Query 000583
Match_columns 1407
No_of_seqs 217 out of 644
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 16:20:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000583.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_356-360//hhsearch_pdb/000583hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 108.8 5.4 101 224-362 4-107 (111)
2 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 107.7 6.0 91 287-408 7-98 (111)
3 3v43_A Histone acetyltransfera 1.0 1 1 106.0 7.5 100 287-408 5-106 (112)
4 2kwj_A Zinc finger protein DPF 1.0 1 1 103.3 6.4 97 289-408 3-102 (114)
5 2kwj_A Zinc finger protein DPF 1.0 1 1 95.3 3.2 93 227-354 1-105 (114)
6 3v43_A Histone acetyltransfera 1.0 1 1 92.4 4.7 96 226-355 4-110 (112)
7 4gne_A Histone-lysine N-methyl 1.0 1 1 89.6 5.5 74 226-328 14-88 (107)
8 4gne_A Histone-lysine N-methyl 1.0 1 1 85.9 6.4 87 288-422 16-102 (107)
9 3u5n_A E3 ubiquitin-protein li 1.0 1 1 78.0 3.3 51 223-285 3-53 (207)
10 3o36_A Transcription intermedi 1.0 1 1 74.2 3.6 28 226-254 3-30 (184)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=108.80 Aligned_cols=101 Identities=26% Similarity=0.718 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCCE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3478656634788932---1024643455447633365431124799734230248500467510133234236789898
Q 000583 224 ELFDSVCSFCDNGGDL---LCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSD 300 (1407)
Q Consensus 224 dl~DdVCaICedGGeL---LCCDGsC~RSFH~~CldGeeSfClsLGLTeaEvqa~esWiC~nCe~kQHqCFVCGklGSSD 300 (1407)
..++++|.+|+++|++ |+|+ .|.++||+.|+. +..+ .+ +...|+|++|. .|.+|++.+..
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~--------~~~~--~~-~~~~W~C~~C~----~C~~C~~~~~~- 66 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLD--------IAVT--PL-KRAGWQCPECK----VCQNCKQSGED- 66 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTT--------CCCC--TT-TSTTCCCTTTC----CCTTTCCCSCC-
T ss_pred CCCCCCCCCCCCCCCCCCCEECC-CCCCCCCHHHHC--------CCCC--CC-CCCCCCCCCCC----CCCCCCCCCCC-
T ss_conf 89979995789988875885999-999773967708--------8655--44-56686587678----26234765898-
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf 89998054307787899783221111235652788888767220699402799733226888
Q 000583 301 KETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQG 362 (1407)
Q Consensus 301 ksSGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH~C~vCKks 362 (1407)
..++.|. .|.+.||..|+.+.+.. +.. ..|+|| .|..|+.+
T Consensus 67 ----~~ll~Cd--~C~~~yH~~Cl~ppl~~------------~P~-g~W~C~--~C~~c~~g 107 (111)
T 2ysm_A 67 ----SKMLVCD--TCDKGYHTFCLQPVMKS------------VPT-NGWKCK--NCRICISG 107 (111)
T ss_dssp ----TTEEECS--SSCCEEEGGGSSSCCSS------------CCS-SCCCCH--HHHCCSCS
T ss_pred ----CCEEECC--CCCCHHHHHHCCCCCCC------------CCC-CCCCCC--CCCCCCCC
T ss_conf ----7765899--99808869865876566------------889-882992--88272878
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=107.71 Aligned_cols=91 Identities=30% Similarity=0.714 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCC-CCCCCCCCCCC
Q ss_conf 33234236789898899980543077878997832211112356527888887672206994027997-33226888778
Q 000583 287 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-KCCICKQGENK 365 (1407)
Q Consensus 287 QHqCFVCGklGSSDksSGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH-~C~vCKkseDk 365 (1407)
...|.+|+..|.. .+++.|. .|++.||+.|+.....+ + ....|.||.+ .|.+|+..++.
T Consensus 7 ~~~C~~C~~~g~~-----~~ll~C~--~C~~~~H~~Cl~~~~~~------------~-~~~~W~C~~C~~C~~C~~~~~~ 66 (111)
T 2ysm_A 7 GANCAVCDSPGDL-----LDQFFCT--TCGQHYHGMCLDIAVTP------------L-KRAGWQCPECKVCQNCKQSGED 66 (111)
T ss_dssp CSCBTTTCCCCCT-----TTSEECS--SSCCEECTTTTTCCCCT------------T-TSTTCCCTTTCCCTTTCCCSCC
T ss_pred CCCCCCCCCCCCC-----CCCEECC--CCCCCCCHHHHCCCCCC------------C-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7999578998887-----5885999--99977396770886554------------4-5668658767826234765898
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7887860424658821124778987544210012433454333
Q 000583 366 ADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 408 (1407)
Q Consensus 366 t~segQLIkCdRCPkAYHlkCLPppIsF~~~~~E~Ip~RAW~C 408 (1407)
.+|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 67 ----~~ll~Cd~C~~~yH~~Cl~ppl~-------~~P~g~W~C 98 (111)
T 2ysm_A 67 ----SKMLVCDTCDKGYHTFCLQPVMK-------SVPTNGWKC 98 (111)
T ss_dssp ----TTEEECSSSCCEEEGGGSSSCCS-------SCCSSCCCC
T ss_pred ----CCEEECCCCCCHHHHHHCCCCCC-------CCCCCCCCC
T ss_conf ----77658999980886986587656-------688988299
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=106.03 Aligned_cols=100 Identities=19% Similarity=0.498 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCC-CCCCCCCCCC
Q ss_conf 3323423678989889-9980543077878997832211112356527888887672206994027997-3322688877
Q 000583 287 QHQCFACGKLGSSDKE-TGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-KCCICKQGEN 364 (1407)
Q Consensus 287 QHqCFVCGklGSSDks-SGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH-~C~vCKkseD 364 (1407)
.+.|.+|...+..++. .+++|+.|. .|++.||+.|+...+ ++...+. ...|.||.+ .|.+|+..++
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~---------~~~~~~~-~~~W~C~~C~~C~vC~~~~~ 72 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSP---------ELTVRVK-ALRWQCIECKTCSSCRDQGK 72 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCH---------HHHHHHH-TSCCCCTTTCCBTTTCCCCC
T ss_pred CCCCCCCCCCHHHCCCCCCHHCEEHH--HCCCCCCCCHHCCCH---------HHHHHHH-CCCCCCCCCCCCCCCCCCCC
T ss_conf 76131038933427689911163753--449988970353888---------9998754-24653011775446668688
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87887860424658821124778987544210012433454333
Q 000583 365 KADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 408 (1407)
Q Consensus 365 kt~segQLIkCdRCPkAYHlkCLPppIsF~~~~~E~Ip~RAW~C 408 (1407)
+ +.+|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 73 ~---~~~ll~Cd~C~~~yH~~Cl~p~l~-------~~P~~~W~C 106 (112)
T 3v43_A 73 N---ADNMLFCDSCDRGFHMECCDPPLT-------RMPKGMWIC 106 (112)
T ss_dssp T---TCCCEECTTTCCEECGGGCSSCCS-------SCCSSCCCC
T ss_pred C---CCCEEECCCCCCEEECCCCCCCCC-------CCCCCCEEC
T ss_conf 8---565687489989156635899989-------899988579
No 4
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=103.28 Aligned_cols=97 Identities=26% Similarity=0.567 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCC-CCCCCCCCCCC
Q ss_conf 23423678989889--9980543077878997832211112356527888887672206994027997-33226888778
Q 000583 289 QCFACGKLGSSDKE--TGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-KCCICKQGENK 365 (1407)
Q Consensus 289 qCFVCGklGSSDks--SGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH-~C~vCKkseDk 365 (1407)
.|.+|...+..++. .+.+|+.|. .|++.||+.|+..... +...+. ...|.||.+ .|.+|+...+.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~---------~~~~~~-~~~W~C~~C~~C~~C~~~~~~ 70 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLN---------MTEAVK-TYKWQCIECKSCILCGTSEND 70 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHH---------HHHHHH-HTTCCCGGGCCCTTTTCCTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEC--CCCCCCCHHHCCCHHH---------HHHCCC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 0865889753444679999986929--8998323213878466---------431168-775175662733756346888
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7887860424658821124778987544210012433454333
Q 000583 366 ADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 408 (1407)
Q Consensus 366 t~segQLIkCdRCPkAYHlkCLPppIsF~~~~~E~Ip~RAW~C 408 (1407)
+.|+.|+.|+++||..||.|++. .+|.+.|.|
T Consensus 71 ----~~ll~Cd~C~~~yH~~Cl~ppl~-------~~P~g~W~C 102 (114)
T 2kwj_A 71 ----DQLLFCDDCDRGYHMYCLNPPVA-------EPPEGSWSC 102 (114)
T ss_dssp ----TTEEECSSSCCEEETTTSSSCCS-------SCCSSCCCC
T ss_pred ----CCEEECCCCCCCCCCCCCCCCCC-------CCCCCCEEC
T ss_conf ----74577489894102504598746-------788978199
No 5
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=95.31 Aligned_cols=93 Identities=29% Similarity=0.631 Sum_probs=68.8
Q ss_pred CCCCCCCCCC----------CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8656634788----------9321024643455447633365431124799734--230248500467510133234236
Q 000583 227 DSVCSFCDNG----------GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKD--EVEAMLNFFCKNCEYKQHQCFACG 294 (1407)
Q Consensus 227 DdVCaICedG----------GeLLCCDGsC~RSFH~~CldGeeSfClsLGLTea--Evqa~esWiC~nCe~kQHqCFVCG 294 (1407)
.++|.+|..+ ++||+|+ .|.++||+.|+ +++.. +..+...|+|++|. .|.+|+
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~~C~ 65 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCL----------QFTLNMTEAVKTYKWQCIECK----SCILCG 65 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTT----------TCCHHHHHHHHHTTCCCGGGC----CCTTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCHHHC----------CCHHHHHHCCCCCCCCCCCCC----CCCCCC
T ss_conf 980865889753444679999986929-89983232138----------784664311687751756627----337563
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCC
Q ss_conf 789898899980543077878997832211112356527888887672206994027997
Q 000583 295 KLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH 354 (1407)
Q Consensus 295 klGSSDksSGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH 354 (1407)
..+. ..+++.|. .|.+.||..|+.+.+.. +.. ..|.||.|
T Consensus 66 ~~~~-----~~~ll~Cd--~C~~~yH~~Cl~ppl~~------------~P~-g~W~C~~C 105 (114)
T 2kwj_A 66 TSEN-----DDQLLFCD--DCDRGYHMYCLNPPVAE------------PPE-GSWSCHLC 105 (114)
T ss_dssp CCTT-----TTTEEECS--SSCCEEETTTSSSCCSS------------CCS-SCCCCHHH
T ss_pred CCCC-----CCCEEECC--CCCCCCCCCCCCCCCCC------------CCC-CCEECCCC
T ss_conf 4688-----87457748--98941025045987467------------889-78199241
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=92.36 Aligned_cols=96 Identities=25% Similarity=0.635 Sum_probs=70.5
Q ss_pred CCCCCCCCCC---------CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7865663478---------89321024643455447633365431124799734--230248500467510133234236
Q 000583 226 FDSVCSFCDN---------GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKD--EVEAMLNFFCKNCEYKQHQCFACG 294 (1407)
Q Consensus 226 ~DdVCaICed---------GGeLLCCDGsC~RSFH~~CldGeeSfClsLGLTea--Evqa~esWiC~nCe~kQHqCFVCG 294 (1407)
...+|.+|.. +++||.|+ .|.++||+. | |+++.. ...+...|+|++|. .|.+|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~--------C--l~~~~~~~~~~~~~~W~C~~C~----~C~vC~ 68 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPS--------C--LKFSPELTVRVKALRWQCIECK----TCSSCR 68 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHH--------H--HTCCHHHHHHHHTSCCCCTTTC----CBTTTC
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHH-HCCCCCCCC--------H--HCCCHHHHHHHHCCCCCCCCCC----CCCCCC
T ss_conf 676131038933427689911163753-449988970--------3--5388899987542465301177----544666
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 7898988999805430778789978322111123565278888876722069940279973
Q 000583 295 KLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHK 355 (1407)
Q Consensus 295 klGSSDksSGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH~ 355 (1407)
..|.. ..+++.|. .|.+.||..|+.+.+.. +.. ..|.||.+.
T Consensus 69 ~~~~~----~~~ll~Cd--~C~~~yH~~Cl~p~l~~------------~P~-~~W~C~~C~ 110 (112)
T 3v43_A 69 DQGKN----ADNMLFCD--SCDRGFHMECCDPPLTR------------MPK-GMWICQICR 110 (112)
T ss_dssp CCCCT----TCCCEECT--TTCCEECGGGCSSCCSS------------CCS-SCCCCTTTS
T ss_pred CCCCC----CCCEEECC--CCCCEEECCCCCCCCCC------------CCC-CCEECCCCC
T ss_conf 86888----56568748--99891566358999898------------999-885797878
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=89.65 Aligned_cols=74 Identities=27% Similarity=0.640 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7865663478893210246-434554476333654311247997342302485004675101332342367898988999
Q 000583 226 FDSVCSFCDNGGDLLCCEG-RCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETG 304 (1407)
Q Consensus 226 ~DdVCaICedGGeLLCCDG-sC~RSFH~~CldGeeSfClsLGLTeaEvqa~esWiC~nCe~kQHqCFVCGklGSSDksSG 304 (1407)
.+++|.+|.++|+||+||. .|+++||+. | |+++.. +.+.|+|+.|. |.+|++..
T Consensus 14 ~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~--------C--l~L~~~---P~g~W~Cp~c~-----C~~C~k~~------- 68 (107)
T 4gne_A 14 HEDYCFQCGDGGELVMCDKKDCPKAYHLL--------C--LNLTQP---PYGKWECPWHQ-----CDECSSAA------- 68 (107)
T ss_dssp SCSSCTTTCCCSEEEECCSTTCCCEECTG--------G--GTCSSC---CSSCCCCGGGB-----CTTTCSBC-------
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCC--------C--CCCCCC---CCCCEECCCCC-----CCCCCCCC-------
T ss_conf 97999847997847577999999265225--------1--868757---99888898999-----88177989-------
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 805430778789978322111123
Q 000583 305 AEVFPCVSATCGHFYHPHCVSKLL 328 (1407)
Q Consensus 305 AELLkCsvasCGKFYHPsCIa~ll 328 (1407)
-+.|. .|++.||..|+...+
T Consensus 69 --~~~C~--~Cp~sfC~~c~~g~l 88 (107)
T 4gne_A 69 --VSFCE--FCPHSFCKDHEKGAL 88 (107)
T ss_dssp --CEECS--SSSCEECTTTCTTSC
T ss_pred --CCCCC--CCCCCHHHHCCCCCC
T ss_conf --86747--787101121158731
No 8
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=85.92 Aligned_cols=87 Identities=23% Similarity=0.573 Sum_probs=69.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 32342367898988999805430778789978322111123565278888876722069940279973322688877878
Q 000583 288 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKAD 367 (1407)
Q Consensus 288 HqCFVCGklGSSDksSGAELLkCsvasCGKFYHPsCIa~ll~pvde~~ateLekkIaaG~sF~CPlH~C~vCKkseDkt~ 367 (1407)
..|++|+.. ++|+.|....|.+.||..||.... +.. ..|.||.|.|..|++..
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~Cl~L~~--------------~P~-g~W~Cp~c~C~~C~k~~---- 68 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLLCLNLTQ--------------PPY-GKWECPWHQCDECSSAA---- 68 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTGGGTCSS--------------CCS-SCCCCGGGBCTTTCSBC----
T ss_pred CCCCCCCCC--------CCEEEECCCCCCCCCCCCCCCCCC--------------CCC-CCEECCCCCCCCCCCCC----
T ss_conf 999847997--------847577999999265225186875--------------799-88889899988177989----
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 8786042465882112477898754421001243345433334798365735687
Q 000583 368 SDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEGLLPNHRILIYCLKH 422 (1407)
Q Consensus 368 segQLIkCdRCPkAYHlkCLPppIsF~~~~~E~Ip~RAW~CLLsncRILIyCpkH 422 (1407)
-+.|..||.|||.+|++..+. ..+...|.| |..|
T Consensus 69 ----~~~C~~Cp~sfC~~c~~g~l~-------~~~~~~~~c----------~~~~ 102 (107)
T 4gne_A 69 ----VSFCEFCPHSFCKDHEKGALV-------PSALEGRLC----------CSEH 102 (107)
T ss_dssp ----CEECSSSSCEECTTTCTTSCE-------ECTTTTCEE----------CTTS
T ss_pred ----CCCCCCCCCCHHHHCCCCCCE-------ECCCCCCEE----------CCCC
T ss_conf ----867477871011211587311-------027889666----------6778
No 9
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=77.96 Aligned_cols=51 Identities=37% Similarity=0.815 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 234786566347889321024643455447633365431124799734230248500467510
Q 000583 223 DELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 285 (1407)
Q Consensus 223 ddl~DdVCaICedGGeLLCCDGsC~RSFH~~CldGeeSfClsLGLTeaEvqa~esWiC~nCe~ 285 (1407)
++.++++|.+|+++|+||+|++ |.++||..|+ .++++. + +.+.|+|+.|..
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl--------~p~l~~--~-p~~~W~C~~C~~ 53 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEK-CPKVFHLTCH--------VPTLLS--F-PSGDWICTFCRD 53 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSS-SSCEECTTTS--------SSCCSS--C-CSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCC--------CCCCCC--C-CCCCEEECCEEC
T ss_conf 7888898988899993677699-9984387158--------999888--8-998878684268
No 10
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=74.24 Aligned_cols=28 Identities=46% Similarity=1.176 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 78656634788932102464345544763
Q 000583 226 FDSVCSFCDNGGDLLCCEGRCLRSFHATI 254 (1407)
Q Consensus 226 ~DdVCaICedGGeLLCCDGsC~RSFH~~C 254 (1407)
++++|.+|+++|+||||++ |.++||..|
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~-C~~~~H~~C 30 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEK-CPKVFHLSC 30 (184)
T ss_dssp SCSSCTTTCCCSSCEECSS-SSCEECTTT
T ss_pred CCCCCCCCCCCCEEEECCC-CCCCCCCCC
T ss_conf 9995411799990566299-995308113
Done!