Query 000585
Match_columns 1406
No_of_seqs 203 out of 301
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 17:26:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000585.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_356-360//hhsearch_pdb/000585hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 32.1 2.5 135 770-918 224-364 (802)
2 3n4p_A Terminase subunit UL89 1.0 1 1 17.9 1.9 54 259-323 142-195 (279)
3 2ysr_A DEP domain-containing p 1.0 1 1 17.8 1.3 30 266-295 9-38 (105)
4 2z86_A Chondroitin synthase; G 1.0 1 1 16.4 1.2 126 770-916 440-566 (625)
5 3f4m_A Tumor necrosis factor, 1.0 1 1 16.0 -4.2 10 347-356 97-106 (161)
6 2zpa_A Uncharacterized protein 1.0 1 1 15.5 -1.2 11 704-714 307-317 (671)
7 3fbx_A Putative phospholipase 1.0 1 1 15.4 0.7 15 866-880 530-544 (559)
8 3fgr_B Putative phospholipase 1.0 1 1 15.4 0.7 15 866-880 328-342 (357)
9 3fke_A Polymerase cofactor VP3 1.0 1 1 14.8 -8.0 15 395-409 20-34 (129)
10 1l6x_B Minimized B-domain of p 1.0 1 1 14.6 -0.6 21 791-811 1-21 (34)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=32.11 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=81.3
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCC-----CHHHHHHC
Q ss_conf 897757332011002454210047761228-998733205999842089988845850221021166-----01221000
Q 000585 770 GGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGS-----VSSLAWFM 843 (1406)
Q Consensus 770 EGKpeNQNHAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgs-----vssLa~fm 843 (1406)
.||+.|.|+++-.++||++-.+|..- .+ .++++ .+++.|+++. .+.+++.+-.+..++ .+.....
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L~--~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~- 294 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFLA--RTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRC- 294 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHHH--HHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTS-
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHH--HHHHHHHCCC----CEEEEECCEEEECCCHHHHHHHHHHHH-
T ss_conf 76368999999965999999999998--81858999--9999984099----859996567976785576544477651-
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEE
Q ss_conf 022025778777742055610000379832111012246873333111134133310222224683012564378
Q 000585 844 SNQETSFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQ 918 (1406)
Q Consensus 844 a~qE~sFvTl~QRvLA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLSEDIFaG~N~~lRgG~I~h~EYiQ 918 (1406)
......|-...++.... .....--|+-=++.|-....-||.... .++||..-++....+|.++.++.-..
T Consensus 295 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~~~ 364 (802)
T 4hg6_A 295 PPENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDRAM 364 (802)
T ss_dssp CCTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECCCE
T ss_conf 67899998888754764-388454266403249999970886788----80309999999997699599936887
No 2
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=17.87 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
Q ss_conf 12577768877679987126643356411113031135689999855686355128657899887
Q 000585 259 NKEKEEAKFAQMWNKIISSFREEDLISNREMDLLLVPYWADRDLDLIQWPPFLLASKIPIALDMA 323 (1406)
Q Consensus 259 ~~~~~~~rFa~~WNeII~sfReeDlIsdrE~~lL~~p~~~~~~~~~i~wP~FLla~ki~~Ald~A 323 (1406)
.++..|.+-|..-++.+.+.+. .+++.+. +.+.+ .|+||.|||..+=..|.|.-
T Consensus 142 SsQdsAVaIA~~i~~~~~~~~~--------~~~~FyH-~~d~~--~v~~PfylL~~eK~~Afe~F 195 (279)
T 3n4p_A 142 TNQAAAVRIACLIRQSVQSSTL--------IRVLFYH-TPDQN--HIEQPFYLMGRDKALAVEQF 195 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCC--------CEEEEEC-EEETT--TEEESCBCCSTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCEEEEE-CCCCC--CCCCCCHHHCCCHHHHHHHH
T ss_conf 4188999999999987642456--------6379984-17986--43087312064047999999
No 3
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=17.80 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf 887767998712664335641111303113
Q 000585 266 KFAQMWNKIISSFREEDLISNREMDLLLVP 295 (1406)
Q Consensus 266 rFa~~WNeII~sfReeDlIsdrE~~lL~~p 295 (1406)
|-..+||+||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCEECC
T ss_conf 178999999999975997532346889988
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=16.42 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCCCHHHHHHCCCCHH
Q ss_conf 897757332011002454210047761228-9987332059998420899888458502210211660122100002202
Q 000585 770 GGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQET 848 (1406)
Q Consensus 770 EGKpeNQNHAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~fma~qE~ 848 (1406)
.|+..+-|.++-.++||++-.+| +|..+ +++| ..+++.|++.. .+.+++.....+..+-..+.........
T Consensus 440 ~G~~~a~n~g~~~a~g~~i~~ld--~D~~~~~~~l--~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 511 (625)
T 2z86_A 440 KGIGSASNTAVRLCRGFYIGQLD--SDDFLEPDAV--ELCLDEFRKDL----SLACVYTTNRNIDREGNLISNGYNWPIY 511 (625)
T ss_dssp CCHHHHHHHHHHHCCSSEEEECC--TTCEECTTHH--HHHHHHHHHCT----TCSEEEEEEEEECTTSCEEEECCCCSSC
T ss_pred CCHHHHHHHHHHHCCCCEEEEEC--CCCCCCHHHH--HHHHHHHHHCC----CEEEEEEEEEEECCCCCEECCCCCCCCC
T ss_conf 89899999999856778799988--9766283599--99999998479----8139982048987999874167666657
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEE
Q ss_conf 57787777420556100003798321110122468733331111341333102222246830125643
Q 000585 849 SFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEY 916 (1406)
Q Consensus 849 sFvTl~QRvLA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLSEDIFaG~N~~lRgG~I~h~EY 916 (1406)
+- .. +...+-.||.=++.+-....-||....- ...||.--.......| ++.|..-
T Consensus 512 ~~----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~~---~~~eD~dl~~r~~~~g-~~~~~~~ 566 (625)
T 2z86_A 512 SR----EK-----LTSAMICHHFRMFTARAWNLTEGFNESI---SNAVDYDMYLKLSEVG-PFKHINK 566 (625)
T ss_dssp CH----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSSC---SSCHHHHHHHHHTTTS-CEEEEEE
T ss_pred CH----HH-----HHHCCCCCCEEEEEHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHC-CEEEECC
T ss_conf 88----89-----8535467746898899999728999736---8727999999999749-9998287
No 5
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=16.00 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=3.2
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 000585 347 VQECYASFKI 356 (1406)
Q Consensus 347 V~E~y~s~k~ 356 (1406)
..||-+.+..
T Consensus 97 L~ec~~lL~~ 106 (161)
T 3f4m_A 97 LTECRDVLLE 106 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 6
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=15.45 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=5.1
Q ss_pred CCCEEEEEECC
Q ss_conf 98289873001
Q 000585 704 PSLRVAYIDEV 714 (1406)
Q Consensus 704 P~LrVAYiDe~ 714 (1406)
|.++...++|+
T Consensus 307 ~~~~~~~L~~p 317 (671)
T 2zpa_A 307 PHLHRFELQQP 317 (671)
T ss_dssp TTCEEEECCSC
T ss_pred CCCCEEECCCC
T ss_conf 97767981576
No 7
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=1.00 E-value=1 Score=15.41 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=12.0
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 003798321110122
Q 000585 866 FHYGHPDVFDRLFHL 880 (1406)
Q Consensus 866 ~HYGHPDvfd~~F~~ 880 (1406)
.|+||||+||=-|..
T Consensus 530 ~H~G~Pd~~nF~~v~ 544 (559)
T 3fbx_A 530 LHMGQPDLWMFSPIR 544 (559)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 979999672778789
No 8
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=15.37 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=12.0
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 003798321110122
Q 000585 866 FHYGHPDVFDRLFHL 880 (1406)
Q Consensus 866 ~HYGHPDvfd~~F~~ 880 (1406)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 9
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=1.00 E-value=1 Score=14.82 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 643489999999999
Q 000585 395 ALPSLYEQCVELIEC 409 (1406)
Q Consensus 395 ~Lp~l~~~~~~L~~~ 409 (1406)
.||.-...|-+|+..
T Consensus 20 hLpG~~TaFH~Lvqv 34 (129)
T 3fke_A 20 HLPGFGTAFHQLVQV 34 (129)
T ss_dssp TSSSSSCHHHHHHHH
T ss_pred HCCCCCCHHHHHHHH
T ss_conf 089998459999999
No 10
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=1.00 E-value=1 Score=14.60 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 047761228998733205999
Q 000585 791 IDMNQDNYMEESLKMRNLLQE 811 (1406)
Q Consensus 791 IDmNQDnYlEEaLKmRNlL~E 811 (1406)
.|+-|.|-|=|.|+|.||-+|
T Consensus 1 ~~~~qQnaFYevLh~~nLtEe 21 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEE 21 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHH
T ss_pred CCHHHHHHHHHHHCCCCCCHH
T ss_conf 978999999999918987899
Done!