BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000584
(1407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55FD6|Y8158_DICDI PHD finger-containing protein DDB_G0268158 OS=Dictyostelium
discoideum GN=DDB_G0268158 PE=4 SV=1
Length = 688
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 212 HDTEEDESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFH-ATIDAGEESHCASLGLTK- 269
++T +D+ + ++VC+FC+ G+LL C+G CLRSFH + + A + +S ++
Sbjct: 121 NETNDDDKPKRPRKNEAVCTFCEKPGELLMCDGLCLRSFHISCLKARNLYNPSSSSISPV 180
Query: 270 DEVEAMLNFFCKNCEYKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLL 329
++ + + C +C Q+ CF+C K G G ++ C CG FYH C
Sbjct: 181 TTIDGTVRWECNDCVSSQNSCFSCKKRGI----IGIDLMKCKVHQCGKFYHYKC------ 230
Query: 330 RDDEVAADQLAKSI-IAGESFTCPLHKCCICK-QGENKADSDLQFAVCRRCPKAYHRKCL 387
VA +LAK I F CPLH C +C+ G+ K Q C RCP AYH C+
Sbjct: 231 ----VADYKLAKLINTKTPRFNCPLHYCSVCEVSGDGK-----QSVHCFRCPTAYHVICM 281
Query: 388 PRKIAFEDKLEE 399
+ K E
Sbjct: 282 QPGVKMLTKTRE 293
>sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1
PE=1 SV=2
Length = 1439
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 68/159 (42%), Gaps = 34/159 (21%)
Query: 227 DSVCSFCDNGGD-LLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 285
D+VC C+ GD L+ CEG C R FH LGLT +F C+ CE
Sbjct: 701 DTVCQVCEKAGDCLVACEGECCRHFHVEC----------LGLT---AVPEGHFTCEECET 747
Query: 286 KQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIA 345
QH CF+C K +G +V C + CG FYH CV K +I
Sbjct: 748 GQHPCFSC-------KVSGKDVKRCSVSVCGKFYHEACVRK------------FPTAIFE 788
Query: 346 GESFTCPLHKCCICKQGEN-KADSDLQFAVCRRCPKAYH 383
+ F CP H C C ++ S + C RCP AYH
Sbjct: 789 SKGFRCPQHCCSSCSMEKDIHKASKGRMMRCLRCPVAYH 827
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Mus musculus GN=Nsd1 PE=1 SV=1
Length = 2588
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 225 LFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 284
L ++VC C+ G+LL CE +C +FH LGL + F C C
Sbjct: 1439 LKENVCQNCEKLGELLLCEAQCCGAFHLEC----------LGLPE---MPRGKFICNECH 1485
Query: 285 YKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSII 344
H CF C K++G +V C+ CG FYH CV K ++
Sbjct: 1486 TGIHTCFVC-------KQSGEDVKRCLLPLCGKFYHEECVQK------------YPPTVT 1526
Query: 345 AGESFTCPLHKCCICKQGE--NKADSDLQFAVCRRCPKAYH 383
+ F CPLH C C N + S + C RCP AYH
Sbjct: 1527 QNKGFRCPLHICITCHAANPANVSASKGRLMRCVRCPVAYH 1567
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Homo sapiens GN=NSD1 PE=1 SV=1
Length = 2696
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 225 LFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 284
L ++VC C+ G+LL CE +C +FH LGLT+ F C C
Sbjct: 1541 LKENVCQNCEKLGELLLCEAQCCGAFHLEC----------LGLTE---MPRGKFICNECR 1587
Query: 285 YKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSII 344
H CF C K++G +V C+ CG FYH CV K +++
Sbjct: 1588 TGIHTCFVC-------KQSGEDVKRCLLPLCGKFYHEECVQK------------YPPTVM 1628
Query: 345 AGESFTCPLHKCCICKQGE--NKADSDLQFAVCRRCPKAYH 383
+ F C LH C C N + S + C RCP AYH
Sbjct: 1629 QNKGFRCSLHICITCHAANPANVSASKGRLMRCVRCPVAYH 1669
>sp|Q8BVE8|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1
PE=1 SV=2
Length = 1365
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 62/157 (39%), Gaps = 34/157 (21%)
Query: 229 VCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQH 288
VC C+ G LL CEG C +FH A LGL++ F C C H
Sbjct: 669 VCQLCEKTGSLLLCEGPCCGAFHL----------ACLGLSR---RPEGRFTCTECASGIH 715
Query: 289 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGES 348
CF C KE+ EV CV CG FYH CV K L ++
Sbjct: 716 SCFVC-------KESKMEVKRCVVNQCGKFYHEACVKKYPL------------TVFESRG 756
Query: 349 FTCPLHKCCICKQGE--NKADSDLQFAVCRRCPKAYH 383
F CPLH C C N S + C RCP AYH
Sbjct: 757 FRCPLHSCMSCHASNPSNPRPSKGKMMRCVRCPVAYH 793
>sp|O96028|NSD2_HUMAN Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1
PE=1 SV=1
Length = 1365
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 62/157 (39%), Gaps = 34/157 (21%)
Query: 229 VCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQH 288
VC C+ G LL CEG C +FH A LGL++ F C C H
Sbjct: 669 VCQLCEKPGSLLLCEGPCCGAFHL----------ACLGLSR---RPEGRFTCSECASGIH 715
Query: 289 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGES 348
CF C KE+ +V CV CG FYH CV K L ++
Sbjct: 716 SCFVC-------KESKTDVKRCVVTQCGKFYHEACVKKYPL------------TVFESRG 756
Query: 349 FTCPLHKCCICKQGE--NKADSDLQFAVCRRCPKAYH 383
F CPLH C C N S + C RCP AYH
Sbjct: 757 FRCPLHSCVSCHASNPSNPRPSKGKMMRCVRCPVAYH 793
>sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1
PE=1 SV=1
Length = 1437
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 65/159 (40%), Gaps = 34/159 (21%)
Query: 227 DSVCSFCDNGGD-LLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 285
D+VC C++ GD L+ CEG C + FH C L D F C C+
Sbjct: 701 DTVCQICESSGDSLIPCEGECCKHFHL--------ECLGLASLPDS-----KFICMECKT 747
Query: 286 KQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIA 345
QH CF+C K +G +V C CG FYH CV K +I
Sbjct: 748 GQHPCFSC-------KVSGKDVKRCSVGACGKFYHEACVRK------------FPTAIFE 788
Query: 346 GESFTCPLHKCCICKQGEN-KADSDLQFAVCRRCPKAYH 383
+ F CP H C C ++ S + C RCP AYH
Sbjct: 789 SKGFRCPQHCCSACSMEKDIHKASKGRMMRCLRCPVAYH 827
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3
PE=2 SV=2
Length = 4903
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 75/201 (37%), Gaps = 55/201 (27%)
Query: 230 CSFCDN-GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY--- 285
C+FC + G + CCE +C + +H AG G +D +FF E+
Sbjct: 284 CAFCKHLGATIKCCEEKCTQMYHYPCAAG-------AGTFQD----FSHFFLLCPEHIDQ 332
Query: 286 ------KQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQL 339
+ C C G + F C TCG YH C+ ++A L
Sbjct: 333 APERSKEDANCAVCDSPGDL-----LDQFFCT--TCGQHYHGMCL--------DIAVTPL 377
Query: 340 AKSIIAGESFTCPLHKCCI-CKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLE 398
++ + CP K C CKQ + D + VC C K YH CL +
Sbjct: 378 KRA-----GWQCPECKVCQNCKQ----SGEDSKMLVCDTCDKGYHTFCL-------QPVM 421
Query: 399 EGIITRAWEGLLPNHRILIYC 419
+ + T W+ N RI I C
Sbjct: 422 KSVPTNGWK--CKNCRICIEC 440
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 286 KQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIA 345
+Q C CG G GAE + CG YHP+CVS + + ++
Sbjct: 949 QQDMCVVCGSFGQ-----GAEGRLLACSQCGQCYHPYCVSIKITK------------VVL 991
Query: 346 GESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCL 387
+ + C +C +C + KA + +C C +YH CL
Sbjct: 992 SKGWRC--LECTVC-EACGKATDPGRLLLCDDCDISYHTYCL 1030
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 47/197 (23%)
Query: 230 CSFCDN-GGDLLCCEGRCLRSFHATIDAG-----EESHCASLGLTKDEVEAMLNFFCKNC 283
C+FC + G + CCE +C + +H AG + SH L + + NC
Sbjct: 285 CAFCKHLGATIKCCEEKCTQMYHYPCAAGAGTFQDFSHIFLLCPEHIDQAPERSKEDANC 344
Query: 284 EYKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSI 343
C + G L + F C TCG YH C+ ++A L ++
Sbjct: 345 AV----CDSPGDL--------LDQFFCT--TCGQHYHGMCL--------DIAVTPLKRA- 381
Query: 344 IAGESFTCPLHKCCI-CKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGII 402
+ CP K C CKQ + D + VC C K YH CL + + +
Sbjct: 382 ----GWQCPECKVCQNCKQ----SGEDSKMLVCDTCDKGYHTFCL-------QPVMKSVP 426
Query: 403 TRAWEGLLPNHRILIYC 419
T W+ N RI I C
Sbjct: 427 TNGWK--CKNCRICIEC 441
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 287 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAG 346
Q C CG G GAE + CG YHP+CVS + + ++
Sbjct: 957 QDMCVVCGSFGQ-----GAEGRLLACSQCGQCYHPYCVSIKITK------------VVLS 999
Query: 347 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCL 387
+ + C +C +C + KA + +C C +YH CL
Sbjct: 1000 KGWRC--LECTVC-EACGKATDPGRLLLCDDCDISYHTYCL 1037
>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1
SV=3
Length = 1127
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 217 DESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHAT 253
D +N++D+ + C+ C NGGDLLCCE +C + FH T
Sbjct: 877 DGNNKDDDPNEDWCAVCQNGGDLLCCE-KCPKVFHLT 912
>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24
PE=1 SV=1
Length = 1051
Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 218 ESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHAT 253
E+ +ED+ + C+ C NGG+LLCCE +C + FH T
Sbjct: 818 ETRKEDDPNEDWCAVCQNGGELLCCE-KCPKVFHLT 852
>sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1
SV=2
Length = 1142
Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 217 DESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHAT 253
D ++++D+ + C+ C NGGDLLCCE +C + FH T
Sbjct: 892 DGNSKDDDPNEDWCAVCQNGGDLLCCE-KCPKVFHLT 927
>sp|O14686|MLL2_HUMAN Histone-lysine N-methyltransferase MLL2 OS=Homo sapiens GN=MLL2
PE=1 SV=2
Length = 5537
Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 230 CSFCDN-GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY-KQ 287
CS C G + C C R +H S L+ ++ + + Y ++
Sbjct: 172 CSHCTRLGASIPCRSPGCPRLYHFPCATASGSF-----LSMKTLQLLCPEHSEGAAYLEE 226
Query: 288 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGE 347
+C C G ++F C S CGH YH C+ D + A + A
Sbjct: 227 ARCAVCEGPGEL-----CDLFFCTS--CGHHYHGACL------DTALTARKRA------- 266
Query: 348 SFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCL 387
+ CP +C +C Q K +D + VC C K YH CL
Sbjct: 267 GWQCP--ECKVC-QACRKPGNDSKMLVCETCDKGYHTFCL 303
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 287 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAG 346
Q C CG G GAE + C YHP+CV+ + + + + + I+
Sbjct: 1377 QDMCVVCGSFGR-----GAEGHLLACSQCSQCYHPYCVNSKITKVMLLKGWRCVECIV-- 1429
Query: 347 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCL 387
C +C Q + + + +C C +YH CL
Sbjct: 1430 ---------CEVCGQASDPS----RLLLCDDCDISYHTYCL 1457
>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24
PE=1 SV=3
Length = 1050
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 218 ESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHAT 253
E+ +ED+ + C+ C NGG+LLCCE +C + FH +
Sbjct: 817 ETRKEDDPNEDWCAVCQNGGELLCCE-KCPKVFHLS 851
>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1
SV=1
Length = 1091
Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 230 CSFCDNGGDLLCCEGRCLRSFHAT 253
C+ C NGGDLLCCE +C + FH T
Sbjct: 853 CAVCQNGGDLLCCE-KCPKVFHLT 875
>sp|Q6PDK2|MLL2_MOUSE Histone-lysine N-methyltransferase MLL2 OS=Mus musculus GN=Mll2
PE=1 SV=2
Length = 5588
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 314 TCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKADSDLQFA 373
+CGH YH C+ D + A + A S+ CP +C +C Q K +D +
Sbjct: 246 SCGHHYHGACL------DTALTARKRA-------SWQCP--ECKVC-QSCRKPGNDSKML 289
Query: 374 VCRRCPKAYHRKCLPRKIAFED 395
VC C K YH CL K ED
Sbjct: 290 VCETCDKGYHTFCL--KPPMED 309
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 287 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAG 346
Q C CG G GAE + C YHP+CV+ + + + + + I+
Sbjct: 1333 QDMCVVCGSFGR-----GAEGHLLACSQCSQCYHPYCVNSKITKVMLLKGWRCVECIV-- 1385
Query: 347 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCL 387
C +C Q + + + +C C +YH CL
Sbjct: 1386 ---------CEVCGQASDPS----RLLLCDDCDISYHTYCL 1413
>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2
SV=4
Length = 1216
Score = 37.7 bits (86), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 227 DSVCSFCDNGGDLLCCEGRCLRSFH--------ATIDAGEESHCASLGLTKDEVEAMLNF 278
+ C+ C NGG+LLCC+ RC + FH + GE LT+ E+E +
Sbjct: 970 EDFCAVCLNGGELLCCD-RCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEME----Y 1024
Query: 279 FCKNCEYKQ 287
C+N Y Q
Sbjct: 1025 DCENACYNQ 1033
>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2
SV=1
Length = 1163
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 219 SNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHAT 253
+ +ED+ + C+ C NGG+LLCC+ C + FH T
Sbjct: 913 AGKEDDPNEDWCAVCQNGGELLCCD-HCPKVFHIT 946
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 290 CFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESF 349
CF C G ++ C C YHP C+ + DE AK +
Sbjct: 113 CFICFD--------GGDLVLCDRRNCPKAYHPACIKR-----DEAFFRTTAK-------W 152
Query: 350 TCPLHKCCICKQGENKADSDLQFAVCRRCPK 380
C H C C++ + F+VC+RC K
Sbjct: 153 NCGWHICGTCQKASSYMCYTCTFSVCKRCIK 183
>sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1
Length = 1193
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 529 GNVKSLSVQVDRSSSVDSKKTSLGERLYAAFVTEGTEQTKF--GKQDNSDRETSRTVTVK 586
G V++L Q+ +++++ SL + Y + G E + + N+ ++ T V+
Sbjct: 1066 GTVRTLKDQI----ALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVE 1121
Query: 587 PLRKKLISELPSLDEDSKRRLSSLMKDAASSVRMEEIL 624
P + +SE LDE +RRL+ L +A SVRM E L
Sbjct: 1122 PWVYQRLSETFVLDEAMRRRLAELNPEA--SVRMAERL 1157
>sp|Q65S78|AROA_MANSM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=aroA PE=3 SV=1
Length = 433
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 654 VEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLAPFLHGMR 705
V + ALK+L V+ S ED K+VCE + L + F W+N L ++L MR
Sbjct: 50 VRHMLNALKQLGVNYSLSED-KSVCEVQGLGKAFAWQNGLALFLGNAGTAMR 100
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1
SV=3
Length = 1242
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 230 CSFCDNGGDLLCCEGRCLRSFH--------ATIDAGEESHCASLGLTKDEVEAMLNFFCK 281
C+ C NGG+LLCC+ RC + +H + GE LT+ E+E + C+
Sbjct: 999 CAVCINGGELLCCD-RCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEME----YDCE 1053
Query: 282 NCEY 285
N Y
Sbjct: 1054 NARY 1057
>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1
Length = 545
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 210 MVHDTEEDESNEEDELFDSVCSFCDNGGDLLCCEGRCLRSFH 251
+ D + + NE++ C+ C +GG+L+CC+G C R+FH
Sbjct: 285 LPSDPQLHQKNEDE------CAVCRDGGELICCDG-CPRAFH 319
>sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1
Length = 552
Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 230 CSFCDNGGDLLCCEGRCLRSFH 251
C+ C +GG+L+CC+G C R+FH
Sbjct: 301 CAVCHDGGELICCDG-CPRAFH 321
>sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
Length = 261
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 733 GDMIVDFCCGANDFSCLMKKKLDETGK 759
GD ++D CCG+ D + L+ +K+ TGK
Sbjct: 74 GDYVLDLCCGSGDLAFLLSEKVGSTGK 100
>sp|Q04570|AROA_PASMU 3-phosphoshikimate 1-carboxyvinyltransferase OS=Pasteurella
multocida (strain Pm70) GN=aroA PE=3 SV=2
Length = 440
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 628 KIPSTHAYASKSAVDKAITLGKVEGS-------VEAIRTALKKLDVDGSSIEDAKAVCEP 680
++P + + ++++ + A+ GK + V + ALK+L V ED K+VCE
Sbjct: 21 RLPGSKSLSNRALLLSALAKGKTTLTNLLDSDDVRHMLNALKELGVTYQLSED-KSVCEI 79
Query: 681 EVLSQIFKWKNKLKVYLAPFLHGMR 705
E L + F+W++ L ++L MR
Sbjct: 80 EGLGRAFEWQSGLALFLGNAGTAMR 104
>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenorhabditis elegans GN=rpm-1
PE=1 SV=1
Length = 3766
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 262 CASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDK-ETGAEVF-----------P 309
C + T +V N FC + +C C D + G +V P
Sbjct: 3471 CVNYAKTACQVMHTCNHFCGGIR-NEEECLPCMTCKREDAAQDGDDVCVICFTERLGAAP 3529
Query: 310 CVSATCGHFYHPHCVSKLLLR 330
C+ CGH +H HCV +L R
Sbjct: 3530 CIRLGCGHMFHFHCVRMILER 3550
>sp|Q6MEA9|NDK1_PARUW Nucleoside diphosphate kinase 1 OS=Protochlamydia amoebophila
(strain UWE25) GN=ndk1 PE=3 SV=2
Length = 141
Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 134 DFLSRFFCLYEVRPSQNDLVDHMD---LIKEALERDDVLAKSKFLVTFLEEKPTKRKLSD 190
D S+F+ +++ RP NDLV+ M ++ LE + +AK++ L+ + K
Sbjct: 45 DQASKFYAIHKDRPFYNDLVNFMSSGPVVVMVLEGNQAIAKNRELMGATDPK-------- 96
Query: 191 EVVQTKAMSGFIVDDMEEDM----VHDTEEDESNEEDELF 226
KA G + D E M VH ++ E+ EE+ LF
Sbjct: 97 -----KAEKGTLRADFAESMSRNAVHGSDSSETAEEEVLF 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,045,132
Number of Sequences: 539616
Number of extensions: 25657003
Number of successful extensions: 72637
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 72200
Number of HSP's gapped (non-prelim): 463
length of query: 1407
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1277
effective length of database: 121,419,379
effective search space: 155052546983
effective search space used: 155052546983
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)