BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000589
(1403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1
Length = 311
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%)
Query: 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069
++G A L +A L++ +G H +VA LA+V A + L I
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98
Query: 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFIN 1129
E+ LG DHP A + N+A+ Y + + G DHPDVA N
Sbjct: 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158
Query: 1130 VAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
+A++ Q+ GK + Y Q AL+ + LG + A + LA + G FK
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%)
Query: 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINV 1130
E+ G DHPD A +AL Y N+ + G DHP VAAT N+
Sbjct: 58 EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190
A++Y GK A + AL+ E++LG++H A + LA+ G ++ + +
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177
Query: 1191 KTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221
+ +I +LG +D ++N + + +++
Sbjct: 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%)
Query: 1075 GLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMY 1134
G + P + N+ + Y + E G DHPDVA +A++Y
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY 79
Query: 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194
+D K A L +AL E+ LG++H A + LA+ + G +K + K+ +
Sbjct: 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139
Query: 1195 ILVKQLGEE 1203
I K LG++
Sbjct: 140 IREKVLGKD 148
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%)
Query: 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINV 1130
E+ G DHPD A +AL Y N+ + G DHP VAAT N+
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190
A++Y GK A + AL+ E++LG+ H A + LA+ G + + +
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151
Query: 1191 KTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221
+ +I +LG +D ++N + + +++
Sbjct: 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Query: 1017 AYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076
A L +A L++ +G H +VA LA+V A + L I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 1077 DHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQD 1136
DHP A + N+A+ Y + + G HPDVA N+A++ Q+
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK---------LSHQ 1187
GK + Y + AL+ LG + A + LA + G ++ L+
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199
Query: 1188 HEKK 1191
HEK+
Sbjct: 200 HEKE 203
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 2/182 (1%)
Query: 972 AATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQV 1031
+A P + +L+ H P + N++ + V + EA L ++A +I ++
Sbjct: 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKT 76
Query: 1032 TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091
G H VA LA++ G A + L I E+ LG HPD A N+AL
Sbjct: 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALL 136
Query: 1092 YHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151
+ E GPD P+VA T N+A Y GK A +E L
Sbjct: 137 CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 1152 KK 1153
+
Sbjct: 197 TR 198
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%)
Query: 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINV 1130
E+ G DHPD A +AL Y N+ + G DHP VAAT N+
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190
A++Y GK A + AL+ E++LG+ H A LA+ G + + +
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYR 151
Query: 1191 KTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221
+ +I +LG +D ++N + + +++
Sbjct: 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Query: 1017 AYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076
A L +A L++ +G H +VA LA+V A + L I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 1077 DHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQD 1136
DHP A + N+A+ Y + + G HPDVA N+A++ Q+
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK---------LSHQ 1187
GK + Y + AL+ LG + A + LA + G ++ L+
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199
Query: 1188 HEKK 1191
HEK+
Sbjct: 200 HEKE 203
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 2/182 (1%)
Query: 972 AATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQV 1031
+A P + +L+ H P + N++ + V + EA L ++A +I ++
Sbjct: 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKT 76
Query: 1032 TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091
G H VA LA++ G A + L I E+ LG HPD A N+AL
Sbjct: 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALL 136
Query: 1092 YHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151
+ E GPD P+VA T N+A Y GK A +E L
Sbjct: 137 CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 1152 KK 1153
+
Sbjct: 197 TR 198
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1130 VAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162
V M +DIG+ + A YL+E L+K ERL+G H
Sbjct: 219 VTKMLEDIGEKEHAEAYLKEKLEKGERLMGFGH 251
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 976 FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM 1035
FE +I+ L+ VV +S+P+ L E + G L L F+++Q V M
Sbjct: 74 FEHPNIIRLEGVVTNSMPVMI----LTEF----MENGALDSFLRLNDGQFTVIQLVG--M 123
Query: 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078
R +A+ RYLA + Y D+A + + L+ GL
Sbjct: 124 LRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSR 166
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 26/82 (31%)
Query: 742 FTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHG 801
F +K G Q ++A Y D++L F +L + LTE L A+G
Sbjct: 206 FNAYKARGGQVDLA-----------YRGDMILRGFDSEL---------RKQLTEQLRANG 245
Query: 802 INIRY------IGKVADGTKHL 817
IN+R + K ADGT+H+
Sbjct: 246 INVRTHENPAKVTKNADGTRHV 267
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 976 FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM 1035
FE +I+ L+ VV +S+P+ L E + G L L F+++Q V M
Sbjct: 72 FEHPNIIRLEGVVTNSMPVMI----LTEF----MENGALDSFLRLNDGQFTVIQLVG--M 121
Query: 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078
R +A+ RYLA + Y D+A + + L+ GL
Sbjct: 122 LRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSR 164
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 26/82 (31%)
Query: 742 FTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHG 801
F +K G Q ++A Y D++L F +L + LTE L A+G
Sbjct: 206 FNAYKARGGQVDLA-----------YRGDMILRGFDSEL---------RKQLTEQLRANG 245
Query: 802 INIRY------IGKVADGTKHL 817
IN+R + K ADGT+H+
Sbjct: 246 INVRTHENPAKVTKNADGTRHV 267
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 26/82 (31%)
Query: 742 FTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHG 801
F +K G Q ++A Y D++L F +L + LTE L A+G
Sbjct: 207 FNAYKARGGQVDLA-----------YRGDMILRGFDSEL---------RKQLTEQLRANG 246
Query: 802 INIRY------IGKVADGTKHL 817
IN+R + K ADGT+H+
Sbjct: 247 INVRTHENPAKVTKNADGTRHV 268
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 26/82 (31%)
Query: 742 FTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHG 801
F +K G Q ++A Y D++L F +L + LTE L A+G
Sbjct: 207 FNAYKARGGQVDLA-----------YRGDMILRGFDSEL---------RKQLTEQLRANG 246
Query: 802 INIRY------IGKVADGTKHL 817
IN+R + K ADGT+H+
Sbjct: 247 INVRTHENPAKVTKNADGTRHV 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,521,004
Number of Sequences: 62578
Number of extensions: 1385047
Number of successful extensions: 3300
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3269
Number of HSP's gapped (non-prelim): 24
length of query: 1403
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1292
effective length of database: 8,027,179
effective search space: 10371115268
effective search space used: 10371115268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)