)
19 cd05168 PI4Kc_III_beta Phospho 100.0 2.3E-52 5E-57 474.2 20.2 240 1116-1400 15-260 (293)
20 smart00146 PI3Kc Phosphoinosit 100.0 4.6E-52 9.9E-57 454.8 18.8 200 1133-1382 1-201 (202)
21 cd05174 PI3Kc_IA_delta Phospho 100.0 1.1E-50 2.4E-55 468.1 23.6 270 1085-1401 53-331 (361)
22 cd05173 PI3Kc_IA_beta Phosphoi 100.0 4.2E-50 9.2E-55 465.1 25.7 269 1085-1401 53-331 (362)
23 cd00893 PI4Kc_III Phosphoinosi 100.0 1.2E-50 2.6E-55 459.3 19.8 241 1111-1401 9-257 (289)
24 cd00894 PI3Kc_IB_gamma Phospho 100.0 5.1E-50 1.1E-54 463.2 24.9 270 1083-1401 53-335 (365)
25 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.3E-49 2.8E-54 457.2 27.4 268 1083-1400 47-323 (353)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 9.1E-50 2E-54 448.6 15.5 229 1131-1379 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 2.7E-48 5.9E-53 443.0 24.0 244 1107-1400 15-278 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1.8E-46 3.9E-51 431.4 27.2 267 1084-1400 49-324 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 9.2E-46 2E-50 425.7 25.6 268 1084-1400 52-335 (366)
30 KOG0906 Phosphatidylinositol 3 100.0 2.1E-37 4.7E-42 360.4 28.8 433 895-1401 308-811 (843)
31 KOG0905 Phosphoinositide 3-kin 100.0 1.3E-36 2.8E-41 369.6 29.4 435 896-1398 858-1315(1639)
32 KOG0904 Phosphatidylinositol 3 100.0 1.5E-34 3.2E-39 346.0 31.7 434 895-1400 578-1046(1076)
33 PF02259 FAT: FAT domain; Int 100.0 4.1E-34 8.9E-39 339.6 30.5 317 509-921 1-352 (352)
34 KOG0902 Phosphatidylinositol 4 100.0 1.8E-28 3.8E-33 305.0 27.5 436 896-1401 1284-1770(1803)
35 KOG0903 Phosphatidylinositol 4 100.0 4.6E-28 9.9E-33 288.7 18.8 225 1128-1400 584-814 (847)
36 PTZ00303 phosphatidylinositol 99.9 1.9E-25 4.2E-30 262.3 12.2 164 1117-1338 1026-1200(1374)
37 KOG0892 Protein kinase ATM/Tel 98.8 4E-08 8.7E-13 132.7 13.6 249 1103-1380 2164-2415(2806)
38 TIGR02917 PEP_TPR_lipo putativ 96.4 0.6 1.3E-05 62.1 27.1 60 682-749 839-898 (899)
39 PLN03218 maturation of RBCL 1; 93.5 17 0.00038 50.1 27.4 85 380-493 472-566 (1060)
40 TIGR02917 PEP_TPR_lipo putativ 93.5 36 0.00079 45.2 39.5 67 679-753 668-734 (899)
41 smart00145 PI3Ka Phosphoinosit 92.1 0.61 1.3E-05 50.8 8.8 96 895-996 43-153 (184)
42 PLN03081 pentatricopeptide (PP 92.0 20 0.00043 47.4 24.6 290 381-751 260-557 (697)
43 PRK15174 Vi polysaccharide exp 91.6 30 0.00065 45.5 25.3 67 679-753 283-349 (656)
44 PRK11447 cellulose synthase su 91.3 57 0.0012 46.0 28.9 84 679-770 636-722 (1157)
45 PLN03218 maturation of RBCL 1; 91.1 20 0.00043 49.5 23.4 299 334-709 474-783 (1060)
46 cd00872 PI3Ka_I Phosphoinositi 90.6 0.46 1E-05 51.1 6.0 88 895-988 38-137 (171)
47 cd00870 PI3Ka_III Phosphoinosi 89.7 0.74 1.6E-05 49.4 6.6 94 895-988 45-151 (166)
48 PRK10747 putative protoheme IX 89.1 45 0.00097 41.0 22.5 58 681-747 329-386 (398)
49 cd00864 PI3Ka Phosphoinositide 88.9 1.2 2.5E-05 47.2 7.3 87 896-988 39-137 (152)
50 PRK15174 Vi polysaccharide exp 87.9 1E+02 0.0023 40.5 26.7 65 681-753 319-383 (656)
51 PLN03081 pentatricopeptide (PP 87.9 27 0.00059 46.2 20.8 285 335-709 262-557 (697)
52 PLN03077 Protein ECB2; Provisi 83.4 1.8E+02 0.0038 39.6 25.7 53 381-433 425-483 (857)
53 PF00613 PI3Ka: Phosphoinositi 83.1 1.9 4.2E-05 47.1 5.5 96 895-996 44-154 (184)
54 PF13575 DUF4135: Domain of un 82.3 7.1 0.00015 47.5 10.6 112 1126-1314 67-178 (370)
55 TIGR02906 spore_CotS spore coa 80.0 30 0.00064 40.5 14.6 31 1279-1311 184-214 (313)
56 cd00869 PI3Ka_II Phosphoinosit 79.2 4.8 0.0001 43.3 6.7 94 895-995 38-147 (169)
57 PRK11788 tetratricopeptide rep 76.7 1.8E+02 0.0038 35.0 28.9 94 683-788 252-348 (389)
58 PF14559 TPR_19: Tetratricopep 74.3 7.1 0.00015 34.4 5.5 56 691-754 2-57 (68)
59 PF13432 TPR_16: Tetratricopep 73.5 17 0.00037 31.8 7.7 61 685-753 2-62 (65)
60 TIGR00990 3a0801s09 mitochondr 73.2 1.8E+02 0.0039 37.9 20.3 51 691-749 519-569 (615)
61 cd05145 RIO1_like RIO kinase f 73.1 3.9 8.4E-05 44.6 4.2 48 1287-1358 142-189 (190)
62 PLN03077 Protein ECB2; Provisi 73.0 3.5E+02 0.0077 36.8 34.1 154 380-571 323-482 (857)
63 PF01636 APH: Phosphotransfera 70.6 65 0.0014 35.3 13.5 33 1279-1311 163-195 (239)
64 cd05147 RIO1_euk RIO kinase fa 66.6 5.8 0.00013 43.4 3.9 48 1287-1358 142-189 (190)
65 TIGR02172 Fb_sc_TIGR02172 Fibr 64.2 37 0.0008 38.3 9.8 24 1286-1311 157-180 (226)
66 PF12688 TPR_5: Tetratrico pep 61.3 21 0.00044 36.3 6.3 85 412-523 8-92 (120)
67 PF13371 TPR_9: Tetratricopept 60.9 39 0.00085 30.1 7.6 60 688-755 3-62 (73)
68 PF13176 TPR_7: Tetratricopept 57.6 14 0.00031 28.8 3.5 24 410-433 4-27 (36)
69 PRK10370 formate-dependent nit 57.1 1.2E+02 0.0025 33.5 12.0 70 677-754 70-142 (198)
70 TIGR02521 type_IV_pilW type IV 54.9 1.5E+02 0.0032 31.8 12.5 86 335-434 34-128 (234)
71 TIGR02795 tol_pal_ybgF tol-pal 54.6 1.2E+02 0.0027 29.1 10.7 84 682-770 4-87 (119)
72 PF13429 TPR_15: Tetratricopep 54.6 17 0.00037 42.0 5.1 86 334-435 80-176 (280)
73 PF13414 TPR_11: TPR repeat; P 53.3 63 0.0014 28.4 7.5 63 680-750 3-66 (69)
74 cd05151 ChoK Choline Kinase (C 53.1 10 0.00022 39.8 2.8 29 1281-1311 106-134 (170)
75 TIGR00990 3a0801s09 mitochondr 52.3 6.5E+02 0.014 32.7 38.9 77 680-767 331-407 (615)
76 KOG0608 Warts/lats-like serine 52.0 9.8 0.00021 47.9 2.6 37 1273-1312 739-777 (1034)
77 cd00871 PI4Ka Phosphoinositide 51.7 45 0.00098 36.2 7.3 62 928-997 83-147 (175)
78 PF14559 TPR_19: Tetratricopep 49.8 24 0.00052 31.0 4.2 52 417-498 3-54 (68)
79 PF08424 NRDE-2: NRDE-2, neces 49.4 1.3E+02 0.0028 35.9 11.5 98 639-737 82-211 (321)
80 TIGR03843 conserved hypothetic 49.0 14 0.00031 41.7 3.1 45 1273-1318 134-178 (253)
81 PF06293 Kdo: Lipopolysacchari 48.7 69 0.0015 35.4 8.6 48 1147-1203 56-111 (206)
82 PF02985 HEAT: HEAT repeat; I 48.5 21 0.00046 26.9 3.0 29 94-122 1-29 (31)
83 KOG1129 TPR repeat-containing 47.7 60 0.0013 38.2 7.7 85 336-435 227-320 (478)
84 TIGR03724 arch_bud32 Kae1-asso 47.3 14 0.0003 40.1 2.7 24 1286-1311 113-136 (199)
85 cd04792 LanM-like LanM-like pr 46.6 1.7E+02 0.0037 39.7 13.4 108 1127-1314 111-218 (825)
86 KOG3087 Serine/threonine prote 45.8 1.2E+02 0.0025 33.7 9.0 28 1287-1314 137-166 (229)
87 PRK10359 lipopolysaccharide co 45.6 13 0.00028 42.2 2.1 23 1287-1311 159-181 (232)
88 cd05144 RIO2_C RIO kinase fami 44.5 17 0.00036 39.8 2.8 30 1285-1315 147-176 (198)
89 COG0661 AarF Predicted unusual 43.5 15 0.00032 46.7 2.4 25 1286-1311 288-312 (517)
90 KOG1155 Anaphase-promoting com 43.0 96 0.0021 38.3 8.8 83 337-433 403-494 (559)
91 KOG0594 Protein kinase PCTAIRE 42.3 17 0.00036 43.1 2.4 28 1287-1315 144-171 (323)
92 TIGR02552 LcrH_SycD type III s 42.0 1.9E+02 0.0041 28.9 10.0 68 679-754 50-117 (135)
93 PF13414 TPR_11: TPR repeat; P 42.0 56 0.0012 28.8 5.4 50 409-488 7-57 (69)
94 PF13428 TPR_14: Tetratricopep 41.7 76 0.0016 25.7 5.6 31 725-755 4-34 (44)
95 PRK04750 ubiB putative ubiquin 41.6 15 0.00032 46.9 2.0 26 1285-1311 282-311 (537)
96 cd05119 RIO RIO kinase family, 41.5 18 0.00038 38.8 2.4 25 1286-1312 138-162 (187)
97 PF12688 TPR_5: Tetratrico pep 41.2 1.3E+02 0.0027 30.7 8.3 62 679-745 37-98 (120)
98 PRK14879 serine/threonine prot 41.0 19 0.00042 39.3 2.7 24 1286-1311 118-141 (211)
99 smart00090 RIO RIO-like kinase 39.9 21 0.00045 40.6 2.7 28 1286-1315 172-199 (237)
100 PF13525 YfiO: Outer membrane 39.9 2.2E+02 0.0049 31.3 10.8 82 681-767 6-87 (203)
101 PF13424 TPR_12: Tetratricopep 39.5 1E+02 0.0022 27.9 6.8 70 679-749 4-73 (78)
102 TIGR01982 UbiB 2-polyprenylphe 39.4 19 0.00041 44.9 2.5 25 1286-1311 280-304 (437)
103 TIGR02521 type_IV_pilW type IV 39.1 3.2E+02 0.007 29.1 12.0 87 335-435 68-165 (234)
104 PF13429 TPR_15: Tetratricopep 37.7 1.2E+02 0.0027 34.8 8.8 87 335-435 149-244 (280)
105 cd00189 TPR Tetratricopeptide 37.4 2.3E+02 0.0051 24.5 9.0 62 683-752 3-64 (100)
106 KOG0603 Ribosomal protein S6 k 37.3 23 0.0005 45.0 2.7 55 1274-1333 426-480 (612)
107 TIGR00208 fliS flagellar biosy 37.2 3E+02 0.0066 28.1 10.3 50 546-595 33-89 (124)
108 PRK09550 mtnK methylthioribose 36.9 2.3E+02 0.0049 35.1 11.1 30 1281-1312 222-251 (401)
109 KOG0616 cAMP-dependent protein 36.7 19 0.0004 41.9 1.6 25 1287-1312 168-192 (355)
110 PF04781 DUF627: Protein of un 36.6 75 0.0016 31.9 5.6 43 727-769 1-43 (111)
111 PF13432 TPR_16: Tetratricopep 36.5 73 0.0016 27.7 5.1 52 411-492 3-54 (65)
112 KOG4626 O-linked N-acetylgluco 35.6 1.1E+03 0.024 30.6 30.3 90 332-435 48-146 (966)
113 PF01163 RIO1: RIO1 family; I 35.1 15 0.00034 40.2 0.7 27 1287-1315 131-157 (188)
114 TIGR02552 LcrH_SycD type III s 33.5 1.8E+02 0.004 29.0 8.3 87 335-435 20-115 (135)
115 KOG0612 Rho-associated, coiled 33.5 85 0.0019 42.8 6.9 124 1259-1386 172-335 (1317)
116 PLN03088 SGT1, suppressor of 33.4 2.2E+02 0.0047 34.6 10.2 87 335-435 5-100 (356)
117 PRK12274 serine/threonine prot 33.4 30 0.00066 38.8 2.6 25 1287-1312 115-140 (218)
118 PF00515 TPR_1: Tetratricopept 32.7 63 0.0014 24.2 3.6 26 410-435 6-31 (34)
119 PRK01723 3-deoxy-D-manno-octul 32.6 30 0.00064 39.4 2.5 25 1286-1311 165-189 (239)
120 PRK11788 tetratricopeptide rep 32.3 9.4E+02 0.02 28.7 29.4 63 682-752 109-171 (389)
121 PF12895 Apc3: Anaphase-promot 32.0 1.6E+02 0.0034 27.2 6.9 73 346-431 3-84 (84)
122 TIGR00540 hemY_coli hemY prote 32.0 1E+03 0.022 29.1 21.5 60 681-747 336-395 (409)
123 TIGR03302 OM_YfiO outer membra 31.7 3.5E+02 0.0075 30.0 10.9 83 680-767 33-115 (235)
124 PF07719 TPR_2: Tetratricopept 31.2 67 0.0014 23.9 3.5 26 411-436 7-32 (34)
125 cd05156 ChoK_euk Choline Kinas 29.9 36 0.00079 39.7 2.7 33 1279-1311 176-211 (302)
126 TIGR02795 tol_pal_ybgF tol-pal 29.8 2.8E+02 0.0062 26.5 8.7 69 682-755 41-109 (119)
127 PRK10803 tol-pal system protei 29.7 3.2E+02 0.0069 31.7 10.3 82 682-768 144-226 (263)
128 PRK15359 type III secretion sy 29.7 3.4E+02 0.0073 28.1 9.6 69 679-755 57-125 (144)
129 KOG1006 Mitogen-activated prot 29.2 33 0.00071 39.5 1.9 55 1287-1342 192-261 (361)
130 PRK15179 Vi polysaccharide bio 29.0 3.1E+02 0.0067 36.5 11.1 118 335-496 89-216 (694)
131 cd05120 APH_ChoK_like Aminogly 28.3 48 0.001 33.1 2.9 25 1287-1312 113-137 (155)
132 cd05154 ACAD10_11_like Acyl-Co 28.1 43 0.00093 36.6 2.8 32 1280-1311 172-204 (223)
133 PRK15359 type III secretion sy 28.0 2.3E+02 0.005 29.4 8.0 49 410-488 63-111 (144)
134 COG3642 Mn2+-dependent serine/ 26.9 48 0.001 36.5 2.6 33 1169-1202 57-91 (204)
135 PF13371 TPR_9: Tetratricopept 26.8 1.5E+02 0.0032 26.3 5.6 51 413-493 3-53 (73)
136 cd05155 APH_ChoK_like_1 Unchar 26.4 48 0.001 37.3 2.8 29 1281-1311 163-192 (235)
137 PF06176 WaaY: Lipopolysacchar 26.2 51 0.0011 37.3 2.8 22 1287-1310 159-180 (229)
138 PRK05685 fliS flagellar protei 25.6 4.4E+02 0.0096 27.2 9.4 48 548-595 39-93 (132)
139 PRK10866 outer membrane biogen 25.6 4.8E+02 0.01 29.8 10.7 80 682-766 34-113 (243)
140 PF13513 HEAT_EZ: HEAT-like re 25.3 88 0.0019 26.5 3.6 34 87-120 22-55 (55)
141 PF00069 Pkinase: Protein kina 24.9 72 0.0016 35.6 3.8 48 1286-1334 121-171 (260)
142 KOG2076 RNA polymerase III tra 24.7 1.2E+03 0.027 31.4 14.8 142 714-944 131-272 (895)
143 PF09976 TPR_21: Tetratricopep 23.6 4.8E+02 0.01 26.8 9.5 61 683-748 51-111 (145)
144 KOG0598 Ribosomal protein S6 k 23.5 39 0.00084 40.4 1.3 25 1287-1312 149-173 (357)
145 TIGR03504 FimV_Cterm FimV C-te 23.4 1.3E+02 0.0028 25.1 3.9 39 725-764 2-40 (44)
146 cd05122 PKc_STE Catalytic doma 23.3 2.1E+02 0.0046 31.3 7.2 53 1284-1337 119-173 (253)
147 PF13424 TPR_12: Tetratricopep 23.2 3.8E+02 0.0082 24.0 7.7 67 335-433 8-74 (78)
148 PF04184 ST7: ST7 protein; In 23.1 1.4E+02 0.0031 37.3 5.9 63 722-785 259-322 (539)
149 PF01386 Ribosomal_L25p: Ribos 22.2 66 0.0014 30.8 2.4 16 1293-1308 73-88 (88)
150 cd00180 PKc Catalytic domain o 22.0 2.2E+02 0.0047 29.8 6.7 28 1285-1312 114-141 (215)
151 PF13428 TPR_14: Tetratricopep 21.5 1E+02 0.0022 25.0 3.0 26 410-435 6-31 (44)
152 PF13174 TPR_6: Tetratricopept 21.5 1.4E+02 0.003 21.8 3.7 30 725-754 3-32 (33)
153 cd05153 HomoserineK_II Homoser 21.3 67 0.0014 37.3 2.7 29 1282-1311 175-203 (296)
154 PF13512 TPR_18: Tetratricopep 21.2 7.8E+02 0.017 26.0 10.1 79 683-766 13-91 (142)
155 cd00189 TPR Tetratricopeptide 21.1 4.2E+02 0.0092 22.8 7.6 85 336-434 4-97 (100)
156 cd05157 ETNK_euk Ethanolamine 20.5 1.7E+02 0.0036 32.6 5.7 32 1280-1311 168-199 (235)
157 PRK05231 homoserine kinase; Pr 20.1 72 0.0016 37.6 2.7 26 1284-1311 189-215 (319)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-163 Score=1571.62 Aligned_cols=1206 Identities=39% Similarity=0.575 Sum_probs=960.4
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCc
Q 000581 5 VDWHSDHDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDA 84 (1408)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1408)
.+|+.+++++..+|..+++-....+-+.....-+|+.+++..|+|.++|++|+..+++|+-.-..+. .+.-+.-.+-.
T Consensus 1510 ~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~--~~~n~~~~~K~ 1587 (2806)
T KOG0892|consen 1510 WFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFF--EGSNIMELTKN 1587 (2806)
T ss_pred hHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhcc--ccchhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999999998877754432222 23334444556
Q ss_pred cchHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHHhcccccchhhhchhHHHHHHHHHhhccCcchhhHhhhhhhhhhh
Q 000581 85 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 164 (1408)
Q Consensus 85 ~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1408)
++.++........+..+..+..+.+.....++....+++-.+......++.|.+.+++++
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------------------- 1647 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------------------- 1647 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchh--------------------
Confidence 788888888888999999999999999999999999999888888777888877777632
Q ss_pred hcCCCCCCCCCccccCCCCHHhhHHHHHHHhhccCCchhhHhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHH
Q 000581 165 KANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLIS 244 (1408)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~s~~eWlr~l~~~Ll~~~~s~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~~~d~~~~~~~~Ls 244 (1408)
|.++......|++.+...+|-.+.+.. |..+....--+-+.++|.+..+
T Consensus 1648 ------------~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~n---------------- 1696 (2806)
T KOG0892|consen 1648 ------------LSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLKN---------------- 1696 (2806)
T ss_pred ------------hccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhccccc----------------
Confidence 444445568899999988874333322 4444444444444444433200
Q ss_pred HHHHhhhhhcchhhHHHHHHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccc
Q 000581 245 SQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTS 324 (1408)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~q~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1408)
......+-+|.+.++|.+ ++..+ -+.
T Consensus 1697 -------------~~~~~~m~~ni~~~~~~~---~~~~~--------------------------------------~n~ 1722 (2806)
T KOG0892|consen 1697 -------------SNSIFKMDMNILKYLRRQ---LGCHA--------------------------------------FNP 1722 (2806)
T ss_pred -------------hhHHHHHHHHHHHHHHHh---hchhh--------------------------------------hcc
Confidence 011223344555566544 11100 023
Q ss_pred cccccccccCHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhh
Q 000581 325 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ 404 (1408)
Q Consensus 325 ~~~~~wL~Id~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~ 404 (1408)
|...+|+++++...+-.+.+|.+|-..++|.=+...+ ..++.+.....+++|.++|+.|++||+.||+..
T Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----------~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~ 1792 (2806)
T KOG0892|consen 1723 FEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----------NKRDELDITLLQDILKKAYESINCPDALYGIKR 1792 (2806)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----------cchhHHHHHHHHHHHHHHHhhCCCcchhcccCC
Confidence 4556789999999888888888888777776542110 111122234456667777999999999999998
Q ss_pred ccchh-hHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000581 405 SHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1408)
Q Consensus 405 ~~~l~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1408)
...++ .++..+||+++|.+||..||..-. .|+ ++ ...|.+++|++.|
T Consensus 1793 ~~~~~~~~l~~~~he~~w~~aL~~~d~~~~------------------~~s-------s~-------~~~~~~~sLq~~g 1840 (2806)
T KOG0892|consen 1793 PTSLKNLILITAEHEKNWPRALSYYDLADM------------------YPS-------SE-------DEAGFINSLQNAG 1840 (2806)
T ss_pred cccccccccchhhhhhhHHHHHHhhcchhh------------------ccc-------hH-------hHhHHHHHHHHhc
Confidence 77777 689999999999999999998643 233 12 2489999999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHH
Q 000581 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1408)
Q Consensus 484 ~~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al~~~d~~~~ 563 (1408)
+.|++..|++|++... ..++++..+..|++|||+|+||...+++-+ .....+..||..+|.+++|+++++++++
T Consensus 1841 ~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~ 1914 (2806)
T KOG0892|consen 1841 FFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGS 1914 (2806)
T ss_pred chhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999875 467788889999999999999986543211 1445677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHHHhhhhcc-CCccccccccccccCCCCCcchhhhhHHH
Q 000581 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSS-GESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1408)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1408)
..+++.+|...+..++..+.|+....|+.+.+||.+.+||.+.++.+... ++.......+.....++..+..+..+++.
T Consensus 1915 yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~ 1994 (2806)
T KOG0892|consen 1915 YLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADKHQSNTDILQKWKTNLQLSSQLMECLSLLI 1994 (2806)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcchhhhhHHHHHHHHHHhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876322 10000000011001111111223333444
Q ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhh
Q 000581 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYW 722 (1408)
Q Consensus 643 ~~W~~rl~~~q~~~~~~epil~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~ 722 (1408)
..|+..+...+.+...-++.++.+..++...+++...+..-++.+.+.++-.+ .+.+...+.+.++
T Consensus 1995 ~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r--~~~~i~~~~~~~~------------ 2060 (2806)
T KOG0892|consen 1995 EDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIAR--AFPVIMLSIKLLC------------ 2060 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHH--hhHHHHHHHHHHh------------
Confidence 44444444444444444444444444444444443333333333333333222 2222222222222
Q ss_pred hHHHHHHHHHHHcCChH-------------HHHHHHHHHH-hhccCCCchhHHHHHHhHHHHhhhcCChHHHHHHhhccc
Q 000581 723 LGRLEEAKLLRAQGQHE-------------MAINLAKYIS-ENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPA 788 (1408)
Q Consensus 723 ~a~lE~Ak~LW~~Ge~~-------------~Ai~~Lk~i~-~~~~~~~~~a~l~~llG~wlaet~~e~~~~I~~~Y~~~a 788 (1408)
.++.|+..|+++... +++.++.... ++...+....++++.+|+|++|++++++..|+++|+++|
T Consensus 2061 --~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a 2138 (2806)
T KOG0892|consen 2061 --KFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKWLAETKSENSALISEKYLEKA 2138 (2806)
T ss_pred --hhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 233444444443322 2222222222 222233456889999999999999999999999999999
Q ss_pred cccccccccch-hHHHHHhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhH
Q 000581 789 VSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSI 867 (1408)
Q Consensus 789 ~~~~~~~~~~~-~~~~~~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~ 867 (1408)
+..++.+.... ++.......+++++|+|.|.+|+.+++|+++.+|+.+++++++..++++.+.++-... + +.
T Consensus 2139 ~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~----~---~~ 2211 (2806)
T KOG0892|consen 2139 VSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQM----R---KN 2211 (2806)
T ss_pred HHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHH----H---HH
Confidence 98887663222 2334455689999999999999999999999999999999999988888654443221 1 12
Q ss_pred HHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhccCChHHHHHHHHHhhcccCccc
Q 000581 868 KIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK 947 (1408)
Q Consensus 868 ~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~k 947 (1408)
+..+.++++.+|++++.++..+|.+||..|++||++|+..|++|+...++|+|+|||++++.+++++.|.+.+.+||+||
T Consensus 2212 ~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyK 2291 (2806)
T KOG0892|consen 2212 HHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYK 2291 (2806)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcch
Confidence 44567899999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhcCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHHhhcCcc-chhhcccccchhhhhhHHHHHHHH
Q 000581 948 FIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR-IKDKQRSRNSFVVDMDKKLAAENL 1026 (1408)
Q Consensus 948 fl~~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~l~~~~~s~~-~~~~~~~~~~~~v~~~~~~~a~~i 1026 (1408)
|+||++||+|||+. .++..||+.|..|+.+++++||||++|+|+++.+.++ .++..+++.+ ++.+|..+|+.+
T Consensus 2292 Fip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~s--l~~~rki~a~l~ 2365 (2806)
T KOG0892|consen 2292 FIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGS--IDRDRKIAAELD 2365 (2806)
T ss_pred hHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccc--cchhHHHHHHHh
Confidence 99999999999994 2467899999999999999999999999999998877 4556667765 788999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccc-ccchhh--hhhccccccccccccccCCCCCCcccCCCcccc
Q 000581 1027 LEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPRE--IRCLRQLELVPVVTATVPIDCTCQYNEGSFPYF 1103 (1408)
Q Consensus 1027 l~~l~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~-~~l~~~--l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i 1103 (1408)
+.......+.++++++.+|++|+.||+.++.+.++..+ +.+|.. +.+..+++.+|+||+++++++++.| +++|+|
T Consensus 2366 ~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~pT~ev~v~~s~~~--~~~p~i 2443 (2806)
T KOG0892|consen 2366 LCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPPTMNVKVNDSGDY--GNIPTV 2443 (2806)
T ss_pred hhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCCCCCccccCCccc--CCCceE
Confidence 99988899999999999999999999987776666655 556554 4455677888999999999887755 558999
Q ss_pred ccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCC
Q 000581 1104 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 1183 (1408)
Q Consensus 1104 ~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~ 1183 (1408)
.+|.++|.+++|++.||+|+|.||||++|++|+|+|+||||||++|+|+|+++|++|.++++|++|+|.|||||||||+|
T Consensus 2444 ~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~ 2523 (2806)
T KOG0892|consen 2444 VSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSP 2523 (2806)
T ss_pred EecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchH-----hHHHHHHHHHhhhhhhHHHHHHHHcC
Q 000581 1184 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFL 1258 (1408)
Q Consensus 1184 ~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~k~~~f~~i~~~~~pvl~~~f~~~f~ 1258 (1408)
.+|+||||.||+||++||.... +|+|+||+|+||++.+||++|++.+ +|+++|.+||.+|.||||+||+|.||
T Consensus 2524 ~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~ 2601 (2806)
T KOG0892|consen 2524 KAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFP 2601 (2806)
T ss_pred ccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcC
Confidence 9999999999999999998644 8999999999999999999998766 89999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccc
Q 000581 1259 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1338 (1408)
Q Consensus 1259 ~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~ 1338 (1408)
+|.+||++|++||||+|+.|||||||||||||.+|||||..||||||||||++||||+.+|+||+||||||||||||||+
T Consensus 2602 dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGI 2681 (2806)
T KOG0892|consen 2602 DPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGI 2681 (2806)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCC
Q 000581 1339 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMN 1398 (1408)
Q Consensus 1339 ~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~ 1398 (1408)
|||||+||||||.||.+||++++++++|||+|+||||++|.++|+|++++|++++++++|
T Consensus 2682 tGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~e~~e~~n 2741 (2806)
T KOG0892|consen 2682 TGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKEEDEENFN 2741 (2806)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHhhcchhcc
Confidence 999999999999999999999999999999999999999999999999999998889999
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-143 Score=1382.40 Aligned_cols=1154 Identities=26% Similarity=0.401 Sum_probs=866.6
Q ss_pred hhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCccchHHH
Q 000581 11 HDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDAGISEEL 90 (1408)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1408)
+++.+.+=.|..=|-... +.+..+.|+||+.+|.-||.|--|+--+. ++.. -...+--+.|.-|-. .
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~-~~~~~~~akcLg~lgaidp~~~~~k~q~~---------i~~~--~~~~~~~~~~~~i~~-~ 1146 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKT-SQLEELCAKCLGELGAIDPSCHRFKEQET---------IPSI--LQVLPIECSDLPIKF-I 1146 (2382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhhhhcccc---------cchh--hhccccccCchhhhh-H
Confidence 455566666666555544 78888999999999999999877765311 1111 122222333322333 4
Q ss_pred HHHHHHHHHHhhhcCcchhhchHHHHHHHHhcccccchhhhchhHHHHHHHHHhhccCcchhhHhhhhhhhhhh-hcCCC
Q 000581 91 LIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF-KANGI 169 (1408)
Q Consensus 91 ~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 169 (1408)
......++.-+++..+..-.+.++.+.+.++. ..|..-....++-.--+|+.+..-.-..+ .|.+++.+.. .....
T Consensus 1147 ~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~~~k~~~--~P~L~s~Y~sq~~~p~ 1223 (2382)
T KOG0890|consen 1147 DFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPNEVKEEM--EPTLTSRYASQKPEPS 1223 (2382)
T ss_pred HHHHHHHHHHHhcCcChhhhhHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHHHHHHHH--hhcccchhccCCCCCC
Confidence 55677788889999999999999999888887 22222112222222223332211111111 2333322220 00001
Q ss_pred CCCCCCccccCCCCHHhhHHHHHHHhhcc---C-CchhhHhcHHHHhhcHhHHHHHhHHHHHHHhcCC--CcchhHHHHH
Q 000581 170 SPEKSTVWETDGKTFETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSK--NVDVDLQKLI 243 (1408)
Q Consensus 170 ~~~~~~~w~~~~~s~~eWlr~l~~~Ll~~---~-~s~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~~~--d~~~~~~~~L 243 (1408)
.-....++... .++.+|+.+|+..|+.. + .++++.+|+.+...+-.++.+|+||++++|+... +...++.+++
T Consensus 1224 ~~~k~Piy~~~-lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~ei 1302 (2382)
T KOG0890|consen 1224 VGEKKPIYKSS-LGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEI 1302 (2382)
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 11223333332 23999999999999954 2 3589999999999998999999999999985432 2245555666
Q ss_pred HHHHHhhhhhcc-----hhhHHHHHHHHHHHHHHHHhh------HhhhccCCCCCcccccccccCCC---CCCCccchhh
Q 000581 244 SSQVQKYIFTES-----NKLIKSIQVFLNALNELRLCH------VMERSSSVPPKRESSKYVKHSGS---SAKPRSTSAK 309 (1408)
Q Consensus 244 s~~~~~~~~~~~-----~~~~~~~q~~l~~~~~Lr~~~------~ae~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~ 309 (1408)
-.++++...+.- ....-.++++|..++||..+- ++++... +.+.+| +.-+..+.
T Consensus 1303 l~vl~~~~~~t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~----------~sk~~R~~~~~~~~Tt~-- 1370 (2382)
T KOG0890|consen 1303 LSVLDEAATNTINSRGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKI----------WSKVNRFWKSIMSWTTT-- 1370 (2382)
T ss_pred HHHHhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHhhhhheeeeccccC--
Confidence 666665322211 122468899999999986552 1222210 111122 01010000
Q ss_pred hhhhhhhcccccccccccccccccCHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHH
Q 000581 310 ARDVVATSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSA 389 (1408)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~I 389 (1408)
-.+++.+ ..|..-|+-.++|.|..+|++|++|+||+|.+... +.. .+......-+|+.+
T Consensus 1371 ~~~~~~v----------~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~----------ek~-~~~~e~l~fllq~l 1429 (2382)
T KOG0890|consen 1371 GEDIEGV----------QSFLDLIPSDTLARASFRCKAYARALMYLESHRST----------EKE-KETEEALYFLLQNL 1429 (2382)
T ss_pred CCchhhh----------HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccc----------cch-hHHHHHHHHHHHHH
Confidence 0111111 12445678889999999999999999999985110 110 12223445567779
Q ss_pred HHhcCCchhhhhhhh----ccchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhh
Q 000581 390 VTQINEPDSLYGIIQ----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENE 465 (1408)
Q Consensus 390 y~~IdePD~~yGi~~----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~ 465 (1408)
|..|+||||+.|+.. .+++..+|..+|..|+|.+|.+|||...+.+ |+
T Consensus 1430 Y~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~-----------------p~----------- 1481 (2382)
T KOG0890|consen 1430 YGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQKD-----------------PD----------- 1481 (2382)
T ss_pred HHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCC-----------------Cc-----------
Confidence 999999999999976 4678999999999999999999999999965 33
Q ss_pred hhhccchhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhh
Q 000581 466 MMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFH 545 (1408)
Q Consensus 466 ~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~ 545 (1408)
+..++.|+++|+.+.|+..++-...+|+..... ++-.++.-+..+||||+++||.++++.. ..+...|.
T Consensus 1482 --~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~ 1550 (2382)
T KOG0890|consen 1482 --KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWS 1550 (2382)
T ss_pred --cccchhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchh
Confidence 234688999999999999888778888766542 3445677789999999999999887632 22445565
Q ss_pred hh-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHhHHhHHHHHHHhhhhccCCcccccccc
Q 000581 546 EN-LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEK 623 (1408)
Q Consensus 546 ~~-L~~aL~al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-S~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~ 623 (1408)
.. +++++.+....|.-.+.+.|+.+|..+++++++++.| ||.++|+.+++||++.||+..++...+.+.+
T Consensus 1551 ~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~-------- 1622 (2382)
T KOG0890|consen 1551 VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD-------- 1622 (2382)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--------
Confidence 55 8999999999999999999999999999999999988 9999999999999999999998865443311
Q ss_pred ccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHhhc---cchHHHHHHHHHHHHHHhcCChhHHH
Q 000581 624 QKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILS---CKDFTMQHLLESASTLRKGFRLSQAA 700 (1408)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~epil~~R~~vl~il~---~~~~~~~~wl~~a~laRkag~~~~A~ 700 (1408)
++. ..-...|..|++++|+.+...|||+++|+.++++.. .++.++++|+++|++||++|+++.|+
T Consensus 1623 ----~~s--------~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1623 ----EDS--------ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred ----ccc--------cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 010 111268999999999999999999999999998743 46779999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh-ccCC--------C-c----hhHHHHHHh
Q 000581 701 AALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN-YESN--------E-E----APDVYRLVG 766 (1408)
Q Consensus 701 ~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~-~~~~--------~-~----~a~l~~llG 766 (1408)
++|.++... + .| -+.+|.||++|.+|+...|+..||..+.+ ++.. . . ...+..++|
T Consensus 1691 nall~A~e~------r-~~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1691 NALLNAKES------R-LP---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred HHHHhhhhc------c-cc---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 999886533 2 12 34689999999999999999999988744 3321 0 0 235678899
Q ss_pred HHHHhhhcCChHHHHHHhhccccccccccccchhHHHHHhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHH
Q 000581 767 KWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIE 846 (1408)
Q Consensus 767 ~wlaet~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~e 846 (1408)
+|+.++....+.+|++.|.. +..+. ++ +.+.||++|+|+|..+....
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~-~~ail-------~e----we~~hy~l~~yy~kll~~~~--------------------- 1807 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHD-AKAIL-------PE----WEDKHYHLGKYYDKLLEDYK--------------------- 1807 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHH-HHHHc-------cc----ccCceeeHHHHHHHHhhhhh---------------------
Confidence 99999999999999999987 53221 12 36799999999998864320
Q ss_pred HHHHHHHHhhcccCccchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhcc
Q 000581 847 LEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSL 926 (1408)
Q Consensus 847 l~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~ 926 (1408)
..+.+ ++ +....|+. ++-+|.+|+..|+.+.++++||++||||++
T Consensus 1808 ----------~~~~E------------~~------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1808 ----------SNKME------------KS------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred ----------ccccc------------cc------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence 00011 00 11224777 999999999999999999999999999997
Q ss_pred CCh-----------------HHHHHHHHHhhcccCccchhhhhHHHhhhcCCCccccccccHHHHHHHHHHHHHHhCChh
Q 000581 927 SSR-----------------QNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYH 989 (1408)
Q Consensus 927 ~~~-----------------~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~ 989 (1408)
|.. +.++..+.+++..+|+|.|+++++||+||||||++ .+-.+|.+||.++..+||||
T Consensus 1853 ~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq 1927 (2382)
T KOG0890|consen 1853 GTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQ 1927 (2382)
T ss_pred cchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchH
Confidence 421 13456677899999999999999999999999974 34479999999999999999
Q ss_pred HHHHHHHhhcCccchhhcccccchhhhhhHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 000581 990 TIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQ 1066 (1408)
Q Consensus 990 ~ly~l~~~~~s~~~~~~~~~~~~~~v~~~~~~~a~~il~~l~---~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~ 1066 (1408)
+||++.++.+|+.. .|....+.||++.. .....++.+...+.+.+.++|+.++.. +.+..+
T Consensus 1928 ~lW~~~a~~kS~~p--------------~R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~--ss~~~s 1991 (2382)
T KOG0890|consen 1928 TLWQSAALSKSNVP--------------SRVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS--SSKVLS 1991 (2382)
T ss_pred HHHHHHHHHhcccH--------------HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc--cccccc
Confidence 99999999887543 23345556776443 235567778888999999999865432 345566
Q ss_pred chhhhhhcccc-----ccccc---cccccCCCCC--CcccC-----CCccccccccceEEEecCCCcceEEEEEeCCCcE
Q 000581 1067 LPREIRCLRQL-----ELVPV---VTATVPIDCT--CQYNE-----GSFPYFKGLAESVMVMNGINAPKVVECFGSDGHK 1131 (1408)
Q Consensus 1067 l~~~l~~l~~l-----~~~p~---~t~~lp~~~~--~~y~~-----~~~~~i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~ 1131 (1408)
+...++++... .++|+ ...++|+... ..+.+ +..|+|.+|.+.|+|++|.++||+|+++||||+.
T Consensus 1992 l~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~ 2071 (2382)
T KOG0890|consen 1992 LKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKI 2071 (2382)
T ss_pred HHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCE
Confidence 76777644222 24554 2334444332 11111 2345799999999999999999999999999999
Q ss_pred EeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCC
Q 000581 1132 YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAH 1211 (1408)
Q Consensus 1132 y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~ 1211 (1408)
|.+|||+ +||||+|+|+|+|..+||.+|+||.++|||+|+||||+||||+.+|||||||||+.+|++|+.+.|...|.
T Consensus 2072 Y~~lCKp-KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~- 2149 (2382)
T KOG0890|consen 2072 YPFLCKP-KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK- 2149 (2382)
T ss_pred eEEEeCc-hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc-
Confidence 9999997 79999999999999999999999999999999999999999999999999999999999999987743332
Q ss_pred CCCCCCchhhHHHHhhh----cchHhHHHHHH-HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000581 1212 GRYGIGDWSFLKCREHM----SNVKDKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1408)
Q Consensus 1212 ~~~~~~~~~~~~~~~~~----~~~~~k~~~f~-~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgL 1286 (1408)
+-++ .+++..+ ....++.++|. +++++|||||++||.++||+|..||..|.+|+||+||||||||||||
T Consensus 2150 --~~~~----~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGL 2223 (2382)
T KOG0890|consen 2150 --WMIK----KQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGL 2223 (2382)
T ss_pred --cchh----hHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111 1333222 12355778885 68999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcCchHHHHH
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTI 1366 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~~~~~l~~i 1366 (1408)
||||++|||||..||++||+||+|+|++|..|++||.||||||+|||||||++|+||.||++||.||++||+|++.+|+|
T Consensus 2224 GDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSi 2303 (2382)
T KOG0890|consen 2224 GDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSI 2303 (2382)
T ss_pred ccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcccccc
Q 000581 1367 VEVFIHDPLYKWAL 1380 (1408)
Q Consensus 1367 Le~f~~Dpl~~W~~ 1380 (1408)
|+.|+||||+.|..
T Consensus 2304 L~tF~~DPlvew~~ 2317 (2382)
T KOG0890|consen 2304 LETFVYDPLVEWNR 2317 (2382)
T ss_pred HHHHHhCchhhccC
Confidence 99999999999996
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-92 Score=943.11 Aligned_cols=1010 Identities=25% Similarity=0.381 Sum_probs=763.5
Q ss_pred CHHhhHHHHHHHhhccCCchhhHhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhHHHH
Q 000581 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1408)
Q Consensus 183 s~~eWlr~l~~~Ll~~~~s~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~~~d~~~~~~~~Ls~~~~~~~~~~~~~~~~~~ 262 (1408)
.|.+|++.+.+.++++++++++|+|..+...+.++|+.+||++|.+||.+.+ .+.+..+...+...+. .++. ++.+
T Consensus 1129 ~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~~~-~~~i-~e~~ 1204 (2341)
T KOG0891|consen 1129 DWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIALS-SPDI-PEII 1204 (2341)
T ss_pred cccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHHHh-CCcc-HHHH
Confidence 3999999999999999999999999999999999999999999999999864 5677777776666433 2222 2777
Q ss_pred HHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000581 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1408)
Q Consensus 263 q~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1408)
|+.+|. +|||+|. + + .+||...+++..|
T Consensus 1205 q~l~nl---------~ef~eh~------~-----------------------------------~--plpi~~~~L~~~~ 1232 (2341)
T KOG0891|consen 1205 QTLLNL---------AEFMEHD------D-----------------------------------K--PLPIPIKTLGLYA 1232 (2341)
T ss_pred HhhhhH---------HHHHHhc------c-----------------------------------c--CCCcchhhHHHHH
Confidence 777653 7777661 1 0 2677777999999
Q ss_pred HHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhh----ccchhhHHHHHHHh
Q 000581 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ----SHKLSSQIVTLEHE 418 (1408)
Q Consensus 343 ~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~----~~~l~~~i~~yE~e 418 (1408)
..|++|++||+|+|+++... ...++++.|+.|++..+.+|.+-|+.. ...+..+..|||++
T Consensus 1233 ~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l 1297 (2341)
T KOG0891|consen 1233 EKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKL 1297 (2341)
T ss_pred HHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhccccc
Confidence 99999999999999987542 346889999999999999999999975 23567888999999
Q ss_pred CCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhhccccc
Q 000581 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1408)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~~~ 498 (1408)
.+|++||.+|+.....+.+ ..+...|.|+|+.++|.|+.++......+..
T Consensus 1298 ~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~ 1347 (2341)
T KOG0891|consen 1298 HRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWEV 1347 (2341)
T ss_pred ccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCCC
Confidence 9999999999997663311 1124679999999999999987443322222
Q ss_pred cCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 000581 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSV 578 (1408)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al~~~d~~~~~~~i~~aR~~l~~~L 578 (1408)
.. .+.+..+++.+..+||.+++|+.+.++ ++.++..+++..+| ++.+++|.++++.+...+..+|+.++.++
T Consensus 1348 ~~-~~~~~~~ap~a~~~~~~~~~w~~~~~~--~s~~~~~~~~~~~~-----~a~~a~~~~~~~~~~~~~~~~~dll~~e~ 1419 (2341)
T KOG0891|consen 1348 AG-QEAKHKMAPLAAAAAWGLGQWDTMAEY--VSVMSEDSQDKAFF-----RAILALHRDEFEKAVKLIERARDLLDTEL 1419 (2341)
T ss_pred cc-hhHHHHHHHHHHHhhhccccchhhhhh--cccccccchhhHHH-----HHHHhhhhhHHHHHHHhcccHHHHHHHHH
Confidence 11 234456899999999999999987654 44444445555444 55779999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhh
Q 000581 579 ACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNL 658 (1408)
Q Consensus 579 s~~s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~ 658 (1408)
+++.+|||+++|..+++.||+.|+|++++. +..+ ++...+...|.+++.+++...+.
T Consensus 1420 ~~~~~Es~sr~y~~~~~~~~~~e~E~~~~~--k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~~ 1476 (2341)
T KOG0891|consen 1420 TAMAGESYNRAYGVMVRAQMLAELEEIIEY--KKLP---------------------ERRPIIAKTWWKRLQGCQKNVDD 1476 (2341)
T ss_pred HHHHhhHHhhchhhhhhhhhhhhHHHHHHh--hccc---------------------chhHHHHHHHHhhHHHhhccHHH
Confidence 999999999999999999999999999883 3221 23456778999999999999999
Q ss_pred hhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC-----CCCCCchhhhhHHHHHHHHHH
Q 000581 659 LEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG-----PGDQCSTVYWLGRLEEAKLLR 733 (1408)
Q Consensus 659 ~epil~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~-----~~~q~~~~~~~a~lE~Ak~LW 733 (1408)
|+.++.+|..++.. .+...+|++++.+||++|+..++.+.+..+..-... +.....|.+. +...+++|
T Consensus 1477 wq~~lr~~~~v~~p----~~~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v---~a~~~~~~ 1549 (2341)
T KOG0891|consen 1477 WQRILRVRSLVLSP----QEDMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVV---YAYLKYLW 1549 (2341)
T ss_pred HHHHHHHhhhccCC----CcchHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHH---HHHHhHHH
Confidence 99999999888653 557889999999999999999999998765321111 1112233333 55899999
Q ss_pred HcCChHHHHHHHHHHHhhccCCCchhHHHHHHhHHHHhhhcCChHHHHHHhhccccccccccccchhHHHHHhhhhhhHH
Q 000581 734 AQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHL 813 (1408)
Q Consensus 734 ~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wlaet~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 813 (1408)
+.+....|++.++...... .++.++.. .... .+.. ..+. +-+..+
T Consensus 1550 ~~~~~~~~~~~~~~~~s~l----------------~~d~~~~~-~~~~----------~~~~----~~~~----~~~~~l 1594 (2341)
T KOG0891|consen 1550 ATDSKDEAINTLQEFTSTL----------------NSDLGSDP-DELL----------SEPT----EAEK----QEYTKL 1594 (2341)
T ss_pred hhccchHHHHHhHHHHHHH----------------HhhcCCCc-hhhh----------hccc----chhh----hHHHHH
Confidence 9999999999876443321 11112111 1100 0000 0000 000000
Q ss_pred HHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHHHHHHHhhcHHHHHHh-------
Q 000581 814 AHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKL------- 886 (1408)
Q Consensus 814 A~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~lD~~e~~~l------- 886 (1408)
|++. +.+.++|+..... .+...-+..++..|..++..++.||+++-.-...... +...++..
T Consensus 1595 --~a~~-------~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~-~V~~l~~~~~~~~~~ 1663 (2341)
T KOG0891|consen 1595 --LARC-------FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE-VVQMLKQVTKAKYAP 1663 (2341)
T ss_pred --HHHH-------HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhhccccCC
Confidence 0111 1344566544321 1233334455666777777888888876211000000 00000000
Q ss_pred ----------------HHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhccCChHHHHHHHHHhhcccCccchhh
Q 000581 887 ----------------LDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIP 950 (1408)
Q Consensus 887 ----------------~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~kfl~ 950 (1408)
..--..|+.+|+++|++++..+.....+++.|+++|||.+|++++|..++..++..+|.+.|+.
T Consensus 1664 ~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~ 1743 (2341)
T KOG0891|consen 1664 GANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLE 1743 (2341)
T ss_pred ccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHH
Confidence 0112359999999999999999998899999999999999999999999999999999999999
Q ss_pred hhHHHhhhcCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHHhhcCccc---------hhhcccccchhhhhhHHH
Q 000581 951 LVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFVVDMDKKL 1021 (1408)
Q Consensus 951 ~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~l~~~~~s~~~---------~~~~~~~~~~~v~~~~~~ 1021 (1408)
++|||++||..+. ..+.+.+..++..+++.||+++.|++.+...+... .++++.+...++.++..+
T Consensus 1744 ~ipqLiari~~~~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lv 1818 (2341)
T KOG0891|consen 1744 VIPQLIARIHTPD-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLV 1818 (2341)
T ss_pred hHHHHHHHHhccc-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhh
Confidence 9999999999874 45778899999999999999999999776655432 233445555566666655
Q ss_pred HHHHH-------------HHHHH-hhHHHHHHHHHHHHHHHHHHHhhhcc-----cc-----------------------
Q 000581 1022 AAENL-------------LEELS-SYHGAIIRQMKQMVDVYIKLAELETR-----RE----------------------- 1059 (1408)
Q Consensus 1022 ~a~~i-------------l~~l~-~~~~~~~~~~~~l~~~~~~la~~~~~-----~~----------------------- 1059 (1408)
.-+.| +++.+ .+++ .++++.|++.+..+.++... ++
T Consensus 1819 s~elir~a~lwhe~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~ 1896 (2341)
T KOG0891|consen 1819 SEELIRVAILWHEQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQ 1896 (2341)
T ss_pred HHHHHHHHhhhHhhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHHh
Confidence 55544 22222 2344 46777777777776654211 11
Q ss_pred -----cccccc--------cchhhhhhcccccccccc-----ccccCCCCCCcccCCC-ccccccccceEEEecCCCcce
Q 000581 1060 -----DTNKRI--------QLPREIRCLRQLELVPVV-----TATVPIDCTCQYNEGS-FPYFKGLAESVMVMNGINAPK 1120 (1408)
Q Consensus 1060 -----~~~~~~--------~l~~~l~~l~~l~~~p~~-----t~~lp~~~~~~y~~~~-~~~i~~f~~~v~v~~s~~~Pk 1120 (1408)
+.++.| .+.++++.++.++.+.+. ...+++..+++|.++. +..|.+|.+++.|++++++||
T Consensus 1897 ~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRpr 1976 (2341)
T KOG0891|consen 1897 SGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRPR 1976 (2341)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhhH
Confidence 011111 133445555666555552 3456777788887762 346899999999999999999
Q ss_pred EEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHH
Q 000581 1121 VVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1200 (1408)
Q Consensus 1121 ~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~i 1200 (1408)
++.|+||||+.|.|++| |++|+|||+|+||+|++||+++..+.+|+||+|.|++|.|+|+++++|+|+||||+.|++..
T Consensus 1977 kl~i~gs~g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L 2055 (2341)
T KOG0891|consen 1977 KLVIRGSDGKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTL 2055 (2341)
T ss_pred HHhhcccchhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHH
Confidence 99999999999999999 78999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhcccCCCCCCCCCCCchhhHHHH---hhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhc
Q 000581 1201 LIGSTRNGGAHGRYGIGDWSFLKCR---EHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAA 1276 (1408)
Q Consensus 1201 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~ 1276 (1408)
+....... .......++...+.. .. -...+|..+|+........ .+++-++-..++++.|+.+|.+||+|+|+
T Consensus 2056 ~r~~r~~k--~i~l~~eh~~~~~~~l~~~~-ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~ 2132 (2341)
T KOG0891|consen 2056 IREYREKK--KIPLNIEHRVMLQMAPDYDH-LTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAV 2132 (2341)
T ss_pred HHHHHHhh--ccCCcchHHHHHhcCccccc-hhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHH
Confidence 65422111 122222222221110 00 0123577888888777777 78888888999999999999999999999
Q ss_pred cchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC-CCCCCCCCcccccchhhccccccccchhHHHHHHHHHH
Q 000581 1277 SSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSV 1355 (1408)
Q Consensus 1277 ~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~ 1355 (1408)
|||+|||+|+|||||+|.|+|+.||+++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+..|+.+|++
T Consensus 2133 msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~ 2212 (2341)
T KOG0891|consen 2133 MSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRV 2212 (2341)
T ss_pred HHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999986 56999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHhccCCccccccChHHHHHH
Q 000581 1356 MRTNKEALLTIVEVFIHDPLYKWALSPLKALQR 1388 (1408)
Q Consensus 1356 LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~ 1388 (1408)
+|.|++++++++++|+|||+++|+..+.+..++
T Consensus 2213 lr~~~~sl~a~leafvydplinwr~~~~~~~~~ 2245 (2341)
T KOG0891|consen 2213 LRTNKESLMAVLEAFVYDPLINWRLDDVLSPGK 2245 (2341)
T ss_pred hcCChHHHHHHHHhhhcccchhhhcccccchhh
Confidence 999999999999999999999999875444333
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-69 Score=744.77 Aligned_cols=1016 Identities=21% Similarity=0.246 Sum_probs=632.9
Q ss_pred CHHhhHHHHHHHhhccCCchhhHhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhHHHH
Q 000581 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1408)
Q Consensus 183 s~~eWlr~l~~~Ll~~~~s~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~~~d~~~~~~~~Ls~~~~~~~~~~~~~~~~~~ 262 (1408)
.|++|+..+.++++.+.+...++.|+-++..+-..+..++..++..||.+.-. ...+.+-..+.. ....+..++...
T Consensus 921 ~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~~-~~~~~~~~~~~~ 997 (2105)
T COG5032 921 FWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLKS-KLHLPTIPILIL 997 (2105)
T ss_pred HHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHHH-HhhcCCCCchhh
Confidence 39999999999999888999999999999999999999999999999987421 111111111222 122223333444
Q ss_pred HHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000581 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1408)
Q Consensus 263 q~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1408)
+..+.. -+++|++.+ ..+++.++...++..+
T Consensus 998 ~~~~~~------~n~~e~~~~-------------------------------------------~~~~~~~~~~~~~~~~ 1028 (2105)
T COG5032 998 QMLLDS------KNLTEFTEH-------------------------------------------QLKNLPLPSLSIGFYE 1028 (2105)
T ss_pred hhhhhh------cchhhhhhh-------------------------------------------hhheecchhhhhhHHH
Confidence 433321 123444432 2345677777777999
Q ss_pred HHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhcc----chhhHHHHHHHh
Q 000581 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLSSQIVTLEHE 418 (1408)
Q Consensus 343 ~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~----~l~~~i~~yE~e 418 (1408)
-.|+.++++++|.|.++.+. .....++.+++++.++.+.|..-|+.... .......+++..
T Consensus 1029 ~~~~~~~~~~~~~~~~~~~~---------------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 1093 (2105)
T COG5032 1029 SLCSFLAKLLHDEELYFFPL---------------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYL 1093 (2105)
T ss_pred HHHHHHHHHhHHHHHHhccc---------------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHH
Confidence 99999999999999865431 01356788999999999999999964321 233446899999
Q ss_pred CCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhhccccc
Q 000581 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1408)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~~~ 498 (1408)
++|.+++..|-....... + .. ....|.+++....|.|.......+.-.-
T Consensus 1094 ~~~~~~l~~~~~~~~~~~--------~---------------~~-------~~~~~~l~~~~~~~~~~~~~~L~~~~~~- 1142 (2105)
T COG5032 1094 QRWYEALNRYFELLSKGD--------R---------------LF-------AISFTKLRNVDALGKLELYSSLAEIDMF- 1142 (2105)
T ss_pred HHHHHHHHHHHHHHhhcc--------c---------------hh-------HHHHhhhhhhhHHHHHHHHHHHHHHhhh-
Confidence 999999999988777420 0 01 1246889999999988775433321111
Q ss_pred cCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHH-HHHHHHHHHH
Q 000581 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL-KHSKQELVLS 577 (1408)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al~~~d~~~~~~~i-~~aR~~l~~~ 577 (1408)
.+.+..+.-..++.+.++|..|.|+....+... +.....+..++.. ......+.++.+++.... ..++..++++
T Consensus 1143 ~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~e~--~~~k~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1217 (2105)
T COG5032 1143 LSLHRRRKLLETLVATAYEQVGEWYKAQQLYEV--AQRKARSKEFPFS---LQYLYWHINDIDCADKLQSVLAELSLVTG 1217 (2105)
T ss_pred hccCcchhhhhHHHHHHHHHHHhHHHHHHHHHH--HhhhcccccCchh---hHHHHHcccchhhHhhhhhhhhhcccccc
Confidence 111122223556778899999999975443211 1112233333331 246678889999999988 5677888888
Q ss_pred hhhh-hhhhHHHHHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHh---hh
Q 000581 578 VACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKR---TQ 653 (1408)
Q Consensus 578 Ls~~-s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~---~q 653 (1408)
+... ..+++.+++-...+.+...|+++++...++...+ .. .-.-...+.+.|..++.. ++
T Consensus 1218 ~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~l~~~~~~~ 1281 (2105)
T COG5032 1218 ISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------------FG---ALMLLSLSAELWDKILEGRSSCS 1281 (2105)
T ss_pred hhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------------hH---HHHHHHHHHhccchhhcchhhhh
Confidence 8887 6789999999999999999999998855543321 00 000123355688888877 66
Q ss_pred cchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhcC-CC------CCCCchhhhhHH
Q 000581 654 LHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-GP------GDQCSTVYWLGR 725 (1408)
Q Consensus 654 ~~~~~~epil~~R~~vl~il~~~~~~~~~wl~~a~laRkag-~~~~A~~aL~~l~~l~~-~~------~~q~~~~~~~a~ 725 (1408)
.....+-.....+..+.. .....++|++++..|++.+ +.......+..+..-.. .. ....++.. .
T Consensus 1282 ~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 1354 (2105)
T COG5032 1282 KSIKLSLNIWLDLSIVVS----PKDEPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPW---A 1354 (2105)
T ss_pred HHHHHHHHHHHHHhhhcC----HhhhhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCc---h
Confidence 666555544444432222 2223378999999999999 55566555554321110 00 00011111 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHhHHHHhhhc-CChHHHHHHhhccccccccccccchhHHHH
Q 000581 726 LEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRS-SNSRIILENYLKPAVSFSEDQRTTDKKSIE 804 (1408)
Q Consensus 726 lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wlaet~~-e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~ 804 (1408)
+..-+..|+......+....+.. ..+.+.++..... -....+...|.+.+ |.
T Consensus 1355 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~- 1407 (2105)
T COG5032 1355 LLDLKRLLATWRQNAFLRINPEL-------------LPLLSSLLNLQSSSLSKQLVSRGSSESA-------------IS- 1407 (2105)
T ss_pred hhhhhhhhhHHHHhhhhhhchhh-------------ccccchhhhccchhccccccccchhhhh-------------HH-
Confidence 22344444444433333221111 1111111111100 00000000000000 00
Q ss_pred HhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHH-----HHHHHhhc
Q 000581 805 RQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQE-----LQKQLAMD 879 (1408)
Q Consensus 805 ~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~-----~~~~~~lD 879 (1408)
... ++.|.-... .+.+.|.+..++......+.. ++..+......++.+|++.... .+--....
T Consensus 1408 --~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 (2105)
T COG5032 1408 --INS---FASVARKHF------LPDNQLKKIYQLSNILISEAF-LLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQ 1475 (2105)
T ss_pred --HHH---HHHHHHHhc------CcHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHH
Confidence 000 111000000 000112221111110000000 1111111111122233322110 00000000
Q ss_pred HHHHH-HhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhccCChHHHHHHHHHhhcccCccc-hhhhhHHHhh
Q 000581 880 REEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK-FIPLVYQIAS 957 (1408)
Q Consensus 880 ~~e~~-~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~k-fl~~lpQLis 957 (1408)
+.+.. ........+..++++..+.+......-+.++.+|.+.+|+..+....+.+....+........ |++++||+..
T Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1555 (2105)
T COG5032 1476 ESEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQ 1555 (2105)
T ss_pred HHHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhh
Confidence 11111 112233455667888888999888888888999999999999987677777777777666665 8888888888
Q ss_pred hcCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHHhhcCccc---------hhhcccccchhhhhhHHHHHHH---
Q 000581 958 RMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFVVDMDKKLAAEN--- 1025 (1408)
Q Consensus 958 RL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~l~~~~~s~~~---------~~~~~~~~~~~v~~~~~~~a~~--- 1025 (1408)
++..... .-...+..++.++++.||++..|++.+...+... ..+.+.+....+........+.
T Consensus 1556 l~~~l~~-----~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~ 1630 (2105)
T COG5032 1556 LLSSLSL-----LDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRI 1630 (2105)
T ss_pred hhhhcch-----hHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhh
Confidence 8776432 2235688999999999999999999754432211 1111222211221111111111
Q ss_pred ---------------HHHHHHhhHHHHHHHHHHHHHHHHHHHhh---hccc--c--------------------------
Q 000581 1026 ---------------LLEELSSYHGAIIRQMKQMVDVYIKLAEL---ETRR--E-------------------------- 1059 (1408)
Q Consensus 1026 ---------------il~~l~~~~~~~~~~~~~l~~~~~~la~~---~~~~--~-------------------------- 1059 (1408)
++.++.....+ +.........+... .+.. .
T Consensus 1631 ~~~l~~~~~~~~l~q~~~r~~~~~~~----i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D 1706 (2105)
T COG5032 1631 AYPLLHLLFEPILAQLLSRLSSENNK----ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKID 1706 (2105)
T ss_pred hhhhhhhhHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 11111111010 00011111111100 0000 0
Q ss_pred --cccccc--------cchhhhhhccccc---cccccc--c-ccCCCCCCcccCC-CccccccccceEEEecC-CCcceE
Q 000581 1060 --DTNKRI--------QLPREIRCLRQLE---LVPVVT--A-TVPIDCTCQYNEG-SFPYFKGLAESVMVMNG-INAPKV 1121 (1408)
Q Consensus 1060 --~~~~~~--------~l~~~l~~l~~l~---~~p~~t--~-~lp~~~~~~y~~~-~~~~i~~f~~~v~v~~s-~~~Pk~ 1121 (1408)
..+... ++++.+....... .-|... . ...+..+++|..+ ++|.|.+|.|++.+++| .++||+
T Consensus 1707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~r 1786 (2105)
T COG5032 1707 ISLLNLSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRR 1786 (2105)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCceeeeecccccceE
Confidence 000000 0111111110000 011100 0 1223334566544 67899999999999988 999999
Q ss_pred EEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHh
Q 000581 1122 VECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYL 1201 (1408)
Q Consensus 1122 i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il 1201 (1408)
++++|+||+.|++++|+ +||+|||++|||++++||++|+++++|+||++.|++|+||||||++|+||||||++|||.|+
T Consensus 1787 l~~rgsdG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~ 1865 (2105)
T COG5032 1787 LTIRGSDGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSIL 1865 (2105)
T ss_pred EEEEecCCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHH
Confidence 99999999999999995 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCchhhHHHHh-----hhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhc
Q 000581 1202 IGSTRNGGAHGRYGIGDWSFLKCRE-----HMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAA 1276 (1408)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~ 1276 (1408)
....+ ++++. ..++.+ .......|.+.|...+.+++|+|++||++.|++|.+|+.+|+|||+|+|+
T Consensus 1866 ~~~~~------~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ 1936 (2105)
T COG5032 1866 REYHK------RKNIS---IDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAV 1936 (2105)
T ss_pred HHHhh------hcCCC---hhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHH
Confidence 86433 33322 122221 11122346788888888899999999999999999999999999999999
Q ss_pred cchhhheeccCCCCCCeeEEecCCCeEEEeechhhhc-ccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHH
Q 000581 1277 SSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSV 1355 (1408)
Q Consensus 1277 ~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~-~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~ 1355 (1408)
|||+|||||+|||||+|||+|+.||+++|||||++|+ +|+.+++||.|||||||||+++||++|+||.||.+|+.++++
T Consensus 1937 ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~ 2016 (2105)
T COG5032 1937 YSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRA 2016 (2105)
T ss_pred HHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977765 566799999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHhccCCccccccCh
Q 000581 1356 MRTNKEALLTIVEVFIHDPLYKWALSP 1382 (1408)
Q Consensus 1356 LR~~~~~l~~iLe~f~~Dpl~~W~~~~ 1382 (1408)
||+|++.||++|++|++|||++|...|
T Consensus 2017 LRk~~~~L~~~le~f~~d~l~~W~~~p 2043 (2105)
T COG5032 2017 LRKNADSLMNVLELFVRDPLIEWRRLP 2043 (2105)
T ss_pred HhccHHHHHHHHHHHhcCcchhhhcCc
Confidence 999999999999999999999999654
No 5
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.8e-69 Score=618.03 Aligned_cols=274 Identities=65% Similarity=1.165 Sum_probs=259.3
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.|.|.|++|+++||+|+++|+||+.|.||+|. +||+|||+|+||||++||++|++++||++|+|.|+||+|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 578999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhc-----chHhHHHHHHHHHhhhhhhHHHHHHHHc
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1257 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1257 (1408)
+++||||||+|++||++|+.... |.+.++.+.++....|++.+. ....++++|.+++++++|++++||++.|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999987543 567788888777666766653 2356789999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccc
Q 000581 1258 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1337 (1408)
Q Consensus 1258 ~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG 1337 (1408)
++|++||.+|++||+|+|++||+|||||||||||+|||||..||+++|||||++|++|+.+++||.|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCcccccc
Q 000581 1338 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1408)
Q Consensus 1338 ~~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~ 1380 (1408)
++|++|.|+.+|++++++||++++.|+++|++|+||||++|++
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~~ 279 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWTV 279 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCccccccC
Confidence 9999999999999999999999999999999999999999974
No 6
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=6.9e-68 Score=611.61 Aligned_cols=276 Identities=37% Similarity=0.646 Sum_probs=245.1
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.|+|.|++|+++||+|+++|+||+.|+||+|+ +||+|||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~-~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKG-REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCC----------CCC------CCCCchhhHHHHhhhc-------------chHh
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGA----------HGR------YGIGDWSFLKCREHMS-------------NVKD 1233 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~----------~~~------~~~~~~~~~~~~~~~~-------------~~~~ 1233 (1408)
+++||||||+|+.||.+++..+.+..+. +.. ..+.+..+.+....+. ..+.
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998653322111 000 0111111111111111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1234 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1234 k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
++++|.+++++++| .++++++..+++|++||.+|++||+|+|++||+|||||||||||+|||||+.||+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccc
Q 000581 1313 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1408)
Q Consensus 1313 ~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~ 1379 (1408)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|+
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 7
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=4.3e-67 Score=588.58 Aligned_cols=247 Identities=23% Similarity=0.373 Sum_probs=236.5
Q ss_pred cccccceEEEe-cCCCcceEEEEEeCCCcEEeeeeec-CccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEE
Q 000581 1103 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1180 (1408)
Q Consensus 1103 i~~f~~~v~v~-~s~~~Pk~i~~~gsdG~~y~~L~K~-g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViP 1180 (1408)
|.+|.|.+.|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999876 7889999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhh--hHHHHHHHHcC
Q 000581 1181 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1258 (1408)
Q Consensus 1181 Ls~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p--vl~~~f~~~f~ 1258 (1408)
|++++|||||++++.|+.+++.. |.++|.++++++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999987631 67899999999666 99999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC-CCCCCCCcccccchhhccc
Q 000581 1259 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMG 1337 (1408)
Q Consensus 1259 ~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l-~~pE~VPFRLTrniv~~mG 1337 (1408)
+|++||.+|++||+|+|++||+|||||||||||+|||||..||+|+|||||++|++|+.+ ++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999875 8999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccc
Q 000581 1338 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1408)
Q Consensus 1338 ~~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~ 1379 (1408)
++|+||+|+.+|++|+++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999996
No 8
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=4.4e-67 Score=601.21 Aligned_cols=276 Identities=37% Similarity=0.683 Sum_probs=245.9
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.|+|.|++|+++||+|+++|+||+.|+||+|+ +||+|||+|+||+|+++|.+|+++++|++|+|.++||+||||+
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHH--HhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCC
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC--REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1259 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~ 1259 (1408)
+++||||||+|+.||.+++.......+.........+....+ ...+ ....|.++|++++++.+| +|++||+..|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 999999999999999999976443332211000000000000 1111 234678999999998776 999999999999
Q ss_pred chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC-CCCCCCCCcccccchhhcccc
Q 000581 1260 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1338 (1408)
Q Consensus 1260 ~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~ 1338 (1408)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCcccccc
Q 000581 1339 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1408)
Q Consensus 1339 ~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~ 1380 (1408)
+|++|.|+.+|+.++++||+|++.|+++|++|+||||++|++
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999974
No 9
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=6.1e-65 Score=565.20 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.8
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.+.+.|++|+++||+++++|+||+.|+||+|. +||+|||+|+||+|+++|.+|+++++|++|+|.+++|+|+||+
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1262 (1408)
+++||||||+|+.||++++.. +++++||++.+++|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998641 4678899999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC-CCCCCCCCcccccchhhccccccc
Q 000581 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1341 (1408)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~ 1341 (1408)
|+.+|++|++|+|++|++|||||||||||+|||||+.||+++|||||++|++|+. +++||+|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccc
Q 000581 1342 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1408)
Q Consensus 1342 eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~ 1379 (1408)
||.|+.+|+.++++||++++.|+++|++|+|||+++|+
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999996
No 10
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.3e-63 Score=555.80 Aligned_cols=236 Identities=48% Similarity=0.912 Sum_probs=228.0
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.+++.|++|+++||+|++.|+||+.|.||+|. +||+|||+|+||+|+++|.+|.++++|++|++.++||+|+|++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1262 (1408)
+++||||||+|++||++++.+. .+|++++||.+.|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~----------------------------------------~~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEI----------------------------------------YPPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHh----------------------------------------CCHHHHHHHHHHCcCHHH
Confidence 9999999999999999987531 046899999999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccccccc
Q 000581 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1408)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1408)
|+.+|.+|+.|+|++|++|||||||||||+|||||+.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccc
Q 000581 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1408)
Q Consensus 1343 G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~ 1379 (1408)
|.|+.+|+.++++||++++.|+++|++|+||||++|+
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 11
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-58 Score=608.30 Aligned_cols=904 Identities=16% Similarity=0.213 Sum_probs=650.2
Q ss_pred cccCHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhcc---c
Q 000581 331 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---K 407 (1408)
Q Consensus 331 L~Id~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~---~ 407 (1408)
++++..++.--+-.-++|.+++.++|.+...+.. +. ........++|-+||.+|+|-|.+||+++.. .
T Consensus 2414 ~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~ 2484 (3550)
T KOG0889|consen 2414 IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFP 2484 (3550)
T ss_pred CCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccH
Confidence 5778889999999999999999999987654310 10 1223456899999999999999999999843 3
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhH
Q 000581 408 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 487 (1408)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~ 487 (1408)
-+.+...||..|.|++|+..||..+.+... + ..| ++++| +.-|+ ..+|+|.+.|.+|++
T Consensus 2485 eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~-----~~~-----~~~~E--y~lWe--d~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2485 ETMVALSYEQLGFWEEAQSLYEKAQVKARE-------G-----AIP-----YSESE--YKLWE--DHWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------c-----cCC-----CCcHH--HHHHH--HHHHHHHHHHHHHHH
Confidence 467889999999999999999999886532 1 112 23344 36676 569999999999999
Q ss_pred HHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHHhcCCh---HHHH
Q 000581 488 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEFY 564 (1408)
Q Consensus 488 L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al~~~d~---~~~~ 564 (1408)
+-.+++...+ .++-.|+|||+.+|+.+...... ...+..+..+|+..+|+++.++++.+. ..+.
T Consensus 2544 l~e~~k~~~~-----------~~llle~aWrlsdw~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 2610 (3550)
T KOG0889|consen 2544 LTEFGKHEGN-----------YELLLECAWRLSDWNDQKDALEQ--KAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFE 2610 (3550)
T ss_pred HHHHHhccCC-----------ceeeeehhccCCcchhHHHHHHH--hhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9888854222 34557899999999987654311 123455677888999999999986544 5777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHH
Q 000581 565 RKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 644 (1408)
Q Consensus 565 ~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (1408)
.+|..+-+.-+.++.+...-++..-++.+..+|++.|++|..++...+. ++. .++ .......++.+.++
T Consensus 2611 ~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~-~~n---~~n-------~~~~~~d~Ksil~~ 2679 (3550)
T KOG0889|consen 2611 RLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLN-DGN---VQN-------LDNKAQDIKSILQT 2679 (3550)
T ss_pred HHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcc-ccc---ccc-------cchhHHHHHHHHHH
Confidence 8888888888888888777666666788888999999999999854332 211 000 11123457888999
Q ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHhhc----c-----------------chHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000581 645 WSSILKRTQLHMNLLEPFMAFRRVLLQILS----C-----------------KDFTMQHLLESASTLRKGFRLSQAAAAL 703 (1408)
Q Consensus 645 W~~rl~~~q~~~~~~epil~~R~~vl~il~----~-----------------~~~~~~~wl~~a~laRkag~~~~A~~aL 703 (1408)
|+.|++...+++++|+.+..+|+.+++++. . ..+.....+.+|+.|||.|-...+...|
T Consensus 2680 Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L 2759 (3550)
T KOG0889|consen 2680 WRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQL 2759 (3550)
T ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999999999999999999999887641 0 1234556689999999999999999998
Q ss_pred HHHHhhcCCCCCCCchhhhhHHH-HHHHHHHHcC-ChHHHHHHHHHHHhhccCCCchhHHHHHHhHHHHhhhcCChHHHH
Q 000581 704 HELKFLYTGPGDQCSTVYWLGRL-EEAKLLRAQG-QHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIIL 781 (1408)
Q Consensus 704 ~~l~~l~~~~~~q~~~~~~~a~l-E~Ak~LW~~G-e~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wlaet~~e~~~~I~ 781 (1408)
..+-++. +.+..+++.++ |.|+..-..- |...+++.++..........++++.+.+-|.++++.+-..+..
T Consensus 2760 ~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn-- 2832 (3550)
T KOG0889|consen 2760 AKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN-- 2832 (3550)
T ss_pred HHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH--
Confidence 8876542 33455777777 8888888765 7888888877766666667789999999999999877554443
Q ss_pred HHhhccccccccccccchhHHHHHhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCc
Q 000581 782 ENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGE 861 (1408)
Q Consensus 782 ~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~ 861 (1408)
+.|.. |+++. ....+++..++.|+|.+++.= +.+
T Consensus 2833 ~~fs~-AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e---------------------------------~~n- 2866 (3550)
T KOG0889|consen 2833 KAFSA-AVQID-----------DGLGKAWAEWGKYLDNRFNKE---------------------------------PVN- 2866 (3550)
T ss_pred HHHHH-HHHHH-----------hhhHHHHHHHHHHHHHHHhcc---------------------------------Ccc-
Confidence 23433 65543 335678888999998886420 000
Q ss_pred cchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccH-HHHHHHHHHhhccC--ChHHHHHHHHH
Q 000581 862 KTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDV-RVVFRLVSLWFSLS--SRQNVIKNMVD 938 (1408)
Q Consensus 862 ~~~y~~~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~-~~~~RllsLWl~~~--~~~~v~~~~~~ 938 (1408)
..+.+.||-+|++++...+.+.. ..+.|+ |||--- ....+.+++.+
T Consensus 2867 -----------------------------i~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~~k 2915 (3550)
T KOG0889|consen 2867 -----------------------------ISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVFDK 2915 (3550)
T ss_pred -----------------------------cHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHHHH
Confidence 25777999999999999876655 345665 777442 23467899999
Q ss_pred hhcccCccchhhhhHHHhhhcCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHHhhcCccchh---------hc--
Q 000581 939 TIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKD---------KQ-- 1007 (1408)
Q Consensus 939 ~l~~vPs~kfl~~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~l~~~~~s~~~~~---------~~-- 1007 (1408)
++..||.+.|++|+|||+..+.+... ..+..++.+|++.||||+.|||.+....-.+.+ +.
T Consensus 2916 ~l~~ip~~~wl~~IPQLl~sLs~~e~--------~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~ 2987 (3550)
T KOG0889|consen 2916 FLGEIPVWNWLYFIPQLLTSLSKKEA--------KLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDT 2987 (3550)
T ss_pred hhccCCchhhhhhhHHHHhhccccch--------hHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999998642 568889999999999999999976542200000 00
Q ss_pred ---ccccchh-----------------hh-----hhHHHHHHHHHHHHH----hhHHHHHHHH------------HHHHH
Q 000581 1008 ---RSRNSFV-----------------VD-----MDKKLAAENLLEELS----SYHGAIIRQM------------KQMVD 1046 (1408)
Q Consensus 1008 ---~~~~~~~-----------------v~-----~~~~~~a~~il~~l~----~~~~~~~~~~------------~~l~~ 1046 (1408)
..|.+.+ ++ .-+..-.+.|++..- +.....+.++ -++++
T Consensus 2988 ~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~ 3067 (3550)
T KOG0889|consen 2988 TDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVN 3067 (3550)
T ss_pred CCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHH
Confidence 0011000 00 000011111111110 0000011110 01111
Q ss_pred HHHH-HHhhhccc-c--ccc----------------------------------cc-----ccchhhhh-----------
Q 000581 1047 VYIK-LAELETRR-E--DTN----------------------------------KR-----IQLPREIR----------- 1072 (1408)
Q Consensus 1047 ~~~~-la~~~~~~-~--~~~----------------------------------~~-----~~l~~~l~----------- 1072 (1408)
++.. .......+ . ..+ .. ..++.-+.
T Consensus 3068 al~~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~ 3147 (3550)
T KOG0889|consen 3068 ALLNIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLES 3147 (3550)
T ss_pred HHHHHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHH
Confidence 1111 00000000 0 000 00 00000000
Q ss_pred ---hc---ccccc-cccccc----ccCCCCCCccc-----CCCccccccccceEEEe-cCCCcceEEEEEeCCCcEEeee
Q 000581 1073 ---CL---RQLEL-VPVVTA----TVPIDCTCQYN-----EGSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKYRQL 1135 (1408)
Q Consensus 1073 ---~l---~~l~~-~p~~t~----~lp~~~~~~y~-----~~~~~~i~~f~~~v~v~-~s~~~Pk~i~~~gsdG~~y~~L 1135 (1408)
++ ..++. .+.... .-.++.+|+|. +..++.|.+|.|.|.++ ++...-||++++|+||+.|.|.
T Consensus 3148 k~~~~pk~~~LE~~s~~L~~F~hq~~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~ 3227 (3550)
T KOG0889|consen 3148 KVDRFPKKLNLEEKSRFLSNFSHQFDEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFA 3227 (3550)
T ss_pred HHhcccccccHHhhchHHhcccccCCcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeeccee
Confidence 00 00110 010000 11223344442 12467899999999877 6778889999999999999665
Q ss_pred ee-cCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCC
Q 000581 1136 AK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRY 1214 (1408)
Q Consensus 1136 ~K-~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~ 1214 (1408)
+. +|--+-|.++||+|+++++|..|.+++||+||++.+.++.+||+++...|+|.+|+.++|++|+.......|....+
T Consensus 3228 ~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~ 3307 (3550)
T KOG0889|consen 3228 VQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDD 3307 (3550)
T ss_pred eecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcch
Confidence 44 25678999999999999999999999999999999999999999999999999999999999998644332211111
Q ss_pred CCCch---hhHHHHhhhcc----hHhHHHHHHHHHhhhhh--hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheec
Q 000581 1215 GIGDW---SFLKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1285 (1408)
Q Consensus 1215 ~~~~~---~~~~~~~~~~~----~~~k~~~f~~i~~~~~p--vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLg 1285 (1408)
+... ...+|+..... .+-++.+|+.+...+.| ++++||.++|+++.++|.+|++|+.++|..++..|++.
T Consensus 3308 -~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~ln 3386 (3550)
T KOG0889|consen 3308 -PILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLN 3386 (3550)
T ss_pred -hhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHh
Confidence 1111 12233322211 23467899999999999 89999999999999999999999999999999999999
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhhh-cccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcCchHHH
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVAF-EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALL 1364 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~f-~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~~~~~l~ 1364 (1408)
+|-|.|+.+++.+.||.+..-||-+.. +..+.+...|.|||||||||..++|-.|+||.+-..+.++.+||-+..+.+-
T Consensus 3387 i~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~~~l~ 3466 (3550)
T KOG0889|consen 3387 INGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPDFELD 3466 (3550)
T ss_pred cCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCccchh
Confidence 999999999999999999999999887 4445688899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCccccccC
Q 000581 1365 TIVEVFIHDPLYKWALS 1381 (1408)
Q Consensus 1365 ~iLe~f~~Dpl~~W~~~ 1381 (1408)
.++..|++|.++.|...
T Consensus 3467 ~~l~~~~RDE~~~w~~~ 3483 (3550)
T KOG0889|consen 3467 PYLQLFFRDEIISWFKQ 3483 (3550)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999864
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=5.9e-60 Score=521.96 Aligned_cols=222 Identities=49% Similarity=0.891 Sum_probs=215.9
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
|.+|.+.|.|++|+++||+|+++|+||+.|.||+|. +||+|||+|++|+|+++|.+|+++.||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1262 (1408)
+++||||||+|+.||+ ++|++||+..|++|++
T Consensus 80 ~~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999987 3467788999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccccccc
Q 000581 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1408)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1408)
||.+|++|+.|+|++|++|||||||||||+|||||+.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCchHHHHHHHHhccC
Q 000581 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1373 (1408)
Q Consensus 1343 G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~D 1373 (1408)
|.|+.+|+.++++||+|++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=3.7e-55 Score=484.77 Aligned_cols=219 Identities=36% Similarity=0.616 Sum_probs=210.7
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
+..|.+.++|++|+++||+++++|+||+.|+|++|. +||+|||++++|+|+++|.+|+++. ++++.+++|.|||++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls 76 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLS 76 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEec
Confidence 356889999999999999999999999999999996 5999999999999999999999876 689999999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1262 (1408)
+++||||||+|+.|++ +.+++||...+++|++
T Consensus 77 ~~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 108 (219)
T cd00142 77 PRSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDE 108 (219)
T ss_pred CCceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999986 4578899999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccccccc
Q 000581 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1408)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1408)
|+++|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++++.+..||+|||||||||+++||+.|++
T Consensus 109 ~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~ 188 (219)
T cd00142 109 WQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh
Confidence 99999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCchHHHHHHHHhccC
Q 000581 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1373 (1408)
Q Consensus 1343 G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~D 1373 (1408)
|.|+.+|+.++.+||+|++.|+++|++|++|
T Consensus 189 g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 189 GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=1.4e-54 Score=505.49 Aligned_cols=269 Identities=23% Similarity=0.361 Sum_probs=236.5
Q ss_pred cccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHH
Q 000581 1083 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1159 (1408)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~l 1159 (1408)
....+|++|.. .+.+|. ++++|++|+++|+++++.|+| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 34667777743 355564 569999999999999999999 99999999964 9999999999999999999
Q ss_pred HhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHH
Q 000581 1160 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1239 (1408)
Q Consensus 1160 L~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~ 1239 (1408)
|+++. .+|.++||+|||+++++|+||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99875 78999999999999999999999999999998764221111 111
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC-C
Q 000581 1240 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1318 (1408)
Q Consensus 1240 ~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~-l 1318 (1408)
.+.+++||.+.+++|.+|..+|.+|++|+|+|||+||||||||||++|||||+ +|++||||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~-~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTK-TGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECC-CCCEEEEehHHhhccCCccC
Confidence 12578899999999999999999999999999999999999999999999995 999999999999997653 4
Q ss_pred C-CCCCCCcccccchhhcccccccc--chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhc
Q 000581 1319 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQ 1395 (1408)
Q Consensus 1319 ~-~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~ 1395 (1408)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|++.|++++++|+++++.+|+ +..+...-+++..+
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~--~~~~i~~l~~r~~l 317 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ--SIEDIEYLRDALAL 317 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC--cHHHHHHHHHHhCC
Confidence 4 69999999999999999999976 9999999999999999999999999999999999997 45677788888999
Q ss_pred CCCcc
Q 000581 1396 KMNTK 1400 (1408)
Q Consensus 1396 ~~~~~ 1400 (1408)
++++.
T Consensus 318 ~~s~~ 322 (352)
T cd00891 318 DKSDE 322 (352)
T ss_pred CCCHH
Confidence 88864
No 15
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=2.2e-53 Score=494.10 Aligned_cols=268 Identities=18% Similarity=0.320 Sum_probs=231.7
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHHH
Q 000581 1084 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1408)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL 1160 (1408)
...+|++|... +.++. ++++|++|+++|++|++.|+| |+.|.+|+|. +||||||+++||++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~-gDDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKA-GDDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHH
Confidence 45567777432 33332 678999999999999999999 9999999996 599999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHH
Q 000581 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1408)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1240 (1408)
+++. .+|.+++|+|+|+++++|+||||+|+.|+++|..... .. . .|.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g----~~-----~-------------------~~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEG----LT-----G-------------------SFK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhC----cc-----c-------------------ccc-
Confidence 9875 6899999999999999999999999999999865311 00 0 000
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCC-
Q 000581 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1319 (1408)
Q Consensus 1241 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~- 1319 (1408)
.+.+++||.+.++++..|..+|.+|++|+|+|||+||||||||||++||||| .+|++||||||++|++++...
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1257889999999999999999999999999999999999999999999999 599999999999999886432
Q ss_pred -CCCCCCcccccchhhccccc----cccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhh
Q 000581 1320 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKA 1394 (1408)
Q Consensus 1320 -~pE~VPFRLTrniv~~mG~~----g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~ 1394 (1408)
.||+||||||++|+++||.. +.+|.|+..|+.++.+||+|.+.|++++++|+++|+.+|+. ..+.+..+++..
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~--~~~i~~l~~r~~ 317 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK--IQDLKYVRDALR 317 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc--hhHHHHHHHHhC
Confidence 48999999999999999754 34579999999999999999999999999999999999984 356778888898
Q ss_pred cCCCccc
Q 000581 1395 QKMNTKG 1401 (1408)
Q Consensus 1395 ~~~~~~~ 1401 (1408)
+++++..
T Consensus 318 l~~s~~e 324 (353)
T cd05166 318 PQLTDAE 324 (353)
T ss_pred CCCCHHH
Confidence 9888653
No 16
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=2.2e-53 Score=494.37 Aligned_cols=259 Identities=24% Similarity=0.427 Sum_probs=233.7
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCCC---cEEeeeeecCccchhhhHHHHHHHHHHHH
Q 000581 1083 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNT 1158 (1408)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG---~~y~~L~K~g~dDlRqD~r~~Qlf~liN~ 1158 (1408)
....+|++|.. .|.++ .+++.|++|+++|+++++.|+|| +.|.+|+|.| ||||||+++||+|++||.
T Consensus 51 ~~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~ 121 (350)
T cd00896 51 EPIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDR 121 (350)
T ss_pred CCCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHH
Confidence 34567777743 33444 46799999999999999999999 9999999964 999999999999999999
Q ss_pred HHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHH
Q 000581 1159 FLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAF 1238 (1408)
Q Consensus 1159 lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f 1238 (1408)
+|+++. ++|.++||+|+|+++++|+||||+ +.|+++++.+..
T Consensus 122 il~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~--------------------------------- 163 (350)
T cd00896 122 LLKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG--------------------------------- 163 (350)
T ss_pred HHHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH---------------------------------
Confidence 999875 799999999999999999999999 999999864310
Q ss_pred HHHHhhhhhhHHHHHHHHcCCchHH----HHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcc
Q 000581 1239 QEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1408)
Q Consensus 1239 ~~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~ 1314 (1408)
.+.+||...++++..| ..+|.+|++|+|+|||+||||||||||++|||||. +|++||||||++|++
T Consensus 164 ---------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~-~G~~~HIDFG~ilg~ 233 (350)
T cd00896 164 ---------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGR 233 (350)
T ss_pred ---------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcC-CCCEEEEEhHHhhCC
Confidence 1567888888888774 69999999999999999999999999999999995 999999999999998
Q ss_pred cCCCCCCCCCCcccccchhhccccccccc--hhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHH
Q 000581 1315 GLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAW 1392 (1408)
Q Consensus 1315 g~~l~~pE~VPFRLTrniv~~mG~~g~eG--~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~ 1392 (1408)
+ |.|++||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++|+.+|+.+|.+.+...+++
T Consensus 234 ~---p~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~r 310 (350)
T cd00896 234 D---PKPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEK 310 (350)
T ss_pred C---CCCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHH
Confidence 8 4588899999999999999999999 9999999999999999999999999999999999999899999999999
Q ss_pred hhcCCCccc
Q 000581 1393 KAQKMNTKG 1401 (1408)
Q Consensus 1393 ~~~~~~~~~ 1401 (1408)
+.+++++..
T Consensus 311 f~l~~s~~e 319 (350)
T cd00896 311 FRLDLSDEE 319 (350)
T ss_pred hCCCCCHHH
Confidence 999998753
No 17
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.9e-52 Score=483.26 Aligned_cols=267 Identities=19% Similarity=0.299 Sum_probs=231.2
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHHH
Q 000581 1084 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1408)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL 1160 (1408)
+..+|++|. ..|.++. ++++|++|+++|+++++.++| |+.|.+++|.| ||||||++++|++++||++|
T Consensus 49 ~~~lPl~P~--------~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPA--------LRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCC--------eEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 456777774 3456665 478999999999999999999 89999999975 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHH
Q 000581 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1408)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1240 (1408)
+++. .+|.++||+|+|+++++|+||||+|+.|+++|...... .| . ..
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~-~~--------~---------~~----------- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGL-IG--------P---------LK----------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCC-Cc--------c---------cc-----------
Confidence 9875 78999999999999999999999999999998754210 00 0 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCC-
Q 000581 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1319 (1408)
Q Consensus 1241 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~- 1319 (1408)
.+.+.+||...++++.+|..++.+|++|+|+|||+||||||||||++||||+ .||++||||||++|++++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1247789999999999999999999999999999999999999999999999 599999999999999997643
Q ss_pred -CCCCCCcccccchhhccccccccc----hhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhh
Q 000581 1320 -TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKA 1394 (1408)
Q Consensus 1320 -~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~ 1394 (1408)
.||++|||||++|+++||..|.++ .|+..|..++.+||+|.+.|++++++|+++|+.+|+.. .+++.-++...
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~--~~i~~l~~~~~ 318 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDI--QDLKYVYNNLR 318 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcc--hHHHHHHHHhC
Confidence 489999999999998776656553 69999999999999999999999999999999999854 35677778888
Q ss_pred cCCCcc
Q 000581 1395 QKMNTK 1400 (1408)
Q Consensus 1395 ~~~~~~ 1400 (1408)
+++++.
T Consensus 319 l~~sd~ 324 (354)
T cd05177 319 PQDTDL 324 (354)
T ss_pred CCCCHH
Confidence 888764
No 18
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=2.6e-52 Score=484.10 Aligned_cols=269 Identities=22% Similarity=0.334 Sum_probs=232.8
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCC-----CcEEeeeeecCccchhhhHHHHHHHHHHH
Q 000581 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVN 1157 (1408)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsd-----G~~y~~L~K~g~dDlRqD~r~~Qlf~liN 1157 (1408)
...+|++|.. .+.++ .++++|++|+++|++|++.++| |+.|.+|+|.| ||||||++++|+|++||
T Consensus 53 ~~~lPl~P~~--------~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~ 123 (366)
T cd05165 53 SFQSPLNPSL--------KLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIMD 123 (366)
T ss_pred cCCCCCCCce--------eEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHHH
Confidence 3567777743 23333 3568999999999999999998 69999999965 99999999999999999
Q ss_pred HHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHH
Q 000581 1158 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1237 (1408)
Q Consensus 1158 ~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 1237 (1408)
.+|+++. .+|.+++|+|+|+++++|+||||+|+.|+++|........ ...
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--------------------------~~~ 173 (366)
T cd05165 124 SIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--------------------------TAA 173 (366)
T ss_pred HHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--------------------------ccc
Confidence 9999875 7899999999999999999999999999999875321100 000
Q ss_pred HHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC
Q 000581 1238 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1317 (1408)
Q Consensus 1238 f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~ 1317 (1408)
|. .+.+.+||.+.+++++.|..++.+|++|+|+|||+||||||||||++|||||+ ||++||||||++|+.++.
T Consensus 174 f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~ 246 (366)
T cd05165 174 FK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKS 246 (366)
T ss_pred cC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCc
Confidence 10 13578899999998899999999999999999999999999999999999996 999999999999998754
Q ss_pred -CC-CCCCCCcccccchhhcccccccc------chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHH
Q 000581 1318 -LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQ 1389 (1408)
Q Consensus 1318 -l~-~pE~VPFRLTrniv~~mG~~g~e------G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~ 1389 (1408)
++ .||+||||||++|+++||..|.+ |.|+.+|+.++.+||+|.+.|++++++|+..++.+++.. ...+.-
T Consensus 247 ~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~--~~i~~l 324 (366)
T cd05165 247 KFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTSK--EDIEYL 324 (366)
T ss_pred cCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCch--hHHHHH
Confidence 55 49999999999999999987776 899999999999999999999999999999999999853 467777
Q ss_pred HHHhhcCCCcc
Q 000581 1390 KAWKAQKMNTK 1400 (1408)
Q Consensus 1390 ~~~~~~~~~~~ 1400 (1408)
++++.+++++.
T Consensus 325 r~rf~l~~se~ 335 (366)
T cd05165 325 RDTLALGKSEE 335 (366)
T ss_pred HHHhCCCCCHH
Confidence 78888888865
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=2.3e-52 Score=474.16 Aligned_cols=240 Identities=23% Similarity=0.346 Sum_probs=216.1
Q ss_pred CCcceEEEEEeCCCc--EEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCC
Q 000581 1116 INAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 1193 (1408)
Q Consensus 1116 ~~~Pk~i~~~gsdG~--~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~ 1193 (1408)
+++||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|+|+++++|+||||+|
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~~----l~l~l~~Y~vip~~~~~GlIE~V~n 89 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEEG----LPLWLRPYEILVTSSNSGLIETIPD 89 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHCC----CCceeeeEEEEEccCCceeEEEeCC
Confidence 688999999988765 89999996 5999999999999999999999864 7899999999999999999999999
Q ss_pred CCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc-hHHHHHHHHHHH
Q 000581 1194 TVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYTR 1272 (1408)
Q Consensus 1194 t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~-~~w~~~R~~ft~ 1272 (1408)
+.|++++...... ..|.+++||.+.|++| +.|+.+|.+|++
T Consensus 90 s~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~ 131 (293)
T cd05168 90 TVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIE 131 (293)
T ss_pred chhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999997643110 1457889999999985 689999999999
Q ss_pred hhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccccccc--chhHHHHH
Q 000581 1273 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCE 1350 (1408)
Q Consensus 1273 S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~c~ 1350 (1408)
|+|+|||+||||||||||++|||||+ +|++||||||++|+.++....||+||||||++|+++||+.|.+ |.|+.+|+
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~ 210 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFL 210 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHH
Confidence 99999999999999999999999997 9999999999999999887789999999999999999999887 89999999
Q ss_pred HHHHHHhcCchHHHHHHHHhccC-CccccccChHHHHHHHHHHhhcCCCcc
Q 000581 1351 KTLSVMRTNKEALLTIVEVFIHD-PLYKWALSPLKALQRQKAWKAQKMNTK 1400 (1408)
Q Consensus 1351 ~t~~~LR~~~~~l~~iLe~f~~D-pl~~W~~~~~~~~~~~~~~~~~~~~~~ 1400 (1408)
.++.+||+|++.|++++++|+++ .+.+... +....+.-+++..+++++.
T Consensus 211 ~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~~r~~l~~se~ 260 (293)
T cd05168 211 KGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLRDRFMLNLTEE 260 (293)
T ss_pred HHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999 4666654 6677888888888888764
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=4.6e-52 Score=454.80 Aligned_cols=200 Identities=39% Similarity=0.685 Sum_probs=191.5
Q ss_pred eeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCC
Q 000581 1133 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1212 (1408)
Q Consensus 1133 ~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~ 1212 (1408)
.|++|. +||+|||+|++|+|+++|.+|++++|+++|++.++||.|+|+++++|+||||+|+.|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCC
Q 000581 1213 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1292 (1408)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~ 1292 (1408)
+++||.+.|++|.+|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 67789999999999999999999999999999999999999999
Q ss_pred eeEEecCCCeEEEeechhhhcccCCCCCC-CCCCcccccchhhccccccccchhHHHHHHHHHHHhcCchHHHHHHHHhc
Q 000581 1293 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1371 (1408)
Q Consensus 1293 NILld~~tG~vvHIDfg~~f~~g~~l~~p-E~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~ 1371 (1408)
||||+ .||+++|||||++|++++.+..| |.||||||+||+++||+.|++|.|+.+|+.++.+||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999886566 99999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCh
Q 000581 1372 HDPLYKWALSP 1382 (1408)
Q Consensus 1372 ~Dpl~~W~~~~ 1382 (1408)
+||+.+|+.++
T Consensus 191 ~d~l~~~~~~~ 201 (202)
T smart00146 191 YDGLPDWRSGK 201 (202)
T ss_pred CCCChhhcCCC
Confidence 99999998643
No 21
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.1e-50 Score=468.06 Aligned_cols=270 Identities=21% Similarity=0.294 Sum_probs=226.3
Q ss_pred cccCCCCCCcccCCCccccccccceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHHHhc
Q 000581 1085 ATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 1162 (1408)
Q Consensus 1085 ~~lp~~~~~~y~~~~~~~i~~f~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~ 1162 (1408)
..+|++|+.. ...-+.++++|++|+++|+++++.+.| |..|.+++|. +||||||++++|+|++||.+|++
T Consensus 53 ~~lPl~p~~~-------~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~-gDDLRQD~l~~Qli~lmd~i~k~ 124 (361)
T cd05174 53 LQSPLSPSII-------LCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKN-GDDLRQDMLTLQMIQLMDVLWKQ 124 (361)
T ss_pred CCCCCCCceE-------EEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHH
Confidence 4577777542 233356889999999999999999976 9999999996 59999999999999999999998
Q ss_pred CcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHH
Q 000581 1163 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 1242 (1408)
Q Consensus 1163 ~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~ 1242 (1408)
+. ++|.+++|+|+|+++++|+||||+|+.|+++|....... +. ...|.
T Consensus 125 ~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~--- 172 (361)
T cd05174 125 EG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN--- 172 (361)
T ss_pred CC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc---
Confidence 75 899999999999999999999999999999986531100 00 01111
Q ss_pred hhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccC--CCCC
Q 000581 1243 ENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKT 1320 (1408)
Q Consensus 1243 ~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~--~l~~ 1320 (1408)
.+.+.+||.+.+|+ +.|..++.+|++|+|+||++||||||||||++|||||+ +|++||||||++|+..+ ....
T Consensus 173 ---~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~~ 247 (361)
T cd05174 173 ---KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGIN 247 (361)
T ss_pred ---chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCCC
Confidence 13577888887765 34556799999999999999999999999999999995 99999999999999754 3457
Q ss_pred CCCCCcccccchhhccccccc-----cchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhc
Q 000581 1321 PERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQ 1395 (1408)
Q Consensus 1321 pE~VPFRLTrniv~~mG~~g~-----eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~ 1395 (1408)
||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++|+...+.+.+. .++.+.-++++.+
T Consensus 248 ~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~--~~~i~~l~~~~~l 325 (361)
T cd05174 248 RERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC--SKDIQYLKDSLAL 325 (361)
T ss_pred CCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc--hhHHHHHHHHhCC
Confidence 999999999999999974322 259999999999999999999999999999999998865 3678888888998
Q ss_pred CCCccc
Q 000581 1396 KMNTKG 1401 (1408)
Q Consensus 1396 ~~~~~~ 1401 (1408)
++++..
T Consensus 326 ~~se~e 331 (361)
T cd05174 326 GKTEEE 331 (361)
T ss_pred CCCHHH
Confidence 888754
No 22
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=4.2e-50 Score=465.07 Aligned_cols=269 Identities=25% Similarity=0.360 Sum_probs=223.7
Q ss_pred cccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeC--CCcEEeeeeecCccchhhhHHHHHHHHHHHHHHh
Q 000581 1085 ATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1161 (1408)
Q Consensus 1085 ~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gs--dG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~ 1161 (1408)
..+|++|.. .+.++ .++++|++|+++|++|++.+. +|..|.+|+|.| ||||||++++|++++||++|+
T Consensus 53 ~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~k 123 (362)
T cd05173 53 LQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLWK 123 (362)
T ss_pred CCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHH
Confidence 456777743 34444 356899999999999999864 799999999965 999999999999999999999
Q ss_pred cCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHH
Q 000581 1162 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1241 (1408)
Q Consensus 1162 ~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i 1241 (1408)
++. ++|.+++|+|+|+++++|+||||+|+.|+++|....... +. ...|.
T Consensus 124 ~~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (362)
T cd05173 124 EAG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFN-- 172 (362)
T ss_pred HCC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccC--
Confidence 864 789999999999999999999999999999986431100 00 00111
Q ss_pred HhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccC--CCC
Q 000581 1242 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 1319 (1408)
Q Consensus 1242 ~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~--~l~ 1319 (1408)
.+.+.+||.+.++ ++.|..++.+|++|+|+|||+||||||||||++|||||. +|++||||||++|++.+ ...
T Consensus 173 ----~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~ 246 (362)
T cd05173 173 ----KDALLNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRK-NGQLFHIDFGHILGNFKSKFGI 246 (362)
T ss_pred ----hhHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhccCCcccCC
Confidence 1356778876543 346667899999999999999999999999999999995 99999999999998743 345
Q ss_pred CCCCCCcccccchhhccc--ccc---ccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhh
Q 000581 1320 TPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKA 1394 (1408)
Q Consensus 1320 ~pE~VPFRLTrniv~~mG--~~g---~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~ 1394 (1408)
.||+||||||++|+++|| ..| .+|.|+.+|+.++.+||+|.+.|++++++|+..++.+++. .++.+..++++.
T Consensus 247 ~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~--~~~i~~l~~r~~ 324 (362)
T cd05173 247 KRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS--VKDIQYLKDSLA 324 (362)
T ss_pred CCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc--hhHHHHHHHhcC
Confidence 699999999999999985 333 4789999999999999999999999999999999999974 356788888899
Q ss_pred cCCCccc
Q 000581 1395 QKMNTKG 1401 (1408)
Q Consensus 1395 ~~~~~~~ 1401 (1408)
+++++..
T Consensus 325 l~~se~e 331 (362)
T cd05173 325 LGKSEEE 331 (362)
T ss_pred CCCCHHH
Confidence 9988753
No 23
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=1.2e-50 Score=459.33 Aligned_cols=241 Identities=22% Similarity=0.365 Sum_probs=208.4
Q ss_pred EEecCC-CcceEEEEEeCCC--cEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcce
Q 000581 1111 MVMNGI-NAPKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1187 (1408)
Q Consensus 1111 ~v~~s~-~~Pk~i~~~gsdG--~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~Gl 1187 (1408)
+++++. ..|-.+.+.-.|| ..|.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|||+++++|+
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~~----l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELMF----LDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHcC----CCceeEEEEEEECCCCcee
Confidence 344444 3465555554444 589999996 5999999999999999999999864 8999999999999999999
Q ss_pred EEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHHH
Q 000581 1188 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 1265 (1408)
Q Consensus 1188 IE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~~~~w~~ 1265 (1408)
||||+|+.|++++.... .+.+++||.+.|. ++..|++
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999976421 1236677888887 4678999
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC-CCCCCCCcccccchhhcccccccc--
Q 000581 1266 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1342 (1408)
Q Consensus 1266 ~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l-~~pE~VPFRLTrniv~~mG~~g~e-- 1342 (1408)
+|.+|++|+|+|||+||||||||||++|||||+ +|++||||||++|+.++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999998654 567999999999999999999887
Q ss_pred chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCCccc
Q 000581 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMNTKG 1401 (1408)
Q Consensus 1343 G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~~~~ 1401 (1408)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|+ ...++.-+++..+++++..
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~---~~~i~~l~~r~~l~~s~~~ 257 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR---GSTIKKLKERLCLNMSEKE 257 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC---HHHHHHHHHHcCCCCCHHH
Confidence 7899999999999999999999999999999999998 3456667777888877643
No 24
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.1e-50 Score=463.21 Aligned_cols=270 Identities=23% Similarity=0.348 Sum_probs=232.1
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCCC-----cEEeeeeecCccchhhhHHHHHHHHHH
Q 000581 1083 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1156 (1408)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG-----~~y~~L~K~g~dDlRqD~r~~Qlf~li 1156 (1408)
....+|++|... +.++ .++++|++|+++|.++++.+.|| ..|.+++|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 456778887532 2333 57789999999999999999886 5799999975 9999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHH
Q 000581 1157 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1236 (1408)
Q Consensus 1157 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1236 (1408)
|.+|+++. ++|++++|+|+|+++++|+||||+|+.|+++|........|
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------- 172 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTG--------------------------- 172 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccc---------------------------
Confidence 99998765 89999999999999999999999999999998753111100
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccC
Q 000581 1237 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1316 (1408)
Q Consensus 1237 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~ 1316 (1408)
.|. .+.+.+||.+.+++++.|..++.+|++|+|+||++||||||||||++|||||. +|++||||||++|++++
T Consensus 173 ~~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~-~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 173 AFK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITE-TGNLFHIDFGHILGNYK 245 (365)
T ss_pred ccc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcC-CCCEEEEeeHHhhCCCC
Confidence 000 12578999999999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CC-C-CCCCCCcccccchhhcccccccc-----chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHH
Q 000581 1317 ML-K-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQ 1389 (1408)
Q Consensus 1317 ~l-~-~pE~VPFRLTrniv~~mG~~g~e-----G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~ 1389 (1408)
.+ . .||+||||||++|+++||+.|.+ +.|+.+|+.++.+||+|.+.|++++++|+...+++.+.. .+.+.-
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~--~~i~~l 323 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSK--EDIEYI 323 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcc--hHHHHH
Confidence 53 3 49999999999999999988766 469999999999999999999999999999999988743 357777
Q ss_pred HHHhhcCCCccc
Q 000581 1390 KAWKAQKMNTKG 1401 (1408)
Q Consensus 1390 ~~~~~~~~~~~~ 1401 (1408)
+++..+++++..
T Consensus 324 ~~~~~l~~se~e 335 (365)
T cd00894 324 RDALTVGKSEED 335 (365)
T ss_pred HHHhCCCCCHHH
Confidence 788888887653
No 25
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-49 Score=457.21 Aligned_cols=268 Identities=19% Similarity=0.282 Sum_probs=226.6
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHH
Q 000581 1083 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1159 (1408)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~l 1159 (1408)
+...+|++|.... .++ .+.++|++|+++|+++++.++| |+.|.+++|.| ||||||++++|++++||++
T Consensus 47 ~~~~lPl~p~~~~--------~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i 117 (353)
T cd05176 47 NKCRLPLSPSLVA--------KELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKI 117 (353)
T ss_pred CCCCCCCCcceeE--------ccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHH
Confidence 3466788874321 222 3568999999999999999999 99999999975 9999999999999999999
Q ss_pred HhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHH
Q 000581 1160 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1239 (1408)
Q Consensus 1160 L~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~ 1239 (1408)
|+++. .+|.+++|+|+|+++++|+||||||+.|+++|..... .... |.
T Consensus 118 ~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~----~~~~------------------------~~ 165 (353)
T cd05176 118 WLQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVEYG----VTGS------------------------FK 165 (353)
T ss_pred HHHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHhC----cCCc------------------------cc
Confidence 99865 6899999999999999999999999999999865311 0000 00
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC-
Q 000581 1240 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML- 1318 (1408)
Q Consensus 1240 ~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l- 1318 (1408)
...+.+|+...+|++..|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++.+
T Consensus 166 ------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g 238 (353)
T cd05176 166 ------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFG 238 (353)
T ss_pred ------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCcccc
Confidence 0136678888888899999999999999999999999999999999999999 59999999999999988753
Q ss_pred -CCCCCCCcccccchhhccccccc----cchhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHh
Q 000581 1319 -KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWK 1393 (1408)
Q Consensus 1319 -~~pE~VPFRLTrniv~~mG~~g~----eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~ 1393 (1408)
..||++|||||++|+++||..+. ...|+..|..++.+||+|.+.|++++++|+.-.+.+.+..+ +.++-+++.
T Consensus 239 ~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~--~i~~l~~r~ 316 (353)
T cd05176 239 SFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQ--DLKYVYDAL 316 (353)
T ss_pred CCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCch--HHHHHHHHh
Confidence 35899999999999999984221 13599999999999999999999999999999999998544 566777788
Q ss_pred hcCCCcc
Q 000581 1394 AQKMNTK 1400 (1408)
Q Consensus 1394 ~~~~~~~ 1400 (1408)
.+++++.
T Consensus 317 ~l~~sd~ 323 (353)
T cd05176 317 QPQTTDA 323 (353)
T ss_pred CCCCCHH
Confidence 8888764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=9.1e-50 Score=448.56 Aligned_cols=229 Identities=42% Similarity=0.772 Sum_probs=178.2
Q ss_pred EEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCC
Q 000581 1131 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1210 (1408)
Q Consensus 1131 ~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~ 1210 (1408)
.|+||+|+ +||+|||+|+||+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.||.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 49999995 59999999999999999999999987765 99999999999999999999999999999865433222
Q ss_pred CCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhh-hhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCC
Q 000581 1211 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1289 (1408)
Q Consensus 1211 ~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~-~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDR 1289 (1408)
...+.... .+...+...+.. ..+.+.++|.+.++++++|+.+|++|++|+|++|+++||||+|||
T Consensus 76 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDNPSRK--------------YKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccccccc--------------cccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 11111000 000012222333 344899999999999999999999999999999999999999999
Q ss_pred CCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcc----ccccccchhHHHHHHHHHHHhcCchHHHH
Q 000581 1290 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1365 (1408)
Q Consensus 1290 H~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~m----G~~g~eG~Fr~~c~~t~~~LR~~~~~l~~ 1365 (1408)
||+||||+..||+++|||||++|+ ++.++.||.||||||+||+++| |+.|++|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhccCCccccc
Q 000581 1366 IVEVFIHDPLYKWA 1379 (1408)
Q Consensus 1366 iLe~f~~Dpl~~W~ 1379 (1408)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999997
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=2.7e-48 Score=443.01 Aligned_cols=244 Identities=24% Similarity=0.342 Sum_probs=214.9
Q ss_pred cceEEEecCC-CcceEEEEEeCCCc-------------EEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccce
Q 000581 1107 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1172 (1408)
Q Consensus 1107 ~~~v~v~~s~-~~Pk~i~~~gsdG~-------------~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~ 1172 (1408)
.++++++.|+ ..|.++++...|+. .+.+++|.| ||||||++++|+|++||++|++.. ++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 4567999997 67999999988764 489999965 999999999999999999999764 7999
Q ss_pred eecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000581 1173 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1252 (1408)
Q Consensus 1173 i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1252 (1408)
+++|+|+|+++++|+||||+|+.|++++... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999886321 11247788
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC-CCCCCCCcccc
Q 000581 1253 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1329 (1408)
Q Consensus 1253 f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l-~~pE~VPFRLT 1329 (1408)
|.+.|.+ +..|..+|.+|++|+|+|||+|||||+||||++|||||. +|++||||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888875 479999999999999999999999999999999999997 9999999999999987542 35799999999
Q ss_pred cchhhccccccccc---hhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCCcc
Q 000581 1330 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMNTK 1400 (1408)
Q Consensus 1330 rniv~~mG~~g~eG---~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~~~ 1400 (1408)
++|+++||+.|.+| .|+..|..++.+||+|.+.|++++++|+..++.+++ .+++..-++++.+++++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~ 278 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSER 278 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHH
Confidence 99999999988665 677889999999999999999999999999999997 456777778888888764
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1.8e-46 Score=431.44 Aligned_cols=267 Identities=19% Similarity=0.305 Sum_probs=228.2
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCC--CcEEeeeeecCccchhhhHHHHHHHHHHHHHH
Q 000581 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1408)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL 1160 (1408)
+..+|++|... +.++ .++++|++|..+|.++++.++| |..|.+++|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 45678887532 3333 4568999999999999999999 89999999986 99999999999999999999
Q ss_pred hcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHH
Q 000581 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1408)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1240 (1408)
+++. .+|++++|+|+|+++++|+||||||+.|+++|.... |....+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9976 789999999999999999999999999999987531 1100000
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC--
Q 000581 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1318 (1408)
Q Consensus 1241 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l-- 1318 (1408)
...+.+||.+.+|++..|..+|.+|++|+|+||+++||||+||||++|||||+ +|++||||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~-~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKT-TGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcC-CCCEEEEeeHHhcCCCcccCC
Confidence 11377899899999999999999999999999999999999999999999995 9999999999999987543
Q ss_pred CCCCCCCcccccchhhcccccccc----chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhh
Q 000581 1319 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKA 1394 (1408)
Q Consensus 1319 ~~pE~VPFRLTrniv~~mG~~g~e----G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~ 1394 (1408)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||+|.+.|++++++|+.-.+.+.+. ...++..+++..
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~--~~~i~~l~~rf~ 318 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSD--LEDLKYVYDALR 318 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCc--chHHHHHHHHhC
Confidence 358999999999999999753332 25999999999999999999999999999988888875 346777778888
Q ss_pred cCCCcc
Q 000581 1395 QKMNTK 1400 (1408)
Q Consensus 1395 ~~~~~~ 1400 (1408)
+++++.
T Consensus 319 l~~se~ 324 (354)
T cd00895 319 PQDTEA 324 (354)
T ss_pred CCCCHH
Confidence 888764
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=9.2e-46 Score=425.67 Aligned_cols=268 Identities=21% Similarity=0.328 Sum_probs=223.4
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCCC------cEEeeeeecCccchhhhHHHHHHHHHH
Q 000581 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 1156 (1408)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG------~~y~~L~K~g~dDlRqD~r~~Qlf~li 1156 (1408)
...+|++|.. .+.++ .++++|++|+.+|.++++.++|| ..|.+++|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~--------~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAH--------QLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCce--------EEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 3557777743 23333 35789999999999999999998 4689999975 9999999999999999
Q ss_pred HHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHH
Q 000581 1157 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1236 (1408)
Q Consensus 1157 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1236 (1408)
|++|+++. .+|++++|+|+|+++++|+||||+|+.|+++|..+. |....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999875 789999999999999999999999999999986421 100000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccC
Q 000581 1237 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1316 (1408)
Q Consensus 1237 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~ 1316 (1408)
.| ..+.+++|+.+.++ .+.|..+|.+|++|+|+||++|||||+||||++|||||. +|++||||||++|+.++
T Consensus 173 ~~------~~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QF------NSHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred cc------CchhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 00 02356777777664 467889999999999999999999999999999999995 99999999999999886
Q ss_pred C-C-CCCCCCCcccccchhhccccc-----ccc--chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHH
Q 000581 1317 M-L-KTPERVPFRLTRDIIDGMGVT-----GVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQ 1387 (1408)
Q Consensus 1317 ~-l-~~pE~VPFRLTrniv~~mG~~-----g~e--G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~ 1387 (1408)
. + ..||+||||||++|+..||.- +.+ +.|+..|..++.+||+|.+.|+++++.|+.-.+.+.+..+ +.+
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~--~i~ 322 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFD--DIA 322 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcc--HHH
Confidence 4 4 469999999999999999742 223 5899999999999999999999999999999999998644 456
Q ss_pred HHHHHhhcCCCcc
Q 000581 1388 RQKAWKAQKMNTK 1400 (1408)
Q Consensus 1388 ~~~~~~~~~~~~~ 1400 (1408)
+.++++.+++++.
T Consensus 323 ~lr~rf~l~~sd~ 335 (366)
T cd05175 323 YIRKTLALDKTEQ 335 (366)
T ss_pred HHHHhcCCCCCHH
Confidence 7777888888874
No 30
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=360.45 Aligned_cols=433 Identities=21% Similarity=0.351 Sum_probs=303.0
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
.+|+..|++|+.+.+......+++++-=|=...- ++.|.......+.....-..+..++||+..++..
T Consensus 308 kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye 387 (843)
T KOG0906|consen 308 KKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYE 387 (843)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 4799999999999998766568888888876532 3456666666666666666777888888877754
Q ss_pred c----cc--------ccc---------------------------ccHHHHHHHHHHHHHHhCChhHH---HHHHHhhcC
Q 000581 963 K----DA--------LGL---------------------------HNFQFALVSLVKKMAIDHPYHTI---FQLLALANG 1000 (1408)
Q Consensus 963 ~----~~--------~~~---------------------------~~f~~~L~~Ll~ri~~~hP~~~l---y~l~~~~~s 1000 (1408)
+ .+ .+. +....-|..+|.+.+...|+-.= |.+ .+- .
T Consensus 388 ~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl-~~e-~ 465 (843)
T KOG0906|consen 388 NGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYL-KVE-I 465 (843)
T ss_pred hhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEE-EEE-e
Confidence 4 00 000 00011355666666666665321 111 100 0
Q ss_pred ccchhhcccccchhhhhhHH-HHHHHHHHHHHh--hHH---HHHHHHHHHHHHHHHHHhhhccccccc--cccc-chhhh
Q 000581 1001 DRIKDKQRSRNSFVVDMDKK-LAAENLLEELSS--YHG---AIIRQMKQMVDVYIKLAELETRREDTN--KRIQ-LPREI 1071 (1408)
Q Consensus 1001 ~~~~~~~~~~~~~~v~~~~~-~~a~~il~~l~~--~~~---~~~~~~~~l~~~~~~la~~~~~~~~~~--~~~~-l~~~l 1071 (1408)
++. .+ +.+. ......++.+++ ..+ ..+.+-..+++.+.++.+.. ++...+ +++. +...+
T Consensus 466 ---Ed~---~~-----~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v-~~~~g~~~kK~e~L~~lL 533 (843)
T KOG0906|consen 466 ---EDT---PY-----SKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEV-KRGSGRRKKKIERLRGLL 533 (843)
T ss_pred ---cCC---hH-----HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCchHHHHHHHHHHH
Confidence 000 00 0111 011122233332 111 23444566777777776542 122122 2221 11111
Q ss_pred hhccccccccccccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEeCCCc-EEeeeeecCccchhhhHHH
Q 000581 1072 RCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVM 1149 (1408)
Q Consensus 1072 ~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG~-~y~~L~K~g~dDlRqD~r~ 1149 (1408)
.....+.+..+-...+|++|+. .|.++ -++.++..|-..|-+|++...+|. +|+.++|.| ||||||+.+
T Consensus 534 ~~~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV 604 (843)
T KOG0906|consen 534 GDHKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLV 604 (843)
T ss_pred hcccccccccceeeccCCCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHH
Confidence 1111122233334456777743 34444 345688899999999999999998 999999987 999999999
Q ss_pred HHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhc
Q 000581 1150 EQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS 1229 (1408)
Q Consensus 1150 ~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1229 (1408)
.|++++|+.||++.+ .+|.+++|+|+|+++.-|++|+|++ .||..|+.....
T Consensus 605 ~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~----------------------- 656 (843)
T KOG0906|consen 605 LQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS----------------------- 656 (843)
T ss_pred HHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH-----------------------
Confidence 999999999999987 7899999999999999999999986 788888753110
Q ss_pred chHhHHHHHHHHHhhhhhhHHHHHHHHcCCc----hHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEE
Q 000581 1230 NVKDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVH 1305 (1408)
Q Consensus 1230 ~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~----~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvH 1305 (1408)
...|+.+..|+- ..=++.+.+|++|||+||+++||||+||||++|+|+.+ +|++||
T Consensus 657 -------------------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FH 716 (843)
T KOG0906|consen 657 -------------------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFH 716 (843)
T ss_pred -------------------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEE
Confidence 011122222221 23356788999999999999999999999999999997 999999
Q ss_pred eechhhhcccCCCCCCCCCCcccccchhhcccccccc--chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChH
Q 000581 1306 IDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPL 1383 (1408)
Q Consensus 1306 IDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~ 1383 (1408)
||||++||+. |.|-+.|..|++.||++||....+ ..|+..|..++..||++.+.|+++.++|...-+.+....|.
T Consensus 717 iDFgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~ 793 (843)
T KOG0906|consen 717 IDFGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPN 793 (843)
T ss_pred EeeeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcc
Confidence 9999999988 667788999999999999944432 36999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccc
Q 000581 1384 KALQRQKAWKAQKMNTKG 1401 (1408)
Q Consensus 1384 ~~~~~~~~~~~~~~~~~~ 1401 (1408)
++..+.++++.++|++.+
T Consensus 794 k~I~kvqeRfrLdmSde~ 811 (843)
T KOG0906|consen 794 KAILKVQERFRLDMSDEA 811 (843)
T ss_pred hhhHHHHHHHcccccHHH
Confidence 999999999999998764
No 31
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=369.60 Aligned_cols=435 Identities=18% Similarity=0.227 Sum_probs=317.2
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhhccC------------ChHHHHHHHHHhhcccCccchhhhhHHHhhhcCCCc
Q 000581 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1408)
Q Consensus 896 ~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~~ 963 (1408)
.|+---+.|....+.-..-++.-+|.=|--.. .+.+|.+...+.+.+++....+..+|||+..|.+..
T Consensus 858 ~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~ 937 (1639)
T KOG0905|consen 858 NALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL 937 (1639)
T ss_pred chhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 35555555655555545555777777775443 456788888999999999999999999999999753
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh--hHHHHHHHhhcCccchhhcccccchhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q 000581 964 DALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQM 1041 (1408)
Q Consensus 964 ~~~~~~~f~~~L~~Ll~ri~~~hP~--~~ly~l~~~~~s~~~~~~~~~~~~~~v~~~~~~~a~~il~~l~~~~~~~~~~~ 1041 (1408)
...+.|.++|...+...++ |-+|+++.-...+ .....+...+ .+| ++....+...+-+.--
T Consensus 938 ------yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d---~qfs~rYq~l------l~a--Ll~~~gk~L~~ef~~Q 1000 (1639)
T KOG0905|consen 938 ------YLKSALVQFLLSRSLVSLQFAHELYWLLKDALDD---SQFSLRYQNL------LAA--LLDCCGKNLREEFKKQ 1000 (1639)
T ss_pred ------hccCHHHHHHHHHHhcchHHHHHHHHHHhhcccc---ceeehHHHHH------HHH--HHHHhCHHHHHHHHHH
Confidence 3346788888888888777 4455554322111 0011122111 111 1111111111222334
Q ss_pred HHHHHHHHHHHhhhcccccccccccchhhhhhccccccccccccccCCCCCCcccCCCccccccccceEEEecCCCcceE
Q 000581 1042 KQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKV 1121 (1408)
Q Consensus 1042 ~~l~~~~~~la~~~~~~~~~~~~~~l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~v~v~~s~~~Pk~ 1121 (1408)
.+|++++..+|+-........+...+.+.+..+.+. ++-.+|..||+.|.-.... +. ...+.+.+|...|-+
T Consensus 1001 ~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~vkG---v~----i~~CSyFnSNA~PLK 1072 (1639)
T KOG0905|consen 1001 HKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDVKG---VR----IRECSYFNSNALPLK 1072 (1639)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCceecccCchheecc---cc----ccccccccCCCcceE
Confidence 578888888886432211122222233333333221 2333566777776432211 11 235778899999999
Q ss_pred EEEEe--CCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHH
Q 000581 1122 VECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGD 1199 (1408)
Q Consensus 1122 i~~~g--sdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~ 1199 (1408)
|+|+| -+|..++.++|.| ||||||+.++|++++||++|.+++ .+|.+.+|+++|.+-+.|++|-|||+.||+.
T Consensus 1073 itFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~TLrK 1147 (1639)
T KOG0905|consen 1073 ITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAETLRK 1147 (1639)
T ss_pred EEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHHHHHH
Confidence 99999 7799999999986 999999999999999999999987 7999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhccc
Q 000581 1200 YLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASS 1278 (1408)
Q Consensus 1200 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S 1278 (1408)
|-..+. ...- |.. .+.+|+++.-|++.++-.+-.||+.|||++|
T Consensus 1148 IQve~G----ltGs-------------------------------fkD~pla~WL~KhNp~e~eYekA~eNFiySCAG~c 1192 (1639)
T KOG0905|consen 1148 IQVEEG----LTGS-------------------------------FKDRPLAKWLMKHNPSEFEYEKAVENFIYSCAGWC 1192 (1639)
T ss_pred HHHHhc----cccc-------------------------------cccchHHHHHHhcCCCHHHHHHHHHHHHHhcccce
Confidence 865422 1110 111 4789999999999999999999999999999
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC--CCCCCCCcccccchhhccccccc----cchhHHHHHHH
Q 000581 1279 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKT 1352 (1408)
Q Consensus 1279 ~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l--~~pE~VPFRLTrniv~~mG~~g~----eG~Fr~~c~~t 1352 (1408)
+++||||++|||.+||||.+ ||++||||||-..|...++ -...++||-||.+|...+..-+- ...|...|..+
T Consensus 1193 VaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrA 1271 (1639)
T KOG0905|consen 1193 VATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRA 1271 (1639)
T ss_pred eeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999996 9999999999999887654 35799999999999999874332 35799999999
Q ss_pred HHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCC
Q 000581 1353 LSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMN 1398 (1408)
Q Consensus 1353 ~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~ 1398 (1408)
+..+|+|.+.|+++|..|+...+..-+. ..+++...+...|.-+
T Consensus 1272 yNiiRK~t~lllnlL~lM~~agiPeln~--i~dLkYV~~aL~pq~t 1315 (1639)
T KOG0905|consen 1272 YNIIRKNTNLLLNLLRLMACAGIPELNS--IQDLKYVYNALRPQDT 1315 (1639)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCccc--hhhHHHHHhhcCcccC
Confidence 9999999999999999999999998753 4567776666655444
No 32
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=346.03 Aligned_cols=434 Identities=21% Similarity=0.288 Sum_probs=306.0
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccC------------ChHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
..++--.+.|+.+++--+.-.+.-||.-|=..+ .++.|.+...+.+..+....++..+-||+.-|.+.
T Consensus 578 Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE 657 (1076)
T KOG0904|consen 578 PEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE 657 (1076)
T ss_pred hHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc
Confidence 456666688888877655555777777775543 34567777788889999999999999999999984
Q ss_pred ccccccccHHHHHHHHHHHHHHhCC---hhHHHHHHHhhcCccchhhcccccchhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 000581 963 KDALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 1039 (1408)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~hP---~~~ly~l~~~~~s~~~~~~~~~~~~~~v~~~~~~~a~~il~~l~~~~~~~~~ 1039 (1408)
+..++.|..+|.+.|...- |..+|.|.+-..... . +.|. ..||+.-.+-+...++
T Consensus 658 ------pylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~----~---------~~Rf---gllLEaYlRGc~~hlk 715 (1076)
T KOG0904|consen 658 ------PYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPS----V---------QQRF---GLLLEAYLRGCTHHLK 715 (1076)
T ss_pred ------chhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHH----H---------HHHH---HHHHHHHHhccHHHHH
Confidence 4567788888877776543 346787766432110 0 0111 1233322211112222
Q ss_pred HHHHHHHH---HHHHHhh---hccccccccccc-chhhhhhccccccccccccccCCCCCCcccCCCccccccccceEEE
Q 000581 1040 QMKQMVDV---YIKLAEL---ETRREDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMV 1112 (1408)
Q Consensus 1040 ~~~~l~~~---~~~la~~---~~~~~~~~~~~~-l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~v~v 1112 (1408)
.+.+-+++ +.++..+ ...+++..+.+. +...++.....+. +..+.-|++|.... |. . ..++++|
T Consensus 716 ~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~--lq~l~sPLdP~~~l--ge-l----~iekckv 786 (1076)
T KOG0904|consen 716 VLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEA--LQNLQSPLDPSLKL--GE-L----IIEKCKV 786 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHH--HHhccCCCChhhhh--cc-h----hhhhhhh
Confidence 22222222 3322221 111111111011 1011111111110 01223466663222 11 1 2467899
Q ss_pred ecCCCcceEEEEE----eCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceE
Q 000581 1113 MNGINAPKVVECF----GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1188 (1408)
Q Consensus 1113 ~~s~~~Pk~i~~~----gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlI 1188 (1408)
|+|+.+|--+.+- |+++ .-..+||.| ||||||..+.|+.++|+.+|+.+. .+|.+.+|.++|++...|+|
T Consensus 787 M~SkkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlI 860 (1076)
T KOG0904|consen 787 MDSKKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLI 860 (1076)
T ss_pred hhccCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeE
Confidence 9999999998875 3444 567899997 999999999999999999999887 78999999999999999999
Q ss_pred EEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHH
Q 000581 1189 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKR 1267 (1408)
Q Consensus 1189 E~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R 1267 (1408)
|.|+|+.|+.+|-.+..... + ..-|.+ .|.+|+-+..|..+..=.+-
T Consensus 861 EVV~~s~TIa~IQ~~~g~~~-a-------------------------------t~afn~~~L~~WLKekNp~e~kld~AI 908 (1076)
T KOG0904|consen 861 EVVRNSETIANIQLNTGNMA-A-------------------------------TAAFNKDALLNWLKEKNPGEDKLDAAI 908 (1076)
T ss_pred EEecCchhhhhhhhccccce-e-------------------------------eccCCHHHHHHHHhhcCchHHHHHHHH
Confidence 99999999999764311100 0 011223 68888877777666677888
Q ss_pred HHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCC-CC-CCCCCCcccccchhhcccccccc---
Q 000581 1268 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIIDGMGVTGVE--- 1342 (1408)
Q Consensus 1268 ~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~-l~-~pE~VPFRLTrniv~~mG~~g~e--- 1342 (1408)
..||.|||+||+++||||+||||.+|||+.+ ||++||||||.++|.++. |- ..|+|||-||++++..|+-.+..
T Consensus 909 e~Ft~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~ 987 (1076)
T KOG0904|consen 909 EEFTLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSE 987 (1076)
T ss_pred HHHHHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCch
Confidence 9999999999999999999999999999996 999999999999998864 43 48999999999999999865442
Q ss_pred ---chhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCCcc
Q 000581 1343 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMNTK 1400 (1408)
Q Consensus 1343 ---G~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~~~ 1400 (1408)
+-|+.+|+.++.+||+|.+.++++...|+--.|++-+ -.+++...+++...|.+..
T Consensus 988 ~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs--s~~Di~ylrdtL~l~ktEE 1046 (1076)
T KOG0904|consen 988 KEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS--SKKDIDYLRDTLALGKTEE 1046 (1076)
T ss_pred hHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc--cHHHHHHHHHHHhcCCcHH
Confidence 5799999999999999999999999999999999875 4678888888888887743
No 33
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=4.1e-34 Score=339.64 Aligned_cols=317 Identities=29% Similarity=0.396 Sum_probs=253.9
Q ss_pred HHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000581 509 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 588 (1408)
Q Consensus 509 ~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~ES~~~ 588 (1408)
+|+++|||||+|+||.+..+... . .....+..+|+++.++++|+++.|...|+++|..++.++++++.+||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~--~-----~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQ--S-----NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhh--c-----cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 58999999999999987654321 1 1122267789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Q 000581 589 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 668 (1408)
Q Consensus 589 ~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~epil~~R~~ 668 (1408)
+|+.+++||+|.|||+++++..... . ....+..+.+.|++|++.+++++++|+||+++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~---------------~----~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLS---------------Q----NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc---------------c----cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999999998642221 0 13457789999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000581 669 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1408)
Q Consensus 669 vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i 748 (1408)
+++++...++...+|+++|++|||+|++++|.++|.++..+....... .| .+.+|+||++|++|++..|+..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-~~---~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-LP---RVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-Cc---chHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999777788899999999999999999999999999876553211111 12 35789999999999999999999887
Q ss_pred Hhh-ccC------------------------------CCchhHHHHHHhHHHHhh----hcCChHHHHHHhhcccccccc
Q 000581 749 SEN-YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 793 (1408)
Q Consensus 749 ~~~-~~~------------------------------~~~~a~l~~llG~wlaet----~~e~~~~I~~~Y~~~a~~~~~ 793 (1408)
+.+ ... ....++++.++|+|+.+. ...+.+++++.|.+ |+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 111 123468899999999999 78889999988887 53332
Q ss_pred ccccchhHHHHHhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHHHH
Q 000581 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1408)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~ 873 (1408)
....++++++|.|+|..+..... + ....
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~----~--------------------------~~~~------------ 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPR----E--------------------------KEES------------ 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhh----c--------------------------cccc------------
Confidence 22457899999999998754210 0 0000
Q ss_pred HHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHH
Q 000581 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 921 (1408)
Q Consensus 874 ~~~~lD~~e~~~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~Rlls 921 (1408)
. +..+..|+..||+||++|+.+|+++..+++|||||
T Consensus 317 -----~-------~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 -----S-------QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred -----c-------hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 0 02345899999999999999999999999999986
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=305.02 Aligned_cols=436 Identities=18% Similarity=0.233 Sum_probs=275.2
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhhccCC--------------------------------hHHHHHHHHHhhccc
Q 000581 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS--------------------------------RQNVIKNMVDTIDEV 943 (1408)
Q Consensus 896 ~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~--------------------------------~~~v~~~~~~~l~~v 943 (1408)
+++..+..-+...+..+.-.+++.+.+.+.... ++.+.....+.+.+.
T Consensus 1284 ~~~~~~~~~~v~~~~~~~~~i~~al~~~~~~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~ 1363 (1803)
T KOG0902|consen 1284 PSLKEEVTRLVRFDPADLVHIPEALKLFVTQKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSY 1363 (1803)
T ss_pred hhhhHHhhHHhhcChhhhhccHHHHHHHhccCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhC
Confidence 345666666666666666667777777776521 122344455677888
Q ss_pred CccchhhhhHHHhhhcCCCccccccccHHHHHHHHHHHHHH---hCChhHHHHHHHhhcCccchhhcccccchhhhhhHH
Q 000581 944 QSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAI---DHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKK 1020 (1408)
Q Consensus 944 Ps~kfl~~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~---~hP~~~ly~l~~~~~s~~~~~~~~~~~~~~v~~~~~ 1020 (1408)
|...-+..+||++..|....- --+..++.+.+. -.-||.+|.+.+-.-. ++...... .+...-.
T Consensus 1364 ~~~~~~fyvPQiVq~lryDkm--------~~v~~~il~~a~~s~l~aHqliWnm~~n~y~---d~~~~~~~--~~~~~l~ 1430 (1803)
T KOG0902|consen 1364 SPNEMLFYVPQIVQALRYDKM--------GYVEEYILWAAGKSQLFAHQLIWNMKANLYV---DEEAIVKA--DIGEILD 1430 (1803)
T ss_pred ChhhhhhhhHHHHHHHhhcch--------hHHHHHHHHHhhhhHHHHHHHHHHhhhhhcc---ccccccch--hHHHHHH
Confidence 888889999999999987421 124444444432 3566788888643211 11110000 0000011
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hcccccccccccchhhhhhccccccccccccccCCCCCCcccCC-
Q 000581 1021 LAAENLLEELSSYHGAIIRQMKQMVDVYIKLAEL-ETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEG- 1098 (1408)
Q Consensus 1021 ~~a~~il~~l~~~~~~~~~~~~~l~~~~~~la~~-~~~~~~~~~~~~l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~- 1098 (1408)
...+.|++.++.....+...=..+++.+..+... .+-.....|+-.+.+.+.+++--..+++|+..-.+-...+|..|
T Consensus 1431 ~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~kik~~~~~YlPs~P~~~v~~i~~~Sg~ 1510 (1803)
T KOG0902|consen 1431 RVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKIKVQPGCYLPSNPDAVVLDIDYKSGT 1510 (1803)
T ss_pred HHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhhcccCceecCCCCCceEEEeecCCCc
Confidence 1223344444332333333334455544444321 10000011121222333332211123333321111112223222
Q ss_pred ------CccccccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccce
Q 000581 1099 ------SFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1172 (1408)
Q Consensus 1099 ------~~~~i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~ 1172 (1408)
..|++..|.-+-....|.+.- ..+.--+...-++|.| ||.|||....|+++++..+++.-. .++.
T Consensus 1511 plQS~aK~PfmatF~vkr~~~~g~~~~----~k~~~~~WQa~IFKvG-DDcRQD~LaLQiislf~~if~~~g----Ld~~ 1581 (1803)
T KOG0902|consen 1511 PLQSAAKAPFMATFKVKRLEKDGLQCR----SKSQKISWQAAIFKVG-DDCRQDMLALQIISLFKNIFQLVG----LDLY 1581 (1803)
T ss_pred cchhhccCCeeEEEeeeeccCCccccc----ccccchhhhhhhhhcC-chHHHHHHHHHHHHHHHHHHHHcC----CceE
Confidence 134333321110001111100 0000001123589987 999999999999999999999866 7899
Q ss_pred eecceEEEcCCCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000581 1173 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1252 (1408)
Q Consensus 1173 i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1252 (1408)
+-+|+|+|.+|.||+||.|||+.+=..+ |... ..=|++|
T Consensus 1582 lfPYrV~aT~pGcGVIEviPn~~SRdql--------Gr~t---------------------------------~~glyey 1620 (1803)
T KOG0902|consen 1582 LFPYRVVATAPGCGVIEVIPNSKSRDQL--------GRET---------------------------------DNGLYEY 1620 (1803)
T ss_pred EeeeeeeccCCCCceEEeCCCCccHHHh--------cccc---------------------------------cccHHHH
Confidence 9999999999999999999999885442 1000 0126677
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC-CCCCCCCcccc
Q 000581 1253 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1329 (1408)
Q Consensus 1253 f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l-~~pE~VPFRLT 1329 (1408)
|...|.+ +..+.++|.||.+|+|+||+++|.|.+.|||++|||||. -|+++|||||++||..+.- -.-|. ||+||
T Consensus 1621 F~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~iHIDFGf~~e~sPGgnl~fE~-~fKLt 1698 (1803)
T KOG0902|consen 1621 FTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHIIHIDFGFMFESSPGGNLGFEP-PFKLT 1698 (1803)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCEEEEeeeeEEecCCCCccCcCC-Cccch
Confidence 8888864 679999999999999999999999999999999999995 8999999999999977642 34466 99999
Q ss_pred cchhhcccccccc-c----hhHHHHHHHHHHHhcCchHHHHHHHHhccCCccccccChHHHHHHHHHHhhcCCCccc
Q 000581 1330 RDIIDGMGVTGVE-G----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKAWKAQKMNTKG 1401 (1408)
Q Consensus 1330 rniv~~mG~~g~e-G----~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~~~~~~~~~~~~~~~~~~~~~~ 1401 (1408)
.+|+..|| |+. + -|...|.+.+-+.|.+.+.|.+.++.|+...|++++-. ...+-..+++|.||+..
T Consensus 1699 ~Em~~~mg--G~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~---~i~nl~~RF~pemsere 1770 (1803)
T KOG0902|consen 1699 KEMVMLMG--GKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQ---TIGNLRARFAPEMSERE 1770 (1803)
T ss_pred HHHHHHhC--CCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcc---hHHHHHHhhCcccchHH
Confidence 99999999 443 3 58999999999999999999999999999999999765 45566788999998753
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.6e-28 Score=288.75 Aligned_cols=225 Identities=21% Similarity=0.340 Sum_probs=196.8
Q ss_pred CCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcccC
Q 000581 1128 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1207 (1408)
Q Consensus 1128 dG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~ 1207 (1408)
+......++|.| |||||+....||+..+-.+|.+.+ -.|+||+|+|+-+|.++||||-|+|+.++|.|=..
T Consensus 584 nWdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~---- 654 (847)
T KOG0903|consen 584 NWDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKR---- 654 (847)
T ss_pred CcceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHh----
Confidence 345677899987 999999999999999999999987 68999999999999999999999999999996321
Q ss_pred CCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC-CchHHHHHHHHHHHhhhccchhhheecc
Q 000581 1208 GGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL-QPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1408)
Q Consensus 1208 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~-~~~~w~~~R~~ft~S~A~~S~vgyiLgL 1286 (1408)
+ ++ .-.|++||...++ +...+-.+.+||..|+|+||+|+|+|.+
T Consensus 655 ------l-~~----------------------------~~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQv 699 (847)
T KOG0903|consen 655 ------L-PN----------------------------LASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQV 699 (847)
T ss_pred ------c-ch----------------------------hhhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 0025566666553 6789999999999999999999999999
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccccccccc----hhHHHHHHHHHHHhcCchH
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEA 1362 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~c~~t~~~LR~~~~~ 1362 (1408)
.|||+.|||||. -|+++|||||+.....+..---|..||+||.++++.|| |++| .|+..|-..+..+|+|.+.
T Consensus 700 KDRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadr 776 (847)
T KOG0903|consen 700 KDRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADR 776 (847)
T ss_pred ccccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 89999999999999988876789999999999999999 8887 5899999999999999999
Q ss_pred HHHHHHHhccC-CccccccChHHHHHHHHHHhhcCCCcc
Q 000581 1363 LLTIVEVFIHD-PLYKWALSPLKALQRQKAWKAQKMNTK 1400 (1408)
Q Consensus 1363 l~~iLe~f~~D-pl~~W~~~~~~~~~~~~~~~~~~~~~~ 1400 (1408)
|..++|+|-.+ -+.|+.- ..+..++.++++...++++
T Consensus 777 Iv~lvEiMq~~S~~pCF~a-G~~Ti~nL~~RFhLslTEe 814 (847)
T KOG0903|consen 777 IVLLVEIMQDGSGMPCFRA-GERTIQNLRQRFHLSLTEE 814 (847)
T ss_pred HHHHHHHhhccCCCccccc-ChHHHHHHHHHhcccccHH
Confidence 99999999994 7778874 4567888899999988865
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.92 E-value=1.9e-25 Score=262.31 Aligned_cols=164 Identities=20% Similarity=0.345 Sum_probs=136.0
Q ss_pred CcceEEEEEeCCCcE-----------EeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCc
Q 000581 1117 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1185 (1408)
Q Consensus 1117 ~~Pk~i~~~gsdG~~-----------y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~ 1185 (1408)
.+|.-+.+...+|.. |.+|+|. +|||||+.|.|++++|+.||+++. .+|.+.+|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 478888888888887 9999995 799999999999999999999987 79999999999999999
Q ss_pred ceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHH
Q 000581 1186 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1265 (1408)
Q Consensus 1186 GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~ 1265 (1408)
|+||+|++. +|.+|... . +.+||. +.++.
T Consensus 1100 GLIEfVps~-tLAsI~~~--------------------------------~------------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM--------------------------------D------------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh--------------------------------H------------HHHHHH--hcCcH----
Confidence 999999974 56654311 0 122222 12222
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhcccc
Q 000581 1266 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1338 (1408)
Q Consensus 1266 ~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~ 1338 (1408)
...||++|+|.||+++||||+||||++|||||. +|++||||||++|+....-+.+-+.|.|+-.+|..++|.
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~ 1200 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQ 1200 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHH
Confidence 256999999999999999999999999999996 999999999999987755556677799999998876654
No 37
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=4e-08 Score=132.72 Aligned_cols=249 Identities=7% Similarity=-0.147 Sum_probs=178.9
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcC
Q 000581 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1408)
Q Consensus 1103 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1408)
+.+|.+. -..+...++..+..++++...+...| +.+++|+++.+++. +...++.|++.|-..+|+++++.
T Consensus 2164 ~akysd~--~~~~~~~~~~sse~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~ 2233 (2806)
T KOG0892|consen 2164 LAKYSDP--DYQEDEERRSSSEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSED 2233 (2806)
T ss_pred HHhccCc--hhhhHHHHHhHHHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHH
Confidence 4444442 23567888899999999988777666 67999999988886 33334455678899999999999
Q ss_pred CCcceEEEcCCCCchHHHhhhcccCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHH---HcCC
Q 000581 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE---RFLQ 1259 (1408)
Q Consensus 1183 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~---~f~~ 1259 (1408)
...+|-+|+.|.......-.+. +.+++.|+.+..+....|.+.+... |.+++..=+.+|.|++.++.-+ .+.+
T Consensus 2234 r~~fL~~Alt~Yl~cl~~~~~~--D~~~i~R~cslWfsns~~~evn~~m--k~~i~~ipsyKFip~~yQlAaRl~~~~~~ 2309 (2806)
T KOG0892|consen 2234 RSKFLTLALTNYLNCLSESDEY--DVDLIFRCCSLWFSNSHLKEVNNSL--KHEIQTVPSYKFIPLVYQLAARLGNSENN 2309 (2806)
T ss_pred HHHHHHHHHHhHHHHHhhcccc--cHHHHHHHhhhhccccchHHHHHHH--HHHhccCCcchhHHHHHHHHHHhccccCc
Confidence 9999999999977665432210 1112333333333333332222211 2223322245778877665422 4567
Q ss_pred chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccccc
Q 000581 1260 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1339 (1408)
Q Consensus 1260 ~~~w~~~R~~ft~S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~ 1339 (1408)
+-.|...++.|..+.+.-.-.+|+|+.+++|--|. .-+-+|.+ | ++.++++|++|+...++++++.
T Consensus 2310 ~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~ 2375 (2806)
T KOG0892|consen 2310 SFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGN 2375 (2806)
T ss_pred hHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchh
Confidence 88999999999999999999999999998887661 11223333 2 6789999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhcCchHHHHHHHHhccCCcccccc
Q 000581 1340 GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1408)
Q Consensus 1340 g~eG~Fr~~c~~t~~~LR~~~~~l~~iLe~f~~Dpl~~W~~ 1380 (1408)
++.++++.||..++-+. -......++.+....++...|..
T Consensus 2376 ~v~~v~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K 2415 (2806)
T KOG0892|consen 2376 MVRQLECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLK 2415 (2806)
T ss_pred HHHHHHHHHHHHHHHhc-CcccccchhhhhhcCccccHHHh
Confidence 99999999999999888 66777888999889999888864
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.40 E-value=0.6 Score=62.07 Aligned_cols=60 Identities=17% Similarity=-0.079 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000581 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1408)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~ 749 (1408)
.|...+.+....|++..|...+.++-.+. |.+..+.+..|..+|+.|+...|+.+++.++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34455666777777777777665553321 1122234556777777777777777766554
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.51 E-value=17 Score=50.08 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhcCCchhhhhhhhc----------cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCC
Q 000581 380 PRHIEILVSAVTQINEPDSLYGIIQS----------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSP 449 (1408)
Q Consensus 380 ~~~~e~L~~Iy~~IdePD~~yGi~~~----------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~ 449 (1408)
...+..|+..|.+.++.|.+..+... .+....|.-|-+.|++++|+..|+.-.+.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-------------- 537 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-------------- 537 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--------------
Confidence 34567888888888888888777541 123467788888888888888888765532
Q ss_pred CCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhh
Q 000581 450 HGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 493 (1408)
Q Consensus 450 ~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~ 493 (1408)
..|+ ...+..+++++...|..+......+
T Consensus 538 -v~PD--------------~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 538 -VKPD--------------RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred -CCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2244 1235678888888887665544333
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.47 E-value=36 Score=45.21 Aligned_cols=67 Identities=18% Similarity=0.008 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~ 753 (1408)
....|...+.+..+.|+++.|...+..+.... +.+.......+.++...|+...|+..++..+...+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 34567777788888888888887766654321 11112234567778888888888887777665543
No 41
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=92.09 E-value=0.61 Score=50.83 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
..|+.-|++|+..++......+..++.-|-..+. ++.|.....+.+.+.|...++..+||||..|...
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 5688899999999998877778999999976542 4567777788999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHH
Q 000581 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1408)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~l~~ 996 (1408)
. .....|..+|.+.|...|. +.+|.|.+
T Consensus 123 ~------~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~ 153 (184)
T smart00145 123 P------YLDSALARFLLERALKNQRLGHFFYWYLKS 153 (184)
T ss_pred c------ccccHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2 1125799999999998886 44565544
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.96 E-value=20 Score=47.40 Aligned_cols=290 Identities=11% Similarity=0.058 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhcCCchhhhhhhhc------cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCC
Q 000581 381 RHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 454 (1408)
Q Consensus 381 ~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~ 454 (1408)
.....|++.|.+.++.|.+..+... .+.+..+.-|.+.|++++|+..|+.-.+.+ ..|+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd 324 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID 324 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC
Confidence 3467899999999999999998752 134678899999999999999998765532 2244
Q ss_pred cCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCC
Q 000581 455 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP 534 (1408)
Q Consensus 455 ~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~ 534 (1408)
...+..+++++-.+|..+......+.+.... ...+....-.-..+--+.|+++......... .
T Consensus 325 --------------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~ 387 (697)
T PLN03081 325 --------------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVFDRM-P 387 (697)
T ss_pred --------------HHHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-C
Confidence 1135678888888887665433222222111 1111111112233444556655433221110 0
Q ss_pred CCcCcccchhhhhHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HhHHhHHHHHHHhhhhc
Q 000581 535 SGQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKS 612 (1408)
Q Consensus 535 ~~~~~~~~~f~~~L~~aL~al-~~~d~~~~~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELeei~~i~~~~ 612 (1408)
.++...|+.. +.+. ++|+.+++.+..+..... .+ .--...|..++. +-....+++..++....
T Consensus 388 ---~~d~~t~n~l----I~~y~~~G~~~~A~~lf~~M~~~---g~-----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 388 ---RKNLISWNAL----IAGYGNHGRGTKAVEMFERMIAE---GV-----APNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred ---CCCeeeHHHH----HHHHHHcCCHHHHHHHHHHHHHh---CC-----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1233445432 2222 668888888888765432 11 101111333332 11112222222221111
Q ss_pred cCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Q 000581 613 SGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRK 692 (1408)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~epil~~R~~vl~il~~~~~~~~~wl~~a~laRk 692 (1408)
... ..+.|... .+...+...-..-.+-| ....+-. .+. .....+|-.....|++
T Consensus 453 ~~~-------------~g~~p~~~-------~y~~li~~l~r~G~~~e----A~~~~~~-~~~-~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 453 SEN-------------HRIKPRAM-------HYACMIELLGREGLLDE----AYAMIRR-APF-KPTVNMWAALLTACRI 506 (697)
T ss_pred HHh-------------cCCCCCcc-------chHhHHHHHHhcCCHHH----HHHHHHH-CCC-CCCHHHHHHHHHHHHH
Confidence 000 00000100 11111111111000001 1111111 111 1134567777889999
Q ss_pred cCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 000581 693 GFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1408)
Q Consensus 693 ag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~ 751 (1408)
.|+++.|..+..++..+... +.....-.++.+=..|+.++|.++.+.+...
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~--------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC--------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999887766443211 1111223567777889999999888777654
No 43
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.65 E-value=30 Score=45.49 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~ 753 (1408)
....|...+.++.+.|+++.|...+.++..+. |....+..-.+.++...|+.+.|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 45667778999999999999999887765442 11222345678999999999999999888776544
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.26 E-value=57 Score=45.95 Aligned_cols=84 Identities=18% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCC--
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNE-- 756 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~-- 756 (1408)
....++..+.+..+.|++..|...+..+.... |.+.......|.++-..|+.++|+..++.++...+...
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLAKLPATA--------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 35567888899999999999999887653321 11222344567777789999999999988876543221
Q ss_pred -chhHHHHHHhHHHH
Q 000581 757 -EAPDVYRLVGKWLA 770 (1408)
Q Consensus 757 -~~a~l~~llG~wla 770 (1408)
..+.++..+|+...
T Consensus 708 ~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 708 MESALVLRDAARFEA 722 (1157)
T ss_pred hhhHHHHHHHHHHHH
Confidence 12344444454443
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=91.06 E-value=20 Score=49.52 Aligned_cols=299 Identities=11% Similarity=0.106 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc--------
Q 000581 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------- 405 (1408)
Q Consensus 334 d~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-------- 405 (1408)
-|..+..+..+||.+..|+-.++.-... + ..+.......|+..|.+.++.|.+..+...
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~--G-----------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNA--G-----------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHc--C-----------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 3678888889999999999877753211 0 122345678999999999999999887531
Q ss_pred --cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000581 406 --HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1408)
Q Consensus 406 --~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1408)
......+.-|-+.|++++|+..|+.-...... ..|+ ...+.-++.++...|
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~G 593 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANAG 593 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHCC
Confidence 13457889999999999999999886552110 2244 113567888999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHH-HhcCChHH
Q 000581 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTA-LREGDSEE 562 (1408)
Q Consensus 484 ~~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~a-l~~~d~~~ 562 (1408)
.++......+.+..... .......-....+-=+.|+++............+..++...|+.. +.+ .+.|+.+.
T Consensus 594 ~ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL----I~a~~k~G~~ee 667 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL----VDVAGHAGDLDK 667 (1060)
T ss_pred CHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhCCCHHH
Confidence 87766544444433211 111111222233444567766443321111111112333344322 222 25688888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHH
Q 000581 563 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1408)
Q Consensus 563 ~~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1408)
+.+.++..+.. .+ ......|..+=....+...+.+-.++.+ .+... + ..| + .
T Consensus 668 A~~l~~eM~k~---G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~---eM~~~--------g---~~P---d-------v 719 (1060)
T PLN03218 668 AFEILQDARKQ---GI-KLGTVSYSSLMGACSNAKNWKKALELYE---DIKSI--------K---LRP---T-------V 719 (1060)
T ss_pred HHHHHHHHHHc---CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHc--------C---CCC---C-------H
Confidence 88877765432 11 1112233333233333333333333332 11000 0 011 1 1
Q ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000581 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1408)
Q Consensus 643 ~~W~~rl~~~q~~~~~~epil~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1408)
.+|...+...-..-.+.+.+--++...-.=+.+...+...+ -..|.+.|+++.|...+.++...
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL---L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHc
Confidence 35776666654333333332223322111011233333443 36788899999999988877543
No 46
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=90.63 E-value=0.46 Score=51.08 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
..|+..+++|+...+......+..++.-|-..+. ++.|.+...+.++++|...+...+||||..|...
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 5789999999999998888788999999976642 3567778889999999999999999999999985
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh
Q 000581 963 KDALGLHNFQFALVSLVKKMAIDHPY 988 (1408)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~hP~ 988 (1408)
.. ..+.|..+|.+.+...|.
T Consensus 118 ~~------~ds~La~FLl~Ral~n~~ 137 (171)
T cd00872 118 PY------HDSDLVRFLLKRALRNQR 137 (171)
T ss_pred cc------cCCHHHHHHHHHHhcCHH
Confidence 31 225799999999999885
No 47
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=89.74 E-value=0.74 Score=49.35 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
..|+.-|++|+.+.+......+..++.-|-..+. +..|.+...+.+...+...++..+|||+..|...
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999888777678899999976653 3457778889999999999999999999999986
Q ss_pred ccc-cccccHHHHHHHHHHHHHHhCCh
Q 000581 963 KDA-LGLHNFQFALVSLVKKMAIDHPY 988 (1408)
Q Consensus 963 ~~~-~~~~~f~~~L~~Ll~ri~~~hP~ 988 (1408)
... .+.......|..+|.+.|...|.
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ 151 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPK 151 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHH
Confidence 420 00001336799999999998886
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.07 E-value=45 Score=40.95 Aligned_cols=58 Identities=14% Similarity=-0.075 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 000581 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1408)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~ 747 (1408)
...+-.+++|...|.+..|...+..+..+. |.. ...++.|.+++..|+++.|.++-+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~-------P~~--~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQR-------PDA--YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344667899999999999999987764331 111 2236899999999999999886653
No 49
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=88.88 E-value=1.2 Score=47.20 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhhccC------------ChHHHHHHHHHhhcccCccchhhhhHHHhhhcCCCc
Q 000581 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1408)
Q Consensus 896 ~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~~ 963 (1408)
.++.-+++|+...+......+..++.-|=..+ .+..|.....+.+.+.|.......+|||+..|....
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 67888899999888777777888888886554 235677778899999999999999999999998753
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh
Q 000581 964 DALGLHNFQFALVSLVKKMAIDHPY 988 (1408)
Q Consensus 964 ~~~~~~~f~~~L~~Ll~ri~~~hP~ 988 (1408)
. ....|..+|.+.|...|.
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~ 137 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQR 137 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHH
Confidence 1 125799999999999985
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.93 E-value=1e+02 Score=40.54 Aligned_cols=65 Identities=15% Similarity=-0.056 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000581 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1408)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~ 753 (1408)
..+...+....+.|++..|...+.++... + |.+.....-.+..+...|+.+.|+..++..+...+
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~--~------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE--K------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 34556688999999999999988765432 1 11112223357889999999999999988776543
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=87.92 E-value=27 Score=46.17 Aligned_cols=285 Identities=12% Similarity=0.056 Sum_probs=156.4
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc---------
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 405 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~--------- 405 (1408)
+..|..+-.+||.+..|.-.++.- .++.......|+..|.+-+++|.+..+...
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m-----------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM-----------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC-----------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 467788888999999998877631 112234567899999999999999888631
Q ss_pred -cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhch
Q 000581 406 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1408)
Q Consensus 406 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1408)
.+....+..|-+.|++++|...|+...+.+ ..|+ ......++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---------------~~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---------------FPLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC---------------CCCC--------------eeehHHHHHHHHHCCC
Confidence 235678899999999999999999887753 1133 1235678888888888
Q ss_pred hhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCCCCCcCcccchhhhhHHHHHHHH-hcCChHHH
Q 000581 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTAL-REGDSEEF 563 (1408)
Q Consensus 485 ~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~aL~al-~~~d~~~~ 563 (1408)
.+......+.+.... -..+. ....+-=+.|+++............+..++...|... |.+. +.|+.+++
T Consensus 376 ~~~A~~vf~~m~~~d-----~~t~n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l----l~a~~~~g~~~~a 445 (697)
T PLN03081 376 MEDARNVFDRMPRKN-----LISWN-ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV----LSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHHHhCCCCC-----eeeHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHhcCCcHHHH
Confidence 776654444432211 00111 1122223445544322211000000112333344332 3333 66888887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000581 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1408)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELeei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1408)
.+..+.....- .+ .-..+.|..+=+.+.+...+.|-.++++ +. +..++. .
T Consensus 446 ~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~---~~-----------------~~~p~~-------~ 495 (697)
T PLN03081 446 WEIFQSMSENH--RI-KPRAMHYACMIELLGREGLLDEAYAMIR---RA-----------------PFKPTV-------N 495 (697)
T ss_pred HHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCCHHHHHHHHH---HC-----------------CCCCCH-------H
Confidence 77776544310 00 0112334443344444444444444432 10 111111 3
Q ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000581 644 EWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1408)
Q Consensus 644 ~W~~rl~~~q~~~~~~epil~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1408)
.|...+..+...-++-.. +.+.-.++.+......++...+++.-++|++..|.+...+++.-
T Consensus 496 ~~~~Ll~a~~~~g~~~~a----~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELG----RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHH----HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 588888776533221111 11222222322222334455578889999999999988777643
No 52
>PLN03077 Protein ECB2; Provisional
Probab=83.45 E-value=1.8e+02 Score=39.61 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhcCCchhhhhhhhc------cchhhHHHHHHHhCCHHHHHHHHHHHHh
Q 000581 381 RHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVR 433 (1408)
Q Consensus 381 ~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1408)
.....|++.|.+.++.|.+.-+... .+.+..+.-|.+.|++++|+..|+.-..
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3456677777777777777766542 1234666677777777777777766543
No 53
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=83.09 E-value=1.9 Score=47.06 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCCC
Q 000581 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~ 962 (1408)
..|+.-+++|+...+......+..++.-|=..+. ++.|.....+.+++.|...++..+||||.-|...
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGS
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheec
Confidence 3588889999988887766778888888876542 3567788888999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHH
Q 000581 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1408)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~l~~ 996 (1408)
.. ....|..+|.+.|...|. +.+|.|.+
T Consensus 124 ~~------~~s~L~~fLl~ra~~s~~ia~~l~W~L~~ 154 (184)
T PF00613_consen 124 PY------HDSPLARFLLRRALKSPRIAHQLFWYLKA 154 (184)
T ss_dssp SS------SS-HHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cc------cccHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 21 225799999999998885 34555544
No 54
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=82.32 E-value=7.1 Score=47.48 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=82.8
Q ss_pred eCCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhcc
Q 000581 1126 GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGST 1205 (1408)
Q Consensus 1126 gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~ 1205 (1408)
-++|. +++.|| -+++.|.....|+..+|.-... -.+.++++++++-+..-|-.|||++..--
T Consensus 67 f~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~------~~~~l~~~~~l~~g~~YgW~EfI~~~~c~-------- 128 (370)
T PF13575_consen 67 FSSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGT------PSLDLPTPKVLDRGDGYGWQEFIEHEPCN-------- 128 (370)
T ss_pred ECCCC--EEEEeC--cccHHHHHHHHHHHHHhhhccc------cccccccceeeeccCcceeEEEecCCCCC--------
Confidence 34663 457896 7999999999999999987532 13678888999987778999999863210
Q ss_pred cCCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheec
Q 000581 1206 RNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1285 (1408)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLg 1285 (1408)
+.+ . -.+|=+-++..-.+.|+||
T Consensus 129 ------------------------~~~-e--------------------------------v~~yY~r~G~llal~y~L~ 151 (370)
T PF13575_consen 129 ------------------------SEE-E--------------------------------VERYYYRLGVLLALLYLLN 151 (370)
T ss_pred ------------------------CHH-H--------------------------------HHHHHHHHHHHHHHHHHhC
Confidence 000 0 0134455677778999999
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhhhcc
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~f~~ 1314 (1408)
..|=|-+||.-+ -+..|=||+-.+|..
T Consensus 152 ~~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 152 GTDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CCcccccceEEe--CCCcEEEehhhhCCc
Confidence 999999999997 477888998888764
No 55
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=80.04 E-value=30 Score=40.53 Aligned_cols=31 Identities=26% Similarity=0.106 Sum_probs=26.0
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1279 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1279 ~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
...+.+-=||=|++||+++. |.+.-|||+.+
T Consensus 184 ~~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 184 KKIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 34567788999999999996 78899999954
No 56
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=79.16 E-value=4.8 Score=43.26 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhc-cCCCccHHHHHHHHHHhhccCC------------hHHHHHHHHHhhcccCccchhhhhHHHhhhcCC
Q 000581 895 GLALEGYKRCLV-IGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGS 961 (1408)
Q Consensus 895 ~~Ai~~Yl~sL~-~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~ 961 (1408)
..|+..|++|+. .+++ ....+..++.-|-..+. +..|.....+.+.+.+....+..+||||.-|..
T Consensus 38 p~aLp~~L~s~~~w~~~-~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 38 PNALPLVLASAPSWDWA-NLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKF 116 (169)
T ss_pred cHHHHHHHHhcccCcHH-HHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 468889999874 4444 34457888888876542 346778888999999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCh---hHHHHHH
Q 000581 962 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLL 995 (1408)
Q Consensus 962 ~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~l~ 995 (1408)
... -...|..+|.+.+...|. +.+|.|.
T Consensus 117 E~~------~~s~L~~FLl~RAl~n~~i~h~lfW~Lk 147 (169)
T cd00869 117 ELY------LKSALVRFLLSRSLVSLRFAHELYWLLK 147 (169)
T ss_pred ccc------CcChHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 631 125688999999988876 3445543
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=76.74 E-value=1.8e+02 Score=35.02 Aligned_cols=94 Identities=23% Similarity=0.187 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHH
Q 000581 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 762 (1408)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~ 762 (1408)
+...+....+.|+...|...+.++..+. ++ . . . ....++++..+|+.+.|+..++..+...+ ....+.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~---~--~-~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P---~~~~~~ 319 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PG---A--D-L-LLALAQLLEEQEGPEAAQALLREQLRRHP---SLRGFH 319 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---c--h-H-HHHHHHHHHHhCCHHHHHHHHHHHHHhCc---CHHHHH
Confidence 3444667788899999999887765442 11 1 1 1 24678999999999999999988777643 234455
Q ss_pred HHHhHHHHhh---hcCChHHHHHHhhccc
Q 000581 763 RLVGKWLAES---RSSNSRIILENYLKPA 788 (1408)
Q Consensus 763 ~llG~wlaet---~~e~~~~I~~~Y~~~a 788 (1408)
.+++.++... +....-.+++..++..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 5666666544 3444445566665544
No 58
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=74.30 E-value=7.1 Score=34.44 Aligned_cols=56 Identities=20% Similarity=-0.011 Sum_probs=42.7
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000581 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1408)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~ 754 (1408)
.+.|+++.|...+.++-... |.+..+.+..|+++...|+.+.|..+++.+....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46789999999887765442 223345789999999999999999999888876654
No 59
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=73.50 E-value=17 Score=31.83 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000581 685 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1408)
Q Consensus 685 ~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~ 753 (1408)
..|....+.|++..|.+.+.++... .|.+..+.+..+.+++.+|+...|+..++..+...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3477888999999999998876432 233445667899999999999999999888776544
No 60
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=73.22 E-value=1.8e+02 Score=37.85 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=35.6
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000581 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1408)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~ 749 (1408)
+..|++..|...+.++..+. |....+.+..+++++.+|+..+|+..++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44588888988877654332 1122244578999999999999998776544
No 61
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=73.12 E-value=3.9 Score=44.60 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=36.6
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1358 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~ 1358 (1408)
+|=||+|||++ +|++.=||||.+-.-. .| ...|.+++-++.++...|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~~----~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVELD----HP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceecC----CC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999999 7999999999764211 11 3456678888888877765
No 62
>PLN03077 Protein ECB2; Provisional
Probab=72.99 E-value=3.5e+02 Score=36.75 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhcCCchhhhhhhhc------cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCC
Q 000581 380 PRHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 453 (1408)
Q Consensus 380 ~~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p 453 (1408)
......|+..|.+.++.|.+..+... .+.+..+.-|-+.|++++|+..|+.-.+.+ ..|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~~P 387 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN---------------VSP 387 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------CCC
Confidence 45678899999999999999988752 235688999999999999999998765532 235
Q ss_pred CcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchHHHHHHHHHhCCCCCCCccccCCCC
Q 000581 454 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANF 533 (1408)
Q Consensus 454 ~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~ 533 (1408)
+ ......++.++-..|..+......+..... + ..........-..+--+.|+++....+... .
T Consensus 388 d--------------~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~-m 450 (857)
T PLN03077 388 D--------------EITIASVLSACACLGDLDVGVKLHELAERK-G-LISYVVVANALIEMYSKCKCIDKALEVFHN-I 450 (857)
T ss_pred C--------------ceeHHHHHHHHhccchHHHHHHHHHHHHHh-C-CCcchHHHHHHHHHHHHcCCHHHHHHHHHh-C
Confidence 5 113567888888888665543322221111 0 111111222233455566776654432211 1
Q ss_pred CCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHH
Q 000581 534 PSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSK 571 (1408)
Q Consensus 534 ~~~~~~~~~~f~~~L~~aL~al~~~d~~~~~~~i~~aR 571 (1408)
. ..+...|+..+ .+ ..+.|+.+++....+..+
T Consensus 451 ~---~~d~vs~~~mi-~~--~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 451 P---EKDVISWTSII-AG--LRLNNRCFEALIFFRQML 482 (857)
T ss_pred C---CCCeeeHHHHH-HH--HHHCCCHHHHHHHHHHHH
Confidence 1 12333454322 11 125577777766666554
No 63
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=70.63 E-value=65 Score=35.26 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=23.9
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1279 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1279 ~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
-....+-=||=||+|||++...|++--|||+.+
T Consensus 163 ~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 163 PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCCcEEEEeccccccceeeeccceeEEEecccc
Confidence 466778889999999999976788879999875
No 64
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=66.63 E-value=5.8 Score=43.41 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1358 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~c~~t~~~LR~ 1358 (1408)
||=+|+|||++ +|++.=||||.+-..+ .| +-+..+++-|+...+-.|+
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~~~----~~------------------~~~~~~~~d~~~~~~~f~~ 189 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVEHD----HP------------------HALEFLRMDCVNVNDFFRK 189 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEccccccCC----Cc------------------CHHHHHHHHHHHHHHHhcc
Confidence 89999999999 5999999999764322 22 2445677777776665543
No 65
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=64.21 E-value=37 Score=38.29 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
=||-||.||+++. +| +.=|||+.+
T Consensus 157 HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 157 HGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred ecCCCCCcEEEcC-CC-cEEEechhc
Confidence 6999999999996 56 889999975
No 66
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=61.33 E-value=21 Score=36.35 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=49.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHh
Q 000581 412 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 491 (1408)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y 491 (1408)
..-|...|+.++|..+|+..+..+.. + + ...+...++-.+|.++|..+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------~--------~---~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLS----------------G--------A---DRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC----------------c--------h---HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45678899999999999999985311 0 0 1223567888899999987765444
Q ss_pred hhccccccCCCCCCcchHHHHHHHHHhCCCCC
Q 000581 492 CKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 523 (1408)
Q Consensus 492 ~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD 523 (1408)
.+.......+.+....+..+.+-+.+.+|.++
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 44332221111122233334444555555554
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=60.88 E-value=39 Score=30.09 Aligned_cols=60 Identities=17% Similarity=-0.048 Sum_probs=46.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000581 688 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1408)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~ 755 (1408)
.++...++++.|...+..+-.+. |.+....+..|.++...|+...|+..++..+...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 56778889999999887765442 2233456789999999999999999999888766543
No 68
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.63 E-value=14 Score=28.77 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=19.6
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Q 000581 410 SQIVTLEHEGNWSKALEYYELQVR 433 (1408)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1408)
.....|.+.|+|++|..+|+..+.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445789999999999999999664
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=57.10 E-value=1.2e+02 Score=33.53 Aligned_cols=70 Identities=10% Similarity=-0.154 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHH-HcCC--hHHHHHHHHHHHhhcc
Q 000581 677 DFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 753 (1408)
Q Consensus 677 ~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW-~~Ge--~~~Ai~~Lk~i~~~~~ 753 (1408)
......|...+.++...|++..|..++.++..+.. .+.......|.+++ ..|+ ...|+.+++..+...+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34577899999999999999999999988765531 12234567899875 5566 4899999988777554
Q ss_pred C
Q 000581 754 S 754 (1408)
Q Consensus 754 ~ 754 (1408)
.
T Consensus 142 ~ 142 (198)
T PRK10370 142 N 142 (198)
T ss_pred C
Confidence 3
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=54.85 E-value=1.5e+02 Score=31.75 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc-----c---
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 406 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~--- 406 (1408)
+..+|.....-+-|..|+-+++..... .| ........+-.+|...+++|.+...... +
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH--------DP------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 456788888899999999999875432 11 1133445677788888888877666531 1
Q ss_pred -chhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 000581 407 -KLSSQIVTLEHEGNWSKALEYYELQVRS 434 (1408)
Q Consensus 407 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1408)
.......-|...|++++|+.+|+..++.
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 1123445677888888888888887763
No 71
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.57 E-value=1.2e+02 Score=29.07 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000581 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1408)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l 761 (1408)
.+.+.+....+.|++..|...+.++... +++.. ....+.+..+.++...|+...|+..++.++...+.....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 3566678888899999999988776433 11111 111345778999999999999999999888766554444555
Q ss_pred HHHHhHHHH
Q 000581 762 YRLVGKWLA 770 (1408)
Q Consensus 762 ~~llG~wla 770 (1408)
+..+|.-..
T Consensus 79 ~~~~~~~~~ 87 (119)
T TIGR02795 79 LLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHH
Confidence 555554443
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=54.56 E-value=17 Score=42.01 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc----c---
Q 000581 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H--- 406 (1408)
Q Consensus 334 d~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~----~--- 406 (1408)
++..++.. ..-+-|.+|+-+.|..+++. ..+.....++.+|.+.++.+.+..+... .
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 45555555 57788899998888654321 1234456677788888888888777542 1
Q ss_pred ----chhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 407 ----KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 407 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
-+-.....|++.|++++|+.+|+..++..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 12355678999999999999999999965
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.34 E-value=63 Score=28.43 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000581 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 750 (1408)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~G-e~~~Ai~~Lk~i~~ 750 (1408)
...|...|..+...|++..|.....++-.+. |.++.+.+-.+.+.+.+| +...|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3568888999999999999999988775552 223345567899999999 58999987765554
No 74
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=53.14 E-value=10 Score=39.76 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=24.6
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1281 GYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1281 gyiLgLGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
.+.+-=||=||+||+++ .|++.-||||.+
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a 134 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYA 134 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEecccc
Confidence 45556699999999999 688999999975
No 75
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=52.32 E-value=6.5e+02 Score=32.72 Aligned_cols=77 Identities=16% Similarity=-0.022 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000581 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1408)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a 759 (1408)
...|...+.+....|++..|...+.++..+. |....+.+..+.+++..|+...|+..++..+...+ ..+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~ 399 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD--------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS---EDP 399 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCH
Confidence 3445566777778889999888877654331 11223446788899999999999988877665433 234
Q ss_pred HHHHHHhH
Q 000581 760 DVYRLVGK 767 (1408)
Q Consensus 760 ~l~~llG~ 767 (1408)
+++..+|.
T Consensus 400 ~~~~~lg~ 407 (615)
T TIGR00990 400 DIYYHRAQ 407 (615)
T ss_pred HHHHHHHH
Confidence 45554444
No 76
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=51.96 E-value=9.8 Score=47.95 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=28.5
Q ss_pred hhhccch--hhheeccCCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1273 SVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1273 S~A~~S~--vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
+||+=|+ +||| =-|--|+|||||+ .|++=-.|||.|=
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILIDr-dGHIKLTDFGLCT 777 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILIDR-DGHIKLTDFGLCT 777 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEcc-CCceeeeeccccc
Confidence 4565555 3333 3588899999997 9999999999984
No 77
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=51.70 E-value=45 Score=36.18 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHhhcccCccchhhhhHHHhhhcCCCccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHHh
Q 000581 928 SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 997 (1408)
Q Consensus 928 ~~~~v~~~~~~~l~~vPs~kfl~~lpQLisRL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~l~~~ 997 (1408)
+++.|.....+.+.+.|....+..+|||+.-|..... ..|..+|.+.+...+. +.+|.+.+-
T Consensus 83 ~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae 147 (175)
T cd00871 83 GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTN 147 (175)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3677888889999999999999999999999998642 3688889888887654 667777654
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=49.83 E-value=24 Score=31.00 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=39.9
Q ss_pred HhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhhhccc
Q 000581 417 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 496 (1408)
Q Consensus 417 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gl~ 496 (1408)
..|+|++|+..|+..++.. |+ +. ....++.+|+-..|.++....+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-----------------p~------~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-----------------PD------NP-------EARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-----------------TT------SH-------HHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-----------------CC------CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5799999999999999965 33 22 346789999999999998877776655
Q ss_pred cc
Q 000581 497 SW 498 (1408)
Q Consensus 497 ~~ 498 (1408)
..
T Consensus 53 ~~ 54 (68)
T PF14559_consen 53 KQ 54 (68)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 79
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.37 E-value=1.3e+02 Score=35.89 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhHHHHHHH------HHh----------hc---------------cchHHHHHHHHHH
Q 000581 639 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVL------LQI----------LS---------------CKDFTMQHLLESA 687 (1408)
Q Consensus 639 ~~l~~~W~~rl~~~q~~~~~~epil~~R~~v------l~i----------l~---------------~~~~~~~~wl~~a 687 (1408)
+.+.+.|.+.+..-..++.+|..+|.+++.= -.+ |. ....++...++.+
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 4466778877776666778888877777541 111 10 1234566778889
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcC-CCCCCCchhhhhHHHHHHHHHHHcCC
Q 000581 688 STLRKGFRLSQAAAALHELKFLYT-GPGDQCSTVYWLGRLEEAKLLRAQGQ 737 (1408)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~-~~~~q~~~~~~~a~lE~Ak~LW~~Ge 737 (1408)
...|.+|+...|.+++..+-.+.. .|........ ...++.-.-+|+.|-
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-SERLESFEEFWESEV 211 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-HHHHHHHHHHhCcCC
Confidence 999999999999887544433332 1111111111 145677888998864
No 80
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=48.99 E-value=14 Score=41.66 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.7
Q ss_pred hhhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCC
Q 000581 1273 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1318 (1408)
Q Consensus 1273 S~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l 1318 (1408)
.+.-++++=+++.=.|||..|||..+ +|+++-||=|+||....+|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 35567788899999999999999997 8999999999999875444
No 81
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=48.67 E-value=69 Score=35.43 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCC--------cceEEEcCCCCchHHHhhh
Q 000581 1147 AVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPS--------AGILEWVDGTVPLGDYLIG 1203 (1408)
Q Consensus 1147 ~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~--------~GlIE~v~~t~tl~~il~~ 1203 (1408)
.+..+=+..++.+.+ ..|.|+++|..... .=+.|.++++.+|.+++..
T Consensus 56 ~ra~~E~~~~~~L~~---------~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~ 111 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE---------AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ 111 (206)
T ss_pred hHHHHHHHHHHHHHH---------cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence 355555666666654 47888888877655 2267999999999998754
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.50 E-value=21 Score=26.92 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.1
Q ss_pred HHHHHHHhhhcCcchhhchHHHHHHHHhc
Q 000581 94 VLKILKKYLMDDSVQIVDMTSQTLRGILS 122 (1408)
Q Consensus 94 il~~l~~~l~~~~~~~~~~a~~~L~~ils 122 (1408)
||..+.+++.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999998753
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.73 E-value=60 Score=38.21 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc----c-----
Q 000581 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H----- 406 (1408)
Q Consensus 336 ~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~----~----- 406 (1408)
..+|+.=.+-|+|-+|=-++...... -+.++..-+|..+|..||+|..+--+... .
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 46888888889988886555443221 24477788999999999999987655431 1
Q ss_pred chhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 407 KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
-+.-+.+-||-.|+.++|+.+|...+...
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 13467799999999999999999998854
No 84
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=47.32 E-value=14 Score=40.15 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
=||-||.|||++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 499999999999 799999999964
No 85
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=46.59 E-value=1.7e+02 Score=39.66 Aligned_cols=108 Identities=25% Similarity=0.301 Sum_probs=75.3
Q ss_pred CCCcEEeeeeecCccchhhhHHHHHHHHHHHHHHhcCcccccccceeecceEEEcCCCcceEEEcCCCCchHHHhhhccc
Q 000581 1127 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1206 (1408)
Q Consensus 1127 sdG~~y~~L~K~g~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~ 1206 (1408)
+||+ +.+.|| -+++-|+...+++..+|.-... ..+++++|+.-+ +-|-.|||++.. ..
T Consensus 111 ~~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~~-~ygw~EfI~~~~-c~-------- 168 (825)
T cd04792 111 SSGL--KLVYKP--RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDRG-DYGWEEFIEHQP-CQ-------- 168 (825)
T ss_pred CCCC--EEEECC--CCchHHHHHHHHHHHHHhcCCc--------cccccceeeecC-CcceEEeecCCC-CC--------
Confidence 4565 457886 7999999999999999875432 234788888654 459999998621 10
Q ss_pred CCCCCCCCCCCchhhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000581 1207 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1408)
Q Consensus 1207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyiLgL 1286 (1408)
+.+ + -.+|=+-++..-.+.|+||-
T Consensus 169 -----------------------~~~---e------------------------------~~~fY~r~G~llal~y~L~~ 192 (825)
T cd04792 169 -----------------------SKE---E------------------------------VERYYYRLGGLLALLYLLNA 192 (825)
T ss_pred -----------------------CHH---H------------------------------HHHHHHHHHHHHHHHHHcCC
Confidence 000 0 01344556777789999999
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhcc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~ 1314 (1408)
.|=|-+||.-+ -+..|=||+--+|..
T Consensus 193 tD~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 193 TDLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred cccchhhheee--CCCceEEeeHHhcCC
Confidence 99999999555 366788888776654
No 86
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=45.76 E-value=1.2e+02 Score=33.66 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.1
Q ss_pred CCCCCCeeEEecCCCeE--EEeechhhhcc
Q 000581 1287 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1314 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~v--vHIDfg~~f~~ 1314 (1408)
||-.-+||++.+..+++ +-||||..+-.
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 99999987643
No 87
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.60 E-value=13 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred CCCCCCeeEEecCCCeEEEeechhh
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
||=||+||+++. .| +.=||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999996 67 999999854
No 88
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=44.54 E-value=17 Score=39.79 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.5
Q ss_pred ccCCCCCCeeEEecCCCeEEEeechhhhccc
Q 000581 1285 GLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1408)
Q Consensus 1285 gLGDRH~~NILld~~tG~vvHIDfg~~f~~g 1315 (1408)
-=||=+|+||+++. +|++.=||||.++..+
T Consensus 147 ~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 34799999999996 8999999999886544
No 89
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=43.53 E-value=15 Score=46.68 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.7
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
=+|=||+||+++. .|+++-+|||..
T Consensus 288 HaDpHpGNi~v~~-~g~i~~lDfGi~ 312 (517)
T COG0661 288 HADPHPGNILVRS-DGRIVLLDFGIV 312 (517)
T ss_pred ccCCCccceEEec-CCcEEEEcCcce
Confidence 3899999999997 699999999974
No 90
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.00 E-value=96 Score=38.30 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=64.4
Q ss_pred HHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhcc---------c
Q 000581 337 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---------K 407 (1408)
Q Consensus 337 ~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~---------~ 407 (1408)
-||++=.-=+|++=||+|.--.+. +.+ ..+-....|-++|.+|+.++.+.||-... -
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~-------~kP-------nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALE-------LKP-------NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHh-------cCC-------CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 378888888999999999975432 111 22456778999999999999999996421 1
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHh
Q 000581 408 LSSQIVTLEHEGNWSKALEYYELQVR 433 (1408)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1408)
+-....-||..++..+|-.+|+.-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33455789999999999999999877
No 91
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=42.34 E-value=17 Score=43.05 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhccc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g 1315 (1408)
-|-+|+||||+. +|.+=-+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 688999999998 9999999999876444
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=42.01 E-value=1.9e+02 Score=28.88 Aligned_cols=68 Identities=18% Similarity=-0.027 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~ 754 (1408)
....|...+....+.|++..|...+.++..+. |.++...+..|.+++..|+...|+..++..++..+.
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 45667778889999999999998877654332 112233467899999999999999998877765443
No 93
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=41.99 E-value=56 Score=28.76 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=37.2
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc-hhhH
Q 000581 409 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 487 (1408)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG-~~~~ 487 (1408)
......|.++|+|++|+.+|+..++.+ |+ +.....++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-----------------p~-------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-----------------PN-------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-----------------TT-------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHhCccHHH
Confidence 345678889999999999999999965 33 2234667777888888 5554
Q ss_pred H
Q 000581 488 L 488 (1408)
Q Consensus 488 L 488 (1408)
.
T Consensus 57 A 57 (69)
T PF13414_consen 57 A 57 (69)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=41.69 E-value=76 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000581 725 RLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1408)
Q Consensus 725 ~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~ 755 (1408)
.+..|+.++..|+.+.|+.+++..++..+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999876644
No 95
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=41.65 E-value=15 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.6
Q ss_pred ccCCCCCCeeEEecCCC----eEEEeechhh
Q 000581 1285 GLGDRHAMNILIDQATA----EVVHIDLGVA 1311 (1408)
Q Consensus 1285 gLGDRH~~NILld~~tG----~vvHIDfg~~ 1311 (1408)
-=+|=||+||+++. +| +++-+|||..
T Consensus 282 fHaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 282 FHADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eeCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 44899999999996 55 9999999976
No 96
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=41.45 E-value=18 Score=38.82 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.5
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
=||-||+||+++ +|.+.=||||.+-
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~ 162 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAV 162 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECcccc
Confidence 479999999999 8999999999764
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=41.17 E-value=1.3e+02 Score=30.68 Aligned_cols=62 Identities=29% Similarity=0.175 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHH
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLA 745 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~L 745 (1408)
..+.+++.++..|.-|+...|.+.|.+.. ..+++.... ...+.-.|-.|+..|++++|+..+
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~--~~~p~~~~~---~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEAL--EEFPDDELN---AALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcccc---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35678899999999999999999987753 222322211 123345788999999999999865
No 98
>PRK14879 serine/threonine protein kinase; Provisional
Probab=41.02 E-value=19 Score=39.33 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.7
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
=||-+|.|||++ .|.+.-||||.+
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 389999999999 799999999965
No 99
>smart00090 RIO RIO-like kinase.
Probab=39.92 E-value=21 Score=40.65 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.1
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhhhccc
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~f~~g 1315 (1408)
=||=||+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999876544
No 100
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=39.85 E-value=2.2e+02 Score=31.32 Aligned_cols=82 Identities=18% Similarity=0.073 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000581 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1408)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~ 760 (1408)
+.+-+.|..+-..|++..|...+.++..- .+.+.. ...+.+..|......|+...|+...+.++..++.....+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 34556678888999999999998887543 222221 2235688999999999999999999999999988887788
Q ss_pred HHHHHhH
Q 000581 761 VYRLVGK 767 (1408)
Q Consensus 761 l~~llG~ 767 (1408)
++.++|.
T Consensus 81 A~Y~~g~ 87 (203)
T PF13525_consen 81 ALYMLGL 87 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777664
No 101
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.49 E-value=1e+02 Score=27.88 Aligned_cols=70 Identities=11% Similarity=-0.132 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~ 749 (1408)
+...+...|...+..|+++.|...+.++..+... -+...+....+....+.+.-..|+.+.|+..++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455677789999999999999887776555211 111122223344578888999999999999876543
No 102
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=39.39 E-value=19 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.5
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
-||=||+||+++. +|+++=+|||.+
T Consensus 280 H~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 280 HADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred eCCCCcccEEECC-CCcEEEEeCCCe
Confidence 3799999999985 899999999976
No 103
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=39.13 E-value=3.2e+02 Score=29.08 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhcc--------
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-------- 406 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~-------- 406 (1408)
+..+|.....-|-|..|+-+.+...... | ..+...-.+-.+|...+++|.+.-.....
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLN--------P------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 3567888888899999999998765321 1 12334455677778888888776654311
Q ss_pred ---chhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 407 ---KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 407 ---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
.......-|...|++++|..+|+..++..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11234567889999999999999988853
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=37.72 E-value=1.2e+02 Score=34.82 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhh--------cc
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SH 406 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~--------~~ 406 (1408)
+...|....+.|-+.+|+-+.+..+... | ..++....|.-++-..++.+.+-.+.. .+
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------P------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 4578888999999999999999876542 2 224566677777777788886444432 12
Q ss_pred c-hhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 407 K-LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 407 ~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
. ......-|..+|+.++|+.+|+..+...
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccccccccccccccccccc
Confidence 2 2456789999999999999999998854
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=37.37 E-value=2.3e+02 Score=24.49 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000581 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1408)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~ 752 (1408)
|...+......|++..|...+.++.... +....+.+..+.+++..|+...|+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777888999999998887754331 1111335678999999999999999888776643
No 106
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=37.32 E-value=23 Score=44.98 Aligned_cols=55 Identities=24% Similarity=0.138 Sum_probs=37.0
Q ss_pred hhccchhhheeccCCCCCCeeEEecCCCeEEEeechhhhcccCCCCCCCCCCcccccchh
Q 000581 1274 VAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDII 1333 (1408)
Q Consensus 1274 ~A~~S~vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l~~pE~VPFRLTrniv 1333 (1408)
.|+-.+=+.=.-.+|-||+|||++..-|.+--+|||..-+.-..+..| ++|.+.+
T Consensus 426 ~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp-----~~t~~y~ 480 (612)
T KOG0603|consen 426 SAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP-----ALTLQYV 480 (612)
T ss_pred HHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchhhccc-----chhhccc
Confidence 344444444456799999999997668999999999876543223233 5555543
No 107
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=37.22 E-value=3e+02 Score=28.12 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000581 546 ENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1408)
Q Consensus 546 ~~L~~aL~al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-------S~~~~y~~lvr 595 (1408)
..+..+..|+.+||++.+...|.+|..-+..-.+++-.| +..++|.++.+
T Consensus 33 ~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~ 89 (124)
T TIGR00208 33 KFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYR 89 (124)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 345567788999999999999999987664333333322 34556777665
No 108
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=36.87 E-value=2.3e+02 Score=35.07 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.3
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1281 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1281 gyiLgLGDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
+..|-=||-|+.|||+.. +.+.=|||-++|
T Consensus 222 ~~~l~HgDl~~gni~~~~--~~~~viD~E~a~ 251 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTE--EETKVIDPEFAF 251 (401)
T ss_pred CCceeeccCCcccEEeeC--CCcEEEeccccc
Confidence 334788999999999985 468899997664
No 109
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=36.71 E-value=19 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
-|--|+|||||+ +|.+=-+|||++=
T Consensus 168 RDLKPENiLlD~-~G~iKitDFGFAK 192 (355)
T KOG0616|consen 168 RDLKPENLLLDQ-NGHIKITDFGFAK 192 (355)
T ss_pred ccCChHHeeecc-CCcEEEEeccceE
Confidence 588999999997 9999999999873
No 110
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=36.63 E-value=75 Score=31.88 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHhHHH
Q 000581 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWL 769 (1408)
Q Consensus 727 E~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wl 769 (1408)
|.|+-+|+.|++..|+.++++++...........++.+=|.-.
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if 43 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIF 43 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHH
Confidence 4689999999999999999998876654443334555545443
No 111
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=36.55 E-value=73 Score=27.73 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=38.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHH
Q 000581 411 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1408)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 490 (1408)
+...|...|++++|+..|+..++.. |+ +.+...++-+|+...|.+.....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-----------------P~-------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-----------------PD-------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-----------------TT-------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567889999999999999999964 33 22356788889999998776544
Q ss_pred hh
Q 000581 491 YC 492 (1408)
Q Consensus 491 y~ 492 (1408)
+.
T Consensus 53 ~~ 54 (65)
T PF13432_consen 53 YY 54 (65)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 112
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.61 E-value=1.1e+03 Score=30.63 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhh-hhhhc-----
Q 000581 332 SVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLY-GIIQS----- 405 (1408)
Q Consensus 332 ~Id~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~y-Gi~~~----- 405 (1408)
+.|-+.||..-.+-|-|..|+-|.-+...+ +| ...+..-+|-.||.+..+-|.-. |....
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--------d~------t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~ 113 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--------DP------TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP 113 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhcc--------CC------Ccccceeeehhhhhcccchhhhhhhhhhhhhccc
Confidence 466889999999999999998777653321 11 11233345778999988888532 22210
Q ss_pred ---cchhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 406 ---HKLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 406 ---~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
........-|..-|+.++||..|+..++.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~ 146 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK 146 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC
Confidence 012234456667799999999999999965
No 113
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=35.14 E-value=15 Score=40.22 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=20.6
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhhccc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f~~g 1315 (1408)
||-++.|||++. |+++=||||-+++..
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC
Confidence 899999999996 599999999777654
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=33.54 E-value=1.8e+02 Score=28.98 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc-----c-c-
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K- 407 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~-~- 407 (1408)
...+|..+...+.|..|+-+++..... .| ..+...-.+-.+|...++++.+--+... + +
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--------DP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--------CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 457888899999999999998874431 11 2245566788888888888877655431 1 1
Q ss_pred --hhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 408 --LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
.-....-|...|++++|+.+|+..++..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1234567899999999999999998864
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.52 E-value=85 Score=42.83 Aligned_cols=124 Identities=21% Similarity=0.376 Sum_probs=75.5
Q ss_pred CchHHHHHHHHHHHhhhccch--hhheeccCCCCCCeeEEecCCCeEEEeechhhhc---ccCC-CCCCCCCCcccccch
Q 000581 1259 QPAYWFEKRLAYTRSVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE---QGLM-LKTPERVPFRLTRDI 1332 (1408)
Q Consensus 1259 ~~~~w~~~R~~ft~S~A~~S~--vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~f~---~g~~-l~~pE~VPFRLTrni 1332 (1408)
=|++|-.|-.+= --+|+-|+ +|||= -|--|+|||||. .|+|=-.|||-|.- .|.. -.++=-.|==+.|++
T Consensus 172 ~pE~~ArFY~aE-iVlAldslH~mgyVH--RDiKPDNvLld~-~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEv 247 (1317)
T KOG0612|consen 172 LPEDWARFYTAE-IVLALDSLHSMGYVH--RDIKPDNVLLDK-SGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEV 247 (1317)
T ss_pred ChHHHHHHHHHH-HHHHHHHHHhcccee--ccCCcceeEecc-cCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHH
Confidence 355554443221 12344443 45553 577899999997 99999999999974 3432 123333444566777
Q ss_pred hhccccc----ccc------ch------------hHHHHHHHHHHHhcCchHH------------HHHHHHhccCCcccc
Q 000581 1333 IDGMGVT----GVE------GV------------FRRCCEKTLSVMRTNKEAL------------LTIVEVFIHDPLYKW 1378 (1408)
Q Consensus 1333 v~~mG~~----g~e------G~------------Fr~~c~~t~~~LR~~~~~l------------~~iLe~f~~Dpl~~W 1378 (1408)
..+||.- |.| |+ |..+...|+.-+-.|++.| -++++.|+-||=...
T Consensus 248 Lqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~~~e~RL 327 (1317)
T KOG0612|consen 248 LQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLCDREVRL 327 (1317)
T ss_pred HHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhcChhhhc
Confidence 7777654 332 22 3456677777777775554 477888888876666
Q ss_pred ccChHHHH
Q 000581 1379 ALSPLKAL 1386 (1408)
Q Consensus 1379 ~~~~~~~~ 1386 (1408)
..+...+.
T Consensus 328 grngiedi 335 (1317)
T KOG0612|consen 328 GRNGIEDI 335 (1317)
T ss_pred ccccHHHH
Confidence 54444443
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.42 E-value=2.2e+02 Score=34.55 Aligned_cols=87 Identities=9% Similarity=-0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc-----cc--
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 407 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~~-- 407 (1408)
...-|..|..-+.|..|+-+.+..+.. .| ..+...-.+-.+|..+++.+.+...... +.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 346789999999999999888876543 11 2245566678899999999998887642 11
Q ss_pred --hhhHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 408 --LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
.-....-|.+.|++++|+.+|+..++..
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2244568889999999999999999864
No 117
>PRK12274 serine/threonine protein kinase; Provisional
Probab=33.42 E-value=30 Score=38.79 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCC-CCCeeEEecCCCeEEEeechhhh
Q 000581 1287 GDR-HAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1287 GDR-H~~NILld~~tG~vvHIDfg~~f 1312 (1408)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 888 589999995 8999999999874
No 118
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=32.68 E-value=63 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 410 SQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
....-|...|++++|+.+|+..++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34567899999999999999999865
No 119
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=32.64 E-value=30 Score=39.40 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.0
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
=+|-+|+|||++. +|++.=||||.+
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~ 189 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRG 189 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCc
Confidence 4799999999997 789999999965
No 120
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=32.27 E-value=9.4e+02 Score=28.70 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000581 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1408)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~ 752 (1408)
.+...+...-+.|++..|...+.++... .+....+....+.++..+|+...|+..++.++...
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 3455577788899999999988776432 11122344568899999999999999888777644
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=32.04 E-value=1.6e+02 Score=27.23 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred chhhhhhhhhHhHHHHhhccccCCCCCCCcCCC-cchHHHHHHHHHHhcCCchhhhhhhhccchh--------hHHHHHH
Q 000581 346 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLET-LPRHIEILVSAVTQINEPDSLYGIIQSHKLS--------SQIVTLE 416 (1408)
Q Consensus 346 ~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~-~~~~~e~L~~Iy~~IdePD~~yGi~~~~~l~--------~~i~~yE 416 (1408)
|.|..|+.+.|...... ... .....-.|-.+|-+.++.+.++.+.+..... ....-|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~-------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD-------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL 69 (84)
T ss_dssp T-HHHHHHHHHHHHHHH-------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q ss_pred HhCCHHHHHHHHHHH
Q 000581 417 HEGNWSKALEYYELQ 431 (1408)
Q Consensus 417 ~eg~W~kAL~~Yd~~ 431 (1408)
++|+|++|+..|+..
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
No 122
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.95 E-value=1e+03 Score=29.13 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 000581 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1408)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~ 747 (1408)
......+.++-+.|++..|...+..++.+..+ |.... ....+.++|..|+.+.|.++-+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-----p~~~~--~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ-----LDAND--LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-----CCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556789999999999999987643333211 21122 23689999999999999887654
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=31.66 E-value=3.5e+02 Score=30.05 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000581 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1408)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a 759 (1408)
...+...+..+.+.|+++.|...+.++.... +. .+....+.+..+.++-..|+...|+..++.++...+.+....
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455667788889999999999887764432 11 111112356789999999999999999999998877665544
Q ss_pred HHHHHHhH
Q 000581 760 DVYRLVGK 767 (1408)
Q Consensus 760 ~l~~llG~ 767 (1408)
.++..+|.
T Consensus 108 ~a~~~~g~ 115 (235)
T TIGR03302 108 YAYYLRGL 115 (235)
T ss_pred HHHHHHHH
Confidence 55555553
No 124
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=31.18 E-value=67 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcch
Q 000581 411 QIVTLEHEGNWSKALEYYELQVRSDV 436 (1408)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~ 436 (1408)
....|.+.|+|++|..+|+..++..|
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44678999999999999999998653
No 125
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=29.95 E-value=36 Score=39.75 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=28.5
Q ss_pred hhhheeccCCCCCCeeEEecC---CCeEEEeechhh
Q 000581 1279 MVGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1311 (1408)
Q Consensus 1279 ~vgyiLgLGDRH~~NILld~~---tG~vvHIDfg~~ 1311 (1408)
-...+|==||-|++|||++.. +|.+.-|||.++
T Consensus 176 ~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 176 GSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 367788889999999999964 589999999876
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=29.81 E-value=2.8e+02 Score=26.49 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000581 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1408)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~ 755 (1408)
.+...+.+..+.|++..|...+.++.... +.....+ .+.+..+.++...|+...|+..++.++...+.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAP---DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCccc---HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 34556889999999999999988765432 1111111 234677889999999999999999888876544
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.71 E-value=3.2e+02 Score=31.71 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=58.3
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000581 682 HLLESAST-LRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1408)
Q Consensus 682 ~wl~~a~l-aRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~ 760 (1408)
.+...|-- ..+.|++..|..++..+-.. .|++...+ .+.+-.+++++.+|+...|+...+.++.+++.+...++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34444443 36678999998887665432 23222112 34577899999999999999999999999888777788
Q ss_pred HHHHHhHH
Q 000581 761 VYRLVGKW 768 (1408)
Q Consensus 761 l~~llG~w 768 (1408)
++..+|.-
T Consensus 219 Al~klg~~ 226 (263)
T PRK10803 219 AMFKVGVI 226 (263)
T ss_pred HHHHHHHH
Confidence 87776643
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=29.70 E-value=3.4e+02 Score=28.12 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000581 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1408)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~ 755 (1408)
....|...+.++-+.|++..|.....++-.+. |.+..+.+..+.++...|+..+|+..++..+.-.+.+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45667888899999999999999887765442 1222345667888999999999999887776654433
No 129
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=29.17 E-value=33 Score=39.46 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCCCCCeeEEecCCCeEEEeechhh------hcccCC-CCCCCCCCcccccchh--------hcccccccc
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVA------FEQGLM-LKTPERVPFRLTRDII--------DGMGVTGVE 1342 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~------f~~g~~-l~~pE~VPFRLTrniv--------~~mG~~g~e 1342 (1408)
-|--|+|||+|+ +|.|=-.|||.| +.+..- -=.|=..|=|++++=- =-+|++=+|
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~E 261 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYE 261 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEee
Confidence 577899999997 999999999988 211110 1135666778887642 235666554
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.04 E-value=3.1e+02 Score=36.48 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhh---------c
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------S 405 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~---------~ 405 (1408)
+..||.+++++|.|.-|+..+|.-++. ........-.+..|-.+.+..|.+-.... .
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~--------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQR--------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhh--------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Q ss_pred cchhhHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000581 406 HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 485 (1408)
Q Consensus 406 ~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 485 (1408)
..+.....-..+.|+.++|.++|+..+... |+ ..+...++-.+|..+|..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-----------------p~-------------~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQH-----------------PE-------------FENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----------------CC-------------cHHHHHHHHHHHHHcCCH
Q ss_pred hHH-HHhhhccc
Q 000581 486 HVL-DMYCKGLT 496 (1408)
Q Consensus 486 ~~L-~~y~~gl~ 496 (1408)
... ..|.+.+.
T Consensus 205 ~~A~~~~~~a~~ 216 (694)
T PRK15179 205 WRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHH
No 131
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=28.29 E-value=48 Score=33.12 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
||-+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999999653
No 132
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=28.14 E-value=43 Score=36.56 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=25.5
Q ss_pred hhheeccCCCCCCeeEEecC-CCeEEEeechhh
Q 000581 1280 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1311 (1408)
Q Consensus 1280 vgyiLgLGDRH~~NILld~~-tG~vvHIDfg~~ 1311 (1408)
.-..+==||-|++||+++.. +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 45667779999999999975 455677999865
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.00 E-value=2.3e+02 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHH
Q 000581 410 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 488 (1408)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L 488 (1408)
....-+...|++++|..+|+..+..+ |+ + .....++-.|+..+|.....
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~-----------------p~------~-------~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLD-----------------AS------H-------PEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-----------------CC------C-------cHHHHHHHHHHHHcCCHHHH
Confidence 45567888999999999999999854 33 1 12456777789988876544
No 134
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.91 E-value=48 Score=36.47 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.6
Q ss_pred ccceeecceEEEcCCCcce--EEEcCCCCchHHHhh
Q 000581 1169 RRLGVRTYKVVPFTPSAGI--LEWVDGTVPLGDYLI 1202 (1408)
Q Consensus 1169 r~L~i~tY~ViPLs~~~Gl--IE~v~~t~tl~~il~ 1202 (1408)
+.+.+.++.|.-..|+.|+ +|||++. .|.+++.
T Consensus 57 ~~~GV~~P~v~dvD~~~~~I~me~I~G~-~lkd~l~ 91 (204)
T COG3642 57 REAGVPVPIVYDVDPDNGLIVMEYIEGE-LLKDALE 91 (204)
T ss_pred HHcCCCCCeEEEEcCCCCEEEEEEeCCh-hHHHHHH
Confidence 3568999999999999964 6999884 4666554
No 135
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=26.84 E-value=1.5e+02 Score=26.27 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHhh
Q 000581 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1408)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~ 492 (1408)
..|-+.++|++|+.+++..+... |+ +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-----------------PD-------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----------------cc-------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 46789999999999999999964 33 1123455677899999877654433
Q ss_pred h
Q 000581 493 K 493 (1408)
Q Consensus 493 ~ 493 (1408)
+
T Consensus 53 ~ 53 (73)
T PF13371_consen 53 E 53 (73)
T ss_pred H
Confidence 3
No 136
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=26.40 E-value=48 Score=37.28 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.9
Q ss_pred hheeccCCCCCCeeEEecCCCeE-EEeechhh
Q 000581 1281 GYIVGLGDRHAMNILIDQATAEV-VHIDLGVA 1311 (1408)
Q Consensus 1281 gyiLgLGDRH~~NILld~~tG~v-vHIDfg~~ 1311 (1408)
.+.|==||=|++|||++. |++ --|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQD--GRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEEC--CCEEEEEeCccc
Confidence 445666999999999984 565 48999975
No 137
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=26.17 E-value=51 Score=37.27 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred CCCCCCeeEEecCCCeEEEeechh
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGV 1310 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~ 1310 (1408)
||=||+|++++ .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999999 57799999974
No 138
>PRK05685 fliS flagellar protein FliS; Validated
Probab=25.61 E-value=4.4e+02 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000581 548 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1408)
Q Consensus 548 L~~aL~al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-------S~~~~y~~lvr 595 (1408)
+..|..|+.+||++.+...|.+|+.-+.+-.+++-.| +...+|.++.+
T Consensus 39 l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 39 LAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 4456778899999999999999988664433333322 24446766654
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.57 E-value=4.8e+02 Score=29.80 Aligned_cols=80 Identities=13% Similarity=-0.012 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000581 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1408)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l 761 (1408)
.+-..|..+-+.|++..|...+.++... .+.+ +.-..+.+..|......|+...|+...+.+++..+.++..+.+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNR--YPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3445577888899999999998887543 2211 2112345788899999999999999999999999988888888
Q ss_pred HHHHh
Q 000581 762 YRLVG 766 (1408)
Q Consensus 762 ~~llG 766 (1408)
+.++|
T Consensus 109 ~Y~~g 113 (243)
T PRK10866 109 LYMRG 113 (243)
T ss_pred HHHHH
Confidence 88877
No 140
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.33 E-value=88 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHH
Q 000581 87 SEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGI 120 (1408)
Q Consensus 87 ~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~i 120 (1408)
....+..++..|...|.|++..|+..|..||-+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999998754
No 141
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=24.87 E-value=72 Score=35.56 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=31.9
Q ss_pred cCCCCCCeeEEecCCCeEEEeechhhhc---ccCCCCCCCCCCcccccchhh
Q 000581 1286 LGDRHAMNILIDQATAEVVHIDLGVAFE---QGLMLKTPERVPFRLTRDIID 1334 (1408)
Q Consensus 1286 LGDRH~~NILld~~tG~vvHIDfg~~f~---~g~~l~~pE~VPFRLTrniv~ 1334 (1408)
=+|-.|+||+++ .+|++.-+|||.+.. ........-..|.=..|++..
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 378899999999 699999999998852 122222222333445566655
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.70 E-value=1.2e+03 Score=31.45 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHhHHHHhhhcCChHHHHHHhhcccccccc
Q 000581 714 GDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSE 793 (1408)
Q Consensus 714 ~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wlaet~~e~~~~I~~~Y~~~a~~~~~ 793 (1408)
..+..+.+...-+-.|+.+.+.|+.++|..++..++...+.+
T Consensus 131 ~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-------------------------------------- 172 (895)
T KOG2076|consen 131 GKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-------------------------------------- 172 (895)
T ss_pred cccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc--------------------------------------
Q ss_pred ccccchhHHHHHhhhhhhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHHHH
Q 000581 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1408)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~lA~f~d~~~~~~~~~~~~~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~ 873 (1408)
..+|+.||.-++++ |+ ++..+..-..+..-.++++.-|..-..
T Consensus 173 -------------~~ay~tL~~IyEqr----------Gd--------------~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 173 -------------PIAYYTLGEIYEQR----------GD--------------IEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred -------------hhhHHHHHHHHHHc----------cc--------------HHHHHHHHHHHHhcCCCChHHHHHHHH
Q ss_pred HHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhccCChHHHHHHHHHhhcccC
Q 000581 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQ 944 (1408)
Q Consensus 874 ~~~~lD~~e~~~l~~~~~~fl~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vP 944 (1408)
--..++ ++.+|.-+|-++|++.+.. .+.+.+=.+|.-+.|+.....+...+.+...|
T Consensus 216 ls~~~~-------------~i~qA~~cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 216 LSEQLG-------------NINQARYCYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhcc-------------cHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.62 E-value=4.8e+02 Score=26.79 Aligned_cols=61 Identities=26% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000581 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1408)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i 748 (1408)
.+..|+.+-..|.+..|...+..+..-. ..+.....+++-.|+++..+|+.+.|+..|+.+
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4667899999999999999988764321 112222346778899999999999999988553
No 144
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=23.49 E-value=39 Score=40.37 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1287 GDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1287 GDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
.|--|+|||||. .|++.--|||.|=
T Consensus 149 RDlKPENILLd~-~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 149 RDLKPENILLDE-QGHIKLTDFGLCK 173 (357)
T ss_pred ccCCHHHeeecC-CCcEEEeccccch
Confidence 588899999996 9999999999884
No 145
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.43 E-value=1.3e+02 Score=25.12 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHH
Q 000581 725 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 764 (1408)
Q Consensus 725 ~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~l 764 (1408)
+++.|+.+-+.|+.+.|..+|+.++.+.+ ..+..++..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~-~~q~~eA~~L 40 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD-EAQRQEARAL 40 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 56789999999999999999999986432 3344444443
No 146
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=23.28 E-value=2.1e+02 Score=31.26 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=35.9
Q ss_pred eccCCCCCCeeEEecCCCeEEEeechhhhcccCCC--CCCCCCCcccccchhhccc
Q 000581 1284 VGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMG 1337 (1408)
Q Consensus 1284 LgLGDRH~~NILld~~tG~vvHIDfg~~f~~g~~l--~~pE~VPFRLTrniv~~mG 1337 (1408)
+--||-+|+||+++. +|.+.=+|||.+...+... ..+...+.-+.|++..+..
T Consensus 119 i~h~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~ 173 (253)
T cd05122 119 IIHRDIKAANILLTS-DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP 173 (253)
T ss_pred EecCCCCHHHEEEcc-CCeEEEeeccccccccccccccceecCCcccCHHHHcCCC
Confidence 456999999999996 8999999999876544221 2222334445666665544
No 147
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=23.18 E-value=3.8e+02 Score=24.02 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhccchhhHHHH
Q 000581 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVT 414 (1408)
Q Consensus 335 ~~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~~l~~~i~~ 414 (1408)
+..+|..-..=|-|.+|+-|.|.... |...+++.....+ ..+.....-
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~a----~~~~~lg~~ 55 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALD----------------------------IEEQLGDDHPDTA----NTLNNLGEC 55 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH----------------------------HHHHTTTHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------HHHHHCCCCHHHH----HHHHHHHHH
Confidence 34667777777888888888876432 2333333211111 123455678
Q ss_pred HHHhCCHHHHHHHHHHHHh
Q 000581 415 LEHEGNWSKALEYYELQVR 433 (1408)
Q Consensus 415 yE~eg~W~kAL~~Yd~~l~ 433 (1408)
|...|+.++|+.+|+..++
T Consensus 56 ~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 56 YYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 8899999999999998876
No 148
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=23.09 E-value=1.4e+02 Score=37.28 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHhHHHHhh-hcCChHHHHHHhh
Q 000581 722 WLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAES-RSSNSRIILENYL 785 (1408)
Q Consensus 722 ~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~~llG~wlaet-~~e~~~~I~~~Y~ 785 (1408)
.+++...|-++|+.|+.++||.+.+++++.++.. ..-.+...+-+|+-|- +......++.+|-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3567789999999999999999999999876532 1222344444554332 2334444555553
No 149
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=22.19 E-value=66 Score=30.75 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.8
Q ss_pred eeEEecCCCeEEEeec
Q 000581 1293 NILIDQATAEVVHIDL 1308 (1408)
Q Consensus 1293 NILld~~tG~vvHIDf 1308 (1408)
.|-.|+.|++++||||
T Consensus 73 evQ~~p~~~~i~HvDF 88 (88)
T PF01386_consen 73 EVQRDPVTDKILHVDF 88 (88)
T ss_dssp EEEEESSSSSEEEEEE
T ss_pred eeeeCCCCCCeEeccC
Confidence 4667889999999998
No 150
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=21.98 E-value=2.2e+02 Score=29.79 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.2
Q ss_pred ccCCCCCCeeEEecCCCeEEEeechhhh
Q 000581 1285 GLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1408)
Q Consensus 1285 gLGDRH~~NILld~~tG~vvHIDfg~~f 1312 (1408)
--||-+|+||+++..+|.+.=+|||.+-
T Consensus 114 ~H~dl~~~ni~~~~~~~~~~l~d~~~~~ 141 (215)
T cd00180 114 IHRDLKPENILLDSDNGKVKLADFGLSK 141 (215)
T ss_pred eccCCCHhhEEEeCCCCcEEEecCCceE
Confidence 3489999999999767999999999774
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.54 E-value=1e+02 Score=25.01 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=22.7
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcc
Q 000581 410 SQIVTLEHEGNWSKALEYYELQVRSD 435 (1408)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1408)
.....|+..|++++|..+|+..++..
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34578999999999999999999965
No 152
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=21.54 E-value=1.4e+02 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000581 725 RLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1408)
Q Consensus 725 ~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~ 754 (1408)
.+..|.+.-..|+...|+..++.++.+++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 356678888899999999999999988763
No 153
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=21.26 E-value=67 Score=37.35 Aligned_cols=29 Identities=28% Similarity=0.068 Sum_probs=22.6
Q ss_pred heeccCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1282 YIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1282 yiLgLGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
+.+==||-||+|||++. ++.+.-|||+.+
T Consensus 175 ~~l~HgD~~~~Nil~~~-~~~~~iIDfe~a 203 (296)
T cd05153 175 RGVIHADLFRDNVLFDG-DELSGVIDFYFA 203 (296)
T ss_pred CcCCccCcCcccEEEeC-CceEEEeehhhh
Confidence 34446999999999996 455579999865
No 154
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.16 E-value=7.8e+02 Score=25.97 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHH
Q 000581 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 762 (1408)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW~~Ge~~~Ai~~Lk~i~~~~~~~~~~a~l~ 762 (1408)
+-+-|..+-+.|++..|...+..+.. ..+.+...+ .++++.+-....+|+...|+...+.+++-.+.++...-++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~--ryP~g~ya~---qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDT--RYPFGEYAE---QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCcccH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45567888899999999988877643 122222122 3578888899999999999999999999888887777676
Q ss_pred HHHh
Q 000581 763 RLVG 766 (1408)
Q Consensus 763 ~llG 766 (1408)
.+.|
T Consensus 88 Y~~g 91 (142)
T PF13512_consen 88 YMRG 91 (142)
T ss_pred HHHH
Confidence 6655
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=21.09 E-value=4.2e+02 Score=22.75 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=57.8
Q ss_pred HHHHHHHHHhchhhhhhhhhHhHHHHhhccccCCCCCCCcCCCcchHHHHHHHHHHhcCCchhhhhhhhc-----c----
Q 000581 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1408)
Q Consensus 336 ~~lA~aA~~C~aya~ALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~---- 406 (1408)
..+|.....-+.|..|+-+++...... + ..+...-.+-.+|...++++.+..+... +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--------P------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--------C------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 456777777888999988887644321 1 1123445577888888888888877541 1
Q ss_pred chhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 000581 407 KLSSQIVTLEHEGNWSKALEYYELQVRS 434 (1408)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1408)
........|...|++++|...++..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1224456788899999999999887663
No 156
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=20.47 E-value=1.7e+02 Score=32.63 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.9
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeechhh
Q 000581 1280 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1408)
Q Consensus 1280 vgyiLgLGDRH~~NILld~~tG~vvHIDfg~~ 1311 (1408)
...+|-=||-|++|||++..+|.+.=|||-.+
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a 199 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYA 199 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccC
Confidence 44567779999999999975688999999865
No 157
>PRK05231 homoserine kinase; Provisional
Probab=20.08 E-value=72 Score=37.61 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.0
Q ss_pred eccCCCCCCeeEEecCCCeE-EEeechhh
Q 000581 1284 VGLGDRHAMNILIDQATAEV-VHIDLGVA 1311 (1408)
Q Consensus 1284 LgLGDRH~~NILld~~tG~v-vHIDfg~~ 1311 (1408)
+==||=||+|||++ .|++ .-|||+.+
T Consensus 189 liHgD~~~~Nil~~--~~~~~~iIDf~~~ 215 (319)
T PRK05231 189 VIHADLFRDNVLFE--GDRLSGFIDFYFA 215 (319)
T ss_pred cCCCCCCCCcEEEE--CCceEEEEecccc
Confidence 34499999999999 3565 69999976
Done!