BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000586
(1403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 34/359 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 6 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 65
Query: 63 ISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRP 122
I +D L L RHA TSK+ A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 66 IKKDELALALARHA-TSKI---ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQ 121
Query: 123 NGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + +
Sbjct: 122 EAWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIR 179
Query: 183 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGA 238
RIAL V+ I++ +++ G I +FL++ A G
Sbjct: 180 RIALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGD 236
Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
L + G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 237 LTLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ--- 288
Query: 298 GKRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 355
PA++L L PH + D+ P K V F V FI + + S +++
Sbjct: 289 ---------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL 337
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 34/359 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 9 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 68
Query: 63 ISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRP 122
I +D L L RHA TSK+ A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 69 IKKDELALALARHA-TSKI---ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQ 124
Query: 123 NGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + +
Sbjct: 125 EAWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIR 182
Query: 183 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGA 238
RIAL V+ I++ +++ G I +FL++ A G
Sbjct: 183 RIALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGD 239
Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
L + G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 240 LTLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ--- 291
Query: 298 GKRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 355
PA++L L PH + D+ P K V F V FI + + S +++
Sbjct: 292 ---------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL 340
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 34/353 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 63 ISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRP 122
I +D L L RHA TSK+ A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 65 IKKDELALALARHA-TSKI---ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQ 120
Query: 123 NGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + +
Sbjct: 121 EAWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIR 178
Query: 183 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGA 238
RIAL V+ I++ +++ G I +FL++ A G
Sbjct: 179 RIALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGD 235
Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
L + G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 236 LTLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ--- 287
Query: 298 GKRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRS 349
PA++L L PH + D+ P K V F V FI + + S
Sbjct: 288 ---------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLS 330
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 171/353 (48%), Gaps = 34/353 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 63 ISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRP 122
I +D L L RHA TSK+ A +DD I + GFRGEAL SIS VS L + ++ +
Sbjct: 65 IKKDELALALARHA-TSKI---ASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQ 120
Query: 123 NGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVL 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + +
Sbjct: 121 EAWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIR 178
Query: 183 RIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGA 238
RIAL V+ I++ +++ G I +FL++ A G
Sbjct: 179 RIALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGD 235
Query: 239 LEISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLK 297
L + G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 236 LTLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ--- 287
Query: 298 GKRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRS 349
PA++L L PH + D+ P K V F V FI + + S
Sbjct: 288 ---------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLS 330
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 27/354 (7%)
Query: 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDG 60
G I RL E V N + +G V+ ++E++ N +DA +T + V V +++ D+G
Sbjct: 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 66
Query: 61 SGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHG 120
+GI ++ L ++ ER TSKL +D I T+GFRGEALASIS V+ + I TK
Sbjct: 67 TGIRKEDLDIVCERFT-TSKL---QSFEDLASISTYGFRGEALASISHVAHVTITTKTAD 122
Query: 121 RPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKC 180
YR K L + GT + DLFYN RRK ++ +P + + +
Sbjct: 123 GKCAYRASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALK-NPSEEYGKILEV 180
Query: 181 VLRIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNANDG--A 238
V R ++ + +SF + T FG L E+ D A
Sbjct: 181 VGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLA 240
Query: 239 LEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 298
+++GYIS+ S+ K ++IN R V + K + + A++ ++
Sbjct: 241 FKMNGYISNANYSVK-KCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTH--------- 290
Query: 299 KRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352
P L+L D+ P K V F E +L +++ I S +
Sbjct: 291 --------PFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLL 336
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 155/383 (40%), Gaps = 53/383 (13%)
Query: 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKV-FVYVGVCNCYVKVVDD 59
M I+++ + + + SG V+ DLT V+ELV NS+DA A ++ ++ ++ D+
Sbjct: 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 62
Query: 60 GSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAH 119
G GI L +H TSK +A D + T GFRGEAL+S+ ++ L +IT
Sbjct: 63 GDGIDPSNYEFLALKH-YTSK---IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTS 118
Query: 120 GRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKK 179
P K+ ++ GTTV+ LF+N PVR+K + K+
Sbjct: 119 --PPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLT 176
Query: 180 CVLRIALVHPKVSFKFIDME---SEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNAN- 235
+ A+++ + F ++ ++ +L T FG L+EV+
Sbjct: 177 VIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVL 236
Query: 236 ----------------------DGALEISGYISSPYDSI--SVKAFQYVYINSRYVCKGP 271
D + + GYIS + K Q++Y+N R V
Sbjct: 237 DLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYST 296
Query: 272 IHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHV 331
+ K N + +F+ N F PA LNL P SL D+ P K +
Sbjct: 297 LLKCCNEVYKTFN-------NVQF-----------PAVFLNLELPMSLIDVNVTPDKRVI 338
Query: 332 VFKDWEPVLAFIERAIRSAWMKK 354
+ + V+ + + + ++
Sbjct: 339 LLHNERAVIDIFKTTLSDYYNRQ 361
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGV--DLIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSK 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T H ++M
Sbjct: 86 KH-HTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTIST-CHASAKVGTRLMFDHN 140
Query: 134 CLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 172
+ + GTTV + LF PVR K Q + KK
Sbjct: 141 GKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGV--DLIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSK 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T H ++M
Sbjct: 86 KH-HTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTIST-CHASAKVGTRLMFDHN 140
Query: 134 CLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 172
+ + GTTV + LF PVR K Q + KK
Sbjct: 141 GKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGV--DLIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSK 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T G R +
Sbjct: 86 KH-HTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLXFDHNG 141
Query: 134 CLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 172
+ R GTTV + LF PVR K Q + KK
Sbjct: 142 KIIQKTPYPRPR-GTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|3NCV|A Chain A, Ngol
pdb|3NCV|B Chain B, Ngol
Length = 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 1177 FIPVVAGGTLAVIDQHAADERIRLEEL-RHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQ 1235
+I A +L +ID HAA ER+ E++ R + +G +S Q L++P
Sbjct: 40 YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQS-------QHLLIP-------V 85
Query: 1236 NFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLL--EF 1293
FA ++ + + H + F L L + + A P + G SDV L +
Sbjct: 86 TFAASHEECAALAD-HAETLAGFG--LELSDMGGNTLAVRAAPVMLGK--SDVVSLARDV 140
Query: 1294 LQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHG 1353
L +LA S T R+L + +C G+I G L E ++ +++ T QC HG
Sbjct: 141 LGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHG 200
Query: 1354 RPTTVPL 1360
RPT V L
Sbjct: 201 RPTWVKL 207
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 1133 IHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGT----LAV 1188
I N+D + D G +LT +++K+ + +V+ Q + FI V L +
Sbjct: 13 IKNKDELEDFEQGEKYLTL------TVSKNDFKKMEVVGQFNLGFIIVTRKVDNKYDLFI 66
Query: 1189 IDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWIC 1248
+DQHA+DE+ E L ++V + Q+L++P+ +L I + +
Sbjct: 67 VDQHASDEKYNFETL---------QAVTVFKS-QKLIIPQ-PVEL-----SVIDELVVLD 110
Query: 1249 NIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDG---SST 1305
N+ F ++ + + + LL++P D E + + + G +
Sbjct: 111 NLPVFEKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNI 170
Query: 1306 TPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNL 1363
+ + +ACR +IM G L +V L + + C HGRPT L+ L
Sbjct: 171 RCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMEL 228
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 1133 IHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGT----LAV 1188
I N+D + D G +LT +++K+ + +V+ Q + FI V L +
Sbjct: 12 IKNKDELEDFEQGEKYLTL------TVSKNDFKKMEVVGQFNLGFIIVTRKVDNKYDLFI 65
Query: 1189 IDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWIC 1248
+DQHA+DE+ E L ++V + Q+L++P+ +L I + +
Sbjct: 66 VDQHASDEKYNFETL---------QAVTVFKS-QKLIIPQ-PVEL-----SVIDELVVLD 109
Query: 1249 NIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDG---SST 1305
N+ F ++ + + + LL++P D E + + + G +
Sbjct: 110 NLPVFEKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNI 169
Query: 1306 TPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNL 1363
+ + +ACR +IM G L +V L + + C HGRPT L+ L
Sbjct: 170 RCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMEL 227
>pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form Ii
pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form Ii
pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis Mutl
Bound To Zn2+
pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis Mutl
Bound To Zn2+
Length = 197
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 28/194 (14%)
Query: 1170 LQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEI 1229
+ Q+ +I L +IDQHAA ERI+ E R KV E + QE+++P +
Sbjct: 12 IGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEV-------QEMIVP-L 63
Query: 1230 GYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVD 1289
+ N A I H Q S L ++ P F
Sbjct: 64 TFHYSTNEA-------LIIEQHKQELESVGVFLESFGSNSYIVR--CHPAWFPKGEEAEL 114
Query: 1290 LLEFLQQLADTDGSSTTPPSVLRVLNSKA-----CRGAIMFGDSLLPSECALIVEELKQT 1344
+ E +QQ+ D+ ++ L +A C+G+I L E ++++L+ T
Sbjct: 115 IEEIIQQVLDSKNID------IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRST 168
Query: 1345 SLCFQCAHGRPTTV 1358
S F C HGRP +
Sbjct: 169 SDPFTCPHGRPIII 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,007,341
Number of Sequences: 62578
Number of extensions: 1787233
Number of successful extensions: 4050
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4002
Number of HSP's gapped (non-prelim): 17
length of query: 1403
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1292
effective length of database: 8,027,179
effective search space: 10371115268
effective search space used: 10371115268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)