Query 000585
Match_columns 1406
No_of_seqs 203 out of 301
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 17:36:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000585.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_356-360//hhsearch_scop/000585hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 4.8 73 0.0053 5.8 1.8 49 757-815 84-135 (328)
2 d1x3aa1 a.240.1.1 (A:8-94) Syn 4.3 84 0.0061 5.3 -0.0 47 661-707 7-53 (87)
3 d2p62a1 e.67.1.1 (A:1-241) Hyp 3.6 1.1E+02 0.0077 4.6 1.6 69 762-835 33-102 (241)
4 d1dfma_ c.52.1.5 (A:) Restrict 3.4 1.1E+02 0.0082 4.4 3.2 54 772-830 120-173 (223)
5 d2yrka1 g.37.1.4 (A:8-55) Zinc 3.3 66 0.0048 6.2 -1.3 16 819-834 14-29 (48)
6 d1c3da_ a.102.4.4 (A:) C3D, a 3.2 1.2E+02 0.0089 4.1 0.2 11 624-634 240-250 (294)
7 d1n0ua4 d.58.11.1 (A:482-560) 2.8 1.5E+02 0.011 3.5 2.8 36 676-712 7-42 (79)
8 d1hzfa_ a.102.4.4 (A:) C4adg f 2.6 1.2E+02 0.009 4.1 -0.5 13 507-519 103-115 (326)
9 d1wlna1 b.26.1.2 (A:8-114) Afa 2.5 1.7E+02 0.012 3.1 1.9 51 746-797 12-73 (107)
10 d1r9wa_ d.89.1.2 (A:) Replicat 2.4 1.7E+02 0.012 3.0 0.3 22 894-919 41-62 (145)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.85 E-value=73 Score=5.80 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=31.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78874689964588977573320110024542100477---612289987332059998420
Q 000585 757 IYRIKLPGPAILGGGKPENQNHAIIFTRGEGLQTIDMN---QDNYMEESLKMRNLLQEFLKK 815 (1406)
Q Consensus 757 iYRIkLPG~piLGEGKpeNQNHAiIFtRGE~lQtIDmN---QDnYlEEaLKmRNlL~EF~~~ 815 (1406)
+.-|+.+. ..|.+...|.++-.++||++-.+|.- ..+++|+. ++.+++.
T Consensus 84 i~vi~~~~----n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l------~~~~~~~ 135 (328)
T d1xhba2 84 VHVIRMEQ----RSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPL------LARIKHD 135 (328)
T ss_dssp EEEEECSS----CCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHH------HHHHHHC
T ss_pred EEEEEECC----CCCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHH------HHHHHCC
T ss_conf 09997324----4321688789998631100220176556673699999------9999638
No 2
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.28 E-value=84 Score=5.35 Aligned_cols=47 Identities=15% Similarity=-0.046 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 89999888708641999753046688887520588999998599828
Q 000585 661 LWAQCQAVSDMKFTYVVSCQQYGTHKRSGDARAKDILRLMTTYPSLR 707 (1406)
Q Consensus 661 ~~~~~~~~a~~KFtyVVscQ~Yg~~k~~~d~~a~di~~Lm~~~P~Lr 707 (1406)
+.+++.++..-+=+|+-.+.....+...-|.+...|..|+..+|+|+
T Consensus 7 ~keqi~aLs~D~~tfl~~P~~~~~f~F~~d~~~~~i~~lL~~~~~L~ 53 (87)
T d1x3aa1 7 IQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLS 53 (87)
T ss_dssp HHHHHHHHHTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHCCHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCHHHH
T ss_conf 99999998279877623999645666017864999999985798999
No 3
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.60 E-value=1.1e+02 Score=4.60 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCC
Q ss_conf 68996458897757332011-002454210047761228998733205999842089988845850221021166
Q 000585 762 LPGPAILGGGKPENQNHAII-FTRGEGLQTIDMNQDNYMEESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGS 835 (1406)
Q Consensus 762 LPG~piLGEGKpeNQNHAiI-FtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgs 835 (1406)
+|-+-+++|+++|--||++. =.-|-++-.|..+-..-.--+|+ |.|.--+-. .-.|.++|+---|=+++
T Consensus 33 ~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v~---~~~v~~iGvA~DvDe~~ 102 (241)
T d2p62a1 33 LTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKLG---LLNVEEVYVVRDVDEGN 102 (241)
T ss_dssp CCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHHT---CCCEEEEEEEEESSSSS
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHHH---CCCHHEEEEEEECCCCH
T ss_conf 89766114432355663313433885899984788413778999--999999974---44611168887437607
No 4
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=3.43 E-value=1.1e+02 Score=4.40 Aligned_cols=54 Identities=26% Similarity=0.251 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCE
Q ss_conf 77573320110024542100477612289987332059998420899888458502210
Q 000585 772 KPENQNHAIIFTRGEGLQTIDMNQDNYMEESLKMRNLLQEFLKKHDGVRYPTILGVREH 830 (1406)
Q Consensus 772 KpeNQNHAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REh 830 (1406)
+.++-|-+||-|.| .+-+--|-|+|+|.+.--=+-|.+..-.+ -|+.|||.-|-
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d---vPi~~~gi~e~ 173 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD---VPIRLVGLIED 173 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC---SCEEEEEEECC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECCC
T ss_conf 02466569999624--34203461479999999998627363234---55555660572
No 5
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.31 E-value=66 Score=6.15 Aligned_cols=16 Identities=44% Similarity=0.933 Sum_probs=9.2
Q ss_pred CCCCEEEECCCEEECC
Q ss_conf 8884585022102116
Q 000585 819 VRYPTILGVREHIFTG 834 (1406)
Q Consensus 819 ~~~~tIlG~REhIFTg 834 (1406)
.+..+-+-+|+||||.
T Consensus 14 vKYs~~~SvrdHiFsk 29 (48)
T d2yrka1 14 VKYSARLSIRDHIFSK 29 (48)
T ss_dssp CCCCSSSCHHHHHTSH
T ss_pred EEEEEECCHHHHHHHH
T ss_conf 3430102167665229
No 6
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.20 E-value=1.2e+02 Score=4.12 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.0
Q ss_pred HHHHHHHHHHC
Q ss_conf 99998763402
Q 000585 624 KALELQAFLDM 634 (1406)
Q Consensus 624 ~ALkll~~lE~ 634 (1406)
.|+-|++.++.
T Consensus 240 ta~alla~~~~ 250 (294)
T d1c3da_ 240 TSYALLALLQL 250 (294)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999745
No 7
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.76 E-value=1.5e+02 Score=3.54 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.2
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9975304668888752058899999859982898730
Q 000585 676 VVSCQQYGTHKRSGDARAKDILRLMTTYPSLRVAYID 712 (1406)
Q Consensus 676 VVscQ~Yg~~k~~~d~~a~di~~Lm~~~P~LrVAYiD 712 (1406)
|+++-++.+.+...+.-.+.+..|.+..|+++| +.+
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v-~~~ 42 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YMS 42 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE-EEC
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEE-EEC
T ss_conf 799999989887999999999999975995799-874
No 8
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.61 E-value=1.2e+02 Score=4.07 Aligned_cols=13 Identities=0% Similarity=-0.018 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 6566878551024
Q 000585 507 LEAIRRISFFSNS 519 (1406)
Q Consensus 507 ~EArRRisFFanS 519 (1406)
.+..+++....+.
T Consensus 103 ~~~~~~~~~~l~~ 115 (326)
T d1hzfa_ 103 EKLQETSNWLLSQ 115 (326)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 6677679999998
No 9
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.48 E-value=1.7e+02 Score=3.11 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCC-----------CCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 742346643317887468996458897757-----------3320110024542100477612
Q 000585 746 SSETVQTLDQVIYRIKLPGPAILGGGKPEN-----------QNHAIIFTRGEGLQTIDMNQDN 797 (1406)
Q Consensus 746 ~~~~~~~~~~eiYRIkLPG~piLGEGKpeN-----------QNHAiIFtRGE~lQtIDmNQDn 797 (1406)
.+....+....+|+++ +|...+|-|+++. ..||.|-..++.+...|.+..|
T Consensus 12 ~dg~~~~~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 12 PDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CCCCCCCCCCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 9866688864899979-9987999987899849989965332199999724631995278886
No 10
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.42 E-value=1.7e+02 Score=3.02 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=0.0
Q ss_pred CCHHHHCCCCCCCCCCEEEEEEEEEE
Q ss_conf 41333102222246830125643783
Q 000585 894 LSEDIFAGFNSTLREGNVTHHEYIQV 919 (1406)
Q Consensus 894 LSEDIFaG~N~~lRgG~I~h~EYiQ~ 919 (1406)
++||++.+...+|+ .||+|+|+
T Consensus 41 v~~~l~ea~k~lLq----~hc~y~~~ 62 (145)
T d1r9wa_ 41 VNPTIAEGFKTLIQ----PFILYAHI 62 (145)
T ss_dssp ECHHHHHTHHHHHG----GGEEEEEE
T ss_pred ECHHHHHHHHHHHH----HHEEEEEE
T ss_conf 08899999999977----44127888
Done!