Query 000586
Match_columns 1403
No_of_seqs 428 out of 2694
Neff 4.4
Searched_HMMs 46136
Date Mon Apr 1 20:09:23 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1977 DNA mismatch repair pr 100.0 3E-128 6E-133 1119.8 37.6 1117 3-1400 1-1140(1142)
2 COG0323 MutL DNA mismatch repa 100.0 1.4E-95 3E-100 886.5 58.4 332 1-355 1-334 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 3.4E-89 7.4E-94 831.0 60.6 326 3-354 2-328 (617)
4 KOG1978 DNA mismatch repair pr 100.0 2.4E-77 5.2E-82 707.0 39.7 311 4-352 1-318 (672)
5 KOG1979 DNA mismatch repair pr 100.0 5.7E-62 1.2E-66 563.9 23.6 339 1-363 5-348 (694)
6 TIGR00585 mutl DNA mismatch re 100.0 1.1E-56 2.3E-61 507.0 30.6 305 2-332 1-312 (312)
7 PF08676 MutL_C: MutL C termin 99.9 1.4E-27 3.1E-32 241.4 14.6 143 1166-1329 2-144 (144)
8 PRK14867 DNA topoisomerase VI 99.9 3.3E-24 7.1E-29 260.8 22.9 248 22-318 35-307 (659)
9 PF01119 DNA_mis_repair: DNA m 99.9 6.8E-23 1.5E-27 202.9 12.0 119 217-352 1-119 (119)
10 cd03485 MutL_Trans_hPMS_1_like 99.9 4.2E-22 9.1E-27 200.8 14.3 125 213-351 2-131 (132)
11 cd03482 MutL_Trans_MutL MutL_T 99.9 3.1E-22 6.6E-27 200.0 12.8 122 214-352 2-123 (123)
12 cd03486 MutL_Trans_MLH3 MutL_T 99.9 4.2E-22 9E-27 203.2 13.6 135 213-352 2-141 (141)
13 cd03483 MutL_Trans_MLH1 MutL_T 99.9 3.6E-22 7.8E-27 200.5 12.8 122 212-351 1-126 (127)
14 PRK14868 DNA topoisomerase VI 99.9 4.2E-22 9.1E-27 243.0 13.9 203 23-251 46-272 (795)
15 cd00782 MutL_Trans MutL_Trans: 99.9 1E-21 2.3E-26 193.9 12.4 121 214-351 2-122 (122)
16 smart00853 MutL_C MutL C termi 99.9 5.1E-21 1.1E-25 191.3 17.0 134 1167-1318 2-136 (136)
17 cd03484 MutL_Trans_hPMS_2_like 99.8 8.4E-21 1.8E-25 194.1 13.6 122 213-352 2-142 (142)
18 TIGR01055 parE_Gneg DNA topois 99.8 5.2E-20 1.1E-24 225.8 22.2 245 3-269 8-274 (625)
19 smart00433 TOP2c Topoisomerase 99.8 5.6E-20 1.2E-24 224.8 22.3 300 24-354 2-329 (594)
20 PRK05644 gyrB DNA gyrase subun 99.8 2.3E-18 5.1E-23 211.9 26.6 243 4-269 13-280 (638)
21 PRK05559 DNA topoisomerase IV 99.8 2.6E-18 5.5E-23 211.5 26.2 318 4-354 13-365 (631)
22 TIGR01059 gyrB DNA gyrase, B s 99.8 9.4E-19 2E-23 216.2 22.0 321 3-354 5-360 (654)
23 PRK14939 gyrB DNA gyrase subun 99.8 3.6E-18 7.7E-23 212.0 19.1 243 3-269 11-278 (756)
24 TIGR01052 top6b DNA topoisomer 99.8 2.3E-18 4.9E-23 205.2 15.4 160 21-199 26-205 (488)
25 PRK05218 heat shock protein 90 99.8 1.4E-17 3E-22 204.5 21.4 236 10-270 14-298 (613)
26 PRK04184 DNA topoisomerase VI 99.6 1.7E-15 3.6E-20 182.6 17.3 156 23-198 36-213 (535)
27 cd00329 TopoII_MutL_Trans MutL 99.5 1.3E-13 2.8E-18 130.8 9.8 105 214-332 2-107 (107)
28 COG1389 DNA topoisomerase VI, 99.5 2.8E-13 6.1E-18 157.5 12.9 165 20-198 33-213 (538)
29 PF13589 HATPase_c_3: Histidin 99.4 4E-13 8.6E-18 136.3 4.0 100 23-130 2-106 (137)
30 PRK14083 HSP90 family protein; 99.2 8.7E-11 1.9E-15 144.6 16.3 241 11-269 12-277 (601)
31 TIGR01058 parE_Gpos DNA topois 99.2 2.2E-10 4.8E-15 142.0 19.4 244 3-269 9-275 (637)
32 COG0187 GyrB Type IIA topoisom 99.0 4.2E-09 9.2E-14 127.9 16.0 318 4-354 11-365 (635)
33 COG0326 HtpG Molecular chapero 98.9 2.8E-08 6E-13 121.5 16.6 240 19-270 23-306 (623)
34 PTZ00109 DNA gyrase subunit b; 98.8 2.6E-08 5.6E-13 125.7 14.1 246 4-268 105-434 (903)
35 PTZ00272 heat shock protein 83 98.8 5E-09 1.1E-13 130.9 7.8 158 18-187 20-198 (701)
36 PTZ00130 heat shock protein 90 98.8 9.8E-09 2.1E-13 128.9 9.6 158 18-187 83-263 (814)
37 PHA02569 39 DNA topoisomerase 98.7 1.8E-08 4E-13 124.6 8.8 160 21-198 43-223 (602)
38 PLN03128 DNA topoisomerase 2; 98.7 3.4E-07 7.5E-12 119.5 17.5 167 19-197 48-233 (1135)
39 PTZ00108 DNA topoisomerase 2-l 98.7 7.8E-08 1.7E-12 126.5 11.7 167 19-197 53-240 (1388)
40 PLN03237 DNA topoisomerase 2; 98.5 4.9E-07 1.1E-11 118.9 12.7 167 20-198 74-259 (1465)
41 PF02518 HATPase_c: Histidine 98.3 1.5E-06 3.3E-11 83.7 7.9 78 22-110 4-85 (111)
42 TIGR02938 nifL_nitrog nitrogen 97.8 4.1E-05 8.8E-10 89.3 8.4 73 24-109 388-468 (494)
43 KOG0019 Molecular chaperone (H 97.7 8.2E-05 1.8E-09 90.8 9.2 166 3-186 42-226 (656)
44 PRK11006 phoR phosphate regulo 97.7 0.00016 3.4E-09 85.5 9.8 57 23-80 317-377 (430)
45 PRK10604 sensor protein RstB; 97.6 0.00019 4.1E-09 85.4 9.7 55 24-79 320-376 (433)
46 PRK15053 dpiB sensor histidine 97.6 0.00015 3.2E-09 87.8 9.0 74 23-109 432-513 (545)
47 PRK10364 sensor protein ZraS; 97.5 0.00023 5E-09 84.6 9.3 57 23-80 348-408 (457)
48 PRK09303 adaptive-response sen 97.5 0.0002 4.3E-09 84.1 8.5 56 24-80 273-333 (380)
49 PRK10549 signal transduction h 97.5 0.00024 5.2E-09 83.8 8.8 76 24-109 353-432 (466)
50 COG3290 CitA Signal transducti 97.5 0.00018 3.9E-09 87.6 7.4 81 14-109 418-505 (537)
51 COG4191 Signal transduction hi 97.4 0.00016 3.4E-09 88.6 5.6 59 22-81 496-560 (603)
52 PRK09470 cpxA two-component se 97.3 0.00077 1.7E-08 79.2 9.8 55 24-79 354-410 (461)
53 cd00075 HATPase_c Histidine ki 97.3 0.0011 2.4E-08 59.8 8.7 52 24-75 1-57 (103)
54 TIGR01386 cztS_silS_copS heavy 97.3 0.00099 2.1E-08 77.9 10.6 76 24-109 354-433 (457)
55 PRK11100 sensory histidine kin 97.3 0.00078 1.7E-08 79.0 8.9 76 23-109 368-447 (475)
56 PRK09467 envZ osmolarity senso 97.2 0.00093 2E-08 78.3 9.3 52 24-75 332-385 (435)
57 PRK10815 sensor protein PhoQ; 97.1 0.0012 2.6E-08 80.5 9.1 54 24-78 379-434 (485)
58 KOG0020 Endoplasmic reticulum 97.1 0.0014 3.1E-08 78.3 9.2 146 25-186 97-272 (785)
59 PRK15347 two component system 97.1 0.0014 3E-08 84.4 9.5 56 24-80 514-572 (921)
60 PRK10755 sensor protein BasS/P 97.1 0.0024 5.2E-08 73.3 10.0 52 24-75 248-303 (356)
61 TIGR02916 PEP_his_kin putative 97.0 0.0015 3.3E-08 82.4 8.9 56 24-80 580-640 (679)
62 COG0642 BaeS Signal transducti 97.0 0.0011 2.4E-08 71.8 6.7 59 23-82 228-289 (336)
63 smart00387 HATPase_c Histidine 97.0 0.0062 1.4E-07 55.9 10.7 77 23-110 5-85 (111)
64 TIGR02966 phoR_proteo phosphat 97.0 0.0025 5.3E-08 70.6 9.6 55 24-79 230-288 (333)
65 PRK10337 sensor protein QseC; 97.0 0.002 4.3E-08 76.1 8.6 53 24-79 353-407 (449)
66 PRK11086 sensory histidine kin 97.0 0.0025 5.4E-08 76.6 9.4 57 23-80 433-495 (542)
67 PRK11091 aerobic respiration c 96.9 0.0029 6.4E-08 80.6 9.8 87 23-118 398-493 (779)
68 TIGR01925 spIIAB anti-sigma F 96.8 0.0061 1.3E-07 61.4 9.3 56 21-79 37-99 (137)
69 PRK11360 sensory histidine kin 96.7 0.0035 7.6E-08 75.1 8.3 57 23-80 500-561 (607)
70 PRK13557 histidine kinase; Pro 96.6 0.006 1.3E-07 72.9 9.1 56 24-80 278-352 (540)
71 PRK10490 sensor protein KdpD; 96.6 0.0056 1.2E-07 80.1 9.2 56 24-80 779-838 (895)
72 PRK11466 hybrid sensory histid 96.6 0.0051 1.1E-07 79.5 8.7 54 24-78 562-618 (914)
73 PRK10618 phosphotransfer inter 96.6 0.0064 1.4E-07 79.6 9.6 58 23-81 565-628 (894)
74 TIGR02956 TMAO_torS TMAO reduc 96.6 0.0058 1.2E-07 79.4 9.0 57 23-80 579-639 (968)
75 PRK13837 two-component VirA-li 96.5 0.0099 2.1E-07 77.0 10.5 56 24-80 561-635 (828)
76 TIGR03785 marine_sort_HK prote 96.4 0.013 2.8E-07 74.9 10.3 57 23-80 597-657 (703)
77 PRK11107 hybrid sensory histid 96.4 0.0099 2.1E-07 76.6 9.3 85 24-118 409-506 (919)
78 PRK11073 glnL nitrogen regulat 96.3 0.016 3.5E-07 66.0 9.8 56 24-80 238-308 (348)
79 PRK09835 sensor kinase CusS; P 96.3 0.024 5.2E-07 67.3 11.2 57 23-80 375-435 (482)
80 PRK09959 hybrid sensory histid 96.2 0.013 2.8E-07 78.4 9.1 57 23-80 828-892 (1197)
81 PRK10841 hybrid sensory kinase 96.0 0.044 9.5E-07 72.3 12.6 55 24-79 563-620 (924)
82 PRK04069 serine-protein kinase 95.7 0.028 6E-07 59.2 7.4 56 20-75 39-101 (161)
83 PRK10547 chemotaxis protein Ch 95.4 0.058 1.3E-06 68.9 9.9 44 26-69 388-447 (670)
84 COG0643 CheA Chemotaxis protei 95.2 0.029 6.2E-07 72.0 6.7 49 22-70 431-495 (716)
85 COG5002 VicK Signal transducti 95.1 0.032 6.8E-07 65.7 5.7 72 23-104 342-417 (459)
86 TIGR01924 rsbW_low_gc serine-p 95.0 0.08 1.7E-06 55.9 8.3 85 19-115 38-130 (159)
87 PRK03660 anti-sigma F factor; 95.0 0.15 3.4E-06 51.8 9.9 53 21-75 37-96 (146)
88 COG2205 KdpD Osmosensitive K+ 94.8 0.12 2.7E-06 66.2 10.2 54 24-78 776-833 (890)
89 COG3851 UhpB Signal transducti 94.3 0.16 3.5E-06 60.1 8.9 43 22-64 409-454 (497)
90 PRK11644 sensory histidine kin 93.8 0.066 1.4E-06 65.9 5.0 43 24-66 411-456 (495)
91 PRK10600 nitrate/nitrite senso 93.1 0.1 2.3E-06 64.6 5.2 43 24-66 470-515 (569)
92 PF13581 HATPase_c_2: Histidin 93.1 0.23 4.9E-06 49.3 6.5 78 20-114 28-113 (125)
93 COG3850 NarQ Signal transducti 93.1 0.098 2.1E-06 64.5 4.7 43 24-66 482-527 (574)
94 COG2972 Predicted signal trans 93.1 0.2 4.4E-06 61.0 7.5 52 21-72 348-407 (456)
95 COG5000 NtrY Signal transducti 93.0 0.12 2.6E-06 64.5 5.3 57 24-81 601-668 (712)
96 COG4585 Signal transduction hi 92.4 0.16 3.4E-06 59.7 5.1 45 22-66 278-325 (365)
97 COG4192 Signal transduction hi 92.3 0.19 4E-06 61.0 5.5 60 22-82 563-628 (673)
98 COG3852 NtrB Signal transducti 91.8 0.24 5.3E-06 57.9 5.5 57 24-81 242-316 (363)
99 PRK13560 hypothetical protein; 91.2 0.22 4.7E-06 63.0 4.7 43 24-66 712-762 (807)
100 KOG0355 DNA topoisomerase type 88.7 0.85 1.8E-05 58.9 7.0 50 19-68 49-102 (842)
101 PRK10935 nitrate/nitrite senso 87.7 0.62 1.3E-05 57.0 4.9 42 24-65 472-517 (565)
102 PRK13559 hypothetical protein; 86.1 0.82 1.8E-05 52.8 4.5 43 23-65 267-318 (361)
103 COG4251 Bacteriophytochrome (l 84.7 3.4 7.3E-05 52.5 8.9 51 24-74 637-692 (750)
104 COG3920 Signal transduction hi 83.3 1.4 3E-05 49.4 4.6 45 22-66 121-174 (221)
105 COG3275 LytS Putative regulato 83.1 1.2 2.5E-05 54.9 4.1 43 24-66 457-507 (557)
106 KOG0787 Dehydrogenase kinase [ 78.0 4.6 0.0001 48.7 6.6 54 22-75 259-324 (414)
107 COG2172 RsbW Anti-sigma regula 75.8 9.7 0.00021 40.4 7.7 54 20-75 37-98 (146)
108 COG4564 Signal transduction hi 73.6 3.7 8E-05 48.8 4.2 45 22-66 358-405 (459)
109 KOG1979 DNA mismatch repair pr 61.7 41 0.00088 43.0 9.9 49 1160-1208 466-514 (694)
110 PF02742 Fe_dep_repr_C: Iron d 48.9 11 0.00024 35.1 1.8 38 1317-1357 32-69 (71)
111 COG1321 TroR Mn-dependent tran 33.5 34 0.00074 36.8 2.9 38 1316-1356 95-132 (154)
112 COG1929 Glycerate kinase [Carb 33.1 27 0.00058 42.3 2.2 63 27-110 113-175 (378)
113 PF14501 HATPase_c_5: GHKL dom 23.1 91 0.002 30.3 3.6 38 22-59 4-48 (100)
No 1
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-128 Score=1119.76 Aligned_cols=1117 Identities=22% Similarity=0.214 Sum_probs=910.2
Q ss_pred CcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCC
Q 000586 3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLG 82 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~ 82 (1403)
+|++||.+|..+++||..|.+++++|+|||.|||||+||+|.|.|+...+.++|.|||.||.++||..+|.|| +|||++
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry-~TSK~h 79 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRY-FTSKCH 79 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhh-hhhhce
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEE--EEEeCceeeeeccccccCCCCeEEEEcccccCch
Q 000586 83 HLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYR--KVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 160 (1403)
Q Consensus 83 s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~--i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNlP 160 (1403)
...|+.+. .||||||||||||+.+|.+.|+|+.++.+.+|. +...|.++...+++..+...||||+|+||||++|
T Consensus 80 ~~ndl~~~---~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lP 156 (1142)
T KOG1977|consen 80 SVNDLENP---RTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLP 156 (1142)
T ss_pred eccccccc---cccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcch
Confidence 99999874 699999999999999999999999999988887 5666777777788888889999999999999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecCCCeE
Q 000586 161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALE 240 (1403)
Q Consensus 161 VRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~~~~k 240 (1403)
|||++....++++++.|++.|.++||+||.|+|+|.++.++.+++++.++....+.+..--|- .
T Consensus 157 VRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr~k~~----------------e 220 (1142)
T KOG1977|consen 157 VRRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFRYKEF----------------E 220 (1142)
T ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhhhccc----------------c
Confidence 999988888999999999999999999999999999998888999998776554444332222 2
Q ss_pred EEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcCCCcc
Q 000586 241 ISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLY 320 (1403)
Q Consensus 241 IsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~V 320 (1403)
+. +..+ .-++..+|+|||||.|.....++.+..+.+. ....-.|-|||+|.||..+|
T Consensus 221 ~~---~s~~--~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~------------------~~~~~~P~yvi~v~cp~~ly 277 (1142)
T KOG1977|consen 221 LS---SSEA--HYNKTMGFLFVNKRLVLRTKKHKLIDQLLRK------------------ESIICKPKYVINVQCPFCLY 277 (1142)
T ss_pred cc---cchh--ccccccceeeecchhhhccchhhHHHHHHHh------------------hheeccCcceeecccchhhh
Confidence 21 1111 1246689999999999988888888765321 11235688999999999999
Q ss_pred cccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchhhhccccCCCccccccccCCCccccccccchhhhhccc
Q 000586 321 DLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDH 400 (1403)
Q Consensus 321 DVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 400 (1403)
||..+|+|+.|.|++|+.|+.+|++.+..||++......++++ .+.+..+.+|. .++|.+.
T Consensus 278 ~vs~epakt~ieF~~w~~~l~~I~~~~~~~~kkd~~f~~~~G~-----~~~lad~~~Q~-----~vds~~r--------- 338 (1142)
T KOG1977|consen 278 DVSMEPAKTLIEFQNWDTLLFCIQEGVKMFLKKDKLFVELSGE-----GFSLADATLQK-----RVDSDER--------- 338 (1142)
T ss_pred hhhcCcccchhhhhcchhhHhHHHHhhhhhhhcceeEEEecCc-----ccccchhhhhh-----hcchhhh---------
Confidence 9999999999999999999999999999999999888888865 12222233333 1222211
Q ss_pred cccccccccccccccCCchhhhhhccccccccCCCCCCccccCcccccCCCCCCCcccceeeccccccccCCCCccccCc
Q 000586 401 MFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSP 480 (1403)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1403)
..|||.-..-+.+ -+| |. ..+.+
T Consensus 339 --------~~~~~~~~~i~~~----~~~---------------------------------------~~------~~~~~ 361 (1142)
T KOG1977|consen 339 --------SNFQEACNNILDS----YEM---------------------------------------FN------LQSKA 361 (1142)
T ss_pred --------hhhhhhhhhhhhh----hhh---------------------------------------hh------hhhhh
Confidence 1122221111111 000 00 33456
Q ss_pred hhhcccccCCccccccccccccccccCCchhhhhccccccccCCCCCccCcCCCCccccccCCccccccccccccccccc
Q 000586 481 PLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQ 560 (1403)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1403)
...+++++++|.. .-..++..||..|+++|...+..| -|.-+.....++.+.+.|.-. |-
T Consensus 362 ~krk~~~~n~~~~--ss~lf~a~df~~~g~~l~~~ksvg--~p~~~~~~~~~~~kd~~~~~~----------------~~ 421 (1142)
T KOG1977|consen 362 VKRKTTAENVNTQ--SSRLFEATDFNTNGAFLYIYKSVG--PPHSKMTEPSLQNKDSSCSES----------------KM 421 (1142)
T ss_pred hhhhhcccccCCc--hhccchhhccCCCCceEEeecccC--CCcccccccccCcccccccch----------------hh
Confidence 7789999999988 557888999999999999888777 111111111123333333211 11
Q ss_pred cccCCCCccCCccccccccCCcccchhhhhhcccccccCCchhhcccchh-hhccccccCCCcCCCCccccccccccccc
Q 000586 561 YHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKR-ELVSQPKYSSKLLDCPFAECLSPVLRKID 639 (1403)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1403)
-. .+.+ ....+.++.+..+||+ ++++.. ..++
T Consensus 422 ~~--~eti-~~S~~~e~e~~~~~~~-------------------~~~~le~~~~~------------------------- 454 (1142)
T KOG1977|consen 422 LE--QETI-VASEAGENEKHKKSFL-------------------EHSSLENLSPF------------------------- 454 (1142)
T ss_pred hc--hhhh-hhcccccccccccccc-------------------ccccccccccc-------------------------
Confidence 11 1222 3444555566666654 233332 1222
Q ss_pred ccCCccCCccccccccccchhhccCCCCCCcccccccccccCC-ccccccCCccCCCCCCCCCCCccccCcccccccccC
Q 000586 640 LHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGY-EYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIK 718 (1403)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1403)
...+..+++..|. ....+++.+|+++..+=. ++ .+|+++.||++.++
T Consensus 455 ---------dt~C~~e~~~~~q---~tt~~~~~~d~lkd~~i~nq~--------------------k~~kd~~evt~~~g 502 (1142)
T KOG1977|consen 455 ---------DTPCHFELEIWKQ---STTVNGMAADILKDNRIQNQP--------------------KRFKDATEVTTLWG 502 (1142)
T ss_pred ---------cCchhhhhhcccc---ccccccchhhhhcChhhhccc--------------------ccccchhhhhhhHH
Confidence 2344556788888 889999999999987722 44 89999999999999
Q ss_pred cccccccccCCCCCCCCCCccCCcccccccccccccccccccccccccchhhhhcccCCccCCCCCCCCCcc----cccc
Q 000586 719 KPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDE----ASCS 794 (1403)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 794 (1403)
|++++.|+++.+..+++|.+++ ..++|...++|++.++...+..+-+-- .--.+..--|--++.+|||+ +.|+
T Consensus 503 kh~~~~c~~r~~~s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~g--~t~~s~~TPD~s~~as~~d~~~~~~nCs 579 (1142)
T KOG1977|consen 503 KHSAQTCGRRNVFSYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFGG--RTRHSVETPDISDLASTLDQLPNKKNCS 579 (1142)
T ss_pred HHHhhhccccceeeccCCccee-eeccccccccccccccCCchhhhhccC--cccccccCCCccccccccccCccccccc
Confidence 9999999999999999999999 999999999999877765544331100 00011233344558999998 7898
Q ss_pred ccCcccccccccccccccccccccccCCCCCCCccccccCCCCCcccccCccccccccccccccccCCCCCCCCCcCCCc
Q 000586 795 QHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGH 874 (1403)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1403)
+.. --+.+.+++...+...+. +.+|++..+..+++ +..++|+|..+..+|.++|.|+|+.| .+|.|.+++
T Consensus 580 t~~----~~~~~~e~tat~p~~~v~-~dsrd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~ 649 (1142)
T KOG1977|consen 580 TNI----SYGLENEPTATYPMFHVS-NDSRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDS 649 (1142)
T ss_pred ccc----cccccCCccccccchhcc-ccchhhhhccccce---eeeecchhhhcceeecccccccccCc--ccccccccc
Confidence 443 234677888887766554 45889999999996 67778999999999999999999998 799999999
Q ss_pred cccccccccccccCCCCccCccccccc-ccccccccccccCccccccccccCCccccccCchhhhhhhcccCCCCCccCc
Q 000586 875 FIYNNALEGHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSR 953 (1403)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1403)
..+|..++.++.+|+ +|...++.+.. |++|||+. .|.+.+|.| +..+|++..+|+..
T Consensus 650 ~~gCri~~~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~---------------- 707 (1142)
T KOG1977|consen 650 DSGCRIASHILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT---------------- 707 (1142)
T ss_pred ccccchhhhhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc----------------
Confidence 999999999999999 99999999998 89999999 788999999 99999999999887
Q ss_pred CCCCCCCCCccccccccc----ccccCCchhhhcccccCCCCCCCcccccccccCCCCCccccccccccccccccccCCC
Q 000586 954 EHSDVPFDKTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS 1029 (1403)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1403)
.|-.|.+++ ++..|+..|++.+|.|+...|++++|+|+.|+++||||||+++|||++.|.+..+.+.
T Consensus 708 ---------~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN 778 (1142)
T KOG1977|consen 708 ---------QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQN 778 (1142)
T ss_pred ---------ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcC
Confidence 455565555 6678899999999999999999999999999999999999999999999999999883
Q ss_pred --CCccccccCCCCcccccccccccccccccccCCC-CccCCCCchhhhhhccch------hhHhhhhhcccccccCccc
Q 000586 1030 --NAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL------DLEETHKAENFKLSLCPHA 1100 (1403)
Q Consensus 1030 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 1100 (1403)
.+.+..| ...++.... |+.++. .+|+.| +.|........ ..|.|..++.-.+..+.|.
T Consensus 779 ~~cp~~~e~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k~tf~A~dlk~~a~C~tV~vd~~~ed~~q 845 (1142)
T KOG1977|consen 779 GICPQSEES---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNKMTFIAPDLKIQAACTTVAVDVVLEDRCQ 845 (1142)
T ss_pred CCCcchhHh---hcccchhhh---------hhccchhHHHHHH-HHHHHhhhcceecccchhhccceEEEeeeehhhhhc
Confidence 5566666 555555555 677777 555544 66665544221 5567999999888889999
Q ss_pred ccccccccccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccccCcccccCceEeeeecCEEEE
Q 000586 1101 HLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIP 1179 (1403)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~i~dis~g~~~l~~~-~~i~~~IsK~~f~~~rVIGQvdkkFIL 1179 (1403)
++.|+..-.-|...++||..+.+-+++..+++.+.++-..+++.+..+++-+ +++|++|+|.++.+|+|+.|++++||.
T Consensus 846 ~f~Se~~l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~ 925 (1142)
T KOG1977|consen 846 PFRSELVLPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIA 925 (1142)
T ss_pred ccchhhccccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhhee
Confidence 9999977667788999999999999999999999999999999999998655 899999999999999999999999999
Q ss_pred EEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcCcEEEEeccCccccc
Q 000586 1180 VVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFN 1259 (1403)
Q Consensus 1180 ~E~~dgLyIIDQHAAHERI~yErL~k~l~s~~~~sq~lL~p~Q~LllP~~e~~lLee~le~LeklGFeiei~~~G~~sFG 1259 (1403)
|..-+..-++|||||+||++.|.+..++... .+|+++.++.+-+.++++|+.|.++++.|||++.+...+...|.
T Consensus 926 ~v~~~~~~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~ 1000 (1142)
T KOG1977|consen 926 CVMSTKTEENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVL 1000 (1142)
T ss_pred eeeeccccccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEeccccccccee
Confidence 9999999999999999999999998776532 35777788877778999999999999999999998878877888
Q ss_pred cccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q 000586 1260 KNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVE 1339 (1403)
Q Consensus 1260 ~n~~~~~~~~~tI~LrsVP~iL~~~l~~~DL~ElL~eL~et~gs~~ip~~i~elLAS~ACRsAIK~GD~LS~eEM~~LI~ 1339 (1403)
.++.++.+.+..+...++|+++......+++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||..||+
T Consensus 1001 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~ 1080 (1142)
T KOG1977|consen 1001 VGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIE 1080 (1142)
T ss_pred ccccceecccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHH
Confidence 88888888888888999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCcEEEEcCChHHHHHHHHHhhhchHhhhccccccchHHHHHHHhhhc
Q 000586 1340 ELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1400 (1403)
Q Consensus 1340 eL~~c~~Pf~CPHGRPT~v~L~sl~eL~k~F~rl~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1400 (1403)
.|.+|.+||+|+||||+|+||+++..|+||++.+ -.+..||++++.+..++||..|++.+
T Consensus 1081 ~Ls~c~lpFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1081 ALSSCQLPFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred HHHhcCCchhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence 9999999999999999999999999999999998 56667999999999999999998754
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-95 Score=886.53 Aligned_cols=332 Identities=33% Similarity=0.455 Sum_probs=302.0
Q ss_pred CCCcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEecCee-EEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 1 M~~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~g~~-~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
|..|+.||+++++||+|||||++|++|||||||||||||||+|+|.++.|+. .|+|.|||+||+++||+.++.|| +||
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rH-aTS 79 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRH-ATS 79 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhh-ccc
Confidence 7779999999999999999999999999999999999999999999987765 69999999999999999999999 999
Q ss_pred cCCCccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEEEEEeCceeeeeccccccCCCCeEEEEcccccCc
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQ 159 (1403)
Q Consensus 80 Ki~s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNl 159 (1403)
||.+++||.+ |.|||||||||+||++||+|+|+||+.+...||++.+.||.... .+.+...+.||||+|+|||||+
T Consensus 80 KI~~~~DL~~---I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~-~~~p~a~~~GTtVeV~dLF~Nt 155 (638)
T COG0323 80 KIASLEDLFR---IRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEV-TVKPAAHPVGTTVEVRDLFYNT 155 (638)
T ss_pred cCCchhHHHH---hhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccc-cccCCCCCCCCEEEehHhhccC
Confidence 9999999987 57999999999999999999999999888999999999987531 4556677889999999999999
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC-ceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecCCC
Q 000586 160 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGA 238 (1403)
Q Consensus 160 PVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~-k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~~~ 238 (1403)
|+||||++ +.+.++.+|.++|++|||+||+|+|+|.++++. ..+..+...+....++..+||..+.+++.+++....+
T Consensus 156 PaRrKflk-s~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~~ 234 (638)
T COG0323 156 PARRKFLK-SEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHED 234 (638)
T ss_pred hHHHHhhc-ccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCCc
Confidence 99999987 478999999999999999999999999986432 1456666666666789999999999999999999999
Q ss_pred eEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcCCC
Q 000586 239 LEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHS 318 (1403)
Q Consensus 239 ~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps 318 (1403)
++|.||++.|...+.++++||+|||||+|.+..|.++|.+. |..+++ .++||+|||+|+|+|.
T Consensus 235 ~~l~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~a---Y~~~L~--------------~~r~P~~vL~l~l~p~ 297 (638)
T COG0323 235 LRLSGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREA---YADYLP--------------RGRYPVFVLFLELDPE 297 (638)
T ss_pred eEEEEEecccccccCCccceEEEECCCEeccHHHHHHHHHH---HHhhcc--------------CCCCcEEEEEEeeChh
Confidence 99999999998889999999999999999999888888765 444332 4689999999999999
Q ss_pred cccccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhc
Q 000586 319 LYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 355 (1403)
Q Consensus 319 ~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~~~~ 355 (1403)
.|||||||+|.||+|+++..|.++|+++|..+|....
T Consensus 298 ~vDVNVHP~K~EVrf~~~~~i~~~I~~~I~~~L~~~~ 334 (638)
T COG0323 298 LVDVNVHPAKKEVRFSDERLVHDLIYEAIKEALAQQG 334 (638)
T ss_pred hcccccCCCcceEEecCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998764
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=3.4e-89 Score=831.00 Aligned_cols=326 Identities=33% Similarity=0.510 Sum_probs=296.2
Q ss_pred CcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEec-CeeEEEEEeCCCCCCHHHHHHhhcccccCCcC
Q 000586 3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGV-CNCYVKVVDDGSGISRDGLVLLGERHAATSKL 81 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~-g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi 81 (1403)
+|++||++|+++|+||+||++|++||+|||+||||||||.|.|.|.. |...|+|.|||+||+++|+..++.+| +|||+
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~-~tsKi 80 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARH-ATSKI 80 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhcc-CCCCC
Confidence 59999999999999999999999999999999999999999999964 44689999999999999999999999 99999
Q ss_pred CCccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEEEEEeCceeeeeccccccCCCCeEEEEcccccCchh
Q 000586 82 GHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPV 161 (1403)
Q Consensus 82 ~s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNlPV 161 (1403)
.+++|+.. +.|+|||||||+||++||+|+|+||+.++..+|++.+.+|+.. ...+....+||||+|+|||||+||
T Consensus 81 ~~~~dl~~---~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~--~~~~~~~~~GT~V~v~~LF~n~P~ 155 (617)
T PRK00095 81 ASLDDLEA---IRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV--EVKPAAHPVGTTIEVRDLFFNTPA 155 (617)
T ss_pred CChhHhhc---cccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc--ceecccCCCCCEEEechhhccCcH
Confidence 99999986 4799999999999999999999999988888999999988754 233444679999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecCCCeEE
Q 000586 162 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEI 241 (1403)
Q Consensus 162 RRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~~~~kI 241 (1403)
|||++++ .+.++..|+++|++||++||+|+|+|.+. ++.++.+.+..++.+++..+||......+..++.+.+.++|
T Consensus 156 Rrkflk~-~~~e~~~i~~~v~~~Al~~p~i~f~l~~~--~~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~~~~~i 232 (617)
T PRK00095 156 RRKFLKS-EKTELGHIDDVVNRLALAHPDVAFTLTHN--GKLVLQTRGAGQLLQRLAAILGREFAENALPIDAEHGDLRL 232 (617)
T ss_pred HHHhccC-cHHHHHHHHHHHHHHhhcCCCcEEEEEEC--CEEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccCCCEEE
Confidence 9999864 67889999999999999999999999985 34567777778899999999999988889999988889999
Q ss_pred EEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcCCCccc
Q 000586 242 SGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYD 321 (1403)
Q Consensus 242 sGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VD 321 (1403)
+|||+.|...+.++..||+|||||+|..+.+.++|+++|..+ .+ ..+||+|+|+|+|||..||
T Consensus 233 ~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~---~~--------------~~~~P~~~l~i~~~~~~~D 295 (617)
T PRK00095 233 SGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDL---LP--------------RGRYPAFVLFLELDPHQVD 295 (617)
T ss_pred EEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHh---cc--------------CCCCcEEEEEEEeChHhcc
Confidence 999999977788899999999999999999999998765533 21 3589999999999999999
Q ss_pred ccccCCCCeEEeCCchHHHHHHHHHHHHHHhhh
Q 000586 322 LTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 322 VNVhPsKtEV~F~de~~Il~lI~kaI~~fL~~~ 354 (1403)
|||||+|++|+|.+|+.|+++|+++|+++|...
T Consensus 296 vNvhP~K~ev~f~~e~~i~~~i~~~i~~~l~~~ 328 (617)
T PRK00095 296 VNVHPAKHEVRFRDERLVHDLIVQAIQEALAQS 328 (617)
T ss_pred cccCCCcCEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999653
No 4
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-77 Score=707.05 Aligned_cols=311 Identities=29% Similarity=0.368 Sum_probs=278.9
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEE-ecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCC
Q 000586 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYV-GVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLG 82 (1403)
Q Consensus 4 Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~I-d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~ 82 (1403)
|++||++++.+|+||+||.++++|||||||||||||||.|+|.+ ++|-.+|+|.|||+||++.|++.++..| +|||+.
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh-~TSKi~ 79 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH-TTSKIV 79 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhh-hhhccc
Confidence 78999999999999999999999999999999999999999999 5677899999999999999999999999 999999
Q ss_pred CccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEEEEEeC-ceeeeeccccccCCCCeEEEEcccccCchh
Q 000586 83 HLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKG-SKCLYLGIDDERKDVGTTVVSRDLFYNQPV 161 (1403)
Q Consensus 83 s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~i~i~~-gk~~~~~~~~~~~~~GTTV~V~dLFyNlPV 161 (1403)
+|.|+.. +.|||||||||.|||+++.|+|+|++.+.+.|.++.++. |... ...+.+.++||||.|++||.|+||
T Consensus 80 ~f~Dl~~---l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~--~k~~~ar~~GTTV~v~~LF~tLPV 154 (672)
T KOG1978|consen 80 SFADLAV---LFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII--QKKPVARGRGTTVMVRQLFSTLPV 154 (672)
T ss_pred chhhhhh---hhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee--eeccccCCCCCEEEHhhhcccCCC
Confidence 9999987 479999999999999999999999999889999999874 3332 445667899999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCC---CCceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecCCC
Q 000586 162 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME---SEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGA 238 (1403)
Q Consensus 162 RRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~---~~k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~~~ 238 (1403)
|||.+.++.++++.++..+++.||+++++|+|.+.+.. +...++++.+..+....+.++||...+..+.++..
T Consensus 155 R~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~---- 230 (672)
T KOG1978|consen 155 RRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIF---- 230 (672)
T ss_pred chHHhhcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccc----
Confidence 99999999999999999999999999999999998753 22346677777888999999999998888887662
Q ss_pred eEEEEEEeCC--CcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcC
Q 000586 239 LEISGYISSP--YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCP 316 (1403)
Q Consensus 239 ~kIsGfIS~P--~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cP 316 (1403)
|+.. ...+.+.++||+|||+|||....+-+++|++|..|.. .+| |+|.+|
T Consensus 231 ------is~~~~g~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~------------------~q~----l~i~V~ 282 (672)
T KOG1978|consen 231 ------ISSCHHGCGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNE------------------RQY----LFLDVP 282 (672)
T ss_pred ------cccccccccccCccceeeeecCccCCHHHHHHHHHHHhhhhcc------------------ccc----eeeecc
Confidence 3332 2467888999999999999999999999998765542 134 999999
Q ss_pred CCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000586 317 HSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 317 ps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~ 352 (1403)
.+.+||||.|+|+.|.|.++..|+..|++.+..+|.
T Consensus 283 ~~~iDvNvtPDK~~vll~~e~~vl~~l~~~l~~~~~ 318 (672)
T KOG1978|consen 283 EGCIDVNVTPDKRQVLLSNERSVLFSLRNSLVDFYN 318 (672)
T ss_pred ccceeeeeCCCcceeeccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997
No 5
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-62 Score=563.91 Aligned_cols=339 Identities=29% Similarity=0.376 Sum_probs=301.8
Q ss_pred CCCcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEecC-eeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVC-NCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 1 M~~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~g-~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
|+.|++||++|+|+|||||||.+|+.||||||||||||+||.|.|.+..| ...++|.|||.||.++||+.+|+|| +||
T Consensus 5 ~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRf-tTS 83 (694)
T KOG1979|consen 5 PRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERF-TTS 83 (694)
T ss_pred chhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHh-hhh
Confidence 56799999999999999999999999999999999999999999999654 5689999999999999999999999 999
Q ss_pred cCCCccccccccCCcccCcccchhHHHhhcccEEEEEEecCCCCeEEEEEeCceeeeeccccccCCCCeEEEEcccccCc
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQ 159 (1403)
Q Consensus 80 Ki~s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNl 159 (1403)
|+..|+||.+ +.||||||||||||++|++|+|+||++++.+||+..+.+|+.. ..+.+++..+||+|+|+|||||+
T Consensus 84 KL~kFEDL~~---lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~-~~pKpcAgk~GT~I~vedLFYN~ 159 (694)
T KOG1979|consen 84 KLTKFEDLFS---LSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMI-ATPKPCAGKQGTIITVEDLFYNM 159 (694)
T ss_pred hcchhHHHHh---hhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccc-cCCCCccCCCceEEEehHhhccC
Confidence 9999999987 4799999999999999999999999999999999999999865 34567788999999999999999
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhhCcccccCcE-EEe-ecCC
Q 000586 160 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLD-EVN-ANDG 237 (1403)
Q Consensus 160 PVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IFG~evas~L~-eIe-~e~~ 237 (1403)
|+||+.|+ +...++.+|..+|.+||+.+|+|+|+++..+....-+.+.+..+..+.++.+||..++.+|. ++. .++.
T Consensus 160 ~~Rrkal~-~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~ 238 (694)
T KOG1979|consen 160 PTRRKALR-NHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSK 238 (694)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccCc
Confidence 99999997 47889999999999999999999999997654444577777778889999999999998877 554 3333
Q ss_pred --CeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEc
Q 000586 238 --ALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRC 315 (1403)
Q Consensus 238 --~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~c 315 (1403)
.+..+|||+.+. ....|....+|||||.|....+.++|+.+|++|- | .+.+|+++|.|.+
T Consensus 239 ~l~f~~~g~Isn~n-~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yL---p--------------k~~~pFvYLsL~i 300 (694)
T KOG1979|consen 239 LLKFSAEGYISNAN-YSAKKSILVLFINGRLVESDELRHALEEVYAAYL---P--------------KGHHPFVYLSLNI 300 (694)
T ss_pred eeEEeccceEechh-hhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhc---C--------------CCCCceEEEEEec
Confidence 467899999873 3445556689999999999999999999887662 2 4578999999999
Q ss_pred CCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchh
Q 000586 316 PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVD 363 (1403)
Q Consensus 316 Pps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~~~~~~~~~s~~ 363 (1403)
||..|||||||+|++|.|.+++.|++.|++.|..-|........+-.+
T Consensus 301 ~p~~vDVNVHPTK~eV~FL~qEeIie~I~~~ie~~L~~~d~er~~~~q 348 (694)
T KOG1979|consen 301 DPENVDVNVHPTKREVHFLNQEEIIERICQQIEERLSALDTERTFLKQ 348 (694)
T ss_pred CHHHcccccCCCcceeEeecHHHHHHHHHHHHHHHHhccCcccchhhh
Confidence 999999999999999999999999999999999999887766665543
No 6
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-56 Score=506.99 Aligned_cols=305 Identities=38% Similarity=0.522 Sum_probs=264.8
Q ss_pred CCcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEecCe-eEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 2 ~~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAgAT~I~V~Id~g~-~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
++|++||++++++|+||++|.+|.+||+|||+||+||||+.|.|.+..++ ..|.|.|||.||++++++.++.++ +|||
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~-~tsk 79 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERH-ATSK 79 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCC-CcCC
Confidence 26999999999999999999999999999999999999999999997554 469999999999999999999999 9999
Q ss_pred CCCccccccccCCcccCcccchhHHHhhcccEEEEEEe-cCCCCeEEEEEeCceeeeeccccccCCCCeEEEEcccccCc
Q 000586 81 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKA-HGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQ 159 (1403)
Q Consensus 81 i~s~eDL~~~~gI~TlGFRGEALaSIa~VS~LeIiSRt-~~~~~g~~i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNl 159 (1403)
+.+.+|+.. +.++|||||||+||+++|+++|+||+ +++..+|++..+++.. ....+....+||||+|++||||+
T Consensus 80 ~~~~~~~~~---~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~GTtV~v~~lf~n~ 154 (312)
T TIGR00585 80 IQSFEDLER---IETLGFRGEALASISSVSRLTITTKTSAADGLAWQALLEGGMI--EEIKPAPRPVGTTVEVRDLFYNL 154 (312)
T ss_pred CCChhHhhc---ccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEEECCCcC--cccccccCCCccEEEEchhhccC
Confidence 998888765 47999999999999999999999999 7777888887554422 12234456899999999999999
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeC--CCCCHHH-HHHHhhCcccccCcEEEe-ec
Q 000586 160 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTC--SSSSPLA-LLISSFGIEDFSFLDEVN-AN 235 (1403)
Q Consensus 160 PVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~--~sss~ld-~L~~IFG~evas~L~eIe-~e 235 (1403)
||||+++ ++.++++..|+.++++|||+||+|+|.|.+.++ ..+.+. +..++.+ ++.++||...++.|.++. .+
T Consensus 155 p~r~~~~-~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~--~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~ 231 (312)
T TIGR00585 155 PVRRKFL-KSPKKEFRKILDLLNRYALIHPDVSFSLTHDGK--KVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWE 231 (312)
T ss_pred chhhhhc-cCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCE--EEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeeccc
Confidence 9999977 457899999999999999999999999998643 334443 3567889 599999999998998887 56
Q ss_pred CCCeEEEEEEeCCCcCCCCcce-EEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEE
Q 000586 236 DGALEISGYISSPYDSISVKAF-QYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLR 314 (1403)
Q Consensus 236 ~~~~kIsGfIS~P~~~rssKd~-QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~ 314 (1403)
...++|+|||+.|...+..+.. ||+|||||||..+.+.++|+++|+.|. + ..+||+|+|+|+
T Consensus 232 ~~~~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~---~--------------~~~~P~~vL~i~ 294 (312)
T TIGR00585 232 DGDLQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYL---P--------------KGQYPVFVLNLE 294 (312)
T ss_pred CCCEEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhc---c--------------CCCCcEEEEEEE
Confidence 7889999999999766666666 999999999999999999988766443 1 347999999999
Q ss_pred cCCCcccccccCCCCeEE
Q 000586 315 CPHSLYDLTFDPLKTHVV 332 (1403)
Q Consensus 315 cPps~VDVNVhPsKtEV~ 332 (1403)
||++.|||||||+|++|+
T Consensus 295 ~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 295 IDPELVDVNVHPDKKEVR 312 (312)
T ss_pred EChHHcccCCCCCchhhC
Confidence 999999999999999985
No 7
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.95 E-value=1.4e-27 Score=241.37 Aligned_cols=143 Identities=36% Similarity=0.479 Sum_probs=112.9
Q ss_pred CceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcC
Q 000586 1166 DAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 1245 (1403)
Q Consensus 1166 ~~rVIGQvdkkFIL~E~~dgLyIIDQHAAHERI~yErL~k~l~s~~~~sq~lL~p~Q~LllP~~e~~lLee~le~LeklG 1245 (1403)
-+++|||++++|||++.+++||+||||||||||+||+|++++..+. .+|.+| .|..+.+++.+.++++++.+.|++||
T Consensus 2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~-~~q~Ll-~P~~~~ls~~e~~~l~~~~~~L~~~G 79 (144)
T PF08676_consen 2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGE-QSQPLL-FPIELELSPQEAELLEENKEELEKLG 79 (144)
T ss_dssp T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS--EEEEE-EEEEEE--HHHHHHHHHHHHHHHHTT
T ss_pred ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCC-CceecC-CCccCCCCHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999999999987654 444444 45788999999999999999999999
Q ss_pred cEEEEeccCccccccccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcccccc
Q 000586 1246 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMF 1325 (1403)
Q Consensus 1246 Feiei~~~G~~sFG~n~~~~~~~~~tI~LrsVP~iL~~~l~~~DL~ElL~eL~et~gs~~ip~~i~elLAS~ACRsAIK~ 1325 (1403)
|+++ .||.+ ++.|++||.++........+.++|..+.+.. .. +..+.++++++|||+|||+
T Consensus 80 f~~~-------~~~~~---------~~~v~~vP~~l~~~~~~~~l~~ll~~l~~~~--~~-~~~~~~~~~~~AC~~Aik~ 140 (144)
T PF08676_consen 80 FEIE-------EFGEN---------SIIVRSVPAILREQDLEELLRELLEELQEKE--ES-PEIIEELLASMACRSAIKA 140 (144)
T ss_dssp -EEE-------EESTT---------EEEEEEEECCCTTSSHHHHHHHHHHHHCTCS--S--CCCHHHHHHHHHTTSSSSS
T ss_pred eEEE-------EecCC---------EEEEEEeCcccccccHHHHHHHHHHHHHhCC--Cc-HHHHHHHHHHHHHHHhhcC
Confidence 9988 35544 9999999999986644555667777765543 12 5567889999999999999
Q ss_pred CCCC
Q 000586 1326 GDSL 1329 (1403)
Q Consensus 1326 GD~L 1329 (1403)
||+|
T Consensus 141 g~~L 144 (144)
T PF08676_consen 141 GDKL 144 (144)
T ss_dssp S---
T ss_pred CCCC
Confidence 9987
No 8
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.92 E-value=3.3e-24 Score=260.80 Aligned_cols=248 Identities=20% Similarity=0.158 Sum_probs=188.6
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEecC-e--eEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCC
Q 000586 22 FDLTRVVEELVFNSVDAGAT-----KVFVYVGVC-N--CYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGI 93 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAgAT-----~I~V~Id~g-~--~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI 93 (1403)
..+.++|+|||+|||||+++ .|.|.+..+ . ..|.|.|||.||+++++..++.++.+|||+.+. +
T Consensus 35 r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~--------~ 106 (659)
T PRK14867 35 RSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL--------I 106 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce--------e
Confidence 34569999999999999987 799988642 2 469999999999999999999993299999753 2
Q ss_pred cccCcccchhHHHhhcccE------EEEEEecCCCC---eEEEEE--eCceeeeeccccccCCCCeEEE--EcccccCch
Q 000586 94 GTFGFRGEALASISDVSLL------EIITKAHGRPN---GYRKVM--KGSKCLYLGIDDERKDVGTTVV--SRDLFYNQP 160 (1403)
Q Consensus 94 ~TlGFRGEALaSIa~VS~L------eIiSRt~~~~~---g~~i~i--~~gk~~~~~~~~~~~~~GTTV~--V~dLFyNlP 160 (1403)
.+.|++|+||+++..++++ +|.|++.++.. ++.+.+ ++|...... .+....+||+|+ |++||||
T Consensus 107 qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~-~~~~~~~GT~Ie~~V~dLFyn-- 183 (659)
T PRK14867 107 QSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHK-VREGFWRGTRVEGEFKEVTYN-- 183 (659)
T ss_pred ccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccc-cCCCCCCCcEEEEEEeeceec--
Confidence 5889999999998877755 68888755431 333445 566654221 234467999999 9999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC----ceEEEeCCCCCHHHHHHHhhCcccccCcEEEeecC
Q 000586 161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE----DELLCTCSSSSPLALLISSFGIEDFSFLDEVNAND 236 (1403)
Q Consensus 161 VRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~----k~ll~t~~sss~ld~L~~IFG~evas~L~eIe~e~ 236 (1403)
|+ +.. |.++|+++||+||+|+|+|.+.+.. +....++ ..+.+++..++|.+ ...|..+..+.
T Consensus 184 -R~---------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp--~~~~e~~ph~~G~~-~~~Li~i~~~~ 249 (659)
T PRK14867 184 -RR---------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIP--EKPEEMKPHPYGLT-TDELLYIARKT 249 (659)
T ss_pred -hh---------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecC--cCHHHHhhccCccc-hhhceehhccC
Confidence 43 223 7899999999999999999986321 2222332 26778899999999 77899998888
Q ss_pred CCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcC
Q 000586 237 GALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCP 316 (1403)
Q Consensus 237 ~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cP 316 (1403)
+.++|+||+ .|...+.++..|+ +|.+..+.++|. .+|+...+ .++||+++|+|++|
T Consensus 250 ~~~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~---~ay~~~l~--------------~~~~P~~~L~l~i~ 305 (659)
T PRK14867 250 DSSKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLL---ENYRDSVF--------------WDTVVSCYLNFDFT 305 (659)
T ss_pred CceEEEEEe-cchhccCCCCcEE------EEccHHHHHHHH---HHHhhccc--------------CCCcceEEEEEEeC
Confidence 889999998 7888888888888 555545555553 35665443 46899999999999
Q ss_pred CC
Q 000586 317 HS 318 (1403)
Q Consensus 317 ps 318 (1403)
|-
T Consensus 306 ~~ 307 (659)
T PRK14867 306 KY 307 (659)
T ss_pred cc
Confidence 84
No 9
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.89 E-value=6.8e-23 Score=202.90 Aligned_cols=119 Identities=32% Similarity=0.437 Sum_probs=102.1
Q ss_pred HHHhhCcccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcc
Q 000586 217 LISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFL 296 (1403)
Q Consensus 217 L~~IFG~evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~~~~ 296 (1403)
+.++||.+.+++|.+++.+.+.++|+|||++|...+.+++.||+|||||||..+.+.++|+++|. ...
T Consensus 1 I~~i~G~~~~~~l~~i~~~~~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~---~~~--------- 68 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSEDEDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYR---ERL--------- 68 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEECCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHH---CTT---------
T ss_pred CeEeECHHHHhccEEEeccCCCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHh---hcc---------
Confidence 56899999999999999999999999999999888888999999999999999999999987654 222
Q ss_pred cCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000586 297 KGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 297 ~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~ 352 (1403)
+.++||+|+|+|+|||+.|||||||+|++|+|.+|+.|+++|+++|+++|+
T Consensus 69 -----~~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 69 -----PKGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp -----CTTSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred -----cCCCCceEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 146899999999999999999999999999999999999999999999984
No 10
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.88 E-value=4.2e-22 Score=200.84 Aligned_cols=125 Identities=26% Similarity=0.393 Sum_probs=111.3
Q ss_pred HHHHHHHhhCcccccCcEEEeecC--CCeEEEEEEeCC--CcCCCCcceEEEEEcCccccc-chHHHHHHHHHHhhccCC
Q 000586 213 PLALLISSFGIEDFSFLDEVNAND--GALEISGYISSP--YDSISVKAFQYVYINSRYVCK-GPIHKLLNHLAASFDCSD 287 (1403)
Q Consensus 213 ~ld~L~~IFG~evas~L~eIe~e~--~~~kIsGfIS~P--~~~rssKd~QfIFVNGRpV~~-~~I~KlIneL~~sf~sl~ 287 (1403)
+.+++.++||...+++|.+++.+. +.++|+|||+.| ...+.+++.||+|||||||.. +.+.++|+++|+.|..
T Consensus 2 l~~~i~~v~G~~~~~~li~i~~~~~~~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~-- 79 (132)
T cd03485 2 HKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYR-- 79 (132)
T ss_pred HHHHHHHHhCHHHHhccEEEeccCCCCcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhc--
Confidence 568999999999999999999887 789999999999 446778999999999999999 8999999887664431
Q ss_pred ccccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHH
Q 000586 288 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAW 351 (1403)
Q Consensus 288 ~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL 351 (1403)
+++..+||+++|+|+|||+.|||||||+|++|+|.+|+.|+++|+++|+.+|
T Consensus 80 ------------~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 80 ------------KSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred ------------cccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 0135689999999999999999999999999999999999999999999987
No 11
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.88 E-value=3.1e-22 Score=200.01 Aligned_cols=122 Identities=27% Similarity=0.357 Sum_probs=110.8
Q ss_pred HHHHHHhhCcccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCcccccc
Q 000586 214 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANN 293 (1403)
Q Consensus 214 ld~L~~IFG~evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~ 293 (1403)
++++..+||...++.|.+++.+.+.++|+|||+.|...+++++.||+|||||||..+.+.++|++.|..+ .+
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~~~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~---~~----- 73 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEAGGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDV---LH----- 73 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccCCCEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHh---cc-----
Confidence 4689999999999999999988888999999999988888999999999999999999999998765533 22
Q ss_pred CcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000586 294 GFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 294 ~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~ 352 (1403)
.++||+++|+|+|||+.|||||||+|++|+|.+|+.|+++|.++|+++|+
T Consensus 74 ---------~~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 74 ---------GGRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred ---------CCCCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999999874
No 12
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.87 E-value=4.2e-22 Score=203.20 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=113.3
Q ss_pred HHHHHHHhhCcccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhcc-----CC
Q 000586 213 PLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDC-----SD 287 (1403)
Q Consensus 213 ~ld~L~~IFG~evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~s-----l~ 287 (1403)
+.+++.++||.+.+..|.+++.+.+.++|+||||.|. +.+++.||+|||||+|..+.+.++|+++|..+.. ..
T Consensus 2 ~~~~i~~i~G~~~~~~l~~v~~~~~~~~v~G~is~p~--~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~~~~~~~ 79 (141)
T cd03486 2 ILSVFKQIYGLVLAQKLKEVSAKFQEYEVSGYISSEG--HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAVAKNKSS 79 (141)
T ss_pred HHHHHHHHhChhhhccEEEeecccCcEEEEEEEcCCC--CCCCceEEEEECCEEechHHHHHHHHHHHhhcccccccccc
Confidence 5678999999999999999999999999999999985 6789999999999999999999999988765211 11
Q ss_pred ccccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000586 288 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 288 ~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~ 352 (1403)
.+. ... ...+.+.++||+|+|+|+|||+.|||||||+|++|+|.+|+.|+.+|+++|+++|+
T Consensus 80 ~~~-~~~--~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 80 PQS-KSS--RRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccc-ccc--ccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 000 000 11223467999999999999999999999999999999999999999999999984
No 13
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.87 E-value=3.6e-22 Score=200.51 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=109.8
Q ss_pred CHHHHHHHhhCcccccCcEEEeecC----CCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCC
Q 000586 212 SPLALLISSFGIEDFSFLDEVNAND----GALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSD 287 (1403)
Q Consensus 212 s~ld~L~~IFG~evas~L~eIe~e~----~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~ 287 (1403)
++.+++..+||.+.+..|.+++.+. +.++|+||+++|... ..++.||+|||||||..+.+.++|+++|+.| .
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~~~~~~~~~~i~G~is~p~~~-~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~---l 76 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISDDDDDLGFKVKGLISNANYS-KKKIIFILFINNRLVECSALRRAIENVYANY---L 76 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEecccCCcCCcEEEEEEEcCchhc-CCCceEEEEEcCCEecCHHHHHHHHHHHHHh---C
Confidence 3578999999999999999999776 579999999999877 7789999999999999999999998765543 2
Q ss_pred ccccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHH
Q 000586 288 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAW 351 (1403)
Q Consensus 288 ~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL 351 (1403)
+ .++||+++|+|++||+.|||||||+|++|+|.+++.|+++|+++|+++|
T Consensus 77 ~--------------~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L 126 (127)
T cd03483 77 P--------------KGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKL 126 (127)
T ss_pred c--------------CCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHh
Confidence 2 3589999999999999999999999999999999999999999999887
No 14
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.87 E-value=4.2e-22 Score=242.99 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHccccCCCC-----eEEEEEecC--eeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcc
Q 000586 23 DLTRVVEELVFNSVDAGAT-----KVFVYVGVC--NCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGT 95 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT-----~I~V~Id~g--~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~T 95 (1403)
.+.++|+|||+|||||+++ .|.|.+..+ ...|.|.|||.||++++++.+|.+|.+|||+...+ .+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~--------~s 117 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE--------QS 117 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc--------cC
Confidence 4779999999999999876 688888543 35899999999999999999999995599987532 47
Q ss_pred cCcccchhHHHhhccc------EEEEEEecCCCCe--EEEEEeCce---ee-eeccccccCCCCeEEEEcccccCchhHH
Q 000586 96 FGFRGEALASISDVSL------LEIITKAHGRPNG--YRKVMKGSK---CL-YLGIDDERKDVGTTVVSRDLFYNQPVRR 163 (1403)
Q Consensus 96 lGFRGEALaSIa~VS~------LeIiSRt~~~~~g--~~i~i~~gk---~~-~~~~~~~~~~~GTTV~V~dLFyNlPVRR 163 (1403)
.|++|+||+++..++. ++|+|++.+...+ +.+.++.++ .+ .....+...++||+|+|+ ||+|+|+|+
T Consensus 118 rG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~ 196 (795)
T PRK14868 118 RGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQ 196 (795)
T ss_pred CCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhh
Confidence 8999999999888876 6999998776666 477777764 11 112233456899999999 999999987
Q ss_pred HHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEe-CCCCCHHHHHHHh----hCcccccCcEEEeecCCC
Q 000586 164 KYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCT-CSSSSPLALLISS----FGIEDFSFLDEVNANDGA 238 (1403)
Q Consensus 164 K~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t-~~sss~ld~L~~I----FG~evas~L~eIe~e~~~ 238 (1403)
| |.++|+++||+||+++|+|.+. +..+.+ .....+......+ +|.+. ..|..+....+.
T Consensus 197 k------------I~eyl~r~Al~nP~a~f~l~~~---~~~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t~~ 260 (795)
T PRK14868 197 Q------------LHDYIKHTAVVNPHARIELREP---DESLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEATDS 260 (795)
T ss_pred h------------HHHHHHHHHhhCCCeEEEEEEC---CEEEEecccccccccCchhccCCCCCcCH-HHHHHHHhccCC
Confidence 7 6789999999999999999975 344555 4455677788888 89887 667777777888
Q ss_pred eEEEEEEeCCCcC
Q 000586 239 LEISGYISSPYDS 251 (1403)
Q Consensus 239 ~kIsGfIS~P~~~ 251 (1403)
++|.||+ .|...
T Consensus 261 ~~l~gFL-~~efs 272 (795)
T PRK14868 261 YSVSGFL-QEEFT 272 (795)
T ss_pred cEeHHhh-hhhhc
Confidence 9999999 56543
No 15
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.86 E-value=1e-21 Score=193.90 Aligned_cols=121 Identities=35% Similarity=0.454 Sum_probs=110.4
Q ss_pred HHHHHHhhCcccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCcccccc
Q 000586 214 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANN 293 (1403)
Q Consensus 214 ld~L~~IFG~evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~~I~KlIneL~~sf~sl~~~~~~~ 293 (1403)
.+++.++||....+.+.+++.+.+.++|+|||+.|...+.+++.||+|||||||..+.+.++|+.+|..|..
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~~~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~-------- 73 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELESGDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLP-------- 73 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccCCCEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCc--------
Confidence 468999999999999999999999999999999998778899999999999999999999999887654421
Q ss_pred CcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHH
Q 000586 294 GFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAW 351 (1403)
Q Consensus 294 ~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL 351 (1403)
..+||+|+|+|+||++.|||||||+|++|+|.+|+.|+++|+++|+++|
T Consensus 74 ---------~~~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 74 ---------KGRYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred ---------CCCCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999999999999999999875
No 16
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.86 E-value=5.1e-21 Score=191.33 Aligned_cols=134 Identities=31% Similarity=0.363 Sum_probs=105.9
Q ss_pred ceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCC-ccccccCcceeeecCHHHHHHHHHHHHHHHHcC
Q 000586 1167 AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEG-KSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 1245 (1403)
Q Consensus 1167 ~rVIGQvdkkFIL~E~~dgLyIIDQHAAHERI~yErL~k~l~s~~~-~sq~lL~p~Q~LllP~~e~~lLee~le~LeklG 1245 (1403)
+++|||++++||+++.+++|||||||||||||+||+|++.+..+.. .+|.+| .|..+.+++.+.++++++.+.|++||
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll-~P~~i~l~~~e~~~l~~~~~~l~~~G 80 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLL-IPVILELSPEEAALLEEHQELLARLG 80 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccC-CCEEEEcCHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999998754433 244444 55789999999999999999999999
Q ss_pred cEEEEeccCccccccccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHh
Q 000586 1246 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKA 1318 (1403)
Q Consensus 1246 Feiei~~~G~~sFG~n~~~~~~~~~tI~LrsVP~iL~~~l~~~DL~ElL~eL~et~gs~~ip~~i~elLAS~A 1318 (1403)
|+++ .||.+ ++.|+++|.++........+.+++..+.+.. ....+..+.++++++|
T Consensus 81 f~~~-------~~~~~---------~~~i~~vP~~l~~~~~~~~l~~ll~~l~~~~-~~~~~~~~~~~la~~A 136 (136)
T smart00853 81 FELE-------IFGGQ---------SVILRSVPALLRQQNLQELIPELLDLLAEGG-STSLPQLVEALLASLA 136 (136)
T ss_pred eEEE-------ccCCC---------EEEEEeECccccCcCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHhhC
Confidence 9988 34433 8999999998876544556667777766532 2334555566777775
No 17
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.84 E-value=8.4e-21 Score=194.06 Aligned_cols=122 Identities=30% Similarity=0.436 Sum_probs=109.7
Q ss_pred HHHHHHHhhCcccccCcEEEeecC-----------------CCeEEEEEEeCC--CcCCCCcceEEEEEcCcccccchHH
Q 000586 213 PLALLISSFGIEDFSFLDEVNAND-----------------GALEISGYISSP--YDSISVKAFQYVYINSRYVCKGPIH 273 (1403)
Q Consensus 213 ~ld~L~~IFG~evas~L~eIe~e~-----------------~~~kIsGfIS~P--~~~rssKd~QfIFVNGRpV~~~~I~ 273 (1403)
+.+++..+||...++.|.+++.+. ..++|+|||+.| ...+.+++.||+|||||||..+.+.
T Consensus 2 ~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l~ 81 (142)
T cd03484 2 IKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKVA 81 (142)
T ss_pred HHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHHH
Confidence 568999999999998999988766 779999999999 6677889999999999999999999
Q ss_pred HHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000586 274 KLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 274 KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de~~Il~lI~kaI~~fL~ 352 (1403)
++|+..|..|. ..+||+++|+|+||++.|||||||+|++|+|.+++.|+++|+++|+.+|.
T Consensus 82 ~aI~~~y~~~~------------------~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~~ 142 (142)
T cd03484 82 KLINEVYKSFN------------------SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELFE 142 (142)
T ss_pred HHHHHHHHHhc------------------CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHhC
Confidence 99987665432 25899999999999999999999999999999999999999999999873
No 18
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.84 E-value=5.2e-20 Score=225.78 Aligned_cols=245 Identities=18% Similarity=0.131 Sum_probs=170.7
Q ss_pred CcccCChHHHHHHhcCCcc--cCHHHHHHHHHHcccc---C-CCCeEEEEEecCeeEEEEEeCCCCCCHHH--------H
Q 000586 3 TINRLPEAVRNTVRSGTVL--FDLTRVVEELVFNSVD---A-GATKVFVYVGVCNCYVKVVDDGSGISRDG--------L 68 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI--~sp~sVVkELVENSLD---A-gAT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L 68 (1403)
.|+.|..-=.-+.+-|=+| ++|.++|+|||+||+| | +|+.|.|.|+.+ ..|+|.|||+|||.++ +
T Consensus 8 ~i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 8 DIEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred hceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHH
Confidence 3555654444456666666 5789999999999999 9 699999999876 6899999999999998 8
Q ss_pred HHhh-cccccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceee-eec-cccc-c
Q 000586 69 VLLG-ERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCL-YLG-IDDE-R 143 (1403)
Q Consensus 69 ~~v~-~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~-~~~-~~~~-~ 143 (1403)
+.++ .+| +|||+.+. +++ .|.||||+||++++++|+ ++|.|+..+.. |...+.+|... ... +.+. .
T Consensus 87 e~v~t~lh-agsK~~~~--~~~----~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~ 157 (625)
T TIGR01055 87 EVILTTLH-AGGKFSNK--NYH----FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGK 157 (625)
T ss_pred HHhhhccc-ccCCCCCC--cce----ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCC
Confidence 8886 888 99999753 444 589999999999999998 99999976643 88889888652 111 1122 2
Q ss_pred CCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCc-eEEEeCCCCCHHHHHHHhh-
Q 000586 144 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLISSF- 221 (1403)
Q Consensus 144 ~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~ld~L~~IF- 221 (1403)
..+||+|++ +|+| +++. +...++..|.++++++|++||+|+|+|.+..... ..+... ..+.+.+..+.
T Consensus 158 ~~~GT~V~F------~PD~-~~F~-~~~~e~~~i~~~l~~lA~lnpgi~~~l~der~~~~~~f~~~--~Gi~~yv~~l~~ 227 (625)
T TIGR01055 158 RLTGTSVHF------TPDP-EIFD-SLHFSVSRLYHILRAKAVLCRGVEIEFEDEVNNTKALWNYP--DGLKDYLSEAVN 227 (625)
T ss_pred CCCCeEEEE------EECH-HHCC-CCccCHHHHHHHHHHHHhhCCCcEEEEeecCCCceeEEecC--chHHHHHHHHhc
Confidence 458999998 7999 6665 4566788899999999999999999999743221 223332 34555554433
Q ss_pred Cccccc-CcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCccccc
Q 000586 222 GIEDFS-FLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 269 (1403)
Q Consensus 222 G~evas-~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~ 269 (1403)
+..... .........+++.++--+.-. .......++-|||+-+-..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~ve~al~~~--~~~~~~~~~SFvN~I~T~~ 274 (625)
T TIGR01055 228 GDNTLPPKPFSGNFEGDDEAVEWALLWL--PEGGELFMESYVNLIPTPQ 274 (625)
T ss_pred CCCCCCCCceEEEEeeCCceEEEEEEEe--cCCCCEEEEEeeccccCCC
Confidence 221111 111111112334444333321 1112356789999988765
No 19
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.84 E-value=5.6e-20 Score=224.84 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=192.0
Q ss_pred HHHHHHHHHHccccCC----CCeEEEEEecCeeEEEEEeCCCCCCHHHH--------HHhhc-ccccCCcCCCccccccc
Q 000586 24 LTRVVEELVFNSVDAG----ATKVFVYVGVCNCYVKVVDDGSGISRDGL--------VLLGE-RHAATSKLGHLADMDDA 90 (1403)
Q Consensus 24 p~sVVkELVENSLDAg----AT~I~V~Id~g~~~I~V~DNG~GIs~eDL--------~~v~~-rhGaTSKi~s~eDL~~~ 90 (1403)
+.++|+|||+||+||+ |+.|.|.|+.++ .|+|.|||+|||.+.- +.++. .| +++|+.+ ...
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lh-ag~kfd~---~~~- 75 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLH-AGGKFDD---DAY- 75 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhc-ccCCCCC---CCc-
Confidence 3468999999999998 999999998765 8999999999996532 23333 34 6677643 221
Q ss_pred cCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeC-ceeee-eccccccCCCCeEEEEcccccCchhHHHHhh
Q 000586 91 TGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKG-SKCLY-LGIDDERKDVGTTVVSRDLFYNQPVRRKYMQ 167 (1403)
Q Consensus 91 ~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~-gk~~~-~~~~~~~~~~GTTV~V~dLFyNlPVRRK~L~ 167 (1403)
..+.||||+||++++++| .++|+|+..+. .|.+.+.. |.... ..+......+||+|+. +|+|++|..
T Consensus 76 --k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~F~~ 145 (594)
T smart00433 76 --KVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEIFGM 145 (594)
T ss_pred --cccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHHhCC
Confidence 158999999999999996 69999998753 48888854 66432 1122334579999994 799999975
Q ss_pred cChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhhCccccc--CcEEEeecCCCeEEEEEE
Q 000586 168 SSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFS--FLDEVNANDGALEISGYI 245 (1403)
Q Consensus 168 ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IFG~evas--~L~eIe~e~~~~kIsGfI 245 (1403)
. ...++..|.+.++.+|+++|+|+|+|.+....... .....+++.+.+..+.+....- ....+..+..++.++..+
T Consensus 146 ~-~~~~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~-~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~~~~veval 223 (594)
T smart00433 146 T-TDDDFELLKRRLRELAFLNKGVKITLNDERSDEEE-TFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAF 223 (594)
T ss_pred c-ccchHHHHHHHHHHHHhcCCCcEEEEeccCCCcce-EEECCCCHHHHHHHHhCCCCcccCCCeEEEEEeCCcEEEEEE
Confidence 3 36778899999999999999999999975322211 1223456667776665543211 112233344567788887
Q ss_pred eCCCcCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCcEEEEEEEcC
Q 000586 246 SSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCP 316 (1403)
Q Consensus 246 S~P~~~rssKd~QfIFVNGRpV~~~---------~I~KlIneL~~sf~sl~~~~~~~~~~~~~rs~~~ryP~fVLnI~cP 316 (1403)
.-.. .....++-|||+.+...+ .|.+.|+..++..... . + ..-.........++||++.+|
T Consensus 224 ~~~~---~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~-k----~--~~i~~~diregl~~vIsvki~ 293 (594)
T smart00433 224 QYTD---GYSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKL-K----E--KNIKGEDVREGLTAFISVKIP 293 (594)
T ss_pred EccC---CCCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCcc-c----c--CCCChhhHhhCeEEEEEEEEc
Confidence 7532 235689999999998742 3455555443322110 0 0 001111235788999999998
Q ss_pred CCcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000586 317 HSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 317 ps~VDVNVhPsKtEV~F~de-~~Il~lI~kaI~~fL~~~ 354 (1403)
.-.+|= .+|...-=..- ..|-.++.+.+..++..+
T Consensus 294 ~P~Feg---QTK~kL~n~~~~~~v~~~v~~~l~~~l~~n 329 (594)
T smart00433 294 EPQFEG---QTKEKLGTSEVRFGVEKIVSECLLSFLEEN 329 (594)
T ss_pred hheecc---cccccccChhHHHHHHHHHHHHHHHHHHHC
Confidence 655542 33433221111 123344455555555443
No 20
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.81 E-value=2.3e-18 Score=211.91 Aligned_cols=243 Identities=19% Similarity=0.204 Sum_probs=164.9
Q ss_pred cccCChHHHHHHhcCCccc-----CHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHH--------
Q 000586 4 INRLPEAVRNTVRSGTVLF-----DLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRD-------- 66 (1403)
Q Consensus 4 Ik~LpeeVi~kIaSGeVI~-----sp~sVVkELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~e-------- 66 (1403)
|+.|..-=.-+.+-|-+|- .+.++|+|||+||+| || |+.|.|.|+.++ .|+|.|||+|||.+
T Consensus 13 i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~ki~ 91 (638)
T PRK05644 13 IQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG-SITVTDNGRGIPVDIHPKTGKP 91 (638)
T ss_pred CeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC-cEEEEEeCccccCCccCCCCCC
Confidence 5555543334555555553 457899999999999 99 999999998654 89999999999986
Q ss_pred HHHHh-hcccccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceeee-ecccccc
Q 000586 67 GLVLL-GERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDER 143 (1403)
Q Consensus 67 DL~~v-~~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~-~~~~~~~ 143 (1403)
.++.+ +..| ++||+.+ +.+. .|.||||+||++++++|+ ++|+|+..+. +|...+.+|.... .......
T Consensus 92 ~~e~i~~~lh-ag~kfd~--~~yk----~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~~ 162 (638)
T PRK05644 92 AVEVVLTVLH-AGGKFGG--GGYK----VSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGET 162 (638)
T ss_pred chHHheeeec-ccCccCC--Cccc----ccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCCc
Confidence 22333 3445 7777753 2222 489999999999999998 9999987653 7999999887541 1111122
Q ss_pred CCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC---ceEEEeCCCCCHHHHHHHh
Q 000586 144 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE---DELLCTCSSSSPLALLISS 220 (1403)
Q Consensus 144 ~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~---k~ll~t~~sss~ld~L~~I 220 (1403)
...||+|++ +|+|++| . +...++..|.+.|+.+|+++|+|+|+|.+.... ...+... .++.+.+..+
T Consensus 163 ~~~GT~I~F------~Pd~~~F-~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~--~Gl~dyv~~l 232 (638)
T PRK05644 163 DETGTTVTF------KPDPEIF-E-TTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYE--GGIKEYVEYL 232 (638)
T ss_pred CCCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcC--CCHHHHHHHH
Confidence 578999994 8999998 4 456678889999999999999999999975311 1234433 3455555543
Q ss_pred hCcc-cc-cCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCccccc
Q 000586 221 FGIE-DF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 269 (1403)
Q Consensus 221 FG~e-va-s~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~ 269 (1403)
.... .. .....+....+++.++..+.-. . .....++-|||+-+-..
T Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~veval~~~-~--~~~~~~~SFvN~I~T~~ 280 (638)
T PRK05644 233 NRNKEPLHEEPIYFEGEKDGIEVEVAMQYN-D--GYSENILSFANNINTHE 280 (638)
T ss_pred hcCCCcCCCCCeEEEeeccCeEEEEEEEec-C--CCceEEEEEECcccCCC
Confidence 3221 11 1112233333445565555432 1 22345789999998764
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.81 E-value=2.6e-18 Score=211.47 Aligned_cols=318 Identities=18% Similarity=0.166 Sum_probs=202.2
Q ss_pred cccCChHHHHHHhcCCc-----ccCHHHHHHHHHHccccC----CCCeEEEEEecCeeEEEEEeCCCCCCHHHHHH----
Q 000586 4 INRLPEAVRNTVRSGTV-----LFDLTRVVEELVFNSVDA----GATKVFVYVGVCNCYVKVVDDGSGISRDGLVL---- 70 (1403)
Q Consensus 4 Ik~LpeeVi~kIaSGeV-----I~sp~sVVkELVENSLDA----gAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~---- 70 (1403)
|+.|..-=.-+.+-|-+ ...|.++|+|||+||+|| +|+.|.|.|+.++ .|+|.|||.|||.+..+.
T Consensus 13 i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg-~I~V~DnGrGIP~~~~~~~~~~ 91 (631)
T PRK05559 13 IEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG-SVSVRDNGRGIPVGIHPEEGKS 91 (631)
T ss_pred CeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC-cEEEEEcCCCCCcccccccCCc
Confidence 55555333334444444 478899999999999998 8999999998764 799999999999998876
Q ss_pred ----hhcc-cccCCcCCCccccccccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeee-e-ccccc
Q 000586 71 ----LGER-HAATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-L-GIDDE 142 (1403)
Q Consensus 71 ----v~~r-hGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~-~-~~~~~ 142 (1403)
++.+ | +|||+.+ +.++ .+.||+|+|+++++++| .++|+|+..+. .|...+.+|.... . .+...
T Consensus 92 ~~E~v~t~lh-agsKf~~--~~yk----~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~~ 162 (631)
T PRK05559 92 GVEVILTKLH-AGGKFSN--KAYK----FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGTA 162 (631)
T ss_pred chheeeeecc-ccCccCC--cccc----ccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccccc
Confidence 6666 7 9999975 3444 58999999999999996 69999987543 3888888776431 0 11222
Q ss_pred c-CCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceEEEeCCCCCHHHHHHHhh
Q 000586 143 R-KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSF 221 (1403)
Q Consensus 143 ~-~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~ld~L~~IF 221 (1403)
. ..+||+|++ +|+|++| . +...+...|.++|+++|+++|+|+|+|.+.. ....+.+. .++.+.+..++
T Consensus 163 ~~~~~GT~V~f------~PD~~iF-~-~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~ 231 (631)
T PRK05559 163 GKRKTGTRVRF------WPDPKIF-D-SPKFSPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELN 231 (631)
T ss_pred cCCCCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHh
Confidence 2 578999999 6999988 3 4556678899999999999999999999753 23345443 45777777776
Q ss_pred Ccc-ccc-C-cEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCcc
Q 000586 222 GIE-DFS-F-LDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDSW 289 (1403)
Q Consensus 222 G~e-vas-~-L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~---------~I~KlIneL~~sf~sl~~~ 289 (1403)
... ... . ...++.+.....++..+.-. ......++-|||+-+-..+ .|.+.|+...+..+ +..
T Consensus 232 ~~~~~i~~~~~i~~~~~~~~~~veval~~~---~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~-l~k- 306 (631)
T PRK05559 232 EGKETLPEEFVGSFEGEAEGEAVEWALQWT---DEGGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRN-LLP- 306 (631)
T ss_pred CCCCccCCCCceEEeeeeccceEEEEEEec---CCCCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC-ccc-
Confidence 532 111 1 12233222345555444421 1123478899999887652 23344444322111 100
Q ss_pred ccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCC-chHHHHHHHHHHHHHHhhh
Q 000586 290 KANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 290 ~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~d-e~~Il~lI~kaI~~fL~~~ 354 (1403)
.+... ........-++||++.+|--.+|= .+|...-=.. ...|-.++.+.+..+|..+
T Consensus 307 --~~~~l--~~~diregl~~vvsvki~~P~Feg---QTK~kL~n~~v~~~v~~~v~~~l~~~l~~n 365 (631)
T PRK05559 307 --KGKKL--EGEDVREGLAAVLSVKIPEPQFEG---QTKEKLGSREARRFVSGVVKDAFDLWLNQN 365 (631)
T ss_pred --cccCC--ChhhHhhceEEEEEEEcCCCcccC---cccccccCHhHhhhhhhHHHHHHHHHHHHC
Confidence 00000 011123456788888887543331 3343322211 1234455566666666443
No 22
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.81 E-value=9.4e-19 Score=216.24 Aligned_cols=321 Identities=17% Similarity=0.201 Sum_probs=195.8
Q ss_pred CcccCChHHHHHHhcCCcc-----cCHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHHH------
Q 000586 3 TINRLPEAVRNTVRSGTVL-----FDLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRDG------ 67 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI-----~sp~sVVkELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~eD------ 67 (1403)
.|+.|..-=.-+.+-|-+| ..+.++|+|||+||+| || |+.|.|.|+.++ .|+|.|||+||+.+-
T Consensus 5 ~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 5 SIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG-SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred HCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC-cEEEEEeCCCcCccccCcCCC
Confidence 4666665555566666666 5678999999999999 99 999999998654 499999999999761
Q ss_pred --HHHh-hcccccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceeee-eccccc
Q 000586 68 --LVLL-GERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDE 142 (1403)
Q Consensus 68 --L~~v-~~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~-~~~~~~ 142 (1403)
++.+ +..| ++||+.+ +.+. .|.||||+||++++++|+ ++|+|+..+. .|...+.+|.... ......
T Consensus 84 ~~~e~i~~~l~-ag~kf~~--~~~k----~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~~~ 154 (654)
T TIGR01059 84 SAVEVVLTVLH-AGGKFDK--DSYK----VSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVVGE 154 (654)
T ss_pred CchHHheeeec-ccCccCC--Ccce----ecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceeccC
Confidence 2223 3334 6666543 2222 589999999999999998 9999987653 3888888886532 112334
Q ss_pred cCCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC---ceEEEeCCCCCHHHHHHH
Q 000586 143 RKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE---DELLCTCSSSSPLALLIS 219 (1403)
Q Consensus 143 ~~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~---k~ll~t~~sss~ld~L~~ 219 (1403)
....||+|+ |++.|+ +|. +...++..|.+.|+++|++||+|+|+|.+.... ...+.+. ..+.+.+..
T Consensus 155 ~~~~GT~V~----F~pdp~--~F~--~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~--~Gl~~yv~~ 224 (654)
T TIGR01059 155 TKKTGTTVR----FWPDPE--IFE--TTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYE--GGIKSFVKY 224 (654)
T ss_pred CCCCCcEEE----EEEChH--HhC--CcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcC--CcHHHHHHH
Confidence 567999999 888887 565 356678889999999999999999999975311 2234443 334444443
Q ss_pred hhCcc-cc-cCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCc
Q 000586 220 SFGIE-DF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDS 288 (1403)
Q Consensus 220 IFG~e-va-s~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~---------~I~KlIneL~~sf~sl~~ 288 (1403)
+-... .. .....+..+.+++.++..+.-. ......++-|||+-+-..+ .|.+.|+...+..+ +..
T Consensus 225 l~~~~~~l~~~~i~~~~~~~~~~veva~~~~---~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~-l~K 300 (654)
T TIGR01059 225 LNRNKEPLHEEIIYIKGEKEGIEVEVALQWN---DGYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNK-LLK 300 (654)
T ss_pred HhcCCCcCCCCCeEEEecccCeEEEEEEEec---CCCceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhC-ccc
Confidence 32111 11 1223333333456666555532 1234456899999876542 23333333221111 100
Q ss_pred cccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000586 289 WKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 289 ~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de-~~Il~lI~kaI~~fL~~~ 354 (1403)
... ..-........-++|+++.++.-.+| ..+|...-=..- ..+..++.+.+..+|.++
T Consensus 301 --~~~--~~i~~~diregl~~vvsv~i~~P~F~---gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n 360 (654)
T TIGR01059 301 --ESK--PNLTGEDIREGLTAVISVKVPDPQFE---GQTKTKLGNSEVRSIVESLVYEKLTEFFEEN 360 (654)
T ss_pred --ccC--CCCCHHHHhhccEEEEEEecCCCccc---CcccccccChhHHHHHHHHHHHHHHHHHHhC
Confidence 000 00011112345678888888754443 234443321111 224455566666666543
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.78 E-value=3.6e-18 Score=212.05 Aligned_cols=243 Identities=18% Similarity=0.183 Sum_probs=168.7
Q ss_pred CcccCChHHHHHHhcCCcc------cCHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHH------
Q 000586 3 TINRLPEAVRNTVRSGTVL------FDLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRD------ 66 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI------~sp~sVVkELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~e------ 66 (1403)
.|+.|..--.-+.+-|-+| ..+.++|+|||+||+| || |+.|.|.|+.++ .|+|.|||.|||.+
T Consensus 11 ~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg-sIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 11 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG-SVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred HCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC-eEEEEEcCCcccCCcccccC
Confidence 3566654444455556555 3468999999999999 99 999999998754 79999999999987
Q ss_pred ----HHHHhhcccccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceeee-eccc
Q 000586 67 ----GLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGID 140 (1403)
Q Consensus 67 ----DL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~-~~~~ 140 (1403)
++.. +.+| +|||+.+ |.++ -+.||+|+|+++++++|+ ++|+|+..+. .|+..+.+|.... ....
T Consensus 90 ~~~~Elvl-t~lh-AggKfd~--~~yk----vSgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~ 159 (756)
T PRK14939 90 VSAAEVIM-TVLH-AGGKFDQ--NSYK----VSGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVV 159 (756)
T ss_pred Cchhhhee-eeec-ccCCCCC--Cccc----ccCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCcccc
Confidence 4443 4778 9999985 6665 379999999999999997 9999987654 4888888886432 1111
Q ss_pred cccCCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCc-eEEEeCCCCCHHHHHHH
Q 000586 141 DERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLIS 219 (1403)
Q Consensus 141 ~~~~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~ld~L~~ 219 (1403)
.....+||+|++ +|.|++| . +..-++..|.+.|+.+|+.||+|+|+|.+...+. ..+...+ .+.+.+..
T Consensus 160 g~~~~~GT~V~F------~PD~~iF-~-~~~~~~~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~eg--Gi~~fv~~ 229 (756)
T PRK14939 160 GETDKTGTEVRF------WPSPEIF-E-NTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEG--GIKAFVEY 229 (756)
T ss_pred CCcCCCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCC--hHHHHHHH
Confidence 122578999999 7999999 3 4566778899999999999999999999753222 2344432 33333333
Q ss_pred hhCc-ccc-cCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCccccc
Q 000586 220 SFGI-EDF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 269 (1403)
Q Consensus 220 IFG~-eva-s~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~ 269 (1403)
+-.. ... .....+..+.+++.++..+.-. ......++-|||+-+-..
T Consensus 230 l~~~~~~~~~~~i~~~~~~~~~~veval~~~---~~~~e~~~SFvN~I~T~~ 278 (756)
T PRK14939 230 LNRNKTPLHPNIFYFSGEKDGIGVEVALQWN---DSYQENVLCFTNNIPQRD 278 (756)
T ss_pred HhcCCCcCCCCceEEEeeeCCeEEEEEEEEc---CCCceeEEEEECcccCCC
Confidence 2111 111 1122333344556666555421 122445789999988654
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.77 E-value=2.3e-18 Score=205.17 Aligned_cols=160 Identities=24% Similarity=0.293 Sum_probs=127.1
Q ss_pred ccCHHHHHHHHHHccccCCCC-----eEEEEEec-C--eeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccC
Q 000586 21 LFDLTRVVEELVFNSVDAGAT-----KVFVYVGV-C--NCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATG 92 (1403)
Q Consensus 21 I~sp~sVVkELVENSLDAgAT-----~I~V~Id~-g--~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~g 92 (1403)
+..+.++|+|||+||+||+++ .|.|.+.. + ...|.|.|||.||++++++.++.++.+|||+.+.
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~-------- 97 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRI-------- 97 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccccc--------
Confidence 456889999999999999886 68888853 2 2479999999999999999999984399998641
Q ss_pred CcccCcccchhHHHhhccc------EEEEEEecCCCCeEEEEEe------CceeeeeccccccCCCCeEEEEcccccCch
Q 000586 93 IGTFGFRGEALASISDVSL------LEIITKAHGRPNGYRKVMK------GSKCLYLGIDDERKDVGTTVVSRDLFYNQP 160 (1403)
Q Consensus 93 I~TlGFRGEALaSIa~VS~------LeIiSRt~~~~~g~~i~i~------~gk~~~~~~~~~~~~~GTTV~V~dLFyNlP 160 (1403)
..++|++|+||+++..+|+ ++|+|++.+...++.+.+. +|.............+||+|+|+ |+|+|
T Consensus 98 ~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~~~~ 175 (488)
T TIGR01052 98 IQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FKGVS 175 (488)
T ss_pred cccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--ECCce
Confidence 2578999999999998886 8999999877777888773 55543211111112479999999 99999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCC
Q 000586 161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME 199 (1403)
Q Consensus 161 VRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~ 199 (1403)
+|++. .+|.++|+++|++||+++|+|.+.+
T Consensus 176 ~r~~k---------~~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 176 YRRSK---------QGVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred eeccH---------HHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 98421 4788999999999999999999753
No 25
>PRK05218 heat shock protein 90; Provisional
Probab=99.76 E-value=1.4e-17 Score=204.52 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=167.2
Q ss_pred HHHHHHhcCCcccCHHHHHHHHHHccccC----------------CCC--eEEEEEecCeeEEEEEeCCCCCCHHHHHHh
Q 000586 10 AVRNTVRSGTVLFDLTRVVEELVFNSVDA----------------GAT--KVFVYVGVCNCYVKVVDDGSGISRDGLVLL 71 (1403)
Q Consensus 10 eVi~kIaSGeVI~sp~sVVkELVENSLDA----------------gAT--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v 71 (1403)
.+...|.. ....++..+++|||+||.|| ++. .|.|.++.++..|+|+|||+||+.+|+...
T Consensus 14 ~ll~ll~~-~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~~ 92 (613)
T PRK05218 14 QLLHLMIH-SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIEN 92 (613)
T ss_pred HHHHHHhh-hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHHH
Confidence 34455554 45688999999999999999 333 577777776667999999999999999999
Q ss_pred hcccccCC-------cCCCccccccccCCcccCcccchhHHHhhcc-cEEEEEEecC-CCCeEEEEEeCceeeeeccccc
Q 000586 72 GERHAATS-------KLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHG-RPNGYRKVMKGSKCLYLGIDDE 142 (1403)
Q Consensus 72 ~~rhGaTS-------Ki~s~eDL~~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~-~~~g~~i~i~~gk~~~~~~~~~ 142 (1403)
+.++ ++| |+....+- ....+|..|.|++|+..++ +|+|+||+.+ +..++.+...++.... +.+.
T Consensus 93 l~~i-a~Sg~~~f~~k~~~~~~~----~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~--i~~~ 165 (613)
T PRK05218 93 LGTI-AKSGTKEFLEKLKGDQKK----DSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYT--IEEI 165 (613)
T ss_pred HHhh-ccccchhHHHHhhccccc----ccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeE--EeEC
Confidence 9999 777 34221100 1145788888888888886 7999999977 6678888888765432 2222
Q ss_pred -cCCCCeEEEEcccccCchhHHHHhhcChHHH---HHHHHHHHHHHH--hhCCCeEE-----EEEeCCCCceEEEeCCCC
Q 000586 143 -RKDVGTTVVSRDLFYNQPVRRKYMQSSPKKV---LHSVKKCVLRIA--LVHPKVSF-----KFIDMESEDELLCTCSSS 211 (1403)
Q Consensus 143 -~~~~GTTV~V~dLFyNlPVRRK~L~ss~kke---~~~Ik~lL~~yA--Li~P~IsF-----sL~~~~~~k~ll~t~~ss 211 (1403)
...+||+|+|. ++. ...+ ..+|+++|.+|| +.+| |.| .+.+ ..+.+|... ..
T Consensus 166 ~~~~~GT~I~l~------------Lk~-~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in--~~~~~w~~~-~~ 228 (613)
T PRK05218 166 EKEERGTEITLH------------LKE-DEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETIN--SASALWTRS-KS 228 (613)
T ss_pred CCCCCCcEEEEE------------ECc-chhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeec--CCccceecC-Cc
Confidence 24799999994 222 2222 377999999999 8888 777 2332 234445443 33
Q ss_pred CHHHHHHHhhCccc----ccCcEEEeec-CCCeEEEEEEeCCCcC------CCCcceEEEEEcCcccccc
Q 000586 212 SPLALLISSFGIED----FSFLDEVNAN-DGALEISGYISSPYDS------ISVKAFQYVYINSRYVCKG 270 (1403)
Q Consensus 212 s~ld~L~~IFG~ev----as~L~eIe~e-~~~~kIsGfIS~P~~~------rssKd~QfIFVNGRpV~~~ 270 (1403)
...+.....|+... ...|..+... .+.+.+.|++..|... +..+..+.+|||+|+|.+.
T Consensus 229 ~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~ 298 (613)
T PRK05218 229 EITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDD 298 (613)
T ss_pred cccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCc
Confidence 55566666665544 3457788854 4569999999988654 4467789999999999763
No 26
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.65 E-value=1.7e-15 Score=182.61 Aligned_cols=156 Identities=22% Similarity=0.203 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHccccCCCC-----eEEEEEec-----CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccC
Q 000586 23 DLTRVVEELVFNSVDAGAT-----KVFVYVGV-----CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATG 92 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT-----~I~V~Id~-----g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~g 92 (1403)
.+.++|+|||+||+||+++ .|.|.+.. +...|.|.|||.||++++++.++.++.+|||+.+.
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-------- 107 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-------- 107 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc--------
Confidence 3689999999999999876 57877752 23689999999999999999999886588987542
Q ss_pred CcccCcccchhHHHhhccc------EEEEEEecCCCCeEEEEEe------CceeeeeccccccCCCCeEEEEcccccCch
Q 000586 93 IGTFGFRGEALASISDVSL------LEIITKAHGRPNGYRKVMK------GSKCLYLGIDDERKDVGTTVVSRDLFYNQP 160 (1403)
Q Consensus 93 I~TlGFRGEALaSIa~VS~------LeIiSRt~~~~~g~~i~i~------~gk~~~~~~~~~~~~~GTTV~V~dLFyNlP 160 (1403)
..+.|++|+||++...++. ++|.|++.++..++.+.+. .+........+....+||+|+|. |+.++|
T Consensus 108 ~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~ 186 (535)
T PRK04184 108 RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWY 186 (535)
T ss_pred ccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcCh
Confidence 1478999999988776653 7899998776556666653 23322111112346799999999 888887
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeC
Q 000586 161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDM 198 (1403)
Q Consensus 161 VRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~ 198 (1403)
.| ...|.++|+++|++||+++|++.+.
T Consensus 187 ~~-----------~~~I~e~i~r~Al~nP~~~~~l~~~ 213 (535)
T PRK04184 187 RA-----------KQRIYEYLKRTAIVNPHARITFKDP 213 (535)
T ss_pred hh-----------HHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 54 3457889999999999999999964
No 27
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.48 E-value=1.3e-13 Score=130.84 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=88.7
Q ss_pred HHHHHHhhCcccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccc-cchHHHHHHHHHHhhccCCccccc
Q 000586 214 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVC-KGPIHKLLNHLAASFDCSDSWKAN 292 (1403)
Q Consensus 214 ld~L~~IFG~evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~-~~~I~KlIneL~~sf~sl~~~~~~ 292 (1403)
.+++..+||....+.+..++.+...++|+|+++.|...+..++.||+|||||++. .+.+.++|+..+..+-.
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~------- 74 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGESDGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN------- 74 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccCCCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc-------
Confidence 4678899999887788889888888999999999877677889999999999999 88888888776543210
Q ss_pred cCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEE
Q 000586 293 NGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVV 332 (1403)
Q Consensus 293 ~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~ 332 (1403)
+....++|+++|+|.||++.+||||||+|++|.
T Consensus 75 -------~~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 75 -------GDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred -------ccCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 112468999999999999999999999999984
No 28
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.46 E-value=2.8e-13 Score=157.53 Aligned_cols=165 Identities=20% Similarity=0.200 Sum_probs=120.0
Q ss_pred cccCHHHHHHHHHHccccCCCC-----eEEEEEec---CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCcccccccc
Q 000586 20 VLFDLTRVVEELVFNSVDAGAT-----KVFVYVGV---CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDAT 91 (1403)
Q Consensus 20 VI~sp~sVVkELVENSLDAgAT-----~I~V~Id~---g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~ 91 (1403)
-+-++.++|+|||+|||||.-. .|.|+|+. +-..+.|.|||.||+++.++.+|.+..++||++...+ .+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q---sR 109 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ---SR 109 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh---cc
Confidence 3567899999999999999744 57777753 3358999999999999999999988779999964322 23
Q ss_pred CCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEE--EeC--ce--eeee-ccccccCCCCeEEEEcccccCchhHH
Q 000586 92 GIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKV--MKG--SK--CLYL-GIDDERKDVGTTVVSRDLFYNQPVRR 163 (1403)
Q Consensus 92 gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~--i~~--gk--~~~~-~~~~~~~~~GTTV~V~dLFyNlPVRR 163 (1403)
|.+.+|..|..|+|....++ ++|+|+|.++..++... ++- +. .+.. +.......+||+|++. |=.+++.++
T Consensus 110 GqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~ 188 (538)
T COG1389 110 GQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAK 188 (538)
T ss_pred ccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhc
Confidence 45778888888999999886 99999998866655443 321 11 1111 1223345799999996 333322222
Q ss_pred HHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeC
Q 000586 164 KYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDM 198 (1403)
Q Consensus 164 K~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~ 198 (1403)
+ +.+.++|++.|+++|+..|.|.+-
T Consensus 189 ~----------qgi~eYlkrtaiinPhA~I~l~dP 213 (538)
T COG1389 189 R----------QGIYEYLKRTAIINPHARIVLKDP 213 (538)
T ss_pred c----------cCHHHHHHHHhhcCCceEEEEECC
Confidence 1 226678999999999999999864
No 29
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.35 E-value=4e-13 Score=136.32 Aligned_cols=100 Identities=28% Similarity=0.341 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEecC---eeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCcc
Q 000586 23 DLTRVVEELVFNSVDAGATKVFVYVGVC---NCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFR 99 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT~I~V~Id~g---~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGFR 99 (1403)
++..||+|||+||+||+|++|.|.++.. ...|.|.|||.||+.++|..++. .|.++|... .+ ..++|.+
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~-~g~s~k~~~-~~------~~~~G~~ 73 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFR-IGRSSKKSE-KD------RQSIGRF 73 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTT-CHHTHHHHH-HH------GGGGGGG
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhcc-ccCCCCCch-hh------hhcCCCc
Confidence 3578999999999999999999999643 46899999999999999999665 447777521 11 1478999
Q ss_pred cch-h-HHHhhcccEEEEEEecCCCCeEEEEEe
Q 000586 100 GEA-L-ASISDVSLLEIITKAHGRPNGYRKVMK 130 (1403)
Q Consensus 100 GEA-L-aSIa~VS~LeIiSRt~~~~~g~~i~i~ 130 (1403)
|.+ . ++++....++|+|++.+....+.+.+.
T Consensus 74 G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 74 GIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp TSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred ceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 888 4 444444579999999988877776553
No 30
>PRK14083 HSP90 family protein; Provisional
Probab=99.24 E-value=8.7e-11 Score=144.62 Aligned_cols=241 Identities=17% Similarity=0.158 Sum_probs=143.7
Q ss_pred HHHHHhcCCcccCHHHHHHHHHHccccCCCC----------eEEEEE-ecCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 11 VRNTVRSGTVLFDLTRVVEELVFNSVDAGAT----------KVFVYV-GVCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 11 Vi~kIaSGeVI~sp~sVVkELVENSLDAgAT----------~I~V~I-d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
++..|. .....++..+|+|||+||.||+++ .|.|.+ +.+...|.|.|||.||+.+++...+...|.++
T Consensus 12 ll~ll~-~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~ 90 (601)
T PRK14083 12 VIDLLS-RHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSS 90 (601)
T ss_pred HHHHHH-HhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccch
Confidence 445554 566789999999999999999876 788888 66667899999999999999998776665666
Q ss_pred cCCCccccccccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeecc-ccccCCCCeEEEEccccc
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGI-DDERKDVGTTVVSRDLFY 157 (1403)
Q Consensus 80 Ki~s~eDL~~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~-~~~~~~~GTTV~V~dLFy 157 (1403)
|.... +.. ......|..|.|++|.-.|+ +|+|+||..++..++.+.-.++....+.. ......+||+|++.--
T Consensus 91 k~~~~--~~~-~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~-- 165 (601)
T PRK14083 91 KRDEN--LGF-ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPR-- 165 (601)
T ss_pred hhhhh--hcc-cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEec--
Confidence 64321 100 00145799999999999998 59999998765556665544432221221 1234579999999621
Q ss_pred CchhHHHHhhcChHHHHHHHHHHHHHHHhhCC-CeEEEEE--eCCCCceEEEeCCCCC-------HHHHHHHhhCccccc
Q 000586 158 NQPVRRKYMQSSPKKVLHSVKKCVLRIALVHP-KVSFKFI--DMESEDELLCTCSSSS-------PLALLISSFGIEDFS 227 (1403)
Q Consensus 158 NlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P-~IsFsL~--~~~~~k~ll~t~~sss-------~ld~L~~IFG~evas 227 (1403)
|.-+.++ ...+|++++..|+-.-| -|.+.-. ..+....+| +...+. ..+..+.+++. .
T Consensus 166 --~d~~~~~------~~~~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW-~~~~~eit~~~eey~~Fyk~~~~~---~ 233 (601)
T PRK14083 166 --PDAEEWL------ERETVEELAKKYGSLLPVPIRVEGEKGGVNETPPPW-TRDYPDPETRREALLAYGEELLGF---T 233 (601)
T ss_pred --Cchhhhc------cHHHHHHHHHHHhccCCCCcccCCceeeecCCCCCc-cCCccccCccHHHHHHHHHHhcCC---C
Confidence 1112222 23567788888864322 2333210 011112223 322222 33455666662 2
Q ss_pred CcEEEeecCCCeEEEEEEe-CCCc-CCCCcceEEEEEcCccccc
Q 000586 228 FLDEVNANDGALEISGYIS-SPYD-SISVKAFQYVYINSRYVCK 269 (1403)
Q Consensus 228 ~L~eIe~e~~~~kIsGfIS-~P~~-~rssKd~QfIFVNGRpV~~ 269 (1403)
.|..+....++....|.+= .|.. +...+...-+|+|+=.|..
T Consensus 234 Pl~~ih~~~e~~~~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d 277 (601)
T PRK14083 234 PLDVIPLDVPSGGLEGVAYVLPYAVSPAARRKHRVYLKRMLLSE 277 (601)
T ss_pred chheeeecccchhheEEEEecCCCCCccccCceEEEeeeeEeec
Confidence 3333333322223455443 2422 2223445668888888765
No 31
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.23 E-value=2.2e-10 Score=141.98 Aligned_cols=244 Identities=20% Similarity=0.183 Sum_probs=156.8
Q ss_pred CcccCChHHHHHHhcCCcc-----cCHHHHHHHHHHcccc----CCCCeEEEEEecCeeEEEEEeCCCCCCHH-------
Q 000586 3 TINRLPEAVRNTVRSGTVL-----FDLTRVVEELVFNSVD----AGATKVFVYVGVCNCYVKVVDDGSGISRD------- 66 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI-----~sp~sVVkELVENSLD----AgAT~I~V~Id~g~~~I~V~DNG~GIs~e------- 66 (1403)
.|+.|..-=.-+.+-|-+| ..+.++|.|+|+||+| ..|+.|.|.|+.++ .|+|.|||.|||.+
T Consensus 9 ~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg-sitV~DnGrGIPv~~h~~~~~ 87 (637)
T TIGR01058 9 AIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN-SITVQDDGRGIPTGIHQDGNI 87 (637)
T ss_pred HCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC-eEEEEECCCcccCcccCcCCC
Confidence 3666665445566666666 3457899999999999 46999999998543 79999999999964
Q ss_pred -HHHHhh-cccccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCc-eeee-ecccc
Q 000586 67 -GLVLLG-ERHAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGS-KCLY-LGIDD 141 (1403)
Q Consensus 67 -DL~~v~-~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~g-k~~~-~~~~~ 141 (1403)
-++.++ ..| +++|+.+ +-++ .+-|++|+|++.+.++|. ++|.++..+ ..|...+..| .... .....
T Consensus 88 ~~~E~v~t~Lh-aGgkfd~--~~yk----vSGGlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~ 158 (637)
T TIGR01058 88 STVETVFTVLH-AGGKFDQ--GGYK----TAGGLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIG 158 (637)
T ss_pred ccceeEEEEec-ccCcCCC--Cccc----ccCCcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCccccc
Confidence 123333 345 7788864 2333 467999999999999996 888887544 3466677754 4321 11112
Q ss_pred ccCCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCc-eEEEeCCCCCHHHHHHHh
Q 000586 142 ERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLISS 220 (1403)
Q Consensus 142 ~~~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~ld~L~~I 220 (1403)
....+||+|+. .|....|- ...-..+.|.+.++.+|..+|++++.+.+..... ..+... ..+.+.+..+
T Consensus 159 ~~~~~GT~V~F------~PD~~iF~--~~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~--~Gl~~yv~~l 228 (637)
T TIGR01058 159 TTKKTGTLVHF------HPDPTIFK--TTQFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYE--NGLVDFVDYI 228 (637)
T ss_pred CCCCCceEEEE------EeCHHHcC--CCccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcC--cCHHHHHHHh
Confidence 23468999999 48877762 2233456799999999999999999999743221 234433 3444554433
Q ss_pred hCc-ccccCcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCccccc
Q 000586 221 FGI-EDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 269 (1403)
Q Consensus 221 FG~-evas~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~ 269 (1403)
-.. ........++.+.+++.++..+.-. ......++-|||+-+-..
T Consensus 229 ~~~k~~l~~~i~~~~~~~~~~vevAl~~~---~~~~e~~~SFvN~I~T~~ 275 (637)
T TIGR01058 229 NETKETLSQVTYFEGEKNGIEVEVAFQFN---DGDSENILSFANSVKTKE 275 (637)
T ss_pred cCCCCcCCccEEEEEEECCcEEEEEEEEc---CCCCeEEEEeECCccCCC
Confidence 211 1111122233333456666555531 122346889999988764
No 32
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=4.2e-09 Score=127.87 Aligned_cols=318 Identities=17% Similarity=0.185 Sum_probs=187.4
Q ss_pred cccCChHHHHHHhcCCcc------cCHHHHHHHHHHccccC---C-CCeEEEEEecCeeEEEEEeCCCCCCHHH------
Q 000586 4 INRLPEAVRNTVRSGTVL------FDLTRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG------ 67 (1403)
Q Consensus 4 Ik~LpeeVi~kIaSGeVI------~sp~sVVkELVENSLDA---g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD------ 67 (1403)
|+.|..=-.-+.+-|-+| ..+.+.|.|+|+||+|- | |+.|.|.++.+ ..|+|.|||.|||-+-
T Consensus 11 I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d-~sisV~DnGRGIPvdiH~~~~~ 89 (635)
T COG0187 11 IQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHED-GSISVEDNGRGIPVDIHPKEKV 89 (635)
T ss_pred ceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCC-CeEEEEECCCCCccccCCCCCC
Confidence 555553333345555554 45778999999999995 4 99999999843 4699999999999763
Q ss_pred --HHHhhcc-cccCCcCCCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceee-eec-cc-
Q 000586 68 --LVLLGER-HAATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCL-YLG-ID- 140 (1403)
Q Consensus 68 --L~~v~~r-hGaTSKi~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~-~~~-~~- 140 (1403)
++.++.. | +.+|+.. +-++ .+-|..|++.+-..++|. ++|+++..+ .-|+..|..|... ... +.
T Consensus 90 ~~vEvI~T~LH-AGGKFd~--~~Yk----vSGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~ 160 (635)
T COG0187 90 SAVEVIFTVLH-AGGKFDN--DSYK----VSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGS 160 (635)
T ss_pred CceEEEEEeec-cCcccCC--CccE----eecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceeccc
Confidence 4444444 5 8899875 5555 467999999988889985 667766654 4577777766542 111 11
Q ss_pred cccCCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC--ceEEEeCCCCCHHHHHH
Q 000586 141 DERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE--DELLCTCSSSSPLALLI 218 (1403)
Q Consensus 141 ~~~~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P~IsFsL~~~~~~--k~ll~t~~sss~ld~L~ 218 (1403)
.....+||+|+.. |.-..|-. ..-.+..|++.|+.+|..+++|.+.+.+.... ...|.+. ..+.+.+.
T Consensus 161 ~~~~~~GT~V~F~------PD~~iF~~--~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~--~Gl~~yv~ 230 (635)
T COG0187 161 TDTKKTGTKVRFK------PDPEIFGE--TEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYE--GGLKDYVE 230 (635)
T ss_pred CCCCCCccEEEEE------cChHhcCC--cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeecc--cHHHHHHH
Confidence 1234789999984 77665522 44557889999999999999999999875322 1113332 33445554
Q ss_pred HhhCcc-ccc-CcEEEeecCCCeEEEEEEeCCCcCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCC
Q 000586 219 SSFGIE-DFS-FLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSD 287 (1403)
Q Consensus 219 ~IFG~e-vas-~L~eIe~e~~~~kIsGfIS~P~~~rssKd~QfIFVNGRpV~~~---------~I~KlIneL~~sf~sl~ 287 (1403)
.+-... ... .......+..++.++-.+.- .-.....++-|||+-+-..+ .+.++||+.....+.+
T Consensus 231 ~l~~~k~~l~~~~~~~~~~~~~~~vEvA~q~---~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~- 306 (635)
T COG0187 231 YLNKGKTPLHEEIFYFNGEKDGIAVEVALQW---NDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLL- 306 (635)
T ss_pred HHhcCCCccccCceecccCccceEEEEEEEE---ecCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCcC-
Confidence 443321 111 11222223334445444432 12235578899999886643 3445555533221111
Q ss_pred ccccccCcccCCCCCCCCCcEEEEEEEcCCCcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000586 288 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 288 ~~~~~~~~~~~~rs~~~ryP~fVLnI~cPps~VDVNVhPsKtEV~F~de-~~Il~lI~kaI~~fL~~~ 354 (1403)
+ ... ..+ .-..-.-++||++.+|--.++= =+|...--..- ..|-..+.+.+..+|.++
T Consensus 307 k--~~~--l~g--~Diregl~aviSvki~~PqFeg---QTK~KL~n~e~~~~V~~~v~~~~~~~l~en 365 (635)
T COG0187 307 K--EGD--LTG--DDIREGLTAVISVKIPDPQFEG---QTKEKLGNSEVRSIVEKLVSEAFSLFLEEN 365 (635)
T ss_pred c--ccC--CCH--HHHhhccEEEEEEECCCCCcCc---ccccccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 0 000 000 0112346899999998532211 12322111111 234455566666666655
No 33
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.8e-08 Score=121.49 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=136.4
Q ss_pred CcccCHHHHHHHHHHccccCC------------------CCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 19 TVLFDLTRVVEELVFNSVDAG------------------ATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 19 eVI~sp~sVVkELVENSLDAg------------------AT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
-+-.+..--++|||.||-||- .-.|.|.+|.....++|+|||.||+++|+.......+-+++
T Consensus 23 SlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 23 SLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred hccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccH
Confidence 345677889999999999992 23566677777778999999999999998753322211111
Q ss_pred CCCccccccc-cCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeeccccccCC-CCeEEEEccccc
Q 000586 81 LGHLADMDDA-TGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKD-VGTTVVSRDLFY 157 (1403)
Q Consensus 81 i~s~eDL~~~-~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~~~-~GTTV~V~dLFy 157 (1403)
-.=++.+... ....-.|..|.|++|---|| +|+|+||..+.+.++.+.-.|.....+... ...+ +||+|+++ |
T Consensus 103 ~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~-~~~~~~GT~I~L~-L-- 178 (623)
T COG0326 103 KEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDI-DKEPRRGTEITLH-L-- 178 (623)
T ss_pred HHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeec-cCCCCCCcEEEEE-E--
Confidence 0001111110 01145799999999999998 699999999988888666655432111111 1223 69999996 1
Q ss_pred CchhHHHHhhcChHHHHHHHHHHHHHHHhhCC-CeEEEEEeCC-----------CCceEEEeCCCCCH-HHHHHHhhC--
Q 000586 158 NQPVRRKYMQSSPKKVLHSVKKCVLRIALVHP-KVSFKFIDME-----------SEDELLCTCSSSSP-LALLISSFG-- 222 (1403)
Q Consensus 158 NlPVRRK~L~ss~kke~~~Ik~lL~~yALi~P-~IsFsL~~~~-----------~~k~ll~t~~sss~-ld~L~~IFG-- 222 (1403)
.|.=..|+ +--+|+++|..|+-.-+ -|.+...... +...+| +.+.+.+ .+.....|-
T Consensus 179 -k~~e~efl------~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~alW-~r~ksei~~eeY~eFYk~~ 250 (623)
T COG0326 179 -KEEEDEFL------EEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKALW-TRNKSEITDEEYKEFYKHL 250 (623)
T ss_pred -CCchHHHh------hhhHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccCcc-cCChhhCChHHHHHHHHHh
Confidence 11111122 23468899999975433 2555442210 111222 2222111 122222221
Q ss_pred -cccccCcEEEeecC-CCeEEEEEEeCCC------cCCCCcceEEEEEcCcccccc
Q 000586 223 -IEDFSFLDEVNAND-GALEISGYISSPY------DSISVKAFQYVYINSRYVCKG 270 (1403)
Q Consensus 223 -~evas~L~eIe~e~-~~~kIsGfIS~P~------~~rssKd~QfIFVNGRpV~~~ 270 (1403)
......+..+..+. +.+...+++=-|. ..+..|..+-+|||+-.|.+.
T Consensus 251 ~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd 306 (623)
T COG0326 251 AHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDD 306 (623)
T ss_pred hcccCCCeEEEecccccceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCC
Confidence 12223345555443 3366666554442 123446668899999988753
No 34
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=98.82 E-value=2.6e-08 Score=125.73 Aligned_cols=246 Identities=20% Similarity=0.201 Sum_probs=151.1
Q ss_pred cccCChHHHHHHhcCCcc-----cCHHHHHHHHHHccccC---C-CCeEEEEEecCeeEEEEEeCCCCCCHHH-------
Q 000586 4 INRLPEAVRNTVRSGTVL-----FDLTRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG------- 67 (1403)
Q Consensus 4 Ik~LpeeVi~kIaSGeVI-----~sp~sVVkELVENSLDA---g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD------- 67 (1403)
|+.|..--.-+.+-|-+| ..+.++|.|+|+||+|- | |+.|.|.|+.+ ..|+|.|||.|||-+-
T Consensus 105 I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D-gsItV~DnGRGIPvd~h~k~g~s 183 (903)
T PTZ00109 105 IVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKD-GSVEISDNGRGIPCDVSEKTGKS 183 (903)
T ss_pred CeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCC-CeEEEEeCCccccccccccCCCc
Confidence 444443333344445454 34678999999999993 4 89999999764 3799999999999742
Q ss_pred -HHHhhc-ccccCCcCCCcc--------------------------------------ccccccCCcccCcccchhHHHh
Q 000586 68 -LVLLGE-RHAATSKLGHLA--------------------------------------DMDDATGIGTFGFRGEALASIS 107 (1403)
Q Consensus 68 -L~~v~~-rhGaTSKi~s~e--------------------------------------DL~~~~gI~TlGFRGEALaSIa 107 (1403)
++.++. -| +++|+..-. +.+. .+-|..|+|++...
T Consensus 184 ~~E~VlT~Lh-AGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~Yk----vSGGLHGVG~SVVN 258 (903)
T PTZ00109 184 GLETVLTVLH-SGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYE----YSSGLHGVGLSVVN 258 (903)
T ss_pred ceeEEEEEec-cCccccCcccccccccccccccccccccccccccccccccccccccCCcce----ecCcCCCcceeeee
Confidence 334433 45 778886420 0112 35699999999999
Q ss_pred hccc-EEEEEEecCCCCeEEEEEeCceeee-ecccccc-CCCCeEEEEcccccCchh-HHHHhhcChH------------
Q 000586 108 DVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDER-KDVGTTVVSRDLFYNQPV-RRKYMQSSPK------------ 171 (1403)
Q Consensus 108 ~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~-~~~~~~~-~~~GTTV~V~dLFyNlPV-RRK~L~ss~k------------ 171 (1403)
++|. ++|.++..+ ..|...|..|.... ..+.... ..+||+|+.. |. .+-| .....
T Consensus 259 ALS~~l~VeV~RdG--K~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~------PD~~~IF-~~~~~~~~~~~~~~~~~ 329 (903)
T PTZ00109 259 ALSSFLKVDVFKGG--KIYSIELSKGKVTKPLSVFSCPLKKRGTTIHFL------PDYKHIF-KTHHQHTETEEEEGCKN 329 (903)
T ss_pred eccCeEEEEEEECC--EEEEEEeCCCcccCCccccCCcCCCCceEEEEE------eCcchhc-Ccccccccccccccccc
Confidence 9985 777776654 36888888776431 1111122 4589999994 66 4433 21111
Q ss_pred -HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCc-------eEEEeCCCCCHHHHHHHhhCcc-cc-cC--cEEEeecCCCe
Q 000586 172 -KVLHSVKKCVLRIALVHPKVSFKFIDMESED-------ELLCTCSSSSPLALLISSFGIE-DF-SF--LDEVNANDGAL 239 (1403)
Q Consensus 172 -ke~~~Ik~lL~~yALi~P~IsFsL~~~~~~k-------~ll~t~~sss~ld~L~~IFG~e-va-s~--L~eIe~e~~~~ 239 (1403)
-.++.|++.++.+|..+|+++|.|.+..... ..+... ..+.+.+..+-... .. .. .+.+..+.+++
T Consensus 330 ~F~~d~L~~RLrElAfLNpGL~I~L~DeR~~~~~~~~~~e~f~~e--gGi~dfv~~ln~~k~~l~~~~~~I~~~g~~~~i 407 (903)
T PTZ00109 330 GFNLDLIKNRIHELSYLNPGLTFYLVDERIANENNFYPYETIKHE--GGTREFLEELIKDKTPLYKDINIISIRGVIKNV 407 (903)
T ss_pred ccCHHHHHHHHHHHhccCCCcEEEEEecCccccCCcceEEEEEec--CCHHHHHHHhcCCCCccCCCCceEEEEeeecCe
Confidence 2467899999999999999999999753211 223333 34555554443211 11 11 22233333455
Q ss_pred EEEEEEeCCCcCCCCcceEEEEEcCcccc
Q 000586 240 EISGYISSPYDSISVKAFQYVYINSRYVC 268 (1403)
Q Consensus 240 kIsGfIS~P~~~rssKd~QfIFVNGRpV~ 268 (1403)
.|+..+.-. .-.....++-|||+-+-.
T Consensus 408 ~VEVAlq~s--~~~y~e~i~SFVNnI~T~ 434 (903)
T PTZ00109 408 NVEVSLSWS--LESYTALIKSFANNVSTT 434 (903)
T ss_pred EEEEEEEec--CCCCceEEEEEECCccCC
Confidence 566555431 112245678999998766
No 35
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.82 E-value=5e-09 Score=130.87 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=99.9
Q ss_pred CCcccCHHHHHHHHHHccccCCCC----------------e--EEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 18 GTVLFDLTRVVEELVFNSVDAGAT----------------K--VFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 18 GeVI~sp~sVVkELVENSLDAgAT----------------~--I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
.-.-.++...|+|||.||.||..+ . |.|..+.....+.|.|||.||+.+|+.......+.++
T Consensus 20 ~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SG 99 (701)
T PTZ00272 20 NTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSG 99 (701)
T ss_pred hcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhcc
Confidence 445577788999999999999532 3 4444455556899999999999999887655442221
Q ss_pred cCCCc-cccccccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeeccc-cccCCCCeEEEEcccc
Q 000586 80 KLGHL-ADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGID-DERKDVGTTVVSRDLF 156 (1403)
Q Consensus 80 Ki~s~-eDL~~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~-~~~~~~GTTV~V~dLF 156 (1403)
+ ..| +.+.........|..|.|++|.-.|+ +|+|+||..+. .+|.+..+++....+... .....+||+|++. |
T Consensus 100 t-~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~-L- 175 (701)
T PTZ00272 100 T-KAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLH-L- 175 (701)
T ss_pred h-HHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEE-E-
Confidence 1 001 00100001146788999999998887 59999998654 578777766432222211 1234799999995 1
Q ss_pred cCchhHHHHhhcChHHHHHHHHHHHHHHHhh
Q 000586 157 YNQPVRRKYMQSSPKKVLHSVKKCVLRIALV 187 (1403)
Q Consensus 157 yNlPVRRK~L~ss~kke~~~Ik~lL~~yALi 187 (1403)
-|.-..|+ .-.+|+.+|..|+-.
T Consensus 176 --k~d~~ef~------~~~~i~~li~kYs~f 198 (701)
T PTZ00272 176 --KEDQMEYL------EPRRLKELIKKHSEF 198 (701)
T ss_pred --CCchHHhc------cHHHHHHHHHHhccc
Confidence 01111222 235688899999753
No 36
>PTZ00130 heat shock protein 90; Provisional
Probab=98.81 E-value=9.8e-09 Score=128.87 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCcccCHHHHHHHHHHccccCCC----------------C--eEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 18 GTVLFDLTRVVEELVFNSVDAGA----------------T--KVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 18 GeVI~sp~sVVkELVENSLDAgA----------------T--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+.+..++...|+|||.||.||.+ + .|.|..+.....|+|.|||.||+.+++..-.... +.|
T Consensus 83 ~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTI-A~S 161 (814)
T PTZ00130 83 NSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTI-AKS 161 (814)
T ss_pred hccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhh-ccc
Confidence 55778899999999999999975 2 4455545556689999999999999987654444 333
Q ss_pred cCCCc-ccccc-ccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeeccc--cccCCCCeEEEEcc
Q 000586 80 KLGHL-ADMDD-ATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGID--DERKDVGTTVVSRD 154 (1403)
Q Consensus 80 Ki~s~-eDL~~-~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~--~~~~~~GTTV~V~d 154 (1403)
--..| +.+.. .....-.|..|+|++|.-.|+ +|+|+||..+ ..+|.+.-.++....+... .....+||+|+++
T Consensus 162 gt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~Lh- 239 (814)
T PTZ00130 162 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLH- 239 (814)
T ss_pred ccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEE-
Confidence 11111 11110 001135799999999999998 5999999866 4567766555432212211 1234799999996
Q ss_pred cccCchhHHHHhhcChHHHHHHHHHHHHHHHhh
Q 000586 155 LFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALV 187 (1403)
Q Consensus 155 LFyNlPVRRK~L~ss~kke~~~Ik~lL~~yALi 187 (1403)
|= +.=..|+ .-.+|+.+|..|+-.
T Consensus 240 Lk---ed~~efl------~~~~ik~likkYS~f 263 (814)
T PTZ00130 240 LK---EDATNLM------NDKKLVDLISKYSQF 263 (814)
T ss_pred EC---Cchhhhc------cHHHHHHHHHHhhcc
Confidence 20 1111222 235688899999754
No 37
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=98.74 E-value=1.8e-08 Score=124.57 Aligned_cols=160 Identities=24% Similarity=0.246 Sum_probs=113.7
Q ss_pred ccCHHHHHHHHHHccccC------C-CCeEEEEEecCeeEEEEEeCCCCCCHHH--------H---HHh-hcccccCCcC
Q 000586 21 LFDLTRVVEELVFNSVDA------G-ATKVFVYVGVCNCYVKVVDDGSGISRDG--------L---VLL-GERHAATSKL 81 (1403)
Q Consensus 21 I~sp~sVVkELVENSLDA------g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L---~~v-~~rhGaTSKi 81 (1403)
+.-+.+++.|+|.||+|- | |+.|.|.|+ ...|+|.|||.|||-+- + +.+ +.-| +.+|+
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh-aGgkF 119 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK-AGSNF 119 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec-ccccc
Confidence 456678999999999993 4 899999999 44799999999998642 1 222 3445 77888
Q ss_pred CCccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceeeeeccccccCCCCeEEEEcccccCch
Q 000586 82 GHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 160 (1403)
Q Consensus 82 ~s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~~~~GTTV~V~dLFyNlP 160 (1403)
. |-++ .+-|..|.++....++|. ++|+++ ++ ...|...+..|.............+||+|+. +|
T Consensus 120 d---~~yk----vSGGlhGVG~svvNaLS~~~~V~v~-~~-~~~~~q~f~~G~~~~~~~~~~~~~~GT~V~F------~P 184 (602)
T PHA02569 120 D---DTNR----VTGGMNGVGSSLTNFFSVLFIGETC-DG-KNEVTVNCSNGAENISWSTKPGKGKGTSVTF------IP 184 (602)
T ss_pred C---Ccce----eeCCcCCccceeeeccchhhheEEE-cC-CEEEEEEecCCcccCCcccCCCCCCccEEEE------EE
Confidence 3 4454 467999999998899985 777653 33 3457778877753211011122468999999 48
Q ss_pred hHHHHhhcCh-HHHHHHHHHHHHHHHhhCCCeEEEEEeC
Q 000586 161 VRRKYMQSSP-KKVLHSVKKCVLRIALVHPKVSFKFIDM 198 (1403)
Q Consensus 161 VRRK~L~ss~-kke~~~Ik~lL~~yALi~P~IsFsL~~~ 198 (1403)
.-..|-.... ...++.|.+.++.+|..+|++++.|.+.
T Consensus 185 D~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 185 DFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred CHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 8777722111 1236789999999999999999999863
No 38
>PLN03128 DNA topoisomerase 2; Provisional
Probab=98.66 E-value=3.4e-07 Score=119.45 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=115.4
Q ss_pred CcccCHHHHHHHHHHccccCC-----CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcccccCCcCCCcc
Q 000586 19 TVLFDLTRVVEELVFNSVDAG-----ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGERHAATSKLGHLA 85 (1403)
Q Consensus 19 eVI~sp~sVVkELVENSLDAg-----AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~v~~rhGaTSKi~s~e 85 (1403)
.++..+..++.|+|.||+|-. |+.|.|.|+.+...|+|.|||.|||-+- .+.++....++||+.+
T Consensus 48 ~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd-- 125 (1135)
T PLN03128 48 TYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDD-- 125 (1135)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCC--
Confidence 455778899999999999943 5899999997656899999999999651 2334444327888864
Q ss_pred ccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCceeeee--ccccc-cCCCCeEEEEcccccCchh
Q 000586 86 DMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLYL--GIDDE-RKDVGTTVVSRDLFYNQPV 161 (1403)
Q Consensus 86 DL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk~~~~--~~~~~-~~~~GTTV~V~dLFyNlPV 161 (1403)
+-++ .+-|..|.|.....++|. ++|.++......-|...+..|..... .+... ...+||+|+.. |.
T Consensus 126 ~~yk----vSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~------PD 195 (1135)
T PLN03128 126 NEKK----TTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITFK------PD 195 (1135)
T ss_pred ccce----eeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEEE------EC
Confidence 2233 467999999888888885 88888743333567788877643211 01111 13589999994 77
Q ss_pred HHHHhhcCh-HHHHHHHHHHHHHHH-hhCCCeEEEEEe
Q 000586 162 RRKYMQSSP-KKVLHSVKKCVLRIA-LVHPKVSFKFID 197 (1403)
Q Consensus 162 RRK~L~ss~-kke~~~Ik~lL~~yA-Li~P~IsFsL~~ 197 (1403)
-..|-.... ...+..+.+.++.+| ..+|+|++.|.+
T Consensus 196 ~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnd 233 (1135)
T PLN03128 196 LAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNG 233 (1135)
T ss_pred HHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 666621112 233456777778877 888999999985
No 39
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=98.66 E-value=7.8e-08 Score=126.48 Aligned_cols=167 Identities=17% Similarity=0.095 Sum_probs=118.2
Q ss_pred CcccCHHHHHHHHHHccccC-------C-CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcccccCCcCC
Q 000586 19 TVLFDLTRVVEELVFNSVDA-------G-ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGERHAATSKLG 82 (1403)
Q Consensus 19 eVI~sp~sVVkELVENSLDA-------g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~v~~rhGaTSKi~ 82 (1403)
.++..+..++.|+|.||+|- | ++.|.|.|+.+...|+|.|||.|||-+- .++++....++||+.
T Consensus 53 ~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 53 TYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred cccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 35578899999999999994 3 7899999997756799999999999641 234444432778886
Q ss_pred CccccccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeCce--eeeeccccccC-CCCeEEEEcccccC
Q 000586 83 HLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSK--CLYLGIDDERK-DVGTTVVSRDLFYN 158 (1403)
Q Consensus 83 s~eDL~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~gk--~~~~~~~~~~~-~~GTTV~V~dLFyN 158 (1403)
+ +-++ .+-|..|.|.....++|. ++|+++.......|...|..|. ...-.+..... .+||+|+..
T Consensus 133 d--~~yK----vSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~----- 201 (1388)
T PTZ00108 133 D--TEKR----VTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFY----- 201 (1388)
T ss_pred C--Ccee----eecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEE-----
Confidence 4 2233 467999999888888885 8888877644456888887662 21111112112 689999994
Q ss_pred chhHHHHhhcCh-HHHHHHHHHHHHHHHhhCCCeEEEEEe
Q 000586 159 QPVRRKYMQSSP-KKVLHSVKKCVLRIALVHPKVSFKFID 197 (1403)
Q Consensus 159 lPVRRK~L~ss~-kke~~~Ik~lL~~yALi~P~IsFsL~~ 197 (1403)
|.-.+|=.... ......|.+.+..+|..+|+|++.|.+
T Consensus 202 -PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnd 240 (1388)
T PTZ00108 202 -PDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNG 240 (1388)
T ss_pred -eCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 88777721111 223344889999999999999999975
No 40
>PLN03237 DNA topoisomerase 2; Provisional
Probab=98.51 E-value=4.9e-07 Score=118.93 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=112.1
Q ss_pred cccCHHHHHHHHHHccccCC-----CCeEEEEEecCeeEEEEEeCCCCCCHH--------HHHHhhcccccCCcCCCccc
Q 000586 20 VLFDLTRVVEELVFNSVDAG-----ATKVFVYVGVCNCYVKVVDDGSGISRD--------GLVLLGERHAATSKLGHLAD 86 (1403)
Q Consensus 20 VI~sp~sVVkELVENSLDAg-----AT~I~V~Id~g~~~I~V~DNG~GIs~e--------DL~~v~~rhGaTSKi~s~eD 86 (1403)
++..+..++-|+|.||+|-. ++.|.|.|+.....|+|.|||.|||-+ -.++++....++||+.+ +
T Consensus 74 ~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd--~ 151 (1465)
T PLN03237 74 YVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDD--N 151 (1465)
T ss_pred ccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCC--C
Confidence 46778899999999999953 689999999666679999999999965 12344444327788864 2
Q ss_pred cccccCCcccCcccchhHHHhhccc-EEEEEEecCCCCeEEEEEeC--ceeeeeccccc-cCCCCeEEEEcccccCchhH
Q 000586 87 MDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKG--SKCLYLGIDDE-RKDVGTTVVSRDLFYNQPVR 162 (1403)
Q Consensus 87 L~~~~gI~TlGFRGEALaSIa~VS~-LeIiSRt~~~~~g~~i~i~~--gk~~~~~~~~~-~~~~GTTV~V~dLFyNlPVR 162 (1403)
-++ .+-|..|.|......+|. ++|.++......-|...|.. |....-.+... ...+||+|+. +|.-
T Consensus 152 ~yK----vSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF------~PD~ 221 (1465)
T PLN03237 152 EKK----TTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTF------KPDL 221 (1465)
T ss_pred cce----eeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEE------EECH
Confidence 233 467999999888888885 77777622222457777765 44321111111 1368999999 4777
Q ss_pred HHHhhcCh-HHHHHHHHHHHHHHH-hhCCCeEEEEEeC
Q 000586 163 RKYMQSSP-KKVLHSVKKCVLRIA-LVHPKVSFKFIDM 198 (1403)
Q Consensus 163 RK~L~ss~-kke~~~Ik~lL~~yA-Li~P~IsFsL~~~ 198 (1403)
..|=.... ...+..+.+.++.+| ..+|+|+|.|.+.
T Consensus 222 eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 222 AKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred HHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEec
Confidence 77721112 223333446666667 7889999999863
No 41
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.32 E-value=1.5e-06 Score=83.68 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHccccCCCC--eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccC
Q 000586 22 FDLTRVVEELVFNSVDAGAT--KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFG 97 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAgAT--~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlG 97 (1403)
..+..++.||++||+++... .|.|.+.. +...|.|.|||.||++++++.++.++ .+.+.. . ...+
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~-~~~~~~----~------~~~~ 72 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPF-FTSDKS----E------TSIS 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTT-SHSSSS----S------GGSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhc-cccccc----c------cccC
Confidence 45788999999999999876 88888854 56799999999999999999999998 766541 1 1233
Q ss_pred cccchhHHHhhcc
Q 000586 98 FRGEALASISDVS 110 (1403)
Q Consensus 98 FRGEALaSIa~VS 110 (1403)
-.|.+|+....++
T Consensus 73 g~GlGL~~~~~~~ 85 (111)
T PF02518_consen 73 GHGLGLYIVKQIA 85 (111)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 3677887666654
No 42
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.82 E-value=4.1e-05 Score=89.32 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHHHHHHccccCCCC------eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcc
Q 000586 24 LTRVVEELVFNSVDAGAT------KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGT 95 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT------~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~T 95 (1403)
+.+|+.+||.||+++.+. .|.|.+. .+...|.|.|||.||+++.+..+|.++ +|+|-..
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f-~~~~~~~------------ 454 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPF-FTTKGGS------------ 454 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCC-cccCCCC------------
Confidence 688999999999998533 3666553 345689999999999999999999999 8887432
Q ss_pred cCcccchhHHHhhc
Q 000586 96 FGFRGEALASISDV 109 (1403)
Q Consensus 96 lGFRGEALaSIa~V 109 (1403)
.+-.|.||+-...+
T Consensus 455 ~~G~GlGL~i~~~i 468 (494)
T TIGR02938 455 RKHIGMGLSVAQEI 468 (494)
T ss_pred CCCCcccHHHHHHH
Confidence 22246777755444
No 43
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=8.2e-05 Score=90.77 Aligned_cols=166 Identities=18% Similarity=0.155 Sum_probs=106.9
Q ss_pred CcccCChHHHHHHhcCCcccCHHHHHHHHHHccccCC--------------CCeEEEEE--ecCeeEEEEEeCCCCCCHH
Q 000586 3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAG--------------ATKVFVYV--GVCNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 3 ~Ik~LpeeVi~kIaSGeVI~sp~sVVkELVENSLDAg--------------AT~I~V~I--d~g~~~I~V~DNG~GIs~e 66 (1403)
-|+.|-+-+++.+-|+ -.--++|||-||-||- .....|+| +.....+++.|.|.||+.+
T Consensus 42 E~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~ 116 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKE 116 (656)
T ss_pred hHHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHH
Confidence 3566777777777776 4457999999999992 12344444 4555689999999999999
Q ss_pred HHHHhhccc-ccCCcCCCccccc-cccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeecccccc
Q 000586 67 GLVLLGERH-AATSKLGHLADMD-DATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGIDDER 143 (1403)
Q Consensus 67 DL~~v~~rh-GaTSKi~s~eDL~-~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~~~ 143 (1403)
||..-...- -.+||.- .+.+. ....+.-.|..|.|.+|---|+ +|.|+||..++. ++.+...++..-.+. ....
T Consensus 117 dLvnnLGTIAkSGtK~F-mealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~-~~~~ 193 (656)
T KOG0019|consen 117 DLVNNLGTIAKSGSKAF-LEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIA-EASG 193 (656)
T ss_pred HHHhhhhhhhhcccHHH-HHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEe-eccC
Confidence 997643322 0223311 11221 1111245699999999998888 699999987765 777776655432221 1223
Q ss_pred CCCCeEEEEcccccCchhHHHHhhcChHHHHHHHHHHHHHHHh
Q 000586 144 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIAL 186 (1403)
Q Consensus 144 ~~~GTTV~V~dLFyNlPVRRK~L~ss~kke~~~Ik~lL~~yAL 186 (1403)
..+||.|++. .|.-.. ...+-.+|++++..|+.
T Consensus 194 ~~rGTki~l~---------lKe~~~-ey~ee~rikeiVKK~S~ 226 (656)
T KOG0019|consen 194 LRTGTKIVIH---------LKEGDC-EFLEEKRIKEVVKKYSN 226 (656)
T ss_pred ccccceEEee---------ehhhhh-hhccHhHHHHHHhhccc
Confidence 7899999985 122111 23345778899988765
No 44
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.65 E-value=0.00016 Score=85.53 Aligned_cols=57 Identities=26% Similarity=0.358 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+.+|+..||.||+++.. ..|.|.+. .+...|.|.|||.||++++++.++.++ ++.+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~ 377 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERF-YRVD 377 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCc-cccc
Confidence 367899999999999864 35777663 345689999999999999999999998 7654
No 45
>PRK10604 sensor protein RstB; Provisional
Probab=97.61 E-value=0.00019 Score=85.40 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=48.4
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+..|+..||.||+..+...|.|.+. .+...|.|.|||.||++++++.++.++ ++.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f-~r~ 376 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPF-VRL 376 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCC-ccC
Confidence 6789999999999999888888874 455789999999999999999999998 654
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.61 E-value=0.00015 Score=87.82 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHccccC------CCCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCc
Q 000586 23 DLTRVVEELVFNSVDA------GATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIG 94 (1403)
Q Consensus 23 sp~sVVkELVENSLDA------gAT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~ 94 (1403)
.+.+++.+||+||+++ +.+.|.|.+.. +...|.|.|||.||++++++.+|+++ +|+|-.
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~-~~tk~~------------ 498 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQG-VSTRAD------------ 498 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCC-CCCCCC------------
Confidence 3667899999999998 45678887753 34689999999999999999999997 876532
Q ss_pred ccCcccchhHHHhhc
Q 000586 95 TFGFRGEALASISDV 109 (1403)
Q Consensus 95 TlGFRGEALaSIa~V 109 (1403)
..|-+|.||+-+..+
T Consensus 499 ~~~g~GlGL~ivk~i 513 (545)
T PRK15053 499 EPGEHGIGLYLIASY 513 (545)
T ss_pred CCCCceeCHHHHHHH
Confidence 234467888766555
No 47
>PRK10364 sensor protein ZraS; Provisional
Probab=97.54 E-value=0.00023 Score=84.63 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHccccCC--CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAG--ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAg--AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+.+++..||+||+++. ...|.|.+. .+...|.|.|||.||++++++.++.++ +++|
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~~k 408 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPY-FTTK 408 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCcc-ccCC
Confidence 46789999999999984 457888774 345689999999999999999999998 7665
No 48
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.54 E-value=0.0002 Score=84.09 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=46.2
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe---cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVG---VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id---~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+|+..||.||+.+.. ..|.|.+. .+...|.|.|||.||+++++..+|.++ ++.+
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf-~~~~ 333 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDR-VRLP 333 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCc-eeCC
Confidence 67899999999999875 46777652 234689999999999999999999998 6654
No 49
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.51 E-value=0.00024 Score=83.76 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=56.0
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCcc
Q 000586 24 LTRVVEELVFNSVDAGAT--KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFR 99 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT--~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGFR 99 (1403)
+.+++.+||.||+.+... .|.|.+. .+...|.|.|||.||++++++.++.++ ++.+-..- ...|-.
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~-~~~~~~~~---------~~~~g~ 422 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERF-YRTEGSRN---------RASGGS 422 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCc-ccCCCCcC---------CCCCCC
Confidence 568999999999997543 5777664 445689999999999999999999998 76643210 123345
Q ss_pred cchhHHHhhc
Q 000586 100 GEALASISDV 109 (1403)
Q Consensus 100 GEALaSIa~V 109 (1403)
|.+|+-+..+
T Consensus 423 GlGL~iv~~i 432 (466)
T PRK10549 423 GLGLAICLNI 432 (466)
T ss_pred cHHHHHHHHH
Confidence 7888755554
No 50
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.49 E-value=0.00018 Score=87.55 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=65.2
Q ss_pred HHhcCCcccCHHHHHHHHHHccccCCC-----CeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccc
Q 000586 14 TVRSGTVLFDLTRVVEELVFNSVDAGA-----TKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLAD 86 (1403)
Q Consensus 14 kIaSGeVI~sp~sVVkELVENSLDAgA-----T~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eD 86 (1403)
...++...+.+..+|--||+||+||-+ +.|.+.+.. +...|.|.|||+||+++..+.++++- .++|-
T Consensus 418 ~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G-~Stk~----- 491 (537)
T COG3290 418 QLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKG-VSTKN----- 491 (537)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcC-ccccC-----
Confidence 444566778899999999999999977 789999843 44689999999999999999999985 88874
Q ss_pred cccccCCcccCcccchhHHHhhc
Q 000586 87 MDDATGIGTFGFRGEALASISDV 109 (1403)
Q Consensus 87 L~~~~gI~TlGFRGEALaSIa~V 109 (1403)
-|-||.+|+-+.+.
T Consensus 492 ---------~~~rGiGL~Lvkq~ 505 (537)
T COG3290 492 ---------TGGRGIGLYLVKQL 505 (537)
T ss_pred ---------CCCCchhHHHHHHH
Confidence 13467788766544
No 51
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.41 E-value=0.00016 Score=88.64 Aligned_cols=59 Identities=29% Similarity=0.323 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHccccCCCC----eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCcC
Q 000586 22 FDLTRVVEELVFNSVDAGAT----KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSKL 81 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAgAT----~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi 81 (1403)
.++.+|+-.||.|||||=+. .|.|.+. .+...|.|.|||.||+++-+..+|+++ .|+|-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF-~TtK~ 560 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPF-FTTKP 560 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCc-cccCc
Confidence 47899999999999999543 6888773 456789999999999999999999999 99984
No 52
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.33 E-value=0.00077 Score=79.20 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+..++.+||+||+..+.+.|.|.+. .+...|.|.|||.||+++++..++.++ ++.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~~ 410 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPF-YRV 410 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCC-ccC
Confidence 4678999999999999998888774 344689999999999999999999998 543
No 53
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.32 E-value=0.0011 Score=59.83 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=42.6
Q ss_pred HHHHHHHHHHccccCCC---CeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 24 LTRVVEELVFNSVDAGA---TKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA---T~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
+..++.|||+||+++++ ..|.|.+.. +...|.|.|+|.||++..+...+.++
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~ 57 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERF 57 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhh
Confidence 35789999999999987 567777753 34689999999999999998877654
No 54
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.32 E-value=0.00099 Score=77.89 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=56.9
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCcc
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFR 99 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGFR 99 (1403)
+..++.+||.||++++. ..|.|.+.. +...|.|.|||.||+++.+..++.++ ++++-.... ..+-+
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~-~~~~~~~~~---------~~~g~ 423 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRF-YRVDPARSN---------SGEGT 423 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcccc-ccCCcccCC---------CCCCc
Confidence 56789999999999873 468887743 34689999999999999999999998 887654211 11225
Q ss_pred cchhHHHhhc
Q 000586 100 GEALASISDV 109 (1403)
Q Consensus 100 GEALaSIa~V 109 (1403)
|.||+-+..+
T Consensus 424 GlGL~i~~~~ 433 (457)
T TIGR01386 424 GLGLAIVRSI 433 (457)
T ss_pred cccHHHHHHH
Confidence 6777766554
No 55
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.26 E-value=0.00078 Score=78.98 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCc
Q 000586 23 DLTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGF 98 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGF 98 (1403)
.+..++.+||+||+.++. +.|.|.+. .+...|.|.|||.||+++++..++.++ .+.+... ...+-
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~-~~~~~~~----------~~~~~ 436 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERF-YSLPRPA----------NGRKS 436 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHH-ccCCCCC----------CCCCC
Confidence 377899999999999753 57888775 345689999999999999999999998 6654321 11233
Q ss_pred ccchhHHHhhc
Q 000586 99 RGEALASISDV 109 (1403)
Q Consensus 99 RGEALaSIa~V 109 (1403)
.|.||+.+..+
T Consensus 437 ~GlGL~i~~~~ 447 (475)
T PRK11100 437 TGLGLAFVREV 447 (475)
T ss_pred cchhHHHHHHH
Confidence 46777765544
No 56
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.24 E-value=0.00093 Score=78.32 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 24 LTRVVEELVFNSVDAGATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
+..++.+||+||+..+...|.|.+.. +...|.|.|||.||++++++.+++++
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 46789999999999999999998743 44689999999999999999999987
No 57
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.15 E-value=0.0012 Score=80.45 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccC
Q 000586 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAAT 78 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaT 78 (1403)
+..|+..||+||++++...|.|.+. .+...|.|.|||.||++++++.++.++ .+
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f-~~ 434 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRG-QR 434 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc-cc
Confidence 5779999999999998888888774 345689999999999999999999987 54
No 58
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0014 Score=78.32 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=90.8
Q ss_pred HHHHHHHHHccccCC---------------CC---eEEEEEecCeeEEEEEeCCCCCCHHHHHH-hhc--ccccCC----
Q 000586 25 TRVVEELVFNSVDAG---------------AT---KVFVYVGVCNCYVKVVDDGSGISRDGLVL-LGE--RHAATS---- 79 (1403)
Q Consensus 25 ~sVVkELVENSLDAg---------------AT---~I~V~Id~g~~~I~V~DNG~GIs~eDL~~-v~~--rhGaTS---- 79 (1403)
..-++|||.||-||= .+ .|.|..|.....+.|.|.|.||+.+||.. +|. +. .||
T Consensus 97 eIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkS-GTs~Fl~ 175 (785)
T KOG0020|consen 97 EIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKS-GTSEFLE 175 (785)
T ss_pred HHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcc-cHHHHHH
Confidence 357899999999982 11 45555566667899999999999999864 322 22 333
Q ss_pred cCCCccccccccCCcccCcccchhHHHhhcc-cEEEEEEecCCCCeEEEEEeCceeeeecccc--ccCCCCeEEEEcccc
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGIDD--ERKDVGTTVVSRDLF 156 (1403)
Q Consensus 80 Ki~s~eDL~~~~gI~TlGFRGEALaSIa~VS-~LeIiSRt~~~~~g~~i~i~~gk~~~~~~~~--~~~~~GTTV~V~dLF 156 (1403)
|..+..++.... ..-.|..|+|.+|.--|+ +|.|+|++.++ ..|.+.-+..... +..++ ..-.+||+|++.
T Consensus 176 Km~~~~~~~~~~-~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD-~QyiWESdan~Fs-vseDprg~tL~RGt~ItL~--- 249 (785)
T KOG0020|consen 176 KMQDSGDSEGLM-NDLIGQFGVGFYSAFLVADRVVVTSKHNDD-SQYIWESDANSFS-VSEDPRGNTLGRGTEITLY--- 249 (785)
T ss_pred HhhccccchhhH-HHHHHhcchhhhhhhhhcceEEEEeccCCc-cceeeeccCccee-eecCCCCCcccCccEEEEE---
Confidence 443333332211 134588899999988888 58888887654 3343333332211 11111 224789999984
Q ss_pred cCchhHHHHhhcC--hHHHHHHHHHHHHHHHh
Q 000586 157 YNQPVRRKYMQSS--PKKVLHSVKKCVLRIAL 186 (1403)
Q Consensus 157 yNlPVRRK~L~ss--~kke~~~Ik~lL~~yAL 186 (1403)
|+.. ..-+.+.+++++..|+-
T Consensus 250 ---------LkeEA~dyLE~dtlkeLvkkYSq 272 (785)
T KOG0020|consen 250 ---------LKEEAGDYLEEDTLKELVKKYSQ 272 (785)
T ss_pred ---------ehhhhhhhcchhHHHHHHHHHHH
Confidence 3221 23445778999999974
No 59
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.10 E-value=0.0014 Score=84.40 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccccCC-CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAG-ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAg-AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+++..||.||+++. ...|.|++. .+...|.|.|||.||++++++.++.++ .+.+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~ 572 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPF-YQAD 572 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCc-ccCC
Confidence 6789999999999975 446888774 345689999999999999999999998 6553
No 60
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.05 E-value=0.0024 Score=73.28 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=44.1
Q ss_pred HHHHHHHHHHccccCC--CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 24 LTRVVEELVFNSVDAG--ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 24 p~sVVkELVENSLDAg--AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
+..++..||.||+.++ .+.|.|.+. .+...|.|.|||.||++++++.++.++
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f 303 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAF 303 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCe
Confidence 4689999999999985 456888774 345789999999999999999999987
No 61
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.04 E-value=0.0015 Score=82.44 Aligned_cols=56 Identities=29% Similarity=0.323 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHH-HHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDG-LVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eD-L~~v~~rhGaTSK 80 (1403)
+.+++.+||.||+++.. ..|.|.+. .+...|.|.|||.||+++. .+.+++++ .|+|
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf-~~~~ 640 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPF-DTTK 640 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCC-CCCC
Confidence 67899999999999863 46888775 3456899999999999999 88899988 6654
No 62
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.04 E-value=0.0011 Score=71.84 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHccccCC-CCeEEEEEecC--eeEEEEEeCCCCCCHHHHHHhhcccccCCcCC
Q 000586 23 DLTRVVEELVFNSVDAG-ATKVFVYVGVC--NCYVKVVDDGSGISRDGLVLLGERHAATSKLG 82 (1403)
Q Consensus 23 sp~sVVkELVENSLDAg-AT~I~V~Id~g--~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~ 82 (1403)
.+.+++..||.||++|. ...|.|.+... ...|+|.|||.||+++.++.++.++ .|+|-.
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~-~~~~~~ 289 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPF-FRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCe-eccCCC
Confidence 37789999999999999 59999988654 3689999999999999999999998 887643
No 63
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.04 E-value=0.0062 Score=55.93 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCc
Q 000586 23 DLTRVVEELVFNSVDAGAT--KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGF 98 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT--~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGF 98 (1403)
.+..++.||+.|++++.++ .|.|.+.. +...|.|.|+|.||+++.+..++.+. ..++... ...+-
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~-~~~~~~~----------~~~~~ 73 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPF-FRTDGRS----------RKIGG 73 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCe-EECCCCC----------CCCCc
Confidence 4678999999999999886 78887754 45689999999999999999988876 4443210 11233
Q ss_pred ccchhHHHhhcc
Q 000586 99 RGEALASISDVS 110 (1403)
Q Consensus 99 RGEALaSIa~VS 110 (1403)
.|.+|+.+..++
T Consensus 74 ~g~gl~~~~~~~ 85 (111)
T smart00387 74 TGLGLSIVKKLV 85 (111)
T ss_pred ccccHHHHHHHH
Confidence 466776665554
No 64
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.04 E-value=0.0025 Score=70.64 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+..++.+||.||++++. ..|.|.+. .+...|.|.|||.||+++.+..++.++ .+.
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~-~~~ 288 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERF-YRV 288 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCc-eec
Confidence 56799999999999864 45777664 344689999999999999999999988 543
No 65
>PRK10337 sensor protein QseC; Provisional
Probab=96.98 E-value=0.002 Score=76.08 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=43.2
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 24 LTRVVEELVFNSVDAGAT--KVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+..++.+||+||++.+.. .|.|.+.. ..|.|.|||.||++++++.++.++ ++.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f-~~~ 407 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERF-YRP 407 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccc-cCC
Confidence 566899999999998765 45555543 369999999999999999999998 654
No 66
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.96 E-value=0.0025 Score=76.55 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHccccCC----CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAG----ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAg----AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+.+|+.+|++||+++. ...|.|.+. .+...|.|.|||.||++++++.+|.++ .|+|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~-~~~~ 495 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKG-YSTK 495 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCC-CccC
Confidence 57789999999999984 346887774 344689999999999999999999997 7665
No 67
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.89 E-value=0.0029 Score=80.59 Aligned_cols=87 Identities=22% Similarity=0.118 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEe---cCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCc
Q 000586 23 DLTRVVEELVFNSVDAGA-TKVFVYVG---VCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGF 98 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA-T~I~V~Id---~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGF 98 (1403)
.+.+|+..||.||+++.. ..|.|.+. .+...|.|.|||.||+++++..+|.++ +|.|-..-. ...|-
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f-~~~~~~~~~--------~~~~G 468 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMY-YQVKDSHGG--------KPATG 468 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHh-hcccCCCCC--------CCCCC
Confidence 467899999999999863 45777663 334689999999999999999999999 776522110 12344
Q ss_pred ccchhHHHhhc-----ccEEEEEEe
Q 000586 99 RGEALASISDV-----SLLEIITKA 118 (1403)
Q Consensus 99 RGEALaSIa~V-----S~LeIiSRt 118 (1403)
.|.||+-.-.+ +.++|.|..
T Consensus 469 tGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 469 TGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred cchHHHHHHHHHHHcCCEEEEEecC
Confidence 56677644333 356666543
No 68
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.81 E-value=0.0061 Score=61.39 Aligned_cols=56 Identities=32% Similarity=0.390 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHHccccCC-----CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 21 LFDLTRVVEELVFNSVDAG-----ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 21 I~sp~sVVkELVENSLDAg-----AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+..+..++.||+.||+..+ ...|.|.+. .+...|.|.|||.||+ ++..++.+. .++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~-~~~ 99 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPL-YTS 99 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCC-ccc
Confidence 4557789999999999753 356888775 3456899999999997 355666665 544
No 69
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.74 E-value=0.0035 Score=75.08 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEe--cCe-eEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGAT--KVFVYVG--VCN-CYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT--~I~V~Id--~g~-~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+..++.+||.||+.+... .|.|.+. .+. ..|.|.|||.||+++.+..++.++ +++|
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~-~~~~ 561 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPF-FTTK 561 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCc-eeCC
Confidence 3778999999999998544 5666663 344 789999999999999999999988 6654
No 70
>PRK13557 histidine kinase; Provisional
Probab=96.62 E-value=0.006 Score=72.87 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=43.8
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe----------------c-CeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVG----------------V-CNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id----------------~-g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+++..|+.||+++.. ..|.|.+. . +...|.|.|||.||+++++..++.++ +|.|
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~-~~~~ 352 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPF-FTTK 352 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCC-cccC
Confidence 67889999999999853 34555432 1 23479999999999999999999998 7654
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=96.59 E-value=0.0056 Score=80.14 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+|+..||.||+.+.. +.|.|.+. .+...|.|.|||.||++++++.+|.++ ++.+
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~~ 838 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF-ARGN 838 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC-ccCC
Confidence 67899999999999853 35777664 445689999999999999999999998 7654
No 72
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.58 E-value=0.0051 Score=79.50 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHHHHHHHccccCC-CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccC
Q 000586 24 LTRVVEELVFNSVDAG-ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAAT 78 (1403)
Q Consensus 24 p~sVVkELVENSLDAg-AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaT 78 (1403)
+.+++..||.||+.+. ...|.|.+. .+...|.|.|||.||+++++..++.++ ++
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~ 618 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPF-VQ 618 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchh-hc
Confidence 5689999999999975 456888774 344689999999999999999999998 54
No 73
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.58 E-value=0.0064 Score=79.62 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEec-----CeeEEEEEeCCCCCCHHHHHHhhcccccCCcC
Q 000586 23 DLTRVVEELVFNSVDAGA-TKVFVYVGV-----CNCYVKVVDDGSGISRDGLVLLGERHAATSKL 81 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA-T~I~V~Id~-----g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi 81 (1403)
.+.+|+..||.||+++.+ ..|.|.+.. +...|.|.|+|.||++++++.++.++ .|.|-
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF-~t~~~ 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPF-LNQTQ 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcc-ccCCC
Confidence 467899999999998753 367777642 23689999999999999999999998 76553
No 74
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.55 E-value=0.0058 Score=79.36 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEe--cCe-eEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGA-TKVFVYVG--VCN-CYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA-T~I~V~Id--~g~-~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+.+++..||.||+.... ..|.|.+. .+. ..|.|.|||.||+++++..++.++ ++.+
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~ 639 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAF-TQAD 639 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhh-hccC
Confidence 357899999999998753 45777663 445 789999999999999999999998 6654
No 75
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.49 E-value=0.0099 Score=76.98 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccccCC--CCeEEEEEec-----------------CeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAG--ATKVFVYVGV-----------------CNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAg--AT~I~V~Id~-----------------g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+++..||.||+++. ...|.|.+.. +...|.|.|||.||+++++..+|.++ +|+|
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F-~~~~ 635 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPF-FTTR 635 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCc-ccCC
Confidence 6789999999999974 3567776632 23579999999999999999999998 7654
No 76
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.37 E-value=0.013 Score=74.95 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+..++..||+||+++.. ..|.|.+. .+...|.|.|||.||++++++.++.++ .+.|
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~ 657 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVR 657 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecC
Confidence 367899999999999753 45777664 345689999999999999999999998 7765
No 77
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.35 E-value=0.0099 Score=76.58 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccccCCC-CeEEEEEe--c---C--eeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcc
Q 000586 24 LTRVVEELVFNSVDAGA-TKVFVYVG--V---C--NCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGT 95 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA-T~I~V~Id--~---g--~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~T 95 (1403)
+.+++..||.||+.+.. ..|.|.+. . + ...|.|.|||.||+++++..++.++ +...-.. . ..
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~~~-----~----~~ 478 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAF-RQADASI-----S----RR 478 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhh-ccCCCCC-----C----CC
Confidence 66899999999998843 34555442 1 1 2579999999999999999999988 5432110 0 12
Q ss_pred cCcccchhHHHhhc-----ccEEEEEEe
Q 000586 96 FGFRGEALASISDV-----SLLEIITKA 118 (1403)
Q Consensus 96 lGFRGEALaSIa~V-----S~LeIiSRt 118 (1403)
.|-.|.||+-...+ +.++|.|..
T Consensus 479 ~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 479 HGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred CCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 34457777633333 356666543
No 78
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.32 E-value=0.016 Score=66.03 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccccCC---CCeEEEEEecC------------eeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 24 LTRVVEELVFNSVDAG---ATKVFVYVGVC------------NCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 24 p~sVVkELVENSLDAg---AT~I~V~Id~g------------~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
+.+|+..||.||+++. ...|.|.+... ...|.|.|||.||+++.+..+|.++ +|+|
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~-~~~~ 308 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPM-VSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCc-ccCC
Confidence 7899999999999874 34566654211 1368999999999999999999998 7665
No 79
>PRK09835 sensor kinase CusS; Provisional
Probab=96.27 E-value=0.024 Score=67.35 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+..++.+||.||+.+.. ..|.|.+. .+...|.|.|||.||++++++.++.++ +++.
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f-~~~~ 435 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRF-YRVD 435 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc-ccCC
Confidence 378899999999999853 35877764 345689999999999999999999998 6653
No 80
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.17 E-value=0.013 Score=78.37 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHccccCCCC-eEEEEE-----ecC--eeEEEEEeCCCCCCHHHHHHhhcccccCCc
Q 000586 23 DLTRVVEELVFNSVDAGAT-KVFVYV-----GVC--NCYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgAT-~I~V~I-----d~g--~~~I~V~DNG~GIs~eDL~~v~~rhGaTSK 80 (1403)
.+.+|+..||.||+++... .|.|.+ +.+ ...|.|.|||.||+++++..++.++ .+.+
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f-~~~~ 892 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRY-SQTS 892 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccc-cccc
Confidence 4678999999999998543 344433 122 2468999999999999999999998 7654
No 81
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.99 E-value=0.044 Score=72.28 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=45.0
Q ss_pred HHHHHHHHHHccccCCC-CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhcccccCC
Q 000586 24 LTRVVEELVFNSVDAGA-TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA-T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTS 79 (1403)
+.+|+..||.||+.+.. ..|.|.+ +.+...|.|.|||.||+++++..++.++ ++.
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF-~~~ 620 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPF-FQV 620 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhccc-ccC
Confidence 56899999999999743 3566665 3455689999999999999999999998 654
No 82
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.70 E-value=0.028 Score=59.22 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=42.9
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 20 VLFDLTRVVEELVFNSVDAGA-----TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 20 VI~sp~sVVkELVENSLDAgA-----T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
.+..+.-||.|++.||+.-|- ..|.|.+ ..+...|.|.|+|.||+++.+...+.++
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~ 101 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPY 101 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCC
Confidence 345577899999999997653 3567766 4456799999999999988776666555
No 83
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.38 E-value=0.058 Score=68.90 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=34.2
Q ss_pred HHHHHHHHccccCCC--------------CeEEEEEe--cCeeEEEEEeCCCCCCHHHHH
Q 000586 26 RVVEELVFNSVDAGA--------------TKVFVYVG--VCNCYVKVVDDGSGISRDGLV 69 (1403)
Q Consensus 26 sVVkELVENSLDAgA--------------T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~ 69 (1403)
..+..||.||+|.|- ..|.|... .+...|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 335689999999862 35888774 345689999999999998765
No 84
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.24 E-value=0.029 Score=71.97 Aligned_cols=49 Identities=31% Similarity=0.364 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHccccCC--------------CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHH
Q 000586 22 FDLTRVVEELVFNSVDAG--------------ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVL 70 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAg--------------AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~ 70 (1403)
+.+..=+--||.||+|-| .-+|.++-. ++...|+|.|||.||+++-+..
T Consensus 431 E~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~ 495 (716)
T COG0643 431 ERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIRE 495 (716)
T ss_pred HHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHH
Confidence 333444667899999987 337888774 3446899999999999997653
No 85
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.06 E-value=0.032 Score=65.65 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHccccCC--CCeEEEEEec-C-eeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCc
Q 000586 23 DLTRVVEELVFNSVDAG--ATKVFVYVGV-C-NCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGF 98 (1403)
Q Consensus 23 sp~sVVkELVENSLDAg--AT~I~V~Id~-g-~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGF 98 (1403)
...+|+-.+|.||+.-+ ..+|+|.+.. + ...|.|.|.|.|||.+|++.+|.|| +- .++-.+ .+.|-
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrf-yR-----vdkARs----R~~gG 411 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRF-YR-----VDKARS----RKMGG 411 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHH-hh-----hhhhhh----hcCCC
Confidence 46799999999999875 4588888854 3 3589999999999999999999998 32 222222 57788
Q ss_pred ccchhH
Q 000586 99 RGEALA 104 (1403)
Q Consensus 99 RGEALa 104 (1403)
-|.+|+
T Consensus 412 TGLGLa 417 (459)
T COG5002 412 TGLGLA 417 (459)
T ss_pred CchhHH
Confidence 888887
No 86
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.05 E-value=0.08 Score=55.91 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=55.8
Q ss_pred CcccCHHHHHHHHHHccccCC-----CCeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCcccccccc
Q 000586 19 TVLFDLTRVVEELVFNSVDAG-----ATKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDAT 91 (1403)
Q Consensus 19 eVI~sp~sVVkELVENSLDAg-----AT~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~ 91 (1403)
+.+.++.-||.|++-||+..| ...|.|.+ ..+...|.|.|+|.|++++.+...+.+. .+.+-. ++
T Consensus 38 ~~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~-~~~~~~--~~----- 109 (159)
T TIGR01924 38 DDIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPY-DGSEPI--DD----- 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCC-CCCCCc--cc-----
Confidence 445668889999999999765 24677765 4556789999999999988776655443 222211 11
Q ss_pred CCcccCcccchhHHHhhccc-EEEE
Q 000586 92 GIGTFGFRGEALASISDVSL-LEII 115 (1403)
Q Consensus 92 gI~TlGFRGEALaSIa~VS~-LeIi 115 (1403)
+.-.|.||+-+-.++. +.+.
T Consensus 110 ----~~~~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 110 ----LREGGLGLFLIETLMDEVEVY 130 (159)
T ss_pred ----CCCCccCHHHHHHhccEEEEE
Confidence 1123667777777763 5554
No 87
>PRK03660 anti-sigma F factor; Provisional
Probab=94.98 E-value=0.15 Score=51.77 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHccccCCC-----CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 21 LFDLTRVVEELVFNSVDAGA-----TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 21 I~sp~sVVkELVENSLDAgA-----T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
+..+..++.||+.||+..+. ..|.|.+. .+...|.|.|+|.||++ +...+.+.
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~ 96 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPL 96 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCC
Confidence 46788999999999996542 35777664 34567999999999975 44455554
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.77 E-value=0.12 Score=66.22 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred HHHHHHHHHHccccCCCCe--EEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhcccccC
Q 000586 24 LTRVVEELVFNSVDAGATK--VFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHAAT 78 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT~--I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaT 78 (1403)
+.+|+..|||||+.-+... |.|.+ +.+...+.|.|||.|||+++++.+|.++ ++
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F-~r 833 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKF-YR 833 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhh-hc
Confidence 4689999999999876443 44444 3455689999999999999999999998 65
No 89
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=94.27 E-value=0.16 Score=60.13 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHHccc-cCCCCeEEEEEec--CeeEEEEEeCCCCCC
Q 000586 22 FDLTRVVEELVFNSV-DAGATKVFVYVGV--CNCYVKVVDDGSGIS 64 (1403)
Q Consensus 22 ~sp~sVVkELVENSL-DAgAT~I~V~Id~--g~~~I~V~DNG~GIs 64 (1403)
.+++.++.|++-|=. -|.|+.|+|.+-. ....++|.|||.|++
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 678999999999977 5889999998854 346899999999997
No 90
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.82 E-value=0.066 Score=65.89 Aligned_cols=43 Identities=30% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000586 24 LTRVVEELVFNSVDA-GATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 24 p~sVVkELVENSLDA-gAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1403)
+.+++.|++.||+.. +++.|.|.+. .+...|.|+|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 567899999999985 5677888774 345689999999999854
No 91
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.11 E-value=0.1 Score=64.57 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.5
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEec--CeeEEEEEeCCCCCCHH
Q 000586 24 LTRVVEELVFNSVDA-GATKVFVYVGV--CNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 24 p~sVVkELVENSLDA-gAT~I~V~Id~--g~~~I~V~DNG~GIs~e 66 (1403)
+..+|.|+|.||+.. +|+.|.|.+.. +...|.|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 568999999999984 57888888743 45689999999999864
No 92
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.09 E-value=0.23 Score=49.26 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHHHccccCCCC-----eEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccC
Q 000586 20 VLFDLTRVVEELVFNSVDAGAT-----KVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATG 92 (1403)
Q Consensus 20 VI~sp~sVVkELVENSLDAgAT-----~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~g 92 (1403)
.+..+.-||.|++-||+..|.. .|.|.+ +.+...|.|.|+|.|+++..+......- .
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~-~--------------- 91 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWE-P--------------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccccc-C---------------
Confidence 3456778999999999987753 677775 4556799999999999877443222111 0
Q ss_pred CcccCcccchhHHHhhcc-cEEE
Q 000586 93 IGTFGFRGEALASISDVS-LLEI 114 (1403)
Q Consensus 93 I~TlGFRGEALaSIa~VS-~LeI 114 (1403)
....-+|.||+-|.+++ ++.+
T Consensus 92 -~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 92 -DSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred -CCCCCCCcCHHHHHHHHcEEEE
Confidence 12333466788787776 4655
No 93
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.08 E-value=0.098 Score=64.45 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcccc-CCCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000586 24 LTRVVEELVFNSVD-AGATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 24 p~sVVkELVENSLD-AgAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1403)
+-++|+|-+-|++. |.|+.|.|.+. .|...|.|+|||+||+..
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 45799999999995 88999999884 356799999999999865
No 94
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=93.07 E-value=0.2 Score=61.01 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHHHccccCCCC------eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhh
Q 000586 21 LFDLTRVVEELVFNSVDAGAT------KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLG 72 (1403)
Q Consensus 21 I~sp~sVVkELVENSLDAgAT------~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~v~ 72 (1403)
...|.-++.=|||||+-+|.. .|.|.+. .+...++|.|||.||+++....+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 467888999999999999844 5666663 344689999999999987555443
No 95
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=92.99 E-value=0.12 Score=64.47 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccccCCCC---------eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcccccCCcC
Q 000586 24 LTRVVEELVFNSVDAGAT---------KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHAATSKL 81 (1403)
Q Consensus 24 p~sVVkELVENSLDAgAT---------~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi 81 (1403)
+.+|.-.|++||.+|... .|.++.+. |...+.|.|||.|.+.+++..++++| .|.|-
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPY-vTtr~ 668 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPY-VTTRE 668 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCc-eeccc
Confidence 468899999999998433 47777753 44689999999999999999999999 87753
No 96
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.43 E-value=0.16 Score=59.73 Aligned_cols=45 Identities=33% Similarity=0.410 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHcccc-CCCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000586 22 FDLTRVVEELVFNSVD-AGATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 22 ~sp~sVVkELVENSLD-AgAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1403)
..+..+|+|.|-|++- |+|+.|.|.+. .+...+.|+|||.|.+.+
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~ 325 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPD 325 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCcc
Confidence 4567899999999995 88999999985 345789999999999855
No 97
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=92.30 E-value=0.19 Score=61.04 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHccccCCCC---eEEEEEec---CeeEEEEEeCCCCCCHHHHHHhhcccccCCcCC
Q 000586 22 FDLTRVVEELVFNSVDAGAT---KVFVYVGV---CNCYVKVVDDGSGISRDGLVLLGERHAATSKLG 82 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAgAT---~I~V~Id~---g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~ 82 (1403)
.++.+|+-.|+-||+||..+ .|.|.... +...|.|.|||-|-+-+-++.++.++ .|||--
T Consensus 563 v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PF-ttsK~v 628 (673)
T COG4192 563 VSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPF-TTSKEV 628 (673)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCc-cccccc
Confidence 46889999999999999754 57776643 34689999999999999999999999 999843
No 98
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=91.77 E-value=0.24 Score=57.85 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=44.7
Q ss_pred HHHHHHHHHHccccCCC------CeEEEEE--------ecC----eeEEEEEeCCCCCCHHHHHHhhcccccCCcC
Q 000586 24 LTRVVEELVFNSVDAGA------TKVFVYV--------GVC----NCYVKVVDDGSGISRDGLVLLGERHAATSKL 81 (1403)
Q Consensus 24 p~sVVkELVENSLDAgA------T~I~V~I--------d~g----~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi 81 (1403)
+.+|+-.||.||..|.+ ..|.++- ... ...|.|.|||.||+++=.+.+|-++ .|+|-
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~-Vs~r~ 316 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPM-VSGRE 316 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccc-cccCC
Confidence 57899999999999988 4555532 111 1369999999999999889999998 77763
No 99
>PRK13560 hypothetical protein; Provisional
Probab=91.15 E-value=0.22 Score=62.96 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHccccCC-----CCeEEEEEec---CeeEEEEEeCCCCCCHH
Q 000586 24 LTRVVEELVFNSVDAG-----ATKVFVYVGV---CNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 24 p~sVVkELVENSLDAg-----AT~I~V~Id~---g~~~I~V~DNG~GIs~e 66 (1403)
+..++.+||.||+++. +..|.|.+.. +...|.|.|||.||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 3458899999999863 3468877742 34689999999999865
No 100
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=88.74 E-value=0.85 Score=58.87 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=43.6
Q ss_pred CcccCHHHHHHHHHHcccc----CCCCeEEEEEecCeeEEEEEeCCCCCCHHHH
Q 000586 19 TVLFDLTRVVEELVFNSVD----AGATKVFVYVGVCNCYVKVVDDGSGISRDGL 68 (1403)
Q Consensus 19 eVI~sp~sVVkELVENSLD----AgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL 68 (1403)
..+..+..+..|++-||.| ++-..|.|.|+.+...|.|.+||.||+-+-.
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCCEEEEEeCCCcceeeec
Confidence 6678899999999999998 4566899999988889999999999997743
No 101
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=87.66 E-value=0.62 Score=57.04 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=33.7
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEe---cCeeEEEEEeCCCCCCH
Q 000586 24 LTRVVEELVFNSVDA-GATKVFVYVG---VCNCYVKVVDDGSGISR 65 (1403)
Q Consensus 24 p~sVVkELVENSLDA-gAT~I~V~Id---~g~~~I~V~DNG~GIs~ 65 (1403)
+.+++.+|+.||+.. .+..|.|.+. .+...|.|.|||.||++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 567999999999984 4557888774 24468999999999985
No 102
>PRK13559 hypothetical protein; Provisional
Probab=86.07 E-value=0.82 Score=52.78 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHccccCCC-----CeEEEEE--e--cCeeEEEEEeCCCCCCH
Q 000586 23 DLTRVVEELVFNSVDAGA-----TKVFVYV--G--VCNCYVKVVDDGSGISR 65 (1403)
Q Consensus 23 sp~sVVkELVENSLDAgA-----T~I~V~I--d--~g~~~I~V~DNG~GIs~ 65 (1403)
.+..|+.|||.||+..|+ ..|.|.+ . .+...|.|.|||.|+++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 356899999999999864 4788877 3 23468999999999764
No 103
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=84.66 E-value=3.4 Score=52.55 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHHHHHccccCC---CCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhcc
Q 000586 24 LTRVVEELVFNSVDAG---ATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGER 74 (1403)
Q Consensus 24 p~sVVkELVENSLDAg---AT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~r 74 (1403)
+.++...||.|||.-| +..|.|..+. ..+.+.|.|||.||++.-++.+|.-
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~i 692 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVI 692 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHH
Confidence 4578889999999765 4678998753 3578999999999999998886543
No 104
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.29 E-value=1.4 Score=49.44 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEE--ecCe--eEEEEEeCCCCCCHH
Q 000586 22 FDLTRVVEELVFNSVDAGAT-----KVFVYV--GVCN--CYVKVVDDGSGISRD 66 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAgAT-----~I~V~I--d~g~--~~I~V~DNG~GIs~e 66 (1403)
..+.-+|.||+-||+.-|+. .|.|.+ +.++ ..+.|.|||.|++.+
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 45678999999999976655 566665 3443 689999999999843
No 105
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=83.08 E-value=1.2 Score=54.92 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHHHHHHccccCC--------CCeEEEEEecCeeEEEEEeCCCCCCHH
Q 000586 24 LTRVVEELVFNSVDAG--------ATKVFVYVGVCNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 24 p~sVVkELVENSLDAg--------AT~I~V~Id~g~~~I~V~DNG~GIs~e 66 (1403)
|.=++.=||||||.-| +-.|.|..+.+...|.|+|||.||+++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 5556778999999654 444555556667899999999999975
No 106
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=78.04 E-value=4.6 Score=48.71 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHccccCC----------CCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 22 FDLTRVVEELVFNSVDAG----------ATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAg----------AT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
.-+..++-||+.||..|- -.-|.|.|-. +...|.|.|-|-||+.++++.++.=+
T Consensus 259 shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ 324 (414)
T KOG0787|consen 259 SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYM 324 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhh
Confidence 456789999999999882 2237777743 44689999999999999999998743
No 107
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=75.77 E-value=9.7 Score=40.39 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHHHccccCC-C-----CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccc
Q 000586 20 VLFDLTRVVEELVFNSVDAG-A-----TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERH 75 (1403)
Q Consensus 20 VI~sp~sVVkELVENSLDAg-A-----T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~v~~rh 75 (1403)
-+.++..||.|++.|++..+ + +.|.|.+ +.+...|.|.|.|.||. ++.....+.
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~ 98 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC
Confidence 35788899999999999753 3 4566655 56678999999997775 555555543
No 108
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=73.56 E-value=3.7 Score=48.79 Aligned_cols=45 Identities=36% Similarity=0.379 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHccc-cCCCCeEEEEEec--CeeEEEEEeCCCCCCHH
Q 000586 22 FDLTRVVEELVFNSV-DAGATKVFVYVGV--CNCYVKVVDDGSGISRD 66 (1403)
Q Consensus 22 ~sp~sVVkELVENSL-DAgAT~I~V~Id~--g~~~I~V~DNG~GIs~e 66 (1403)
+.++.||.|-+-|== -||||+|+|.+.. +...+.|.|||.|.+..
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~ 405 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVK 405 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccch
Confidence 567788888887743 5799999999964 44689999999999854
No 109
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=61.66 E-value=41 Score=42.98 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=43.5
Q ss_pred CcccccCceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHh
Q 000586 1160 NKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL 1208 (1403)
Q Consensus 1160 sK~~f~~~rVIGQvdkkFIL~E~~dgLyIIDQHAAHERI~yErL~k~l~ 1208 (1403)
-+++|.+..++|-++.++++++.+..||++|--..-+-..|..+...+.
T Consensus 466 l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~ 514 (694)
T KOG1979|consen 466 LTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFG 514 (694)
T ss_pred HHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhc
Confidence 3578889999999999999999999999999998888888888877764
No 110
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=48.89 E-value=11 Score=35.09 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=27.8
Q ss_pred HhhccccccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 000586 1317 KACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1357 (1403)
Q Consensus 1317 ~ACRsAIK~GD~LS~eEM~~LI~eL~~c~~Pf~CPHGRPT~ 1357 (1403)
.|++-|-+.-..|+.+-...|.+-| .+|-.||||.|+.
T Consensus 32 ~a~~~A~~iEH~is~e~~~~l~~~l---~~~~~~P~~~~ip 69 (71)
T PF02742_consen 32 EAEEEACRIEHVISPETIERLCKFL---GFPETCPHGNPIP 69 (71)
T ss_dssp HHHHHHHHHGCCS-HHHHHHHHHHT---TCTSBETTSCBST
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---cCCCcCcCCCCCC
Confidence 4555555567789998888887766 5688999999974
No 111
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=33.53 E-value=34 Score=36.78 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.0
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 000586 1316 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPT 1356 (1403)
Q Consensus 1316 S~ACRsAIK~GD~LS~eEM~~LI~eL~~c~~Pf~CPHGRPT 1356 (1403)
..||+-|=.+-..++.+-+.+|.+-|.. |-.||||+|+
T Consensus 95 ~~~~~ea~~leh~~s~~~~~rl~~~l~~---~~~~p~g~~i 132 (154)
T COG1321 95 EEAHEEAEGLEHALSDETAERLDELLGF---PTRCPHGKPI 132 (154)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhCC---CccCCCCCcc
Confidence 4567777777888998877777766654 8899999998
No 112
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=33.12 E-value=27 Score=42.34 Aligned_cols=63 Identities=32% Similarity=0.572 Sum_probs=46.4
Q ss_pred HHHHHHHccccCCCCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhcccccCCcCCCccccccccCCcccCcccchhHHH
Q 000586 27 VVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGHLADMDDATGIGTFGFRGEALASI 106 (1403)
Q Consensus 27 VVkELVENSLDAgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~v~~rhGaTSKi~s~eDL~~~~gI~TlGFRGEALaSI 106 (1403)
-+-|||..|||+||++|.|-|-... -.|-|.|| +..++-++ . |.+. ..+|+-|-.|..|
T Consensus 113 GtGeLI~~Ald~Ga~~IiiGiGGSA----TnDgG~Gm----l~ALG~~f------~---d~~g----~~i~~gG~~L~~l 171 (378)
T COG1929 113 GTGELIKHALDAGAKHIIIGIGGSA----TNDGGAGM----LQALGAQF------L---DADG----NDLGFGGGSLANL 171 (378)
T ss_pred cHHHHHHHHHhCCCcEEEEeccccc----cCCchHHH----HHHhCchh------h---hccC----CCccccchhhhhh
Confidence 3679999999999999999986532 35889999 55566555 1 2221 4678889899888
Q ss_pred hhcc
Q 000586 107 SDVS 110 (1403)
Q Consensus 107 a~VS 110 (1403)
+.+.
T Consensus 172 ~~id 175 (378)
T COG1929 172 ASID 175 (378)
T ss_pred hhcc
Confidence 8763
No 113
>PF14501 HATPase_c_5: GHKL domain
Probab=23.14 E-value=91 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHccccCC-----CCeEEEEEe--cCeeEEEEEeC
Q 000586 22 FDLTRVVEELVFNSVDAG-----ATKVFVYVG--VCNCYVKVVDD 59 (1403)
Q Consensus 22 ~sp~sVVkELVENSLDAg-----AT~I~V~Id--~g~~~I~V~DN 59 (1403)
.++..++.-|++||++|. ...|.|.+. .+...|.|.-.
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 357789999999999974 446777774 34455666544
Done!