Query 000586
Match_columns 1403
No_of_seqs 340 out of 2694
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 18:00:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000586.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_356-360//hhsearch_pdb/000586hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4l_A DNA mismatch repair pro 1.0 1 1 533.9 30.4 330 1-355 3-362 (367)
2 3na3_A DNA mismatch repair pro 1.0 1 1 526.2 31.0 338 2-363 7-347 (348)
3 1h7s_A PMS1 protein homolog 2; 1.0 1 1 491.4 30.4 329 1-353 12-365 (365)
4 1b63_A MUTL; DNA mismatch repa 1.0 1 1 474.9 31.8 327 1-352 2-333 (333)
5 3kdg_A DNA mismatch repair pro 1.0 1 1 347.8 19.1 194 1161-1373 3-196 (197)
6 3ncv_A DNA mismatch repair pro 1.0 1 1 347.6 20.4 195 1162-1374 25-220 (220)
7 1x9z_A DNA mismatch repair pro 1.0 1 1 258.6 16.5 177 1163-1370 5-185 (188)
8 1ei1_A DNA gyrase B, GYRB; ATP 1.0 1 1 232.9 20.2 320 2-354 7-363 (391)
9 1s16_A Topoisomerase IV subuni 1.0 1 1 231.8 22.3 322 2-354 8-361 (390)
10 3cwv_A DNA gyrase, B subunit, 1.0 1 1 220.4 21.4 307 13-354 15-347 (369)
No 1
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=533.93 Aligned_cols=330 Identities=27% Similarity=0.403 Sum_probs=294.8
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9885348968999871588404999999999971224899819999954-702999995999999877997302556677
Q 000586 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGV-CNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 1 M~~IkkLpe~vi~kIrSgevI~Sl~sVVkELVeNSLDAgAT~I~I~Id~-g~~~I~V~DNG~GIs~eDL~~vg~r~G~TS 79 (1403)
|++|++||++++++|+||++|.++.+||+|||+||+||+|+.|.|.+.. +...|+|.|||+||+++++..++.+| +||
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~-~ts 81 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKH-YTS 81 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCE-EC-
T ss_pred CCCCEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHCCCEECC-CCC
T ss_conf 8840229989998753777102899999999999997799879999993997899999899871855723000245-567
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEE-CCEEEEECCCCCCCCCCEEEEECCCCCC
Q ss_conf 677865455656876558640036877520447999984599974999991-8455440215666899709999164467
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMK-GSKCLYLGIDDERKDVGTTVVSRDLFYN 158 (1403)
Q Consensus 80 Ki~s~eDL~~~~gi~TlGFRGEALaSIs~vS~VtI~SRt~g~~~g~~i~~~-~g~~~~~~~~~~~~~~GTTV~V~nLF~N 158 (1403)
|+.+++|+.. +.++|||||||+||+++|+|+|+||+.+ ..+|++.++ +|..... .+...++||+|+|+|||+|
T Consensus 82 K~~~~~Dl~~---i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~~--~~~~~~~GTtV~v~~LF~n 155 (367)
T 3h4l_A 82 KIAKFQDVAK---VQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITSK--TTTSRNKGTTVLVSQLFHN 155 (367)
T ss_dssp --------CC---CCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEEE--EEECCSSEEEEEEESTTTT
T ss_pred CCCCHHHHHH---HHCCCCCCHHHHHHHCCCEEEEEEEECC-CCEEEEEECCCCCEEEE--CCCCCCCCEEEEECHHHCC
T ss_conf 6774455545---3225866668888642578999999789-77799999289818840--5665999749997545303
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC---CCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEE-
Q ss_conf 15688884118178999999999999852998099999678---98539982799998899997418322357389840-
Q 000586 159 QPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME---SEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNA- 234 (1403)
Q Consensus 159 lPVRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~---s~k~ll~t~ssss~ls~I~sIfG~~vas~L~~I~~- 234 (1403)
+|+|++.+.++.+.++..|..++++||++||+|+|+|.+.. ....++.+.+..+..+++.++||...+.+|.+++.
T Consensus 156 ~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~ 235 (367)
T 3h4l_A 156 LPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLV 235 (367)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEE
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCHHHHHCCEEEECC
T ss_conf 95556664146577899999999999854898599999757888612899779999999999999697877301787541
Q ss_pred ----------------------CCCCEEEEEEEECCCC--CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf ----------------------3897499999957886--7877643789976823335147899999998602677622
Q 000586 235 ----------------------NDGALEISGYISSPYD--SISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWK 290 (1403)
Q Consensus 235 ----------------------e~~~ikIsGfIS~P~~--~rssKd~QFIFINGRpV~~~~I~KlIneL~~sFe~l~~~k 290 (1403)
+...++|+|||++|.. .+.++++||+|||||||..+.+.++|++.|..|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~------ 309 (367)
T 3h4l_A 236 LDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN------ 309 (367)
T ss_dssp EECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCEECCHHHHHHHHHHHHHCC------
T ss_conf 35564221111123444333355786799999927854556777874899988979457799999999987448------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25675547888888994799999848993112346998839709923899999999999985003
Q 000586 291 ANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 355 (1403)
Q Consensus 291 ~~~~~~~~~r~~~~ryPVfILnI~CPps~vDVNVePsKteV~Fkdee~IL~lIkkaIk~fL~k~~ 355 (1403)
..+||+|+|+|+|||+.||||+||+|++|+|.+|+.|+.+|+++|.++|.+..
T Consensus 310 ------------~~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 310 ------------NVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp ------------SSCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEEECCHHHCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf ------------99992899999828277162088987979976879999999999999985447
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=526.18 Aligned_cols=338 Identities=28% Similarity=0.392 Sum_probs=301.0
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCE-EEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 88534896899987158840499999999997122489981999995470-29999959999998779973025566776
Q 000586 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHAATSK 80 (1403)
Q Consensus 2 ~~IkkLpe~vi~kIrSgevI~Sl~sVVkELVeNSLDAgAT~I~I~Id~g~-~~I~V~DNG~GIs~eDL~~vg~r~G~TSK 80 (1403)
++|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.++.+. ..|+|.|||+||+++++..++.+| +|||
T Consensus 7 ~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~-~tsK 85 (348)
T 3na3_A 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERF-TTSK 85 (348)
T ss_dssp CCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTT-CCSS
T ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCC-CCCC
T ss_conf 000029989997642567121899999999999997689879999991997899999899674967843441435-6555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 77865455656876558640036877520447999984599974999991845544021566689970999916446715
Q 000586 81 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 160 (1403)
Q Consensus 81 i~s~eDL~~~~gi~TlGFRGEALaSIs~vS~VtI~SRt~g~~~g~~i~~~~g~~~~~~~~~~~~~~GTTV~V~nLF~NlP 160 (1403)
+.+++|+.. +.++|||||||+||+++|+++|+||+.++..+|++.+.+|.... ...+...++||+|+|+|||+|+|
T Consensus 86 ~~~~~dl~~---i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~-~~~~~~~~~GTtV~v~~LF~n~P 161 (348)
T 3na3_A 86 LQSFEDLAS---ISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKA-PPKPCAGNQGTQITVEDLFYNIA 161 (348)
T ss_dssp CCCC------------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESS-CCEEECCCSEEEEEEESTTTTCH
T ss_pred CCCCHHHHC---CCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCEEEE-EEEEECCCCCCEEEECCCCCCCC
T ss_conf 674012210---33478677088874124689999998998736999994998832-24570389970999770003385
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC--C
Q ss_conf 68888411817899999999999985299809999967898539982799998899997418322357389840389--7
Q 000586 161 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDG--A 238 (1403)
Q Consensus 161 VRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~k~ll~t~ssss~ls~I~sIfG~~vas~L~~I~~e~~--~ 238 (1403)
+|+++++ +.+.++..|.+++++||++||+|+|+|.+.++....+.+.+..+..+++.++||..++.++.+++.+.+ .
T Consensus 162 ~R~k~lk-~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~ 240 (348)
T 3na3_A 162 TRRKALK-NPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLA 240 (348)
T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGT
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHCHHHHHHCEEEEEECCCCC
T ss_conf 1566614-607899999999999985179869999999988787514899789999999969676752089975268763
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 49999995788678776437899768233351478999999986026776222567554788888899479999984899
Q 000586 239 LEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHS 318 (1403)
Q Consensus 239 ikIsGfIS~P~~~rssKd~QFIFINGRpV~~~~I~KlIneL~~sFe~l~~~k~~~~~~~~~r~~~~ryPVfILnI~CPps 318 (1403)
++|+|||++|... ..+..||+|||||||.++.+.++|++.|..|. + .++||+++|+|+|||+
T Consensus 241 ~~i~G~is~p~~~-~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l---~--------------~~~~P~~~L~l~~~p~ 302 (348)
T 3na3_A 241 FKMNGYISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYL---P--------------KNTHPFLYLSLEISPQ 302 (348)
T ss_dssp EEEEEEEECSSCC-BSSCEEEEEETTEECCCTTHHHHHHHHHHTTS---C--------------TTCBCEEEEEEECC--
T ss_pred EEEEEEEECCCCC-CCCCCEEEEECCEEECCHHHHHHHHHHHHHHC---C--------------CCCCEEEEEEEEECHH
T ss_conf 8999999678667-78643899988909638899999999999757---5--------------8996099999992816
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 311234699883970992389999999999998500378887400
Q 000586 319 LYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVD 363 (1403)
Q Consensus 319 ~vDVNVePsKteV~Fkdee~IL~lIkkaIk~fL~k~~~~~~~s~~ 363 (1403)
.||||+||+|++|+|.+++.|+.+|+++|.+.|.......+|.++
T Consensus 303 ~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~~l~~~~~sr~f~~~ 347 (348)
T 3na3_A 303 NVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQ 347 (348)
T ss_dssp --------------------CTHHHHHHHHHHHC-----------
T ss_pred HEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 640205898288997598999999999999998557875546525
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=1.00 E-value=1 Score=491.42 Aligned_cols=329 Identities=26% Similarity=0.354 Sum_probs=289.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9885348968999871588404999999999971224899819999954-702999995999999877997302556677
Q 000586 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGV-CNCYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 1 M~~IkkLpe~vi~kIrSgevI~Sl~sVVkELVeNSLDAgAT~I~I~Id~-g~~~I~V~DNG~GIs~eDL~~vg~r~G~TS 79 (1403)
|++|++||+.++++|+||++|.++.++|+|||+||+||+|+.|.|.+.. +...|+|.|||+||+++++..++.++ +||
T Consensus 12 ~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~-~ts 90 (365)
T 1h7s_A 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKH-HTS 90 (365)
T ss_dssp -----------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC------
T ss_pred CHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHC-CCC
T ss_conf 0100249989998763788244299999999999987899879999995994899999799985989999986411-124
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEE-CCEEEEECCCCCCCCCCEEEEECCCCCC
Q ss_conf 677865455656876558640036877520447999984599974999991-8455440215666899709999164467
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMK-GSKCLYLGIDDERKDVGTTVVSRDLFYN 158 (1403)
Q Consensus 80 Ki~s~eDL~~~~gi~TlGFRGEALaSIs~vS~VtI~SRt~g~~~g~~i~~~-~g~~~~~~~~~~~~~~GTTV~V~nLF~N 158 (1403)
|....+|+.. +.++||||+||+|++.+|.++|+||+.+...+|++.++ +|.... ..+....+||+|+|++||+|
T Consensus 91 K~~~~~dl~~---i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~GT~V~v~~LF~n 165 (365)
T 1h7s_A 91 KIQEFADLTQ---VETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQ--KTPYPRPRGTTVSVQQLFST 165 (365)
T ss_dssp -----CCTTC---SEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEE--EEECCCCSEEEEEEESTTTT
T ss_pred CCCCCCCHHC---CCCCCCCCCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCEEE--ECCCCCCCCCEEEEEECCCC
T ss_conf 3454321100---125687875356666406089999308985349999968984676--44567899839999634323
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---CEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 1568888411817899999999999985299809999967898---5399827999988999974183223573898403
Q 000586 159 QPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE---DELLCTCSSSSPLALLISSFGIEDFSFLDEVNAN 235 (1403)
Q Consensus 159 lPVRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~---k~ll~t~ssss~ls~I~sIfG~~vas~L~~I~~e 235 (1403)
+|+|++.+.++.+.++..|+.++++||+.+|+|+|++.+.... ..++.+.+..+..+++..+||...+..+.++...
T Consensus 166 ~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~ 245 (365)
T 1h7s_A 166 LPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQL 245 (365)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCC
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHCEEEEECC
T ss_conf 63145553221688999999865434212892499997568777078999869973599999986096767213797623
Q ss_pred C------------------CCEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8------------------974999999578867--87764378997682333514789999999860267762225675
Q 000586 236 D------------------GALEISGYISSPYDS--ISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGF 295 (1403)
Q Consensus 236 ~------------------~~ikIsGfIS~P~~~--rssKd~QFIFINGRpV~~~~I~KlIneL~~sFe~l~~~k~~~~~ 295 (1403)
. ..++|+|||+.|... +.++++||+|||||||..+.+.++|++.|..+. +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~---~------- 315 (365)
T 1h7s_A 246 PPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYN---R------- 315 (365)
T ss_dssp CCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTC---T-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHC---C-------
T ss_conf 775321221232234456663799999947622345688764699999868148899999999998647---6-------
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 5478888889947999998489931123469988397099238999999999999850
Q 000586 296 LKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK 353 (1403)
Q Consensus 296 ~~~~r~~~~ryPVfILnI~CPps~vDVNVePsKteV~Fkdee~IL~lIkkaIk~fL~k 353 (1403)
.+||+++|+|+|||..||||+||+|++|+|.+|+.|+.+|+.+|.++|.+
T Consensus 316 --------~~~P~~~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~~ 365 (365)
T 1h7s_A 316 --------HQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365 (365)
T ss_dssp --------TCBCCEEEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHCC
T ss_pred --------CCCCEEEEEEEECHHHCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf --------67957999999681783327888858899758899999999999998649
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=1.00 E-value=1 Score=474.86 Aligned_cols=327 Identities=28% Similarity=0.418 Sum_probs=285.7
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCE-EEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 988534896899987158840499999999997122489981999995470-2999995999999877997302556677
Q 000586 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHAATS 79 (1403)
Q Consensus 1 M~~IkkLpe~vi~kIrSgevI~Sl~sVVkELVeNSLDAgAT~I~I~Id~g~-~~I~V~DNG~GIs~eDL~~vg~r~G~TS 79 (1403)
|++|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.++.+. ..|+|.|||+||+++++..++.++ +||
T Consensus 2 ~m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~-~ts 80 (333)
T 1b63_A 2 HMPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARH-ATS 80 (333)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTT-CCS
T ss_pred CCCCEECCHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCC-CCC
T ss_conf 9713579988998874677044799999999999998799869999990994699999848786979999763333-526
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCCC
Q ss_conf 67786545565687655864003687752044799998459997499999184554402156668997099991644671
Q 000586 80 KLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQ 159 (1403)
Q Consensus 80 Ki~s~eDL~~~~gi~TlGFRGEALaSIs~vS~VtI~SRt~g~~~g~~i~~~~g~~~~~~~~~~~~~~GTTV~V~nLF~Nl 159 (1403)
|+.+.+|+.. +.++|++|+||+|++.+|+++|+||+.+...+|++..+++... ....+...++||+|+|+|||+|+
T Consensus 81 K~~~~~d~~~---~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~GT~V~v~~Lf~n~ 156 (333)
T 1b63_A 81 KIASLDDLEA---IISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMN-VTVKPAAHPVGTTLEVLDLFYNT 156 (333)
T ss_dssp SCCSHHHHHT---CCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTE-EEEEEECCCSEEEEEEESTTTTC
T ss_pred CCCCCCHHHH---CCCCCCCCCCHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEECCCCCCCCEEEEECCCCCC
T ss_conf 7654331332---2356766534235444773999993189842899999188305-76620468999899993341246
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECC---CCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 56888841181789999999999998529980999996789853998279---999889999741832235738984038
Q 000586 160 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCS---SSSPLALLISSFGIEDFSFLDEVNAND 236 (1403)
Q Consensus 160 PVRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~k~ll~t~s---sss~ls~I~sIfG~~vas~L~~I~~e~ 236 (1403)
|+|+++++ +.+.++..|.+++++||+++|+++|++.++ ++.++...+ ..+..+++..+||......+.+++.+.
T Consensus 157 P~r~kflk-~~~~e~~~i~~~~~~~al~~p~v~~~l~~n--g~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~ 233 (333)
T 1b63_A 157 PARRKFLR-TEKTEFNHIDEIIRRIALARFDVTINLSHN--GKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQH 233 (333)
T ss_dssp HHHHHTCC-CHHHHHHHHHHHHHHHHHHCTTCEEEEEET--TEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEE
T ss_pred HHHHHHHC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CEEEEECCCCCCCCHHHHHHHHHHCHHHHHHEEEEEECC
T ss_conf 16666513-478999999999999850499837999999--999885378888720999999971956373149997047
Q ss_pred CCEEEEEEEECCCCCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 974999999578867877-6437899768233351478999999986026776222567554788888899479999984
Q 000586 237 GALEISGYISSPYDSISV-KAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRC 315 (1403)
Q Consensus 237 ~~ikIsGfIS~P~~~rss-Kd~QFIFINGRpV~~~~I~KlIneL~~sFe~l~~~k~~~~~~~~~r~~~~ryPVfILnI~C 315 (1403)
+.++|+||++.|...+.. ++.||+|||||+|..+.+.++|++.|..+. +..+||+|+|+|+|
T Consensus 234 ~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l-----------------~~~~~P~~~l~l~~ 296 (333)
T 1b63_A 234 GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKL-----------------GADQQPAFVLYLEI 296 (333)
T ss_dssp TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHS-----------------SSCCCCCEEEEEEC
T ss_pred CCEEEEEEEECCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHC-----------------CCCCCCEEEEEEEE
T ss_conf 9879999997675566777876899999999467899999999998646-----------------58898489999994
Q ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 8993112346998839709923899999999999985
Q 000586 316 PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 352 (1403)
Q Consensus 316 Pps~vDVNVePsKteV~Fkdee~IL~lIkkaIk~fL~ 352 (1403)
||+.||||+||+|++|+|.+++.|+.+|+++|.++|.
T Consensus 297 ~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~~~l~ 333 (333)
T 1b63_A 297 DPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 333 (333)
T ss_dssp CGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred CCHHCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 8033550088884989957889999999999999759
No 5
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=1.00 E-value=1 Score=347.84 Aligned_cols=194 Identities=22% Similarity=0.278 Sum_probs=165.5
Q ss_pred CCCCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 22356865866655979999829949999424578999799999998128885333457640440489799999999999
Q 000586 1161 KSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQ 1240 (1403)
Q Consensus 1161 K~~f~~mkVIGQvdkkFILae~~~~LvIIDQHAAHERIlfEkLl~e~~~~~~~sq~~L~~~QeLllP~~e~~LL~e~~e~ 1240 (1403)
+..|+.+++|||++++|||++.+++|||||||||||||+||+|++++......+|.+|. |..+.++..+..++.++.+.
T Consensus 3 ~~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~-P~~l~ls~~e~~~l~~~~~~ 81 (197)
T 3kdg_A 3 MDRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIV-PLTFHYSTNEALIIEQHKQE 81 (197)
T ss_dssp CCCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEE-EEEEECCTTHHHHHHHTHHH
T ss_pred CCCCCCCEEEEEECCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEECCHHHHHHHHHHHHH
T ss_conf 55477876878986999999808988998799999999999999997068877510178-97986299999999999999
Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99819499881368632232100002455289999560644678884569999999882289999948999999999600
Q 000586 1241 IKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACR 1320 (1403)
Q Consensus 1241 LeklGFeiei~~~g~~~Fg~n~~i~~~~~~tI~IraVP~~l~~~~~e~DL~ElL~~L~et~g~~~~p~sI~elLASrACR 1320 (1403)
|++|||+++ .||.+ ++.|+++|.++........+.++|..+.+.+. ...+....++++++|||
T Consensus 82 l~~~Gf~~e-------~~g~~---------~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~-~~~~~~~~~~~~~~ACr 144 (197)
T 3kdg_A 82 LESVGVFLE-------SFGSN---------SYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCK 144 (197)
T ss_dssp HHHTTCCCE-------ECSTT---------EEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHC
T ss_pred HHHCCCEEE-------ECCCC---------EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
T ss_conf 996899999-------87998---------89999568323566579999999999986599-88799999999998667
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 01126999999999999999831899999999994789967858999999995
Q 000586 1321 GAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1373 (1403)
Q Consensus 1321 sAIKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTiv~L~dL~eLeK~f~rl 1373 (1403)
+|||+|+.|+.+||++||++|+.|+.||+||||||||++| +..+|+|+|+|.
T Consensus 145 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l-~~~elek~F~R~ 196 (197)
T 3kdg_A 145 GSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH-STYEMEKMFKRV 196 (197)
T ss_dssp C----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE-EHHHHHHHHCSC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE-CHHHHHHHHCCC
T ss_conf 6355899999999999999998089989599999388992-899999971889
No 6
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=347.63 Aligned_cols=195 Identities=25% Similarity=0.327 Sum_probs=163.1
Q ss_pred CCCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 23568658666559799998299499994245789997999999981-28885333457640440489799999999999
Q 000586 1162 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL-SGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQ 1240 (1403)
Q Consensus 1162 ~~f~~mkVIGQvdkkFILae~~~~LvIIDQHAAHERIlfEkLl~e~~-~~~~~sq~~L~~~QeLllP~~e~~LL~e~~e~ 1240 (1403)
..++.+++|||++++|||++.+++|||||||||||||+||+|++++. .+...+|.+|. |..+.++..+..++.++.+.
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~-P~~l~Ls~~e~~~l~~~~~~ 103 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLI-PVTFAASHEECAALADHAET 103 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEE-EEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECC-CEEEECCHHHHHHHHHHHHH
T ss_conf 77987303312769899998089779977999999999999999870258865155178-96997399999999999999
Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99819499881368632232100002455289999560644678884569999999882289999948999999999600
Q 000586 1241 IKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACR 1320 (1403)
Q Consensus 1241 LeklGFeiei~~~g~~~Fg~n~~i~~~~~~tI~IraVP~~l~~~~~e~DL~ElL~~L~et~g~~~~p~sI~elLASrACR 1320 (1403)
|++|||+++ .||.+ ++.|++||.++........+.++|..+.+.+.....+..+.++++++|||
T Consensus 104 L~~lGf~ie-------~fg~~---------~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr 167 (220)
T 3ncv_A 104 LAGFGLELS-------DMGGN---------TLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCH 167 (220)
T ss_dssp HHHTTCEEE-------CCSTT---------EEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTC
T ss_pred HHHCCCEEE-------ECCCC---------EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 996898999-------87998---------89999768655777899999999999986488766089999999999877
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 011269999999999999998318999999999947899678589999999951
Q 000586 1321 GAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLN 1374 (1403)
Q Consensus 1321 sAIKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTiv~L~dL~eLeK~f~rl~ 1374 (1403)
+|||+|+.|+.+||++||++|+.|+.||+||||||||++| +..+|+|+|+|.+
T Consensus 168 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l-s~~eLek~F~R~~ 220 (220)
T 3ncv_A 168 GSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL-TLKELDTLFLRGQ 220 (220)
T ss_dssp SSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE-EHHHHHHTC----
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CHHHHHHHHCCCC
T ss_conf 6433489899999999999998089989698999589996-8999999727899
No 7
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=1.00 E-value=1 Score=258.62 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=140.1
Q ss_pred CCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 35686586665597999982994999942457899979999999812888533345764044048979999999999999
Q 000586 1163 CLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIK 1242 (1403)
Q Consensus 1163 ~f~~mkVIGQvdkkFILae~~~~LvIIDQHAAHERIlfEkLl~e~~~~~~~sq~~L~~~QeLllP~~e~~LL~e~~e~Le 1242 (1403)
.++.++++||++++||+++.+++||||||||| |||+||++++. ......+|.+|. |..+.++..+..++.++.+.|+
T Consensus 5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~-~~~~~~~Q~LL~-P~~l~ls~~e~~~l~~~~~~l~ 81 (188)
T 1x9z_A 5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTP-GEAPVCAQPLLI-PLRLKVSAEEKSALEKAQSALA 81 (188)
T ss_dssp -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSB-TTBCCCEEEEEE-EEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCEEEEEEECCCEEEEEHHHH-HHHHHHHHHHH-CCCCCCCCCCCC-CEEEEECHHHHHHHHHHHHHHH
T ss_conf 67775562635398999980897799759999-99999999973-379987554789-9799719999999999999999
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 81949988136863223210000245528999956064467888456999999988228999994899999999960001
Q 000586 1243 DWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGA 1322 (1403)
Q Consensus 1243 klGFeiei~~~g~~~Fg~n~~i~~~~~~tI~IraVP~~l~~~~~e~DL~ElL~~L~et~g~~~~p~sI~elLASrACRsA 1322 (1403)
+|||+++. || ++ +.|++||.+++.......+.+++..+.+ +... ...++++++|||+
T Consensus 82 ~~Gf~~e~-------~g---------~~-~~v~~vP~~l~~~~~~~li~~ll~~l~~--~~~~---~~~~~~~~~AC~~- 138 (188)
T 1x9z_A 82 ELGIDFQS-------DA---------QH-VTIRAVPLPLRQQNLQILIPELIGYLAK--QSVF---EPGNIAQWIARNL- 138 (188)
T ss_dssp HTTCEEEE-------CS---------SE-EEEEEEEGGGTTSCHHHHHHHHHHHHTT--CSSC---CHHHHHHHHHHTT-
T ss_pred HCCCEEEE-------CC---------CC-EEEEECCCHHCCCCHHHHHHHHHHHHHH--CCCC---HHHHHHHHHHHHH-
T ss_conf 57929998-------69---------96-9999649001654899999999999983--7862---6999999999744-
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEE----EECCCHHHHHHHH
Q ss_conf 12699999999999999983189999999999478----9967858999999
Q 000586 1323 IMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT----VPLVNLEALHKQI 1370 (1403)
Q Consensus 1323 IKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTi----v~L~dL~eLeK~f 1370 (1403)
||+|+.|+.+||.+||++|..| |||||||| +..+++..+-+.+
T Consensus 139 ik~g~~Ls~~em~~Ll~~L~~~-----CpHGRPt~~~~ll~~id~~~~l~~~ 185 (188)
T 1x9z_A 139 MSEHAQWSMAQAITLLADVERL-----CPQLVKTPPGGLLQSVDLHPAIKAL 185 (188)
T ss_dssp SCCCCSCCHHHHHHHHHHHHHH-----CHHHHHSCCTTTEEECCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCCHHHCEEECHHHHHHHH
T ss_conf 7257989999999999999967-----8799907646546540589999987
No 8
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=1.00 E-value=1 Score=232.87 Aligned_cols=320 Identities=16% Similarity=0.187 Sum_probs=223.4
Q ss_pred CCCCCCCHHHHHHHHCCCCCC------CHHHHHHHHHHCCCCC---C-CCEEEEEEECCEEEEEEEECCCCCCHHH----
Q ss_conf 885348968999871588404------9999999999712248---9-9819999954702999995999999877----
Q 000586 2 GTINRLPEAVRNTVRSGTVLF------DLTRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG---- 67 (1403)
Q Consensus 2 ~~IkkLpe~vi~kIrSgevI~------Sl~sVVkELVeNSLDA---g-AT~I~I~Id~g~~~I~V~DNG~GIs~eD---- 67 (1403)
..|+.|..--.-+.|.|.+|- .+.++|+|||+||+|| | |+.|.|.|+.+. .|+|.|||+|||.++
T Consensus 7 ~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 7 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp GGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS-CEEEEECSSCCCCSBCTTT
T ss_pred HHCEECCHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-EEEEEECCCCCCCCCCCCC
T ss_conf 988787504898719981889788876789999999984998875489988999994798-7999977987054701355
Q ss_pred ----HHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEEEE-ECCC
Q ss_conf ----997302-5566776778654556568765586400368775204-47999984599974999991845544-0215
Q 000586 68 ----LVLLGE-RHAATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-LGID 140 (1403)
Q Consensus 68 ----L~~vg~-r~G~TSKi~s~eDL~~~~gi~TlGFRGEALaSIs~vS-~VtI~SRt~g~~~g~~i~~~~g~~~~-~~~~ 140 (1403)
++.++. .| +|||+.+ +... .+.||||+||++++++| .++|+++..+ .+|+..+.+|.... ....
T Consensus 86 ~~~~~elv~~~lh-agsKf~~--~~~~----vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~ 156 (391)
T 1ei1_A 86 GVSAAEVIMTVLH-AGGKFDD--NSYK----VSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVT 156 (391)
T ss_dssp SSBHHHHHHHSTT-EESCSSS--SSCS----SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEE
T ss_pred CCCHHHHHHEECC-CCCCCCC--CCCC----CCCCCCCCCHHHHHHHCCEEEEEEEECC--CEEEEEECCCCCCCCCEEC
T ss_conf 7644877640013-5677688--7511----3477566656899983070999999699--6899998389634561341
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHH
Q ss_conf 66689970999916446715688884118-17899999999999985299809999967898-53998279999889999
Q 000586 141 DERKDVGTTVVSRDLFYNQPVRRKYMQSS-PKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLI 218 (1403)
Q Consensus 141 ~~~~~~GTTV~V~nLF~NlPVRRK~L~ss-~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~-k~ll~t~ssss~ls~I~ 218 (1403)
.....+||+|++. |.|++| ++ ...++..|.++++++|+++|+|+|+|.+.... +..+.+.+ .+.+.+.
T Consensus 157 ~~~~~~GT~V~f~------Pd~~~F--~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~ 226 (391)
T 1ei1_A 157 GETEKTGTMVRFW------PSLETF--TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG--GIKAFVE 226 (391)
T ss_dssp EECSCCEEEEEEE------ECTTTC--CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS--HHHHHHH
T ss_pred CCCCCCCCEEEEE------ECHHHH--CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCC--HHHHHHH
T ss_conf 5769995289999------880442--77310479999999999546689708999817986169998585--4999999
Q ss_pred HHHCCC--CCCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC---------HHHHHHHHHHHHHCCCC
Q ss_conf 741832--2357389840389749999995788678776437899768233351---------47899999998602677
Q 000586 219 SSFGIE--DFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSD 287 (1403)
Q Consensus 219 sIfG~~--vas~L~~I~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~~---------~I~KlIneL~~sFe~l~ 287 (1403)
.+.+.. +...++.++.+.+++.++++++.+ ......|+.|+|+|+...+ .|.+.+|...... .+.
T Consensus 227 ~l~~~~~~~~~~~i~~~~~~~~i~veva~~~~---~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~-~l~ 302 (391)
T 1ei1_A 227 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN---DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE-GYS 302 (391)
T ss_dssp HHHHTSCBSSSCCEEEEEEETTEEEEEEEEEB---SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHT-THH
T ss_pred HHCCCCCCCCCCCEEEEEECCCEEEEEEEECC---CCCCEEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCC
T ss_conf 97087766666647999750887999999806---88870399999564169998689999999999999999983-724
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCC---HHHHHHHHHHHHHHHHHH
Q ss_conf 6222567554788888899479999984899311234699883970992---389999999999998500
Q 000586 288 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW---EPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 288 ~~k~~~~~~~~~r~~~~ryPVfILnI~CPps~vDVNVePsKteV~Fkde---e~IL~lIkkaIk~fL~k~ 354 (1403)
. +.. .+-........-.+||++.+|.-.++ ..+|+. +-+. ..|-.++.+.+..+|..+
T Consensus 303 k-~~~---~~~~~~dvregl~avisvki~~P~Fe---gQTK~k--L~~~e~~~~v~~~v~~~l~~~l~~n 363 (391)
T 1ei1_A 303 K-KAK---VSATGDDAREGLIAVVSVKVPDPKFS---SQTKDK--LVSSEVKSAVEQQMNELLAEYLLEN 363 (391)
T ss_dssp H-HHC---CCCCHHHHTTTEEEEEEEECSSCCBS---STTCCS--BCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CCC---CCCCHHHHHHCCEEEEEEECCCCCCC---CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4-557---76698899615489999766899847---766220--1387789999999999999999989
No 9
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=1.00 E-value=1 Score=231.84 Aligned_cols=322 Identities=17% Similarity=0.150 Sum_probs=225.2
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCH--HHHHHHHHHCCCCC----CCCEEEEEEECCEEEEEEEECCCCCCHHH--------
Q ss_conf 88534896899987158840499--99999999712248----99819999954702999995999999877--------
Q 000586 2 GTINRLPEAVRNTVRSGTVLFDL--TRVVEELVFNSVDA----GATKVFVYVGVCNCYVKVVDDGSGISRDG-------- 67 (1403)
Q Consensus 2 ~~IkkLpe~vi~kIrSgevI~Sl--~sVVkELVeNSLDA----gAT~I~I~Id~g~~~I~V~DNG~GIs~eD-------- 67 (1403)
..|+.|..--.-+.|-|.+|-+. .++|+|||+||+|| .|+.|.|.++.+. .|+|.|||+|||.++
T Consensus 8 ~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~ 86 (390)
T 1s16_A 8 DAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPA 86 (390)
T ss_dssp GGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBH
T ss_pred HHCEECCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-EEEEEECCCCCCCCCCCCCCCCH
T ss_conf 77477642578864873066489577889999998998874489988999994598-89999799875734014567640
Q ss_pred HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEEEE-ECCCCC-C
Q ss_conf 9973025-566776778654556568765586400368775204-47999984599974999991845544-021566-6
Q 000586 68 LVLLGER-HAATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-LGIDDE-R 143 (1403)
Q Consensus 68 L~~vg~r-~G~TSKi~s~eDL~~~~gi~TlGFRGEALaSIs~vS-~VtI~SRt~g~~~g~~i~~~~g~~~~-~~~~~~-~ 143 (1403)
++.++.+ | +|||+.+ +... .+.||||+||++++++| .++|+|+..+ .+|...+.+|.... ...... .
T Consensus 87 ~e~v~~~lh-agsKf~~--~~~~----~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~ 157 (390)
T 1s16_A 87 VELILCRLH-AGGKFSN--KNYQ----FSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCG 157 (390)
T ss_dssp HHHHHHCTT-EESCSSS--SSCS----SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECC
T ss_pred HHHEEEEEC-CCCCCCC--CCCC----CCCCCCCCCHHHHHHHHCCCEEEEEECC--CEEEEEEECCCCCCCCEECCCCC
T ss_conf 542366502-5677677--7643----4377466426999986263089999799--58999996894024632415666
Q ss_pred -CCCCEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHHHH
Q ss_conf -8997099991644671568888411817899999999999985299809999967898-53998279999889999741
Q 000586 144 -KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSF 221 (1403)
Q Consensus 144 -~~~GTTV~V~nLF~NlPVRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~-k~ll~t~ssss~ls~I~sIf 221 (1403)
..+||+|++. |.|++| ++...++..|.++++++|+++|+|+|+|.+.... ...+.+.+ ++.+.+..++
T Consensus 158 ~~~~GT~V~f~------Pd~~~F--~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~ 227 (390)
T 1s16_A 158 KRNTGTSVHFW------PDETFF--DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAV 227 (390)
T ss_dssp TTCCEEEEEEE------ECGGGS--SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHH
T ss_pred CCCCCEEEEEE------ECCCCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCC--CHHHHHHHHH
T ss_conf 79996099999------893001--7642559999999999972489847999807986069998687--3999999983
Q ss_pred CCC--CCCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHCCCCCCC
Q ss_conf 832--23573898403897499999957886787764378997682333514---------7899999998602677622
Q 000586 222 GIE--DFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGP---------IHKLLNHLAASFDCSDSWK 290 (1403)
Q Consensus 222 G~~--vas~L~~I~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~~~---------I~KlIneL~~sFe~l~~~k 290 (1403)
+.. +...++.++.+.+++.++++++.| +......|+.|||+|++..+. |.+.+|..... ..+.+ +
T Consensus 228 ~~~~~~~~~~i~~~~~~~~~~ve~a~~~~--~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~-~~~~k-~ 303 (390)
T 1s16_A 228 NGLPTLPEKPFIGNFAGDTEAVDWALLWL--PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY-RNILP-R 303 (390)
T ss_dssp TTSCCEEEEEEEEEEECSSEEEEEEEEEC--TTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHH-TTCSC-T
T ss_pred CCCCCCCCCCEEEEEEECCEEEEEEEEEC--CCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCC-C
T ss_conf 78765677748999850887999999714--67887319999888851899888999999999999999998-27675-6
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 256755478888889947999998489931123469988397099-2389999999999998500
Q 000586 291 ANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 291 ~~~~~~~~~r~~~~ryPVfILnI~CPps~vDVNVePsKteV~Fkd-ee~IL~lIkkaIk~fL~k~ 354 (1403)
. .... .......-..||++.+|.-.++ ..+|+..--.. -..|-.++.+.+..+|..+
T Consensus 304 ~--~~l~--~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 304 G--VKLS--AEDIWDRCAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp T--CCCC--HHHHHTTEEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHHTC
T ss_pred C--CCCC--HHHHHHCCEEEEEEECCCCCCC---CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7--7659--8899611199999655999746---1001000475677788899999999999979
No 10
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=1.00 E-value=1 Score=220.41 Aligned_cols=307 Identities=10% Similarity=0.018 Sum_probs=212.0
Q ss_pred HHHHCCCCC-----CCHHHHHHHHHHCCCCC----CCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 987158840-----49999999999712248----998199999547029999959999998779973025566776778
Q 000586 13 NTVRSGTVL-----FDLTRVVEELVFNSVDA----GATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHAATSKLGH 83 (1403)
Q Consensus 13 ~kIrSgevI-----~Sl~sVVkELVeNSLDA----gAT~I~I~Id~g~~~I~V~DNG~GIs~eDL~~vg~r~G~TSKi~s 83 (1403)
-+.|-|-+| ..+.++|+|||+||+|| +|+.|.|.|+.+. .|+|.|||+|||. ++. +.+| +|||+.+
T Consensus 15 vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v--~~lh-agsKf~~ 89 (369)
T 3cwv_A 15 VRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG-SIALFCTSRTVTA-ENL--VRVA-TGAGFLG 89 (369)
T ss_dssp HHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS-CEEEEEEESSCCH-HHH--HHHH-TTTTGGG
T ss_pred HHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEEECCCCCCH-HHE--EEEE-CCCCCCC
T ss_conf 870996587679984188999999964686786489988999994897-8999988977187-672--2320-5788688
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEE------EE-ECCCCCCCCCCEEEEECCC
Q ss_conf 654556568765586400368775204-479999845999749999918455------44-0215666899709999164
Q 000586 84 LADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKC------LY-LGIDDERKDVGTTVVSRDL 155 (1403)
Q Consensus 84 ~eDL~~~~gi~TlGFRGEALaSIs~vS-~VtI~SRt~g~~~g~~i~~~~g~~------~~-~~~~~~~~~~GTTV~V~nL 155 (1403)
.+ + ..+|+++| |+++++++| .++|+|+..+ .+|+..+.+|.. .. ........++||+|++.
T Consensus 90 ~~-~-----~~~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~-- 158 (369)
T 3cwv_A 90 RP-P-----GDGWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV-- 158 (369)
T ss_dssp SS-C-----CCSTTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE--
T ss_pred CC-C-----CCCCCCCC-HHHHHHHHHCEEEEEEEECC--CEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCEEEEE--
T ss_conf 76-6-----64012537-89999996354999999799--78999994893234555667844703458998889999--
Q ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHHHHCCC--CCCCCEEE
Q ss_conf 4671568888411817899999999999985299809999967898-53998279999889999741832--23573898
Q 000586 156 FYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSFGIE--DFSFLDEV 232 (1403)
Q Consensus 156 F~NlPVRRK~L~ss~kke~~~Ik~lI~~yALihP~IsFsL~n~~s~-k~ll~t~ssss~ls~I~sIfG~~--vas~L~~I 232 (1403)
|.|++| ++...++..|.++++++|+++|+|+|+|.+.... +..+.+.+ ++.+.+..+++.. +...++.+
T Consensus 159 ----Pd~~~F--~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~ 230 (369)
T 3cwv_A 159 ----PDATIF--EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVF 230 (369)
T ss_dssp ----ECTTTC--SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEE
T ss_pred ----ECHHHH--CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC--HHHHHHHHHHCCCCCCCCCCEEE
T ss_conf ----897883--8754449999999999717689857999947987069999086--19999999836776667774899
Q ss_pred EECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4038974999999578867877643789976823335-----14789999999860267762225675547888888994
Q 000586 233 NANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK-----GPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACP 307 (1403)
Q Consensus 233 ~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~-----~~I~KlIneL~~sFe~l~~~k~~~~~~~~~r~~~~ryP 307 (1403)
+.+.+++.++++++.+ ...+..|+.|||+|++.. ..+..++...+..|.. . . . .+-........-
T Consensus 231 ~~~~~~i~ve~a~~~~---~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k--~--~-~--~~l~~~dvregl 300 (369)
T 3cwv_A 231 DFTWDGLRVQCALQWC---EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG--E--T-R--GAFPWARVAQGL 300 (369)
T ss_dssp EEEETTEEEEEEEEEB---SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT--C--C-G--GGSCHHHHTTTE
T ss_pred EEECCCEEEEEEEEEC---CCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHH--H--C-C--CCCCHHHHHHCC
T ss_conf 9743987999999806---888715999987877689987899999999999999985--3--4-7--875989996202
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 7999998489931123469988397099-2389999999999998500
Q 000586 308 AYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMKK 354 (1403)
Q Consensus 308 VfILnI~CPps~vDVNVePsKteV~Fkd-ee~IL~lIkkaIk~fL~k~ 354 (1403)
..||++.+|.-.+-+ -..+|+..--.. -..|-.++.+.+..+|..+
T Consensus 301 ~avisvk~~~P~~~F-egQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 301 TAIVAVSGPRRQMAF-AGPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp EEEEEEECCGGGCCB-SSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHC-CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999994047960204-66563000487889999999999999999979
Done!